Query 004860
Match_columns 727
No_of_seqs 400 out of 3427
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 1.9E-92 6.5E-97 872.9 23.0 632 13-718 301-959 (1304)
2 1pg4_A Acetyl-COA synthetase; 100.0 2.9E-86 9.9E-91 762.7 56.3 581 120-721 23-623 (652)
3 1ry2_A Acetyl-coenzyme A synth 100.0 4E-86 1.4E-90 761.7 54.2 588 114-720 19-638 (663)
4 3etc_A AMP-binding protein; ad 100.0 2.3E-80 8E-85 703.8 48.3 521 165-719 47-579 (580)
5 3ni2_A 4-coumarate:COA ligase; 100.0 1E-79 3.5E-84 694.1 47.3 489 185-719 31-535 (536)
6 4dg8_A PA1221; ANL superfamily 100.0 2.4E-80 8.2E-85 707.5 42.6 466 185-720 36-514 (620)
7 3g7s_A Long-chain-fatty-acid-- 100.0 3.5E-80 1.2E-84 699.9 42.3 501 186-724 29-547 (549)
8 4fuq_A Malonyl COA synthetase; 100.0 6.8E-79 2.3E-83 681.5 47.5 485 186-721 10-502 (503)
9 3e7w_A D-alanine--poly(phospho 100.0 1.3E-78 4.5E-83 681.2 47.3 483 186-722 11-506 (511)
10 1mdb_A 2,3-dihydroxybenzoate-A 100.0 5.1E-79 1.7E-83 688.5 42.1 490 186-723 35-535 (539)
11 3fce_A D-alanine--poly(phospho 100.0 5.2E-79 1.8E-83 685.0 41.4 487 186-724 11-509 (512)
12 3r44_A Fatty acyl COA syntheta 100.0 3.4E-79 1.2E-83 686.3 38.3 483 185-722 25-516 (517)
13 3rg2_A Enterobactin synthase c 100.0 2.5E-77 8.7E-82 685.3 50.1 485 190-721 39-536 (617)
14 3c5e_A Acyl-coenzyme A synthet 100.0 1.1E-76 3.9E-81 672.6 51.9 514 164-720 28-563 (570)
15 2d1s_A Luciferase, luciferin 4 100.0 3.7E-77 1.3E-81 674.2 47.3 491 187-723 37-547 (548)
16 1amu_A GRSA, gramicidin synthe 100.0 8.2E-78 2.8E-82 680.9 41.4 467 186-717 49-527 (563)
17 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.5E-77 2.2E-81 666.3 48.2 474 186-718 12-503 (504)
18 3l8c_A D-alanine--poly(phospho 100.0 1.5E-77 5E-82 675.0 40.7 488 186-725 14-518 (521)
19 3tsy_A Fusion protein 4-coumar 100.0 7.3E-78 2.5E-82 725.2 40.9 559 114-722 11-585 (979)
20 4gr5_A Non-ribosomal peptide s 100.0 1.7E-78 5.9E-83 688.8 33.3 471 186-716 85-568 (570)
21 3o83_A Peptide arylation enzym 100.0 5.2E-78 1.8E-82 681.0 33.3 491 185-720 39-541 (544)
22 1v25_A Long-chain-fatty-acid-C 100.0 1.3E-77 4.4E-82 677.3 36.2 491 186-722 28-539 (541)
23 3rix_A Luciferase, luciferin 4 100.0 1.7E-77 5.9E-82 678.1 32.0 497 187-723 31-545 (550)
24 2v7b_A Benzoate-coenzyme A lig 100.0 1.5E-75 5.2E-80 659.5 47.6 495 173-715 23-528 (529)
25 3ivr_A Putative long-chain-fat 100.0 2.5E-77 8.5E-82 670.8 32.6 483 186-724 16-506 (509)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 2.2E-75 7.6E-80 653.0 36.9 459 185-715 31-504 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 7.5E-74 2.5E-78 641.6 40.9 483 185-720 10-498 (501)
28 3ite_A SIDN siderophore synthe 100.0 7.8E-74 2.7E-78 650.4 30.7 487 186-720 30-544 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 1.8E-72 6.2E-77 643.8 36.9 492 186-720 21-568 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 7.1E-70 2.4E-74 620.8 41.1 482 186-724 31-568 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 5.8E-57 2E-61 502.4 25.4 383 186-610 34-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.5E-56 1.2E-60 474.1 23.7 317 355-720 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.3E-49 4.4E-54 437.0 24.7 325 352-711 81-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 9.9E-49 3.4E-53 430.8 23.5 331 352-712 88-437 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 3.5E-48 1.2E-52 425.7 24.4 330 352-712 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 5E-32 1.7E-36 290.2 16.1 237 353-620 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 8.4E-16 2.9E-20 132.5 7.7 96 609-710 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 2.7E-15 9.2E-20 129.0 8.8 96 609-711 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.9 2.5E-08 8.7E-13 109.5 16.1 42 591-632 412-457 (609)
40 4eql_A 4-substituted benzoates 98.8 4.5E-08 1.5E-12 107.5 15.3 134 470-634 296-447 (581)
41 4epl_A Jasmonic acid-amido syn 98.8 1.6E-07 5.6E-12 102.7 18.2 162 470-663 301-488 (581)
42 2jgp_A Tyrocidine synthetase 3 98.4 2.8E-09 9.5E-14 118.9 -9.9 132 13-152 374-515 (520)
43 4hvm_A Tlmii; PSI-biology, mid 97.9 2.6E-07 9E-12 102.1 -6.9 130 15-154 301-468 (493)
44 1l5a_A Amide synthase, VIBH; n 97.7 2.9E-07 1E-11 99.9 -9.9 134 13-157 278-421 (436)
45 2xhg_A Tyrocidine synthetase A 95.8 0.00019 6.5E-09 78.3 -7.1 123 14-147 310-457 (466)
46 1q9j_A PAPA5, polyketide synth 89.7 0.0059 2E-07 65.3 -8.1 107 24-147 298-417 (422)
47 2y27_A Phenylacetate-coenzyme 85.7 4.5 0.00015 42.8 11.6 100 188-289 87-191 (437)
48 2y4o_A Phenylacetate-coenzyme 84.5 5.4 0.00019 42.2 11.7 100 188-289 89-193 (443)
49 3qov_A Phenylacetate-coenzyme 83.8 5.8 0.0002 41.9 11.4 97 191-289 86-187 (436)
50 3rix_A Luciferase, luciferin 4 78.7 4.2 0.00015 44.6 8.3 100 355-459 34-136 (550)
51 3g7s_A Long-chain-fatty-acid-- 78.5 11 0.00036 41.3 11.5 104 354-460 32-139 (549)
52 1v25_A Long-chain-fatty-acid-C 77.6 12 0.00041 40.8 11.5 100 354-459 31-133 (541)
53 3ivr_A Putative long-chain-fat 76.4 7.9 0.00027 41.8 9.6 95 354-458 19-116 (509)
54 1t5h_X 4-chlorobenzoyl COA lig 74.6 14 0.00048 39.7 11.0 98 354-459 15-117 (504)
55 3ni2_A 4-coumarate:COA ligase; 74.5 8.7 0.0003 41.9 9.3 97 354-458 35-134 (536)
56 2v7b_A Benzoate-coenzyme A lig 72.9 11 0.00039 40.8 9.8 95 354-458 36-133 (529)
57 3c5e_A Acyl-coenzyme A synthet 72.7 16 0.00054 40.1 10.9 101 354-459 56-160 (570)
58 3t5a_A Long-chain-fatty-acid-- 71.3 19 0.00065 38.3 11.0 105 354-462 37-149 (480)
59 3r44_A Fatty acyl COA syntheta 71.3 16 0.00056 39.4 10.5 95 354-456 29-126 (517)
60 1amu_A GRSA, gramicidin synthe 70.9 17 0.0006 39.7 10.7 96 354-459 52-150 (563)
61 3etc_A AMP-binding protein; ad 70.6 16 0.00055 40.2 10.3 95 354-453 69-166 (580)
62 1ry2_A Acetyl-coenzyme A synth 70.4 19 0.00063 40.5 11.0 97 354-454 95-195 (663)
63 4fuq_A Malonyl COA synthetase; 67.0 15 0.00053 39.5 9.1 80 375-455 28-110 (503)
64 1pg4_A Acetyl-COA synthetase; 66.3 25 0.00084 39.3 10.9 96 354-453 89-187 (652)
65 4gr5_A Non-ribosomal peptide s 66.3 22 0.00076 38.9 10.4 92 354-455 88-182 (570)
66 3o83_A Peptide arylation enzym 66.2 21 0.00072 38.8 10.1 90 354-453 43-135 (544)
67 3kxw_A Saframycin MX1 syntheta 64.1 33 0.0011 37.6 11.3 101 354-460 24-130 (590)
68 3hgu_A EHPF; phenazine, antibi 63.2 27 0.00092 35.6 9.7 99 189-290 89-215 (369)
69 1mdb_A 2,3-dihydroxybenzoate-A 60.6 27 0.00091 37.9 9.6 90 354-453 38-130 (539)
70 2d1s_A Luciferase, luciferin 4 60.4 23 0.00079 38.6 9.0 84 374-458 51-137 (548)
71 3l8c_A D-alanine--poly(phospho 58.7 27 0.00093 37.6 9.2 90 354-453 17-109 (521)
72 3fce_A D-alanine--poly(phospho 56.0 31 0.001 37.1 9.0 89 354-452 14-105 (512)
73 3tsy_A Fusion protein 4-coumar 54.7 30 0.001 40.8 9.3 95 354-456 74-171 (979)
74 3ipl_A 2-succinylbenzoate--COA 51.4 34 0.0012 36.5 8.4 90 354-453 14-103 (501)
75 4dg8_A PA1221; ANL superfamily 47.7 49 0.0017 36.6 9.1 89 354-452 40-131 (620)
76 3ite_A SIDN siderophore synthe 47.2 78 0.0027 34.3 10.6 97 354-453 33-134 (562)
77 3ezx_A MMCP 1, monomethylamine 44.7 1.7E+02 0.0057 27.1 10.9 90 398-489 93-193 (215)
78 3rg2_A Enterobactin synthase c 41.3 61 0.0021 35.8 8.6 89 355-453 39-130 (617)
79 3gqw_A Fatty acid AMP ligase; 40.7 73 0.0025 34.5 9.1 86 373-459 47-142 (576)
80 1yj7_A ESCJ; mixed alpha/beta, 39.7 96 0.0033 27.7 7.9 71 624-698 92-163 (171)
81 3e7w_A D-alanine--poly(phospho 38.8 77 0.0026 33.8 8.7 89 354-452 14-106 (511)
82 3nyq_A Malonyl-COA ligase; A/B 33.8 83 0.0028 33.6 7.9 78 374-454 47-124 (505)
83 4h1h_A LMO1638 protein; MCCF-l 33.3 1.5E+02 0.0052 29.5 9.2 70 230-299 9-97 (327)
84 2vsq_A Surfactin synthetase su 32.1 96 0.0033 37.8 8.9 92 354-455 477-571 (1304)
85 3vc3_A Beta-cyanoalnine syntha 30.8 1.4E+02 0.0047 30.1 8.5 69 220-288 72-141 (344)
86 3tbh_A O-acetyl serine sulfhyd 29.2 1.9E+02 0.0063 28.9 9.1 60 230-289 68-127 (334)
87 3sr3_A Microcin immunity prote 27.9 2.1E+02 0.0073 28.6 9.2 69 230-299 10-98 (336)
88 4e5s_A MCCFLIKE protein (BA_56 27.7 2E+02 0.007 28.6 9.0 69 230-299 9-97 (331)
89 3tla_A MCCF; serine protease, 27.4 2E+02 0.0069 29.2 9.0 70 230-299 40-128 (371)
90 2zzt_A Putative uncharacterize 25.3 2.5E+02 0.0086 22.4 7.6 63 623-687 11-74 (107)
91 3ri6_A O-acetylhomoserine sulf 24.3 3.7E+02 0.013 27.7 10.7 57 230-288 118-175 (430)
92 2cvi_A 75AA long hypothetical 21.1 1.5E+02 0.0053 22.2 5.3 46 624-681 15-60 (83)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.9e-92 Score=872.91 Aligned_cols=632 Identities=16% Similarity=0.167 Sum_probs=507.1
Q ss_pred HHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC---------
Q 004860 13 LMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--------- 82 (727)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~--------- 82 (727)
++-+++..++..+|.++|+++.+. +++++||++||++ |++.++ ..|+ |++|+++++.....
T Consensus 301 tlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~------~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 371 (1304)
T 2vsq_A 301 VVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD------QPKL--IDHIIVFENYPLQDAKNEESSEN 371 (1304)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS------CSSS--CCCEEEECSSCHHHHSCCCHHHH
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC------CCcc--cceeEEEeecccccccccccccC
Confidence 445566667777888888888888 9999999999999 999885 2344 66777766532100
Q ss_pred CccccCCh-hhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCC
Q 004860 83 PLYWFPSL-DQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRT 158 (727)
Q Consensus 83 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~ 158 (727)
.....+.. ....+||+++.+.. ++++...+ |++ ++|++.+++++.++|.++|+++..+++.+...+ ++..
