Query 004858
Match_columns 727
No_of_seqs 265 out of 539
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:01:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrx_A Protein regulator of cy 100.0 2.4E-35 8.1E-40 275.3 15.2 126 368-500 3-130 (130)
2 1i84_S Smooth muscle myosin he 93.3 0.22 7.6E-06 61.9 10.5 18 63-80 923-940 (1184)
3 1i84_S Smooth muscle myosin he 92.4 0.6 2E-05 58.0 12.4 68 56-137 874-941 (1184)
4 3s84_A Apolipoprotein A-IV; fo 77.4 45 0.0015 34.4 15.0 69 58-139 35-104 (273)
5 3na7_A HP0958; flagellar bioge 75.6 72 0.0025 32.2 23.7 83 100-196 44-126 (256)
6 3ol1_A Vimentin; structural ge 74.4 24 0.00081 31.9 10.5 101 12-132 15-117 (119)
7 2xs1_A Programmed cell death 6 74.2 1.4E+02 0.0047 34.8 29.9 110 74-188 469-581 (704)
8 2v71_A Nuclear distribution pr 73.1 73 0.0025 31.2 19.6 80 98-189 6-85 (189)
9 3oja_B Anopheles plasmodium-re 67.3 1.6E+02 0.0055 32.8 19.9 126 52-203 462-587 (597)
10 3na7_A HP0958; flagellar bioge 63.0 1.3E+02 0.0045 30.3 18.9 110 51-188 51-160 (256)
11 2i3t_B Spindle assembly checkp 61.2 2.3 7.8E-05 33.2 0.7 13 701-713 23-35 (54)
12 1go4_E MAD1 (mitotic arrest de 60.1 43 0.0015 29.5 8.7 75 100-178 10-86 (100)
13 3vkg_A Dynein heavy chain, cyt 57.2 48 0.0016 45.4 12.4 96 156-259 2010-2105(3245)
14 3ghg_A Fibrinogen alpha chain; 57.1 14 0.00047 41.5 6.1 87 99-191 54-141 (562)
15 3oja_B Anopheles plasmodium-re 54.6 1.5E+02 0.005 33.2 14.5 78 159-254 455-532 (597)
16 3okq_A BUD site selection prot 53.3 1.4E+02 0.005 27.7 18.2 88 292-406 52-139 (141)
17 1nfn_A Apolipoprotein E3; lipi 52.5 1.4E+02 0.0048 28.9 12.2 51 122-183 105-155 (191)
18 1l8d_A DNA double-strand break 52.2 92 0.0031 27.1 9.9 30 225-254 65-94 (112)
19 2lw1_A ABC transporter ATP-bin 51.6 38 0.0013 28.8 7.0 62 62-128 24-85 (89)
20 2dfs_A Myosin-5A; myosin-V, in 48.1 84 0.0029 38.6 11.8 23 228-250 1020-1042(1080)
21 1go4_E MAD1 (mitotic arrest de 48.0 87 0.003 27.6 8.7 46 156-203 8-53 (100)
22 1l8d_A DNA double-strand break 48.0 1.4E+02 0.0047 25.9 11.4 92 99-198 7-102 (112)
23 3ghg_A Fibrinogen alpha chain; 47.6 57 0.002 36.6 9.1 34 294-328 117-150 (562)
24 1zke_A Hypothetical protein HP 47.4 91 0.0031 26.1 8.1 52 318-376 14-70 (83)
25 3edv_A Spectrin beta chain, br 44.2 2.7E+02 0.0091 28.1 18.6 214 13-248 82-322 (323)
26 3hnw_A Uncharacterized protein 43.9 2E+02 0.0067 26.6 15.7 101 13-140 28-134 (138)
27 2dfs_A Myosin-5A; myosin-V, in 43.2 48 0.0016 40.8 8.5 21 65-85 919-939 (1080)
28 1deq_A Fibrinogen (alpha chain 42.2 63 0.0021 34.9 8.2 34 223-256 112-145 (390)
29 3lay_A Zinc resistance-associa 41.7 2.5E+02 0.0084 27.0 12.0 64 219-310 66-129 (175)
30 3o0z_A RHO-associated protein 41.6 2.4E+02 0.0083 27.0 16.8 74 98-180 65-138 (168)
31 2jo8_A Serine/threonine-protei 41.5 23 0.00078 27.5 3.4 25 361-385 24-49 (51)
32 3s84_A Apolipoprotein A-IV; fo 40.9 3.1E+02 0.011 28.0 27.5 20 58-77 13-32 (273)
33 3r2p_A Apolipoprotein A-I; amp 40.7 81 0.0028 30.3 8.3 29 56-84 78-106 (185)
34 1nfn_A Apolipoprotein E3; lipi 38.1 1.7E+02 0.0057 28.4 10.1 67 52-127 91-157 (191)
35 2i3s_B Checkpoint serine/threo 37.3 9.6 0.00033 27.5 0.7 11 702-712 17-27 (36)
36 3vkg_A Dynein heavy chain, cyt 36.6 4.2E+02 0.014 36.6 16.3 94 98-193 2010-2103(3245)
37 2v4h_A NF-kappa-B essential mo 35.7 2.1E+02 0.0072 25.6 9.2 71 13-84 34-107 (110)
38 1deq_A Fibrinogen (alpha chain 32.4 2.2E+02 0.0075 30.7 10.4 40 100-139 58-97 (390)
39 2lw9_A Unconventionnal myosin- 32.0 69 0.0024 24.5 4.6 38 294-331 6-43 (51)
40 3ol1_A Vimentin; structural ge 31.9 2.4E+02 0.0082 25.2 9.3 34 48-81 22-55 (119)
41 1hs7_A Syntaxin VAM3; UP-and-D 31.4 2.6E+02 0.009 24.3 9.1 48 64-119 10-58 (97)
42 3efg_A Protein SLYX homolog; x 31.1 1.9E+02 0.0065 24.1 7.9 56 29-85 5-60 (78)
43 2v71_A Nuclear distribution pr 29.6 4E+02 0.014 25.9 18.2 38 225-263 142-179 (189)
44 4dci_A Uncharacterized protein 28.8 3.7E+02 0.013 25.2 10.4 67 63-137 39-105 (150)
45 2qyw_A Vesicle transport throu 28.5 2.9E+02 0.01 23.9 10.7 54 62-117 47-100 (102)
46 1fxk_C Protein (prefoldin); ar 28.2 2.7E+02 0.0092 24.8 9.2 92 47-139 9-125 (133)
47 3mq9_A Bone marrow stromal ant 27.4 3.8E+02 0.013 28.9 11.9 45 38-82 373-419 (471)
48 2a01_A Apolipoprotein A-I; fou 26.8 4.8E+02 0.016 25.9 15.5 222 46-332 10-236 (243)
49 2yy0_A C-MYC-binding protein; 26.2 1.2E+02 0.004 23.6 5.3 30 111-140 21-50 (53)
50 1gk4_A Vimentin; intermediate 25.7 2.9E+02 0.01 23.0 9.5 44 99-142 37-80 (84)
51 2c5k_T Syntaxin TLG1, T-snare 25.4 3.3E+02 0.011 23.5 9.9 26 1-28 3-28 (95)
52 3viq_A SWI5-dependent recombin 25.1 1.3E+02 0.0043 27.4 6.1 33 378-412 39-72 (122)
53 3lay_A Zinc resistance-associa 25.0 4.5E+02 0.015 25.2 10.4 65 155-241 66-130 (175)
54 3r6n_A Desmoplakin; spectrin r 24.8 7.1E+02 0.024 27.2 21.0 151 64-249 46-197 (450)
55 3onj_A T-snare VTI1; helix, HA 23.9 3.4E+02 0.012 23.2 10.7 15 31-45 27-41 (97)
