Query 004858
Match_columns 727
No_of_seqs 265 out of 539
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 14:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4302 Microtubule-associated 100.0 9E-107 2E-111 916.3 66.1 639 6-682 7-660 (660)
2 PF03999 MAP65_ASE1: Microtubu 100.0 1.9E-80 4.2E-85 719.8 15.3 449 36-506 2-469 (619)
3 KOG4302 Microtubule-associated 99.9 1.1E-22 2.4E-27 232.3 52.2 287 71-377 18-309 (660)
4 PF03999 MAP65_ASE1: Microtubu 99.9 7E-25 1.5E-29 255.6 12.7 414 11-505 31-472 (619)
5 PRK02224 chromosome segregatio 96.7 1.6 3.4E-05 54.1 31.2 49 34-84 149-197 (880)
6 PF12128 DUF3584: Protein of u 96.4 1.4 3E-05 56.6 28.3 45 219-263 766-813 (1201)
7 KOG4643 Uncharacterized coiled 96.2 4.7 0.0001 49.6 36.4 51 359-409 527-578 (1195)
8 PHA02562 46 endonuclease subun 95.1 7 0.00015 45.7 25.6 95 33-139 149-243 (562)
9 TIGR03185 DNA_S_dndD DNA sulfu 95.1 10 0.00023 45.5 37.5 238 99-382 206-452 (650)
10 TIGR02168 SMC_prok_B chromosom 94.8 16 0.00035 46.1 32.6 12 296-307 910-921 (1179)
11 COG1196 Smc Chromosome segrega 94.6 20 0.00043 46.2 33.4 13 362-374 946-958 (1163)
12 KOG0161 Myosin class II heavy 94.4 27 0.00058 46.8 36.3 148 51-202 1194-1343(1930)
13 TIGR02169 SMC_prok_A chromosom 94.3 21 0.00044 45.4 34.2 35 161-195 799-833 (1164)
14 PRK11637 AmiB activator; Provi 92.9 21 0.00045 40.7 23.5 40 100-139 94-133 (428)
15 TIGR03185 DNA_S_dndD DNA sulfu 92.5 30 0.00065 41.7 33.2 40 294-333 480-519 (650)
16 KOG0250 DNA repair protein RAD 92.1 32 0.00069 43.2 23.8 31 155-185 332-362 (1074)
17 KOG0995 Centromere-associated 91.7 33 0.00071 40.3 27.1 42 224-265 453-494 (581)
18 KOG0996 Structural maintenance 91.6 48 0.001 42.0 33.7 98 222-329 933-1032(1293)
19 KOG0964 Structural maintenance 91.4 26 0.00056 43.5 21.6 206 50-262 227-449 (1200)
20 KOG0612 Rho-associated, coiled 91.4 51 0.0011 42.0 37.2 37 222-258 635-672 (1317)
21 KOG0161 Myosin class II heavy 91.4 67 0.0015 43.3 36.9 31 54-84 1056-1086(1930)
22 TIGR00606 rad50 rad50. This fa 91.2 60 0.0013 42.5 42.5 129 294-449 591-726 (1311)
23 PRK11637 AmiB activator; Provi 90.9 28 0.0006 39.7 21.0 41 99-139 44-84 (428)
24 KOG4643 Uncharacterized coiled 90.7 53 0.0012 41.0 31.1 41 99-139 174-214 (1195)
25 PF00038 Filament: Intermediat 90.7 27 0.00059 37.7 30.8 122 47-197 12-133 (312)
26 COG1340 Uncharacterized archae 90.6 29 0.00062 37.7 24.6 83 99-181 59-152 (294)
27 KOG0971 Microtubule-associated 90.5 53 0.0012 40.6 30.5 24 314-337 530-553 (1243)
28 TIGR00606 rad50 rad50. This fa 90.5 70 0.0015 41.9 44.7 119 36-187 171-289 (1311)
29 COG1196 Smc Chromosome segrega 90.1 69 0.0015 41.4 36.7 14 441-454 1080-1093(1163)
30 PF08317 Spc7: Spc7 kinetochor 90.1 13 0.00029 40.8 16.9 85 103-203 210-298 (325)
31 KOG0977 Nuclear envelope prote 89.8 31 0.00068 40.6 20.0 31 51-81 97-127 (546)
32 PF00038 Filament: Intermediat 89.7 33 0.00071 37.1 23.4 80 49-135 57-136 (312)
33 KOG0994 Extracellular matrix g 89.2 75 0.0016 40.4 23.2 39 224-262 1591-1629(1758)
34 PF10146 zf-C4H2: Zinc finger- 88.4 24 0.00053 37.1 16.5 109 47-203 2-111 (230)
35 PF03915 AIP3: Actin interacti 87.9 28 0.00061 39.8 17.8 172 159-388 150-322 (424)
36 PF13514 AAA_27: AAA domain 87.8 95 0.0021 40.0 37.4 199 50-264 561-776 (1111)
37 KOG4674 Uncharacterized conser 87.8 1.1E+02 0.0025 40.8 38.6 82 46-141 696-777 (1822)
38 KOG0933 Structural maintenance 87.4 89 0.0019 39.2 27.3 183 97-311 789-975 (1174)
39 PRK09039 hypothetical protein; 87.0 39 0.00085 37.6 18.1 133 63-254 49-181 (343)
40 PRK02224 chromosome segregatio 86.4 96 0.0021 38.5 44.1 34 160-193 412-445 (880)
41 KOG1029 Endocytic adaptor prot 86.2 47 0.001 40.3 18.5 72 58-136 435-506 (1118)
42 cd08915 V_Alix_like Protein-in 86.0 60 0.0013 35.8 29.3 114 75-192 106-222 (342)
43 cd09234 V_HD-PTP_like Protein- 85.5 63 0.0014 35.7 28.9 111 77-192 110-220 (337)
44 cd07627 BAR_Vps5p The Bin/Amph 84.1 53 0.0011 33.9 16.3 37 297-333 171-214 (216)
45 PRK04863 mukB cell division pr 84.0 1.6E+02 0.0035 39.1 33.2 32 167-198 456-487 (1486)
46 PF10498 IFT57: Intra-flagella 83.8 22 0.00047 39.8 14.1 104 51-180 218-321 (359)
47 TIGR02168 SMC_prok_B chromosom 83.6 1.4E+02 0.003 37.9 41.4 18 429-446 969-986 (1179)
48 PRK04778 septation ring format 83.5 1.1E+02 0.0023 36.5 39.1 70 12-84 59-129 (569)
49 TIGR02169 SMC_prok_A chromosom 83.2 1.4E+02 0.0031 37.9 39.3 14 464-477 986-999 (1164)
50 PF08317 Spc7: Spc7 kinetochor 83.0 79 0.0017 34.8 25.0 77 64-140 79-162 (325)
51 PRK10869 recombination and rep 82.7 1.1E+02 0.0024 36.2 25.7 37 101-137 163-199 (553)
52 cd09236 V_AnPalA_UmRIM20_like 82.6 86 0.0019 34.9 33.2 180 13-192 25-224 (353)
53 TIGR00634 recN DNA repair prot 82.5 1.1E+02 0.0024 36.2 23.0 91 156-265 297-395 (563)
54 COG4942 Membrane-bound metallo 82.4 98 0.0021 35.4 22.0 180 37-254 37-219 (420)
55 PLN03188 kinesin-12 family pro 82.2 1.7E+02 0.0036 37.9 23.6 36 296-332 1044-1080(1320)
56 PF13514 AAA_27: AAA domain 82.1 1.7E+02 0.0036 37.8 32.4 101 160-264 736-841 (1111)
57 PRK04778 septation ring format 81.7 1.2E+02 0.0026 36.0 36.9 94 39-140 199-299 (569)
58 cd09234 V_HD-PTP_like Protein- 81.6 91 0.002 34.5 32.5 197 46-255 6-219 (337)
59 PF15070 GOLGA2L5: Putative go 81.6 1.3E+02 0.0028 36.3 28.9 109 55-184 38-146 (617)
60 PF10168 Nup88: Nuclear pore c 81.3 1.4E+02 0.0031 36.6 25.6 118 118-254 598-715 (717)
61 PHA02562 46 endonuclease subun 80.8 1.2E+02 0.0026 35.4 28.0 40 360-399 360-400 (562)
62 COG4477 EzrA Negative regulato 80.5 1.3E+02 0.0027 35.5 22.3 247 14-273 165-451 (570)
63 smart00787 Spc7 Spc7 kinetocho 79.5 1E+02 0.0023 33.9 19.9 21 218-238 265-285 (312)
64 COG1340 Uncharacterized archae 78.5 75 0.0016 34.6 15.3 33 105-137 134-172 (294)
65 TIGR02680 conserved hypothetic 78.1 2.4E+02 0.0052 37.3 28.5 127 36-177 740-868 (1353)
66 cd09237 V_ScBro1_like Protein- 78.0 1.2E+02 0.0026 33.7 24.0 119 73-192 100-230 (356)
67 KOG0018 Structural maintenance 77.5 2.1E+02 0.0046 36.3 27.8 75 314-391 882-962 (1141)
68 TIGR03007 pepcterm_ChnLen poly 77.3 1.5E+02 0.0032 34.3 22.8 141 56-198 207-348 (498)
69 cd09237 V_ScBro1_like Protein- 75.3 1.4E+02 0.0031 33.2 35.5 197 46-255 6-229 (356)
70 PF07106 TBPIP: Tat binding pr 73.1 65 0.0014 31.8 12.5 136 63-247 33-168 (169)
71 KOG0933 Structural maintenance 73.0 2.7E+02 0.0058 35.3 31.3 36 292-328 904-939 (1174)
72 KOG0979 Structural maintenance 72.1 2.8E+02 0.006 35.1 21.7 103 160-266 202-304 (1072)
73 PF06160 EzrA: Septation ring 72.0 2.2E+02 0.0047 33.9 37.4 71 11-84 54-125 (560)
74 KOG0964 Structural maintenance 71.1 2.9E+02 0.0063 34.9 31.8 83 299-397 907-989 (1200)
75 PRK04863 mukB cell division pr 70.2 3.8E+02 0.0082 35.9 38.3 23 15-37 235-257 (1486)
76 PF13949 ALIX_LYPXL_bnd: ALIX 69.9 1.6E+02 0.0034 31.4 21.9 66 185-253 105-170 (296)
77 PF15066 CAGE1: Cancer-associa 69.7 47 0.001 38.1 11.5 141 47-192 338-503 (527)
78 cd09236 V_AnPalA_UmRIM20_like 68.3 2E+02 0.0044 32.0 35.3 197 46-255 6-223 (353)
79 PF15070 GOLGA2L5: Putative go 68.1 2.8E+02 0.006 33.6 26.2 104 65-185 2-105 (617)
80 smart00787 Spc7 Spc7 kinetocho 67.9 2E+02 0.0043 31.8 24.9 76 64-139 74-156 (312)
81 PF14662 CCDC155: Coiled-coil 67.3 1.5E+02 0.0034 30.3 18.4 78 52-140 28-105 (193)
82 PF05557 MAD: Mitotic checkpoi 67.0 23 0.0005 43.2 9.3 40 219-258 498-537 (722)
83 KOG0995 Centromere-associated 66.6 2.8E+02 0.006 33.0 27.8 38 100-137 271-308 (581)
84 PF05667 DUF812: Protein of un 66.4 2.9E+02 0.0063 33.2 20.8 243 224-493 328-590 (594)
85 PF11995 DUF3490: Domain of un 65.4 1E+02 0.0023 30.5 11.5 90 247-342 2-113 (161)
86 PF10174 Cast: RIM-binding pro 64.5 3.6E+02 0.0078 33.5 38.5 142 104-271 130-271 (775)
87 cd07664 BAR_SNX2 The Bin/Amphi 63.9 2E+02 0.0043 30.4 21.9 38 296-333 186-230 (234)
88 PF12252 SidE: Dot/Icm substra 63.4 4.2E+02 0.009 33.9 28.7 140 220-377 1175-1317(1439)
89 KOG0977 Nuclear envelope prote 63.3 3.2E+02 0.0069 32.5 28.0 180 49-254 52-231 (546)
90 KOG0980 Actin-binding protein 62.9 3.9E+02 0.0085 33.4 23.2 70 62-135 388-457 (980)
91 PF10146 zf-C4H2: Zinc finger- 62.8 1.8E+02 0.0039 30.6 13.8 36 224-259 32-67 (230)
92 PRK09039 hypothetical protein; 62.8 2.5E+02 0.0055 31.2 21.3 132 98-238 112-252 (343)
93 PF15254 CCDC14: Coiled-coil d 62.6 3.7E+02 0.0081 33.1 20.0 166 10-190 334-517 (861)
94 COG4026 Uncharacterized protei 62.4 75 0.0016 33.2 10.4 79 160-267 135-213 (290)
95 COG1579 Zn-ribbon protein, pos 61.4 2.3E+02 0.0049 30.2 18.3 108 57-185 49-156 (239)
96 PF11629 Mst1_SARAH: C termina 61.3 11 0.00023 30.1 3.3 25 361-385 22-47 (49)
97 PF10239 DUF2465: Protein of u 60.7 2.7E+02 0.0058 30.8 15.8 135 15-183 60-211 (318)
98 PF04065 Not3: Not1 N-terminal 60.4 1.4E+02 0.0031 31.5 12.5 121 297-447 4-144 (233)
99 KOG0018 Structural maintenance 59.5 4.8E+02 0.01 33.4 25.7 245 54-392 653-898 (1141)
100 COG1579 Zn-ribbon protein, pos 58.5 2.5E+02 0.0055 29.8 17.8 88 104-198 40-127 (239)
101 PRK10884 SH3 domain-containing 58.4 1.8E+02 0.0038 30.2 12.6 35 161-195 140-174 (206)
102 smart00806 AIP3 Actin interact 58.2 3.4E+02 0.0074 31.2 26.8 169 159-388 154-326 (426)
103 COG4913 Uncharacterized protei 58.1 1.3E+02 0.0028 36.7 12.6 116 52-189 767-885 (1104)
104 COG4026 Uncharacterized protei 58.0 1.4E+02 0.003 31.3 11.4 42 98-139 131-172 (290)
105 PF04849 HAP1_N: HAP1 N-termin 57.9 2.9E+02 0.0064 30.4 19.2 37 221-257 266-302 (306)
106 KOG4674 Uncharacterized conser 57.1 6.6E+02 0.014 34.2 43.9 268 16-332 542-821 (1822)
107 KOG4848 Extracellular matrix-a 57.1 1.6E+02 0.0036 30.1 11.5 38 400-446 123-160 (225)
108 TIGR03007 pepcterm_ChnLen poly 56.0 3.7E+02 0.0081 31.0 27.0 140 109-257 204-343 (498)
109 PF07888 CALCOCO1: Calcium bin 55.9 4.2E+02 0.0091 31.5 35.6 11 455-465 439-449 (546)
110 PF05557 MAD: Mitotic checkpoi 55.8 43 0.00093 40.9 8.9 37 157-193 500-536 (722)
111 PF07106 TBPIP: Tat binding pr 54.9 1.9E+02 0.0042 28.5 12.0 27 157-183 142-168 (169)
112 KOG2398 Predicted proline-seri 54.8 2.8E+02 0.006 33.5 15.0 46 222-267 7-58 (611)
113 PF08606 Prp19: Prp19/Pso4-lik 53.6 86 0.0019 27.0 7.7 64 12-77 3-67 (70)
114 PF07888 CALCOCO1: Calcium bin 53.3 4.6E+02 0.0099 31.2 31.5 18 293-310 370-387 (546)
115 KOG4460 Nuclear pore complex, 50.8 5E+02 0.011 30.9 21.4 128 108-253 611-738 (741)
116 PF12325 TMF_TATA_bd: TATA ele 50.7 2.2E+02 0.0047 27.1 10.8 10 163-172 99-108 (120)
117 KOG0996 Structural maintenance 50.4 6.9E+02 0.015 32.4 33.2 110 163-311 348-457 (1293)
118 COG0497 RecN ATPase involved i 49.4 5.3E+02 0.011 30.8 23.6 199 102-386 164-370 (557)
119 PF11995 DUF3490: Domain of un 49.0 14 0.0003 36.4 2.7 25 319-343 3-27 (161)
120 PF08614 ATG16: Autophagy prot 48.5 34 0.00073 34.7 5.5 83 99-197 71-153 (194)
121 KOG0982 Centrosomal protein Nu 48.4 4.1E+02 0.0089 30.6 14.0 40 100-139 337-379 (502)
122 PF10211 Ax_dynein_light: Axon 47.6 3.2E+02 0.007 27.8 15.9 18 122-139 169-186 (189)
123 PF04912 Dynamitin: Dynamitin 47.4 4.6E+02 0.01 29.5 22.2 54 178-237 206-259 (388)
124 PF13870 DUF4201: Domain of un 45.2 3.2E+02 0.007 27.1 21.9 74 108-196 5-78 (177)
125 PF13543 KSR1-SAM: SAM like do 44.9 2E+02 0.0043 27.8 9.6 51 218-275 75-125 (129)
126 KOG2129 Uncharacterized conser 44.3 1.8E+02 0.0039 33.2 10.4 46 224-275 179-224 (552)
127 COG4942 Membrane-bound metallo 43.7 5.6E+02 0.012 29.5 24.2 94 102-201 38-131 (420)
128 PF01576 Myosin_tail_1: Myosin 43.3 7.9 0.00017 48.2 0.0 90 51-140 192-281 (859)
129 PF12325 TMF_TATA_bd: TATA ele 43.2 2.2E+02 0.0048 27.0 9.6 34 102-135 30-63 (120)
130 KOG0976 Rho/Rac1-interacting s 42.8 7.7E+02 0.017 30.8 39.7 89 294-400 270-359 (1265)
131 cd07665 BAR_SNX1 The Bin/Amphi 42.7 4.4E+02 0.0094 27.9 22.0 37 297-333 187-230 (234)
132 KOG3758 Uncharacterized conser 42.5 6.9E+02 0.015 30.2 18.8 34 106-139 53-87 (655)
133 COG2433 Uncharacterized conser 42.2 4.3E+02 0.0093 31.8 13.5 93 98-196 418-510 (652)
134 PRK03947 prefoldin subunit alp 42.1 2.9E+02 0.0062 26.3 10.6 22 100-121 11-32 (140)
135 PF12064 DUF3544: Domain of un 40.7 82 0.0018 31.5 6.5 38 576-616 49-87 (207)
136 PF06705 SF-assemblin: SF-asse 40.5 4.6E+02 0.0099 27.5 29.2 24 236-259 166-189 (247)
137 KOG2129 Uncharacterized conser 40.0 6.3E+02 0.014 29.0 17.3 12 363-374 258-269 (552)
138 PF02183 HALZ: Homeobox associ 39.5 1.4E+02 0.0029 23.5 6.3 42 42-84 2-43 (45)
139 PF06401 Alpha-2-MRAP_C: Alpha 38.8 4.8E+02 0.01 27.3 13.0 41 154-198 123-163 (214)
140 KOG0250 DNA repair protein RAD 38.5 9.8E+02 0.021 30.8 31.2 88 104-197 237-325 (1074)
141 PF10168 Nup88: Nuclear pore c 38.2 8.6E+02 0.019 30.0 18.2 29 156-184 532-560 (717)
142 PF15290 Syntaphilin: Golgi-lo 37.5 1.9E+02 0.0041 31.3 9.0 46 93-138 56-104 (305)
143 KOG0972 Huntingtin interacting 37.1 5.5E+02 0.012 28.2 12.3 34 51-84 225-258 (384)
144 TIGR00634 recN DNA repair prot 36.9 7.8E+02 0.017 29.2 28.3 36 221-256 298-333 (563)
145 cd03489 Topoisomer_IB_N_Ldtopo 36.5 51 0.0011 34.1 4.5 34 468-501 90-123 (212)
146 cd09235 V_Alix Middle V-domain 36.4 6.3E+02 0.014 27.9 29.9 170 13-189 24-217 (339)
147 cd03488 Topoisomer_IB_N_htopoI 36.1 50 0.0011 34.2 4.4 33 469-501 94-126 (215)
148 PF11365 DUF3166: Protein of u 35.9 2.8E+02 0.0061 25.4 8.7 70 38-115 8-82 (96)
149 PF09325 Vps5: Vps5 C terminal 35.9 4.9E+02 0.011 26.5 18.7 36 297-332 191-233 (236)
150 KOG2150 CCR4-NOT transcription 35.8 8.3E+02 0.018 29.2 30.4 120 297-446 4-143 (575)
151 PF10191 COG7: Golgi complex c 35.6 9.5E+02 0.021 29.8 20.2 118 160-312 151-275 (766)
152 PF04111 APG6: Autophagy prote 35.6 4.5E+02 0.0097 28.9 12.1 32 53-84 50-81 (314)
153 PF05667 DUF812: Protein of un 35.5 8.7E+02 0.019 29.3 30.8 62 112-189 317-378 (594)
154 PF06818 Fez1: Fez1; InterPro 35.3 5.2E+02 0.011 26.9 11.5 92 105-199 13-105 (202)
155 PF11932 DUF3450: Protein of u 35.2 5.1E+02 0.011 27.2 12.1 31 51-81 40-70 (251)
156 cd00660 Topoisomer_IB_N Topois 35.0 53 0.0012 34.0 4.4 33 469-501 94-126 (215)
157 PF04912 Dynamitin: Dynamitin 34.9 7E+02 0.015 28.1 23.1 53 121-174 207-260 (388)
158 KOG2220 Predicted signal trans 34.5 9.7E+02 0.021 29.6 20.8 125 64-191 439-568 (714)
159 PF03938 OmpH: Outer membrane 34.2 4.2E+02 0.0091 25.4 10.5 40 102-141 29-68 (158)
160 PF12761 End3: Actin cytoskele 34.1 5.5E+02 0.012 26.5 11.4 61 62-129 134-194 (195)
161 PF10398 DUF2443: Protein of u 34.1 2.7E+02 0.0059 24.3 7.7 52 318-376 12-68 (79)
162 PF01576 Myosin_tail_1: Myosin 33.8 14 0.0003 46.1 0.0 89 51-139 136-224 (859)
163 PF04849 HAP1_N: HAP1 N-termin 33.3 7E+02 0.015 27.6 20.1 145 159-329 159-303 (306)
164 PF09766 FimP: Fms-interacting 33.1 5.1E+02 0.011 29.0 12.2 31 360-390 86-116 (355)
165 PF09726 Macoilin: Transmembra 33.0 1E+03 0.022 29.3 29.3 228 55-376 420-654 (697)
166 PF11932 DUF3450: Protein of u 32.9 6E+02 0.013 26.7 12.4 18 250-267 147-164 (251)
167 PF10212 TTKRSYEDQ: Predicted 32.5 9.1E+02 0.02 28.6 14.8 71 104-187 443-514 (518)
168 PF04156 IncA: IncA protein; 32.2 5.2E+02 0.011 25.7 13.7 26 104-129 125-150 (191)
169 COG5293 Predicted ATPase [Gene 31.5 9E+02 0.019 28.3 15.3 60 14-79 295-354 (591)
170 PF13949 ALIX_LYPXL_bnd: ALIX 31.5 6.5E+02 0.014 26.7 31.3 118 68-189 51-170 (296)
171 PRK03918 chromosome segregatio 31.2 1.1E+03 0.024 29.2 44.1 20 292-311 450-469 (880)
172 PF10498 IFT57: Intra-flagella 31.0 1.1E+02 0.0025 34.3 6.6 93 106-198 217-311 (359)
173 PF10473 CENP-F_leu_zip: Leuci 30.8 5.2E+02 0.011 25.3 10.8 79 99-193 21-99 (140)
174 PF10147 CR6_interact: Growth 30.6 2.5E+02 0.0054 29.5 8.5 63 419-487 122-202 (217)
175 PF04111 APG6: Autophagy prote 30.4 6.4E+02 0.014 27.7 12.2 28 163-190 102-129 (314)
176 cd08915 V_Alix_like Protein-in 30.1 7.7E+02 0.017 27.1 37.6 197 46-254 6-220 (342)
177 PF06248 Zw10: Centromere/kine 29.7 6.1E+02 0.013 30.2 12.8 166 55-261 9-177 (593)
178 TIGR01005 eps_transp_fam exopo 29.7 1.1E+03 0.024 28.8 19.0 163 50-253 234-405 (754)
179 PRK05771 V-type ATP synthase s 29.4 9.4E+02 0.02 29.0 14.5 253 32-305 14-296 (646)
180 PRK03947 prefoldin subunit alp 29.3 5E+02 0.011 24.6 11.1 41 99-139 91-131 (140)
181 COG2433 Uncharacterized conser 28.8 7.9E+02 0.017 29.7 12.9 89 292-398 420-514 (652)
182 PRK10869 recombination and rep 28.3 1.1E+03 0.023 28.1 30.0 100 120-242 215-314 (553)
183 COG5185 HEC1 Protein involved 28.2 1E+03 0.022 27.9 29.8 39 295-333 534-575 (622)
184 TIGR02231 conserved hypothetic 28.1 4.9E+02 0.011 30.4 11.6 42 99-140 128-169 (525)
185 PF08614 ATG16: Autophagy prot 28.1 5.7E+02 0.012 25.8 10.6 36 104-139 118-153 (194)
186 PF10212 TTKRSYEDQ: Predicted 28.0 5.6E+02 0.012 30.3 11.5 30 55-84 450-479 (518)
187 KOG1451 Oligophrenin-1 and rel 28.0 1.1E+03 0.025 28.4 14.3 37 163-199 218-254 (812)
188 PF09727 CortBP2: Cortactin-bi 28.0 6.6E+02 0.014 25.9 10.8 38 39-76 85-122 (192)
189 PF10186 Atg14: UV radiation r 27.4 7.4E+02 0.016 26.0 17.0 21 317-337 260-280 (302)
190 PRK03918 chromosome segregatio 27.2 1.3E+03 0.028 28.7 42.0 22 355-376 449-470 (880)
191 KOG4603 TBP-1 interacting prot 26.9 6.8E+02 0.015 25.4 17.0 38 48-85 81-118 (201)
192 PF05911 DUF869: Plant protein 26.8 1.3E+03 0.029 28.7 17.0 158 6-193 45-202 (769)
193 KOG0963 Transcription factor/C 26.4 1.2E+03 0.026 28.1 32.0 34 357-390 284-318 (629)
194 PRK02793 phi X174 lysis protei 26.2 4.2E+02 0.0091 22.7 7.9 48 37-85 7-54 (72)
195 TIGR01558 sm_term_P27 phage te 26.2 2.1E+02 0.0046 26.4 6.6 26 63-88 69-94 (116)
196 PF04108 APG17: Autophagy prot 26.2 1E+03 0.022 27.2 31.8 324 13-360 26-403 (412)
197 COG3096 MukB Uncharacterized p 26.2 1.4E+03 0.029 28.6 29.1 85 109-197 934-1021(1480)
198 PF10234 Cluap1: Clusterin-ass 26.1 8.6E+02 0.019 26.3 16.4 32 160-191 225-256 (267)
199 PF04100 Vps53_N: Vps53-like, 25.7 1E+03 0.022 27.0 16.0 148 100-277 62-224 (383)
200 PF15035 Rootletin: Ciliary ro 25.7 7.2E+02 0.016 25.2 10.8 110 10-119 27-165 (182)
201 PF02919 Topoisom_I_N: Eukaryo 25.5 52 0.0011 34.2 2.5 33 469-501 95-127 (215)
202 KOG3091 Nuclear pore complex, 25.5 1.2E+03 0.025 27.6 18.0 36 46-81 355-390 (508)
203 PF08172 CASP_C: CASP C termin 25.4 5.5E+02 0.012 27.4 10.2 37 159-195 85-121 (248)
204 cd07595 BAR_RhoGAP_Rich-like T 25.3 8.3E+02 0.018 25.9 14.6 125 12-139 76-203 (244)
205 KOG4673 Transcription factor T 25.2 1.3E+03 0.029 28.3 25.8 292 119-446 306-601 (961)
206 PF02994 Transposase_22: L1 tr 25.0 1.2E+02 0.0027 34.0 5.6 37 224-260 151-187 (370)
207 PF09738 DUF2051: Double stran 24.5 9.7E+02 0.021 26.4 15.0 39 218-256 198-244 (302)
208 PRK10780 periplasmic chaperone 24.5 6.8E+02 0.015 24.6 12.6 110 105-229 39-164 (165)
209 PF06637 PV-1: PV-1 protein (P 24.4 1.1E+03 0.024 26.9 15.4 72 99-171 347-427 (442)
210 PF14992 TMCO5: TMCO5 family 24.3 8.7E+02 0.019 26.5 11.4 137 53-197 14-153 (280)
211 PF10267 Tmemb_cc2: Predicted 24.1 7.8E+02 0.017 28.2 11.6 108 222-371 210-318 (395)
212 KOG0804 Cytoplasmic Zn-finger 24.1 1.2E+03 0.025 27.3 12.7 112 35-172 336-447 (493)
213 TIGR00444 mazG MazG family pro 23.9 3.7E+02 0.008 28.7 8.6 85 159-260 154-246 (248)
214 KOG2196 Nuclear porin [Nuclear 23.9 9.1E+02 0.02 25.8 15.8 67 16-84 73-154 (254)
215 PRK10361 DNA recombination pro 23.8 1E+03 0.022 27.9 12.7 26 309-334 275-300 (475)
216 KOG1854 Mitochondrial inner me 23.7 1.4E+03 0.03 27.8 17.5 97 224-324 248-355 (657)
217 KOG4360 Uncharacterized coiled 23.5 1.3E+03 0.028 27.4 20.0 152 222-398 210-377 (596)
218 PF12761 End3: Actin cytoskele 23.4 8.3E+02 0.018 25.2 10.7 86 98-187 99-194 (195)
219 cd07615 BAR_Endophilin_A3 The 23.3 8.9E+02 0.019 25.5 15.4 114 12-141 83-197 (223)
220 PF05600 DUF773: Protein of un 23.0 7.2E+02 0.016 29.3 11.5 45 98-142 127-171 (507)
221 PF06818 Fez1: Fez1; InterPro 23.0 8.7E+02 0.019 25.2 12.9 43 160-202 10-52 (202)
222 PF07058 Myosin_HC-like: Myosi 22.8 1.1E+03 0.023 26.2 18.2 49 484-536 146-194 (351)
223 PF15397 DUF4618: Domain of un 22.8 9.8E+02 0.021 25.8 23.0 27 223-249 119-145 (258)
224 PF04156 IncA: IncA protein; 22.8 7.6E+02 0.016 24.5 15.6 28 160-187 123-150 (191)
225 PF14712 Snapin_Pallidin: Snap 22.7 3.5E+02 0.0075 23.7 7.0 37 47-83 8-44 (92)
226 PF08172 CASP_C: CASP C termin 22.6 8.3E+02 0.018 26.0 10.9 30 53-82 6-35 (248)
227 PF14643 DUF4455: Domain of un 22.5 1.2E+03 0.027 26.9 37.5 46 288-333 236-281 (473)
228 PF04949 Transcrip_act: Transc 22.4 7.7E+02 0.017 24.4 10.0 28 104-131 114-141 (159)
229 KOG4657 Uncharacterized conser 22.3 8.5E+02 0.018 25.8 10.4 72 37-123 64-139 (246)
230 COG4717 Uncharacterized conser 22.2 1.7E+03 0.036 28.3 20.9 121 14-140 586-714 (984)
231 KOG3091 Nuclear pore complex, 22.2 1.3E+03 0.029 27.1 13.1 36 104-139 357-392 (508)
232 PF14712 Snapin_Pallidin: Snap 21.9 5.4E+02 0.012 22.5 8.2 36 105-140 10-45 (92)
233 PF00261 Tropomyosin: Tropomyo 21.7 9.3E+02 0.02 25.1 27.1 34 294-328 197-230 (237)
234 PF07083 DUF1351: Protein of u 21.5 9.1E+02 0.02 25.0 15.5 137 51-205 51-189 (215)
235 TIGR03752 conj_TIGR03752 integ 21.3 9.2E+02 0.02 28.2 11.5 47 93-139 57-103 (472)
236 smart00806 AIP3 Actin interact 21.1 1.3E+03 0.028 26.6 27.8 138 100-272 153-299 (426)
237 KOG0239 Kinesin (KAR3 subfamil 21.0 1E+03 0.022 29.3 12.4 145 33-194 170-320 (670)
238 PF06705 SF-assemblin: SF-asse 20.5 9.9E+02 0.022 25.0 24.7 83 159-258 152-235 (247)
239 KOG4398 Predicted coiled-coil 20.4 4.6E+02 0.01 28.5 8.2 20 299-318 70-89 (359)
240 PRK09737 EcoKI restriction-mod 20.4 1.1E+02 0.0025 34.3 4.3 87 264-377 371-458 (461)
241 PRK02119 hypothetical protein; 20.3 5E+02 0.011 22.4 7.1 47 38-85 9-55 (73)
242 PRK11546 zraP zinc resistance 20.3 5.9E+02 0.013 25.0 8.4 49 61-117 62-111 (143)
243 PF01496 V_ATPase_I: V-type AT 20.3 3.5E+02 0.0076 33.3 8.7 218 167-399 31-278 (759)
No 1
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=8.9e-107 Score=916.35 Aligned_cols=639 Identities=46% Similarity=0.663 Sum_probs=543.9
Q ss_pred CCcchhhhhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004858 6 DPFLQEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAE 85 (727)
Q Consensus 6 ~~~~~~~~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe 85 (727)
.+.++..+||+.++.+|+.|||+||+++++|++++..|++||+++|+++|+++...+++|+++|+++++|+.+||++||+
T Consensus 7 ~~~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~ 86 (660)
T KOG4302|consen 7 EVSLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGE 86 (660)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHH
Q 004858 86 PPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEF 165 (727)
Q Consensus 86 ~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL 165 (727)
+++...++++..++|+++|..+.+.|+.|+++|++|+++|.+++.||+.||.+|+|. .....+..+|..|||+++|++|
T Consensus 87 ~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~-~~~~~~~~~D~~dlsl~kLeel 165 (660)
T KOG4302|consen 87 PSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP-EDLPSFLIADESDLSLEKLEEL 165 (660)
T ss_pred cccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccCCcccccCcccccHHHHHHH
Confidence 998877788889999999999999999999999999999999999999999999876 1112234678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004858 166 HRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEG--SRSISDDTIEQLTTAIQKLREVKIQR 243 (727)
Q Consensus 166 ~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~--~~~LS~~tL~~L~~~l~~LeeeK~~R 243 (727)
+.+|.+|++||..|+++|.+++.+|+.||.+||++|...+..+||+|.+..+ +++||+++|++|..++..|+++|.+|
T Consensus 166 r~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr 245 (660)
T KOG4302|consen 166 REHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQR 245 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987665 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004858 244 MQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQS 323 (727)
Q Consensus 244 ~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ 323 (727)
++++++|+.+|.+|||+|++|+|||..|.+++ +++++.+++||.++|.+++.||.||++||+++||+||+++|.