T Consensus 372 g~~~~~~~~~~~~~~dL~l~~~~-~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~ 445 (1304)
T 2vsq_A 372 GFDMVDVHVFEKSNYDLNLMASP-GDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDR 445 (1304)
T ss_dssp SEEEEEEEECCCCCSSEEEEEEC-SSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHH
T ss_pred CceeEeeecccccccCeEEEEec-CCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHH
Confidence 11010000 13467788776543 45677777 998 999999999999999999999988887776654 3433
Q ss_pred CCCCCCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCE
Q 004860 159 DKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235 (727)
Q Consensus 159 ~~~~~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~ 235 (727)
++...+..|+.+...... .+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++
T Consensus 446 e~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~ 516 (1304)
T 2vsq_A 446 EREFLLTGLNPPAQAHET-KPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSV 516 (1304)
T ss_dssp HHHHHHTTTSCCCCCCCC-CCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHhcCCCCCCCCC-CCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCE
Confidence 333345567765443322 23332 335689999999998877 999999999999999999999 999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEc
Q 004860 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP 315 (727)
Q Consensus 236 Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 315 (727)
|+|+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++. ....+++.
T Consensus 517 V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~--------~~~~~~~~ 588 (1304)
T 2vsq_A 517 VALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY--------TGTTLFID 588 (1304)
T ss_dssp EEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCC--------CSEEEESS
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCC--------CCcEEEec
Confidence 9999999999999999999999999999999999999999999999999998754321111110 01111111
Q ss_pred CCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCC
Q 004860 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (727)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~ 395 (727)
. . ... ... ...+.....++++|||+|||||||+||||+++|+++++. .+....++++
T Consensus 589 ~------------~---~~~-~~~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~ 645 (1304)
T 2vsq_A 589 D------------Q---TRF-EEQ------ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFS 645 (1304)
T ss_dssp C------------G---GGG-GSC------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCC
T ss_pred c------------c---ccc-ccc------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCC
Confidence 0 0 000 000 011123456899999999999999999999999999877 5566778999
Q ss_pred CCCEEEEecccccccchHHhHHhhhcCcEEEEecC--CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccce
Q 004860 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (727)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~L 473 (727)
++|+++++++++|+.+.+++|.+|+.|+++++.+. ..++..+.+.|++++||++.++|++++.|.+.. ...+++|
T Consensus 646 ~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~l 722 (1304)
T 2vsq_A 646 DQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGL 722 (1304)
T ss_dssp TTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCc
Confidence 99999999999999999999999999999999875 347889999999999999999999999998753 2246899
Q ss_pred eEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCC---CCccccccccCCCCceEEEECCCCCcCCCCC
Q 004860 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550 (727)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~ 550 (727)
|.+++|||+++++..+.+.+.+++++++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|+
T Consensus 723 r~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~ 802 (1304)
T 2vsq_A 723 RCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGA 802 (1304)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred cEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCC
Confidence 9999999999999988888777778999999999999765543221 2234568999999999999999999999999
Q ss_pred CeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechH
Q 004860 551 PCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625 (727)
Q Consensus 551 ~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~ 625 (727)
. |||+| +.||++ +++.|+++|..+|+.+|.+||||||+|+|++||+|+|+||+|||||++|+||+|+
T Consensus 803 ~--GEl~i~G~~v~~GY~~------~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~ 874 (1304)
T 2vsq_A 803 V--GELCISGMGVSKGYVN------RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELE 874 (1304)
T ss_dssp C--EEEEEEETTCCCCBTT------CHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHH
T ss_pred c--eEEEEeccccCccccC------CcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHH
Confidence 6 99998 467776 4458899999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCC
Q 004860 626 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS 705 (727)
Q Consensus 626 eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~ 705 (727)
|||++|. +||+|.+|+|++.++...+ +.++|||+.+. ..+.++++ ++|+++||.||+|+.|+++++||+|+|
T Consensus 875 eIE~~l~-~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~--~~~~~~l~----~~l~~~Lp~ymvP~~~~~l~~lP~t~~ 946 (1304)
T 2vsq_A 875 EIEKQLQ-EYPGVKDAVVVADRHESGD-ASINAYLVNRT--QLSAEDVK----AHLKKQLPAYMVPQTFTFLDELPLTTN 946 (1304)
T ss_dssp HHHHHHH-HSSSCCEEEEEEECCSSSC-CEEEEEEECSS--SSCHHHHH----HHHHHHSCGGGSCSEEEEESCCCCCSS
T ss_pred HHHHHHH-hCCCCceEEEEEEecCCCC-EEEEEEEeCCC--CCCHHHHH----HHHHHhChHhhhccEEEEecccCCCCC
Confidence 9999995 9999999999999887777 89999999765 34545554 457788999999999999999999999
Q ss_pred chhhHHHHHHHHh
Q 004860 706 NKLLRRVLRDQIK 718 (727)
Q Consensus 706 GKvdR~~L~~~~~ 718 (727)
|||||++|++...
T Consensus 947 GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 947 GKVNKRLLPKPDQ 959 (1304)
T ss_dssp CSSCCSCCCCCCG
T ss_pred cccCHhhcCCcch
Confidence 9999999986543
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.9e-86 Score=762.66 Aligned_cols=581 Identities=25% Similarity=0.374 Sum_probs=472.1
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCC-CCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEe
Q 004860 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (727)
Q Consensus 120 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (727)
+|..+.+++++++..||..+++. +.|.+++.++++.... ..+..+||.++..|.+.+++++++ +++||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEE
Confidence 45778899999999999999885 5788888888754321 133568999999999999998765 578999999986
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHH
Q 004860 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (727)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~ 277 (727)
+. ..+..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred cC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 43 123346899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEeecccccCCccccchHHHhhh---CC----CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCC
Q 004860 278 VSKAKGIFTQDFILRGGRKFPLYSKVLGA---AP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (727)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (727)
++++++||+++...+.++.++....+.+. .+ ..++++......... ......+|++++..... ....
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCc
Confidence 99999999998877666655544443322 21 234444432211111 11234568877654321 1122
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHH-hhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEEe
Q 004860 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (727)
Q Consensus 351 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~ 428 (727)
....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|+++. +.++.+|++|++++++
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 344679999999999999999999999999876654 44456899999999999999999998 7789999999999999
Q ss_pred cCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCC--CCccc
Q 004860 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (727)
Q Consensus 429 ~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (727)
++. +++..+++.|+++++|+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ +++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 763 478899999999999999999999999988643 34567899999999999999999999988764 37899
Q ss_pred ccccccccccccccCCC-CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCcccccc-ccccccc
Q 004860 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA-DHEEVYF 579 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~-~~~~~~f 579 (727)
|.||+||++++++...+ ..+...+++|+|++|++++|+|++|+++|.|+. |||+|...+.+...+|++. +.+...|
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~gY~~~~e~~~~~~ 488 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFEQTY 488 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHHHHH
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhhhcCCHHHHHhhh
Confidence 99999999976555433 234566899999999999999999999999985 9999944222222233333 2232222
Q ss_pred cccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEE
Q 004860 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (727)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~ 659 (727)
. ....+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.++||
T Consensus 489 ~----~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~ 562 (652)
T 1pg4_A 489 F----STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAY 562 (652)
T ss_dssp H----SSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEE
T ss_pred h----hcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEE
Confidence 1 111239999999999999999999999999999999999999999996 9999999999999998887 999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 660 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
|+++++...+ +++.+.|+++++++||+||+|+.|+++++||+|+||||+|++|++++.+++
T Consensus 563 Vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 563 VTLNHGEEPS-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp EEECTTCCCC-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred EEECCCCCCC-HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 9998876544 456778888899999999999999999999999999999999999998753
No 3
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4e-86 Score=761.69 Aligned_cols=588 Identities=23% Similarity=0.363 Sum_probs=470.0
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCC---C-CCCCCCCcCCCCcccHhhhhccCCCCCCCC
Q 004860 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (727)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~ 189 (727)
+...+.+|..+++++++++..||..+++.. +.|.+++.++++.. . ...+..+||.++..|.+++++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 445566789999999999999999998852 57999999988754 2 1233369999999999999998765 679
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCC
Q 004860 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (727)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~ 267 (727)
||++|+++.+. ..+..+++||+||+++++++|+.|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1234468999999999999999999 88 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhC---C--CcEEEEcCCCC-CCCCCCCcCcccHHHHhcccCC
Q 004860 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---P--LKAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 268 ~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~--~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
+.+++.++|+++++++||+++...++++.++....+.+.. + ..++++..... .... ......+|.+++.....
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC
Confidence 9999999999999999999998777666666554443332 2 23444443221 1110 11234568877654321
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHH-hhchhcCCCCCCEEEEecccccccch-HHhHHhh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l 419 (727)
..+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|+++. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345679999999999999999999999999876654 34456899999999999999999998 7789999
Q ss_pred hcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhh
Q 004860 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (727)
Q Consensus 420 ~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~ 494 (727)
+.|++++++++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999763 478899999999999999999999999987654 345678999999999999999999999887
Q ss_pred CC--CCcccccccccccccccccCCC--CCCccccccccCCCCceEEEECC-CCCcCCC-CCCeeeeEEEecccCCCCcc
Q 004860 495 AW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGLFPLYLGASDR 568 (727)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~-G~~giGel~v~~~y~~~~~~ 568 (727)
++ .++++|.||+||++++++.... ..+...+++|+|++|++++|+|+ +|+++|. |+. |||+|...+.+...+
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFART 485 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCE
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcc
Confidence 64 3889999999999876555433 23456789999999999999998 8999988 874 999994322222223
Q ss_pred cccc-ccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeec
Q 004860 569 LLNA-DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (727)
Q Consensus 569 ~~~~-~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~ 647 (727)
|+++ +.+...|... .+| ||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+
T Consensus 486 y~~~~~~~~~~~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~ 560 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNP--YPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFN 560 (663)
T ss_dssp ETTCHHHHHHHHTSS--STT--SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCC
T ss_pred cccChHHHHHhhhcC--CCC--EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEe
Confidence 3332 2333322110 123 9999999999999999999999999999999999999999996 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCC---CChH---HHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 648 PAGGGPEVLVIFVVLKKGFT---SQPD---KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 648 ~~~~~~~~l~a~vv~~~~~~---~~~~---~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++..| +.++|||+++++.. ...+ ++.+.|+++++++|++||+|+.|+++++||+|+||||+|++|++++.++
T Consensus 561 ~~~~g-~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 561 DDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCTTS-CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred cCCCC-eEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 88777 89999999987643 2112 4677888889999999999999999999999999999999999988765
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.3e-80 Score=703.79 Aligned_cols=521 Identities=19% Similarity=0.206 Sum_probs=407.8
Q ss_pred CCcCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC
Q 004860 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243 (727)
Q Consensus 165 ~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s 243 (727)
..|......|.+..++++++ +++||++|+++.+. .+..+++||+||+++++++|++|+++ +++||+|+|+++|+
T Consensus 47 ~~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~ 121 (580)
T 3etc_A 47 FKILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121 (580)
T ss_dssp CCBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTC
T ss_pred CCCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Confidence 35776777788877777665 68999999998643 13346899999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC---CcEEEEcCCCCC
Q 004860 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGND 320 (727)
Q Consensus 244 ~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~ 320 (727)
+++++++|||+|+|++++|++|.++.+++.+++++++++++|++.... ............+ ...+.+...
T Consensus 122 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 194 (580)
T 3etc_A 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD--- 194 (580)
T ss_dssp THHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS---
T ss_pred HHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc---
Confidence 999999999999999999999999999999999999999999987531 0011222222222 233333211
Q ss_pred CCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEE
Q 004860 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVY 400 (727)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~ 400 (727)
...+..++.+.+....... ..........+++++||+|||||||.||||+++|.++++.+......+++.+++++
T Consensus 195 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (580)
T 3etc_A 195 ----VLEGWIDFRKELEESSPIF-ERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH 269 (580)
T ss_dssp ----CCTTCEEHHHHHHHSCSCC-CCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEE
T ss_pred ----cccccccHHHHHhhCCccc-ccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceE
Confidence 1123455666655433210 00111134578999999999999999999999999988887776667789999999
Q ss_pred EEecccccccchHH-hHHhhhcCcEEEEec-CCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEe
Q 004860 401 CWPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (727)
Q Consensus 401 l~~~~~~~~~~~~~-~~~~l~~G~~lv~~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~ 478 (727)
++.++++|+.+.+. ++.++..|+++++.+ ..+++..+++.|+++++|+++++|++++.|.+.. ....++++||.+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~ 348 (580)
T 3etc_A 270 YTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVV 348 (580)
T ss_dssp EECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEE
T ss_pred EEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEE
Confidence 99999999998875 788999999999885 4568899999999999999999999999998863 44567899999999
Q ss_pred ecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE
Q 004860 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (727)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (727)
|||++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+. |||+|
T Consensus 349 gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v 424 (580)
T 3etc_A 349 AGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVI 424 (580)
T ss_dssp CSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEE
T ss_pred ccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999999888765 689999999999987554433 334566899999999999999999999999996 99999
Q ss_pred ec------ccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHh
Q 004860 559 FP------LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (727)
Q Consensus 559 ~~------~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (727)
.. +.+. .++.+++.|++.|.+ +||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.