56 3swk_A Vimentin; cytoskeleton, 23.1 2E+02 0.0069 24.3 6.7 75 51-139 5-79 (86)
57 3lf9_A 4E10_D0_1IS1A_001_C (T1 21.0 4.7E+02 0.016 23.7 9.3 42 288-329 73-114 (121)
58 3i00_A HIP-I, huntingtin-inter 20.7 4.5E+02 0.015 23.7 8.9 38 99-136 44-81 (120)
59 1yf2_A Type I restriction-modi 20.4 93 0.0032 32.5 5.0 41 264-318 377-417 (425)
No 1
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=100.00 E-value=2.4e-35 Score=275.27 Aligned_cols=126 Identities=29% Similarity=0.465 Sum_probs=115.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCChhhhhcCCCCchhchHHHHHHHHhhh-hhHHHHHHHHHHHHHHH
Q 004858 368 AKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNK-LPGMVETLASKTIAWET 446 (727)
Q Consensus 368 ~rLke~~~srK~Ile~Vekw~~l~eE~~~LE~~~kDpnR~~nrrGah~~LlrEEK~Rk~v~K-LPklee~L~~~l~~WE~ 446 (727)
++|+++|.+||+||++|++|..+|.++..||+|++|||||+|||| +|++|||+|++|+| ||+|+++|+++|.+||.
T Consensus 3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~~Rgg---~LlreEK~Rk~i~k~lP~l~~~L~~~i~~wE~ 79 (130)
T 3nrx_A 3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFTNRGG---NLLKEEKQRAKLQKMLPKLEEELKARIELWEQ 79 (130)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999998666 49999999999998 99999999999999999
Q ss_pred HcCCeeEECCchHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004858 447 ERGVEFLYDGVRLHSML-DEYTILRQEKEQERRRQRDQKKLKEQLIAEQEALYGS 500 (727)
Q Consensus 447 e~g~pFl~dG~~lLe~l-ee~~~~r~eKE~ek~r~R~~kK~q~q~~~e~e~~~Gs 500 (727)
++|.||+|||++|+++| ++|+.+|++||+||+| |++||. +++|+||+|||
T Consensus 80 e~g~~Flv~G~~~le~l~eqw~~~r~~KE~eK~~-R~~kk~---~~~e~e~~~gs 130 (130)
T 3nrx_A 80 EHSKAFMVNGQKFMEYVAEQWEMHRLEKERAKQE-RQLKNK---KQTETEMLYGS 130 (130)
T ss_dssp HHTSCCEETTEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHCC
T ss_pred HcCCeeeEcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHhccCC
Confidence 99999999999999999 5699999999999998 999887 45999999997
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.33 E-value=0.22 Score=61.85 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004858 63 AHLRQTIADYEAELAAIC 80 (727)
Q Consensus 63 ~~L~qsIa~~~~EL~~L~ 80 (727)
.++...++++..+++.+-
T Consensus 923 ~~Le~~l~ele~elee~e 940 (1184)
T 1i84_S 923 QELEEILHEMEARIEEEE 940 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.35 E-value=0.6 Score=58.02 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 56 DEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMI 135 (727)
Q Consensus 56 de~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~L 135 (727)
.........+...+..++.++..+...|.. ...++..+...++.+..++.+-..++.++..++..+
T Consensus 874 ~~le~~l~ele~~l~~Le~e~~~l~~~L~~--------------e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ 939 (1184)
T 1i84_S 874 QKAEAELKELEQKHTQLCEEKNLLQEKLQA--------------ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555555555444431 222333344444444444444444444444444444
Q ss_pred HH
Q 004858 136 KN 137 (727)
Q Consensus 136 c~ 137 (727)
-.
T Consensus 940 ee 941 (1184)
T 1i84_S 940 EE 941 (1184)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 4
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=77.44 E-value=45 Score=34.40 Aligned_cols=69 Identities=12% Similarity=0.224 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 004858 58 ANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDR-KEQFVQVLEQIQMIK 136 (727)
Q Consensus 58 ~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR-~~ef~~l~~qI~~Lc 136 (727)
+...+..+.+.+.+++..+.-...+|.. .+.+.+..++.+|.-+-.+-..+ .+.+.+++.++.-+.
T Consensus 35 ~~~l~~~l~~~le~lr~~L~Py~~el~~-------------~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~ 101 (273)
T 3s84_A 35 ANEVSQKIGDNLRELQQRLEPYADQLRT-------------QVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHA 101 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3345556666677777666666665542 23333444444444333333333 234566666666666
Q ss_pred HHh
Q 004858 137 NEI 139 (727)
Q Consensus 137 ~eL 139 (727)
.+|
T Consensus 102 eel 104 (273)
T 3s84_A 102 DEL 104 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=75.59 E-value=72 Score=32.24 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004858 100 LKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDR 179 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~R 179 (727)
++.++..+...++.+.......-.++..+...|.+.-..|..-. +.+.++.|...++.+..+....
T Consensus 44 l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~--------------~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 44 KNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK--------------SERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--------------SSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777777777888888888888888774211 4477888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004858 180 MKQVQDHLNTLNSFCSV 196 (727)
Q Consensus 180 l~kv~el~~~I~~L~~~ 196 (727)
.+.+.++...|..+-..