T Consensus 246 ~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~ 319 (660)
T KOG4302|consen 246 LQKLQDLRTKLLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRS 319 (660)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999975 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCC
Q 004858 324 ELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRD 403 (727)
Q Consensus 324 ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile~Vekw~~l~eE~~~LE~~~kD 403 (727)
||++||+.+||+.+...+..|++.++++|..|..++|+.++.+|.++|+++.+||+|+++|++|+++|+++.|||+|++|
T Consensus 320 Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~D 399 (660)
T KOG4302|consen 320 ELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNRD 399 (660)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccch
Confidence 99999999999994333445667899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCchhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHcCCeeEECCchHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004858 404 ENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQ 483 (727)
Q Consensus 404 pnR~~nrrGah~~LlrEEK~Rk~v~KLPklee~L~~~l~~WE~e~g~pFl~dG~~lLe~lee~~~~r~eKE~ek~r~R~~ 483 (727)
.|||+++||+|++|+||||+|++|+|||+|++.|+.++.+||+++|++|+|||++|++|+++|..||++||++++|+|++
T Consensus 400 ~nR~~~~Rg~h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~~~FL~~g~~ll~m~~e~~~~r~~ke~~k~r~rd~ 479 (660)
T KOG4302|consen 400 SNRYNAGRGAHLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKGRPFLVDGVPLLEMLEEYEEHRQEKEQEKARQRDQ 479 (660)
T ss_pred hhhHhccccchhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCceeecCccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCccccCccCCCCCCCCccccCccccCCCCCCCCCcccccCCCCccccccccccCC
Q 004858 484 KKLKEQLIAEQEALYGSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTPKPDSLGSIKATPHSRPIKKIDRTLQHD 563 (727)
Q Consensus 484 kK~q~q~~~e~e~~~Gs~psp~k~~~~~k~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (727)
||+++|+..+++..|||+|||++|.+.||..+.+++ ++.+++.|++..+.+..... ++.
T Consensus 480 kk~s~q~~~~~~~~~~sk~sp~~p~s~rk~~~~~t~--~~~~~~~~ps~~~~s~~~~~----~s~--------------- 538 (660)
T KOG4302|consen 480 KKTSGQLKPEQEGRYGSKPSPSKPNSPRKNRGRSTP--PNGSLSKTPSKRPLSGGNSA----AST--------------- 538 (660)
T ss_pred cccccccCccccccccCCCCCCCCCccccCCCCCCC--CCCCCCCCCccCcCCCCCCC----CCc---------------
Confidence 999999999999999999999999999998655433 22233332222211111110 000
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCccCCCCCCc-ccCCCCcCCCCCccCCC-CCCCCCCCCCCCCCCCCCCCCCcccC
Q 004858 564 PSNLHLDDGCATESAGRRGLDIPGEPKKKQSSDAS-EQDSPMKRRPFSAINST-TSSNDVNPNGETVQKPDPPFDLSFTT 641 (727)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (727)
......+| +|+++..+..|..+...++. .+.|+...+++++.+.+ +-+..|+.++..............++
T Consensus 539 ------~~~~~~~s-~r~~~~~st~p~n~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~s~ 611 (660)
T KOG4302|consen 539 ------QNRTTPLS-PRRLRASSTTPANKVARQKIESLNSNNSSPASSSLSTSQTHSQLNVEKSTIFLVPSDHETCSRSG 611 (660)
T ss_pred ------ccCCCCCC-cccccCCCCCCchhhhcccccccccCCCCCccCCCCCCCCcccccccccccccccCcchhhccCC
Confidence 00111122 27777778888877766666 35555445555555544 23444444444333333333333332
Q ss_pred CCCCCCcC--ccccC-------CCCCCC--CCCCCCCCcccccccccccCCC
Q 004858 642 PSNTNSFI--DDENM-------TPKSMP--IPVPPTPPTISVPMQTTTTTPA 682 (727)
Q Consensus 642 ~~~~~~~~--~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 682 (727)
+++++. -++-+ +|++.. .++|.+|..||++|.+++ ||.
T Consensus 612 --~~s~~~r~~~~~r~~~~~~~~~~~s~k~~~~~~~~~~ss~~~~~~p-~~~ 660 (660)
T KOG4302|consen 612 --RSSTGTRNSEKKRLLSKSSSSPDTSGKLNSPPNEPEFSSYELSKSP-TFL 660 (660)
T ss_pred --CCCccccchhhhcccchhccCCchhhhhcCCCCCccccccccccCC-CCC
Confidence 222222 11222 233222 567999999999999998 763
No 2
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=100.00 E-value=1.9e-80 Score=719.82 Aligned_cols=449 Identities=39% Similarity=0.570 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----------CCCCCC-----CccccCC
Q 004858 36 KDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEP-----------PVHNRQ-----SDQTAGN 99 (727)
Q Consensus 36 Rd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~-----------p~~~~~-----~d~~~~~ 99 (727)
++.|+..++.+|+++|.++|++++..+++|+++|+++++|++.||++||+. |+.... -.....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 81 (619)
T PF03999_consen 2 CDLMVVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMP 81 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhccccc
Confidence 467889999999999999999999999999999999999999995555543 221110 0023457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCC-HHHHHHHHHHHHHHHHHHHH
Q 004858 100 LKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLS-LRKLEEFHRELHELQKEKSD 178 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS-~e~LeeL~~~L~~Lq~EK~~ 178 (727)
|.+++..|+++|+.|++++.+|+++|.+|+.+++.||.+|+..+.... ...++..+++ .++|+.|+.+|+.|++||+.
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~-~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~ 160 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLN-PFDIDESDLPSLEELEELRQHLQRLQEEKER 160 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCc-cccCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999964433221 1245666666 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChh-hhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 179 RMKQVQDHLNTLNSFCSVLGMDFK-LTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLEL 257 (727)
Q Consensus 179 Rl~kv~el~~~I~~L~~~Lg~d~~-~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eL 257 (727)
|+++|.+++..|+.||.+||++|. ..+......+.+++..++||+++|++|...++.|+++|.+|.+++++|+.+|..|
T Consensus 161 R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~L 240 (619)
T PF03999_consen 161 RLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEEL 240 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 5443333233356678999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcc
Q 004858 258 WNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPE 337 (727)
Q Consensus 258 W~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~e 337 (727)
|++|++|++||+.|.. .+++||.++|++++.||+||++||+++|++||+++|.+|++|||+|||+++
T Consensus 241 W~~L~~~~ee~~~F~~-------------~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~e 307 (619)
T PF03999_consen 241 WNRLDVPEEEREAFLE-------------ENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEE 307 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCCHHHHHHHhh-------------ccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999965 467899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCChhhhhcCCCCchhc
Q 004858 338 NDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLIL 417 (727)
Q Consensus 338 eR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile~Vekw~~l~eE~~~LE~~~kDpnR~~nrrGah~~L 417 (727)
+|.+|...+ + +.++|+||+.||.||++|+++|.+||+||++|++|.++|+++.|||+|++|||||++||| | |
T Consensus 308 er~~F~~~~--~---d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg-~--L 379 (619)
T PF03999_consen 308 ERQAFTPFY--I---DSYTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLNNRGG-H--L 379 (619)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG---------H
T ss_pred HHHHHHHHh--c---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhccccc-H--H
Confidence 999886543 2 345699999999999999999999999999999999999999999999999999996555 5 8
Q ss_pred hHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHcCCeeEECCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004858 418 KRAEKARSLVNK-LPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQKKLKEQLIAEQEA 496 (727)
Q Consensus 418 lrEEK~Rk~v~K-LPklee~L~~~l~~WE~e~g~pFl~dG~~lLe~lee~~~~r~eKE~ek~r~R~~kK~q~q~~~e~e~ 496 (727)
|+|||.|++|.+ ||+|+++|+.+|.+||.++|+||+|||++|+++|++|......+++++.+.|++++.+.+..+++++
T Consensus 380 LkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e~~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~ 459 (619)
T PF03999_consen 380 LKEEKERKRIQKKLPKLEEELKKKLEEWEEEHGKPFLVDGERYLEYLEEYEEQWERKREEKERSKQQKKLQNQKQTEQEM 459 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--EETTEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEcCccHHHHHHHHHHHHHhhhhhhccccccCCCCCCCccccCC
Confidence 999999998875 9999999999999999999999999999999999877777777777888888899999999999999
Q ss_pred hcCCCCCCCC
Q 004858 497 LYGSKPSPLK 506 (727)
Q Consensus 497 ~~Gs~psp~k 506 (727)
+|||+|+|.+
T Consensus 460 ~~~s~~s~~~ 469 (619)
T PF03999_consen 460 PYGSKPSPAP 469 (619)
T ss_dssp HC--------
T ss_pred CCCCccccCC
Confidence 9999887654
No 3
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.94 E-value=1.1e-22 Score=232.26 Aligned_cols=287 Identities=17% Similarity=0.255 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCccccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccc
Q 004858 71 DYEAELAAICSAMAEPPVHNRQSDQTAGNLKEE-LRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSK 149 (727)
Q Consensus 71 ~~~~EL~~L~~eLGe~p~~~~~~d~~~~~Lkeq-L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~ 149 (727)
.+..+|+.||+++|++... .++.+..|.++ +..|+..+++....++.-.+++...+.++..||..|+..+.++.
T Consensus 18 ~~~~eL~~IW~~igE~~~e---~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-- 92 (660)
T KOG4302|consen 18 NLLNELQKIWDEIGESETE---RDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-- 92 (660)
T ss_pred HHHHHHHHHHHHhCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc--
Confidence 3344599999999997543 33556667777 88999999999999999999999999999999999966554433
Q ss_pred cccccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHH
Q 004858 150 TVVDETGLS-LRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQ 228 (727)
Q Consensus 150 ~~vd~~dLS-~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~ 228 (727)
..+...-| .++|..+...|+.|++.|++|..+|.++..+|..||.+||..+. . .+..+ .+..+||+..|+.
T Consensus 93 -~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~--~--~~~~~---~D~~dlsl~kLee 164 (660)
T KOG4302|consen 93 -ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPED--L--PSFLI---ADESDLSLEKLEE 164 (660)
T ss_pred -cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--C--Ccccc---cCcccccHHHHHH
Confidence 23333335 58999999999999999999999999999999999999998821 1 11111 2357899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhc--cCCCcHHHHHHHHHHHHHH
Q 004858 229 LTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITE--RNTLSVDFIDHVEAEVTRL 306 (727)
Q Consensus 229 L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~--~~~LS~d~Ie~le~EV~RL 306 (727)
|+..+..|+++|..|++++..+...|..||..||++ |..+...+++|..+-.. +.++|.++|+.+..-|..|
T Consensus 165 lr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~------~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l 238 (660)
T KOG4302|consen 165 LREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD------FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKL 238 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999994 55555566666655554 7899999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHH-HhhhcCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 004858 307 EELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTL-EAIESGTTDPANVLEQIELQIAKAKEEAFSR 377 (727)
Q Consensus 307 eeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~-~~i~sg~~d~eeLLe~~E~EI~rLke~~~sr 377 (727)
.+.|.+++.++ ..++..+.+||++|.+|+++|..|.++. .-+...+..+.+++...+.|+.||.++..++
T Consensus 239 ~~~k~qr~~kl-~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~ 309 (660)
T KOG4302|consen 239 KEEKKQRLQKL-QDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASN 309 (660)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999996 9999999999999999999999997632 1122234567899999999999999998887
No 4
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=99.91 E-value=7e-25 Score=255.64 Aligned_cols=414 Identities=20% Similarity=0.281 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHHHHHhHhCCChhHHHHHHH-------------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 11 EETTSGSLIEQLQIIWDEVGETDTDKDKMLL-------------ELEQ-----ECLQVYRRKVDEANRCRAHLRQTIADY 72 (727)
Q Consensus 11 ~~~~c~s~L~eLq~IWdEIG~~e~eRd~ml~-------------elEq-----e~l~vyr~kVde~~~~k~~L~qsIa~~ 72 (727)
....+..+-.++..|+.++|+..+.-...|. +.+. +++..++..+++..+.+...++.|.++
T Consensus 31 l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L 110 (619)
T PF03999_consen 31 LLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKEL 110 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999998888876655333322 2111 244446778888898999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCC--CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---ccc
Q 004858 73 EAELAAICSAMAEPPVHNR--QSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTI---YIS 147 (727)
Q Consensus 73 ~~EL~~L~~eLGe~p~~~~--~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~---~~~ 147 (727)
..++..||.+||..+.... ..+....+-.++|+.++.+|+.|++++..|+++|..+..+|..||.+|+..+. +..
T Consensus 111 ~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~ 190 (619)
T PF03999_consen 111 QEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEK 190 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchh
Confidence 9999999999997654321 12233334346789999999999999999999999999999999999976653 211
Q ss_pred cccc----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCH
Q 004858 148 SKTV----VDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISD 223 (727)
Q Consensus 148 ~~~~----vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~ 223 (727)
...+ .+..+||.+.|+.|+..++.|+.+|..|.+++.++...|..||..|+++.+....++. .+.++|.
T Consensus 191 ~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~-------~~~~ls~ 263 (619)
T PF03999_consen 191 DLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLE-------ENSGLSL 263 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh-------ccCcchH
Confidence 1111 2357899999999999999999999999999999999999999999998776543321 2467999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHH
Q 004858 224 DTIEQLTTAIQKLREVKIQRMQKL-QDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAE 302 (727)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl-~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~E 302 (727)
++|+.|+.++++|+++|.++++++ ...+.+|.+||+.|.+++++|..|..++.. +.+.++|+.++.|
T Consensus 264 ~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d------------~~~E~lL~~hE~E 331 (619)
T PF03999_consen 264 DTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYID------------SYTEELLELHEEE 331 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc------------cchHHHHHHHHHH
Confidence 999999999999999999999998 669999999999999999999999886643 3568999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004858 303 VTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILE 382 (727)
Q Consensus 303 V~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile 382 (727)
|.||++....+ +. |+++-.+++++|+.+. .-++....... +...| ..||..-+..-.-.+.+...-+.|..
T Consensus 332 i~~Lk~~~~~~-k~-Il~~v~k~~~l~~~~~-~Le~~~~D~~R--l~~RG----g~LLkEEk~rk~i~k~lPkle~~L~~ 402 (619)
T PF03999_consen 332 IERLKEEYESR-KP-ILELVEKWESLWEEME-ELEESSKDPSR--LNNRG----GHLLKEEKERKRIQKKLPKLEEELKK 402 (619)
T ss_dssp ---HHHHHHHH-HH-HHHHHHHHHHHHHHHH-HHHHHHH-CCG--G----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HH-HHHHHHHHHHHHHHHH-HHHHHhcChhh--hcccc----cHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999875 33 4677788999998775 11222211111 11233 23555444444445566677788889
Q ss_pred HHHHHHHHhHHHHHHHHHcCChhhhhcCCCCchhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHcCCeeEECCchHHHh
Q 004858 383 KIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSM 462 (727)
Q Consensus 383 ~Vekw~~l~eE~~~LE~~~kDpnR~~nrrGah~~LlrEEK~Rk~v~KLPklee~L~~~l~~WE~e~g~pFl~dG~~lLe~ 462 (727)
.|..|+. -...| |.. -|.. +.+-| . ++
T Consensus 403 ~l~~wE~----------e~g~p--Flv-~G~~------------------~le~l----~------------------e~ 429 (619)
T PF03999_consen 403 KLEEWEE----------EHGKP--FLV-DGER------------------YLEYL----E------------------EY 429 (619)
T ss_dssp HHHHHHH----------HHTS----EE-TTEE------------------HHHHH----H--------------------
T ss_pred HHHHHHH----------HcCCe--EEE-cCcc------------------HHHHH----H------------------HH
Confidence 9999842 11223 553 3431 11111 1 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 004858 463 LDEYTILRQEKEQERRRQRDQKKLKEQLIAEQEALYGSKPSPL 505 (727)
Q Consensus 463 lee~~~~r~eKE~ek~r~R~~kK~q~q~~~e~e~~~Gs~psp~ 505 (727)
.++|..++++|+..+...+.+.+.+.+...---..-.+.|+|+
T Consensus 430 ~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~~~~s~~s~~~~~~ 472 (619)
T PF03999_consen 430 EEQWERKREEKERSKQQKKLQNQKQTEQEMPYGSKPSPAPSTP 472 (619)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHhhhhhhccccccCCCCCCCccccCCCCCCccccCCCCC
Confidence 6788889999998887555555555444343333334455443
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=96.70 E-value=1.6 Score=54.10 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 34 TDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 34 ~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
.+|..++..|.. + +.|......+...+..+...+..+..++..+...|.
T Consensus 149 ~~R~~ii~~l~~-l-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (880)
T PRK02224 149 SDRQDMIDDLLQ-L-GKLEEYRERASDARLGVERVLSDQRGSLDQLKAQIE 197 (880)
T ss_pred HHHHHHHHHHhC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544432 1 223333333333333344444455555555555444
No 6
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.36 E-value=1.4 Score=56.58 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCC
Q 004858 219 RSISDDTIEQLTTAIQKLREVK---IQRMQKLQDLATTMLELWNLMDT 263 (727)
Q Consensus 219 ~~LS~~tL~~L~~~l~~LeeeK---~~R~~kl~~L~~~L~eLW~~L~i 263 (727)
.++....|..|+..+..|+.+- .++...+.++..-+.++|..++-
T Consensus 766 ~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~ 813 (1201)
T PF12128_consen 766 KGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDE 813 (1201)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 5667778888888888776543 34455677888999999988553
No 7
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.23 E-value=4.7 Score=49.55 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhHHHHHHHHHcCChhhhhc
Q 004858 359 VLEQIELQIAKAKEEAF-SRKDILEKIDKWLAACEEESWLEDYNRDENRYNA 409 (727)
Q Consensus 359 LLe~~E~EI~rLke~~~-srK~Ile~Vekw~~l~eE~~~LE~~~kDpnR~~n 409 (727)
++..+=.++..++..++ .+..++..|...+.-|.....||..++|-.+|++
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~ 578 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHN 578 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Confidence 34444444555555553 5588999999988888888889999888888864
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.12 E-value=7 Score=45.66 Aligned_cols=95 Identities=11% Similarity=0.152 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHH
Q 004858 33 DTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLE 112 (727)
Q Consensus 33 e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LE 112 (727)
..+|..++..+.. +++|..+-...+.....+.+.++.+..++..+-..+..-. .....++.+ ....++
T Consensus 149 ~~er~~il~~l~~--~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~-------~~i~~~~~~---~~~~i~ 216 (562)
T PHA02562 149 APARRKLVEDLLD--ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYN-------KNIEEQRKK---NGENIA 216 (562)
T ss_pred hHhHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHH---HHHHHH
Confidence 3445666666543 3566665555454555666677777777777666664211 001112222 223455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 113 EMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 113 eLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
.++++.++-..+...+..++..+-++|
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666
No 9
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.12 E-value=10 Score=45.53 Aligned_cols=238 Identities=14% Similarity=0.197 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRST-IYISSKTVVDETGLSLRKLEEFHRELHELQKEKS 177 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~-~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~ 177 (727)
.+..+++.+...+..+..+.++-.+++..++.++..+-..+..-. .+.. ...-..++.+.++.++..++.++.
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~------~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS------EGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777766666666655566666666655555543110 0000 011123456677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004858 178 DRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQD-LATTMLE 256 (727)
Q Consensus 178 ~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~-L~~~L~e 256 (727)
++.+.+..+.+. ..++.|....|..+...+...+.-+ +.+.+.+ +......
T Consensus 280 e~~~~l~~l~~~--------------------------~~p~~l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~~~~~~ 331 (650)
T TIGR03185 280 ANRAQLRELAAD--------------------------PLPLLLIPNLLDSTKAQLQKEEQSQ--QNQLTQEELEERDKE 331 (650)
T ss_pred HHHHHHHHHhcc--------------------------cCCHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 666665444332 1235566778888888877765333 3333444 4466667
Q ss_pred HHHhc---CCCHHHHHHHHhhhhc-cccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHH
Q 004858 257 LWNLM---DTPIEEQQMFQNVTCN-IAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKEL---VLKKQSELEEIC 329 (727)
Q Consensus 257 LW~~L---~ip~EEr~~F~~~~~~-i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkel---I~k~R~ELeeLW 329 (727)
||..+ ..+.+..+........ ..+...+..-+-+++...+..+..-++.+..-....+..+ +.++..+|.++=
T Consensus 332 i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~ 411 (650)
T TIGR03185 332 LLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVD 411 (650)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666 5555544343332211 1111112222445666666666665555542111222222 356666777776
Q ss_pred HhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004858 330 RKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILE 382 (727)
Q Consensus 330 dk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile 382 (727)
+++.-.++.- .+... .+-++.++.++..++..+...+.-++
T Consensus 412 ~~l~~~~~~e-~i~~l-----------~e~l~~l~~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 412 KKISTIPSEE-QIAQL-----------LEELGEAQNELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHhcCCChH-HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665433321 11111 23355566666666665554433333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.78 E-value=16 Score=46.10 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 004858 296 IDHVEAEVTRLE 307 (727)
Q Consensus 296 Ie~le~EV~RLe 307 (727)
+..++.++.+++
T Consensus 910 ~~~l~~~l~~l~ 921 (1179)
T TIGR02168 910 RSELRRELEELR 921 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.60 E-value=20 Score=46.21 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 004858 362 QIELQIAKAKEEA 374 (727)
Q Consensus 362 ~~E~EI~rLke~~ 374 (727)
..+.+|.+++...
T Consensus 946 ~~~~~i~~le~~i 958 (1163)
T COG1196 946 ELEREIERLEEEI 958 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555553
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.39 E-value=27 Score=46.85 Aligned_cols=148 Identities=14% Similarity=0.247 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLE 130 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~ 130 (727)
+...+++..+.+..+...-.+++.++.+++.+++--.......+.....+..+|..++..++++.....+-..+...+..
T Consensus 1194 l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~ 1273 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQN 1273 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44457777778888888888899999999998874332211122233345556666666666655543333333333333
Q ss_pred HHHHHHHHhccCCCccccccccccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Q 004858 131 QIQMIKNEIYRSTIYISSKTVVDETGLS--LRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFK 202 (727)
Q Consensus 131 qI~~Lc~eL~g~~~~~~~~~~vd~~dLS--~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~ 202 (727)
+...+...+... .... ... ..+.+ ..+|+.++.+++.-...+......+..+...+..|-..+..+.+
T Consensus 1274 E~~~l~~~lee~-e~~~--~~~-~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e 1343 (1930)
T KOG0161|consen 1274 ENEELSRQLEEA-EAKL--SAL-SRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQE 1343 (1930)
T ss_pred hHHHHhhHhHHH-HHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322110 0000 000 01111 25677777777777777888888888888887777777776554
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.35 E-value=21 Score=45.36 Aligned_cols=35 Identities=6% Similarity=0.101 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 161 KLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCS 195 (727)
Q Consensus 161 ~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~ 195 (727)
.+..++..+..++.+...-...+..+...+..+-.
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 833 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444445444444444433
No 14
>PRK11637 AmiB activator; Provisional
Probab=92.87 E-value=21 Score=40.70 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 100 LKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
++.+++.+...++.++.+-.+-..++...+..+......+
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555444444444444444444444444433
No 15
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.51 E-value=30 Score=41.66 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Q 004858 294 DFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNH 333 (727)
Q Consensus 294 d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~ 333 (727)
..++.++.-...|..++.......+..+..++.+++..+.
T Consensus 480 ~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~ 519 (650)
T TIGR03185 480 RAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLM 519 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666667777777666666777777777777664
No 16
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.05 E-value=32 Score=43.21 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 155 TGLSLRKLEEFHRELHELQKEKSDRMKQVQD 185 (727)
Q Consensus 155 ~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~e 185 (727)
.+...++++.++.-+..+..++++=..++..
T Consensus 332 ~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~ 362 (1074)
T KOG0250|consen 332 VDAQDEEIEEARKDLDDLRREVNDLKEEIRE 362 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334466666666666555544443333333
No 17
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.66 E-value=33 Score=40.29 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 004858 224 DTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPI 265 (727)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~ 265 (727)
++|+.+...+..++.+-.....+++..+..-.++|..++...
T Consensus 453 ~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~ 494 (581)
T KOG0995|consen 453 STIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEI 494 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666777777778887776633
No 18
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.58 E-value=48 Score=42.03 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHH
Q 004858 222 SDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEA 301 (727)
Q Consensus 222 S~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~ 301 (727)
++.++.+++..+..|+.+...-..++..|...+..+=.++.--..+...+.+...++.. -+.++...++.
T Consensus 933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~----------~~~~~k~~~e~ 1002 (1293)
T KOG0996|consen 933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKK----------ELRDLKSELEN 1002 (1293)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 34555666666666655555555555555555544444433322233333333333222 12344444444
Q ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHHHHH
Q 004858 302 EVTRLEELKSSK--MKELVLKKQSELEEIC 329 (727)
Q Consensus 302 EV~RLeeLK~~~--mkelI~k~R~ELeeLW 329 (727)
.-+.+.+||..+ |+..+++.+.+|.++=
T Consensus 1003 i~k~~~~lk~~rId~~~K~e~~~~~l~e~~ 1032 (1293)
T KOG0996|consen 1003 IKKSENELKAERIDIENKLEAINGELNEIE 1032 (1293)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 444555555543 4445556666665553
No 19
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.42 E-value=26 Score=43.47 Aligned_cols=206 Identities=15% Similarity=0.197 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-------HH
Q 004858 50 VYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSD-------RK 122 (727)
Q Consensus 50 vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~e-------R~ 122 (727)
+|.+-+++++....+|-..-..+-.+-..+.+++.- .......+..++..|...|..|+.+|+. -+
T Consensus 227 iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~-------~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~ 299 (1200)
T KOG0964|consen 227 IYDRELNEINGELERLEEDRSSAPEESEQYIDALDK-------VEDESEDLKCEIKELENKLTNLREEKEQLKARETKIS 299 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777776665555544433333333333333321 1122334555555555555555554433 34
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccc----c-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 123 EQFVQVLEQIQMIKNEIYRSTIYISSKTV----V-DETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVL 197 (727)
Q Consensus 123 ~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~----v-d~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~L 197 (727)
++-..|.-+|..+..+|.+.......... + +.-.=..+.|..+...-..|..+-+.=...+..+.++-..|...=
T Consensus 300 k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq 379 (1200)
T KOG0964|consen 300 KKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ 379 (1200)
T ss_pred HHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777788888888765321110000 0 000011233444444444444433333333444555545555544
Q ss_pred CCC--hh---hhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004858 198 GMD--FK---LTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMD 262 (727)
Q Consensus 198 g~d--~~---~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ 262 (727)
|-- |. .....++.-+..-.....=+....+.|+..+..++.+...+.++++.+-..|.+.=.+|.
T Consensus 380 gr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~ 449 (1200)
T KOG0964|consen 380 GRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRME 449 (1200)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH
Confidence 421 11 000011100000000112245667889999999999999999988888877776555554
No 20
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.38 E-value=51 Score=41.96 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 004858 222 SDDTIEQLTTAIQKLREVKIQRMQKLQDLAT-TMLELW 258 (727)
Q Consensus 222 S~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~-~L~eLW 258 (727)
+..++.++...+..+++++..+.+.+.+... .+..-|
T Consensus 635 L~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~ 672 (1317)
T KOG0612|consen 635 LEETLKAGKKELLKVEELKRENQERISDSEKEALEIKL 672 (1317)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888899998889888888877655 444444
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.38 E-value=67 Score=43.33 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 54 KVDEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 54 kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
-+++.+..++.+-..++....|+..+-..++
T Consensus 1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e 1086 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLE 1086 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555555555444
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.20 E-value=60 Score=42.46 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHH
Q 004858 294 DFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEE 373 (727)
Q Consensus 294 d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~ 373 (727)
+....++.++..++........++ .+++.+|..+=+.+. ... +..+-+++|...+.++..+...
T Consensus 591 ~~~~~~~~el~~~e~~l~~~~~~l-~~~~~eL~~~~~~i~-~~~--------------~~~~~~~~L~~~~~~l~~~~~~ 654 (1311)
T TIGR00606 591 DRLAKLNKELASLEQNKNHINNEL-ESKEEQLSSYEDKLF-DVC--------------GSQDEESDLERLKEEIEKSSKQ 654 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-cCC--------------CchhHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555545453 666666666555554 100 0112256899999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhHHHHHHHHHcCChh-hhhcCCCCchhchHHH------HHHHHhhhhhHHHHHHHHHHHHHHH
Q 004858 374 AFSRKDILEKIDKWLAACEEESWLEDYNRDEN-RYNAGRGSHLILKRAE------KARSLVNKLPGMVETLASKTIAWET 446 (727)
Q Consensus 374 ~~srK~Ile~Vekw~~l~eE~~~LE~~~kDpn-R~~nrrGah~~LlrEE------K~Rk~v~KLPklee~L~~~l~~WE~ 446 (727)
+...+..-..+.+|.....+ ..++. .+- .|+=. ..++ +.+..+.++|...+.+...+..|+.
T Consensus 655 ~~~~~~~~~~~~k~ie~a~~-------~~~~~C~LC-~R~f~---~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~ 723 (1311)
T TIGR00606 655 RAMLAGATAVYSQFITQLTD-------ENQSCCPVC-QRVFQ---TEAELQEFISDLQSKLRLAPDKLKSTESELKKKEK 723 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhh-------ccCCcCCCC-CCCCC---ChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 98888888888888533311 12221 122 22210 1222 2233455688889999999999988
Q ss_pred HcC
Q 004858 447 ERG 449 (727)
Q Consensus 447 e~g 449 (727)
..+
T Consensus 724 ~~e 726 (1311)
T TIGR00606 724 RRD 726 (1311)
T ss_pred HHH
Confidence 643
No 23
>PRK11637 AmiB activator; Provisional
Probab=90.95 E-value=28 Score=39.69 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
.++++|+.++.+++.+.++..+-..+..++..++..+-..|
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555554455555555555555544
No 24
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.74 E-value=53 Score=41.01 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
-|..+|+.++..+-.|+.+-++....+.++..+|+.+-.++
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~ 214 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEI 214 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777766665555555555555555444
No 25
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.72 E-value=27 Score=37.66 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 47 CLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFV 126 (727)
Q Consensus 47 ~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~ 126 (727)
++..|-.+|-........|...|..+... .|..+ .........++..++..|+.+..++..-.-++.
T Consensus 12 Rla~YIekVr~LE~~N~~Le~~i~~~~~~-------~~~~~------~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~ 78 (312)
T PF00038_consen 12 RLASYIEKVRFLEQENKRLESEIEELREK-------KGEEV------SRIKEMYEEELRELRRQIDDLSKEKARLELEID 78 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhc-------ccccC------cccccchhhHHHHhHHhhhhHHHHhhHHhhhhh
Confidence 55566666666555444444444433322 11110 011223455566666666666666666656666
Q ss_pred HHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 127 QVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVL 197 (727)
Q Consensus 127 ~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~L 197 (727)
.+...+..+-..+... ......+...+..|++..+.=...-.++.+.|..|..+|
T Consensus 79 ~l~~e~~~~r~k~e~e----------------~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEE----------------LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 6666655555544211 133344444444444444444444444444444444444
No 26
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.64 E-value=29 Score=37.75 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCcccc-------ccccccCCCCHHHHHHHHH
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRS----TIYISS-------KTVVDETGLSLRKLEEFHR 167 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~----~~~~~~-------~~~vd~~dLS~e~LeeL~~ 167 (727)
.+..+.+.+..+|.+++..+.+--..+..+...+..+...+.+. .+.... .......+||++.=..+-.
T Consensus 59 elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq 138 (294)
T COG1340 59 ELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQ 138 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 45555566666666666666555555555555555555544311 110000 0001235777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 004858 168 ELHELQKEKSDRMK 181 (727)
Q Consensus 168 ~L~~Lq~EK~~Rl~ 181 (727)
.+..|++++..+.+
T Consensus 139 ~I~~L~k~le~~~k 152 (294)
T COG1340 139 KIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776653
No 27
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.46 E-value=53 Score=40.57 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcc
Q 004858 314 MKELVLKKQSELEEICRKNHMVPE 337 (727)
Q Consensus 314 mkelI~k~R~ELeeLWdk~~~s~e 337 (727)
..+++..+...|.++-|.-.-+.+
T Consensus 530 fRelva~Lqdqlqe~~dq~~Ssee 553 (1243)
T KOG0971|consen 530 FRELVAHLQDQLQELTDQQESSEE 553 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHH
Confidence 456666777777777775554433
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.46 E-value=70 Score=41.91 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHH
Q 004858 36 KDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMR 115 (727)
Q Consensus 36 Rd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLr 115 (727)
|.+++.+|.. ++.|....+.....+....+.|..+..++..+-. .+++...++..+..++
T Consensus 171 rk~~~d~if~--~~~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~------------------~~~~~~~ir~~l~~~q 230 (1311)
T TIGR00606 171 LKQKFDEIFS--ATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQ------------------YKEKACEIRDQITSKE 230 (1311)
T ss_pred HHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHH
Confidence 4445544442 3568888888888888888888888888876644 3344445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 116 KRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHL 187 (727)
Q Consensus 116 k~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~ 187 (727)
.+.+.-..+...+..++..+...+..- .-....+..+...+..++..+..+......+.