T Consensus 425 ~~~~g~~~~~~~--gY~~~p~~t~~~f~~-------gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~ 495 (580)
T 3etc_A 425 NTMEGKPVGLFV--HYGKDPERTEETWHD-------GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI 495 (580)
T ss_dssp ECTTCCCTTCCC--EETTCHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT
T ss_pred ecCCCCCCeeec--cccCCHhHHHhhcCC-------CEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH
Confidence 52 2211 122244567777742 39999999999999999999999999999999999999999995
Q ss_pred hcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHH
Q 004860 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRV 712 (727)
Q Consensus 633 ~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~ 712 (727)
+||+|.+|+|++.+++..+ +.++|+|+++++...+ +.+.+.|++++++.||+||+|..|+++++||+|+||||+|++
T Consensus 496 -~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~ 572 (580)
T 3etc_A 496 -QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYTPS-DSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVE 572 (580)
T ss_dssp -TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCC-HHHHHHHHHHHHHHSCGGGCCSEEEEECC-------------
T ss_pred -hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCCCC-HHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHH
Confidence 9999999999999999888 9999999998876544 567778888999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 004860 713 LRDQIKH 719 (727)
Q Consensus 713 L~~~~~~ 719 (727)
|++++.+
T Consensus 573 Lr~~~~~ 579 (580)
T 3etc_A 573 IRDKDQS 579 (580)
T ss_dssp -------
T ss_pred HHhHhhc
Confidence 9998764
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1e-79 Score=694.07 Aligned_cols=489 Identities=20% Similarity=0.253 Sum_probs=407.8
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.+.+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 34789999999986321 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
+|.++.+++.+++++++++++|+++... +............++++... ..+...+.++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987543 12222222222333333211 1233455555543221
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch----hcCCCCCCEEEEecccccccch-HHhHHh
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (727)
..+.....+++++||+|||||||.||||+++|+++++.+.+... .+++.++|++++.+|++|++++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233457899999999999999999999999999887765432 4578899999999999999998 457889
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCC
Q 004860 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (727)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (727)
|..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999986 46788999999999999999999999999988766677899999999999999999999999988889
Q ss_pred cccccccccccccccccCC----CCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCcc
Q 004860 499 AIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (727)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~ 568 (727)
+++|.||+||++++++.+. .......+++|+|++|++++|+| ++|+++|.|+. |||+| +.||++
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 398 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLN---- 398 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchhhcC----
Confidence 9999999999986544332 12234567899999999999999 67999999996 99999 456665
Q ss_pred ccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecC
Q 004860 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (727)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~ 648 (727)
+++.|+..|.. .+||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 399 --~p~~t~~~~~~------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 399 --DPEATSRTIDK------EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLKD 469 (536)
T ss_dssp --CHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEE
T ss_pred --ChhHHHhhccC------CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeeec
Confidence 34466666643 349999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 649 ~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
+..+ +.++|||+..++...+.+++++ +++++||.||+|..|+++++||+|+||||||++|++++++
T Consensus 470 ~~~g-~~~~a~vv~~~~~~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 470 EDAG-EVPVAFVVKSEKSQATEDEIKQ----YISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTTE-EEEEEEEEECTTCCCCHHHHHH----HHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCC-ceeEEEEEecCCCCCCHHHHHH----HHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 8888 9999999998876666666555 5778999999999999999999999999999999987753
No 6
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.4e-80 Score=707.50 Aligned_cols=466 Identities=19% Similarity=0.174 Sum_probs=385.7
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+|+++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++||||
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 4578999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
||.+|.+++.+++++++++++|+++.........+ .. .+... ..
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~------------~~------------------~~~~~----~~-- 151 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP------------CV------------------PVRHL----PA-- 151 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSC------------EE------------------EGGGC----CC--
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccCCc------------ee------------------eeccC----Cc--
Confidence 99999999999999999999997654221100000 00 00000 00
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (727)
...........++++|||+|||||||+||||+++|+++.+.+.+ ...+++.++|++++.+|++|+.+++++|.+|+.|+
T Consensus 152 ~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 152 APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 00111222346799999999999999999999999999887766 56788999999999999999999999999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 424 ~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
++++.+. ..++..++++|+++++|++.++|++++.|.+.. ..++++||.+++|||+++++..+.+...+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 9999753 458889999999999999999999999998753 345789999999999999888888877778899999
Q ss_pred cccccccccccccCCC---CCCccccccccCCCCceEEEECCCCCc-CCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~-~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
.||+||++++++.... .......++|+|++|++++|+|+++++ +|.|+. |||+| +.||++ +++
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~GY~~------~p~ 379 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRN------DAA 379 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSEETT------CHH
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccccCC------Chh
Confidence 9999999875543222 122345689999999999999999988 789986 99998 466766 445
Q ss_pred cccccccccccCCCc--eeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCC
Q 004860 574 HEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~--~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~ 651 (727)
.|++.|..+|+ +|. +||||||+|++++||+|+|+||+|||||++|+||+|+|||++|. +||+|.+|+|++.+++..
T Consensus 380 ~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 457 (620)
T 4dg8_A 380 RTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNGV 457 (620)
T ss_dssp HHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETTE
T ss_pred hhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCCc
Confidence 78889998884 344 89999999999999999999999999999999999999999996 999999999999887644
Q ss_pred CceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 652 ~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
..++++++.... .++ +.++++||.||+|..|+++++||+|+||||||++|++.+...
T Consensus 458 --~~lv~~~~~~~~------~~~----~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 458 --KQLLCAWTGKAD------ASP----QALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp --EEEEEEEEECTT------CCC----HHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred --eEEEEEEecChH------HHH----HHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 456666664321 122 246678999999999999999999999999999999887544
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.5e-80 Score=699.91 Aligned_cols=501 Identities=19% Similarity=0.193 Sum_probs=376.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++|||+
T Consensus 29 a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 29 AEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccC
Confidence 47899999999987422233445999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|+++... +.............+++.. ....++.++.......
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-- 170 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSED-- 170 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCSC--
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCccc--
Confidence 999999999999999999999997543 2222233333322222211 1233566665544321
Q ss_pred CCCCCCccCC-CCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCc
Q 004860 345 PNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (727)
Q Consensus 345 ~~~~~~~~~~-~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (727)
....... +++++||+|||||||+||||+++|+++++.+.+....+++.++|++++.+|++|+.++..++.++..|+
T Consensus 171 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~ 247 (549)
T 3g7s_A 171 ---FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGN 247 (549)
T ss_dssp ---CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCC
T ss_pred ---cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCc
Confidence 1112223 489999999999999999999999999999988888899999999999999999999877888999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCC--CCCccceeEEEeecCCCChhhHHHHHhh----CC-
Q 004860 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSK----AW- 496 (727)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~Lr~i~~gGe~l~~~~~~~~~~~----~~- 496 (727)
++++.+ ..++..+++.|+++++|++.++|+++..|.+..... ..++++||.+++|||++++++.+++.+. ++
T Consensus 248 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~ 326 (549)
T 3g7s_A 248 EYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNN 326 (549)
T ss_dssp EEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSC
T ss_pred eEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCC
Confidence 999987 568899999999999999999999999998754322 2578999999999999999998888776 32
Q ss_pred -CCcccccccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccc
Q 004860 497 -YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (727)
Q Consensus 497 -~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~ 569 (727)
.++++|.||+||++++++..........+++|+|+++++++|+| ++|+++|.|+. |||+| +.||+++
T Consensus 327 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~~---- 400 (549)
T 3g7s_A 327 PRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWKR---- 400 (549)
T ss_dssp TTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETTC----
T ss_pred ccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhhhCCC----
Confidence 37899999999999876666554445678899999999999999 89999999996 99999 4566664
Q ss_pred cccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCC
Q 004860 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (727)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~ 649 (727)
++.|++.|..++ +|.+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++
T Consensus 401 --~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~ 475 (549)
T 3g7s_A 401 --EKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKPDE 475 (549)
T ss_dssp --TTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCCC-
T ss_pred --hhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeEcc
Confidence 446777775333 47789999999999999999999999999999999999999999995 9999999999999998
Q ss_pred CCCceEEEEEEEecCC--CCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 650 GGGPEVLVIFVVLKKG--FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 650 ~~~~~~l~a~vv~~~~--~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
..+ +.++|||+++++ ...+.++++ ++++++||+||+|..|+++++||+|+||||||++|+++....-.++
T Consensus 476 ~~g-~~~~a~vv~~~~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 476 EAG-EVPKAFIVLKPEYRGKVDEEDII----EWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHHH 547 (549)
T ss_dssp ------CEEEEEECSTTTTSCCHHHHH----HHHHTTCC-----CCCCEEEECC-----------------------
T ss_pred ccC-ceEEEEEEECCCccCcCCHHHHH----HHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccccc
Confidence 888 899999999876 345555555 4578899999999999999999999999999999999987765544
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=6.8e-79 Score=681.53 Aligned_cols=485 Identities=21% Similarity=0.217 Sum_probs=402.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+...... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 3678888888753211 02899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|+++.... ....+.......+..+... ....+.+.......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--- 145 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKRD------GIAAIAAKVGATVETLGPD----------GRGSLTDAAAGASE--- 145 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGTT------TTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSCS---
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhhH------HHHHHHhhcCceEEEecCC----------cccccchhhhcCCC---
Confidence 9999999999999999999999876432 2222222222222222111 11122222221111
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH-HhHHhhhcCc
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~ 423 (727)
........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+++++ .++.+++.|+
T Consensus 146 --~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 146 --AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp --CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred --CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1222345679999999999999999999999999999998888889999999999999999999974 4778899999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
++++.+ ..++..+++.++ ++|++.++|+++..|++.......++++||.+++|||+++++..+++...+ +++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccce
Confidence 999987 568889999987 899999999999999988766677789999999999999999998888775 5789999
Q ss_pred ccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccc
Q 004860 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (727)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~ 577 (727)
||+||+++.++ .........+++|+|++|++++|+| ++|+++|.|+. |||+| +.||++ +++.|++
T Consensus 300 YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~ 370 (503)
T 4fuq_A 300 YGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWR------MPEKTKS 370 (503)
T ss_dssp CEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCCBTT------CHHHHHH
T ss_pred EcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhhhcC------ChhhhHh
Confidence 99999987543 3333344567899999999999999 88999999996 99999 456665 4446777
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|..+ +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 371 ~f~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 442 (503)
T 4fuq_A 371 EFRDD------GFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVT 442 (503)
T ss_dssp TBCTT------SCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred hhCCC------CCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeE
Confidence 77643 39999999999999999999999999999999999999999995 9999999999999998888 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
++|+.+++...+.+++++ +++++||+||+|..|+++++||+|+||||||++|++++++.+
T Consensus 443 a~v~~~~~~~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 443 AVVVRDKGATIDEAQVLH----GLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp EEEEECTTCCCCHHHHHH----HHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred EEEEeCCCCCCCHHHHHH----HHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence 999998877777665554 578899999999999999999999999999999999987654
No 9
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.3e-78 Score=681.25 Aligned_cols=483 Identities=20% Similarity=0.197 Sum_probs=414.7
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
|+++||++|+++.++ ++||+||+++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 11 a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 82 (511)
T 3e7w_A 11 AETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPV 82 (511)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEec
Confidence 478999999998776 999999999999999999885 7899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
+|.++.+++.+++++++++++|+++..... . . .......++.++......
T Consensus 83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~--~----------~----------------~~~~~~~~~~~~~~~~~~-- 132 (511)
T 3e7w_A 83 DLSIPSERIAKIIESSGAELLIHAAGLSID--A----------V----------------GQQIQTVSAEELLENEGG-- 132 (511)
T ss_dssp ETTSCHHHHHHHHHHHTCCEEEESSSCCTT--C----------C----------------CCSSCEEEHHHHHTSCSC--
T ss_pred CCCChHHHHHHHHHhCCCCEEEecccccch--h----------c----------------ccccceecHhhhhccccC--
Confidence 999999999999999999999997642100 0 0 000112344454443222
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (727)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|..|+
T Consensus 133 --~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 210 (511)
T 3e7w_A 133 --SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGG 210 (511)
T ss_dssp --CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTC
T ss_pred --CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCC
Confidence 111223356789999999999999999999999999999998888899999999999999999999988999999999
Q ss_pred EEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 424 TLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 424 ~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
++++.+.. .++..+++.|+++++|++.++|++++.++........+++++|.+++|||++++++.+++.+.+++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~ 290 (511)
T 3e7w_A 211 TLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIF 290 (511)
T ss_dssp EEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred EEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEE
Confidence 99998643 4678899999999999999999999999988766667789999999999999999999999998889999
Q ss_pred ccccccccccccccCCCC----CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccc
Q 004860 502 ESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNA 572 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~ 572 (727)
|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+| +.||++ ++
T Consensus 291 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~ 362 (511)
T 3e7w_A 291 NTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYLG------EP 362 (511)
T ss_dssp ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCCBTT------CH
T ss_pred eCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChhhCC------Cc
Confidence 999999998765433221 12344679999999999999999999999996 99999 356665 44
Q ss_pred ccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCC
Q 004860 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (727)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~ 652 (727)
+.|++.|... +|.+||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+
T Consensus 363 ~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~ 437 (511)
T 3e7w_A 363 ELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGTV 437 (511)
T ss_dssp HHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSSC
T ss_pred ccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCCc
Confidence 4677777543 36678999999999 69999999999999999999999999999995 8999999999999988777
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
+.++++|+++++...+..++.+.|+++++++||.||+|..|+++++||+|+||||||++|++++...-.