T Consensus 110 E~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 110 NREIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888877665444
No 6
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.39 E-value=24 Score=31.93 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 004858 12 ETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQ--ECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVH 89 (727)
Q Consensus 12 ~~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEq--e~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~ 89 (727)
.......+..|+.-.+.++ .++.++..++.. ...+=|+.+.+.+...|..+-..|..+++.+....-.
T Consensus 15 ~~~ye~~I~~LR~qid~~~---~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~------- 84 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLT---NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA------- 84 (119)
T ss_dssp THHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHH-------
Confidence 3333444444444444433 344444444432 2223366666666655655544444444444322110
Q ss_pred CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 90 NRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQI 132 (727)
Q Consensus 90 ~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI 132 (727)
-..|+.++..+...|.-|++-.++ ++.+++.+|
T Consensus 85 -------r~dLE~~iesL~eEl~FLKk~hee---El~eLq~qi 117 (119)
T 3ol1_A 85 -------RLDLERKVESLQEEIAFLKKLHEE---EIQELQAQI 117 (119)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSCC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 123444455555555555555543 444444443
No 7
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=74.20 E-value=1.4e+02 Score=34.81 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=61.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCCCcccccc
Q 004858 74 AELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKN---EIYRSTIYISSKT 150 (727)
Q Consensus 74 ~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~---eL~g~~~~~~~~~ 150 (727)
.+.+.+....|.. ......+.-..+|..+++.|+..|++...--..-...|......|+-||. +|.. +.+...
T Consensus 469 ~ed~~~R~k~g~~-w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~~~~~~l~~---~~p~~~ 544 (704)
T 2xs1_A 469 ATDNDLRAKFKER-WQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNA---AIPSAN 544 (704)
T ss_dssp HHHHHHHHHCTTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHTSCHHHHHH---TSCCCC
T ss_pred HHHHHHHHHhccc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHh---hCccCC
Confidence 3445566667753 11111112234578888888888887765544445556666666655552 1211 111100
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 151 VVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLN 188 (727)
Q Consensus 151 ~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~ 188 (727)
...... ....+..|+..+.++..-+.+|.....+++.
T Consensus 545 ~~~~~~-~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk~ 581 (704)
T 2xs1_A 545 PAKTMQ-GSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581 (704)
T ss_dssp CCGGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011111 2357888888888888888888877666643
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=73.11 E-value=73 Score=31.18 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 004858 98 GNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKS 177 (727)
Q Consensus 98 ~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~ 177 (727)
.+..+++..++..++.+..+..+-..+|.+.+..=..|-.+|..... -+..++..|+..+..|..+..
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~------------~~Ek~~~~L~~~~~~L~~E~e 73 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLV------------QAEQRNRDLQADNQRLKYEVE 73 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999888888888888888888777777777742110 022455555555555555555
Q ss_pred HHHHHHHHHHHH
Q 004858 178 DRMKQVQDHLNT 189 (727)
Q Consensus 178 ~Rl~kv~el~~~ 189 (727)
.=..++....++
T Consensus 74 ~~k~K~~~~~~e 85 (189)
T 2v71_A 74 ALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.35 E-value=1.6e+02 Score=32.81 Aligned_cols=126 Identities=8% Similarity=0.088 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 52 RRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQ 131 (727)
Q Consensus 52 r~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~q 131 (727)
+..|...+....+..+.++..+.++......+.... ......++++.. .+..++.+.+.+..+....+++
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-------~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPK-------DGLARSSDNLNK---VFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------CSSSCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccc-------cccCCHHHHHHH---HHHHHHhhhhhhHHHHHHHHHh
Confidence 445555555556677777778888777777666432 122334444333 3333333444444444445555
Q ss_pred HHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Q 004858 132 IQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKL 203 (727)
Q Consensus 132 I~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~ 203 (727)
++....++.. -.++..+++.+++..++...+=.++...+..+|.+|...+.-.|..
T Consensus 532 ~~~~~~~~~~----------------~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~ 587 (597)
T 3oja_B 532 ADAKQKETED----------------LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587 (597)
T ss_dssp HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hhhhhcchhh----------------HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 5444443310 0134455555555555555555566677777788888888777654
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=62.99 E-value=1.3e+02 Score=30.27 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLE 130 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~ 130 (727)
.+..++.......++-..|+++.+.+...-..|+.- .-..++.++...++.+.++....-.++.++..
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v------------~~~kE~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI------------KSERELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555556666666666666666666421 11223566667777777666666666666666
Q ss_pred HHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 131 QIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLN 188 (727)
Q Consensus 131 qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~ 188 (727)
++..+-..+... ...+..++..+..++.+.+..+..+..-..
T Consensus 119 ~ie~~~~~l~~~----------------~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~ 160 (256)
T 3na7_A 119 EIKRKSEKQEDL----------------KKEMLELEKLALELESLVENEVKNIKETQQ 160 (256)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655321 145566666666666666655554443333
No 11
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=61.16 E-value=2.3 Score=33.17 Aligned_cols=13 Identities=46% Similarity=0.360 Sum_probs=9.8
Q ss_pred cccccchhhhhhh
Q 004858 701 GIDEYSFEERRAG 713 (727)
Q Consensus 701 ~~~~~~~~~~~~~ 713 (727)
|..||||||.||.
T Consensus 23 ~~~E~sfeEllA~ 35 (54)
T 2i3t_B 23 GRLEFSLEEVLAI 35 (54)
T ss_dssp --CBCCHHHHHHH
T ss_pred ccceeeHHHHHHH
Confidence 4689999999974
No 12
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.08 E-value=43 Score=29.54 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccc--cCCCCHHHHHHHHHHHHHHHHHHH
Q 004858 100 LKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVD--ETGLSLRKLEEFHRELHELQKEKS 177 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd--~~dLS~e~LeeL~~~L~~Lq~EK~ 177 (727)
-.+++..++..++.|+.+...-.++...+..++...| |-| +|.+...-|= ...|.....+..+..++.|+.|..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~G--d~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQG--DYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCS--CCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc--ccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999998887778888888877664 434 3433211111 234444555567777777777755
Q ss_pred H
Q 004858 178 D 178 (727)
Q Consensus 178 ~ 178 (727)
.
T Consensus 86 r 86 (100)
T 1go4_E 86 R 86 (100)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.16 E-value=48 Score=45.35 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 004858 156 GLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQK 235 (727)
Q Consensus 156 dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~ 235 (727)
.|-.++|++++..+...+.+...-.+++.++...|..|-..+..--.+.. .+. .........|++-..++..