T Consensus 231 ~kie~~~~~~~~le~ei~~l~~~~~~l-------------~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~ 289 (1311)
T TIGR00606 231 AQLESSREIVKSYENELDPLKNRLKEI-------------EHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444444444444444433110 00123445566666666555544444444433
No 29
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.14 E-value=69 Score=41.39 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=7.0
Q ss_pred HHHHHHHcCCeeEE
Q 004858 441 TIAWETERGVEFLY 454 (727)
Q Consensus 441 l~~WE~e~g~pFl~ 454 (727)
|-+--.-+-.||.+
T Consensus 1080 lFAi~~~~PaPf~v 1093 (1163)
T COG1196 1080 LFAIQKYRPAPFYV 1093 (1163)
T ss_pred HHHHHhhCCCCeee
Confidence 33444445566664
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.06 E-value=13 Score=40.77 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH---
Q 004858 103 ELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDR--- 179 (727)
Q Consensus 103 qL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~R--- 179 (727)
+|+.++..|..+...-+.+.+++.+++.++..+-..|.. ..++..++...+.++++....+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~----------------~~~~k~~l~~eI~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE----------------LEEQKQELLAEIAEAEKIREECRGW 273 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555555555555555555555555555555554421 1144566666677766655533
Q ss_pred -HHHHHHHHHHHHHHHHHhCCChhh
Q 004858 180 -MKQVQDHLNTLNSFCSVLGMDFKL 203 (727)
Q Consensus 180 -l~kv~el~~~I~~L~~~Lg~d~~~ 203 (727)
..++..++..+..|....|..+..
T Consensus 274 t~~Ev~~Lk~~~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKLTGWKIVS 298 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHCcEEEE
Confidence 346888888888888888887643
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.81 E-value=31 Score=40.56 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICS 81 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~ 81 (727)
.++.|++....++.+...|..+..|+..+..
T Consensus 97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~ 127 (546)
T KOG0977|consen 97 ARKLLDETARERAKLEIEITKLREELKELRK 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4556666666666666666666666666544
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.74 E-value=33 Score=37.05 Aligned_cols=80 Identities=23% Similarity=0.379 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 49 QVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQV 128 (727)
Q Consensus 49 ~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l 128 (727)
.-+++.|+.....++++.-.+..+..++..+-..+...- .....++.++..++..++.....+.+--.++..+
T Consensus 57 ~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~-------~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L 129 (312)
T PF00038_consen 57 RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL-------AERKDLEEELESLRKDLDEETLARVDLENQIQSL 129 (312)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHH
Confidence 446778888888888888888888888888766554210 1123456666666666666666655555555555
Q ss_pred HHHHHHH
Q 004858 129 LEQIQMI 135 (727)
Q Consensus 129 ~~qI~~L 135 (727)
+.+|.-+
T Consensus 130 ~eEl~fl 136 (312)
T PF00038_consen 130 KEELEFL 136 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.18 E-value=75 Score=40.40 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004858 224 DTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMD 262 (727)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ 262 (727)
..|.-.+..+.+.+++-.--...+.....++.+||.+|.
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666677777888888888765
No 34
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.37 E-value=24 Score=37.06 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 47 CLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFV 126 (727)
Q Consensus 47 ~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~ 126 (727)
++.=++.++.+..+.+.+|++.++.++.|-.. |..|+...+.|..+|....+++.
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~-------------------------L~e~~kE~~~L~~Er~~h~eeLr 56 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEEKC-------------------------LEEYRKEMEELLQERMAHVEELR 56 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777788877888887777766544321 45566667777777777777777
Q ss_pred HHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhh
Q 004858 127 QVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSV-LGMDFKL 203 (727)
Q Consensus 127 ~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~-Lg~d~~~ 203 (727)
.+...|..|=+.|-. +....+..+..+..+..| +.-++..|..+-.+ +|++.-.
T Consensus 57 qI~~DIn~lE~iIkq----------------a~~er~~~~~~i~r~~ee-------y~~Lk~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 57 QINQDINTLENIIKQ----------------AESERNKRQEKIQRLYEE-------YKPLKDEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcCCCCCC
Confidence 777777776665521 112333444444444444 44555555566566 8877643
No 35
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=87.89 E-value=28 Score=39.82 Aligned_cols=172 Identities=17% Similarity=0.229 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCC-CHHHHHHHHHHHHHHH
Q 004858 159 LRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSI-SDDTIEQLTTAIQKLR 237 (727)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~L-S~~tL~~L~~~l~~Le 237 (727)
...+..|+..|..|+.-+..-...+...+..|..-...+- . .+... ...+=..+..-...|.
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k----~-------------~s~~~~~~~~R~~~~~~k~~L~ 212 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVK----S-------------ASTNASGDSNRAYMESGKKKLS 212 (424)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-------------hhccccccchhHHHHHHHHHHH
Confidence 4677777777777777776665555544444332211110 0 00111 2233444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHH
Q 004858 238 EVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKEL 317 (727)
Q Consensus 238 eeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkel 317 (727)
..-..-..++.+|-..|..| |....+.-| .+ +..-++.+..++.++..-=. .|+.+
T Consensus 213 ~~sd~Ll~kVdDLQD~VE~L----------RkDV~~Rgv--Rp-----------~~~qle~v~kdi~~a~~~L~-~m~~~ 268 (424)
T PF03915_consen 213 EESDRLLTKVDDLQDLVEDL----------RKDVVQRGV--RP-----------SPKQLETVAKDISRASKELK-KMKEY 268 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHH------------------HHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHcCC--cC-----------CHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55555555555555555444 334444333 32 45778888888888765443 58999
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 004858 318 VLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWL 388 (727)
Q Consensus 318 I~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile~Vekw~ 388 (727)
|...+--|..+|..-. +.+.. -.++|...|.-+..|++-+..-.++|.+|+++-
T Consensus 269 i~~~kp~WkKiWE~EL---------~~V~e--------EQqfL~~QedL~~DL~eDl~k~~etf~lveq~~ 322 (424)
T PF03915_consen 269 IKTEKPIWKKIWESEL---------QKVCE--------EQQFLKLQEDLLSDLKEDLKKASETFALVEQCT 322 (424)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCHHHHHHHHHHH---------HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998543 33321 146677788889999999999999999999873
No 36
>PF13514 AAA_27: AAA domain
Probab=87.83 E-value=95 Score=39.95 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 50 VYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVL 129 (727)
Q Consensus 50 vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~ 129 (727)
..+..+++.....+.+...++.+......+|..+|. |.. | .....+......+....+.+.....+.-.......
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~-p~~---p-~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1111)
T PF13514_consen 561 EARARLARAQARLAAAEAALAALEAAWAALWAAAGL-PLS---P-AEMRDWLARREAALEAAEELRAARAELEALRARRA 635 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666677777788888888888899994 432 2 33344555555555555555554444333333333
Q ss_pred HHHHHHHHHhccCCCcccccccc-------ccCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 004858 130 EQIQMIKNEIYRSTIYISSKTVV-------DETGLSLRKLEEFHRELHELQKEKSDRM-------KQVQDHLNTLNSFCS 195 (727)
Q Consensus 130 ~qI~~Lc~eL~g~~~~~~~~~~v-------d~~dLS~e~LeeL~~~L~~Lq~EK~~Rl-------~kv~el~~~I~~L~~ 195 (727)
.-...|...|............+ +...=...+++.+...+..++.+...+. ..+..........+.
T Consensus 636 ~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~ 715 (1111)
T PF13514_consen 636 AARAALAAALAALGPAEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALA 715 (1111)
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332111100000000 0000011233333444444444444333 334455555555556
Q ss_pred HhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004858 196 VLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTA---IQKLREVKIQRMQKLQDLATTMLELWNLMDTP 264 (727)
Q Consensus 196 ~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~---l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip 264 (727)
.+|++..-....+.. ..+.+..+... +..++.....-...+..+..++..||..++.+
T Consensus 716 ~~gL~~~~~~~~~~~-----------~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~ 776 (1111)
T PF13514_consen 716 ELGLPADASPEEALE-----------ALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPD 776 (1111)
T ss_pred hCCCCCCCCHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 666665421111100 12333444433 33333333344445567888999999998873
No 37
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=87.79 E-value=1.1e+02 Score=40.84 Aligned_cols=82 Identities=16% Similarity=0.273 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 46 ECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQF 125 (727)
Q Consensus 46 e~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef 125 (727)
+.++.|++.++........|...|......+..+..+|.-. ...+..+...|+.|+.++.-+..-+
T Consensus 696 ~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a--------------~~k~~~le~ev~~LKqE~~ll~~t~ 761 (1822)
T KOG4674|consen 696 KNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSA--------------NEKLEKLEAELSNLKQEKLLLKETE 761 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888899998888888888887632 2335677788999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 004858 126 VQVLEQIQMIKNEIYR 141 (727)
Q Consensus 126 ~~l~~qI~~Lc~eL~g 141 (727)
..+..+...||.+..+
T Consensus 762 ~rL~~e~~~l~~e~~~ 777 (1822)
T KOG4674|consen 762 ERLSQELEKLSAEQES 777 (1822)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997743
No 38
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.43 E-value=89 Score=39.21 Aligned_cols=183 Identities=13% Similarity=0.187 Sum_probs=95.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 004858 97 AGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTI-YISSKTVVDETGLSLRKLEEFHRELHELQKE 175 (727)
Q Consensus 97 ~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~-~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~E 175 (727)
+-.|..+++.+..++++-.++-+.|.++|..++-+...+-.++...-. ... .......-...+..++..+...+.+
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~---~~~~~~~l~~e~~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQ---LEKQISSLKSELGNLEAKVDKVEKD 865 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 334555667777777777777777777777777777777776631100 000 0000000112333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---hhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 176 KSDRMKQVQDHLNTLNSFCSVLGMD---FKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLAT 252 (727)
Q Consensus 176 K~~Rl~kv~el~~~I~~L~~~Lg~d---~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~ 252 (727)
...-++++.+....+..+-.+++.- .+... ....-....+.+|...+.+++.++..-..++..+..
T Consensus 866 ~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~-----------~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~ 934 (1174)
T KOG0933|consen 866 VKKAQAELKDQKAKQRDIDTEISGLLTSQEKCL-----------SEKSDGELERKKLEHEVTKLESEKANARKEVEKLLK 934 (1174)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHH-----------HHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 3334444444444333333333211 00000 012334466888999999999988888888777776
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHH
Q 004858 253 TMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKS 311 (727)
Q Consensus 253 ~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~ 311 (727)
+.. | =.+|...|...-.. -++...+...+..++.+|++.+.
T Consensus 935 k~~--w-----i~~ek~~fgk~gt~-----------yDf~~~~p~~are~l~~Lq~k~~ 975 (1174)
T KOG0933|consen 935 KHE--W-----IGDEKRLFGKKGTD-----------YDFESYDPHEAREELKKLQEKKE 975 (1174)
T ss_pred hcc--c-----hhHHHHhhcCCCCc-----------cccccCCHhHHHHHHHHhhHHHH
Confidence 653 2 22677788653222 12344455566777766666553
No 39
>PRK09039 hypothetical protein; Validated
Probab=86.98 E-value=39 Score=37.56 Aligned_cols=133 Identities=12% Similarity=0.198 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004858 63 AHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRS 142 (727)
Q Consensus 63 ~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~ 142 (727)
..+-+.|+++..+|..|-..|+..- .....|+.++..++.+++.++..+++ +...+...+.
T Consensus 49 ~~~~~eL~~L~~qIa~L~e~L~le~-------~~~~~l~~~l~~l~~~l~~a~~~r~~-------Le~~~~~~~~----- 109 (343)
T PRK09039 49 SGKDSALDRLNSQIAELADLLSLER-------QGNQDLQDSVANLRASLSAAEAERSR-------LQALLAELAG----- 109 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhh-----
Confidence 3455777777888888877777532 33457888888888888877666653 2222221111
Q ss_pred CCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCC
Q 004858 143 TIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSIS 222 (727)
Q Consensus 143 ~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS 222 (727)
....-..++..+...|...+.+..+-..+|.-+..+|..|=..
T Consensus 110 -----------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------------------------- 152 (343)
T PRK09039 110 -----------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ-------------------------- 152 (343)
T ss_pred -----------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------------------------
Confidence 1112346777788888888888888888888888887776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 223 DDTIEQLTTAIQKLREVKIQRMQKLQDLATTM 254 (727)
Q Consensus 223 ~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L 254 (727)
|..|+..+...+.....-..++.++...|
T Consensus 153 ---la~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 153 ---LAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554444
No 40
>PRK02224 chromosome segregation protein; Provisional
Probab=86.37 E-value=96 Score=38.54 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 160 RKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSF 193 (727)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L 193 (727)
+.|++++..++.++.....-...+..+...|..+
T Consensus 412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444444444444443
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.19 E-value=47 Score=40.32 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 58 ANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIK 136 (727)
Q Consensus 58 ~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (727)
.+..+.+|.+.+..+...++.|-..|+.-- -..++-+.+++.++.+.|.+..+..+...++++++..+..|.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr-------~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~ 506 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVR-------VDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLA 506 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhe-------eccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556677777777777777766665211 223455555555555555555555555555555555544443
No 42
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=86.02 E-value=60 Score=35.80 Aligned_cols=114 Identities=10% Similarity=0.070 Sum_probs=68.0
Q ss_pred HHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ccccccccc
Q 004858 75 ELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTI-YISSKTVVD 153 (727)
Q Consensus 75 EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~-~~~~~~~vd 153 (727)
+...+....|..-...+....-...|..++..|+..|+....--..-...|.....-+.-||. ... .....|...
T Consensus 106 ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~----~~~~l~~~~Ps~~ 181 (342)
T cd08915 106 EDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCG----GYKELKAFIPSPY 181 (342)
T ss_pred hhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcC----ChHHHHHhCCCcc
Confidence 334455566653221111223345788889999999988777666655666666555555553 211 001111111
Q ss_pred -cCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 154 -ETGLS-LRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNS 192 (727)
Q Consensus 154 -~~dLS-~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~ 192 (727)
..+.+ ...+..|+..|..|..-+.+|...+.+++..++.
T Consensus 182 ~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ 222 (342)
T cd08915 182 PALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRN 222 (342)
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11112 3678899999999999999999999888777543
No 43
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=85.54 E-value=63 Score=35.69 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=67.2
Q ss_pred HHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCC
Q 004858 77 AAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETG 156 (727)
Q Consensus 77 ~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~d 156 (727)
..+....|..|. ...-..+|..++..|+..|+....-=..-...|.....-+.-||.....-..+.+.....+ .+
T Consensus 110 ~~~R~k~G~~~~----S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~-~~ 184 (337)
T cd09234 110 KEFQEAVGKRGS----SIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPSPSLLD-RP 184 (337)
T ss_pred HHHHHHcCCCCC----chhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCCccccC-Cc
Confidence 334455675421 1122457999999999999987776555555566666555555542110001122111111 11
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 157 LSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNS 192 (727)
Q Consensus 157 LS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~ 192 (727)
-....+..|+..|..+..-+.+|...+.+++..++.
T Consensus 185 ~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~ 220 (337)
T cd09234 185 EDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIHE 220 (337)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 234678889999999999999999998888777554
No 44
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=84.09 E-value=53 Score=33.91 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHhcC
Q 004858 297 DHVEAEVTRLEELKSSKMKELVL-------KKQSELEEICRKNH 333 (727)
Q Consensus 297 e~le~EV~RLeeLK~~~mkelI~-------k~R~ELeeLWdk~~ 333 (727)
+.+..||.|.+.-|..-|+..+. ....++.++|..++
T Consensus 171 ~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~ 214 (216)
T cd07627 171 ELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFY 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567788887777665555443 24557788887654
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.02 E-value=1.6e+02 Score=39.13 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004858 167 RELHELQKEKSDRMKQVQDHLNTLNSFCSVLG 198 (727)
Q Consensus 167 ~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg 198 (727)
..+..++.+.+.-......+......++...|
T Consensus 456 ~qL~elE~kL~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 456 EELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33334444444444444444455445555554
No 46
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.76 E-value=22 Score=39.85 Aligned_cols=104 Identities=15% Similarity=0.314 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLE 130 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~ 130 (727)
||..++++..++..|-..+.+....|..|-.+++-.-. + ..-++ +.|..+++.+..++.....++.+++.
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~le------k--I~sRE--k~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLE------K--IESRE--KYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH------H--HHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999998888874211 0 11122 45566677666666666666666666
Q ss_pred HHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004858 131 QIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRM 180 (727)
Q Consensus 131 qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl 180 (727)
+.......+... ...|.++...|+..+.+.++|-
T Consensus 288 ~y~~~s~~V~~~----------------t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 288 KYKQASEGVSER----------------TRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHHhhHHHHH----------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 666655543211 1456666666666666666663
No 47
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=83.56 E-value=1.4e+02 Score=37.92 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 004858 429 KLPGMVETLASKTIAWET 446 (727)
Q Consensus 429 KLPklee~L~~~l~~WE~ 446 (727)
.+-.-++.|...+.+|+.
T Consensus 969 ~l~~~i~~lg~aiee~~~ 986 (1179)
T TIGR02168 969 EARRRLKRLENKIKELGP 986 (1179)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 344455555556666543
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.46 E-value=1.1e+02 Score=36.52 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHhHhCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 12 ETTSGSLIEQLQIIWDEVGETD-TDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 12 ~~~c~s~L~eLq~IWdEIG~~e-~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
.........+++.=||+|--.. .+=+..|..++..+ -+-.+-.++..-..+.+.|..++.++..|..+|.
T Consensus 59 ~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~---~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~ 129 (569)
T PRK04778 59 TGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELN---DKFRFRKAKHEINEIESLLDLIEEDIEQILEELQ 129 (569)
T ss_pred CcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567788889999854322 22344555555422 2223444444555666666666667776666664
No 49
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=83.24 E-value=1.4e+02 Score=37.89 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 004858 464 DEYTILRQEKEQER 477 (727)
Q Consensus 464 ee~~~~r~eKE~ek 477 (727)
++|..+..+.+.-.
T Consensus 986 ~~~~~l~~q~~dl~ 999 (1164)
T TIGR02169 986 KRLDELKEKRAKLE 999 (1164)
T ss_pred HHHHHHHHHHHHHH
Confidence 45544444444333
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.05 E-value=79 Score=34.79 Aligned_cols=77 Identities=10% Similarity=0.035 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC-CCCCC----CCccccCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 64 HLRQTIADYEAELAAICSAMAEP-PVHNR----QSDQTAGNLKEELRNILPQLE--EMRKRKSDRKEQFVQVLEQIQMIK 136 (727)
Q Consensus 64 ~L~qsIa~~~~EL~~L~~eLGe~-p~~~~----~~d~~~~~LkeqL~~i~~~LE--eLrk~K~eR~~ef~~l~~qI~~Lc 136 (727)
.|.+.|.+.+.-+..+-.+.... |..+. -.+.....+..|+..++..-. .-..-++=|++-+..++..+..-.
T Consensus 79 EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~ 158 (325)
T PF08317_consen 79 ELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENL 158 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666665555432 21110 011223356666766665533 333446668888888888888877
Q ss_pred HHhc
Q 004858 137 NEIY 140 (727)
Q Consensus 137 ~eL~ 140 (727)
..|.
T Consensus 159 ~~L~ 162 (325)
T PF08317_consen 159 ELLQ 162 (325)
T ss_pred HHHH
Confidence 7663
No 51
>PRK10869 recombination and repair protein; Provisional
Probab=82.66 E-value=1.1e+02 Score=36.24 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 101 KEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKN 137 (727)
Q Consensus 101 keqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~ 137 (727)
-.++..+...+++++....+|.+++.-+.-|+..|-.
T Consensus 163 y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 163 YQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777777777777778888777777765
No 52
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=82.64 E-value=86 Score=34.92 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHhHhCCChhHHHH-----HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 004858 13 TTSGSLIEQLQIIWDEVGETDTDKDK-----MLLELEQECLQ--------VYRRKVDEANRCRAHLRQTIADYEAEL--- 76 (727)
Q Consensus 13 ~~c~s~L~eLq~IWdEIG~~e~eRd~-----ml~elEqe~l~--------vyr~kVde~~~~k~~L~qsIa~~~~EL--- 76 (727)
.....+=..|...-+++++|..-..- .=..|-++|-+ .+.+.+++..+.+.+....+.++..-|
T Consensus 25 ~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E 104 (353)
T cd09236 25 DELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQEDGLERIRASLDDVARLAASDRAILEEAMDILDDE 104 (353)
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777776653210 00001123322 244555555555555444444444333
Q ss_pred ----HHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccc
Q 004858 77 ----AAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVV 152 (727)
Q Consensus 77 ----~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~v 152 (727)
..+....|...........-..+|..++..|+..|+....-=..-...|.....-|.-||.-...-..+.+.....
T Consensus 105 ~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~ 184 (353)
T cd09236 105 ASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENFVPSSRRP 184 (353)
T ss_pred HhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCC
Confidence 3455556642222111223345788899999999997766655556666666666666654110000011210111
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 153 DETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNS 192 (727)
Q Consensus 153 d~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~ 192 (727)
....-....+..|+..|.+|..-+.+|...+.+++..++.
T Consensus 185 ~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~~ 224 (353)
T cd09236 185 SIPPELERHVRALRVSLEELDRLESRRRRKVERARTKARA 224 (353)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111224788999999999999999999999998877554
No 53
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.50 E-value=1.1e+02 Score=36.17 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 004858 156 GLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQK 235 (727)
Q Consensus 156 dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~ 235 (727)
+...++|++++.++..++..+..--..+.++...+..+-.+|..-. -+.+.++.|+..+..
T Consensus 297 ~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~-------------------~~~~~le~L~~el~~ 357 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLD-------------------DSDESLEALEEEVDK 357 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh-------------------CCHHHHHHHHHHHHH
Confidence 4556888888888888877665555555555555555555544210 022445555555555
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHhcCCCH
Q 004858 236 LREVKI--------QRMQKLQDLATTMLELWNLMDTPI 265 (727)
Q Consensus 236 LeeeK~--------~R~~kl~~L~~~L~eLW~~L~ip~ 265 (727)
+++... .|.+....+...+...-..|+++.
T Consensus 358 l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~~ 395 (563)
T TIGR00634 358 LEEELDKAAVALSLIRRKAAERLAKRVEQELKALAMEK 395 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 544433 233334567778888888888874
No 54
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.40 E-value=98 Score=35.41 Aligned_cols=180 Identities=16% Similarity=0.254 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHH
Q 004858 37 DKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRK 116 (727)
Q Consensus 37 d~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk 116 (727)
++.+.++.+++ .-.++.+.+..+.++.|.+.|++++.++..|-.+|-... ....-+...++.+...++.|+.
T Consensus 37 ~~~l~q~q~ei-~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~-------~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 37 DKQLKQIQKEI-AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA-------DDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHhhHHHHHHHHHHHHH
Confidence 34455555543 456778888888999999999999999999999886532 2233566777888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 117 RKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRK---LEEFHRELHELQKEKSDRMKQVQDHLNTLNSF 193 (727)
Q Consensus 117 ~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~---LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L 193 (727)
++.+| ...|-.++.-+.- .+..|+. ---++.+. -..+..++..+..+..+|...+......|...
T Consensus 109 q~r~q---r~~La~~L~A~~r-~g~~p~~--------~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~ 176 (420)
T COG4942 109 QEREQ---RRRLAEQLAALQR-SGRNPPP--------ALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAV 176 (420)
T ss_pred HHHHH---HHHHHHHHHHHHh-ccCCCCc--------hhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 77444 3333333333333 3222211 01122222 24556666677777666666666666655544
Q ss_pred HHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 194 CSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTM 254 (727)
Q Consensus 194 ~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L 254 (727)
-..+.-.-.. ....+........+|.....+|.+.+..+-..+
T Consensus 177 ~~~iaaeq~~------------------l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l 219 (420)
T COG4942 177 RAEIAAEQAE------------------LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSEL 219 (420)
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222111 124455555666666655555555555555544
No 55
>PLN03188 kinesin-12 family protein; Provisional
Probab=82.23 E-value=1.7e+02 Score=37.95 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhc
Q 004858 296 IDHVEAEVTRLEELKSSK-MKELVLKKQSELEEICRKN 332 (727)
Q Consensus 296 Ie~le~EV~RLeeLK~~~-mkelI~k~R~ELeeLWdk~ 332 (727)
....+.|.+|+.-++.+. --.+.+.+|.+|+. |+.+
T Consensus 1044 ~~e~~l~~er~~w~e~es~wislteelr~eles-~r~l 1080 (1320)
T PLN03188 1044 SPEKKLEQERLRWTEAESKWISLAEELRTELDA-SRAL 1080 (1320)
T ss_pred chhHHHHHHHHHHHHHhhhheechHHHHHHHHH-HHHH
Confidence 334555677766665542 33445777888877 6543
No 56
>PF13514 AAA_27: AAA domain
Probab=82.11 E-value=1.7e+02 Score=37.81 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh-----cccccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 004858 160 RKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLT-----VSQIHPSFGNSEGSRSISDDTIEQLTTAIQ 234 (727)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~-----v~ev~psl~e~~~~~~LS~~tL~~L~~~l~ 234 (727)
+.+......+..++.....-...+..+...+..|+..++.+.... +..+..-+.. ..-....+..+...+.
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~----a~~~~~~~~~l~~~~~ 811 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEE----AREAQEERERLQEQLE 811 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344444455666666666666677788888888888888753321 0000000000 0001133444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004858 235 KLREVKIQRMQKLQDLATTMLELWNLMDTP 264 (727)
Q Consensus 235 ~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip 264 (727)
.++....+-...+..+...+..|+...++.
T Consensus 812 ~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~ 841 (1111)
T PF13514_consen 812 ELEEELEQAEEELEELEAELAELLEQAGVE 841 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 555555555555566666666666665554
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.69 E-value=1.2e+02 Score=36.00 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHH-----
Q 004858 39 MLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEE----- 113 (727)
Q Consensus 39 ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEe----- 113 (727)
++.+++.+. +.+..++++.=..-..+...+-+-..+|..-+..|-...|+.. ...+..+++.++.++..
T Consensus 199 ~l~~l~~~~-~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~-----~~~i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 199 ILDQLEEEL-AALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLD-----HLDIEKEIQDLKEQIDENLALL 272 (569)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCC-----CCChHHHHHHHHHHHHHHHHHH
Confidence 333444322 3344444444333334444444444555666666655555442 12344444444444443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004858 114 --MRKRKSDRKEQFVQVLEQIQMIKNEIY 140 (727)
Q Consensus 114 --Lrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (727)
+.-... -..+..+..+|..|++.|.
T Consensus 273 ~~l~l~~~--~~~~~~i~~~Id~Lyd~le 299 (569)
T PRK04778 273 EELDLDEA--EEKNEEIQERIDQLYDILE 299 (569)
T ss_pred HhcChHHH--HHHHHHHHHHHHHHHHHHH
Confidence 322221 2446667777777777664
No 58
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=81.55 E-value=91 Score=34.46 Aligned_cols=197 Identities=16% Similarity=0.168 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcc--cc-CCHHHHHHHHHH----------HHH
Q 004858 46 ECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQ--TA-GNLKEELRNILP----------QLE 112 (727)
Q Consensus 46 e~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~--~~-~~LkeqL~~i~~----------~LE 112 (727)
+...+|....++.- |. ....+..+-.++....+.|++|.......+. ++ .+|.+.-..++. .+.
T Consensus 6 ~a~S~Y~E~ka~lv--r~-~~~~~e~~~~~l~~~L~slnLP~~~~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~~~ 82 (337)
T cd09234 6 EASSLYSEEKAKLL--RE-VVSEIEDKDEELDQFLSSLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTIKNLVEAMG 82 (337)
T ss_pred HHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHhcCCChhhhhccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHH
Confidence 46678888877753 33 3778888999999999999998642211111 11 123333233322 222
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHhccCCCcccccccccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 113 EMRKRKSD---RKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDE-TGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLN 188 (727)
Q Consensus 113 eLrk~K~e---R~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~-~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~ 188 (727)
+|...+.. -+.+...+......=|..+- ..|+.. +.... +..-..++..|+..|..-..-=..=..++..+
T Consensus 83 ~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R--~k~G~~-~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~-- 157 (337)
T cd09234 83 ELSDVYQDVEAMLNEIESLLEEEELQEKEFQ--EAVGKR-GSSIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLH-- 157 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHcCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--
Confidence 22222222 22222222222222222221 012210 00000 00112344444444444433222222333333
Q ss_pred HHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 189 TLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTML 255 (727)
Q Consensus 189 ~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~ 255 (727)
......|+.+.... ....|+.... . .+-....+..|+..+.+|+.++.+|...+.+|+.+++
T Consensus 158 --~~~l~lL~~~~~~l-~~~iPs~~~~-~-~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 158 --IANLKLLAGPLDEL-QKKLPSPSLL-D-RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred --HHHHHHHcCcHHHH-HhhCCCcccc-C-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445554443332 2223432111 1 1134567999999999999999999999998877653
No 59
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.55 E-value=1.3e+02 Score=36.26 Aligned_cols=109 Identities=25% Similarity=0.391 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 55 VDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQM 134 (727)
Q Consensus 55 Vde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~ 134 (727)
|......|...+..|..++..|..|-..+..++.+ +...++...+ ..+...++.|+++++.-..++......-+.
T Consensus 38 v~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~----~~pa~pse~E-~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~ 112 (617)
T PF15070_consen 38 VRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP----EPPAGPSEVE-QQLQAEAEHLRKELESLEEQLQAQVENNEQ 112 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc----cccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888999999999998888876532 2234454444 345556666766655544444443322222
Q ss_pred HHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 135 IKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQ 184 (727)
Q Consensus 135 Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~ 184 (727)
|.. |... -.++|.+|...++.++....+|.+.+.
T Consensus 113 Ls~-L~~E---------------qEerL~ELE~~le~~~e~~~D~~kLLe 146 (617)
T PF15070_consen 113 LSR-LNQE---------------QEERLAELEEELERLQEQQEDRQKLLE 146 (617)
T ss_pred HHH-HHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 2100 126677777777777776666554433
No 60
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.31 E-value=1.4e+02 Score=36.58 Aligned_cols=118 Identities=12% Similarity=0.155 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 118 KSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVL 197 (727)
Q Consensus 118 K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~L 197 (727)
-++|++++.+.++.|.+=|+.+...... ....+|..+ .++..+|+.++.+...=...+.+++.++......+
T Consensus 598 LaeR~e~a~d~Qe~L~~R~~~vl~~l~~-------~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 598 LAERYEEAKDKQEKLMKRVDRVLQLLNS-------QLPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666766666666655555332211 123456544 45555566655544332223333333333322222
Q ss_pred CCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 198 GMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTM 254 (727)
Q Consensus 198 g~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L 254 (727)
. . ... ....+..|+......++..+.+.-++=.+-+++++.+...+
T Consensus 670 ~-~-~~~---------~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 670 E-S-QKS---------PKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred h-c-ccc---------ccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 0 000 00124568899999998888888766666666666655443
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.78 E-value=1.2e+02 Score=35.40 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhHHHHHHHH
Q 004858 360 LEQIELQIAKAKEEAFSR-KDILEKIDKWLAACEEESWLED 399 (727)
Q Consensus 360 Le~~E~EI~rLke~~~sr-K~Ile~Vekw~~l~eE~~~LE~ 399 (727)
+..++.+|..|+...... .++-++.++|..+..+...++.
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777766544 5666777777777766666543
No 62
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.54 E-value=1.3e+02 Score=35.45 Aligned_cols=247 Identities=18% Similarity=0.220 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHhHhCCChhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004858 14 TSGSLIEQLQIIWDEVGETDTD--------KDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAE 85 (727)
Q Consensus 14 ~c~s~L~eLq~IWdEIG~~e~e--------Rd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe 85 (727)
+...+=.+|..||.++.-=++- =...|...+.|. ..++..+++.=..-+.+.+.+-.=...|..=|..|-+
T Consensus 165 ~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~-~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~ 243 (570)
T COG4477 165 AAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHM-IALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKE 243 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 3344445666777655311111 112444444432 3334444443333334444444444444555566644
Q ss_pred CCCCCCC--CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccc-cCCCCHHHH
Q 004858 86 PPVHNRQ--SDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVD-ETGLSLRKL 162 (727)
Q Consensus 86 ~p~~~~~--~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd-~~dLS~e~L 162 (727)
..++... -|...-.|++++....+.+..|.-.. --.++..++..|+.+++-|.+.-.-.. .+. ..+...+.|
T Consensus 244 ~gY~l~~~~id~~~~~L~~~l~~~~~~l~~Leld~--aeeel~~I~e~ie~lYd~lE~EveA~~---~V~~~~~~l~~~l 318 (570)
T COG4477 244 EGYHLEHVNIDSRLERLKEQLVENSELLTQLELDE--AEEELGLIQEKIESLYDLLEREVEAKN---VVEENLPILPDYL 318 (570)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHhHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCcchHHHH
Confidence 4444321 12223345555544444444433222 235677888889999887754321000 121 234455677
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHH-------HHHHHHHHHHHHhC---CChhhh---cccccCCCCCCCCCC
Q 004858 163 EEFHRELHELQKEKSDRMK----------QVQ-------DHLNTLNSFCSVLG---MDFKLT---VSQIHPSFGNSEGSR 219 (727)
Q Consensus 163 eeL~~~L~~Lq~EK~~Rl~----------kv~-------el~~~I~~L~~~Lg---~d~~~~---v~ev~psl~e~~~~~ 219 (727)
...+.....|+.|...=.+ .+. ++.+.+..+-..++ +.+... +..+...+ .