T Consensus 438 -~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 506 (511)
T 3e7w_A 438 -EYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH 506 (511)
T ss_dssp -CEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred -eEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence 899999999887666666778889999999999999999999999999999999999999999876543
No 10
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=5.1e-79 Score=688.47 Aligned_cols=490 Identities=19% Similarity=0.215 Sum_probs=402.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||++
T Consensus 35 a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 106 (539)
T 1mdb_A 35 AAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106 (539)
T ss_dssp HHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCC
Confidence 468999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
|.++.+++.+++++++++++|+++.... .........+....+. ..+++.... ..|.++......
T Consensus 107 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-- 172 (539)
T 1mdb_A 107 PSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE-- 172 (539)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC--
T ss_pred CCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc--
Confidence 9999999999999999999999875321 0000112222222222 112221110 012222211111
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH--HhHHhhhc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~~ 421 (727)
........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++. .++.+|+.
T Consensus 173 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 249 (539)
T 1mdb_A 173 ---PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249 (539)
T ss_dssp ---CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred ---ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHh
Confidence 1112335679999999999999999999999999999988888888999999999999999999875 58999999
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ +++++
T Consensus 250 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~ 327 (539)
T 1mdb_A 250 GGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQ 327 (539)
T ss_dssp TCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEE
T ss_pred CCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEE
Confidence 99999986 46789999999999999999999999999876544556789999999999999999988888776 68899
Q ss_pred ccccccccccccccCCCCCCccccccccCCCCc-eEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
|.||+||+++.++..........+++|+|+++. +++|+|++++++|.|+. |||+| +.||++ +++.|
T Consensus 328 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t 399 (539)
T 1mdb_A 328 QVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYK------AEEHN 399 (539)
T ss_dssp EEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTT------CHHHH
T ss_pred EEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchhhcC------Chhhh
Confidence 999999976543322211123456899999765 79999999999999996 99998 456665 34466
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.
T Consensus 400 ~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~ 471 (539)
T 1mdb_A 400 AASFTED------GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ER 471 (539)
T ss_dssp HHHBCTT------SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EE
T ss_pred hhhccCC------CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-ce
Confidence 7777543 39999999999999999999999999999999999999999995 9999999999999998777 89
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhh-cCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
++|||++++ ...+.+++++ .++++ ||+||+|+.|+++++||+|+||||||++|++++.+++++
T Consensus 472 ~~a~vv~~~-~~~~~~~l~~----~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 535 (539)
T 1mdb_A 472 SCVFIIPRD-EAPKAAELKA----FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535 (539)
T ss_dssp EEEEEEESS-SCCCHHHHHH----HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred EEEEEEECC-CCCCHHHHHH----HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhc
Confidence 999999874 3455555555 46676 999999999999999999999999999999999888765
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=5.2e-79 Score=684.98 Aligned_cols=487 Identities=19% Similarity=0.217 Sum_probs=408.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ ++||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~ 82 (512)
T 3fce_A 11 AAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVD 82 (512)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeC
Confidence 468999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|++....... .+.. ++. ...+.+.......
T Consensus 83 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~------------~~~~--~~~-------------~~~~~~~~~~~~~--- 132 (512)
T 3fce_A 83 LSIPADRVQRIAENSGAKLLLSATAVTVTD------------LPVR--IVS-------------EDNLKDIFFTHKG--- 132 (512)
T ss_dssp TTSCHHHHHHHHHHSCCCEEEESSCCCSSC------------CSSE--EEE-------------THHHHHHHHHTTT---
T ss_pred CCCcHHHHHHHHHhcCCCEEEecCcccccc------------cccc--eec-------------hhhhhhhcccccc---
Confidence 999999999999999999999975421100 0000 000 0112222211111
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+.+++.++.+++.|++
T Consensus 133 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 212 (512)
T 3fce_A 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGT 212 (512)
T ss_dssp CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCE
T ss_pred cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCE
Confidence 11122334567999999999999999999999999999999888888999999999999999999999989999999999
Q ss_pred EEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 425 lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
+++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++|||++++++.+++.+.+++++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 9998743 47789999999999999999999999998877666778899999999999999999999999988899999
Q ss_pred cccccccccccccCCCCC----CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 503 SCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
.||+||+++.++...... .....++|+|+++++++|+|++|+++|.|+. |||+| +.||++ +++
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~ 364 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVGYLG------SPE 364 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSCBTT------CHH
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChhhcC------Cch
Confidence 999999987654332211 1245689999999999999999999999996 99999 356665 444
Q ss_pred cccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
.|++.|.. .+|.+||+|||+|++ +||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.++...+
T Consensus 365 ~t~~~f~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~- 438 (512)
T 3fce_A 365 LTEKAFTM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY- 438 (512)
T ss_dssp HHHHHEEE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE-
T ss_pred hhhhcccc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc-
Confidence 66766643 236779999999999 89999999999999999999999999999995 9999999999999887777
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
+.++|+|++.++...+...+.+.|+++++++||.|++|..|+++++||+|+||||||++|++.+.++-.+.
T Consensus 439 ~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~ 509 (512)
T 3fce_A 439 DYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHH 509 (512)
T ss_dssp EEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-----
T ss_pred eEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccccc
Confidence 89999999987665555677788999999999999999999999999999999999999999998765544
No 12
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3.4e-79 Score=686.30 Aligned_cols=483 Identities=22% Similarity=0.209 Sum_probs=399.8
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.+.. .++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||+
T Consensus 25 ~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 34789999999986431 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
+|.++.+++.+++++++++++|++.... +....+...... ....+ ....++.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDW------------IGADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEE------------EEHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEc------------cCcccHHHHhhccCc
Confidence 9999999999999999999999987532 122222211111 00000 011224444433221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhc
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (727)
..+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+.+++.++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 122334578999999999999999999999999999999888888999999999999999999999876666669
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++... +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999986 4688999999999999999999999999987654445678899999999999999999888776 68999
Q ss_pred ccccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
|.||+||+++..+..... .....+++|+|+++++++|+|++++++|.| . |||+| +.||++ +++.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~GY~~------~p~~t 383 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKEYWN------RPEAT 383 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSEETT------CHHHH
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhhhCC------Chhhh
Confidence 999999998755443332 234567899999999999999999999988 3 99999 456665 34467
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
++.|. .+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.
T Consensus 384 ~~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~ 454 (517)
T 3r44_A 384 RDAFD-------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG-EI 454 (517)
T ss_dssp HHTEE-------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EE
T ss_pred Hhhhc-------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC-ce
Confidence 76773 239999999999999999999999999999999999999999995 9999999999999998887 88
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
++++| ..++...+.+++++ +++++||+||+|..|+++++||+|+||||||++|++++.+.+.
T Consensus 455 ~~a~v-~~~~~~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 455 AAAIV-VADQNEVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp EEEEE-EECTTTCCHHHHHH----HHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred EEEEE-ECCCCCCCHHHHHH----HHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 88888 55555666666555 5778899999999999999999999999999999999987654
No 13
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.5e-77 Score=685.31 Aligned_cols=485 Identities=18% Similarity=0.212 Sum_probs=400.1
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCC
Q 004860 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (727)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~ 268 (727)
||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|+++||++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999999877 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCC
Q 004860 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (727)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (727)
.+++.++++++++++++++....... .......+....+. ....+.... ....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALFS-GDDFLNTFVTEHSSIRVVQLLNDS---------GEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHHSTTCCEEEEETCC---------STTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEecccccccc-cHHHHHHHhhcCCccceeeecccc---------cccchhhhhccccc-----c
Confidence 99999999999999999987532100 00111222222222 222221111 11234444333221 1
Q ss_pred CCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch--HHhHHhhhcCcEE
Q 004860 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLNGATL 425 (727)
Q Consensus 348 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~l~~G~~l 425 (727)
.......++++|||+|||||||+||||+++|+++++.+.+....+++.++|++++.+|++|.++. +++|.+|+.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22234567999999999999999999999999999999998888999999999999998877665 4689999999999
Q ss_pred EEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
++.+ ..++..+++.|+++++|++.++|+++..|++... ....++++||.+++|||++++++.+++...+ +++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9986 4677889999999999999999999999877532 2233689999999999999999998888776 6899999
Q ss_pred ccccccccccccCCCCCCccccccccCC-CCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccc
Q 004860 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (727)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~ 577 (727)
||+||+++.++...........++|+|+ ++.+++|+|++++++|.|+. |||+| +.||++ +++.|++
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~GY~~------~p~~t~~ 405 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 405 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSCCTT------CHHHHHH
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccchhcC------Chhhhhh
Confidence 9999998765543333233346889997 78899999999999999996 99998 466666 4457888
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|..++ ||||||+|++++||+|+|+||+|||||++|+||+|+|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 406 ~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 477 (617)
T 3rg2_A 406 AFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELMG-EKSC 477 (617)
T ss_dssp HBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred ccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEE
Confidence 886543 8999999999999999999999999999999999999999995 9999999999999988777 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
+|++..+ ..+.+++++ .+++ .||.||+|..|+++++||+|+||||||++|++++....
T Consensus 478 a~vv~~~--~~~~~~l~~----~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 478 AYLVVKE--PLRAVQVRR----FLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEEESS--CCCHHHHHH----HHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred EEEEeCC--CCCHHHHHH----HHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 9999876 345555554 4666 69999999999999999999999999999999886553
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.1e-76 Score=672.57 Aligned_cols=514 Identities=22% Similarity=0.288 Sum_probs=416.6
Q ss_pred CCCcCCCCcccHhhhhccCCC---CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEE
Q 004860 164 GGTWLPGSVLNIAECCLLPSN---HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAI 238 (727)
Q Consensus 164 ~~~w~~~~~~~~~~~~l~~~~---~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai 238 (727)
+..|+.+...|....++.+++ +|+++||++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~---g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGK---GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSS---SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCC---CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 456766666666666665543 23449999999985421 1234899999999999999999986 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcC
Q 004860 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPA 316 (727)
Q Consensus 239 ~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~ 316 (727)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++... +....+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999987532 122222223332 2333321
Q ss_pred CCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHH--HHHhhchhcCC
Q 004860 317 IGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDL 394 (727)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~--~~~~~~~~~~~ 394 (727)
.. ..+...+.+++..... ........+++++||+|||||||.||||+++|+ ++. ..... ..+++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~ 244 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL 244 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC
T ss_pred cC-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC
Confidence 11 1123356666544322 111233467999999999999999999999999 444 44444 67889
Q ss_pred CCCCEEEEecccccccchH-HhHHhhhcCcEEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccc
Q 004860 395 KVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (727)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 472 (727)
+++|++++.+|++|+.+++ .++.+|..|+++++.+. ..++..+++.|+++++|++.++|++++.|.+.. ....++++
T Consensus 245 ~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~ 323 (570)
T 3c5e_A 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPH 323 (570)
T ss_dssp CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTT
T ss_pred CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccccccc
Confidence 9999999999999999986 68899999999999864 568899999999999999999999999998763 34456899
Q ss_pred eeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCe
Q 004860 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (727)
Q Consensus 473 Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~g 552 (727)
||.+++|||+++++..+++.+.+ +++++|.||+||+++.++... ......+++|+|+++++++|+|++|+++|.|+.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~- 400 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE- 400 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC-
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCCCCCCCC-
Confidence 99999999999999998888766 688999999999986544332 223456789999999999999999999999996
Q ss_pred eeeEEEe----------cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceee
Q 004860 553 VGEVGLF----------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622 (727)
Q Consensus 553 iGel~v~----------~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri 622 (727)
|||+|. .||++ +++.|.+.|.+ +||+|||+|++++||+|+|+||+||+||++|+||
T Consensus 401 -GEl~v~~~~~~g~~v~~GY~~------~~~~t~~~f~~-------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V 466 (570)
T 3c5e_A 401 -GDIGIRVKPIRPIGIFSGYVD------NPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRI 466 (570)
T ss_dssp -EEEEEECSSBCCTTCCCEETT------CHHHHHHTEET-------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEE
T ss_pred -CeeEEeccCCCCchhhccccC------ChhHhhhhhcC-------CccccceeEEEcCCceEEEEecCCCEEEECCEEE
Confidence 999985 24444 34466666641 3999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCC-CChHHHHHHHHHHHHhhcCCCcccceEEEcCCCC
Q 004860 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP 701 (727)
Q Consensus 623 ~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~-~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP 701 (727)
+|.|||++|. +||+|.+|+|++.+++..+ +.++|||+++++.. .+.+.+.+.|+++++++||+||+|..|+++++||
T Consensus 467 ~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP 544 (570)
T 3c5e_A 467 GPSEVENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLP 544 (570)
T ss_dssp CHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCC
T ss_pred CHHHHHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCC
Confidence 9999999995 9999999999999988777 89999999876532 2335567788888999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHhhh
Q 004860 702 RTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 702 ~t~~GKvdR~~L~~~~~~~ 720 (727)
+|+||||+|++|++.+...