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~-~L~-------~e~~~~~~kl~rA~~Li~g 2081 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE-QIK-------TESSKVKNKVDRSIALLDN 2081 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHh
Confidence 34456677777777666666665555565555555555444431111000 000 0011245778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 236 LREVKIQRMQKLQDLATTMLELWN 259 (727)
Q Consensus 236 LeeeK~~R~~kl~~L~~~L~eLW~ 259 (727)
|..||....+.+..+..++..|--
T Consensus 2082 L~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2082 LNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHhccH
Confidence 999999999998888887777654
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.11 E-value=14 Score=41.46 Aligned_cols=87 Identities=6% Similarity=0.127 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHH-HHHHHHHHHHHHHH
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLE-EFHRELHELQKEKS 177 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~Le-eL~~~L~~Lq~EK~ 177 (727)
.|.++=..+...|++|+.+.++-.+..++...-...+++.|.... .. ..+.+-...++. +|+.+++.|+.+.+
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq--~q----~~dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDF--SS----ANNRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHH--HH----HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH--Hh----hhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344444788889999998888877777777777777777663221 10 001111112222 56666666666655
Q ss_pred HHHHHHHHHHHHHH
Q 004858 178 DRMKQVQDHLNTLN 191 (727)
Q Consensus 178 ~Rl~kv~el~~~I~ 191 (727)
.-+..+..|++.|.
T Consensus 128 nQlsnIrvLQsnLe 141 (562)
T 3ghg_A 128 EKVQHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444444433
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.57 E-value=1.5e+02 Score=33.15 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004858 159 LRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLRE 238 (727)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~Lee 238 (727)
.+.+.+++..+..|+.+...-.+.+......|......+....+... ...+.|.+.++.+++
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~ 516 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA------------------RSSDNLNKVFTHLKE 516 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSS------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccC------------------CHHHHHHHHHHHHHh
Confidence 35677788888888888888777788888888777776665543221 223556666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 004858 239 VKIQRMQKLQDLATTM 254 (727)
Q Consensus 239 eK~~R~~kl~~L~~~L 254 (727)
..+....+++...+.+
T Consensus 517 ~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 517 RQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhh
Confidence 6666555555555544
No 16
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=53.31 E-value=1.4e+02 Score=27.73 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHH
Q 004858 292 SVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAK 371 (727)
Q Consensus 292 S~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLk 371 (727)
+...++.+..++.++..-=. .|+.+|...+--+..+|..= .+.+.+ --++|...|.-+..|+
T Consensus 52 ~~~ql~~v~kdi~~a~~eL~-~m~~~i~~ekP~WKKiWE~E---------L~~Vce--------EQqfl~~QedL~~DL~ 113 (141)
T 3okq_A 52 AKKKLETVSKDLENAQADVL-KLQEFIDTEKPHWKKTWEAE---------LDKVCE--------EQQFLTLQEELILDLK 113 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---------HHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchhHHHHHHH---------HHHHHH--------HHHHHHHHHHHHHHHH
Confidence 46788888888888765443 58899988888888888632 222221 1456777888899999
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCChhh
Q 004858 372 EEAFSRKDILEKIDKWLAACEEESWLEDYNRDENR 406 (727)
Q Consensus 372 e~~~srK~Ile~Vekw~~l~eE~~~LE~~~kDpnR 406 (727)
+-+..-.+.|.+|+++- ++..++|+|
T Consensus 114 eDL~ka~etf~lVeq~~---------~eq~k~~~~ 139 (141)
T 3okq_A 114 EDLGKALETFDLIKLCC---------EEQEKNPSR 139 (141)
T ss_dssp HHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHhcccC
Confidence 99999999999999883 455677765
No 17
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=52.51 E-value=1.4e+02 Score=28.92 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 122 KEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQV 183 (727)
Q Consensus 122 ~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv 183 (727)
.+.+.+++.++.-+.++|-..-.- .+ .+--..|..+.++|+.....+++.|
T Consensus 105 ~kdlEelr~kL~P~~eEL~~~l~~-----~~------Eelr~~L~Py~eelr~kl~~~~eeL 155 (191)
T 1nfn_A 105 GADMEDVCGRLVQYRGEVQAMLGQ-----ST------EELRVRLASHLRKLRKRLLRDADDL 155 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-----CC------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-----HH------HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 567888888999888888432110 11 1222345555555555555554443
No 18
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.16 E-value=92 Score=27.11 Aligned_cols=30 Identities=3% Similarity=0.190 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 225 TIEQLTTAIQKLREVKIQRMQKLQDLATTM 254 (727)
Q Consensus 225 tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L 254 (727)
.++.....+..++.....-..++..+...+
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~ 94 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELEREL 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444444444444333
No 19
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=51.60 E-value=38 Score=28.82 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 62 RAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQV 128 (727)
Q Consensus 62 k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l 128 (727)
-+.|-..|+.+++++..|-..|..+.|+..+. .....|..++..+...|+.+ .+|+.++.++
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~-~~~~~l~~~l~~~e~eLe~~----~erWeeLe~~ 85 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPH-EQTQKVLADMAAAEQELEQA----FERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 35677889999999999999999876642211 22334555556555555543 4566655544
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.08 E-value=84 Score=38.61 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004858 228 QLTTAIQKLREVKIQRMQKLQDL 250 (727)
Q Consensus 228 ~L~~~l~~LeeeK~~R~~kl~~L 250 (727)
.|+..+..|++++....+++.++
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 21
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.04 E-value=87 Score=27.58 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Q 004858 156 GLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKL 203 (727)
Q Consensus 156 dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~ 203 (727)
.+|.+.+..|+..|+.|+.|...-.+....+-.++-..+ |..+|..
T Consensus 8 ~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd~~~ 53 (100)
T 1go4_E 8 LFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGDYDQ 53 (100)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSCCCT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccCC
Confidence 348899999999999999999888888877777765543 5445543
No 22
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.01 E-value=1.4e+02 Score=25.94 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCH----HHHHHHHHHHHHHHH
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSL----RKLEEFHRELHELQK 174 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~----e~LeeL~~~L~~Lq~ 174 (727)
.+..++..++..+..|+..+.+-..++..+...+..+-. - |.+ -.++++.++. ..++.+...+..++.
