Query 004858
Match_columns 727
No_of_seqs 265 out of 539
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 08:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004858.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004858hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zkea1 a.30.6.1 (A:1-79) Hypo 40.0 75 0.0054 24.4 8.6 52 318-376 12-68 (79)
2 d1yf2a2 d.287.1.2 (A:221-425) 34.6 20 0.0014 31.0 5.0 41 264-318 157-197 (205)
3 d1ydxa2 d.287.1.2 (A:194-374) 29.1 26 0.0019 30.0 4.8 41 264-318 137-177 (181)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 27.4 1.5E+02 0.011 24.2 11.0 39 157-195 92-130 (133)
5 d1ydxa1 d.287.1.2 (A:1-193) Bi 27.1 27 0.002 30.1 4.6 40 265-318 143-182 (193)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 25.6 90 0.0065 25.8 7.6 32 48-79 10-41 (133)
7 d1yf2a1 d.287.1.2 (A:1-220) Bi 22.1 51 0.0037 29.0 5.5 42 264-319 167-208 (220)
8 d1ykhb1 a.252.1.1 (B:2-130) RN 21.5 2.1E+02 0.015 23.9 9.1 65 123-196 63-127 (129)
9 d1gm5a1 a.24.21.1 (A:7-105) Re 18.2 29 0.0021 28.3 2.3 47 372-439 45-91 (99)
10 d1seta1 a.2.7.1 (A:1-110) Sery 17.9 2E+02 0.015 22.8 8.1 70 53-128 28-97 (110)
No 1
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=40.00 E-value=75 Score=24.37 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhHHHHhhhcCCC-----CcHHHHHHHHHHHHHHHHHHHh
Q 004858 318 VLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTT-----DPANVLEQIELQIAKAKEEAFS 376 (727)
Q Consensus 318 I~k~R~ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~-----d~eeLLe~~E~EI~rLke~~~s 376 (727)
|++.|.+|+-+-+..-+|-. +|+ .|..|+. .+..+|++++.||.+||+...+
T Consensus 12 IE~~q~eI~~lL~~AkiS~v-----DyI--mIKRGS~DmPe~l~~~~l~qid~ev~kLK~~Ida 68 (79)
T d1zkea1 12 IEDSQNEIEMLLKLANLSLG-----DFI--EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHTCCHH-----HHH--HHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhh-----Hhh--eeecCcccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998888743 333 3556654 4577899999999999998754
No 2
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=34.63 E-value=20 Score=31.01 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=32.4
Q ss_pred CHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004858 264 PIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELV 318 (727)
Q Consensus 264 p~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI 318 (727)
|.+||+.|......+ ++.|+.++..++.|+++|...|..++
T Consensus 157 ~~~eQ~~I~~~l~~i--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 197 (205)
T d1yf2a2 157 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 197 (205)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888887765543 46889999999999999998888775
No 3
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=29.13 E-value=26 Score=30.05 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=33.6
Q ss_pred CHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004858 264 PIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELV 318 (727)
Q Consensus 264 p~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI 318 (727)
|.++|+.|.+....+ ++.|+.++.+++.|+++|...|++++
T Consensus 137 ~l~eQ~~I~~~l~~~--------------d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 137 SFQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888998876654 47899999999999999998887763
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.40 E-value=1.5e+02 Score=24.17 Aligned_cols=39 Identities=5% Similarity=0.009 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 157 LSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCS 195 (727)
Q Consensus 157 LS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~ 195 (727)
.-.++++.++..++.|+++......++..+...+.++..
T Consensus 92 ~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~ 130 (133)
T d1fxkc_ 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666666666666666666544
No 5
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=27.07 E-value=27 Score=30.14 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004858 265 IEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELV 318 (727)
Q Consensus 265 ~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI 318 (727)
.+||+.+..+...+ ++.|+.++.+++.|+++|...|++++
T Consensus 143 ~~eQ~~I~~~l~~l--------------d~~i~~~~~~i~~l~~~~~~ll~~lf 182 (193)
T d1ydxa1 143 KNEQHAIANTLSVF--------------DERLENLASLIEINRKLRDEYAHKLF 182 (193)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888765543 47899999999999999999999986
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.61 E-value=90 Score=25.78 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 48 LQVYRRKVDEANRCRAHLRQTIADYEAELAAI 79 (727)
Q Consensus 48 l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L 79 (727)
++.|+..++.....-..+...++++..-++.|
T Consensus 10 ~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L 41 (133)
T d1fxkc_ 10 LNIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666766666666544444
No 7
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=22.15 E-value=51 Score=29.04 Aligned_cols=42 Identities=29% Similarity=0.504 Sum_probs=33.8
Q ss_pred CHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004858 264 PIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVL 319 (727)
Q Consensus 264 p~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~ 319 (727)
|.++|+.|......+ ++.|+..+.+++.|+++|...|.+++.
T Consensus 167 p~~eQ~~I~~~l~~i--------------~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 167 PLEEQKQIAKILTKI--------------DEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 568888888766544 368888999999999999988888864
No 8
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.51 E-value=2.1e+02 Score=23.93 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 123 EQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSV 196 (727)
Q Consensus 123 ~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~ 196 (727)
..|..-..+|..|.+.| |..+. +...-.++|.+|..+++....++.+-+.+-..+...|..+...
T Consensus 63 ~dii~kakqId~LI~sL---P~~~~------see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~ 127 (129)
T d1ykhb1 63 TDIILKTRQINKLIDSL---PGVDV------SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHS---TTTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHhC---CCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677777766 21110 1123457889999999999999999888888888888887654
No 9
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.18 E-value=29 Score=28.30 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=32.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCChhhhhcCCCCchhchHHHHHHHHhhhhhHHHHHHHH
Q 004858 372 EEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLAS 439 (727)
Q Consensus 372 e~~~srK~Ile~Vekw~~l~eE~~~LE~~~kDpnR~~nrrGah~~LlrEEK~Rk~v~KLPklee~L~~ 439 (727)
+....+.+|++++.++-+-.. -=+| +.+|++++||++.|.|++.++.
T Consensus 45 DpLlen~el~~kLqeF~~Yi~------------------~~~~---Lp~eR~~kRvk~~~gMIerfR~ 91 (99)
T d1gm5a1 45 DPLLENKDLEEKLQAFLDYVK------------------EIPN---LPEARKRYRIQKSLEMIEKLRS 91 (99)
T ss_dssp CGGGGCHHHHHHHHHHHHHHT------------------TSSS---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhcCHHHHHHHHHHHHHHH------------------Hhcc---CCHHHHHHHHhccHHHHHHHHH
Confidence 555666777777776632221 1122 4789999999999999998664
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.91 E-value=2e+02 Score=22.75 Aligned_cols=70 Identities=7% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004858 53 RKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQV 128 (727)
Q Consensus 53 ~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l 128 (727)
..|-+....+..++..+..++++-..+..++|-..- .....|.++...+...+..+..+..+-..++.++
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~------~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP------EEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!