T Consensus 545 ~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 545 KTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp BCTTCCBCHHHHHHHHTC-
T ss_pred CCCCcCCcHHHHHHHHHhh
Confidence 9999999999999987654
No 15
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.7e-77 Score=674.22 Aligned_cols=491 Identities=19% Similarity=0.169 Sum_probs=405.0
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+++ |++|+++.+.+ +++||+||+++++++|+.|+++ +++||+|+|+++|++++++++|||+++|++++|++|
T Consensus 37 ~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~ 109 (548)
T 2d1s_A 37 AKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109 (548)
T ss_dssp HHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECT
T ss_pred ccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCC
Confidence 567 99999974211 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC--CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
.++.+++.+++++++++++|+++... +....+....+ ..++++.... ...+...|.++.......
T Consensus 110 ~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~- 176 (548)
T 2d1s_A 110 IYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKV------DYRGYQCLDTFIKRNTPP- 176 (548)
T ss_dssp TSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSS------CBTTBCBHHHHHHHTSCT-
T ss_pred CCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCcc------cccccccHHHHHhcCccc-
Confidence 99999999999999999999987532 12222222332 2222222110 001223466665543210
Q ss_pred CCCCCCCccC------CCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh---cCCCCCCEEEEecccccccchHH
Q 004860 344 RPNYYSPVYN------PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVI 414 (727)
Q Consensus 344 ~~~~~~~~~~------~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~ 414 (727)
..+.... .+++++||+|||||||.||||+++|+++++.+.+.... ++++++|++++.+|++|+++++.
T Consensus 177 ---~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~ 253 (548)
T 2d1s_A 177 ---GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFT 253 (548)
T ss_dssp ---TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH
T ss_pred ---cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHH
Confidence 0011111 23899999999999999999999999999888777665 78899999999999999999866
Q ss_pred -hHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHh
Q 004860 415 -LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (727)
Q Consensus 415 -~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~ 493 (727)
++.++ .|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+
T Consensus 254 ~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~ 331 (548)
T 2d1s_A 254 TLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVAR 331 (548)
T ss_dssp HHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHH
Confidence 56667 999999986 468899999999999999999999999999876555667899999999999999999999998
Q ss_pred hCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCc
Q 004860 494 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (727)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~ 567 (727)
.+++++++|.||+||+++.++... ......+++|+|+++++++|+| ++++++|.|+. |||+| +.||++
T Consensus 332 ~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~--- 405 (548)
T 2d1s_A 332 RFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVN--- 405 (548)
T ss_dssp HTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT---
T ss_pred HcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhhhcC---
Confidence 887889999999999987655432 2234567899999999999999 78999999996 99999 345655
Q ss_pred cccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeec
Q 004860 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (727)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~ 647 (727)
+++.|++.|.. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+
T Consensus 406 ---~~~~t~~~f~~------~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V~~~~ 475 (548)
T 2d1s_A 406 ---NPEATKELIDE------EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGVAGVP 475 (548)
T ss_dssp ---CHHHHHHHBCT------TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEEEEEE
T ss_pred ---ChHHhhhcccC------CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEE
Confidence 33456666642 239999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccc-eEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS-LVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 648 ~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~-~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
++..| +.++|+|+++++...+.+++++ +++++|++|++|. .|+++++||+|+|||++|++|++++.+.+++
T Consensus 476 ~~~~g-~~~~a~vv~~~~~~~~~~~l~~----~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 476 DPVAG-ELPGAVVVLESGKNMTEKEVMD----YVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp ETTTE-EEEEEEEEECTTCCCCHHHHHH----HHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred cCCCC-eeeEEEEEEcCCCCCCHHHHHH----HHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence 98887 8999999998876666665555 5778999999999 9999999999999999999999999887653
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8.2e-78 Score=680.95 Aligned_cols=467 Identities=19% Similarity=0.183 Sum_probs=389.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 49 a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 49 VSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPID 120 (563)
T ss_dssp HHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeC
Confidence 478999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC--CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
|.++.+++.+++++++++++|+++.... ...... ..+.++... . + .....
T Consensus 121 ~~~~~~~l~~il~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~~~~-----------~--~----~~~~~- 172 (563)
T 1amu_A 121 IEYPKERIQYILDDSQARMLLTQKHLVH----------LIHNIQFNGQVEIFEED-----------T--I----KIREG- 172 (563)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHH----------HHTTSCCCSEEEECCCS-----------T--T----TTSCC-
T ss_pred CCCcHHHHHHHHHhcCCCEEEEcCchhh----------hhhhccccCceeeecch-----------h--h----ccccC-
Confidence 9999999999999999999999875321 111111 111111100 0 0 00000
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcC
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (727)
........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.|
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 248 (563)
T 1amu_A 173 ----TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 248 (563)
T ss_dssp ----SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred ----ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCC
Confidence 0111234678999999999999999999999999999888887888999999999999999999999899999999
Q ss_pred cEEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
+++++.+.. .++..+++.|+++++|++.++|+++..|... ++++||.+++||+++++++.+++.+. +++
T Consensus 249 ~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~ 319 (563)
T 1amu_A 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTY 319 (563)
T ss_dssp CEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEE
T ss_pred CEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeE
Confidence 999998642 4778899999999999999999998877432 46799999999999999998887653 689
Q ss_pred cccccccccccccccCCCC--CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 501 IESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
+|.||+||++++++..... ......++|+|+++++++|+|++++++|.|+. |||+| +.||++ +++
T Consensus 320 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~pe 391 (563)
T 1amu_A 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWK------RPE 391 (563)
T ss_dssp EEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHH
T ss_pred EEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChhhCC------Cch
Confidence 9999999998755443221 22345689999999999999999999999995 99998 345655 445
Q ss_pred cccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
.|++.|..+|+.+|.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+
T Consensus 392 ~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~- 469 (563)
T 1amu_A 392 LTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ- 469 (563)
T ss_dssp HHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC-
T ss_pred hhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCCC-
Confidence 78888988888888899999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHH
Q 004860 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717 (727)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 717 (727)
+.++|||+... ..+.+++++ +++++||+||+|..|+++++||+|+||||||++|++..
T Consensus 470 ~~~~a~vv~~~--~~~~~~l~~----~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 470 PYLCAYFVSEK--HIPLEQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp EEEEEEEEESS--CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred eEEEEEEEeCC--CCCHHHHHH----HHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 89999999764 345455544 57788999999999999999999999999999998754
No 17
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=6.5e-77 Score=666.31 Aligned_cols=474 Identities=20% Similarity=0.187 Sum_probs=388.8
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+.+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 12 a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 12 ATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLN 85 (504)
T ss_dssp HHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Confidence 4689999999986211 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEe--ecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
|.++.+++.+++++++++++|+ ++... ..+....+... ++ .++++.......
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~-~~----------------~~~~~~~~~~~~ 139 (504)
T 1t5h_X 86 PRLKSAELAELIKRGEMTAAVIAVGRQVA---------DAIFQSGSGAR-II----------------FLGDLVRDGEPY 139 (504)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEECC--CHH---------HHHHHHCCCCE-EE----------------EGGGTEETTEEC
T ss_pred CccChHHHHHHHhhcCCcEEEEecchhhh---------hhhhhccccce-eE----------------EecchhhcCccc
Confidence 9999999999999999999999 55321 11111111111 11 122222211000
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCC--CCCCEEEEecccccccch-HHhHHhh
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGP-VILFSSF 419 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~~~~~l 419 (727)
............+++++||+|||||||.||||+++|+++.+.+.+....+++ .++|++++.+|++|+.++ +.++.+|
T Consensus 140 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l 219 (504)
T 1t5h_X 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219 (504)
T ss_dssp CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHH
T ss_pred ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHH
Confidence 0000111133467999999999999999999999999999988887777888 889999999999999998 5688999
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCCC
Q 004860 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (727)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (727)
+.|+++++.+ ..++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.+ +
T Consensus 220 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~ 297 (504)
T 1t5h_X 220 ALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-P 297 (504)
T ss_dssp HTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-C
T ss_pred HcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-C
Confidence 9999999987 4688899999999999999999999999987542 2445689999999999999999999998876 4
Q ss_pred CcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCC---CcCCCCCCeeeeEEEe------cccCCCCcc
Q 004860 498 NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG---VPYPDDQPCVGEVGLF------PLYLGASDR 568 (727)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~---~~~p~G~~giGel~v~------~~y~~~~~~ 568 (727)
++++|.||+||+++.+... ....+++|+|.++++++|+|+++ +++|.|+. |||+|. .||++
T Consensus 298 ~~~~~~YG~TE~~~~~~~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~GY~~---- 367 (504)
T 1t5h_X 298 GEKVNIYGTTEAMNSLYMR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLN---- 367 (504)
T ss_dssp SEEEEEEEETTTEEEEEEE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTT----
T ss_pred cceeeeecccccccccccc----CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeeceecC----
Confidence 7899999999994332211 23457899999999999999888 99999996 999995 35554
Q ss_pred ccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecC
Q 004860 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (727)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~ 648 (727)
+++.|++.|. .| ||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 368 --~~~~t~~~f~-----~g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 437 (504)
T 1t5h_X 368 --QPQATAEKLQ-----DG--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLAD 437 (504)
T ss_dssp --CHHHHHHHEE-----TT--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEC
T ss_pred --Cchhhhhhhc-----CC--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEeec
Confidence 3446666773 13 9999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHh
Q 004860 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718 (727)
Q Consensus 649 ~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 718 (727)
+..+ +.++|||+++++...+.+++++ ++++ +||+||+|+.|+++++||+|+||||||++|+++++
T Consensus 438 ~~~g-~~~~a~vv~~~~~~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 438 QRWG-QSVTACVVPRLGETLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SSSS-EEEEEEEEECTTCCCCHHHHHH----HHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred CCCC-cEEEEEEEecCCcCcCHHHHHH----HHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 8888 9999999998876666666655 4666 89999999999999999999999999999998874
No 18
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.5e-77 Score=674.96 Aligned_cols=488 Identities=15% Similarity=0.141 Sum_probs=394.7
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+.+.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 14 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~ 85 (521)
T 3l8c_A 14 AQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVD 85 (521)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecC
Confidence 468999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|+++......... ....+.++...... .
T Consensus 86 ~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~--~ 133 (521)
T 3l8c_A 86 VHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------------------SLVSLSEIESAKLA--E 133 (521)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------------------EEEEHHHHHHHHHH--T
T ss_pred ccccHHHHHHHHHhCCCCEEEecCccccccccC------------------------------cccchhhhhhcccc--c
Confidence 999999999999999999999987542111100 01112221111000 0
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh--cCCCCCCEEEEecccccccchHHhHHhhhcC
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (727)
..........+++++||+|||||||.||||+++|+++++.+.+.... +++.+++++++..|++|+.+.+.++.++..|
T Consensus 134 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 213 (521)
T 3l8c_A 134 MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALG 213 (521)
T ss_dssp CCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTT
T ss_pred CCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcC
Confidence 01112234567999999999999999999999999999887766554 7788999999999999999998899999999
Q ss_pred cEEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
+++++.+.. .++..+++.|.++++|++.++|+++..+.........++++||.+++||++++++..+++.+.++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i 293 (521)
T 3l8c_A 214 GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKI 293 (521)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceE
Confidence 999998643 377889999999999999999999999988766666778999999999999999999999988888999
Q ss_pred cccccccccccccccCCCC----CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccc
Q 004860 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~ 571 (727)
+|.||+||+++.++..... .....+++|+|+++++++|+|++|+++|.|+. |||+| +.||++ +
T Consensus 294 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~ 365 (521)
T 3l8c_A 294 INAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKGYLN------N 365 (521)
T ss_dssp EEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSCBTT------C
T ss_pred EeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChhhcC------C
Confidence 9999999998765433221 11234679999999999999999999999996 99999 346665 4
Q ss_pred cccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCC
Q 004860 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (727)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~ 651 (727)
++.|++.|... ++.+||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.++...
T Consensus 366 ~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~ 441 (521)
T 3l8c_A 366 PEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKEH 441 (521)
T ss_dssp HHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSSC
T ss_pred chHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCCC
Confidence 44677777532 35679999999999999999999999999999999999999999995 999999999998876554
Q ss_pred CceEEEEEEEecCCCCC---ChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhcccC
Q 004860 652 GPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 725 (727)
Q Consensus 652 ~~~~l~a~vv~~~~~~~---~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 725 (727)
+.+.++|+|+++++... ...++.+.|+++++++||+||+|..|+++++||+|+||||||++|++.+.++-.+..
T Consensus 442 ~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~ 518 (521)
T 3l8c_A 442 KVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGHHH 518 (521)
T ss_dssp C---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-------
T ss_pred CceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcccc
Confidence 43889999999876432 223567788888999999999999999999999999999999999999877765543
No 19
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=7.3e-78 Score=725.20 Aligned_cols=559 Identities=18% Similarity=0.207 Sum_probs=325.5
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCCCCCCcCCCCcccHhhhhccCCCCCCCCCCce
Q 004860 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (727)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (727)
|++ ++.++.||++|+.++..+++.+...+..+.....-... ..........+.. ..+.+ +++++||++
T Consensus 11 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl~-~~l~~--~a~~~pd~~ 78 (979)
T 3tsy_A 11 SSG-----LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSLH-DYIFQ--NISEFATKP 78 (979)
T ss_dssp ---------------------------------------CCCBCCS----SCCCCCCTTSCHH-HHHTT--TGGGTTTSE
T ss_pred ccC-----cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCHH-HHHHH--HHHhCCCCe
Confidence 666 99999999999999999998876544443332211110 0111111111222 22322 457899999
Q ss_pred EEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHH
Q 004860 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (727)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l 272 (727)
|+++...+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||++|.+|.+++
T Consensus 79 Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l 152 (979)
T 3tsy_A 79 CLINGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152 (979)
T ss_dssp EEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHH
T ss_pred EEEECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHH
Confidence 99986321 3899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCcc
Q 004860 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (727)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (727)
.++++++++++||+++.... ....+.......++++... .....+.+...|.++...... .....+...