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~-~-g~~------CPvCgs~l~~~~~~~~i~~~~~~l~~l~~ 78 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK-A-KGK------CPVCGRELTDEHREELLSKYHLDLNNSKN 78 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-C-SEE------CTTTCCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CCC------CCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666655554433333333333332211 0 111 1234444443 345566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 004858 175 EKSDRMKQVQDHLNTLNSFCSVLG 198 (727)
Q Consensus 175 EK~~Rl~kv~el~~~I~~L~~~Lg 198 (727)
+...=..++..+...+..|-..+.
T Consensus 79 ~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 79 TLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555555555555444443
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.65 E-value=57 Score=36.59 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004858 294 DFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEI 328 (727)
Q Consensus 294 d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeL 328 (727)
..|..++.+|+.-- -....|+..|.+.+.+|..|
T Consensus 117 RrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 117 SRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45666666665544 22344566666666666655
No 24
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=47.44 E-value=91 Score=26.08 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCC-----CcHHHHHHHHHHHHHHHHHHHh
Q 004858 318 VLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTT-----DPANVLEQIELQIAKAKEEAFS 376 (727)
Q Consensus 318 I~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~-----d~eeLLe~~E~EI~rLke~~~s 376 (727)
|+..+.||+-+-+...+|-. +|+ .|..|+. .+..+|++++.||.+||+...+
T Consensus 14 IE~~q~eI~~lL~~AkiSl~-----DyI--miKRGS~DmPe~L~~~~~~QideeV~~LKe~Ida 70 (83)
T 1zke_A 14 IEDSQNEIEMLLKLANLSLG-----DFI--EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 70 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHH-----HHH--HHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhH-----HHh--heeccCccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998843 333 4566654 4567899999999999998643
No 25
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=44.19 E-value=2.7e+02 Score=28.14 Aligned_cols=214 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHH
Q 004858 13 TTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRK------------------------VDEANRCRAHLRQT 68 (727)
Q Consensus 13 ~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~k------------------------Vde~~~~k~~L~qs 68 (727)
..+...+..|..-|+.+..--.+|...|.... ....+++.. |......-..+...
T Consensus 82 ~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~-~~~~f~~~~~e~~~Wl~~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~ 160 (323)
T 3edv_A 82 ATIAEWKDGLNEAWADLLELIDTRTQILAASY-ELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 004858 69 IADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISS 148 (727)
Q Consensus 69 Ia~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~ 148 (727)
|......+..|...-.. +...-+......+...+..+...-+.|...-..|...+.+.. +...+...+..-......
T Consensus 161 l~~~~~~v~~l~~~a~~--L~~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~ 237 (323)
T 3edv_A 161 IQALGTQVRQLQEDAAR--LQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMED 237 (323)
T ss_dssp THHHHHHHHHHHHHHHH--HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_pred ---ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHH
Q 004858 149 ---KTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDT 225 (727)
Q Consensus 149 ---~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~t 225 (727)
.....+..-+...++.+-...+.++.+...|...|..+...-..|... |.+....+ ...
T Consensus 238 ~~~~l~~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~-~~~~~~~i-----------------~~~ 299 (323)
T 3edv_A 238 VIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR-KHYASEEI-----------------KEK 299 (323)
T ss_dssp HHHHHHTCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCTTHHHH-----------------HHH
T ss_pred HHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHH-----------------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004858 226 IEQLTTAIQKLREVKIQRMQKLQ 248 (727)
Q Consensus 226 L~~L~~~l~~LeeeK~~R~~kl~ 248 (727)
|..|......|...=.+|...++
T Consensus 300 l~~L~~~w~~l~~~w~~R~~~L~ 322 (323)
T 3edv_A 300 LLQLTEKRKEMIDKWEDRWEWLR 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.95 E-value=2e+02 Score=26.57 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHhHhCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 004858 13 TTSGSLIEQLQIIWDEVGET------DTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEP 86 (727)
Q Consensus 13 ~~c~s~L~eLq~IWdEIG~~------e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~ 86 (727)
.....+-..|..=..+|.-. ..+|..++..| ++.......- ..-+.|.+.|+++..|+.
T Consensus 28 e~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaAL-----NiadEl~k~~-~~~~~L~~~l~~~~kE~~--------- 92 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYL-----NIADDYFKAK-KMADSLSLDIENKDKEIY--------- 92 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHH---------
Confidence 34455555556666666644 45566665533 3333332211 123344445554444444
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004858 87 PVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIY 140 (727)
Q Consensus 87 p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (727)
.|+.+|...+-+++.+.++..+..+++..++.++.+|-.++.
T Consensus 93 ------------~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 93 ------------DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777888888888888888888888877764
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.15 E-value=48 Score=40.79 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCC
Q 004858 65 LRQTIADYEAELAAICSAMAE 85 (727)
Q Consensus 65 L~qsIa~~~~EL~~L~~eLGe 85 (727)
+......++.++..|-..|++
T Consensus 919 l~~~~~~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQRKIDE 939 (1080)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666655554
No 28
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.20 E-value=63 Score=34.85 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 223 DDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLE 256 (727)
Q Consensus 223 ~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~e 256 (727)
.+..+.|+..+.-|++.-...+..+..|+..|..
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~ 145 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRD 145 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445566666666655555544444444444333
No 29
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.67 E-value=2.5e+02 Score=27.02 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHH
Q 004858 219 RSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDH 298 (727)
Q Consensus 219 ~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~ 298 (727)
.+||++--.++++..++.........+++...+.+|..|+.- ...+...|++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a----------------------------~~~DeakI~a 117 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA----------------------------SSPDTAKINA 117 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------------------------SSCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------------CCCCHHHHHH
Confidence 579999999999999988877777667777777777666642 2244567777
Q ss_pred HHHHHHHHHHHH
Q 004858 299 VEAEVTRLEELK 310 (727)
Q Consensus 299 le~EV~RLeeLK 310 (727)
+..|+..|..-.
T Consensus 118 L~~Ei~~Lr~qL 129 (175)
T 3lay_A 118 VAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=41.62 E-value=2.4e+02 Score=26.98 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 004858 98 GNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKS 177 (727)
Q Consensus 98 ~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~ 177 (727)
..|.+++..+..+|+.=+.-+..+-.-+.+++.+|..|+.+|...-.-.. =.......|+..|..|+++++
T Consensus 65 ~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~---------k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE---------KVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999987777777777789999999999998853211000 001333556666666666666
Q ss_pred HHH
Q 004858 178 DRM 180 (727)
Q Consensus 178 ~Rl 180 (727)
...