T Consensus 319 ~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l------~ 392 (570)
T COG4477 319 EKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKAL------T 392 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH------H
Confidence 7776666666655432111 122 22222222222222 111110 00000000 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHh
Q 004858 220 SISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLM------DTPIEEQQMFQN 273 (727)
Q Consensus 220 ~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L------~ip~EEr~~F~~ 273 (727)
++ .+....++..+..|++.-.+-.+.+..+..+|+.+-.+| |+|+.....|.+
T Consensus 393 ~i-~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~ 451 (570)
T COG4477 393 DI-EDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFT 451 (570)
T ss_pred HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHh
Confidence 01 133445555666666655555556666777776665444 788887777765
No 63
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.48 E-value=1e+02 Score=33.87 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 004858 218 SRSISDDTIEQLTTAIQKLRE 238 (727)
Q Consensus 218 ~~~LS~~tL~~L~~~l~~Lee 238 (727)
..+.|..-+..|+..++.|+.
T Consensus 265 ~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 265 CRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 356677777777777777643
No 64
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=78.51 E-value=75 Score=34.64 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 004858 105 RNILPQLEEMRKRKSDRK------EQFVQVLEQIQMIKN 137 (727)
Q Consensus 105 ~~i~~~LEeLrk~K~eR~------~ef~~l~~qI~~Lc~ 137 (727)
..+...+..|+++...+. ..+.++..++..+-.
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~ 172 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKK 172 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544432 334444444444444
No 65
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.13 E-value=2.4e+02 Score=37.29 Aligned_cols=127 Identities=14% Similarity=0.166 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC--CccccCCHHHHHHHHHHHHHH
Q 004858 36 KDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQ--SDQTAGNLKEELRNILPQLEE 113 (727)
Q Consensus 36 Rd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~--~d~~~~~LkeqL~~i~~~LEe 113 (727)
|.++|.+|+.+| .+.....+.+-..|+.+.+.+..|-.+..--|....- .......-...+......++.
T Consensus 740 R~~ri~el~~~I--------aeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~ 811 (1353)
T TIGR02680 740 RLRRIAELDARL--------AAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELAR 811 (1353)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777655 3333334445555555666666666665432321100 000011112235566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 004858 114 MRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKS 177 (727)
Q Consensus 114 Lrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~ 177 (727)
.+.+.......+.....++...|.++...... +...--...|+.|...++.|+....
T Consensus 812 a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~-------~~l~~~~~aL~~y~~~l~~l~~~~~ 868 (1353)
T TIGR02680 812 AARKAAAAAAAWKQARRELERDAADLDLPTDP-------DALEAVGLALKRFGDHLHTLEVAVR 868 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888888888888877432210 0111123455556666655544433
No 66
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=77.99 E-value=1.2e+02 Score=33.74 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c---CCCcc
Q 004858 73 EAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIY---R---STIYI 146 (727)
Q Consensus 73 ~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~---g---~~~~~ 146 (727)
..+...+....|.. ........-..+|+.++..|+..|+....-=..-...|......|.-||.-.. . .|...
T Consensus 100 ~~ed~~~R~k~g~~-Wtr~~S~~~~~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~p~~~ 178 (356)
T cd09237 100 MKEIEKMRKKILAK-WTQSPSSSLTASLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSG 178 (356)
T ss_pred HHHHHHHHHHHhcc-cccccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhcCCCCC
Confidence 34445566666752 11111223345799999999999998777666656667777777776664111 0 01100
Q ss_pred ccccccccCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 147 SSKTVVDETGLS------LRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNS 192 (727)
Q Consensus 147 ~~~~~vd~~dLS------~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~ 192 (727)
...+.+.+.|.+ ...+..|+..|..|+.-+.+|...+.+++..++.
T Consensus 179 ~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~ 230 (356)
T cd09237 179 SPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHN 230 (356)
T ss_pred CCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000111111111 3578899999999999999999999999887654
No 67
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.54 E-value=2.1e+02 Score=36.33 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcch---h-hhhhHHHH--hhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004858 314 MKELVLKKQSELEEICRKNHMVPEN---D-SSMEYTLE--AIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKW 387 (727)
Q Consensus 314 mkelI~k~R~ELeeLWdk~~~s~ee---R-~af~~~~~--~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile~Vekw 387 (727)
+...|+++..++..|-..|-++.=. . ...+..+. -|+.+. .+.++. +..+|....+......|-+..+++.
T Consensus 882 ~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~-L~~~y~--L~~kl~e~~~~l~~~~Pn~kA~~~~ 958 (1141)
T KOG0018|consen 882 IESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSG-LPREYK--LQQKLEEKQSVLNRIAPNLKALERL 958 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceeccccccc-ccHHHH--HHHHHHHHHHHHHHhCcchHHHhhh
Confidence 5667788888888888888654321 1 00000000 011111 234444 6777777777777778888777777
Q ss_pred HHHh
Q 004858 388 LAAC 391 (727)
Q Consensus 388 ~~l~ 391 (727)
..+.
T Consensus 959 d~v~ 962 (1141)
T KOG0018|consen 959 DEVR 962 (1141)
T ss_pred hhHH
Confidence 6554
No 68
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.31 E-value=1.5e+02 Score=34.35 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 56 DEANRCRAHLRQTIADYEAELAAICSAMAEPP-VHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQM 134 (727)
Q Consensus 56 de~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p-~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~ 134 (727)
.+.+.........+...++.+..|...++..+ ............+..+|..++.++..+...+-+..-.+.+++.+|..
T Consensus 207 ~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~ 286 (498)
T TIGR03007 207 SEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQ 286 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 33444444455556666667777777666422 21100112234688889999999999999999888899999999999
Q ss_pred HHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004858 135 IKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLG 198 (727)
Q Consensus 135 Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg 198 (727)
+-..+.....-... ...........+..+...+..++.+...-..++..+..++..+-..++
T Consensus 287 l~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 287 LEEQKEEEGSAKNG--GPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHhhcccccc--CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877432110000 000111111224666677777777777666666677776666555444
No 69
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=75.26 E-value=1.4e+02 Score=33.18 Aligned_cols=197 Identities=15% Similarity=0.186 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCc------------cccCCHHHHHHHHHHHH
Q 004858 46 ECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHN--RQSD------------QTAGNLKEELRNILPQL 111 (727)
Q Consensus 46 e~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~--~~~d------------~~~~~LkeqL~~i~~~L 111 (727)
+...+|....++. .|.. +..+..+-.++..+...|++|..-. ..+. .+...+...+..+....
T Consensus 6 ea~S~YsE~ka~l--vr~e-~~~~e~a~~~~~~~L~~lnLP~sL~~l~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~l~ 82 (356)
T cd09237 6 EKESLYSEEKAKL--LRAE-VERVEVANEEYASFLEYLNLPKLLVDLKERFEGENELMEIVSGLKSSSVDSQLELLRPQS 82 (356)
T ss_pred HHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHcCCcHHHHHHhhhcCCchhHHHHHHhccCCCcchhHHHhHHHH
Confidence 3567787777665 3344 4778888888899999888863110 0000 01112222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 112 EEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLS---LRKLEEFHRELHELQKEKSDRMKQVQDHLN 188 (727)
Q Consensus 112 EeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS---~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~ 188 (727)
......-.+-...+..=..++..+...++ . .+.. .....++ .+++..|+..|..-..-=.. +.....
T Consensus 83 ~~~~~~l~~~~~~L~~E~~ed~~~R~k~g-~-~Wtr----~~S~~~~~~l~~~~~k~~~~L~~A~~SD~~----l~~~~~ 152 (356)
T cd09237 83 ASWVNEIDSSYNDLDEEMKEIEKMRKKIL-A-KWTQ----SPSSSLTASLREDLVKLKKSLVEASASDEK----LFSLVD 152 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-cccc----ccchhhhHHHHHHHHHHHHHHHHHHhhHHH----HHHHHH
Confidence 33323323333333333334444444442 1 1111 1111222 24555555555444333333 333333
Q ss_pred HHHHHHHHhCCChhhhcccc-cC-------CCCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 189 TLNSFCSVLGMDFKLTVSQI-HP-------SFGNSEGSR-S-ISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTML 255 (727)
Q Consensus 189 ~I~~L~~~Lg~d~~~~v~ev-~p-------sl~e~~~~~-~-LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~ 255 (727)
.+......|+.+.......+ .| ++.+...+. . =-...+..|+..+.+|+.+|.+|...+.+|+.+++
T Consensus 153 ~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~ 229 (356)
T cd09237 153 PVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIH 229 (356)
T ss_pred HHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445544333211101 01 222111000 0 01346899999999999999999999999988664
No 70
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.06 E-value=65 Score=31.85 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004858 63 AHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRS 142 (727)
Q Consensus 63 ~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~ 142 (727)
+.+.+.+..+..+=.-++...|=.-++...-+.....-.+++..+...+.+|+.+-.+-..+...+..++..|...
T Consensus 33 ~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~---- 108 (169)
T PF07106_consen 33 TAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE---- 108 (169)
T ss_pred HHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 3444444444444344444555433222100111112345577777777777766655555555555555555442
Q ss_pred CCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCC
Q 004858 143 TIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSIS 222 (727)
Q Consensus 143 ~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS 222 (727)
||.+ +|...+..|+.+...-..++..+... ...+|
T Consensus 109 --------------~t~~---el~~~i~~l~~e~~~l~~kL~~l~~~----------------------------~~~vs 143 (169)
T PF07106_consen 109 --------------PTNE---ELREEIEELEEEIEELEEKLEKLRSG----------------------------SKPVS 143 (169)
T ss_pred --------------CCHH---HHHHHHHHHHHHHHHHHHHHHHHHhC----------------------------CCCCC
Confidence 2333 44555555555433322222222211 12367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 223 DDTIEQLTTAIQKLREVKIQRMQKL 247 (727)
Q Consensus 223 ~~tL~~L~~~l~~LeeeK~~R~~kl 247 (727)
.+-+.++......+..+...|...|
T Consensus 144 ~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 144 PEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888888888877776543
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.01 E-value=2.7e+02 Score=35.33 Aligned_cols=36 Identities=36% Similarity=0.222 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004858 292 SVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEI 328 (727)
Q Consensus 292 S~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeL 328 (727)
+...+..++.||.+++.-++..-++ |.++..+..-|
T Consensus 904 ~~l~~kkle~e~~~~~~e~~~~~k~-v~~l~~k~~wi 939 (1174)
T KOG0933|consen 904 GELERKKLEHEVTKLESEKANARKE-VEKLLKKHEWI 939 (1174)
T ss_pred ccchHHHHHhHHHHhhhhHHHHHHH-HHHHHHhccch
Confidence 3467899999999999999875554 36666665544
No 72
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=72.06 E-value=2.8e+02 Score=35.13 Aligned_cols=103 Identities=9% Similarity=0.161 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004858 160 RKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREV 239 (727)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~Leee 239 (727)
+.|+.|+..++.|.+..+ |+.+...++..|.-|-..+-.-........ +..--...+.-...+..|.+.+.-+...
T Consensus 202 ~~l~~L~~~~~~l~kdVE-~~rer~~~~~~Ie~l~~k~~~v~y~~~~~e---y~~~k~~~~r~k~~~r~l~k~~~pi~~~ 277 (1072)
T KOG0979|consen 202 EKLNRLEDEIDKLEKDVE-RVRERERKKSKIELLEKKKKWVEYKKHDRE---YNAYKQAKDRAKKELRKLEKEIKPIEDK 277 (1072)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccchHhhhHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 667777777777776654 555555566665444332222111110000 0000001111223344444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 004858 240 KIQRMQKLQDLATTMLELWNLMDTPIE 266 (727)
Q Consensus 240 K~~R~~kl~~L~~~L~eLW~~L~ip~E 266 (727)
+..-...+.++.++|...|+.|.....
T Consensus 278 ~eeLe~~~~et~~~~s~~~~~~~e~~~ 304 (1072)
T KOG0979|consen 278 KEELESEKKETRSKISQKQRELNEALA 304 (1072)
T ss_pred hhhHHhHHHhHHHHHHHHHHHHHHHHH
Confidence 555555566778888888888876443
No 73
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=72.03 E-value=2.2e+02 Score=33.89 Aligned_cols=71 Identities=14% Similarity=0.283 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHHHHhHhCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 11 EETTSGSLIEQLQIIWDEVGET-DTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 11 ~~~~c~s~L~eLq~IWdEIG~~-e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
+...+...+.+++.=|++|--. =.+-+.+|.++|.. +.+-.+-.++..-..+.+.|..++.++..|..+|.
T Consensus 54 l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~---~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~ 125 (560)
T PF06160_consen 54 LTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEY---ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELD 125 (560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677889999999998732 23345566666652 22333444455555667777777777777777665
No 74
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.13 E-value=2.9e+02 Score=34.94 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhh
Q 004858 299 VEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRK 378 (727)
Q Consensus 299 le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK 378 (727)
+..|++++-..|.. ..++|.|+.+--+.+...+++ +|... .+.-+.+|+..+..=-..|+.+-..+|
T Consensus 907 ~dKe~Ek~~~rk~~-----Ll~KreE~~ekIr~lG~Lp~d--af~ky------~~~~~~el~kkL~~~neelk~ys~VNK 973 (1200)
T KOG0964|consen 907 FDKELEKLVRRKHM-----LLKKREECCEKIRELGVLPED--AFEKY------QDKKSKELMKKLHRCNEELKGYSNVNK 973 (1200)
T ss_pred hhHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCchH--HHHHh------ccCCHHHHHHHHHHHHHHHhhcchhhH
Confidence 33666666555543 345777776666666877765 67653 234567787777777777888877777
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 004858 379 DILEKIDKWLAACEEESWL 397 (727)
Q Consensus 379 ~Ile~Vekw~~l~eE~~~L 397 (727)
--|+ .|.+.-++...|
T Consensus 974 kAld---Qf~nfseQre~L 989 (1200)
T KOG0964|consen 974 KALD---QFVNFSEQRESL 989 (1200)
T ss_pred HHHH---HHHHHHHHHHHH
Confidence 6554 444444444444
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.25 E-value=3.8e+02 Score=35.91 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHhCCChhHHH
Q 004858 15 SGSLIEQLQIIWDEVGETDTDKD 37 (727)
Q Consensus 15 c~s~L~eLq~IWdEIG~~e~eRd 37 (727)
....+.+...--++|-.+..+|+
T Consensus 235 m~~~l~~~r~t~~~~~~tq~drd 257 (1486)
T PRK04863 235 MEAALRENRMTLEAIRVTQSDRD 257 (1486)
T ss_pred HHHHHHHHHHHHHHHHhCccHHH
Confidence 34556666666666666666654
No 76
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=69.88 E-value=1.6e+02 Score=31.41 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 185 DHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATT 253 (727)
Q Consensus 185 el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~ 253 (727)
.....+......|+.+..... ...|+...... .-....+..|+..+.+++.++.+|..-+..+...
T Consensus 105 ~~~~~~~~~l~~L~~~~~~L~-~~lp~~~~~~~--~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~ 170 (296)
T PF13949_consen 105 SKLESIEENLELLSGPIEELE-ASLPSSSPSDS--PQVSEVIRQLRELLNKLEELKKEREELLEQLKEK 170 (296)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH-HHS--B---SS--GSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChhhHH-hhCCCCCcccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444566776655432 12243332111 2237889999999999999999999888777653
No 77
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=69.71 E-value=47 Score=38.12 Aligned_cols=141 Identities=19% Similarity=0.291 Sum_probs=75.4
Q ss_pred HHHHHHH-HHHHHHH--HHHH-HHHHHHHHHHHHHHHHHhhCCCCCCC--C--CCccccCCHHHHHHHHHHHHHHHHHHH
Q 004858 47 CLQVYRR-KVDEANR--CRAH-LRQTIADYEAELAAICSAMAEPPVHN--R--QSDQTAGNLKEELRNILPQLEEMRKRK 118 (727)
Q Consensus 47 ~l~vyr~-kVde~~~--~k~~-L~qsIa~~~~EL~~L~~eLGe~p~~~--~--~~d~~~~~LkeqL~~i~~~LEeLrk~K 118 (727)
|-++|-. +|.+... .|.+ ++.-|..++..+..|.. +.+-+ . +.++.+..|++-|+....+|.+-+++|
T Consensus 338 ~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIe----dKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eK 413 (527)
T PF15066_consen 338 CSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIE----DKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEK 413 (527)
T ss_pred hccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----hHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 6666544 5665442 2222 34455555555555543 21111 0 123455567777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH----HHHhccCCCccccccccccCCCCH-----HHHHHHH--------HHHHHHHHHHHHHHH
Q 004858 119 SDRKEQFVQVLEQIQMI----KNEIYRSTIYISSKTVVDETGLSL-----RKLEEFH--------RELHELQKEKSDRMK 181 (727)
Q Consensus 119 ~eR~~ef~~l~~qI~~L----c~eL~g~~~~~~~~~~vd~~dLS~-----e~LeeL~--------~~L~~Lq~EK~~Rl~ 181 (727)
+.-.-+|+.++..-..| ..+|.....+..-...+ +..||. ++|..++ +-|+-|+.||..|.+
T Consensus 414 etLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEm-dk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~Eq 492 (527)
T PF15066_consen 414 ETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEM-DKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQ 492 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766666555443322 23332111110000001 122332 3444444 456788899999999
Q ss_pred HHHHHHHHHHH
Q 004858 182 QVQDHLNTLNS 192 (727)
Q Consensus 182 kv~el~~~I~~ 192 (727)
+|..+..+.+.
T Consensus 493 efLslqeEfQk 503 (527)
T PF15066_consen 493 EFLSLQEEFQK 503 (527)
T ss_pred HHHHHHHHHHH
Confidence 99988877544
No 78
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=68.26 E-value=2e+02 Score=32.01 Aligned_cols=197 Identities=12% Similarity=0.162 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCccccCCHHHH---------HHHHHHHHHHH
Q 004858 46 ECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHN--RQSDQTAGNLKEE---------LRNILPQLEEM 114 (727)
Q Consensus 46 e~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~--~~~d~~~~~Lkeq---------L~~i~~~LEeL 114 (727)
+...+|+...++. .++.+...|..+-.++......|++|..-. ..+..-..+|.+. ++.|...+.+|
T Consensus 6 ea~s~Y~erk~~l--Vr~~~~~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l 83 (353)
T cd09236 6 LAISIYDDRKDRL--VNESIIDELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQEDGLERIRASLDDV 83 (353)
T ss_pred HHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3667888887776 456667888899999999999999864211 0011011123331 23333444444
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 115 RKRKS---DRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSL-------RKLEEFHRELHELQKEKSDRMKQVQ 184 (727)
Q Consensus 115 rk~K~---eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~-------e~LeeL~~~L~~Lq~EK~~Rl~kv~ 184 (727)
.+.+. +.+.+...+......=|..+-. -|+.. .. ...+|. .++.+|+..|+.-..-=.. +.
T Consensus 84 ~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~--k~g~~--~W-tr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~----v~ 154 (353)
T cd09236 84 ARLAASDRAILEEAMDILDDEASEDESLRR--KFGTD--RW-TRPDSHEANPKLYTQAAEYEGYLKQAGASDEL----VR 154 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HcCCC--CC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHH----HH
Confidence 44432 2333333333333333332211 12210 00 012333 4455555555433322222 33
Q ss_pred HHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 185 DHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTML 255 (727)
Q Consensus 185 el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~ 255 (727)
.....+......|..+.... ....|+......... ....+..|+..+.+|+.+|.+|...+.+|+.+++
T Consensus 155 ~k~~~~~~~l~lL~~~~~~l-~~~~Ps~~~~~~~~~-~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 155 RKLDEWEDLIQILTGDERDL-ENFVPSSRRPSIPPE-LERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred HHHHHHHHHHHHHcCCHHHH-HHhCCCCCCCCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455565444432 223343221111111 2367999999999999999999999999887654
No 79
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=68.14 E-value=2.8e+02 Score=33.56 Aligned_cols=104 Identities=14% Similarity=0.242 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 004858 65 LRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTI 144 (727)
Q Consensus 65 L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~ 144 (727)
|..+|..+..|-+.....|.. ....|++....+...|..|+.+|..-+..+..|..+|..|-..+...+.
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~----------e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~ 71 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKE----------ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP 71 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 455666666666665555542 1235788888889999999999999999999999999999888854331
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 145 YISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQD 185 (727)
Q Consensus 145 ~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~e 185 (727)
.. ....+|... ..|+..+..|+++++.=..++..
T Consensus 72 ~~------~pa~pse~E-~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 72 PE------PPAGPSEVE-QQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred cc------ccccchHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 123445433 45666666666665544444433
No 80
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.93 E-value=2e+02 Score=31.75 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC-CCCC----CCCccccCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 64 HLRQTIADYEAELAAICSAMAEP-PVHN----RQSDQTAGNLKEELRNILPQ--LEEMRKRKSDRKEQFVQVLEQIQMIK 136 (727)
Q Consensus 64 ~L~qsIa~~~~EL~~L~~eLGe~-p~~~----~~~d~~~~~LkeqL~~i~~~--LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (727)
.|.+.|.+.+.-+..+-.+.-.. |-.+ ..++..-..+..|+..++.+ ++.-..-++=|++-+..++..+..-.
T Consensus 74 EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~ 153 (312)
T smart00787 74 ELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENL 153 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776666666665432 2110 01222233455666666554 44444556668888888888888877
Q ss_pred HHh
Q 004858 137 NEI 139 (727)
Q Consensus 137 ~eL 139 (727)
..|
T Consensus 154 ~~l 156 (312)
T smart00787 154 EGL 156 (312)
T ss_pred HHH
Confidence 766
No 81
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=67.31 E-value=1.5e+02 Score=30.33 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 52 RRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQ 131 (727)
Q Consensus 52 r~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~q 131 (727)
.+.|+-+...-++|...|.++..++..+-.++.. .-.+.++|..++.-+-.+...+..-+.+-..+..+
T Consensus 28 ~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~-----------aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE 96 (193)
T PF14662_consen 28 QRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK-----------AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKE 96 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445566777777777777766655542 13677888888888888888888888888888888
Q ss_pred HHHHHHHhc
Q 004858 132 IQMIKNEIY 140 (727)
Q Consensus 132 I~~Lc~eL~ 140 (727)
.+.|..+|+
T Consensus 97 ~q~L~~~i~ 105 (193)
T PF14662_consen 97 QQSLVAEIE 105 (193)
T ss_pred HHHHHHHHH
Confidence 888888774
No 82
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=66.95 E-value=23 Score=43.20 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 219 RSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELW 258 (727)
Q Consensus 219 ~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW 258 (727)
+..+.+-+..|+..+..|+.+...-.+++..|..+|..++
T Consensus 498 ~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~ 537 (722)
T PF05557_consen 498 LSSLSEELNELQKEIEELERENERLRQELEELESELEKLT 537 (722)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566777888888887777666666666666666654
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.57 E-value=2.8e+02 Score=32.98 Aligned_cols=38 Identities=11% Similarity=0.315 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 100 LKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKN 137 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~ 137 (727)
|+..++.++..+.+|...+..+-+.+..++.+|..--.
T Consensus 271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEe 308 (581)
T KOG0995|consen 271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEE 308 (581)
T ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44445566667777776666665555555554444333
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.41 E-value=2.9e+02 Score=33.20 Aligned_cols=243 Identities=18% Similarity=0.204 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHH
Q 004858 224 DTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEV 303 (727)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV 303 (727)
.-++.|+..++.|......-...+..+...+..++.....-..+...-...+. ++. =..+.+...+.=|
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~----------k~~~lL~d~e~ni 396 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKK----------KTVELLPDAEENI 396 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----------HHHHHhcCcHHHH
Confidence 34667777777777666666666666777776666655443333222211111 000 0112233334444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004858 304 TRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEK 383 (727)
Q Consensus 304 ~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile~ 383 (727)
.+|+.+-......+ .+|..-|...-.+-.+...-... .. .+--......+..++......+.|..-
T Consensus 397 ~kL~~~v~~s~~rl-----~~L~~qWe~~R~pL~~e~r~lk~-----~~----~~~~~e~~~~~~~ik~~r~~~k~~~~e 462 (594)
T PF05667_consen 397 AKLQALVEASEQRL-----VELAQQWEKHRAPLIEEYRRLKE-----KA----SNRESESKQKLQEIKELREEIKEIEEE 462 (594)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHH-----HH----hhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555443333 35666677655443332211100 00 000111223445566666666777777
Q ss_pred HHHHHHHhHH-HHHHHHHcCChhh--hhcCCCCchhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHcCCeeEECCch--
Q 004858 384 IDKWLAACEE-ESWLEDYNRDENR--YNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVR-- 458 (727)
Q Consensus 384 Vekw~~l~eE-~~~LE~~~kDpnR--~~nrrGah~~LlrEEK~Rk~v~KLPklee~L~~~l~~WE~e~g~pFl~dG~~-- 458 (727)
+..|.....+ ...++.-.+|.|| |+ +.-+-+-..-.|++.-|.|+-.=...|...|..-...-.+.|.|-..-
T Consensus 463 ~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt--~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElif 540 (594)
T PF05667_consen 463 IRQKEELYKQLVKELEKLPKDVNRSAYT--RRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIF 540 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7777665544 3458888999998 54 222222334445555555544444445555555444445555543322
Q ss_pred --------------HHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 459 --------------LHSML-DEYTILRQEKEQERRRQRDQKKLKEQLIAE 493 (727)
Q Consensus 459 --------------lLe~l-ee~~~~r~eKE~ek~r~R~~kK~q~q~~~e 493 (727)
+|.-| +.+..+-+-=+.-=.-.|+..-++.|+.+|
T Consensus 541 rdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e 590 (594)
T PF05667_consen 541 RDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTE 590 (594)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 23444 344444444443333445555666664443
No 85
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=65.36 E-value=1e+02 Score=30.54 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccch--------------hhhh-------ccCCCc-HHHHHHHHHHHH
Q 004858 247 LQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASE--------------REIT-------ERNTLS-VDFIDHVEAEVT 304 (727)
Q Consensus 247 l~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~--------------~e~~-------~~~~LS-~d~Ie~le~EV~ 304 (727)
.+..+.+|.+||+.|++|.=.|-.|.-.+.|-.+.- +... +...+| ..++.++..|-+
T Consensus 2 Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER~ 81 (161)
T PF11995_consen 2 FERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRERE 81 (161)
T ss_pred hHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHHH
Confidence 345678999999999999998888855444322110 1111 112233 346777777666
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhh
Q 004858 305 RLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSM 342 (727)
Q Consensus 305 RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af 342 (727)
-|-..-..++ .+.|.++|+-+..++.+..+.-
T Consensus 82 ~L~k~m~~rl------s~eere~ly~kWgI~l~sK~Rr 113 (161)
T PF11995_consen 82 MLAKQMQKRL------SREEREELYKKWGIPLDSKQRR 113 (161)
T ss_pred HHHHHHHHhC------CHHHHHHHHHhcCCCCcchHHH
Confidence 5533222222 2357888999999998876653
No 86
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=64.49 E-value=3.6e+02 Score=33.54 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 104 LRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQV 183 (727)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv 183 (727)
+..++..++.+..+-+.-.+.+....+.|..|...|.+...- . . ...+...-..++.++..++..|+..++.+-...
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~-~-~-~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~ 206 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLS-A-E-AEEEDNEALRRIREAEARIMRLESLLERKEKEH 206 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-c-c-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555554444555666777777777777432110 0 0 011122334678888888888888888887777
Q ss_pred HHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004858 184 QDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDT 263 (727)
Q Consensus 184 ~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~i 263 (727)
..++.+++.-+ .+.+... .-..|+..|+.=...-..-...+.++-..|..|=..+++
T Consensus 207 ~~~r~~l~~~~---~~~~~~a--------------------~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~ 263 (775)
T PF10174_consen 207 MEAREQLHRRL---QMERDDA--------------------ETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGEL 263 (775)
T ss_pred hhhhHHHHHHh---hcCCCch--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666655533 2222111 111333333322222222223345577788888888888
Q ss_pred CHHHHHHH
Q 004858 264 PIEEQQMF 271 (727)
Q Consensus 264 p~EEr~~F 271 (727)
...+|+.-
T Consensus 264 ~~~~r~~~ 271 (775)
T PF10174_consen 264 SEADRDRL 271 (775)
T ss_pred cccchHHH
Confidence 87776433
No 87
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=63.87 E-value=2e+02 Score=30.36 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHhcC
Q 004858 296 IDHVEAEVTRLEELKSSKMKELVLK-------KQSELEEICRKNH 333 (727)
Q Consensus 296 Ie~le~EV~RLeeLK~~~mkelI~k-------~R~ELeeLWdk~~ 333 (727)
-+....||.|.+.-|..-|+..|.. ...++.++|...+
T Consensus 186 s~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~ 230 (234)
T cd07664 186 SKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456788888888877665555543 5668889998765
No 88
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=63.40 E-value=4.2e+02 Score=33.92 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHH
Q 004858 220 SISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHV 299 (727)
Q Consensus 220 ~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~l 299 (727)
.|.+..+....+.+..|+.++-+++- ++...+..+-+.|..=+--|+.=...+. +| ++|.++ .-|+.+
T Consensus 1175 kL~dAyl~eitKqIsaLe~e~PKnlt---dvK~missf~d~laeiE~LrnErIKkHG---aS----kePLDl--SDlDkL 1242 (1439)
T PF12252_consen 1175 KLYDAYLVEITKQISALEKEKPKNLT---DVKSMISSFNDRLAEIEFLRNERIKKHG---AS----KEPLDL--SDLDKL 1242 (1439)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCCchh---hHHHHHHHHHhhhhHHHHHHHHHhhccC---CC----CCccch--hhHHHH
Confidence 35567777778888888876666555 4444444555554432111222222221 22 245555 567888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchh---hhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHh
Q 004858 300 EAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPEND---SSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFS 376 (727)
Q Consensus 300 e~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR---~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~s 376 (727)
...|+++.+ ...+.+|...|.-|..+=-+.| ..++. ..|+....+. ...|..+.-+....+|.++++++-.
T Consensus 1243 k~~LQ~iNQ---~LV~~LIn~iR~slnqme~~tf-~~q~~eiq~n~~ll~~L~--~tlD~S~~a~Kqk~di~kl~~~lv~ 1316 (1439)
T PF12252_consen 1243 KGQLQKINQ---NLVKALINTIRVSLNQMEVKTF-EEQEKEIQQNLQLLDKLE--KTLDDSDTAQKQKEDIVKLNDFLVE 1316 (1439)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHHHH
Confidence 876666655 4456677777777766653333 22221 2233332221 1346678888889999999988744
Q ss_pred h
Q 004858 377 R 377 (727)
Q Consensus 377 r 377 (727)
.
T Consensus 1317 k 1317 (1439)
T PF12252_consen 1317 K 1317 (1439)
T ss_pred H
Confidence 3
No 89
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=63.30 E-value=3.2e+02 Score=32.51 Aligned_cols=180 Identities=12% Similarity=0.142 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 49 QVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQV 128 (727)
Q Consensus 49 ~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l 128 (727)
..|-.+|-.++..- ..+..+|..|....|-+...+ ...-..++...+.-|++-.+.+..-..+|..+
T Consensus 52 A~YIekVR~LEaqN-------~~L~~di~~lr~~~~~~ts~i------k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl 118 (546)
T KOG0977|consen 52 AVYIEKVRFLEAQN-------RKLEHDINLLRGVVGRETSGI------KAKYEAELATARKLLDETARERAKLEIEITKL 118 (546)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHhhccCCCcch------hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555443322 334445555555555332111 11233446677777777777777777777777
Q ss_pred HHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc
Q 004858 129 LEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQI 208 (727)
Q Consensus 129 ~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev 208 (727)
..++..+...+.....-.. ..-.+.+--...|..++..+..++..+..=..++..++.++..|+..|+---.....
T Consensus 119 ~~e~~elr~~~~~~~k~~~--~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~-- 194 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERR--GAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD-- 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--
Confidence 7777777765532110000 000011112345555555555555555555556666666666666665521111000
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 209 HPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTM 254 (727)
Q Consensus 209 ~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L 254 (727)
...+-.+.-.+.+.++++|.-.+......|.+.+...
T Consensus 195 ---------Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 195 ---------ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred ---------HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 0112234445556666666666665555555544433
No 90
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.92 E-value=3.9e+02 Score=33.42 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 62 RAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMI 135 (727)
Q Consensus 62 k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~L 135 (727)
.++|...++.+.+.-..+-.+.+.- ...+......+.+++.+...+.+|+..+.+-+.++.+++.|+..-
T Consensus 388 ~eqLr~elaql~a~r~q~eka~~~~----ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~ 457 (980)
T KOG0980|consen 388 QEQLRNELAQLLASRTQLEKAQVLV----EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESA 457 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555431 112244556777788888888889888888888888888776543
No 91
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.80 E-value=1.8e+02 Score=30.64 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 224 DTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWN 259 (727)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~ 259 (727)
.-|..+..+...|..+|....+.+..+-..|..|=+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~ 67 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888888777776665443
No 92
>PRK09039 hypothetical protein; Validated
Probab=62.77 E-value=2.5e+02 Score=31.22 Aligned_cols=132 Identities=10% Similarity=0.114 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 004858 98 GNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKS 177 (727)
Q Consensus 98 ~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~ 177 (727)
..++.++..+...|..++....+-..++..|..||..|-..|+.-.. .+ +-+.++..+.+.+++.|+.+.+
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~------~L---~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA------AL---DASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------HH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777777777777666777777777766666532110 01 1123444555555555555544
Q ss_pred HH----HHHHHHHHHHHHHH-HHHhCCChhhhcccc----cCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004858 178 DR----MKQVQDHLNTLNSF-CSVLGMDFKLTVSQI----HPSFGNSEGSRSISDDTIEQLTTAIQKLRE 238 (727)
Q Consensus 178 ~R----l~kv~el~~~I~~L-~~~Lg~d~~~~v~ev----~psl~e~~~~~~LS~~tL~~L~~~l~~Lee 238 (727)
.- ...+..++.++..= -..++....-.+... ...+.=+.++..|++.....|......|..