T Consensus 153 ~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 221 (979)
T 3tsy_A 153 AKQAKASNTKLIITEARYVD------KIKPLQNDDGVVIVCIDDN---ESVPIPEGCLRFTELTQSTTE--ASEVIDSVE 221 (979)
T ss_dssp HHHHHHHTEEEEEECSTTTT------TSHHHHHTSCCEEEECCCC---TTSCCCTTEEEGGGTSSCCSG--GGGGSCCSC
T ss_pred HHHHHHcCCeEEEEChHHHH------HHHHHhhcCCceEEEeCCc---ccccCCcccccHHHHhhcccc--ccccCCcCC
Confidence 99999999999999986432 2222322222333333211 111122333445554433221 001122334
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch----hcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEE
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLAL 427 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~ 427 (727)
..+++++||+|||||||+||||+++|+++++.+.+... .+++.++|++++.+|++|++++ ..++.+|..|+++++
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 57899999999999999999999999999887765432 4678899999999999999998 457889999999999
Q ss_pred ecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccccc
Q 004860 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (727)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (727)
.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+++++++|.||+|
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~T 380 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMT 380 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECG
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechh
Confidence 86 46788999999999999999999999999988766677899999999999999999999999988889999999999
Q ss_pred ccccccccCC----CCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccc
Q 004860 508 ELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (727)
Q Consensus 508 E~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~ 577 (727)
|++.+++... ...+...+++|+|++|++++|+| ++++++|.|+. |||+| +.||++ +++.|++
T Consensus 381 E~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~------~p~~t~~ 452 (979)
T 3tsy_A 381 EAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLN------NPAATAE 452 (979)
T ss_dssp GGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETT------CHHHHHH
T ss_pred hhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCccccccC------Chhhhhh
Confidence 9987544332 12234567899999999999999 56999999996 99999 456666 3446777
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+++|++.+++..+ +.++
T Consensus 453 ~f~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~ 524 (979)
T 3tsy_A 453 TIDKD------GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPV 524 (979)
T ss_dssp HBCTT------SCEEEEEEEEECTTSCEEEEEESCC--------------------------------------------
T ss_pred hccCC------CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEE
Confidence 77532 39999999999999999999999999999999999999999995 9999999999999988787 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
+||+.+++...+.++++ ++++++||.||+|..|+++++||+|+||||||++|++++.+.++
T Consensus 525 a~vv~~~~~~~~~~~l~----~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 585 (979)
T 3tsy_A 525 AFVVKSKDSELSEDDVK----QFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585 (979)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEEECCCCCCCHHHHH----HHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence 99998776555545544 45778899999999999999999999999999999999876554
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.7e-78 Score=688.82 Aligned_cols=471 Identities=20% Similarity=0.222 Sum_probs=309.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 85 a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 85 AARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp HHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcC
Confidence 478999999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|+++...... .....++.... .... .
T Consensus 157 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~----------------~~~~-----~ 202 (570)
T 4gr5_A 157 PQFPVERLALSLEDTGAPLLVTSRPLSGRL-------------TGTTTLYVEDE----------------AASD-----A 202 (570)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------------CSSEEEECCC---------------------------
T ss_pred CCChHHHHHHHHHhcCCCEEEecchhhhcc-------------cCCcceeeecc----------------cccc-----c
Confidence 999999999999999999999987543111 11111110000 0000 0
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
..........+++++||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+.+.++.+|+.|++
T Consensus 203 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 281 (570)
T 4gr5_A 203 PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGAR 281 (570)
T ss_dssp -CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCE
T ss_pred cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCE
Confidence 0111223456799999999999999999999999999877765 456789999999999999999888889999999999
Q ss_pred EEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 425 LALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 425 lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
+++.+. ..++..+++.|+++++|++.++|+++..|.+... .++++||.+++|||+++++..+.+.+.+++++++|.
T Consensus 282 ~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 358 (570)
T 4gr5_A 282 CVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNG 358 (570)
T ss_dssp EEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred EEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEe
Confidence 999864 4578899999999999999999999999987642 357899999999999999998888888888999999
Q ss_pred ccccccccccccCCC---CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 504 CGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 504 YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
||+||++++.+.... .......++|+|++|++++|+|++++++|.|+. |||+| +.||++ +++.|
T Consensus 359 YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~GY~~------~~~~t 430 (570)
T 4gr5_A 359 YGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHGYVS------RPALT 430 (570)
T ss_dssp ECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHHHH
T ss_pred echhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchhcCC------Cchhh
Confidence 999999875443322 122334579999999999999999999999995 99999 455665 44578
Q ss_pred ccccccccc--CCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 576 EVYFRGMPM--YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 576 ~~~f~~~p~--~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
++.|..+|+ .++.+||||||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++.++
T Consensus 431 ~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~- 508 (570)
T 4gr5_A 431 AERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLGD- 508 (570)
T ss_dssp HHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------------------------------------
T ss_pred hcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCCC-
Confidence 888887776 356789999999999999999999999999999999999999999995 9999999999999888777
Q ss_pred eEEEEEEEecCCC-CCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHH
Q 004860 654 EVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716 (727)
Q Consensus 654 ~~l~a~vv~~~~~-~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 716 (727)
+.++|||+.+++. ..+.++ |+++++++||.||+|..|+++++||+|+||||||++|++.
T Consensus 509 ~~~~a~vv~~~~~~~~~~~~----l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 509 KQLVAYVVAERADAPPDAAE----LRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------------------------------------------
T ss_pred eEEEEEEEecCCCCCcCHHH----HHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 8999999986532 233344 4556778899999999999999999999999999999875
No 21
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.2e-78 Score=681.02 Aligned_cols=491 Identities=19% Similarity=0.211 Sum_probs=314.3
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 3478999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
+|.++.+++.+++++++++++|+++..... ........+...... .+.++... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ---------ATDFGLLDWIETPAE 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC---------TTSEEHHHHHHSCCS
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC---------ccccchhhhhhcccc
Confidence 999999999999999999999998753210 011112222222222 22222211 011234444333221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH--HhHHhh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSF 419 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l 419 (727)
.........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++. .++.+|
T Consensus 181 ----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l 256 (544)
T 3o83_A 181 ----TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVL 256 (544)
T ss_dssp ----SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred ----cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHH
Confidence 11112345679999999999999999999999999999999888889999999999999999887764 588999
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
..|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ +++
T Consensus 257 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~ 334 (544)
T 3o83_A 257 HAGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCK 334 (544)
T ss_dssp HTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSE
T ss_pred HcCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCc
Confidence 9999999987 46788999999999999999999999999887655556788999999999999999988888776 689
Q ss_pred ccccccccccccccccCCCCCCccccccccCC-CCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
++|.||+||+++.++...........++|+|+ ++++++|+|++++++|.|+. |||+| +.||++ +++
T Consensus 335 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~ 406 (544)
T 3o83_A 335 LQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCGYYQ------SPE 406 (544)
T ss_dssp EEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSCCTT------CHH
T ss_pred EEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchhhcC------Chh
Confidence 99999999998655443333333457899996 89999999999999999996 99998 345665 444
Q ss_pred cccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
.|+..|..+ +||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..|
T Consensus 407 ~t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g- 478 (544)
T 3o83_A 407 HNSQVFDED------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG- 478 (544)
T ss_dssp HHHHHBCTT------CCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------
T ss_pred hhhhhCCCC------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-
Confidence 677777532 39999999999999999999999999999999999999999995 9999999999999998888
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+.++|||+.++. ..+.++++ +++++ .||+||+|..|+++++||+|+||||||++|+++++..
T Consensus 479 ~~~~a~vv~~~~-~~~~~~l~----~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 479 EKSCAFIVSRNP-ELKAVVLR----RHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------------------------------------
T ss_pred ceEEEEEEeCCC-CCCHHHHH----HHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 899999998752 23334444 45666 7999999999999999999999999999999988653
No 22
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.3e-77 Score=677.34 Aligned_cols=491 Identities=22% Similarity=0.234 Sum_probs=366.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 28 AALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp HHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecC
Confidence 368999999996321 1224899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
|.++.+++.+++++++++++|+++... +....+....+. .++++.... +.....|.+++.....
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~- 169 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEEALGEEAD- 169 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHHHCCSCCC-
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHHHhhccCC-
Confidence 999999999999999999999987532 222222222322 122222110 1123456665543221
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHh--hchhcCCCCCCEEEEecccccccchHHhHHhhh
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE--GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~ 420 (727)
.....+++++||+|||||||.||||+++|+++++.... ....++++++|++++.+|++|+.++..++.+++
T Consensus 170 -------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~ 242 (541)
T 1v25_A 170 -------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATL 242 (541)
T ss_dssp -------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHH
T ss_pred -------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHh
Confidence 12345789999999999999999999999999877665 334678899999999999999999877889999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
.|+++++.+...++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++ +.+ ++++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~ 320 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEV 320 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCce
Confidence 99999998755688999999999999999999999999987543334568899999999999999998888 444 7899
Q ss_pred cccccccccccccccCCCCC----------CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCC
Q 004860 501 IESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGA 565 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~ 565 (727)
+|.||+||++.+++...... ....+++|+|+++++++|+|++|+++|.+...+|||+| +.||++
T Consensus 321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~- 399 (541)
T 1v25_A 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG- 399 (541)
T ss_dssp EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBT-
T ss_pred eecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccC-
Confidence 99999999987655443221 02346899999999999999999999853111499998 456665
Q ss_pred CccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEe
Q 004860 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 645 (727)
Q Consensus 566 ~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~ 645 (727)
+++.|++.|..+ +||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++
T Consensus 400 -----~p~~t~~~f~~~------g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~ 467 (541)
T 1v25_A 400 -----NEEATRSALTPD------GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAVVA 467 (541)
T ss_dssp -----CHHHHHTTBCTT------SCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CEEE
T ss_pred -----ChhhhhhhccCC------CCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEEEEE
Confidence 344677777532 39999999999999999999999999999999999999999995 899999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 646 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 646 ~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
.+++..+ +.++|||+++ +...+.+++++ ++++ +||+|++|..|+++++||+|+|||++|++|++++.+.++
T Consensus 468 ~~~~~~~-~~~~a~vv~~-~~~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 468 IPHPKWQ-ERPLAVVVPR-GEKPTPEELNE----HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp EECSSSS-EEEEECC------------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred ecCCCcC-ceEEEEEEEC-CCCCCHHHHHH----HHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 9998888 8999999986 33344444444 4666 899999999999999999999999999999999876654
No 23
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.7e-77 Score=678.07 Aligned_cols=497 Identities=17% Similarity=0.185 Sum_probs=306.6
Q ss_pred CCCCCceEEE---EecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEee
Q 004860 187 RKEDNTVAIV---WREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 187 ~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vp 262 (727)
+++||++|++ +.+. .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|
T Consensus 31 ~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 104 (550)
T 3rix_A 31 KRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAP 104 (550)
T ss_dssp HHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEE
T ss_pred HhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEee
Confidence 6788888875 3211 13899999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccC
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (727)
++|.++.+++.+++++++++++|+++... +.........+. .++++.... ...+..++.++.....
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 105 ANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKT------DYQGFQSMYTFVTSHL 172 (550)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSS------CBTTBCBHHHHHHHHC
T ss_pred cCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCc------cccCcccHHHHhhccc
Confidence 99999999999999999999999987532 222233333332 222222111 1123345666554432
Q ss_pred CCCC--CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh---cCCCCCCEEEEecccccccchHHh
Q 004860 341 YHPR--PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVIL 415 (727)
Q Consensus 341 ~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~~ 415 (727)
.... ....+.....+++++||+|||||||.||||+++|+++++.+.+.... +++.++|++++.+|++|+++++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence 2100 01111122345889999999999999999999999998887766554 578899999999999999999889
Q ss_pred HHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhC
Q 004860 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (727)
Q Consensus 416 ~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~ 495 (727)
+.+++.|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 253 LGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 99999999999986 46888999999999999999999999999988766677899999999999999999999998887
Q ss_pred CCCcccccccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccc
Q 004860 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (727)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~ 569 (727)
+...++|.||+||+++.++.... .....+++|+|+++++++|+| ++++++|.|+. |||+| +.||+++
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~---- 404 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNN---- 404 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETTC----
T ss_pred CCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchhhcCC----
Confidence 65569999999999976554433 334567899999999999999 57999999996 99999 3566653
Q ss_pred cccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCC
Q 004860 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (727)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~ 649 (727)
++.|+..|.. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++
T Consensus 405 --~~~t~~~~~~------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~ 475 (550)
T 3rix_A 405 --PEATNALIDK------DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDD 475 (550)
T ss_dssp --HHHHHHHBCT------TSCEEEEEEEEECTTCCEEEC-----------------------------------------
T ss_pred --hhhhhhhcCC------CCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEeecC
Confidence 4466666643 239999999999999999999999999999999999999999995 9999999999999998
Q ss_pred CCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCccc-ceEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 650 ~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P-~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
..+ +.++++|+++++...+.++++++ ++++|++|+.| ..|+++++||+|+||||||++|++++.+..+.