T Consensus 136 ~~e 138 (168)
T 3o0z_A 136 NLE 138 (168)
T ss_dssp HHH
T ss_pred hhh
Confidence 554
No 31
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=41.53 E-value=23 Score=27.50 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHH
Q 004858 361 EQIELQIAKAKEEA-FSRKDILEKID 385 (727)
Q Consensus 361 e~~E~EI~rLke~~-~srK~Ile~Ve 385 (727)
..||.||..+...| ..|+||++.|+
T Consensus 24 ~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 24 PMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 45899999999998 68899999986
No 32
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=40.95 E-value=3.1e+02 Score=28.02 Aligned_cols=20 Identities=10% Similarity=0.351 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004858 58 ANRCRAHLRQTIADYEAELA 77 (727)
Q Consensus 58 ~~~~k~~L~qsIa~~~~EL~ 77 (727)
....+.+|...+.+++..|.
T Consensus 13 ~e~lr~~l~~~~eel~~~L~ 32 (273)
T 3s84_A 13 SEKLKEEIGKELEELRARLL 32 (273)
T ss_dssp TTHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 33455555555555555444
No 33
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=40.70 E-value=81 Score=30.28 Aligned_cols=29 Identities=10% Similarity=0.261 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 56 DEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 56 de~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
......+.+|.+.+.+++..+.-...++.
T Consensus 78 ~~~~~Lr~~l~kdlee~r~~l~P~~~e~~ 106 (185)
T 3r2p_A 78 KETEGLRQEMSKDLEEVKAKVQPYLDDFQ 106 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44555778888888888888887777765
No 34
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=38.11 E-value=1.7e+02 Score=28.40 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 52 RRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQ 127 (727)
Q Consensus 52 r~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~ 127 (727)
.+...+....|.++.+.+.+++..|.-...+|...-- ...-.++ ..+.|..++|+.+-.+++++|..
T Consensus 91 ~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~------~~~Eelr---~~L~Py~eelr~kl~~~~eeLr~ 157 (191)
T 1nfn_A 91 ARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLG------QSTEELR---VRLASHLRKLRKRLLRDADDLQK 157 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------CCCHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHH---HHhhhhHHHHHHHHHHHHHHHHH
Confidence 3344556678888999999999999888888853211 1122344 45678889999888888776654
No 35
>2i3s_B Checkpoint serine/threonine-protein kinase; WD40 protein, beta-propeller, glebs motif, mitotic spindle checkpoint, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=37.30 E-value=9.6 Score=27.52 Aligned_cols=11 Identities=36% Similarity=0.344 Sum_probs=9.6
Q ss_pred ccccchhhhhh
Q 004858 702 IDEYSFEERRA 712 (727)
Q Consensus 702 ~~~~~~~~~~~ 712 (727)
..||||||.||
T Consensus 17 ~~E~s~eEllA 27 (36)
T 2i3s_B 17 DEEFNTEEILA 27 (36)
T ss_dssp SCCCCHHHHHH
T ss_pred CcEecHHHHHH
Confidence 47999999997
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.56 E-value=4.2e+02 Score=36.61 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 004858 98 GNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKS 177 (727)
Q Consensus 98 ~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~ 177 (727)
.+++++|+.+...++..+.+..+-..++.++.++++.|-++...... ......++......+|+.=...+..|-.|+.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~--ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR--ETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 68888888888888887777777777788888877777766532100 0000011223345667777777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 004858 178 DRMKQVQDHLNTLNSF 193 (727)
Q Consensus 178 ~Rl~kv~el~~~I~~L 193 (727)
+=.+.+.++..++..|
T Consensus 2088 RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2088 RWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc
Confidence 5555555554444443
No 37
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=35.68 E-value=2.1e+02 Score=25.55 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHhHhCCChhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004858 13 TTSGSLIEQLQIIWDEVGETDTDKDKML---LELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMA 84 (727)
Q Consensus 13 ~~c~s~L~eLq~IWdEIG~~e~eRd~ml---~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLG 84 (727)
+.|..+|..-+.-.|++......++..+ .-|++ =.++|+.=...+...|+++...+..+..++..|...+.
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLka-Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKA-QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566666666677766665555422 22333 33678887778888888899999999988888877654
No 38
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.39 E-value=2.2e+02 Score=30.70 Aligned_cols=40 Identities=8% Similarity=0.087 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 100 LKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
|.++-..+..+++.|+....+-.+...+...-+..+.+.|
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~l 97 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELM 97 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444466777777777766665555555555555555544
No 39
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=32.03 E-value=69 Score=24.52 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 004858 294 DFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRK 331 (727)
Q Consensus 294 d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk 331 (727)
+-|-.++.|+++|+..|...+..|-+..+.+|..+-|.
T Consensus 6 EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD~ 43 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQ 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 45778999999999999999999888888888776553
No 40
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=31.90 E-value=2.4e+02 Score=25.20 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 48 LQVYRRKVDEANRCRAHLRQTIADYEAELAAICS 81 (727)
Q Consensus 48 l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~ 81 (727)
+.-+|+.|+.....+++|.-.|..++..+.++..
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666555555543
No 41
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=31.38 E-value=2.6e+02 Score=24.32 Aligned_cols=48 Identities=17% Similarity=0.380 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHH-HHHHHHHHHHHHHH
Q 004858 64 HLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELR-NILPQLEEMRKRKS 119 (727)
Q Consensus 64 ~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~-~i~~~LEeLrk~K~ 119 (727)
.|+..+..-...+..++.-||-.- ....|+..+. .+.+....|.++-.
T Consensus 10 ~li~t~s~niq~l~k~~~qlGTkr--------D~~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 10 NLIETFAEQSRVLEKECTKIGSKR--------DSKELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSS--------CCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666669999999999642 2446777777 77777777766644
No 42
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.07 E-value=1.9e+02 Score=24.08 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=42.0
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004858 29 VGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAE 85 (727)
Q Consensus 29 IG~~e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe 85 (727)
+.+.+.+-+..|.+||. =+.+..+.|++.|..-.+-.+.|..+..++..|...|..