T Consensus 183 ~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~~~~~~vlF~~gsa~L~~~~~~~L~~ia~~l~~ 252 (343)
T PRK09039 183 VALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRFVFQSEVLFPTGSAELNPEGQAEIAKLAAALIE 252 (343)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEEEecCCceeCCCCcccCHHHHHHHHHHHHHHHH
Confidence 44 44566666666322 345554432221100 000111134667888777777766665533
No 93
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=62.63 E-value=3.7e+02 Score=33.12 Aligned_cols=166 Identities=14% Similarity=0.207 Sum_probs=98.0
Q ss_pred hhhhhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhh
Q 004858 10 QEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANR------CRAHLRQTIADYEAELAAICSAM 83 (727)
Q Consensus 10 ~~~~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~kVde~~~------~k~~L~qsIa~~~~EL~~L~~eL 83 (727)
+.-.|+.++|.+|+.+-.+.|.+|.+|. +.++|. |+.++=..+...+. .-.-|....+.++..|..|-..|
T Consensus 334 ~KVrt~KYLLgELkaLVaeq~DsE~qRL--itEvE~-cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqql 410 (861)
T PF15254_consen 334 EKVRTLKYLLGELKALVAEQEDSEVQRL--ITEVEA-CISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQL 410 (861)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHH-HHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4456889999999999999988887775 446664 87775554332221 12234445555555555554444
Q ss_pred CCCCCCC-----CCCcc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccc
Q 004858 84 AEPPVHN-----RQSDQ-------TAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTV 151 (727)
Q Consensus 84 Ge~p~~~-----~~~d~-------~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~ 151 (727)
.+..-.. .+.+- -..+|+.||+.....+|.|+.+-++-++.+...+.+=.+|...+....
T Consensus 411 reqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd-------- 482 (861)
T PF15254_consen 411 REQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKD-------- 482 (861)
T ss_pred HHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3321100 00000 113567777777778888888888877777777777777777553211
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 152 VDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTL 190 (727)
Q Consensus 152 vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I 190 (727)
. -..+.-..|..+...++.|.++-+.+|..++-.+
T Consensus 483 --~--~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kL 517 (861)
T PF15254_consen 483 --Q--ELLENKQQFDIETTRIKIEVEEALVNVKSLQFKL 517 (861)
T ss_pred --H--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 0 0123334555566666667776666666665554
No 94
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.41 E-value=75 Score=33.24 Aligned_cols=79 Identities=25% Similarity=0.332 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004858 160 RKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREV 239 (727)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~Leee 239 (727)
+.+++++..++++++||..-++...++...... -++.|..|.....+|+++
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee-----------------------------~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEE-----------------------------VQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHH
Confidence 566777777888888887776666665555322 136778888888899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 004858 240 KIQRMQKLQDLATTMLELWNLMDTPIEE 267 (727)
Q Consensus 240 K~~R~~kl~~L~~~L~eLW~~L~ip~EE 267 (727)
...+.-++.+|..+..+|-..+..|+++
T Consensus 186 ~~~l~~ev~~L~~r~~ELe~~~El~e~~ 213 (290)
T COG4026 186 LKKLPGEVYDLKKRWDELEPGVELPEEE 213 (290)
T ss_pred HHhchhHHHHHHHHHHHhcccccchHHH
Confidence 8888888889999988888888888776
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=61.39 E-value=2.3e+02 Score=30.17 Aligned_cols=108 Identities=16% Similarity=0.297 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 57 EANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIK 136 (727)
Q Consensus 57 e~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (727)
..+...+.+-.++..++.+|+.+..-+--.... .+..+=..++++|...+..++.+...-..++.++...+..|.
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k-----l~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIKRAEEK-----LSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555554433211000 011233445688888888888887777777777777777777
Q ss_pred HHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 137 NEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQD 185 (727)
Q Consensus 137 ~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~e 185 (727)
+++..- .+++..++..+..++...+..+..+.+
T Consensus 124 ~~i~~l----------------~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 124 KEIEDL----------------KERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766321 144555555555555555555544443
No 96
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=61.27 E-value=11 Score=30.13 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHH
Q 004858 361 EQIELQIAKAKEEA-FSRKDILEKID 385 (727)
Q Consensus 361 e~~E~EI~rLke~~-~srK~Ile~Ve 385 (727)
..||.||..+...| ..|+||++.|+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 45999999999998 68899999886
No 97
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=60.65 E-value=2.7e+02 Score=30.81 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhHhCCChhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Q 004858 15 SGSLIEQLQIIWDEVGETDTDK-----DKMLLELEQECLQVYRRKVDEANRCRAHLRQT------------IADYEAELA 77 (727)
Q Consensus 15 c~s~L~eLq~IWdEIG~~e~eR-----d~ml~elEqe~l~vyr~kVde~~~~k~~L~qs------------Ia~~~~EL~ 77 (727)
-.+.+.+|..+-.|+|.|...- ...+.. ...|+-++.-.+.|... ++|+.. =.....++.
T Consensus 60 ~~~f~~Els~~L~El~CPy~~L~~G~~~~rl~~-~~~~l~LL~fL~sELqa--arl~~~k~~~~~~~~~~~~s~~~~~l~ 136 (318)
T PF10239_consen 60 AESFLLELSGFLKELGCPYSALTSGDISDRLQS-KEDRLLLLEFLCSELQA--ARLLAKKKPEEPEQEEEKESEVAQELK 136 (318)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHcCCcchhhhcC-HHHHHHHHHHHHHHHHH--HHHHHhccCCccccccccccHHHHHHH
Confidence 3468899999999999997642 111111 11244444445544432 222111 234556889
Q ss_pred HHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCC
Q 004858 78 AICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGL 157 (727)
Q Consensus 78 ~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dL 157 (727)
.+|..||.+..+. ..+..+- |..+..+|..+...+. +.+.. .|-+ ...|
T Consensus 137 ~i~~~L~l~~p~~------~i~~~~l---------------------f~~i~~ki~~~L~~lp--~~~~~-~PLl-~~~L 185 (318)
T PF10239_consen 137 AICQALGLPKPPP------NITASQL---------------------FSKIEAKIEELLSKLP--PGHMG-KPLL-KKSL 185 (318)
T ss_pred HHHHHhCCCCCCC------CCCHHHH---------------------HHHHHHHHHHHHHhcC--ccccC-CCCc-CCCC
Confidence 9999999864321 1233333 4444444445555442 22111 1223 6789
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 158 SLRKLEEFHRELHELQKEKSDRMKQV 183 (727)
Q Consensus 158 S~e~LeeL~~~L~~Lq~EK~~Rl~kv 183 (727)
+.++.+.|...-+.|..||.-|.+-+
T Consensus 186 ~~~Qw~~Le~i~~~L~~EY~~RR~mL 211 (318)
T PF10239_consen 186 TDEQWEKLEKINQALSKEYECRRQML 211 (318)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997654
No 98
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.42 E-value=1.4e+02 Score=31.51 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHH---
Q 004858 297 DHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEE--- 373 (727)
Q Consensus 297 e~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~--- 373 (727)
..++.|++|+- |+ |..-.....++|++++-+..+.+. +-+=..+..||.+|+.+
T Consensus 4 RKLQ~Eid~~l-------Kk-v~EG~~~F~~i~~K~~~~~n~~QK---------------EK~E~DLKkEIKKLQR~RdQ 60 (233)
T PF04065_consen 4 RKLQQEIDRTL-------KK-VQEGVEEFDEIYEKVESATNQNQK---------------EKLEADLKKEIKKLQRLRDQ 60 (233)
T ss_pred hhHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHcccCcchH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 35677787763 22 244445678899999864433221 22222355555555544
Q ss_pred ----------------HHhhhHHHHHHHHHHHHhHHHHHHHHHcCChhhhhcCCCCchhchHHHHHHHHhhh-hhHHHHH
Q 004858 374 ----------------AFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNK-LPGMVET 436 (727)
Q Consensus 374 ----------------~~srK~Ile~Vekw~~l~eE~~~LE~~~kDpnR~~nrrGah~~LlrEEK~Rk~v~K-LPklee~ 436 (727)
...|+-|=..+++|. .|+.+.-.-.|++.. =++.-.+-..|++|.-+.. |-..++.
T Consensus 61 IK~W~~~~diKdk~~L~e~Rk~IE~~MErFK-~vEkesKtKafSkeG------L~~~~k~dp~e~ek~e~~~wl~~~Id~ 133 (233)
T PF04065_consen 61 IKTWLSSNDIKDKKKLLENRKLIEEQMERFK-VVEKESKTKAFSKEG------LMAASKLDPKEKEKEEARDWLKDSIDE 133 (233)
T ss_pred HHHHccCcccccHHHHHHHHHHHHHHHHHHH-HHHHHhcccccchhh------hhcccccCcchHHHHHHHHHHHHHHHH
Confidence 233444444444442 233333333333321 1122234567888886665 9999999
Q ss_pred HHHHHHHHHHH
Q 004858 437 LASKTIAWETE 447 (727)
Q Consensus 437 L~~~l~~WE~e 447 (727)
|...+..||.+
T Consensus 134 L~~QiE~~E~E 144 (233)
T PF04065_consen 134 LNRQIEQLEAE 144 (233)
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 99
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.54 E-value=4.8e+02 Score=33.37 Aligned_cols=245 Identities=19% Similarity=0.250 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 54 KVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQ 133 (727)
Q Consensus 54 kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~ 133 (727)
.|++....|.+|+..|.++.. -.. ++.. + +.....|...++.....++.++. .+.....+++
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~-~~~---e~~~--v-----~~~i~~le~~~~~~~~~~~~~k~-------~l~~~~~El~ 714 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK-RRK---EVSS--V-----ESKIHGLEMRLKYSKLDLEQLKR-------SLEQNELELQ 714 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhh---hHHH--H-----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 356666678888888777665 111 1110 1 12233566667777777776653 3444555566
Q ss_pred HHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCC
Q 004858 134 MIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFG 213 (727)
Q Consensus 134 ~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~ 213 (727)
.+-++|.. +.+ .+ ++ -.+.|+....+..+|++. +.+|.+-+- ..+|..+|+. -... .
T Consensus 715 ~~~~~i~~---~~p---~i--~~-i~r~l~~~e~~~~~L~~~----~n~ved~if--~~f~~~igv~-ir~Y-------e 771 (1141)
T KOG0018|consen 715 RTESEIDE---FGP---EI--SE-IKRKLQNREGEMKELEER----MNKVEDRIF--KGFCRRIGVR-IREY-------E 771 (1141)
T ss_pred HHHHHHHh---hCc---hH--HH-HHHHHHHHHHHHHHHHHH----HHHHHHHHH--HHhhhhcCee-eehH-------H
Confidence 66655531 111 00 00 013444444444444332 223322222 2567777765 1111 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcH
Q 004858 214 NSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSV 293 (727)
Q Consensus 214 e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~ 293 (727)
+ .. + ..+.-++..++-.++..|=+.|++-.+ +.-...+.- -.
T Consensus 772 e-----------------~~--~---~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~--------------~~ 813 (1141)
T KOG0018|consen 772 E-----------------RE--L---QQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVER--------------WE 813 (1141)
T ss_pred H-----------------HH--H---HHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHH--------------HH
Confidence 1 00 0 222333344555566666666666432 111111000 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHH
Q 004858 294 DFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEE 373 (727)
Q Consensus 294 d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~ 373 (727)
..++.++.|++-|+.-....++.+ ... ++++. . +.+.|...-..+. .....+..+-.++.+|...
T Consensus 814 ~~v~~~~~~~~~~~~~e~~~~k~i-~e~-~~~e~--k-------~k~~~~~~~~e~~----e~~k~~~~~~~~~tkl~~~ 878 (1141)
T KOG0018|consen 814 RSVEDLEKEIEGLKKDEEAAEKII-AEI-EELEK--K-------NKSKFEKKEDEIN----EVKKILRRLVKELTKLDKE 878 (1141)
T ss_pred HHHHHHHHhHHhhHHHHHHHHHHH-hhH-HHHHH--H-------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhh
Confidence 456666666666666554444443 333 45554 1 1334433221111 2345566666667776666
Q ss_pred HHhh-hHHHHHHHHHHHHhH
Q 004858 374 AFSR-KDILEKIDKWLAACE 392 (727)
Q Consensus 374 ~~sr-K~Ile~Vekw~~l~e 392 (727)
..+- -.|=.+...|.++..
T Consensus 879 i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 879 ITSIESKIERKESERHNLLS 898 (1141)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 5444 344445556665543
No 100
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=58.48 E-value=2.5e+02 Score=29.81 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 104 LRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQV 183 (727)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv 183 (727)
+..++..++.++.+.++--++...+...|+.+...+... .. .. +..-+.++++.|...++.++.....-..++
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~-e~-----kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA-EE-----KL-SAVKDERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HH-hccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444211 00 01 233456788888888888877777777777
Q ss_pred HHHHHHHHHHHHHhC
Q 004858 184 QDHLNTLNSFCSVLG 198 (727)
Q Consensus 184 ~el~~~I~~L~~~Lg 198 (727)
.++...+..|-..+.
T Consensus 113 ~~l~~~~~~l~~~i~ 127 (239)
T COG1579 113 AELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666666655443
No 101
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.37 E-value=1.8e+02 Score=30.18 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 161 KLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCS 195 (727)
Q Consensus 161 ~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~ 195 (727)
+.+.|+.+++.++++...=..+...+...+..=|-
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf 174 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444444444444343
No 102
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=58.23 E-value=3.4e+02 Score=31.21 Aligned_cols=169 Identities=16% Similarity=0.209 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 004858 159 LRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVL---GMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQK 235 (727)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~L---g~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~ 235 (727)
...|..|+..|.-|+.-++.-...+...+..|..=...+ +.+.. . +.+-..+..-..+
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~----------------~---~s~R~y~e~~k~k 214 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSAS----------------G---SSNRAYVESSKKK 214 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----------------C---CcchHHHHHhHHH
Confidence 478888888888888888888777666655554433322 11111 1 1222222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 004858 236 LREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMK 315 (727)
Q Consensus 236 LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mk 315 (727)
|..+-..-+.++.+|.+-|..| |.... ..|+.| +..-++.+..++..+..-= +.|.
T Consensus 215 L~~~Sd~lltkVDDLQD~vE~L----------RkDV~--~RgVRp-----------~~~qLe~v~kdi~~a~keL-~~m~ 270 (426)
T smart00806 215 LSEDSDSLLTKVDDLQDIIEAL----------RKDVA--QRGVRP-----------SKKQLETVQKELETARKEL-KKME 270 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHH--HcCCCC-----------CHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3333344444444444444333 22332 345554 3466777777777766543 2488
Q ss_pred HHHHHHHHHHHHHHHhc-CCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 004858 316 ELVLKKQSELEEICRKN-HMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWL 388 (727)
Q Consensus 316 elI~k~R~ELeeLWdk~-~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile~Vekw~ 388 (727)
++|...+--|..+|..= ....++ -+.|...|.-+..|++-+..-.+.|.+|+.+-
T Consensus 271 ~~i~~eKP~WkKiWE~EL~~VcEE------------------qqfL~lQedL~~DL~dDL~ka~eTf~lVeq~~ 326 (426)
T smart00806 271 EYIDIEKPIWKKIWEAELDKVCEE------------------QQFLTLQEDLIADLKEDLEKAEETFDLVEQCC 326 (426)
T ss_pred HHHhhcChHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888742 222222 34567788888899999999999999999883
No 103
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.08 E-value=1.3e+02 Score=36.65 Aligned_cols=116 Identities=17% Similarity=0.251 Sum_probs=71.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-CC-CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 52 RRKVDEAN-RCRAHLRQTIADYEAELAAICSAM-AE-PPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQV 128 (727)
Q Consensus 52 r~kVde~~-~~k~~L~qsIa~~~~EL~~L~~eL-Ge-~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l 128 (727)
..-||... ..|.+|.+.|..-.++|..+-.++ |. ..+... -.-....+.-+|+.+-..+..|....++++-+|..
T Consensus 767 ~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~-~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~a- 844 (1104)
T COG4913 767 DDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKE-DTAALSEVGAELDDIPEYLARLQTLTEDALPEFLA- 844 (1104)
T ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc-chhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHH-
Confidence 33455555 578888888888888888877765 22 111100 00112234445677777777777777777666643
Q ss_pred HHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 129 LEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNT 189 (727)
Q Consensus 129 ~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~ 189 (727)
..+.|..+. |...+..|-.+|..-..+.++|++-+++-...
T Consensus 845 --rF~~llN~~------------------S~~~v~q~~~~L~~er~~IeERIe~IN~SL~~ 885 (1104)
T COG4913 845 --RFQELLNRS------------------SDDGVTQLLSHLDHERALIEERIEAINDSLRR 885 (1104)
T ss_pred --HHHHHhhhc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333322 33567788888988888899998777655443
No 104
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=58.03 E-value=1.4e+02 Score=31.33 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 98 GNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 98 ~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
..+++.+..++..++++.++|.+-++++..++.+......+|
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888899999999888887777777666655544
No 105
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.94 E-value=2.9e+02 Score=30.39 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 221 ISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLEL 257 (727)
Q Consensus 221 LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eL 257 (727)
.+.++=..|...+..|++.+..-+..+.+....+..|
T Consensus 266 ~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 266 ASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677788888888888888777777777766655
No 106
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=57.08 E-value=6.6e+02 Score=34.20 Aligned_cols=268 Identities=18% Similarity=0.240 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCCCCCC-
Q 004858 16 GSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMA-EPPVHNRQS- 93 (727)
Q Consensus 16 ~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG-e~p~~~~~~- 93 (727)
..+|.-++.+=+.+--.+..-+.++....++-++-...+|++..+......+.|..+..+..-+..-+- ..+.+...+
T Consensus 542 ~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~n 621 (1822)
T KOG4674|consen 542 VELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPN 621 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 345555566666666555556778877777777777888888888777777778777777776632221 111110011
Q ss_pred ----cccc--CCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHH
Q 004858 94 ----DQTA--GNLKEELRNILPQLEEMRKRKSDRK----EQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLE 163 (727)
Q Consensus 94 ----d~~~--~~LkeqL~~i~~~LEeLrk~K~eR~----~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~Le 163 (727)
+... +.+...|..+...++.++.++.+++ ++|..++.++..|...++-.. ....++.++++
T Consensus 622 ss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~---------~~~~fA~ekle 692 (1822)
T KOG4674|consen 622 SSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLK---------NELNLAKEKLE 692 (1822)
T ss_pred chhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHH
Confidence 1111 1235556777777887777777653 456777777777777774211 13567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004858 164 EFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQR 243 (727)
Q Consensus 164 eL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R 243 (727)
.|+..+..++.+...-.+....+.+.|+.-=.....--. + ...++..+..|...+..|..++.-+
T Consensus 693 ~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~----e-----------L~~a~~k~~~le~ev~~LKqE~~ll 757 (1822)
T KOG4674|consen 693 NLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQ----E-----------LLSANEKLEKLEAELSNLKQEKLLL 757 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----------HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988884444444444444331111111000 0 1125678899999999999888887
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004858 244 MQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQS 323 (727)
Q Consensus 244 ~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ 323 (727)
...-..|......|..... ... +....+.....+.++.+.-.+.++..=|..+..
T Consensus 758 ~~t~~rL~~e~~~l~~e~~-------~L~------------------~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~ 812 (1822)
T KOG4674|consen 758 KETEERLSQELEKLSAEQE-------SLQ------------------LLLDNLQTQKNELEESEMATKDKCESRIKELER 812 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666654211 111 112455555666666666666666665666666
Q ss_pred HHHHHHHhc
Q 004858 324 ELEEICRKN 332 (727)
Q Consensus 324 ELeeLWdk~ 332 (727)
+|..+=..+
T Consensus 813 el~~lk~kl 821 (1822)
T KOG4674|consen 813 ELQKLKKKL 821 (1822)
T ss_pred HHHHHHHHH
Confidence 666665553
No 107
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=57.05 E-value=1.6e+02 Score=30.10 Aligned_cols=38 Identities=13% Similarity=0.341 Sum_probs=24.9
Q ss_pred HcCChhhhhcCCCCchhchHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 004858 400 YNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWET 446 (727)
Q Consensus 400 ~~kDpnR~~nrrGah~~LlrEEK~Rk~v~KLPklee~L~~~l~~WE~ 446 (727)
|...|.+|+. |++-.-+...|+|.+..++-+++..=|+
T Consensus 123 ~~~e~~k~~~---------Re~~iak~m~K~pq~~a~~~a~~~k~e~ 160 (225)
T KOG4848|consen 123 YTKEPEKFTF---------REAEIAKNMKKYPQTLAKYEASLVKQEQ 160 (225)
T ss_pred HHhhHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHhHH
Confidence 4455666652 5555666777888888888877764333
No 108
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.05 E-value=3.7e+02 Score=31.00 Aligned_cols=140 Identities=10% Similarity=0.130 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 109 PQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLN 188 (727)
Q Consensus 109 ~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~ 188 (727)
.++..+..+...-..++..++.++..|-..+.+.+......... ....-..+|.+++.++..+...+....-.|..+..
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~-~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~ 282 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSV-ANSELDGRIEALEKQLDALRLRYTDKHPDVIATKR 282 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCccccc-CCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 33444444444444445667777777777675543322110011 11223578999999999999999999999999999
Q ss_pred HHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 189 TLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLEL 257 (727)
Q Consensus 189 ~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eL 257 (727)
+|..+-..+.-....... ........+..+..|...+..++........++..+...+.++
T Consensus 283 qi~~l~~~l~~~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 283 EIAQLEEQKEEEGSAKNG--------GPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERL 343 (498)
T ss_pred HHHHHHHHHHhhcccccc--------CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888776432211100 0011122334455566666666555555555555555555554
No 109
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=55.86 E-value=4.2e+02 Score=31.54 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=6.7
Q ss_pred CCchHHHhHHH
Q 004858 455 DGVRLHSMLDE 465 (727)
Q Consensus 455 dG~~lLe~lee 465 (727)
..+-|++||++
T Consensus 439 EkQeL~~yi~~ 449 (546)
T PF07888_consen 439 EKQELLEYIER 449 (546)
T ss_pred HHHHHHHHHHH
Confidence 34567777743
No 110
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=55.80 E-value=43 Score=40.90 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 157 LSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSF 193 (727)
Q Consensus 157 LS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L 193 (727)
.+.+++..|+..+..|+.+...=..++..+...|..+
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468889999999999988877777776666666543
No 111
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.88 E-value=1.9e+02 Score=28.45 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 157 LSLRKLEEFHRELHELQKEKSDRMKQV 183 (727)
Q Consensus 157 LS~e~LeeL~~~L~~Lq~EK~~Rl~kv 183 (727)
.|.+.++.+......+.++...|..-|
T Consensus 142 vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999998887644
No 112
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.82 E-value=2.8e+02 Score=33.52 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCCHHH
Q 004858 222 SDDTIEQLTTAIQKLREVKIQRMQKLQDLAT------TMLELWNLMDTPIEE 267 (727)
Q Consensus 222 S~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~------~L~eLW~~L~ip~EE 267 (727)
+.+-|..+-.+...+++.+.+++.++..... .+..+|+.+....+.
T Consensus 7 ~~~~l~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~ 58 (611)
T KOG2398|consen 7 STKELADFVRERASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEA 58 (611)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHH
Confidence 4566777888888899999999988864333 788999988886655
No 113
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=53.62 E-value=86 Score=27.03 Aligned_cols=64 Identities=30% Similarity=0.306 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 12 ETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECL-QVYRRKVDEANRCRAHLRQTIADYEAELA 77 (727)
Q Consensus 12 ~~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l-~vyr~kVde~~~~k~~L~qsIa~~~~EL~ 77 (727)
-+++-++|.-||.=||.|-.+-..-.+.+.+..+|.- .+|+. |.+...-+++++.-.+++..++
T Consensus 3 ~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~--DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 3 ATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQH--DAACRVIARLLKERDEAREALA 67 (70)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHhHHHHHHHHH
Confidence 4788999999999999999888887667777766654 34432 3333344455555555544444
No 114
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.32 E-value=4.6e+02 Score=31.22 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004858 293 VDFIDHVEAEVTRLEELK 310 (727)
Q Consensus 293 ~d~Ie~le~EV~RLeeLK 310 (727)
.+-|..+..|++++++--
T Consensus 370 k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHL 387 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778888887776644
No 115
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.84 E-value=5e+02 Score=30.90 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 108 LPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHL 187 (727)
Q Consensus 108 ~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~ 187 (727)
+..++++...-++|..+..+-++-+.+-|..|...+.-.-......+.|.+.+ +..+-.+++.|+.-.+.-..+|...+
T Consensus 611 r~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~E-lq~~~~~~~~L~~~iET~~~~~~KQ~ 689 (741)
T KOG4460|consen 611 RKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKE-LQLIPDQLRHLGNAIETVTMKKDKQQ 689 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888888888888888888544321000001112222211 12222222222222222222222211
Q ss_pred HHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 188 NTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATT 253 (727)
Q Consensus 188 ~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~ 253 (727)
.-+-.....|. -....+++.....++..+.+|-.+-....+++..+...
T Consensus 690 ~H~~~v~~al~-----------------K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~ 738 (741)
T KOG4460|consen 690 QHMEKVLSALP-----------------KPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRNH 738 (741)
T ss_pred HHHHHHHhhcc-----------------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111110 01345677888889999999988888888887766543
No 116
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.67 E-value=2.2e+02 Score=27.07 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 004858 163 EEFHRELHEL 172 (727)
Q Consensus 163 eeL~~~L~~L 172 (727)
++|+.-+.++
T Consensus 99 eEL~~Dv~Dl 108 (120)
T PF12325_consen 99 EELRADVQDL 108 (120)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 117
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.39 E-value=6.9e+02 Score=32.43 Aligned_cols=110 Identities=17% Similarity=0.266 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004858 163 EEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQ 242 (727)
Q Consensus 163 eeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~ 242 (727)
+.++.+...+..+..++.++.......|......+. .....++...+.|+....+
T Consensus 348 e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~k-------------------------n~~~~~k~~~~~~e~~~vk 402 (1293)
T KOG0996|consen 348 EGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELK-------------------------NKFESLKKKFQDLEREDVK 402 (1293)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHH
Confidence 355666666666777777777777777666544433 2344556666667666677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHH
Q 004858 243 RMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKS 311 (727)
Q Consensus 243 R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~ 311 (727)
+.+.+..+...+..|-..+.-...++..+.....+ +...|..++.|+..|+++..
T Consensus 403 ~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~--------------~~~~i~~~~~ei~~L~~~~~ 457 (1293)
T KOG0996|consen 403 REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEK--------------ARIEIQKCQTEIEQLEELLE 457 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchh--------------hHhHHHHHHHHHHHHHHHHH
Confidence 77777777777766666655544444444332111 34678888888888888774
No 118
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.38 E-value=5.3e+02 Score=30.81 Aligned_cols=199 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 102 EELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMK 181 (727)
Q Consensus 102 eqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~ 181 (727)
+.+..++..|+.++....++.++..-++-|++.|-. -.+..+.. +.|..-+..|..
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~---~~l~~gE~-----------e~L~~e~~rLsn---------- 219 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQFQLEELEE---LNLQPGED-----------EELEEERKRLSN---------- 219 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCchH-----------HHHHHHHHHHhh----------
Q ss_pred HHHHHHHHHHHHHHHh--CCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 182 QVQDHLNTLNSFCSVL--GMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWN 259 (727)
Q Consensus 182 kv~el~~~I~~L~~~L--g~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~ 259 (727)
...+...+.+.+..| .-+.......+...+.. ...+......+..+.+....-.-.+.+...+|..+-+
T Consensus 220 -~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~--------l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~ 290 (557)
T COG0497 220 -SEKLAEAIQNALELLSGEDDTVSALSLLGRALEA--------LEDLSEYDGKLSELAELLEEALYELEEASEELRAYLD 290 (557)
T ss_pred -HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH--------HHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHhcC
Q 004858 260 LMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSK------MKELVLKKQSELEEICRKNH 333 (727)
Q Consensus 260 ~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~------mkelI~k~R~ELeeLWdk~~ 333 (727)
.+++++ .-++..+.-+..|..++++. +..+..+...+|..|
T Consensus 291 ~le~Dp----------------------------~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L----- 337 (557)
T COG0497 291 ELEFDP----------------------------NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL----- 337 (557)
T ss_pred cCCCCH----------------------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-----
Q ss_pred CCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004858 334 MVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDK 386 (727)
Q Consensus 334 ~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile~Vek 386 (727)
.+.++-++.++.++..++..|..-...|...-+
T Consensus 338 --------------------~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 338 --------------------DNSEESLEALEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred --------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 119
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=49.04 E-value=14 Score=36.42 Aligned_cols=25 Identities=12% Similarity=0.103 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCCcchhhhhh
Q 004858 319 LKKQSELEEICRKNHMVPENDSSME 343 (727)
Q Consensus 319 ~k~R~ELeeLWdk~~~s~eeR~af~ 343 (727)
++.|.+|-+||+.|++|.-.|..|-
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyFf 27 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYFF 27 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhh
Confidence 6778999999999999999999873
No 120
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.48 E-value=34 Score=34.74 Aligned_cols=83 Identities=20% Similarity=0.378 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSD 178 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~ 178 (727)
.+...+..++..|.++.+.+.+-..++..+..+++.+-..+.. -...|..|...+..|+.+...
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~----------------~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSE----------------KERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778888888887766666666666666554421 126788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004858 179 RMKQVQDHLNTLNSFCSVL 197 (727)
Q Consensus 179 Rl~kv~el~~~I~~L~~~L 197 (727)
+...+.+....+..+-.++
T Consensus 135 l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888877777766554443
No 121
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.40 E-value=4.1e+02 Score=30.57 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q 004858 100 LKEELRNILPQLEEMRKRK---SDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K---~eR~~ef~~l~~qI~~Lc~eL 139 (727)
+.++|.+++-++-..++.+ .+++..|..=+..++.|..+|
T Consensus 337 ~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieel 379 (502)
T KOG0982|consen 337 SSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEEL 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444555555554333332 233333444344444444433
No 122
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.61 E-value=3.2e+02 Score=27.78 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004858 122 KEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 122 ~~ef~~l~~qI~~Lc~eL 139 (727)
..++..++.+.+.|-+.|
T Consensus 169 ~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 169 QEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555554
No 123
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=47.42 E-value=4.6e+02 Score=29.54 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004858 178 DRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLR 237 (727)
Q Consensus 178 ~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~Le 237 (727)
.-+.++.++-..|..|=..||++... .+.++.+..+.+|. .+|+.|...+.-|.
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~-----~~~l~~~~~~~~l~-~~l~~L~~~lslL~ 259 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDK-----MSSLDSDTSSSPLL-PALNELERQLSLLD 259 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccc-----cccccccCCcchHH-HHHHHHHHHHHhcC
Confidence 34567888888888899999995431 22343322233332 45666666666664
No 124
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=45.20 E-value=3.2e+02 Score=27.11 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 108 LPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHL 187 (727)
Q Consensus 108 ~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~ 187 (727)
+..++.+|-.......++..+..++...-. |+ .+|..-..+.|+.....|.+..++|-.++..++
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~-lg--------------e~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk 69 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEE-LG--------------EGLHLIDFEQLKIENQQLNEKIEERNKELLKLK 69 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--------------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655543 42 245667788999999999999999999999999
Q ss_pred HHHHHHHHH
Q 004858 188 NTLNSFCSV 196 (727)
Q Consensus 188 ~~I~~L~~~ 196 (727)
..+..-...
T Consensus 70 ~~~~~~v~~ 78 (177)
T PF13870_consen 70 KKIGKTVQI 78 (177)
T ss_pred HHHHHHHHH
Confidence 886554433
No 125
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=44.94 E-value=2e+02 Score=27.76 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhh
Q 004858 218 SRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVT 275 (727)
Q Consensus 218 ~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~ 275 (727)
-.+|+.+.|+.+-..+..|+.......++ +.++.+.++...||+..|....
T Consensus 75 vVgl~~~~i~~i~~~~~tLe~Llemsd~e-------l~~~l~~~g~~~EE~rRL~~Al 125 (129)
T PF13543_consen 75 VVGLRPESIQAILSKVLTLEALLEMSDEE-------LKEILNRCGAREEECRRLCRAL 125 (129)
T ss_pred hcCCCHHHHHHHHHhhcCHHHHHhCCHHH-------HHHHHHHhCCCHHHHHHHHHHH
Confidence 46899999999966666776555544444 4445555788888888876643
No 126
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.32 E-value=1.8e+02 Score=33.17 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhh
Q 004858 224 DTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVT 275 (727)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~ 275 (727)
.||+.|+...-+|+.--.+ +--.-+..||.+|+-=+.|.+..+..+
T Consensus 179 ~~leQLRre~V~lentlEQ------EqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 179 NTLEQLRREAVQLENTLEQ------EQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred hhHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555554444332222 222334678888887666665555544
No 127
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=43.69 E-value=5.6e+02 Score=29.49 Aligned_cols=94 Identities=13% Similarity=0.293 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 102 EELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMK 181 (727)
Q Consensus 102 eqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~ 181 (727)
++|+.++..++.+.++-.+=.+++..|..+|..+-.+|.....-.. -..++..=...+|..+...|..|+.++.+|..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~--~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~ 115 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI--ETADDLKKLRKQIADLNARLNALEVQEREQRR 115 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444455555555555444421110000 00111122347788888889999888866666
Q ss_pred HHHHHHHHHHHHHHHhCCCh
Q 004858 182 QVQDHLNTLNSFCSVLGMDF 201 (727)
Q Consensus 182 kv~el~~~I~~L~~~Lg~d~ 201 (727)
.+..+... ...+|.++
T Consensus 116 ~La~~L~A----~~r~g~~p 131 (420)
T COG4942 116 RLAEQLAA----LQRSGRNP 131 (420)
T ss_pred HHHHHHHH----HHhccCCC
Confidence 66555554 34455544
No 128
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=43.34 E-value=7.9 Score=48.16 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLE 130 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~ 130 (727)
++.++++....+..+......+..++..|...|................|..+|..++..|++-.+.+..-..++..+..