T Consensus 476 ~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 476 DAG-ELPAAVVVLEHGKTMTEKEIVDY----VASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCC-ceEEEEEEecCCCCCCHHHHHHH----HHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccc
Confidence 888 89999999988766655555554 66778887655 57999999999999999999999999766543
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.5e-75 Score=659.54 Aligned_cols=495 Identities=23% Similarity=0.264 Sum_probs=392.0
Q ss_pred ccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 004860 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (727)
Q Consensus 173 ~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~l 251 (727)
.|.....+.+++ + +||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|
T Consensus 23 ~~~~~~~l~~~~--~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 23 FNFAAYLFRLNE--T-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCHHHHHHHHTG--G-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred eeHHHHHHHhhh--c-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 344445555444 6 999999998765 999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC---CcEEEEcCCCCCCCCCCCcC
Q 004860 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQ 328 (727)
Q Consensus 252 A~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~ 328 (727)
||+++|++++|++|.++.+++.+++++++++++|+++... +.........+ ..++++..... ....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----cccc
Confidence 9999999999999999999999999999999999987542 11222222111 22222221110 0001
Q ss_pred cccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHH-HHHHHhhchhcCCCCCCEEEEecccc
Q 004860 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLG 407 (727)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (727)
...|+++...... ........+++++||+|||||||.||||+++|+++ .+........+++.++|++++.+|++
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 161 APLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTT
T ss_pred ccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHH
Confidence 2246666543221 11223456799999999999999999999999999 66666666678899999999999999
Q ss_pred cccchH-HhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChh
Q 004860 408 WVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (727)
Q Consensus 408 ~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~ 486 (727)
|+++++ .++.+|..|+++++.+...++..+++.|+++++|++.++|+++..|+...........+||.+++|||+++++
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~ 315 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPRE 315 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHH
Confidence 999985 4678999999999886567889999999999999999999999999876543332124899999999999999
Q ss_pred hHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecc
Q 004860 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPL 561 (727)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~ 561 (727)
+.+++.+.+ +++++|.||+||++.+++..... ....+++|+|+++++++|+|++|+++|.|+. |||+| +.|
T Consensus 316 ~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g 391 (529)
T 2v7b_A 316 IGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM 391 (529)
T ss_dssp HHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC
T ss_pred HHHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc
Confidence 999888776 68999999999997654443322 2456789999999999999999999999996 99999 345
Q ss_pred cCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceee
Q 004860 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 641 (727)
Q Consensus 562 y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a 641 (727)
|++ +++.+...|.+ +||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|
T Consensus 392 Y~~------~~~~t~~~f~~-------~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~ 457 (529)
T 2v7b_A 392 YWN------NREKSRATFLG-------EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEA 457 (529)
T ss_dssp BTT------CHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEE
T ss_pred cCC------ChHHHHHhhhc-------CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceE
Confidence 555 34466666641 39999999999999999999999999999999999999999995 99999999
Q ss_pred EEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 642 AAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 642 ~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
+|++. ++..+ +.++++|++.++...+ +.+.+.|+++++++||+|++|..|+++++||+|+|||++|++|++
T Consensus 458 ~vv~~-~~~~~-~~~~a~vv~~~~~~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 458 AVVGV-DHGGL-VKTRAFVVLKREFAPS-EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEE-EETTE-EEEEEEEEECTTCCCC-HHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEe-cCCCc-eEEEEEEEecCCCCcc-hhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 99998 55555 8899999988754322 335567888899999999999999999999999999999999985
No 25
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.5e-77 Score=670.84 Aligned_cols=483 Identities=16% Similarity=0.137 Sum_probs=303.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 16 a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 16 AALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVN 87 (509)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecC
Confidence 478999999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|++.... ..........+....++.... ....+.++......
T Consensus 88 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--- 149 (509)
T 3ivr_A 88 YRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD--- 149 (509)
T ss_dssp TTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC---
T ss_pred CCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC---
Confidence 999999999999999999999987542 111111222222211211111 11122222221111
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
.........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++.+++.|++
T Consensus 150 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~ 228 (509)
T 3ivr_A 150 -TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA 228 (509)
T ss_dssp -SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred -CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCc
Confidence 1122334578999999999999999999999999999999988889999999999999999999999887777777777
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
.++.. ..++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++ +..+.+...+++++++|.|
T Consensus 229 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y 302 (509)
T 3ivr_A 229 SVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATF 302 (509)
T ss_dssp EEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred EEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence 77766 678899999999999999999999999998875 44568899999999987 6677788888889999999
Q ss_pred cccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccc
Q 004860 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (727)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f 579 (727)
|+||++++++..... ....++|+|++|++++|+|++++++|.|+. |||+| +.||++ +++.|+..|
T Consensus 303 G~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~t~~~f 372 (509)
T 3ivr_A 303 GQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKGYWN------NAAATQHAF 372 (509)
T ss_dssp EEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCEETT------CHHHHHHHT
T ss_pred CccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------CHHHhHHHh
Confidence 999998765543322 223459999999999999999999999996 99999 355655 344666677
Q ss_pred cccccCCCceeeeeCceEEEecCceEEEEeec--CCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA--DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~--dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
. .+||+|||+|++++||+++|+||+ ||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 373 ~-------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 443 (509)
T 3ivr_A 373 R-------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EAIK 443 (509)
T ss_dssp G-------GGSEEEEEEEEECTTSCEEEEEEC------------------------------------------------
T ss_pred h-------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cEEE
Confidence 4 239999999999999999999999 999999999999999999995 9999999999999998877 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
++|+++++...+.++++ ++++++||+||+|..|+++++||+|+||||||++|++++.+.-.+.
T Consensus 444 a~v~~~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 444 AVCVCKPGESIAADALA----EFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEeCCCCCCCHHHHH----HHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 99998877655555554 4577889999999999999999999999999999999998765543
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.2e-75 Score=653.04 Aligned_cols=459 Identities=20% Similarity=0.222 Sum_probs=362.2
Q ss_pred CCCCCCC-ceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++|+ ++|+++.++ ++||+||+++++++|++|. .|++|+|+++|++++++++|||+++|+++|||
T Consensus 31 ~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl 98 (505)
T 3nyq_A 31 APTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98 (505)
T ss_dssp CCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEc
Confidence 3467776 999999877 9999999999999998775 48999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
||.+|.+++.+++++++++++|++.... .. ..... ...+.+...
T Consensus 99 ~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~---~~~~~--~~~~~~~~~-------------------------- 142 (505)
T 3nyq_A 99 NPKSGDKELAHILSDSAPSLVLAPPDAE-----LP---PALGA--LERVDVDVR-------------------------- 142 (505)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC---GGGTT--SEEEECCTT--------------------------
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCccc-----cc---hhhcc--ccccccccc--------------------------
Confidence 9999999999999999999999986421 00 00000 001111000
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcC
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G 422 (727)
.....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|..++ +.++.+|..|
T Consensus 143 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 143 ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 000111233467899999999999999999999999999999988888999999999999999998887 5689999999
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCC---CCCCccceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~---~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
+++++.+ ..++..+++.+ ++++|+++++|+++..|.+.... ...+++++|.+++|||+++++..+++...+ +++
T Consensus 223 ~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~ 299 (505)
T 3nyq_A 223 GSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRR 299 (505)
T ss_dssp CEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCC
T ss_pred CEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCe
Confidence 9999885 56778888888 88999999999999999874221 123467899999999999999988887765 689
Q ss_pred ccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCC---CCCeeeeEEE-----ecccCCCCccccc
Q 004860 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD---DQPCVGEVGL-----FPLYLGASDRLLN 571 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~---G~~giGel~v-----~~~y~~~~~~~~~ 571 (727)
++|.||+||+++.++.. .......+++|+|++|++++|+|++|++++. |+. |||+| +.||++ +
T Consensus 300 ~~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~ 370 (505)
T 3nyq_A 300 VIERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTEYLN------R 370 (505)
T ss_dssp CEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCEETT------C
T ss_pred eecccchhhcccccccC-CCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhhhCC------C
Confidence 99999999998755443 3334456789999999999999999999886 774 99998 456665 3
Q ss_pred cccccccccccccCCCceeeeeCceEEEecCceEEEEeec-CCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCC
Q 004860 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (727)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~-dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~ 650 (727)
++.|++.|..+ +||+|||+|++++||+|+|+||+ ||+||++|+||+|.|||++|. +||+|.+|+|++.+++.
T Consensus 371 ~~~t~~~f~~~------g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~ 443 (505)
T 3nyq_A 371 PDATAAAFTED------GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEPDPD 443 (505)
T ss_dssp HHHHHHTBCTT------SCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETT
T ss_pred hhHhhhhhcCC------CCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEeeECCC
Confidence 44677777643 39999999999999999999998 699999999999999999995 99999999999999988
Q ss_pred CCceEEEEEEEecCC-CCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 651 GGPEVLVIFVVLKKG-FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 651 ~~~~~l~a~vv~~~~-~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
.+ +.++|||++.++ ...+.++++ ++++++||+||+|+.|+++++||+|+||||||++|++
T Consensus 444 ~g-~~l~a~vv~~~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 444 LG-ERIVAWIVPADPAAPPALGTLA----DHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TE-EEEEEEEEESSTTSCCCHHHHH----HHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CC-cEEEEEEEECCCCCCCCHHHHH----HHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 88 999999999863 344545554 4577889999999999999999999999999999986
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.5e-74 Score=641.58 Aligned_cols=483 Identities=17% Similarity=0.197 Sum_probs=364.2
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+|+++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 3478999999998776 999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|++...............+ ............ . .......+............
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI----EFAGRDITTNGL-L---DNTMGIQYDTSNETVVPKES 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC----------------------------------------CC
T ss_pred ccCCHHHHHHHHHhcCCCEEEEccccccccccccccccc----eeeeeecccccc-c---ccccccccccchhhccccCC
Confidence 999999999999999999999987644222111000000 000000000000 0 00000000000000000000
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
..........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+++.|++
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 231 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCce
Confidence 00011223567999999999999999999999999999999888888999999999999999999999889999999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+++.+ ..++..+++.|+++++|++.++|++++.|.+...... .+||.+++|||++++++.+++.+. +++++|.|
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~Y 305 (501)
T 3ipl_A 232 VRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSF 305 (501)
T ss_dssp EEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccc
Confidence 99987 4688999999999999999999999999988754332 289999999999999998888763 78999999
Q ss_pred cccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccccccc
Q 004860 505 GGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (727)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~ 578 (727)
|+||+++.++..... .....+++|+|+++++++|+|++ .|+ +|||+| +.||++.+ +.+..
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~--~GEl~v~g~~~~~gY~~~~------~~t~~- 371 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEG--HGELMIKGANVMNGYLYPT------DLTGT- 371 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSC--CEEEEEESTTSCSCCSBST------TCCCS-
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCC--ccEEEEeccchhhhhCcCh------hhcch-
Confidence 999998654443321 12345789999999999999976 344 399998 45666533 34443
Q ss_pred ccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEE
Q 004860 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (727)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a 658 (727)
|. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.+++
T Consensus 372 ~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a 442 (501)
T 3ipl_A 372 FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKL 442 (501)
T ss_dssp EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEE
Confidence 32 239999999999999999999999999999999999999999995 9999999999999998888 89999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+++... ..+.+++++ +++++||+||+|..|+++++||+|+||||||++|++...+.
T Consensus 443 ~v~~~~--~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 443 YFVSES--DISKAQLIA----YLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEESS--CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEEeCC--CCCHHHHHH----HHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 998753 345555555 57788999999999999999999999999999999877654
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=7.8e-74 Score=650.45 Aligned_cols=487 Identities=18% Similarity=0.199 Sum_probs=296.0
Q ss_pred CCCCCCceEEEEecC--CCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEee
Q 004860 186 RRKEDNTVAIVWRED--RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 186 a~~~pd~~Al~~~~~--~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vp 262 (727)
|+++||++|+++.+. +......+++||+||+++++++|++|.+. + +||+|+|+++|++++++++|||+|+|+++||
T Consensus 30 a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 30 AKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVP 108 (562)
T ss_dssp HHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 478999999998652 01112335899999999999999999999 8 7999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.......
T Consensus 109 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~~~~~~~- 165 (562)
T 3ite_A 109 IEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIENLSTQDT- 165 (562)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHHHHHSCC-
T ss_pred cCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhhcccccc-
Confidence 999999999999999999999999875321110 0111111110 11123333222211
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch--------hcCCCCCCEEEEecccccccchHH
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA--------HIDLKVGDVYCWPTNLGWVMGPVI 414 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~~~~~~~~~~~~ 414 (727)
........+++++||+|||||||.||||+++|+++.+.+.+... .+.+...+++++.+++.|+.+++.
T Consensus 166 ----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (562)
T 3ite_A 166 ----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE 241 (562)
T ss_dssp ----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH
T ss_pred ----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH
Confidence 11122345788999999999999999999999999887665433 355788999999999999999999
Q ss_pred hHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhh
Q 004860 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (727)
Q Consensus 415 ~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~ 494 (727)
++.++..|+++++.+....+..+.+.|+++++|++.++|++++.+.. ...++++||.+++|||++++++.+++...