T Consensus 5 ~~~~~~~le~Ri~~LE~-klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 5 LSPRDQELEARLVELET-RLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp ---CCTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667778885 346778899999999999999999999999999888764
No 43
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.64 E-value=4e+02 Score=25.92 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004858 225 TIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDT 263 (727)
Q Consensus 225 tL~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~i 263 (727)
.|++..-+-..|.+ |..-...++.|+..+..|=.-|.+
T Consensus 142 aiEr~alLE~El~E-Ke~l~~~~QRLkdE~rDLk~El~v 179 (189)
T 2v71_A 142 AIERNAFLESELDE-KESLLVSVQRLKDEARDLRQELAV 179 (189)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCCC----------------
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444432 555555566677777666555544
No 44
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=28.76 E-value=3.7e+02 Score=25.22 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 63 AHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKN 137 (727)
Q Consensus 63 ~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~ 137 (727)
.++-..++.++-+...+..++.-.... .......++++.++.+++. ++.+|......+..+++.+-.
T Consensus 39 ~q~d~elqQLefq~kr~~~e~~~q~~~-----~~~p~~~~qi~~iq~q~~~---ek~~r~e~k~~l~~ql~qv~~ 105 (150)
T 4dci_A 39 ANADQQLAQLEQEGQTVVDQVRRQSAN-----PLDPRVQEQVANIQQQVAG---KRSELEEQKRNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC-----TTCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC-----CCChhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 445555555666666665555421111 0013456667777777764 555555566666666666654
No 45
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.46 E-value=2.9e+02 Score=23.92 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHH
Q 004858 62 RAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKR 117 (727)
Q Consensus 62 k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~ 117 (727)
|...+..|.....|...|...|.+..-..+ + ..-..+..++..|+..|+.|+++
T Consensus 47 rk~~i~~ie~~ldEA~eLl~qMelE~r~~p-~-s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 47 KKKLVRDFDEKQQEANETLAEMEEELRYAP-L-TFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-H-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-H-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555544432110000 0 01124555566666666666543
No 46
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=28.20 E-value=2.7e+02 Score=24.84 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCC--C------------CCCc-----ccc-----CCHH
Q 004858 47 CLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAE-PPVH--N------------RQSD-----QTA-----GNLK 101 (727)
Q Consensus 47 ~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe-~p~~--~------------~~~d-----~~~-----~~Lk 101 (727)
.+..|+..+......+..|...|.++..-+..|-. |.. .+.. + ..++ -+. .++.
T Consensus 9 ~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~-l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~ 87 (133)
T 1fxk_C 9 QLNIYQSQVELIQQQMEAVRATISELEILEKTLSD-IQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFE 87 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHH
Confidence 44567777777777777787777777766665543 331 1110 0 0011 111 1455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 102 EELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139 (727)
Q Consensus 102 eqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (727)
+=.+.+..+++.+......-.+++..+..++..+...|
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54555566666665555555555555555555555544
No 47
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.36 E-value=3.8e+02 Score=28.90 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004858 38 KMLLELEQECLQVYRRKVD--EANRCRAHLRQTIADYEAELAAICSA 82 (727)
Q Consensus 38 ~ml~elEqe~l~vyr~kVd--e~~~~k~~L~qsIa~~~~EL~~L~~e 82 (727)
..+.++.+++-.++.+... ++....+-|.+.|.+.++.+..+...
T Consensus 373 eal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 373 EALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444455555555555433 34455666788888888887776543
No 48
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=26.79 E-value=4.8e+02 Score=25.91 Aligned_cols=222 Identities=9% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 46 ECLQVYRRKVDEANRCRAHLRQTIADYEAELAAI-CSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQ 124 (727)
Q Consensus 46 e~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L-~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~e 124 (727)
+..+.+...|++.+.... .-+..+ -++||. .-...+.+-++.+....+.|+..-.--..+
T Consensus 10 ~v~~~~~~Y~~q~~~sa~----------~~~~~~~~s~l~~---------ql~~~~~d~~~~l~~~~~~l~~~l~p~~ee 70 (243)
T 2a01_A 10 RVKDLATVYVDVLKDSGR----------DYVSQFEGSALGK---------QLNLKLLDNWDSVTSTFSKLREQLGPVTQE 70 (243)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHC---------SSCCSSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHhCCcHHH
Q ss_pred H-HHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCChh
Q 004858 125 F-VQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMK-QVQDHLNTLNSFCSVLGMDFK 202 (727)
Q Consensus 125 f-~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~-kv~el~~~I~~L~~~Lg~d~~ 202 (727)
+ ..+......+...|.... ++++..|.-+..+...++. .+.+++..+.-+...|..-..
T Consensus 71 ~~~~l~~~~~~lr~~l~kd~-------------------ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~~~ 131 (243)
T 2a01_A 71 FWDNLEKETEGLRQEMSKDL-------------------EEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGAR 131 (243)
T ss_dssp HHHHHHHHHHHHHHTSSCCS-------------------SCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC-CCHHHHHHHHhhhhcccc
Q 004858 203 LTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQD-LATTMLELWNLMD-TPIEEQQMFQNVTCNIAA 280 (727)
Q Consensus 203 ~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~~-L~~~L~eLW~~L~-ip~EEr~~F~~~~~~i~~ 280 (727)
..+.++...| ..+..+.=++|...++.|+..-.-..+.+.. +...+.+|-..+. .-.+.+..+..
T Consensus 132 ~~~eel~~~L------~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~------- 198 (243)
T 2a01_A 132 QKLHELQEKL------SPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATE------- 198 (243)
T ss_dssp HHHHHHCCSC------CSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHH-------
T ss_pred hhHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-------
Q ss_pred chhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 004858 281 SEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKN 332 (727)
Q Consensus 281 S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLWdk~ 332 (727)
.++.++.-+.-.-+-=+.++.-+++.++..|..+|+.+
T Consensus 199 --------------~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~e~~ 236 (243)
T 2a01_A 199 --------------HLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEY 236 (243)
T ss_dssp --------------HHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 49
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.17 E-value=1.2e+02 Score=23.56 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004858 111 LEEMRKRKSDRKEQFVQVLEQIQMIKNEIY 140 (727)
Q Consensus 111 LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (727)
+|.|+.+.++-..++..|..+++.+|+.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444556667777777777763
No 50
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.69 E-value=2.9e+02 Score=23.03 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRS 142 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~ 142 (727)
.|..+|..++..++....++.+-+.-=..+-.+|..++.-|.|.
T Consensus 37 ~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEGE 80 (84)
T 1gk4_A 37 RLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGE 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 34555555555555555555555555556667777787766553
No 51
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=25.38 E-value=3.3e+02 Score=23.46 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHHHHhH
Q 004858 1 MSNHNDPFLQEETTSGSLIEQLQIIWDE 28 (727)
Q Consensus 1 ~~~~~~~~~~~~~~c~s~L~eLq~IWdE 28 (727)
||. |||-++..-|.+.|..|+.+-..