T Consensus 192 l~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~ 271 (859)
T PF01576_consen 192 LQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEH 271 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHH
Confidence 55566666666666777777777777777766655433222222334456666777777777766666666666666666
Q ss_pred HHHHHHHHhc
Q 004858 131 QIQMIKNEIY 140 (727)
Q Consensus 131 qI~~Lc~eL~ 140 (727)
++..|-..+.
T Consensus 272 e~~~L~eqle 281 (859)
T PF01576_consen 272 ELEQLREQLE 281 (859)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 6666665553
No 129
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=43.20 E-value=2.2e+02 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.435 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 102 EELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMI 135 (727)
Q Consensus 102 eqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~L 135 (727)
-++..++..+..+...++.-.+++..+..+...+
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555566666666666555555555544444
No 130
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=42.85 E-value=7.7e+02 Score=30.79 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHH
Q 004858 294 DFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEE 373 (727)
Q Consensus 294 d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~ 373 (727)
+...+|+.--.+|...+.++ ..+|..++.+|.++-. .|.+ ..-|.+.--..++.+..+++..
T Consensus 270 E~m~qlk~kns~L~~ElSqk-eelVk~~qeeLd~lkq-------t~t~----------a~gdseqatkylh~enmkltrq 331 (1265)
T KOG0976|consen 270 EKMRQLKAKNSVLGDELSQK-EELVKELQEELDTLKQ-------TRTR----------ADGDSEQATKYLHLENMKLTRQ 331 (1265)
T ss_pred HHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHH-------HHHH----------hhccHHHHHHHHHHHHHHHHHH
Confidence 44445555555666665553 4556666666666521 1111 1123455555666666666655
Q ss_pred H-HhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004858 374 A-FSRKDILEKIDKWLAACEEESWLEDY 400 (727)
Q Consensus 374 ~-~srK~Ile~Vekw~~l~eE~~~LE~~ 400 (727)
. ..|.++++.--+-+.+-+....||..
T Consensus 332 kadirc~LlEarrk~egfddk~~eLEKk 359 (1265)
T KOG0976|consen 332 KADIRCALLEARRKAEGFDDKLNELEKK 359 (1265)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 3 56777777776666666666777654
No 131
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=42.69 E-value=4.4e+02 Score=27.90 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHhcC
Q 004858 297 DHVEAEVTRLEELKSSKMKELVL-------KKQSELEEICRKNH 333 (727)
Q Consensus 297 e~le~EV~RLeeLK~~~mkelI~-------k~R~ELeeLWdk~~ 333 (727)
+.+..||.|.+.-|..=|+..|. ..+.++.++|...+
T Consensus 187 ~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~fl 230 (234)
T cd07665 187 ATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888777666553 35668899998765
No 132
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.51 E-value=6.9e+02 Score=30.16 Aligned_cols=34 Identities=12% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 106 NILPQLE-EMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 106 ~i~~~LE-eLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
+++..+| .+-+.-.+=+++|+.++.+++++|+.+
T Consensus 53 nLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v 87 (655)
T KOG3758|consen 53 NLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDV 87 (655)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554 333444455666777777776666655
No 133
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.19 E-value=4.3e+02 Score=31.76 Aligned_cols=93 Identities=16% Similarity=0.290 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 004858 98 GNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKS 177 (727)
Q Consensus 98 ~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~ 177 (727)
+.....+..+...++.|..+-.+....+.+++..|..|-++|..-. . .+.....-..++..+...+..|+.+..
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~---r---~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR---R---EVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4566678888888888888888877788888888888888775321 1 111223334778888899999998888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004858 178 DRMKQVQDHLNTLNSFCSV 196 (727)
Q Consensus 178 ~Rl~kv~el~~~I~~L~~~ 196 (727)
+-...+..|...+..+-..
T Consensus 492 e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 492 EKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888877766643
No 134
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.13 E-value=2.9e+02 Score=26.32 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004858 100 LKEELRNILPQLEEMRKRKSDR 121 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR 121 (727)
|..++..|+..++.|......-
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l 32 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEEL 32 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 135
>PF12064 DUF3544: Domain of unknown function (DUF3544); InterPro: IPR021931 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 198 to 216 amino acids in length. This domain is found associated with PF00628 from PFAM, PF01753 from PFAM, PF00439 from PFAM, PF00855 from PFAM.
Probab=40.74 E-value=82 Score=31.53 Aligned_cols=38 Identities=29% Similarity=0.521 Sum_probs=27.7
Q ss_pred ccCCCCCCCCCCCCccCCCCCCc-ccCCCCcCCCCCccCCCC
Q 004858 576 ESAGRRGLDIPGEPKKKQSSDAS-EQDSPMKRRPFSAINSTT 616 (727)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 616 (727)
.|+|--..|..+-|+.-..--|+ ...|| |||+|-.++.
T Consensus 49 ~StgEESMD~TASPas~k~g~ags~~~SP---K~f~p~~~~~ 87 (207)
T PF12064_consen 49 YSTGEESMDCTASPASTKTGPAGSSSGSP---KPFNPQASTV 87 (207)
T ss_pred cccccccccccCCCCCCCcCCCCccCCCC---CCCCCCCCCC
Confidence 45667777777777765555555 68899 9999988774
No 136
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=40.47 E-value=4.6e+02 Score=27.53 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 236 LREVKIQRMQKLQDLATTMLELWN 259 (727)
Q Consensus 236 LeeeK~~R~~kl~~L~~~L~eLW~ 259 (727)
+..+|..|...+.++...|..+-+
T Consensus 166 i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 166 IEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666665555554
No 137
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=40.01 E-value=6.3e+02 Score=29.02 Aligned_cols=12 Identities=0% Similarity=0.232 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 004858 363 IELQIAKAKEEA 374 (727)
Q Consensus 363 ~E~EI~rLke~~ 374 (727)
+..||.||+.+.
T Consensus 258 l~~EveRlrt~l 269 (552)
T KOG2129|consen 258 LQAEVERLRTYL 269 (552)
T ss_pred HHHHHHHHHHHH
Confidence 355566665554
No 138
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.46 E-value=1.4e+02 Score=23.51 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 42 ELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 42 elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
|+|..| ++++.-.+.....-+.|.+.-+.+.+++..|-..|+
T Consensus 2 QlE~Dy-~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDY-DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467766 677777777777778888888888888888877665
No 139
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=38.75 E-value=4.8e+02 Score=27.30 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=28.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004858 154 ETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLG 198 (727)
Q Consensus 154 ~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg 198 (727)
..++|...|+.|+..|..+ +.|+.+..-+..++..--..++
T Consensus 123 ~~nFT~~ELeSlkeEL~Hf----E~rl~K~~H~~~el~~~~~k~~ 163 (214)
T PF06401_consen 123 NANFTEDELESLKEELKHF----EKRLEKHRHYQEELELSHEKLK 163 (214)
T ss_dssp TTT--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999874 5677777777777554444443
No 140
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=38.46 E-value=9.8e+02 Score=30.80 Aligned_cols=88 Identities=13% Similarity=0.272 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 104 LRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVD-ETGLSLRKLEEFHRELHELQKEKSDRMKQ 182 (727)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd-~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~k 182 (727)
+..+..++++++... +-+++..++.+.++.|-++++=.--+ +++ +..--.+.+...+..+..|+++.+.+..+
T Consensus 237 i~~l~k~i~e~~e~~-~~~~~~e~~~~~l~~Lk~k~~W~~V~-----~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k 310 (1074)
T KOG0250|consen 237 IKNLKKKIKEEEEKL-DNLEQLEDLKENLEQLKAKMAWAWVN-----EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGK 310 (1074)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433222 22455666666666666666311000 110 11112244455566666666666666666
Q ss_pred HHHHHHHHHHHHHHh
Q 004858 183 VQDHLNTLNSFCSVL 197 (727)
Q Consensus 183 v~el~~~I~~L~~~L 197 (727)
+.++...+...-..+
T Consensus 311 ~~~~r~k~teiea~i 325 (1074)
T KOG0250|consen 311 IEEARQKLTEIEAKI 325 (1074)
T ss_pred HHHHhhhhhHHHHHH
Confidence 666665544444443
No 141
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.22 E-value=8.6e+02 Score=30.04 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 156 GLSLRKLEEFHRELHELQKEKSDRMKQVQ 184 (727)
Q Consensus 156 dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~ 184 (727)
..+.+.++-|....+.|.+++-.|+..+.
T Consensus 532 p~~~E~l~lL~~a~~vlreeYi~~~~~ar 560 (717)
T PF10168_consen 532 PSPQECLELLSQATKVLREEYIEKQDLAR 560 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999888777643
No 142
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.52 E-value=1.9e+02 Score=31.34 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=37.8
Q ss_pred CccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 93 SDQTAGNLKEE---LRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNE 138 (727)
Q Consensus 93 ~d~~~~~Lkeq---L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~e 138 (727)
+++-+++|++. +..++.+|.+-..+-.+|-.++.+|+.|+.++-+.
T Consensus 56 PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 56 PEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 56778999987 67788888888888888888999999988877763
No 143
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=37.11 E-value=5.5e+02 Score=28.19 Aligned_cols=34 Identities=12% Similarity=0.318 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
||-.|+|.+.++..+.+.+......|..|-+++-
T Consensus 225 WR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit 258 (384)
T KOG0972|consen 225 WRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT 258 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 6667777777777777777766666666655553
No 144
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.94 E-value=7.8e+02 Score=29.17 Aligned_cols=36 Identities=3% Similarity=0.205 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 221 ISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLE 256 (727)
Q Consensus 221 LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~e 256 (727)
+.+..|+.++..+..++..+...-..+.++...+..
T Consensus 298 ~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 298 FDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445677778777777777666554444444444433
No 145
>cd03489 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit re-ligation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanosomatid parasite topo I differ from human
Probab=36.49 E-value=51 Score=34.13 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004858 468 ILRQEKEQERRRQRDQKKLKEQLIAEQEALYGSK 501 (727)
Q Consensus 468 ~~r~eKE~ek~r~R~~kK~q~q~~~e~e~~~Gs~ 501 (727)
.+..++|+.|.+-++.||...+.+.+.|..||-.
T Consensus 90 ~~~~~~e~kK~~tkeEKk~~K~ek~~~e~~Y~~~ 123 (212)
T cd03489 90 WHLREKEKKKSRTKEEKKALKEEKDKEAEPYMWC 123 (212)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhccCCEE
Confidence 3566666666666777776655566678888854
No 146
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=36.39 E-value=6.3e+02 Score=27.94 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHHhHhCCChhHHH----HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 004858 13 TTSGSLIEQLQIIWDEVGETDTDKD----KMLLELEQECLQV--------YRRKVDEANRCRAHLRQTIADYEAEL---- 76 (727)
Q Consensus 13 ~~c~s~L~eLq~IWdEIG~~e~eRd----~ml~elEqe~l~v--------yr~kVde~~~~k~~L~qsIa~~~~EL---- 76 (727)
..+..+=..|..+-++++.|..--. ..=..|-++|-+| +.+.+++....+.+....|.++...|
T Consensus 24 ~~l~~~~~~l~~~L~slnLP~sl~~l~~~~lP~sl~~~~~~i~~~gg~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~ 103 (339)
T cd09235 24 GKLREATQLLNGVLASLNLPAAIEDVSGDTVPQSLLEKSRTVIEKGGIQTIDQLIKELPELLQRNREILDEALRMLDEEE 103 (339)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHhcCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777778888888887775210 0001122334333 44445555554444444444433333
Q ss_pred ---HHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCcccccc
Q 004858 77 ---AAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNE---IYRSTIYISSKT 150 (727)
Q Consensus 77 ---~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~e---L~g~~~~~~~~~ 150 (727)
..+....|.. ........-..+|..++..|+..|+....-=..=...|.....-|.-||.- |. .+.+
T Consensus 104 ~ed~~~R~k~g~~-Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~sD~~v~~k~~~~~~~l~lLs~~~~~l~---~~lP--- 176 (339)
T cd09235 104 ASDNQLRAQFKER-WTRTPSNKLTKPLRAEGSKYRTILDNAVQADKIVREKYESHREGIELLSKPEEELA---NAIP--- 176 (339)
T ss_pred hHHHHHHHHhCCc-CCCCChHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHH---HhCC---
Confidence 3444555642 111112222346888899999999987776666666677777666666541 21 0111
Q ss_pred cccc-CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 151 VVDE-TGL-SLRKLEEFHRELHELQKEKSDRMKQVQDHLNT 189 (727)
Q Consensus 151 ~vd~-~dL-S~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~ 189 (727)
.... ..+ ....+..|+..+.++..-+.+|.....+++..
T Consensus 177 ss~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~ 217 (339)
T cd09235 177 SASPAKTLQGSEAVQELRQLMEQVETIKAEREVIESELKSA 217 (339)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 112 23577888888888888888888877766443
No 147
>cd03488 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit religation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. This family may represent more than one structural domain.
Probab=36.14 E-value=50 Score=34.24 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004858 469 LRQEKEQERRRQRDQKKLKEQLIAEQEALYGSK 501 (727)
Q Consensus 469 ~r~eKE~ek~r~R~~kK~q~q~~~e~e~~~Gs~ 501 (727)
+..++|+-+.+-++.||...+.+.+.|..||-.
T Consensus 94 ~~~~~e~kK~~tkeEKk~~K~ek~~~e~~Y~~~ 126 (215)
T cd03488 94 FKAQKEEKKAMSKEEKKAIKAEKEKLEEEYGFC 126 (215)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEE
Confidence 556666666666677766655556668888854
No 148
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=35.92 E-value=2.8e+02 Score=25.39 Aligned_cols=70 Identities=24% Similarity=0.362 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC----CCc-cccCCHHHHHHHHHHHHH
Q 004858 38 KMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNR----QSD-QTAGNLKEELRNILPQLE 112 (727)
Q Consensus 38 ~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~----~~d-~~~~~LkeqL~~i~~~LE 112 (727)
+.|.-.|+|. ++.|+++.+......++...++.++ ...|..+.... .++ .....|+.+|+..+-++.
T Consensus 8 ~qLqFvEEEa-~LlRRkl~ele~eN~~l~~EL~kyk-------~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~ 79 (96)
T PF11365_consen 8 RQLQFVEEEA-ELLRRKLSELEDENKQLTEELNKYK-------SKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQIN 79 (96)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 3444445544 8889998888877777776555554 44543221000 010 112347776666555555
Q ss_pred HHH
Q 004858 113 EMR 115 (727)
Q Consensus 113 eLr 115 (727)
.|.
T Consensus 80 ~Ls 82 (96)
T PF11365_consen 80 ELS 82 (96)
T ss_pred HHh
Confidence 543
No 149
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=35.91 E-value=4.9e+02 Score=26.53 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHhc
Q 004858 297 DHVEAEVTRLEELKSSKMKELVLK-------KQSELEEICRKN 332 (727)
Q Consensus 297 e~le~EV~RLeeLK~~~mkelI~k-------~R~ELeeLWdk~ 332 (727)
+.+..|++|.+..|..-++..+.. ...++.++|...
T Consensus 191 ~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 191 ENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETF 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457788888888887776665532 234555566543
No 150
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=35.76 E-value=8.3e+02 Score=29.18 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHH---
Q 004858 297 DHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEE--- 373 (727)
Q Consensus 297 e~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~--- 373 (727)
..|+.||+||- |++ ..--+-.+++|.++|=....-+ - +.+=..+..||++|+.+
T Consensus 4 RKLq~eIdr~l-------kKv-~Egve~Fd~i~ek~~~~~n~sq-k--------------eK~e~DLKkEIKKLQRlRdQ 60 (575)
T KOG2150|consen 4 RKLQQEIDRCL-------KKV-DEGVEIFDEIYEKLHSANNVSQ-K--------------EKLESDLKKEIKKLQRLRDQ 60 (575)
T ss_pred hHHHHHHHHHH-------HHh-hhhHHHHHHHHHHHHhcCChhH-H--------------HHHHHHHHHHHHHHHHHHHH
Confidence 35777888763 332 3334457889999985442111 1 11222244444444333
Q ss_pred ----------------HHhhhHHHHHHHHHHHHhHHHHHHHHHcCChhhhhcCCCCchhchHHHHHHHHhhh-hhHHHHH
Q 004858 374 ----------------AFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNK-LPGMVET 436 (727)
Q Consensus 374 ----------------~~srK~Ile~Vekw~~l~eE~~~LE~~~kDpnR~~nrrGah~~LlrEEK~Rk~v~K-LPklee~ 436 (727)
..-|+=|=..+++|+ +|+.+.--..+++- |=|..-.|-..||++.-+.- |-.++++
T Consensus 61 IKtW~ss~dIKDK~~L~d~RrlIE~~MErfK-~vEke~KtKa~Ske------gL~~~~klDPkEkek~d~~~wi~~~ide 133 (575)
T KOG2150|consen 61 IKTWQSSSDIKDKDSLLDNRRLIEQRMERFK-AVEKEMKTKAFSKE------GLSAAEKLDPKEKEKRDTMDWISNQIDE 133 (575)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHHHHHHH-HHHHHhhccccchh------hccccccCChHHHHHHHHHHHHHHHHHH
Confidence 344555555555553 33333333333332 33444558889999986554 9999999
Q ss_pred HHHHHHHHHH
Q 004858 437 LASKTIAWET 446 (727)
Q Consensus 437 L~~~l~~WE~ 446 (727)
|-..+..+|.
T Consensus 134 Le~q~d~~ea 143 (575)
T KOG2150|consen 134 LERQVDSFEA 143 (575)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 151
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=35.63 E-value=9.5e+02 Score=29.82 Aligned_cols=118 Identities=15% Similarity=0.252 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004858 160 RKLEEFHRELHELQK--EKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLR 237 (727)
Q Consensus 160 e~LeeL~~~L~~Lq~--EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~Le 237 (727)
++|.+++.-|.-|.. ++++|...+..+++.+..+.. | .+.. .|....++..+..+.-+.
T Consensus 151 ~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vs-----p---------~Lv~-----al~~~~~~~~~~~~~if~ 211 (766)
T PF10191_consen 151 DRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVS-----P---------QLVQ-----ALNSRDVDAAKEYVKIFS 211 (766)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhh-----H---------HHHH-----HHHhcCHHHHHHHHHHHH
Confidence 666777776666664 578888888888888666543 1 0100 011222344444443333
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHH
Q 004858 238 EVKIQRMQKL-----QDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSS 312 (727)
Q Consensus 238 eeK~~R~~kl-----~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~ 312 (727)
.. .|...+ .-....|..+|......... ..|.....+ +=+..+..++.|+.-+-.+=-.
T Consensus 212 ~i--~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~~-~~~~~~L~~-------------fyd~ll~~l~~E~~w~~~vF~~ 275 (766)
T PF10191_consen 212 SI--GREPQLEQYYCKCRKAPLQRLWQEYCQSDQS-QSFAEWLPS-------------FYDELLSLLHQELKWCSQVFPD 275 (766)
T ss_pred Hc--CCHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHcCC
Confidence 22 333333 33455788899876665422 233332211 2246777777777776555433
No 152
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.60 E-value=4.5e+02 Score=28.94 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 53 RKVDEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 53 ~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
..+.........+.+.+..++.+.+.+..+|.
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555544443
No 153
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=35.53 E-value=8.7e+02 Score=29.31 Aligned_cols=62 Identities=11% Similarity=0.284 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 112 EEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNT 189 (727)
Q Consensus 112 EeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~ 189 (727)
.....++.++.+++.+|+.+++.|...+.... ..++.+...+..+..+..+.......+..+
T Consensus 317 ~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~----------------~~~~~l~~~~~q~~~e~~~~~~~~~~le~~ 378 (594)
T PF05667_consen 317 ETEEDEQEEQEQELEELQEQLDELESQIEELE----------------AEIKMLKSSLKQLEEELEEKEAENEELEEE 378 (594)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888888888888888774321 455666666666666666555555555444
No 154
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.30 E-value=5.2e+02 Score=26.85 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 105 RNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETG-LSLRKLEEFHRELHELQKEKSDRMKQV 183 (727)
Q Consensus 105 ~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~d-LS~e~LeeL~~~L~~Lq~EK~~Rl~kv 183 (727)
.-+..+|.+.+.+-..+..++..|+.++....+.+.....-.. ...+.. --.-.|+....+|+....+..--..++
T Consensus 13 sLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~---~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl 89 (202)
T PF06818_consen 13 SLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQ---ELQDSLRTKQLELEVCENELQRKKNEAELLREKL 89 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhh
Confidence 3444555566666677888899999998888887754321000 000000 011344555555655555555555566
Q ss_pred HHHHHHHHHHHHHhCC
Q 004858 184 QDHLNTLNSFCSVLGM 199 (727)
Q Consensus 184 ~el~~~I~~L~~~Lg~ 199 (727)
..+-.+|..|-..+..
T Consensus 90 ~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 90 GQLEAELAELREELAC 105 (202)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 6666666666665554
No 155
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.21 E-value=5.1e+02 Score=27.21 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICS 81 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~ 81 (727)
...++++....+..+...+..+.+|++.|-.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777788888888877777654
No 156
>cd00660 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit re-ligation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanosomatid parasite topo I diffe
Probab=34.97 E-value=53 Score=34.04 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004858 469 LRQEKEQERRRQRDQKKLKEQLIAEQEALYGSK 501 (727)
Q Consensus 469 ~r~eKE~ek~r~R~~kK~q~q~~~e~e~~~Gs~ 501 (727)
+..++|+-|.+-++.||...+.+.+.|..||-.
T Consensus 94 ~~~~~e~kK~~s~eEKk~~K~ek~~~e~~Y~~~ 126 (215)
T cd00660 94 FEEEKEKKKAMSKEEKKAIKEEKEKLEEPYGYC 126 (215)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEE
Confidence 556666666666677766655556668888854
No 157
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=34.92 E-value=7e+02 Score=28.06 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccccccc-cCCCCHHHHHHHHHHHHHHHH
Q 004858 121 RKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVD-ETGLSLRKLEEFHRELHELQK 174 (727)
Q Consensus 121 R~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd-~~dLS~e~LeeL~~~L~~Lq~ 174 (727)
-...+.++...|..|=..||..++..+. ...+ ...+-...++.|..++.-|..
T Consensus 207 ~la~~a~LE~RL~~LE~~lG~~~~~~~~-l~~~~~~~~l~~~l~~L~~~lslL~~ 260 (388)
T PF04912_consen 207 QLARAADLEKRLARLESALGIDSDKMSS-LDSDTSSSPLLPALNELERQLSLLDP 260 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccc-ccccCCcchHHHHHHHHHHHHHhcCH
Confidence 4566788888888888888653321110 0111 122335778888888888854
No 158
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=34.53 E-value=9.7e+02 Score=29.58 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCC---CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004858 64 HLRQTIADYEAELAAICSAMAEPPVHN---RQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIY 140 (727)
Q Consensus 64 ~L~qsIa~~~~EL~~L~~eLGe~p~~~---~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (727)
.++..+.++..+.+.++..|...+... ......+..+..+++.++..++....-...-.+.+.....-++-+|.-
T Consensus 439 ~~l~~~~~~l~~ea~~~~~lr~~~~~~~~~~~s~~~~~~~~~e~~k~~~~l~~a~~~d~~~~~~~~~~~~~~~ll~~~-- 516 (714)
T KOG2220|consen 439 EILDEIEEALDEEAALDNKLRAKLGQRWTRTRSSELTLALYEELEKLREVLEPAKAADVQLKKAFEAHKKNIRLLSLP-- 516 (714)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcchhhhcCC--
Confidence 455555556666666666554332211 112223334555566666666554444333333333333333333321
Q ss_pred cCCCccccccccc-c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 141 RSTIYISSKTVVD-E-TGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLN 191 (727)
Q Consensus 141 g~~~~~~~~~~vd-~-~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~ 191 (727)
.|+..++.+..+ . +.-+.+.+..++..+..+++.+++|..-..++...|.
T Consensus 517 -~~e~~~~lp~~~~~~~~~~~~~~~~~k~~l~~~~e~k~~r~~L~~~l~~~i~ 568 (714)
T KOG2220|consen 517 -PPELQPSLPSLDGPLNPNSDEIVRQLKGYLDDLEELKAEREKLEGDLKVDIF 568 (714)
T ss_pred -CchhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 112111223333 1 3445678899999999999999999999888888876
No 159
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=34.17 E-value=4.2e+02 Score=25.37 Aligned_cols=40 Identities=5% Similarity=0.103 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004858 102 EELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYR 141 (727)
Q Consensus 102 eqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g 141 (727)
.........-+.|+.......+++.....+++.+...+..
T Consensus 29 ~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 29 QESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666677777888888899999999999888853
No 160
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=34.09 E-value=5.5e+02 Score=26.54 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 62 RAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVL 129 (727)
Q Consensus 62 k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~ 129 (727)
|.++.+-+.-.+.++..+-. |-.+ ....+..+++.|+.|..+|+.|..--..|..++..|+
T Consensus 134 k~e~EqLL~YK~~ql~~~~~--~~~~-----~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 134 KREFEQLLDYKERQLRELEE--GRSK-----SGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhhhc--cCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555544 3222 2244667888899999999999999888888887764
No 161
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=34.08 E-value=2.7e+02 Score=24.28 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCC-----CcHHHHHHHHHHHHHHHHHHHh
Q 004858 318 VLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTT-----DPANVLEQIELQIAKAKEEAFS 376 (727)
Q Consensus 318 I~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~-----d~eeLLe~~E~EI~rLke~~~s 376 (727)
|+..+.||+-+-+...+|-. +|+ .|..|+. .+...+++++.||.+||+....
T Consensus 12 IE~~~~eIe~LL~~AkiSl~-----DyI--miKRGS~DmPe~l~~~~~~QideeV~~LKe~Ida 68 (79)
T PF10398_consen 12 IENAQEEIEILLKIAKISLV-----DYI--MIKRGSQDMPEHLNMAFLAQIDEEVEKLKEHIDA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHT--HH-----HHH--HHHTTSS---TTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHH-----HHH--HhcccCCcCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999998888743 333 3556654 4678899999999999988643
No 162
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=33.83 E-value=14 Score=46.10 Aligned_cols=89 Identities=15% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLE 130 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~ 130 (727)
+...|+++.+.+..+-+.-..+..++.+|...|-.-.-.-...++....+..+|..++..+++......+-......+..
T Consensus 136 L~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~ 215 (859)
T PF01576_consen 136 LNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQS 215 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555532110000122334456666666666666666665555555555555
Q ss_pred HHHHHHHHh
Q 004858 131 QIQMIKNEI 139 (727)
Q Consensus 131 qI~~Lc~eL 139 (727)
++..|...|
T Consensus 216 E~~eL~~qL 224 (859)
T PF01576_consen 216 ENSELTRQL 224 (859)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 555555554
No 163
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.35 E-value=7e+02 Score=27.55 Aligned_cols=145 Identities=16% Similarity=0.196 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004858 159 LRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLRE 238 (727)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~Lee 238 (727)
.-.++.|+..+..|+.|-..-..++..+......+-. .-...+ .+....+.-.+..|..|...+.+-.+
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Ee----kEqqLv-------~dcv~QL~~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEE----KEQQLV-------LDCVKQLSEANQQIASLSEELARKTE 227 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccH----HHHHHH-------HHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 3577888888888888766655555555544222111 000001 01011233356778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004858 239 VKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELV 318 (727)
Q Consensus 239 eK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI 318 (727)
+-....+.|..|.++|..|=.++.--.-|-+....... .+.++=..+.+|+.-|++-..+.+.-|
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~--------------~ske~Q~~L~aEL~elqdkY~E~~~mL- 292 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ--------------ASKESQRQLQAELQELQDKYAECMAML- 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88888888888888888776665543333333322211 244666778899999988888877666
Q ss_pred HHHHHHHHHHH
Q 004858 319 LKKQSELEEIC 329 (727)
Q Consensus 319 ~k~R~ELeeLW 329 (727)
...+.+|..+-
T Consensus 293 ~EaQEElk~lR 303 (306)
T PF04849_consen 293 HEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHhh
Confidence 67788887764
No 164
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=33.11 E-value=5.1e+02 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 004858 360 LEQIELQIAKAKEEAFSRKDILEKIDKWLAA 390 (727)
Q Consensus 360 Le~~E~EI~rLke~~~srK~Ile~Vekw~~l 390 (727)
...|+.-++||+-+...|+.+.+..+++...
T Consensus 86 ~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~ 116 (355)
T PF09766_consen 86 DDEHQLMLARLEFELEQRKRLEEQLKELEQR 116 (355)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999888888777543
No 165
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.02 E-value=1e+03 Score=29.34 Aligned_cols=228 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 55 VDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQM 134 (727)
Q Consensus 55 Vde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~ 134 (727)
+...+....+|...|...+..-++|.+.|..-..... .++.+|..++...|+|+.+.....+.-..=+..++.
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er-------~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~ 492 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNER-------SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ 492 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCC
Q 004858 135 IKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGN 214 (727)
Q Consensus 135 Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e 214 (727)
+-..|. +....-...=.+|.+|+..|.++-..-...+-.--..-+...+..-
T Consensus 493 LEkrL~-------------------eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r--------- 544 (697)
T PF09726_consen 493 LEKRLA-------------------EERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCR--------- 544 (697)
T ss_pred HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHH---------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHH
Q 004858 215 SEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVD 294 (727)
Q Consensus 215 ~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d 294 (727)
.....|..++.+|+.+-+.+.+.+..+..++.+|-..-.-...+.+..+.
T Consensus 545 ---------~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~--------------------- 594 (697)
T PF09726_consen 545 ---------QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMS--------------------- 594 (697)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---------------------
Q ss_pred HHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHH
Q 004858 295 FIDHVEAEVTRLEE-------LKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQI 367 (727)
Q Consensus 295 ~Ie~le~EV~RLee-------LK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI 367 (727)
.|.+++..=..|+. +|...+.-| -+.|.+|+.+ ...|..-|.||
T Consensus 595 aL~amqdk~~~LE~sLsaEtriKldLfsaL-g~akrq~ei~----------------------------~~~~~~~d~ei 645 (697)
T PF09726_consen 595 ALSAMQDKNQHLENSLSAETRIKLDLFSAL-GDAKRQLEIA----------------------------QGQLRKKDKEI 645 (697)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHH----------------------------HHHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 004858 368 AKAKEEAFS 376 (727)
Q Consensus 368 ~rLke~~~s 376 (727)
..||...+.
T Consensus 646 ~~lk~ki~~ 654 (697)
T PF09726_consen 646 EELKAKIAQ 654 (697)
T ss_pred HHHHHHHHH
No 166
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.89 E-value=6e+02 Score=26.68 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCCHHH
Q 004858 250 LATTMLELWNLMDTPIEE 267 (727)
Q Consensus 250 L~~~L~eLW~~L~ip~EE 267 (727)
...++..+|+.+.+..++
T Consensus 147 ~~ek~r~vlea~~~E~~y 164 (251)
T PF11932_consen 147 LAEKFRRVLEAYQIEMEY 164 (251)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344666677766664433
No 167
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.45 E-value=9.1e+02 Score=28.60 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 104 LRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRST-IYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQ 182 (727)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~-~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~k 182 (727)
-.++..+|+...++|.....++..+...|..|-++|.... .| .++|..+-.||..|.+......++
T Consensus 443 c~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY-------------E~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 443 CRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY-------------EEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777788888889999999999999995331 12 278999999999999988888888
Q ss_pred HHHHH
Q 004858 183 VQDHL 187 (727)
Q Consensus 183 v~el~ 187 (727)
+..++
T Consensus 510 I~~LK 514 (518)
T PF10212_consen 510 IQTLK 514 (518)
T ss_pred HHHHh
Confidence 77765
No 168
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.19 E-value=5.2e+02 Score=25.69 Aligned_cols=26 Identities=8% Similarity=0.294 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 104 LRNILPQLEEMRKRKSDRKEQFVQVL 129 (727)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~ 129 (727)
++.....++.++....+..+++.++.
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 169
>COG5293 Predicted ATPase [General function prediction only]
Probab=31.51 E-value=9e+02 Score=28.27 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 14 TSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAI 79 (727)
Q Consensus 14 ~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L 79 (727)
+.-.+..+.+.|++++|.-=... +...+ .|...+||++|++- ++-+...|+.+++.|..+
T Consensus 295 ~~~~~pd~i~~~ye~vg~~fpg~--Vkk~~-e~v~~F~r~~~e~R---~~yl~~ei~~i~~dLk~~ 354 (591)
T COG5293 295 QILFCPDEIQVLYEEVGVLFPGQ--VKKDF-EHVIAFNRAITEER---HDYLQEEIAEIEGDLKEV 354 (591)
T ss_pred hccCChHHHHHHHHHhhhcChHH--HHHhH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33446778899999999532221 11122 35778999999863 334455555555554444
No 170
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=31.47 E-value=6.5e+02 Score=26.66 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q 004858 68 TIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYIS 147 (727)
Q Consensus 68 sIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~ 147 (727)
.+..-..+-..+....|.. ........-...+..++..++..|+....--..-...|.....-|.-||.-.. ....
T Consensus 51 ~L~~E~~ed~~~r~~~g~~-W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~---~L~~ 126 (296)
T PF13949_consen 51 MLDEEEREDEQLRAKYGER-WTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIE---ELEA 126 (296)
T ss_dssp HHHHHHHHHHHHHHHSTTT-CGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHH---HHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChh---hHHh
Confidence 3333344445555566652 11111112234688888888888888766665555556665555555543110 0000
Q ss_pred cccccc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 148 SKTVVD--ETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNT 189 (727)
Q Consensus 148 ~~~~vd--~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~ 189 (727)
..|..+ ..+-..+.+..|+..|..+..-+.+|...+.+++..
T Consensus 127 ~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~ 170 (296)
T PF13949_consen 127 SLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEK 170 (296)
T ss_dssp HS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 122236777888888888888888887777766653
No 171
>PRK03918 chromosome segregation protein; Provisional
Probab=31.18 E-value=1.1e+03 Score=29.21 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 004858 292 SVDFIDHVEAEVTRLEELKS 311 (727)
Q Consensus 292 S~d~Ie~le~EV~RLeeLK~ 311 (727)
..+.++.++.++..|+....
T Consensus 450 ~~el~~~~~~ei~~l~~~~~ 469 (880)
T PRK03918 450 RKELLEEYTAELKRIEKELK 469 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777765443
No 172
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.02 E-value=1.1e+02 Score=34.26 Aligned_cols=93 Identities=16% Similarity=0.263 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc-ccccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 106 NILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISS-KTVVD-ETGLSLRKLEEFHRELHELQKEKSDRMKQV 183 (727)
Q Consensus 106 ~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~-~~~vd-~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv 183 (727)
.-|.+|++|+..+..--..+.++..++.+|..+|....+-+.. .-.++ .......++...+..|.+.+.++...-.-|
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V 296 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGV 296 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5667788888888887888888888888888887543321100 00111 122233455556666666666666666666
Q ss_pred HHHHHHHHHHHHHhC
Q 004858 184 QDHLNTLNSFCSVLG 198 (727)
Q Consensus 184 ~el~~~I~~L~~~Lg 198 (727)
.+...++..+..+|.
T Consensus 297 ~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 297 SERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666554
No 173
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.83 E-value=5.2e+02 Score=25.27 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSD 178 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~ 178 (727)
.|+....++...|+.....+..-..+-..-+..|..|-.+|.... ..+..|...|..+..++..
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt----------------~el~~L~~EL~~l~sEk~~ 84 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT----------------SELNQLELELDTLRSEKEN 84 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 004858 179 RMKQVQDHLNTLNSF 193 (727)
Q Consensus 179 Rl~kv~el~~~I~~L 193 (727)
=.+.+...+..|..|
T Consensus 85 L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 85 LDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHH
No 174
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=30.65 E-value=2.5e+02 Score=29.46 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHH------------------HcCCeeEECCchHHHhHHHHHHHHHHHHHHHHHH
Q 004858 419 RAEKARSLVNKLPGMVETLASKTIAWET------------------ERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQ 480 (727)
Q Consensus 419 rEEK~Rk~v~KLPklee~L~~~l~~WE~------------------e~g~pFl~dG~~lLe~lee~~~~r~eKE~ek~r~ 480 (727)
|++..-+...|+|+++.++..++..=+. .+|...-...-+|.+||++- | .++|++.
T Consensus 122 Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~eml~~k-----E-keeKKk~ 195 (217)
T PF10147_consen 122 REKEIAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEMLQEK-----E-KEEKKKK 195 (217)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHHHHHH-----H-HHHHHHH
Confidence 4555555566778887777776653322 24555556677899999533 2 2334445
Q ss_pred HHHHHHH
Q 004858 481 RDQKKLK 487 (727)
Q Consensus 481 R~~kK~q 487 (727)
++.||-+
T Consensus 196 K~aKkk~ 202 (217)
T PF10147_consen 196 KEAKKKE 202 (217)
T ss_pred HHHHHHH
Confidence 5665543
No 175
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.39 E-value=6.4e+02 Score=27.71 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 163 EEFHRELHELQKEKSDRMKQVQDHLNTL 190 (727)
Q Consensus 163 eeL~~~L~~Lq~EK~~Rl~kv~el~~~I 190 (727)
+.++..+..++++...-..++.....++
T Consensus 102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 102 NELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 176
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=30.10 E-value=7.7e+02 Score=27.06 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccc--cC-C------HH--HHHHHHHHHHHHH
Q 004858 46 ECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQT--AG-N------LK--EELRNILPQLEEM 114 (727)
Q Consensus 46 e~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~--~~-~------Lk--eqL~~i~~~LEeL 114 (727)
+...+|....++. .+..+...|..+-.++......|++|..-. ..+.. +. + +. ..++.+...++.|
T Consensus 6 ea~s~Y~E~k~~l--vr~e~~~~~e~~~~~l~~~L~slnLP~sl~-~l~~~~~lP~~~~~~~~i~~~gg~~~l~~~~~~l 82 (342)
T cd08915 6 ESASAYNERQDDY--VREHIVEPIEALNKLLNSFLAERNLPASID-DLQKPENLPDSIQHSQEIIEEGGLDNIEQSFKEL 82 (342)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHH-HhcCCCCCCchHHHHHHHHccCcHHHHHHHHHHH
Confidence 3567888877765 445556888889999999999999864211 01000 00 0 00 0133444455555
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhccCCCccccccccccCCC-CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 004858 115 RKRKSDRKEQFVQVLEQI---QMIKNEIYRSTIYISSKTVVDETGL-SLRKLEEFHRELHELQKEKSDRM---KQVQDHL 187 (727)
Q Consensus 115 rk~K~eR~~ef~~l~~qI---~~Lc~eL~g~~~~~~~~~~vd~~dL-S~e~LeeL~~~L~~Lq~EK~~Rl---~kv~el~ 187 (727)
......-...+.+....+ ..=|..+- ..|+.. -..-+ |..--..|+..+..++.-...=. ..+....
T Consensus 83 ~~l~~~~~~~l~~~~~~L~~E~~ed~~~R--~k~g~~----~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~ 156 (342)
T cd08915 83 SKLRQNVEELLQECEELLEEEAAEDDQLR--AKFGTL----RWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNEVLQCY 156 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHhCcc----cCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444333333322222 11111110 012210 01122 43334445555544443322211 2244444
Q ss_pred HHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 188 NTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTM 254 (727)
Q Consensus 188 ~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L 254 (727)
..+......|+.+..... ...|+..+. .+..+ ...+..|+..+.+|..+|.+|...+.+++.++
T Consensus 157 ~~~~~~l~lL~~~~~~l~-~~~Ps~~~~-~~~~~-~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~ 220 (342)
T cd08915 157 ESIDPNLVLLCGGYKELK-AFIPSPYPA-LDPEV-SEVVSSLRPLLNEVSELEKERERFISELEIKS 220 (342)
T ss_pred HHHHHHHHHhcCChHHHH-HhCCCcccc-CCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566677776665432 223421110 01111 26789999999999999999999999887764
No 177
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=29.74 E-value=6.1e+02 Score=30.24 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHH
Q 004858 55 VDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQL-EEMRK-RKSDRKEQFVQVLEQI 132 (727)
Q Consensus 55 Vde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~L-EeLrk-~K~eR~~ef~~l~~qI 132 (727)
.+..+..-.+|...|.+++.++.+....=-..-.+.- .....|..+...+...+ +-+.. .-..-..++.+...+.
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~---~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~ 85 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSL---QSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEEL 85 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q ss_pred HHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCC
Q 004858 133 QMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQ-KEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPS 211 (727)
Q Consensus 133 ~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq-~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~ps 211 (727)
..|..+|........ ..+.|.++...+..++ ...+.+.-.......++..+...++-+.....
T Consensus 86 ~~L~~eL~~~~~~l~----------~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~------ 149 (593)
T PF06248_consen 86 QELKRELEENEQLLE----------VLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEEL------ 149 (593)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCccccc------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004858 212 FGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLM 261 (727)
Q Consensus 212 l~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L 261 (727)
..+..|+.....+ ...+...+.+.|+.+
T Consensus 150 ------------~i~~~Lk~e~~~l----------r~~L~~~L~~~w~~l 177 (593)
T PF06248_consen 150 ------------KILKLLKDEYSEL----------RENLQYQLSEEWERL 177 (593)
T ss_pred ------------HHHHHHHHHHHHH----------HHHHHHHHHHHHHhh
No 178
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.73 E-value=1.1e+03 Score=28.81 Aligned_cols=163 Identities=10% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCc---------cccCCHHHHHHHHHHHHHHHHHHHHH
Q 004858 50 VYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSD---------QTAGNLKEELRNILPQLEEMRKRKSD 120 (727)
Q Consensus 50 vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d---------~~~~~LkeqL~~i~~~LEeLrk~K~e 120 (727)
+....+.+.+..........++.++.+..+...+.........++ .....|+.++..+..++.+|..+.-+
T Consensus 234 ~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~ 313 (754)
T TIGR01005 234 LATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLA 313 (754)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCC
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004858 121 RKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMD 200 (727)
Q Consensus 121 R~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d 200 (727)
..-++..++.+|..+-..|. +++...+..++.++..=......+..++..+-..+.--
T Consensus 314 ~hP~v~~l~~qi~~l~~~i~----------------------~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~ 371 (754)
T TIGR01005 314 NHPRVVAAKSSLADLDAQIR----------------------SELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQA 371 (754)
T ss_pred CCHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred hhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 201 FKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATT 253 (727)
Q Consensus 201 ~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~ 253 (727)
+... ..+..|+...+-.+..+..-+++.++....
T Consensus 372 ~~~~-------------------~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 372 GEQQ-------------------VDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred cHhH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 179
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.42 E-value=9.4e+02 Score=28.99 Aligned_cols=253 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHH
Q 004858 32 TDTDKDKMLLELEQ----ECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNI 107 (727)
Q Consensus 32 ~e~eRd~ml~elEq----e~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i 107 (727)
+.+++++.+..|.+ |+.+.-....++....-.+....+.++...+.......|..+.. .......++.+-.+..
T Consensus 14 ~~~~~~~~l~~L~~lg~vhi~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~ 91 (646)
T PRK05771 14 LKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREE--KKKVSVKSLEELIKDV 91 (646)
T ss_pred EHHHHHHHHHHHHhCCCEEEeecccccchhHHhHHHHHHHHHHHHHHHHHHhccccccchhh--hccccccCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHH---HHHHHHHHHHHHHHHH--
Q 004858 108 LPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFH---RELHELQKEKSDRMKQ-- 182 (727)
Q Consensus 108 ~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~---~~L~~Lq~EK~~Rl~k-- 182 (727)
...++++.++-.+..++..++.++++.+-..+..-..+. +.|+..+.+...+ -.+-.+.++..++...
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~-------~ld~~l~~~~~~~~~~~~~G~i~~~~~~~~~~~~ 164 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWG-------NFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLES 164 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------cCCCCHHHhCCCCcEEEEEEEecchhhhhHHhhc
Q ss_pred ---------------------HHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004858 183 ---------------------VQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKI 241 (727)
Q Consensus 183 ---------------------v~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~ 241 (727)
-.+...++..++..++......-....| .+.+.+|+..+++++.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~~p~~~~p------------~~~l~~l~~~l~~l~~~~~ 232 (646)
T PRK05771 165 DVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTP------------SELIREIKEELEEIEKERE 232 (646)
T ss_pred cCceEEEEEecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEecCCCCCCH------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHH
Q 004858 242 QRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTR 305 (727)
Q Consensus 242 ~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~R 305 (727)
.-.+++.++......+-.....--...............+..-..-.+-+-.+.++.++..+++
T Consensus 233 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~~l~~ 296 (646)
T PRK05771 233 SLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDK 296 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHHHHHH
No 180
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.31 E-value=5e+02 Score=24.63 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
++.+-+..+...++.+.+....-.+++..+..++..+...|
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665666666666666666555555555555555555544
No 181
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.83 E-value=7.9e+02 Score=29.68 Aligned_cols=89 Identities=26% Similarity=0.272 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHH
Q 004858 292 SVDFIDHVEAEVTRLEELKSS------KMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIEL 365 (727)
Q Consensus 292 S~d~Ie~le~EV~RLeeLK~~------~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~ 365 (727)
...-|..++.-|+||+..-+. .|+..|.+++.+|+++-+.++.. .+. .-=++..+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~--~~~----------------~rei~~~~~ 481 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK--VRK----------------DREIRARDR 481 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh----------------hHHHHHHHH
Confidence 455666777777777654432 24444555555555554444411 111 122456777
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHH
Q 004858 366 QIAKAKEEAFSRKDILEKIDKWLAACEEESWLE 398 (727)
Q Consensus 366 EI~rLke~~~srK~Ile~Vekw~~l~eE~~~LE 398 (727)
+|.+|+..+...+.-.+-.++-..-...+..||
T Consensus 482 ~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE 514 (652)
T COG2433 482 RIERLEKELEEKKKRVEELERKLAELRKMRKLE 514 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777776555444444444433333333343
No 182
>PRK10869 recombination and repair protein; Provisional
Probab=28.33 E-value=1.1e+03 Score=28.13 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004858 120 DRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGM 199 (727)
Q Consensus 120 eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~ 199 (727)
.|+.....+.+-+......|.+... + . ....|......|..+ ..++.++..+.+....+.....++..
T Consensus 215 ~~L~n~e~i~~~~~~~~~~L~~~~~---------~-~-~~~~l~~~~~~l~~~-~~~d~~~~~~~~~l~~~~~~l~~~~~ 282 (553)
T PRK10869 215 KRLANSGQLLTTSQNALQLLADGEE---------V-N-ILSQLYSAKQLLSEL-IGMDSKLSGVLDMLEEALIQIQEASD 282 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc---------c-c-HHHHHHHHHHHHHHH-hhhCHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666632100 0 0 134444555555555 33344444444333333333333222
Q ss_pred ChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004858 200 DFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQ 242 (727)
Q Consensus 200 d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~ 242 (727)
+..... +...+.+..|+.+...+..|...|.+
T Consensus 283 ~l~~~~-----------~~~~~dp~~l~~ie~Rl~~l~~L~rK 314 (553)
T PRK10869 283 ELRHYL-----------DRLDLDPNRLAELEQRLSKQISLARK 314 (553)
T ss_pred HHHHHH-----------hhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 221111 11234556677777777777666554
No 183
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.22 E-value=1e+03 Score=27.90 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHhcC
Q 004858 295 FIDHVEAEVTRLEELKSSK---MKELVLKKQSELEEICRKNH 333 (727)
Q Consensus 295 ~Ie~le~EV~RLeeLK~~~---mkelI~k~R~ELeeLWdk~~ 333 (727)
-++.++.|+..|.-+-... ...+|++.+-++.++-..|.
T Consensus 534 E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n 575 (622)
T COG5185 534 EIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLN 575 (622)
T ss_pred HHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHH
Confidence 4566677766666544332 34556666666666655554
No 184
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.13 E-value=4.9e+02 Score=30.44 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIY 140 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (727)
.|.+-++.+..++.+++.+..+--.++.++..+|..+-.+|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667788888888888877777777888888887777764
No 185
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.10 E-value=5.7e+02 Score=25.84 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 104 LRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
|+.+...+..|+.+-.++-.++.+...-++.+-+|+
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444
No 186
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.03 E-value=5.6e+02 Score=30.30 Aligned_cols=30 Identities=7% Similarity=0.309 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 55 VDEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 55 Vde~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
++.+.+.|..+...++.+...+..|-++|-
T Consensus 450 L~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 450 LESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555554
No 187
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=28.02 E-value=1.1e+03 Score=28.36 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004858 163 EEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGM 199 (727)
Q Consensus 163 eeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~ 199 (727)
+.|....++||.-...-...|...+.+..+|...|-.
T Consensus 218 qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeLkKkmke 254 (812)
T KOG1451|consen 218 QDFKPFKDQLQTSVQNTRNNFNATRAEAEELKKKMKE 254 (812)
T ss_pred hhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHHhh
Confidence 3445555555555555555566666666666665543
No 188
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=28.02 E-value=6.6e+02 Score=25.88 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 39 MLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAEL 76 (727)
Q Consensus 39 ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL 76 (727)
.|..+..+|-..|++|..+.-..-.+=.+.|.++..|-
T Consensus 85 ~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EK 122 (192)
T PF09727_consen 85 ELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEK 122 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667888888887774433333334444444443
No 189
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.38 E-value=7.4e+02 Score=26.00 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcc
Q 004858 317 LVLKKQSELEEICRKNHMVPE 337 (727)
Q Consensus 317 lI~k~R~ELeeLWdk~~~s~e 337 (727)
=|.-+...|..|+...+++..
T Consensus 260 ~v~lLn~nI~~L~~~q~~~~~ 280 (302)
T PF10186_consen 260 AVFLLNKNIAQLCFSQGIDVP 280 (302)
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 345556677778776555544
No 190
>PRK03918 chromosome segregation protein; Provisional
Probab=27.19 E-value=1.3e+03 Score=28.66 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHh
Q 004858 355 DPANVLEQIELQIAKAKEEAFS 376 (727)
Q Consensus 355 d~eeLLe~~E~EI~rLke~~~s 376 (727)
+..+++..++.++..++..+..
T Consensus 449 ~~~el~~~~~~ei~~l~~~~~~ 470 (880)
T PRK03918 449 HRKELLEEYTAELKRIEKELKE 470 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777666543
No 191
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.92 E-value=6.8e+02 Score=25.41 Aligned_cols=38 Identities=32% Similarity=0.320 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004858 48 LQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAE 85 (727)
Q Consensus 48 l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe 85 (727)
+.++.-++.........|.+.+....+||..|-+.|..
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 34455555555556677889999999999999888874
No 192
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=26.75 E-value=1.3e+03 Score=28.72 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCcchhhhhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004858 6 DPFLQEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAE 85 (727)
Q Consensus 6 ~~~~~~~~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe 85 (727)
+-+.|.+.....|+++|... .++++..|.+.--....=|...-.+....-..+-+.++.+.+|-..|+..|..
T Consensus 45 ~r~~hld~aLkec~~qlr~~-------ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~ 117 (769)
T PF05911_consen 45 DRVSHLDGALKECMRQLRQV-------REEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQE 117 (769)
T ss_pred HHhhhhhHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHH
Q 004858 86 PPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEF 165 (727)
Q Consensus 86 ~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL 165 (727)
.. ....-|.++.......+..|..+-+.--++...|+-++..+..+|.... +..+-=
T Consensus 118 ~~-------~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~----------------~E~~~~ 174 (769)
T PF05911_consen 118 KE-------KLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRN----------------EEREYS 174 (769)
T ss_pred HH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 166 HRELHELQKEKSDRMKQVQDHLNTLNSF 193 (727)
Q Consensus 166 ~~~L~~Lq~EK~~Rl~kv~el~~~I~~L 193 (727)
..-.+.-.+..-+-++++..+-.+|+.|
T Consensus 175 ~~~ae~a~kqhle~vkkiakLEaEC~rL 202 (769)
T PF05911_consen 175 RRAAEAASKQHLESVKKIAKLEAECQRL 202 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 193
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=26.37 E-value=1.2e+03 Score=28.15 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Q 004858 357 ANVLEQIELQIAKAKEEAFSR-KDILEKIDKWLAA 390 (727)
Q Consensus 357 eeLLe~~E~EI~rLke~~~sr-K~Ile~Vekw~~l 390 (727)
..+|...|.+|.+|-..+... +..-+..++|...
T Consensus 284 ~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~q 318 (629)
T KOG0963|consen 284 GSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQ 318 (629)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777766544 5555555666443
No 194
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.23 E-value=4.2e+02 Score=22.75 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004858 37 DKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAE 85 (727)
Q Consensus 37 d~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe 85 (727)
+..|.+||.. +.+....|++.|..-.+-.+.|..+.+++..|...|+.
T Consensus 7 e~Ri~~LE~~-lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESR-LAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677753 36677789999988888888999999999988877654
No 195
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=26.21 E-value=2.1e+02 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCC
Q 004858 63 AHLRQTIADYEAELAAICSAMAEPPV 88 (727)
Q Consensus 63 ~~L~qsIa~~~~EL~~L~~eLGe~p~ 88 (727)
.-.+....++.+++..++++||++|.
T Consensus 69 nPa~~i~~~a~~~~~~l~~elGLtP~ 94 (116)
T TIGR01558 69 NPALTVVEDAFKQLRSIGSALGLTPS 94 (116)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33466678889999999999999874
No 196
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=26.19 E-value=1e+03 Score=27.16 Aligned_cols=324 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC--
Q 004858 13 TTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHN-- 90 (727)
Q Consensus 13 ~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~-- 90 (727)
++....+.+...+=-.+|.=-..-...+.-|.+.+..-....-+-.+..-..+...+....++|......|...+++.
T Consensus 26 ~~ar~~l~~~~~~~~k~~fl~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~ 105 (412)
T PF04108_consen 26 TSARQSLEESVPLSAKTGFLRRGLKQQLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNTKVPPFF 105 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCccc
Q ss_pred ---CCCccccC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccCCCccccccccc
Q 004858 91 ---RQSDQTAG---------NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIK-----NEIYRSTIYISSKTVVD 153 (727)
Q Consensus 91 ---~~~d~~~~---------~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc-----~eL~g~~~~~~~~~~vd 153 (727)
....+.+. .|+.-++.....+...+..-+.=+.+|......+.+.. ........+........
T Consensus 106 ~~~~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 185 (412)
T PF04108_consen 106 RPPGEEPKTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSSP 185 (412)
T ss_pred cCCCCCCCcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCC
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChhhhcccccCCCCCCCCC-------------
Q 004858 154 ETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVL--GMDFKLTVSQIHPSFGNSEGS------------- 218 (727)
Q Consensus 154 ~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~L--g~d~~~~v~ev~psl~e~~~~------------- 218 (727)
....|..-+..+-..+..|+.+-.+=++-+..+=.+|....... +-.......+.-..|..|...
T Consensus 186 ~~~~s~~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~ 265 (412)
T PF04108_consen 186 SSSSSNPLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLD 265 (412)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHH
Q ss_pred ----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHhhhhcc
Q 004858 219 ----------------RSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPI----EEQQMFQNVTCNI 278 (727)
Q Consensus 219 ----------------~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~----EEr~~F~~~~~~i 278 (727)
..........+...+..|..-+. ++.........+...|.....+. ++-..+...+.++
T Consensus 266 ~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F 344 (412)
T PF04108_consen 266 EMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGE-RLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGF 344 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHH
Q 004858 279 AASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPAN 358 (727)
Q Consensus 279 ~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~ee 358 (727)
. .....+=.||.|=... ..+|+.++.....+|..+.+ .|.+..-.|...+ |+.-|++
T Consensus 345 ~--------------~aY~~LL~Ev~RRr~~-~~k~~~i~~~~~eeL~~l~e-----eE~~~Re~F~~e~---GdyLP~d 401 (412)
T PF04108_consen 345 L--------------SAYDSLLLEVERRRAV-RDKMKKIIREANEELDKLRE-----EEQRRREAFLKEY---GDYLPED 401 (412)
T ss_pred H--------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHc---cCcCChh
Q ss_pred HH
Q 004858 359 VL 360 (727)
Q Consensus 359 LL 360 (727)
++
T Consensus 402 iw 403 (412)
T PF04108_consen 402 IW 403 (412)
T ss_pred hC
No 197
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.16 E-value=1.4e+03 Score=28.61 Aligned_cols=85 Identities=18% Similarity=0.321 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-c--cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 109 PQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKT-V--VDETGLSLRKLEEFHRELHELQKEKSDRMKQVQD 185 (727)
Q Consensus 109 ~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~-~--vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~e 185 (727)
.+.|.|+..+..-.+....++.++=.|.+-+...++|..... . ...++|+ +.|+..|..++.+...-.+++..
T Consensus 934 e~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLn----ekLr~rL~q~eaeR~~~reqlrQ 1009 (1480)
T COG3096 934 EQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLN----EKLRQRLEQAEAERTRAREQLRQ 1009 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777888888888887776677653211 1 1223443 46888999999998888888888
Q ss_pred HHHHHHHHHHHh
Q 004858 186 HLNTLNSFCSVL 197 (727)
Q Consensus 186 l~~~I~~L~~~L 197 (727)
...+..++-.+|
T Consensus 1010 ~Q~Q~sqYnqvl 1021 (1480)
T COG3096 1010 HQAQLSQYNQVL 1021 (1480)
T ss_pred HHHHHHHHHHHH
Confidence 888776655444
No 198
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.08 E-value=8.6e+02 Score=26.32 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 160 RKLEEFHRELHELQKEKSDRMKQVQDHLNTLN 191 (727)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~ 191 (727)
+..+.|...|+.|-..+-.|..-+.-+..++.
T Consensus 225 dEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle 256 (267)
T PF10234_consen 225 DEYEKLEEELQKLYEIYVEKFRNLDYLEHQLE 256 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44555555555555555555555555554443
No 199
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=25.72 E-value=1e+03 Score=26.96 Aligned_cols=148 Identities=14% Similarity=0.255 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHH-
Q 004858 100 LKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSD- 178 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~- 178 (727)
.+..+..+-.++.+.+.+- ..-...+..||..|. ..++... .+-.+--.+++|.-|-.-++.|+.-...
T Consensus 62 a~~~i~~L~~~i~~ik~kA-------~~sE~~V~~it~dIk-~LD~AKr--NLT~SIT~LkrL~MLv~a~~qL~~~~~~r 131 (383)
T PF04100_consen 62 AQEAIQELFEKISEIKSKA-------EESEQMVQEITRDIK-QLDNAKR--NLTQSITTLKRLQMLVTAVEQLKELAKKR 131 (383)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344555555555544433 335566677888773 2222110 1111122245555555555566554333
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------
Q 004858 179 RMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQK-LQDL------- 250 (727)
Q Consensus 179 Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~k-l~~L------- 250 (727)
+..++..+...+.+|+... ... -|-..|..|...+..|+..-...+.. +..+
T Consensus 132 ~Y~e~a~~L~av~~L~~~F----~~y----------------ksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~ 191 (383)
T PF04100_consen 132 QYKEIASLLQAVKELLEHF----KPY----------------KSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDE 191 (383)
T ss_pred CHHHHHHHHHHHHHHHHHH----Hcc----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3445555555555544322 111 02245566666666655443333222 1221
Q ss_pred -----HHHHHHHHHhcCC-CHHHHHHHHhhhhc
Q 004858 251 -----ATTMLELWNLMDT-PIEEQQMFQNVTCN 277 (727)
Q Consensus 251 -----~~~L~eLW~~L~i-p~EEr~~F~~~~~~ 277 (727)
...+.+-|..++. ..+.|+.+..-+|+
T Consensus 192 ~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~ 224 (383)
T PF04100_consen 192 SPGQSSQQLSDACLVVDALGPDVREELIDWFCN 224 (383)
T ss_pred cccchHhHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 2345555555555 55566666655553
No 200
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=25.71 E-value=7.2e+02 Score=25.24 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=65.0
Q ss_pred hhhhhHHHHHHHHHHH---------HhHhCCChhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 10 QEETTSGSLIEQLQII---------WDEVGETDTDKDKMLLELEQE---------CLQVYRRKVDEANRCRAHLRQTIAD 71 (727)
Q Consensus 10 ~~~~~c~s~L~eLq~I---------WdEIG~~e~eRd~ml~elEqe---------~l~vyr~kVde~~~~k~~L~qsIa~ 71 (727)
+-...|+.+=.+|..- |..-.....+-+.++..|+.| .-.+||..+++++..-+.|...|..
T Consensus 27 qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~k 106 (182)
T PF15035_consen 27 QYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQK 106 (182)
T ss_pred HHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677776666332 322222222334444454332 3346899999999988999999999
Q ss_pred HHHHHHHHHHhhCCCCCC-----------CCCCccccCCHHHHHHHHHHHHHHHHHHHH
Q 004858 72 YEAELAAICSAMAEPPVH-----------NRQSDQTAGNLKEELRNILPQLEEMRKRKS 119 (727)
Q Consensus 72 ~~~EL~~L~~eLGe~p~~-----------~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~ 119 (727)
+..++..+..+|...... ..........|-.++..++.++-+|+..-+
T Consensus 107 lt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~Te 165 (182)
T PF15035_consen 107 LTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATE 165 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888542100 000012234455666677777776666544
No 201
>PF02919 Topoisom_I_N: Eukaryotic DNA topoisomerase I, DNA binding fragment; InterPro: IPR008336 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the N-terminal DNA-binding domain found in eukaryotic topoisomerase I, which is a type IB enzymes. To cleave the DNA backbone, these enzymes must make a transient phosphotyrosine bond. The N-terminal domain of human topoisomerase I is thought to coordinate the restriction of free strand rotation during the topoisomerisation step of catalysis. A conserved tryptophan residue may be important for the DNA-interaction ability of the N-terminal domain []. Human topoisomerase I has been shown to be inhibited by camptothecin (CPT), a plant alkaloid with antitumour activity. A binding mode for the anticancer drug camptothecin has been proposed on the basis of chemical and biochemical information combined with the three-dimensional structures of topoisomerase I-DNA complexes []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003917 DNA topoisomerase type I activity, 0006265 DNA topological change, 0005694 chromosome; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A ....
Probab=25.54 E-value=52 Score=34.22 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004858 469 LRQEKEQERRRQRDQKKLKEQLIAEQEALYGSK 501 (727)
Q Consensus 469 ~r~eKE~ek~r~R~~kK~q~q~~~e~e~~~Gs~ 501 (727)
+..++|.-+.+-++.|+...+.+.+.+..||-.
T Consensus 95 ~~~~~e~kk~~skeEK~~~K~~k~~~~~~y~~~ 127 (215)
T PF02919_consen 95 FEKEKEKKKNMSKEEKKALKEEKEELEEKYGYC 127 (215)
T ss_dssp HHHHHHHHCTS-CCHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcEE
Confidence 445555554445555554444456678888854
No 202
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.47 E-value=1.2e+03 Score=27.58 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 46 ECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICS 81 (727)
Q Consensus 46 e~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~ 81 (727)
..++..-..|.++++.-+.-.-.|+.++..+.+|..
T Consensus 355 ~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~ 390 (508)
T KOG3091|consen 355 IRINAIGERVTELQKHHADAVAKIEEAKNRHVELSH 390 (508)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344556666777776666667778888877777754
No 203
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.40 E-value=5.5e+02 Score=27.38 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 159 LRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCS 195 (727)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~ 195 (727)
..+-+.|+....+|++|...=.+++..++.+|..|-.
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999998888888888888776654
No 204
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=25.34 E-value=8.3e+02 Score=25.88 Aligned_cols=125 Identities=11% Similarity=0.145 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CC
Q 004858 12 ETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPP--VH 89 (727)
Q Consensus 12 ~~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p--~~ 89 (727)
++..+.+|...-..+..||....+- ...+++.++.-+++.++..-+.-....+.+...+-.+......+.-.. ..
T Consensus 76 ~s~lg~~L~~~g~a~~~ia~~~~~~---d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~ 152 (244)
T cd07595 76 DSLLGKVLKLCGEAQNTLARELVDH---EMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSG 152 (244)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccc
Confidence 4445666777677777776544433 344566666666666543322222333344444444444444442110 00
Q ss_pred CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 004858 90 NRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQV-LEQIQMIKNEI 139 (727)
Q Consensus 90 ~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l-~~qI~~Lc~eL 139 (727)
..........|++++......+++-+.....+|..|.+- .+.+..|..-+
T Consensus 153 ~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv 203 (244)
T cd07595 153 GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLI 203 (244)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 000112234688888888888888888888887777766 45555555433
No 205
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=25.24 E-value=1.3e+03 Score=28.28 Aligned_cols=292 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004858 119 SDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLG 198 (727)
Q Consensus 119 ~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg 198 (727)
.+|.-.|+.-.--+..-|.++.+. .-.+..+.+.+.|.-.-.|+.+..++..|.+-...|..++...-.+ -..|.
T Consensus 306 ser~s~~v~~el~~~~~~~e~~es-~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~----ka~le 380 (961)
T KOG4673|consen 306 SERISDFVSRELDSRLDTSELNES-QRSSSATNVSDSDDVQLELDKTKKEIKMLNNALEAREAQLLADEIA----KAMLE 380 (961)
T ss_pred ccccchHHHHHhccchhhHHhhhc-cCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q ss_pred CChhhhcccccCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhh
Q 004858 199 MDFKLTVSQIHPSFGNSEGSRSISDDT---IEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVT 275 (727)
Q Consensus 199 ~d~~~~v~ev~psl~e~~~~~~LS~~t---L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~ 275 (727)
-.|...+.+....-.+.....++-.+. +..|.+.++-+-.++..-..++..++..+..--.+ +....