T Consensus 3 ~s~--DPF~~V~~D~~~ql~~l~~~~~~ 28 (95)
T 2c5k_T 3 NSE--DPFQQVVKDTKEQLNRINNYITR 28 (95)
T ss_dssp --C--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 455 99999999999999999999755
No 52
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=25.12 E-value=1.3e+02 Score=27.42 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhHHHHH-HHHHcCChhhhhcCCC
Q 004858 378 KDILEKIDKWLAACEEESW-LEDYNRDENRYNAGRG 412 (727)
Q Consensus 378 K~Ile~Vekw~~l~eE~~~-LE~~~kDpnR~~nrrG 412 (727)
.+|=.+|.||..+|.+..| |-...++ |++..||
T Consensus 39 ~eL~~LI~KWr~asq~aaeeLf~~~~~--rv~rMGG 72 (122)
T 3viq_A 39 KDLQTLIQKWKNAAQQAAEVLFKPMAE--RIRLAGG 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccc
Confidence 5788999999999998777 4444443 6765455
No 53
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.03 E-value=4.5e+02 Score=25.16 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 004858 155 TGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQ 234 (727)
Q Consensus 155 ~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS~~tL~~L~~~l~ 234 (727)
.+||.++-..++...++.+.+.....+++...+.++..|+.- ...+...|.+|...+.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a----------------------~~~DeakI~aL~~Ei~ 123 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA----------------------SSPDTAKINAVAKEME 123 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------------------SSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------CCCCHHHHHHHHHHHH
Confidence 589999999999999988888777666666666666554321 1234567777777777
Q ss_pred HHHHHHH
Q 004858 235 KLREVKI 241 (727)
Q Consensus 235 ~LeeeK~ 241 (727)
.|+....
T Consensus 124 ~Lr~qL~ 130 (175)
T 3lay_A 124 SLGQKLD 130 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7755433
No 54
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=24.80 E-value=7.1e+02 Score=27.21 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 004858 64 HLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRST 143 (727)
Q Consensus 64 ~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~ 143 (727)
.+...|+.....+..|...-+.. ..+..+....+.|...-..|...+..+..=+...-+++.=-.
T Consensus 46 ~lE~eI~a~~~~v~~l~~~a~~~---------------~~~~~L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~Wi~ 110 (450)
T 3r6n_A 46 GIHNSIGDYRWQLDKIKADLREK---------------SAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWIN 110 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888887764421 124556666666766666676666544332222222221000
Q ss_pred Cccccccccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCCCCCCC
Q 004858 144 IYISSKTVVD-ETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSIS 222 (727)
Q Consensus 144 ~~~~~~~~vd-~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~~~~LS 222 (727)
+-.......| +.+++ .+..++...+.|+.|...|...|..+...=..|.. -|.+....|
T Consensus 111 EKe~~~~s~d~gd~l~--dv~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~-~~Hpas~~I----------------- 170 (450)
T 3r6n_A 111 DCEEEELLYDWSDKNT--NIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVL-NQHPASDKI----------------- 170 (450)
T ss_dssp HHHHHHHSCCCSTTCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCTTHHHH-----------------
T ss_pred HHHHHHhccccCcChh--hHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH-cCCCCchHH-----------------
Confidence 0000000011 01111 12345566778888888888888777776555432 233322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 223 DDTIEQLTTAIQKLREVKIQRMQKLQD 249 (727)
Q Consensus 223 ~~tL~~L~~~l~~LeeeK~~R~~kl~~ 249 (727)
...++.|+..-+.|...-..|...+++
T Consensus 171 ~~r~~~L~~~W~~L~~l~~~R~~~L~~ 197 (450)
T 3r6n_A 171 EAYMDTLQTQWSWILQITKCIDVHLKE 197 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245666777666777666666666654
No 55
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.94 E-value=3.4e+02 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=9.3
Q ss_pred CChhHHHHHHHHHHH
Q 004858 31 ETDTDKDKMLLELEQ 45 (727)
Q Consensus 31 ~~e~eRd~ml~elEq 45 (727)
.+-++|...+.+++.
T Consensus 27 ~~ge~Rk~~i~~ie~ 41 (97)
T 3onj_A 27 QPLSQRNTTLKHVEQ 41 (97)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHH
Confidence 455667766666654
No 56
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.05 E-value=2e+02 Score=24.29 Aligned_cols=75 Identities=13% Similarity=0.284 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 51 YRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLE 130 (727)
Q Consensus 51 yr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~ 130 (727)
+|+.|+.+...++++.-.|..++..+.++..-.... . ..-....-.+..++..|+.+-..|.+ |..
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E-~------~~R~~~E~d~~~LrkdvD~a~l~r~d-------LE~ 70 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE-M------LQREEAENTLQSFRQDVDNASLARLD-------LER 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHTTHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHhhHHHHHHHHHH-------HHH
Confidence 466677777777777777777776666665443210 0 00123344455666666666555544 444
Q ss_pred HHHHHHHHh
Q 004858 131 QIQMIKNEI 139 (727)
Q Consensus 131 qI~~Lc~eL 139 (727)
+++.|..+|
T Consensus 71 kvesL~eEl 79 (86)
T 3swk_A 71 KVESLQEEI 79 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 57
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=20.99 E-value=4.7e+02 Score=23.69 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=37.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004858 288 RNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEIC 329 (727)
Q Consensus 288 ~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~ELeeLW 329 (727)
.+.+|.|....++.+|+.|..-....+.+++..+-.||.+..
T Consensus 73 dkeISEDe~kr~e~eIQKLTDkyIkkID~ll~~KEKEI~~~~ 114 (121)
T 3lf9_A 73 DKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKELMEVL 114 (121)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999998888887653
No 58
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.71 E-value=4.5e+02 Score=23.66 Aligned_cols=38 Identities=11% Similarity=0.241 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 99 NLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIK 136 (727)
Q Consensus 99 ~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (727)
.|+.++..+...|++-+..+..-+.+...+..+...+-
T Consensus 44 ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554555555666655543
No 59
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=20.38 E-value=93 Score=32.48 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=33.7
Q ss_pred CHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004858 264 PIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELV 318 (727)
Q Consensus 264 p~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI 318 (727)
|.+||+.|......+ +..|+.++.+++.|+++|...|.+++
T Consensus 377 pl~eQ~~I~~~l~~l--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 417 (425)
T 1yf2_A 377 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 417 (425)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 568999998876543 36889999999999999999888875
Done!