T Consensus 381 e~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~--------DeLaE-- 450 (961)
T KOG4673|consen 381 EEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK--------DELAE-- 450 (961)
T ss_pred HHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--------HHHHH--
Q ss_pred hccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCC
Q 004858 276 CNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTD 355 (727)
Q Consensus 276 ~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d 355 (727)
-++.|.++.+|=+.|-.-.... ..+|.|+|+++.+-=...---.+.-.....-..-+.+.-.+
T Consensus 451 ----------------kdE~I~~lm~EGEkLSK~ql~q-s~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~ 513 (961)
T KOG4673|consen 451 ----------------KDEIINQLMAEGEKLSKKQLAQ-SAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRD 513 (961)
T ss_pred ----------------HHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhh
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCChhhh-hcCCCCchhchHHHHHHHHhhhhhHHH
Q 004858 356 PANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRY-NAGRGSHLILKRAEKARSLVNKLPGMV 434 (727)
Q Consensus 356 ~eeLLe~~E~EI~rLke~~~srK~Ile~Vekw~~l~eE~~~LE~~~kDpnR~-~nrrGah~~LlrEEK~Rk~v~KLPkle 434 (727)
.+++=..|-.-|.++..+...-++-+....-.....+....-+..+.|.-|= .--++. |+++| +|..-.-+-.-+
T Consensus 514 Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nr---lkQde-ar~~~~~lvqqv 589 (961)
T KOG4673|consen 514 KEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENR---LKQDE-ARERESMLVQQV 589 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhh---hhhhH-HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 004858 435 ETLASKTIAWET 446 (727)
Q Consensus 435 e~L~~~l~~WE~ 446 (727)
.+|+.+|..-|+
T Consensus 590 ~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 590 EDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHHHHHHHH
No 206
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.99 E-value=1.2e+02 Score=34.00 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 224 DTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNL 260 (727)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~ 260 (727)
+.|..|...+..+...-....+.+..+...|.+||++
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355555555555554445555666777888888886
No 207
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.54 E-value=9.7e+02 Score=26.37 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 218 SRSISDDTIEQLTTA--------IQKLREVKIQRMQKLQDLATTMLE 256 (727)
Q Consensus 218 ~~~LS~~tL~~L~~~--------l~~LeeeK~~R~~kl~~L~~~L~e 256 (727)
...+|.++...|... +.+|-.+|..-+.+|..+..+|.+
T Consensus 198 ~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 198 RALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred ccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778887777666 788888888777777777776644
No 208
>PRK10780 periplasmic chaperone; Provisional
Probab=24.47 E-value=6.8e+02 Score=24.57 Aligned_cols=110 Identities=12% Similarity=0.230 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHH-----------HHHHHHHHH
Q 004858 105 RNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEE-----------FHRELHELQ 173 (727)
Q Consensus 105 ~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~Lee-----------L~~~L~~Lq 173 (727)
......-..|.+.-..+..++..+..+++.....+.-. ...+|...... |+...+.++
T Consensus 39 p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~-----------~~~ms~~~~~~~~~el~~~~~~~q~~~~~~q 107 (165)
T PRK10780 39 PQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRD-----------GSTMKGSDRTKLEKDVMAQRQTFSQKAQAFE 107 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455666777778888888888888888877322 22344433333 333344444
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHh----CCChhhhcccccCCCCCCCCCCCCCHHHHHHH
Q 004858 174 KEKSDRMKQ-VQDHLNTLNSFCSVL----GMDFKLTVSQIHPSFGNSEGSRSISDDTIEQL 229 (727)
Q Consensus 174 ~EK~~Rl~k-v~el~~~I~~L~~~L----g~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L 229 (727)
.+...|..+ ...+...|....... |++.- +. ....+.- .+..+||++.|..|
T Consensus 108 q~~~~~~~e~~~~i~~ki~~ai~~vak~~gy~~V--ld-~~~v~Y~-~~~~DIT~~Vik~l 164 (165)
T PRK10780 108 QDRRRRSNEERNKILTRIQTAVKSVANKQGYDLV--VD-ANAVAYN-SSDKDITADVLKQV 164 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE--Ee-CCceeee-CCCCCchHHHHHhh
Confidence 444444433 344555555555443 44321 11 0111111 13578999988876
No 209
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.37 E-value=1.1e+03 Score=26.91 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CC-cc--ccccccccCCCCHHHHHHHHHHH
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRS------TI-YI--SSKTVVDETGLSLRKLEEFHREL 169 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~------~~-~~--~~~~~vd~~dLS~e~LeeL~~~L 169 (727)
-|.++ ++++..=+.|.++-++|.+++..++.++..=.+.|... |- .. +..|..+...+...-|++|+..+
T Consensus 347 aLEEK-aaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCikaKsq~~~p~~r~~~p~pnp~pidp~~leefkrri 425 (442)
T PF06637_consen 347 ALEEK-AALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIKAKSQPMTPGPRPVGPVPNPPPIDPASLEEFKRRI 425 (442)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Confidence 45555 77788888888888888888888887776555544311 10 01 11112223456678888988766
Q ss_pred HH
Q 004858 170 HE 171 (727)
Q Consensus 170 ~~ 171 (727)
-+
T Consensus 426 le 427 (442)
T PF06637_consen 426 LE 427 (442)
T ss_pred Hh
Confidence 43
No 210
>PF14992 TMCO5: TMCO5 family
Probab=24.32 E-value=8.7e+02 Score=26.49 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 53 RKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEE---LRNILPQLEEMRKRKSDRKEQFVQVL 129 (727)
Q Consensus 53 ~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~Lkeq---L~~i~~~LEeLrk~K~eR~~ef~~l~ 129 (727)
..++++|. .+++.|...+..++.|-+++-.........|+......+. |..+...-..|.+..+-..+.+.+++
T Consensus 14 Q~ldE~Nq---~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq 90 (280)
T PF14992_consen 14 QRLDEANQ---SLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQ 90 (280)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhh
Q ss_pred HHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 130 EQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVL 197 (727)
Q Consensus 130 ~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~L 197 (727)
.++..=...+.+..+.....+.. |...++.+...+..++++...-.....+...-+.+-|..+
T Consensus 91 ~k~~e~~~~~~~e~~~~~~~lq~-----sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i 153 (280)
T PF14992_consen 91 RKQDEQETNVQCEDPQLSQSLQF-----SKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEI 153 (280)
T ss_pred hhhccccCCCCCCccchhcccHH-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 211
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.10 E-value=7.8e+02 Score=28.16 Aligned_cols=108 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHH
Q 004858 222 SDDTIEQLTTAIQKLREVKIQRMQKLQDLATTML-ELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVE 300 (727)
Q Consensus 222 S~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~-eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le 300 (727)
....+..+...+..+++....-...++.|...+. ++=-.+..=+|||-.... +|
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~er-------------------------LE 264 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYER-------------------------LE 264 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------------------------HH
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHH
Q 004858 301 AEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAK 371 (727)
Q Consensus 301 ~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLk 371 (727)
..|+-+-++...-| ..++.+|..++.+|.|=-.+|...- .|.++.+...|.+|+
T Consensus 265 eqlNd~~elHq~Ei----~~LKqeLa~~EEK~~Yqs~eRaRdi-------------~E~~Es~qtRisklE 318 (395)
T PF10267_consen 265 EQLNDLTELHQNEI----YNLKQELASMEEKMAYQSYERARDI-------------WEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHH
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.06 E-value=1.2e+03 Score=27.27 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHH
Q 004858 35 DKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEM 114 (727)
Q Consensus 35 eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeL 114 (727)
.....+.+++|.=++-.+...+........+.+...+++++-..+-+.|. +.....--+..||..++..-..|
T Consensus 336 y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~-------q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 336 YYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQ-------QLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHH
Q 004858 115 RKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHEL 172 (727)
Q Consensus 115 rk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~L 172 (727)
++...-+...++.+.++....+.... +++..|+.+|..|
T Consensus 409 ~knq~vw~~kl~~~~e~~~~~~~s~d-------------------~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 409 IKNQDVWRGKLKELEEREKEALGSKD-------------------EKITDLQEQLRDL 447 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHhH
No 213
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=23.89 E-value=3.7e+02 Score=28.70 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHH
Q 004858 159 LRKLEEFHRELHELQKEKSD-------RMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTT 231 (727)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~-------Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~ 231 (727)
..-++.+...+.+|...... -..++-++.-.+.+++..+|+|++..+ ..+..++..
T Consensus 154 ~~~~~k~~EE~~El~~a~~~~~~~~~~ieeElGDlLFalvnlAr~~giDpE~AL-----------------r~a~~KF~~ 216 (248)
T TIGR00444 154 SPVWDKVYEELDEVMYEARQAVVEQNKLEEEMGDLLFATVNLARHLKTDAEIAL-----------------QKANEKFER 216 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-----------------HHHHHHHHH
Confidence 45666777777777766533 246789999999999999999999765 234444444
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 004858 232 AIQKLREVKIQRMQKLQD-LATTMLELWNL 260 (727)
Q Consensus 232 ~l~~LeeeK~~R~~kl~~-L~~~L~eLW~~ 260 (727)
.....+..-..+-..+.+ -..++..||+.
T Consensus 217 Rf~~~E~~~~~~g~~~~~~slee~~~lW~~ 246 (248)
T TIGR00444 217 RFREVERIVAARGLELTGVDLEEMEELWQQ 246 (248)
T ss_pred HHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 444444333333333444 44677888864
No 214
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=23.88 E-value=9.1e+02 Score=25.82 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhHhCCChhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 004858 16 GSLIEQLQIIWDEVGETDTDK------------DKMLLELEQECLQVYRRKVDEANRCRAHLRQTIA---DYEAELAAIC 80 (727)
Q Consensus 16 ~s~L~eLq~IWdEIG~~e~eR------------d~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa---~~~~EL~~L~ 80 (727)
-..|++|-.=|.- -+.+.+| |+.|-+....+..+|+.+|+-.- ...+|.++++ .-+.||..+.
T Consensus 73 ~~~LeeliNkWs~-el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~-~qkrLdq~L~~I~sqQ~ELE~~L 150 (254)
T KOG2196|consen 73 YKTLEELINKWSL-ELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKL-DQKRLDQELEFILSQQQELEDLL 150 (254)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777853 2233333 56666777778899998776543 3345655544 4455555555
Q ss_pred HhhC
Q 004858 81 SAMA 84 (727)
Q Consensus 81 ~eLG 84 (727)
..|-
T Consensus 151 ~~lE 154 (254)
T KOG2196|consen 151 DPLE 154 (254)
T ss_pred HHHH
Confidence 5443
No 215
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.78 E-value=1e+03 Score=27.92 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCC
Q 004858 309 LKSSKMKELVLKKQSELEEICRKNHM 334 (727)
Q Consensus 309 LK~~~mkelI~k~R~ELeeLWdk~~~ 334 (727)
.+...++..+..+|.-|.+|=.+-|.
T Consensus 275 ~r~~~Lk~H~~svr~HI~~Ls~K~Y~ 300 (475)
T PRK10361 275 TRESALQEHIASVRNHIRLLGRKDYQ 300 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 34567888888999999988766553
No 216
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=23.72 E-value=1.4e+03 Score=27.84 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCc-----------
Q 004858 224 DTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLS----------- 292 (727)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS----------- 292 (727)
.+.+.+.++..+|.+.+.+ ....+.-+.-+..+|+.- ++.|+.|..-+..|.+-++--.....|+
T Consensus 248 ~t~~ta~kLs~qldnv~~e-v~~~~se~~vv~ky~~~v---e~ar~~F~~EL~si~p~l~~~d~~~~L~~~dln~liaha 323 (657)
T KOG1854|consen 248 ATKDTAHKLSNQLDNVKRE-VSSSNSEAEVVGKYSELV---EKARHQFEQELESILPGLSLADKEENLSEDDLNKLIAHA 323 (657)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCchhhhhhhccHhHHHHHHHHH
Confidence 4444444445555555544 444555666777888753 4568888765555544111111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004858 293 VDFIDHVEAEVTRLEELKSSKMKELVLKKQSE 324 (727)
Q Consensus 293 ~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~E 324 (727)
.--|++|..++.+.+.=-..+++..|++.|-.
T Consensus 324 h~rvdql~~~l~d~k~~~~~~~~~aiEk~Rl~ 355 (657)
T KOG1854|consen 324 HTRVDQLQKELEDQKADEELHIKRAIEKQRLQ 355 (657)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 23356667777776655555666777776644
No 217
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=23.50 E-value=1.3e+03 Score=27.41 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHH
Q 004858 222 SDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLM---DTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDH 298 (727)
Q Consensus 222 S~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L---~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~ 298 (727)
++..+..++++++.+-++-...++....|.+.|..+=.+. -+..+++...... ..|.=+.
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~-----------------~~da~~q 272 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA-----------------YKDAQRQ 272 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------------HHhhHHH
Confidence 3444555555555544444444444444444444433322 2333444444332 3366788
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCC-c----HHHHHHHH-------HH
Q 004858 299 VEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTD-P----ANVLEQIE-------LQ 366 (727)
Q Consensus 299 le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d-~----eeLLe~~E-------~E 366 (727)
+++|+.-|+.-.++.|..| ....++|..+-..-.--.-.+. +...|..+ . .++++... .+
T Consensus 273 l~aE~~EleDkyAE~m~~~-~EaeeELk~lrs~~~p~~~s~~-------~~~~~~~fp~~~~aae~i~lt~r~~~qldee 344 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQML-HEAEEELKCLRSCDAPKLISQE-------ALSHGHHFPQLSLAAEKIELTMRKNLQLDEE 344 (596)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCcchhHHH-------HHHhhhhCChhhHHHHHHHHhhhhhhccccc
Confidence 9999999999999999998 7788888877443221111111 11122111 1 11122111 12
Q ss_pred HHHHHHH-HHhhhHHHHHHHHHHHHhHHHHHHH
Q 004858 367 IAKAKEE-AFSRKDILEKIDKWLAACEEESWLE 398 (727)
Q Consensus 367 I~rLke~-~~srK~Ile~Vekw~~l~eE~~~LE 398 (727)
+..+.-. -+..+-||+-|+........+..|=
T Consensus 345 ~s~~~t~~~~eq~~I~e~ve~i~~ts~q~a~l~ 377 (596)
T KOG4360|consen 345 ASQLDTLEDEEQKRIFETVEQINETSQQMAELP 377 (596)
T ss_pred cccCCccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222111 2355889999999988888888773
No 218
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.44 E-value=8.3e+02 Score=25.22 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----HhccCCCccccccccccCCCC--HHHHHHHHH
Q 004858 98 GNLKEELRNILPQLEEMRKRKSDR----KEQFVQVLEQIQMIKN----EIYRSTIYISSKTVVDETGLS--LRKLEEFHR 167 (727)
Q Consensus 98 ~~LkeqL~~i~~~LEeLrk~K~eR----~~ef~~l~~qI~~Lc~----eL~g~~~~~~~~~~vd~~dLS--~e~LeeL~~ 167 (727)
+.|+.||+.|...|+.....-..| -....-++.|++.|.+ +|..... .. ...+.++. .+.|+.++.
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~-~~---~~~~~~l~~v~~Dl~~ie~ 174 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE-GR---SKSGKNLKSVREDLDTIEE 174 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc-cC---CCCCCCHHHHHHHHHHHHH
Confidence 357788888888888777776663 1122333334333332 1100000 00 01122332 478899999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004858 168 ELHELQKEKSDRMKQVQDHL 187 (727)
Q Consensus 168 ~L~~Lq~EK~~Rl~kv~el~ 187 (727)
++..|+.-...|..++.+|.
T Consensus 175 QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 175 QVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999988887764
No 219
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=23.32 E-value=8.9e+02 Score=25.48 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 004858 12 ETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNR 91 (727)
Q Consensus 12 ~~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~ 91 (727)
++..|.+|...-.-+..||.. +.....++.+..++-+++..+..-+.-..-.+.++..+-.++.--+.+|
T Consensus 83 dS~~G~aL~~~G~A~~kla~~---~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~~------- 152 (223)
T cd07615 83 ESTFGNALLDVGESMKQMAEV---KDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQG------- 152 (223)
T ss_pred CChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------
Confidence 455677777777777777733 3334455566666666655433221111222333333333332222222
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q 004858 92 QSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQV-LEQIQMIKNEIYR 141 (727)
Q Consensus 92 ~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l-~~qI~~Lc~eL~g 141 (727)
-...+++..-..++++-...-..+|..|.+. .+++..|+.-|..
T Consensus 153 ------k~~~eE~~~A~~kfees~E~a~~~M~n~le~e~e~~~~L~~lv~A 197 (223)
T cd07615 153 ------KIPDEEIRQAVEKFEESKELAERSMFNFLENDVEQVSQLSVLIEA 197 (223)
T ss_pred ------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 1236667777778888888888889999888 8888888875543
No 220
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=22.99 E-value=7.2e+02 Score=29.32 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004858 98 GNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRS 142 (727)
Q Consensus 98 ~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~ 142 (727)
..|+.++..+..+++++.++..+-.+.......+....|..++..
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~ 171 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIK 171 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 479999999999999999999999999999999999999999644
No 221
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.96 E-value=8.7e+02 Score=25.24 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Q 004858 160 RKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFK 202 (727)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~ 202 (727)
..|.-|+.+|.+.+.|.+.+..++..++.++...-..|.....
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~ 52 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKES 52 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHH
Confidence 3578899999999999999999999999999988887765443
No 222
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=22.82 E-value=1.1e+03 Score=26.22 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCccccCccCCCCCCCCccccCccccCCC
Q 004858 484 KKLKEQLIAEQEALYGSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTP 536 (727)
Q Consensus 484 kK~q~q~~~e~e~~~Gs~psp~k~~~~~k~~~~~~~~~~~~r~~~~~~~~~~~ 536 (727)
.|+|.-|++=+|-+-|+...++++.. ...+.+..++||.++||+...+.
T Consensus 146 eK~klRLK~LEe~Lk~~~s~~~~~~~----~~~s~~~gps~r~~lgg~~~~~~ 194 (351)
T PF07058_consen 146 EKLKLRLKVLEEGLKGSSSNSSRPTS----EGKSPSNGPSRRQSLGGAENFSK 194 (351)
T ss_pred HHHHHHHHHHHhhccCCCCCCCCCCc----CCCCCCCCCccCcCCCCcccccc
Confidence 46666677777777664433222111 11111222457788887666444
No 223
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=22.78 E-value=9.8e+02 Score=25.79 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 223 DDTIEQLTTAIQKLREVKIQRMQKLQD 249 (727)
Q Consensus 223 ~~tL~~L~~~l~~LeeeK~~R~~kl~~ 249 (727)
.-.|..|...++.|.+.-..-+..+..
T Consensus 119 ~vqIa~L~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 119 AVQIANLVRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777666655555555544
No 224
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.78 E-value=7.6e+02 Score=24.49 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 160 RKLEEFHRELHELQKEKSDRMKQVQDHL 187 (727)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~el~ 187 (727)
+.+..++..++.+........+++.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665555
No 225
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=22.67 E-value=3.5e+02 Score=23.73 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004858 47 CLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAM 83 (727)
Q Consensus 47 ~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eL 83 (727)
++.+|.-.|++....-..+.++=..+...+..+..+|
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L 44 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKL 44 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444444444444444444444444
No 226
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.58 E-value=8.3e+02 Score=26.03 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 53 RKVDEANRCRAHLRQTIADYEAELAAICSA 82 (727)
Q Consensus 53 ~kVde~~~~k~~L~qsIa~~~~EL~~L~~e 82 (727)
..+.+++..-++..+-|+.++..|..+...
T Consensus 6 ~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 6 KELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444445555666677777777777654
No 227
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=22.54 E-value=1.2e+03 Score=26.92 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=41.1
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Q 004858 288 RNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNH 333 (727)
Q Consensus 288 ~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~ 333 (727)
|..+|..-++.|...+..|.+--...+..+..+++...+.+|+.|.
T Consensus 236 Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~ 281 (473)
T PF14643_consen 236 PPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQECL 281 (473)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999999999999999999999886
No 228
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=22.37 E-value=7.7e+02 Score=24.44 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 104 LRNILPQLEEMRKRKSDRKEQFVQVLEQ 131 (727)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~~q 131 (727)
+......+++..++|..-...+.+|..+
T Consensus 114 ykealea~nEknkeK~~Lv~~L~eLv~e 141 (159)
T PF04949_consen 114 YKEALEAFNEKNKEKAQLVTRLMELVSE 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555443
No 229
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.29 E-value=8.5e+02 Score=25.80 Aligned_cols=72 Identities=24% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHH-
Q 004858 37 DKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMR- 115 (727)
Q Consensus 37 d~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLr- 115 (727)
..++.+-+.+...+-. .+++.+..+..|.|+|...+++++.+..-++ .|+++++.++..+.+-+
T Consensus 64 ~~~l~etene~~~~ne-L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q--------------~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 64 KADLRETENELVKVNE-LKTEKEARQMGIEQEIKATQSELEVLRRNLQ--------------LLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhHHHHHHHHHH
Q ss_pred ---HHHHHHHH
Q 004858 116 ---KRKSDRKE 123 (727)
Q Consensus 116 ---k~K~eR~~ 123 (727)
+.++.+.+
T Consensus 129 ~~~Ka~e~~~k 139 (246)
T KOG4657|consen 129 ALSKAKENAGK 139 (246)
T ss_pred HHHHHHHHHHH
No 230
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=22.17 E-value=1.7e+03 Score=28.28 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhHhCCC-hhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 004858 14 TSGSLIEQLQIIWDEVGET-DTDKDKMLL--ELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHN 90 (727)
Q Consensus 14 ~c~s~L~eLq~IWdEIG~~-e~eRd~ml~--elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~ 90 (727)
.-.+...+.....|++|++ +..++..+. ..-+.| .-...++.+.+...++|.+..+.....+..+...+ +.++..
T Consensus 586 ~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~-~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~-e~~~~~ 663 (984)
T COG4717 586 AMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDL-KKLMQKKAELTHQVARLREEQAAFEERVEGLLAVL-EAQFID 663 (984)
T ss_pred hhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccch
Confidence 3344455556666788987 333443322 122223 22445677788888888888888888888887776 444321
Q ss_pred CCCccccCCHHHHH-HHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHhc
Q 004858 91 RQSDQTAGNLKEEL-RNILPQLEEMRK---RKSDRKEQFV-QVLEQIQMIKNEIY 140 (727)
Q Consensus 91 ~~~d~~~~~LkeqL-~~i~~~LEeLrk---~K~eR~~ef~-~l~~qI~~Lc~eL~ 140 (727)
-......+++ .+....-|+.|. .-..|.+++. .|+.+++.--.+|.
T Consensus 664 ----ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~kei~ 714 (984)
T COG4717 664 ----LSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEIL 714 (984)
T ss_pred ----hHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112221 112222222222 1234666666 66666666655553
No 231
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.15 E-value=1.3e+03 Score=27.10 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 104 LRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
++.|...|.+|++...+-.-.+...+.+...|..+|
T Consensus 357 i~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~Ri 392 (508)
T KOG3091|consen 357 INAIGERVTELQKHHADAVAKIEEAKNRHVELSHRI 392 (508)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555566666555554555555555555555544
No 232
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.89 E-value=5.4e+02 Score=22.48 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004858 105 RNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIY 140 (727)
Q Consensus 105 ~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (727)
..+.|.|+.+...-.+-.+.-..|..+|..+..+|.
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444445556666666666553
No 233
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.72 E-value=9.3e+02 Score=25.12 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004858 294 DFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEI 328 (727)
Q Consensus 294 d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeL 328 (727)
..+..++.+|++|+.-=.. .+.-...++.+|...
T Consensus 197 ~~v~~Le~~id~le~eL~~-~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEK-EKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3455566666666543221 122224445555443
No 234
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=21.52 E-value=9.1e+02 Score=24.97 Aligned_cols=137 Identities=12% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLE 130 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~ 130 (727)
++..+...+..|..+.+.+..--.++..-|.+|. ..+.+-.+.|..++..+..+ +|......++.
T Consensus 51 LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~-------------~~i~~~~~~I~~~ik~~Ee~--~k~~k~~~i~~ 115 (215)
T PF07083_consen 51 LNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELI-------------APIDEASDKIDEQIKEFEEK--EKEEKREKIKE 115 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_pred HHHHHHHHhccCCCccc--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc
Q 004858 131 QIQMIKNEIYRSTIYIS--SKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTV 205 (727)
Q Consensus 131 qI~~Lc~eL~g~~~~~~--~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v 205 (727)
-+..+|...+-.+.... ..+.......|+.. ....+..+-......++.+......|...|...|+++..-+
T Consensus 116 ~~~~~~~~~~v~~~~fe~~~~~~wlnks~s~kk---~~eei~~~i~~~~~~~~~~~~~~~~i~~~A~~~~l~~~~yi 189 (215)
T PF07083_consen 116 YFEEMAEEYGVDPEPFERIIKPKWLNKSYSLKK---IEEEIDDQIDKIKQDLEEIKAAKQAIEEKAEEYGLPADPYI 189 (215)
T ss_pred HHHHHHHHcCCChHHHhhhcchHHhhcCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
No 235
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.31 E-value=9.2e+02 Score=28.22 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=31.2
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 93 SDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 93 ~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
+.+.+.+|--+++.++.++..|.++-+.-.++-..|+.+...+-..|
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 33455567777777777777777776666666666666666665555
No 236
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=21.08 E-value=1.3e+03 Score=26.64 Aligned_cols=138 Identities=17% Similarity=0.306 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 004858 100 LKEELRNILPQLEEMRKRKSDRKEQFV----QVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKE 175 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~----~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~E 175 (727)
-..+|.+++..|--||.-+..-...+. .+..++..+-. ++-. . ..+ .=+.+++.-+++
T Consensus 153 ~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~-~~~~---------~-~~~-------s~R~y~e~~k~k 214 (426)
T smart00806 153 QRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS-SSLS---------A-SGS-------SNRAYVESSKKK 214 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc---------c-CCC-------cchHHHHHhHHH
Confidence 346688888888888888877644443 33333333332 1000 0 011 223344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 176 KSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTML 255 (727)
Q Consensus 176 K~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~ 255 (727)
.+..-..+..-+..++.+.+.|.-|.... .+.| +...|+...+.+..+ ...+++++++.....
T Consensus 215 L~~~Sd~lltkVDDLQD~vE~LRkDV~~R--gVRp-----------~~~qLe~v~kdi~~a----~keL~~m~~~i~~eK 277 (426)
T smart00806 215 LSEDSDSLLTKVDDLQDIIEALRKDVAQR--GVRP-----------SKKQLETVQKELETA----RKELKKMEEYIDIEK 277 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCC-----------CHHHHHHHHHHHHHH----HHHHHHHHHHHhhcC
Confidence 55555555555556666666666554332 2333 556777777777766 344566666666666
Q ss_pred HHHHh-----cCCCHHHHHHHH
Q 004858 256 ELWNL-----MDTPIEEQQMFQ 272 (727)
Q Consensus 256 eLW~~-----L~ip~EEr~~F~ 272 (727)
..|.+ |+.=.|||+-|.
T Consensus 278 P~WkKiWE~EL~~VcEEqqfL~ 299 (426)
T smart00806 278 PIWKKIWEAELDKVCEEQQFLT 299 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 66643 444446665443
No 237
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=21.02 E-value=1e+03 Score=29.25 Aligned_cols=145 Identities=14% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCCCCCCccccCCHHHHHHHHHH
Q 004858 33 DTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMA---EPPVHNRQSDQTAGNLKEELRNILP 109 (727)
Q Consensus 33 e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG---e~p~~~~~~d~~~~~LkeqL~~i~~ 109 (727)
.....+--.+++.++.++........+ ...+....+...+.+-..|++.+| ..-......+......+++++.++.
T Consensus 170 ~~~~~k~~~~~~~~~~~~~~~l~~v~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~ 248 (670)
T KOG0239|consen 170 LDLALKESLKLESDLGDLVTELEHVTN-SISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQ 248 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 004858 110 QLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQ---KEKSDRMKQVQDH 186 (727)
Q Consensus 110 ~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq---~EK~~Rl~kv~el 186 (727)
.+..|++...+--.+...+....+.....+.... ..|..+...+.+-. .+...=..++.++
T Consensus 249 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~L~~~~~~l~~~~~e~~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 249 ELEELKAELKELNDQVSLLTREVQEALKESNTLQ----------------SDLESLEENLVEKKKEKEERRKLHNEILEL 312 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHH
Q 004858 187 LNTLNSFC 194 (727)
Q Consensus 187 ~~~I~~L~ 194 (727)
+-.|.-+|
T Consensus 313 kGnIRV~C 320 (670)
T KOG0239|consen 313 KGNIRVFC 320 (670)
T ss_pred hcCceEEE
No 238
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.46 E-value=9.9e+02 Score=24.99 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=58.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004858 159 LRKLEEFHREL-HELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLR 237 (727)
Q Consensus 159 ~e~LeeL~~~L-~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~Le 237 (727)
.++|++...++ ..+..|+..|...+.++.+.|..++..=... .-.+..-+++.|......|.
T Consensus 152 ~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~-----------------~e~f~~~v~~Ei~~lk~~l~ 214 (247)
T PF06705_consen 152 LKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKG-----------------DEQFQNFVLEEIAALKNALA 214 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHHHHH
Confidence 34555544444 4577899999999999999988877522111 12345678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004858 238 EVKIQRMQKLQDLATTMLELW 258 (727)
Q Consensus 238 eeK~~R~~kl~~L~~~L~eLW 258 (727)
.+...|...=.++...|..+=
T Consensus 215 ~e~~~R~~~Dd~Iv~aln~yt 235 (247)
T PF06705_consen 215 LESQEREQSDDDIVQALNHYT 235 (247)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 999999887555655554443
No 239
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.41 E-value=4.6e+02 Score=28.51 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 004858 299 VEAEVTRLEELKSSKMKELV 318 (727)
Q Consensus 299 le~EV~RLeeLK~~~mkelI 318 (727)
+..-++||..|+..+|.+|+
T Consensus 70 ~~~~~erl~~lr~shi~el~ 89 (359)
T KOG4398|consen 70 LRSHYERLANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45668899999999977765
No 240
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=20.38 E-value=1.1e+02 Score=34.32 Aligned_cols=87 Identities=28% Similarity=0.337 Sum_probs=50.3
Q ss_pred CHHHHHHHHhhhhccccchhhhhccCCCcHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhh
Q 004858 264 PIEEQQMFQNVTCNIAASEREITERNTLSVDFIDH-VEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSM 342 (727)
Q Consensus 264 p~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~-le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af 342 (727)
|.+||+.|......+.+ ..+.|+. ++..++.|+++|+..|.+++. -+|..=|...+-+
T Consensus 371 pl~EQ~kI~~~l~~l~~-----------~~d~i~~~~~~~l~~L~~lKqslLqk~ft---G~l~~~~~~~~~~------- 429 (461)
T PRK09737 371 PLEEQAEIVRRVEQLFA-----------YADTIEKQVNNALARVNNLTQSILAKAFR---GELTAQWRAENPS------- 429 (461)
T ss_pred CHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CccccccchhCcc-------
Confidence 46889999876543211 1244444 477889999999999988864 3454445333211
Q ss_pred hHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 004858 343 EYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSR 377 (727)
Q Consensus 343 ~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~sr 377 (727)
+| +++.-.+.||+.+-+|-+..-....+|
T Consensus 430 -----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (461)
T PRK09737 430 -----LI-SGENSAAALLEKIKAERAASGGKKASR 458 (461)
T ss_pred -----cc-CCcChHHHHHHHHHHHHhhccCCCccc
Confidence 00 122234788888776655544333333
No 241
>PRK02119 hypothetical protein; Provisional
Probab=20.34 E-value=5e+02 Score=22.40 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004858 38 KMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAE 85 (727)
Q Consensus 38 ~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe 85 (727)
..|..||. -+.+..+.|++.|..-.+-.+.|..+.+++..|...|+.
T Consensus 9 ~Ri~~LE~-rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEM-KIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566665 336677789999988888888999999999988776643
No 242
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.29 E-value=5.9e+02 Score=24.98 Aligned_cols=49 Identities=24% Similarity=0.417 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcc-ccCCHHHHHHHHHHHHHHHHHH
Q 004858 61 CRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQ-TAGNLKEELRNILPQLEEMRKR 117 (727)
Q Consensus 61 ~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~-~~~~LkeqL~~i~~~LEeLrk~ 117 (727)
.-..|+++|-..+.||..|.. -++ +|. ....|..|+..++.+|.+.+-.
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~---~~~-----pD~~kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLT---ANP-----PDSSKINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---CCC-----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335577777888888887732 211 222 2334555555555555544443
No 243
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=20.27 E-value=3.5e+02 Score=33.30 Aligned_cols=218 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 167 RELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQK 246 (727)
Q Consensus 167 ~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~k 246 (727)
.++++++.....-..++..+...+...-..........+.++...+.+.+....=-+++++.|...+.+|.+.+..-.+.
T Consensus 31 ~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~ 110 (759)
T PF01496_consen 31 RRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNENLEKLEEELNELEEEKNVLEEE 110 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH---HHHHHHHhcCCCHHHHH--HHHhh--hhccccchhhhhccCCCcHHHHHHHHHHHHHHHHH----HHHhhH
Q 004858 247 LQDLAT---TMLELWNLMDTPIEEQQ--MFQNV--TCNIAASEREITERNTLSVDFIDHVEAEVTRLEEL----KSSKMK 315 (727)
Q Consensus 247 l~~L~~---~L~eLW~~L~ip~EEr~--~F~~~--~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeL----K~~~mk 315 (727)
...+.. .-..-|..++.+.+.-. .+..+ ..|. +..+.++.++..+.|...- +...+.
T Consensus 111 ~~~l~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~f~~G~------------I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie 178 (759)
T PF01496_consen 111 IEFLEELKLEELEPWKNLDIDLEELESSKFLNLGFIAGV------------IPREKIESFERILWRATRGNIFIRFSEIE 178 (759)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHTT-----S----
T ss_pred HHHHHhhhhhhhhhhhhcccchhhhccccceeeeEEEEE------------EehhhHHHHHHHHHHhccCCeEEEEEeee
Q ss_pred HHH------------------HHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHH-h
Q 004858 316 ELV------------------LKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAF-S 376 (727)
Q Consensus 316 elI------------------~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~-s 376 (727)
+.. .+.+.++.++|+.+++..-.-......+...-. .-++-++.++.++..++++.. .
T Consensus 179 ~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~~p~~~~~p~e~~~---~l~~~i~~l~~~~~~~~~~l~~~ 255 (759)
T PF01496_consen 179 EILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFERYDLPEDEGTPEEAIK---ELEEEIEELEKELEELEEELKKL 255 (759)
T ss_dssp --EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B----GGGGG-HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeeeeeEEEEEEchhhHHHHHHHhhccCceecCCCCccccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHH
Q 004858 377 RKDILEKIDKWLAACEEESWLED 399 (727)
Q Consensus 377 rK~Ile~Vekw~~l~eE~~~LE~ 399 (727)
.+.+.+.+..|...+..+....+
T Consensus 256 ~~~~~~~l~~~~~~l~~~~~~~~ 278 (759)
T PF01496_consen 256 LEKYAEELEAWYEYLRKEKEIYE 278 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Done!