T Consensus 242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----~~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 317 (562)
T 3ite_A 242 MFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDAPHLVYLGVGGEKMTPRTQQIWSSS 317 (562)
T ss_dssp HHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----CGGGSTTCCEEEEESSCCCHHHHHHHTTC
T ss_pred HHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----CccccCceEEEEEecCCCCHHHHHHHhhC
Confidence 99999999999987643345678899999999999999999988743 24467899999999999999998888764
Q ss_pred CCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECC-CCCcCCCCCCeeeeEEE-----ecccCCCCcc
Q 004860 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (727)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v-----~~~y~~~~~~ 568 (727)
++++++|.||+||+++.++..........+++|+|+++++++|+|+ .++++|.|+. |||+| +.||+++++
T Consensus 318 -~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~p~- 393 (562)
T 3ite_A 318 -DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANGYLNRPD- 393 (562)
T ss_dssp -SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCEESSCTT-
T ss_pred -CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchhhCCCcc-
Confidence 4789999999999987655544444455678999999999999995 5888999996 99999 456666443
Q ss_pred ccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcC-CCceeeEEEeec
Q 004860 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-ESILETAAISVS 647 (727)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~-p~V~~a~vv~~~ 647 (727)
.++..+ .+|.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +| |.|.+++|++.+
T Consensus 394 -----~t~~~~-----~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~~ 462 (562)
T 3ite_A 394 -----AKGFCD-----INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLLN 462 (562)
T ss_dssp -----CCSEEE-----ETTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------
T ss_pred -----cccccc-----CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEec
Confidence 333222 246789999999999999999999999999999999999999999996 66 888899888888
Q ss_pred CCCCCceEEEEEEEecCCCCCC---------hHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCC-CCchhhHHHHHHHH
Q 004860 648 PAGGGPEVLVIFVVLKKGFTSQ---------PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT-ASNKLLRRVLRDQI 717 (727)
Q Consensus 648 ~~~~~~~~l~a~vv~~~~~~~~---------~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t-~~GKvdR~~L~~~~ 717 (727)
++..+ +..+++++...+.... .+.+.+.|+++++++||+||+|+.|+++++||+| +|||+||++|++++
T Consensus 463 ~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~ 541 (562)
T 3ite_A 463 HPGTS-KQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMF 541 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCc-ceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHH
Confidence 88777 5555544444332211 1233456777888999999999999999999998 99999999999998
Q ss_pred hhh
Q 004860 718 KHE 720 (727)
Q Consensus 718 ~~~ 720 (727)
++.
T Consensus 542 ~~~ 544 (562)
T 3ite_A 542 HTL 544 (562)
T ss_dssp ---
T ss_pred hcc
Confidence 654
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.8e-72 Score=643.79 Aligned_cols=492 Identities=15% Similarity=0.129 Sum_probs=386.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
|+++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 21 a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 21 ALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp HHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEec
Confidence 478999999998642 1234999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCC---CHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhccc
Q 004860 265 DSF---AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (727)
Q Consensus 265 p~~---~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (727)
|.+ +.+++.++++++++++++++.......... .....+. ...++. .+.+....
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------------~~~~~~~~ 155 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD-----ELNTNPKFLKIPAIA----------------LESIELNR 155 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC----------CCEETTEEEEE----------------GGGCCGGG
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHh-----hhhhcccccccceee----------------chhccccc
Confidence 988 457899999999999999987532110000 0000000 011110 11110000
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHH-hHHh
Q 004860 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSS 418 (727)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~ 418 (727)
. .........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+++++. ++.+
T Consensus 156 ~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 230 (590)
T 3kxw_A 156 S-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTP 230 (590)
T ss_dssp G-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHH
T ss_pred c-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHH
Confidence 0 011223456799999999999999999999999999999999888999999999999999999999876 8899
Q ss_pred hhcCcEEEEecCCC---ChhhHHHHHHHhCCCEEEechHHHHHHHhc---CCCCCCCccceeEEEeecCCCChhhHHHHH
Q 004860 419 FLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (727)
Q Consensus 419 l~~G~~lv~~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~---~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~ 492 (727)
++.|+++++.+... ++..+++.|+++++|++.++|+++..+.+. ......++++||.+++|||++++++.+++.
T Consensus 231 l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~ 310 (590)
T 3kxw_A 231 IYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFY 310 (590)
T ss_dssp HHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHH
Confidence 99999999986422 678899999999999999999999998775 223456789999999999999999998888
Q ss_pred hhCC-----CCcccccccccccccccccCCCC--------------------------CCccccccccCCCCceEEEECC
Q 004860 493 SKAW-----YNAIIESCGGTELSSAYIQGSLL--------------------------QPQAFGAFSTATMTAGLVILDE 541 (727)
Q Consensus 493 ~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~~~vld~ 541 (727)
+.++ +++++|.||+||++++++..... .....+++|+|+++ ++|+|+
T Consensus 311 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~ 388 (590)
T 3kxw_A 311 QAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDP 388 (590)
T ss_dssp HHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECT
T ss_pred HHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcC
Confidence 7753 45799999999999766543211 11234688999998 889997
Q ss_pred C-CCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccC--CCceeeeeCceEEEecCceEEEEeecCC
Q 004860 542 C-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADD 613 (727)
Q Consensus 542 ~-~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~--~g~~~yrTGDl~~~~~dG~l~~~GR~dd 613 (727)
+ ++++|.|+. |||+| +.||++ +++.|++.|..++.. .|.+||+|||+|+++ ||+|+|+||+||
T Consensus 389 ~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd 459 (590)
T 3kxw_A 389 DTLIPCDFDQV--GEIWVQSNSVAKGYWN------QPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKD 459 (590)
T ss_dssp TTCCBCCTTBC--EEEEEESTTSCCCBTT------CHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSC
T ss_pred CCCcCCCCCCE--EEEEEeCCcccccccC------ChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccc
Confidence 7 999999986 99999 456665 445778888765543 255699999999999 999999999999
Q ss_pred eeecCceeechHHHHHHHhhcCCCce--eeEEEeecCCCCCceEEEEEEEecCCC--CCChHHHHHHHHHHHHhhcCCCc
Q 004860 614 TMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQSKLNPLF 689 (727)
Q Consensus 614 ~ik~~G~ri~~~eIE~~l~~~~p~V~--~a~vv~~~~~~~~~~~l~a~vv~~~~~--~~~~~~l~~~l~~~l~~~L~~~~ 689 (727)
+||++|+||+|.|||++|...||+|. +|+|++++++. + +.++++++++++. ..+.+++.++|+++|.+.+...+
T Consensus 460 ~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~ 537 (590)
T 3kxw_A 460 LIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEV 537 (590)
T ss_dssp HHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred eEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCce
Confidence 99999999999999999944899998 78999988765 4 7899999988753 23445666666666654332222
Q ss_pred ccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 690 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 690 ~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
.+..++.+++||+|+||||||++|++++.+.
T Consensus 538 ~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 538 HTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp CEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 2334555589999999999999999998654
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.1e-70 Score=620.83 Aligned_cols=482 Identities=17% Similarity=0.187 Sum_probs=378.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++|+.+++.... +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 31 a~~~p~~~~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 105 (576)
T 3gqw_A 31 ALSSAGMNFYDRRC-----QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLA 105 (576)
T ss_dssp TTSSCEEEEECTTS-----CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhCCCCeEEeCCCC-----CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeecC
Confidence 46889988775321 1224899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC-------HHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhc
Q 004860 265 DSFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (727)
Q Consensus 265 p~~~-------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 337 (727)
+.++ .+++.+++++++++++|+++... +.........+....+. ..+.+..
T Consensus 106 ~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~~~~~- 163 (576)
T 3gqw_A 106 IPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNAATHDNPELHVLS---------------HAWFKAL- 163 (576)
T ss_dssp CCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHHHGGGCTTCEEEE---------------HHHHHTS-
T ss_pred CCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHHhhccCCcceecc---------------hhhhhcc-
Confidence 9999 89999999999999999987532 11122221121111110 0111111
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh-cCCCCCCEEEEecccccccchHH-h
Q 004860 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVI-L 415 (727)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~-~ 415 (727)
.. .........+++++||+|||||||.||||+++|+++++.+.+.... ++++++|++++.+|++|+++++. +
T Consensus 164 --~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 237 (576)
T 3gqw_A 164 --PE----ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFL 237 (576)
T ss_dssp --CC----CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHT
T ss_pred --cc----cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHH
Confidence 11 0112223457999999999999999999999999999888776544 78999999999999999999865 6
Q ss_pred HHhhhcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC---CCCCCccceeEEEeecCCCChhhHH
Q 004860 416 FSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDDL 489 (727)
Q Consensus 416 ~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~---~~~~~l~~Lr~i~~gGe~l~~~~~~ 489 (727)
+.++..|+++++.+.. .++..+++.|+++++|++.++|+++..+.+... ....++++||.+++|||+++++..+
T Consensus 238 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~ 317 (576)
T 3gqw_A 238 LTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLH 317 (576)
T ss_dssp HHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHH
Confidence 7788999999887531 367889999999999999999999988866432 2455689999999999999999998
Q ss_pred HHHhhCC-----CCcccccccccccccccccCCCCCC---------------------------ccccccccCCCCceEE
Q 004860 490 WLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGLV 537 (727)
Q Consensus 490 ~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~~~~~~ 537 (727)
++.+.++ +++++|.||+||++++++....... ....++|+|+++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 397 (576)
T 3gqw_A 318 QFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIE 397 (576)
T ss_dssp HHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEE
T ss_pred HHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEE
Confidence 8887764 6789999999999976654432110 1123799999999999
Q ss_pred EECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecC
Q 004860 538 ILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 612 (727)
Q Consensus 538 vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d 612 (727)
|+|++|+++|.|+. |||+| +.||++++ +.++..+. .+||+|||+|++ +||+|+|+||+|
T Consensus 398 i~d~~g~~~~~g~~--GEl~v~g~~~~~gY~~~~------~~~~~~~~-------~g~~~TGDl~~~-~dG~l~~~GR~d 461 (576)
T 3gqw_A 398 IRNEAGMPVAERVV--GHICISGPSLMSGYFGDQ------VSQDEIAA-------TGWLDTGDLGYL-LDGYLYVTGRIK 461 (576)
T ss_dssp EECTTSCBCCTTBC--EEEEEESTTSCCCBTTCH------HHHHHHHH-------HSCEEEEEEEEE-ETTEEEEEEETT
T ss_pred EECCCCCCCCCCCe--EEEEEeCccccccccCCc------cccccccC-------CCeeeccceEEE-ECCEEEEEecCc
Confidence 99999999999996 99999 35565532 23333332 239999999999 799999999999
Q ss_pred CeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhc-CCCccc
Q 004860 613 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL-NPLFKV 691 (727)
Q Consensus 613 d~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L-~~~~~P 691 (727)
|+||++|+||+|.|||++|. +||+|.+++|++..+... .++++++...+. +...+.+++.+++.| +.|++|
T Consensus 462 d~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~~~~~~---~~~~~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~p 533 (576)
T 3gqw_A 462 DLIIIRGRNIWPQDIEYIAE-QEPEIHSGDAIAFVTAQE---KIILQIQCRISD----EERRGQLIHALAARIQSEFGVT 533 (576)
T ss_dssp TCEEETTEEECHHHHHHHHT-TSSSCCTTSEEEEECTTS---CEEEEEECCCCC----HHHHHHHHHHHHHHHHHHHSCC
T ss_pred ceEEECCEEECHHHHHHHHH-hCcccccccEEEEEcCCc---cEEEEEEEecCc----hhHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999995 999999999988877543 355555544322 333444555566666 578999
Q ss_pred ceEEEcC--CCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 692 SLVKVVP--EFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 692 ~~i~~v~--~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
..+.+++ +||+|+|||+||++|++++++.+...
T Consensus 534 ~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~ 568 (576)
T 3gqw_A 534 AAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAAS 568 (576)
T ss_dssp EEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHTCC
T ss_pred eeEEEECCCCcCcCCCccchHHHHHHHHHHHhhhc
Confidence 9888887 99999999999999999998876653
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.8e-57 Score=502.44 Aligned_cols=383 Identities=16% Similarity=0.143 Sum_probs=296.9
Q ss_pred CCCCCCceEEEEecCC-CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++++||++|+++.+.. ...+..+++||+||+++++++|++|+++ + +||+|+|+++|++++++++|||+++|+++|||
T Consensus 34 a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 34 ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp HHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEee
Confidence 4789999999987621 1123346999999999999999999999 8 99999999999999999999999999999999
Q ss_pred CC---CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc-----EEEEcCCCCCCCCCCCcCcccHHHH
Q 004860 264 AD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-----AIVLPAIGNDVGIPLREQDLSWKDF 335 (727)
Q Consensus 264 ~p---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~ 335 (727)
++ .++.+++.+++++++++++|+++... ..+.+..... ..++. ++..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~----------------~~~~ 167 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRPGESPPSIIE----------------VDLL 167 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC------CCEEEE----------------GGGS
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccccccccceeE----------------eccc
Confidence 99 88899999999999999999987532 1221111100 01110 0000
Q ss_pred hcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCC------CCEEEEecccccc
Q 004860 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWV 409 (727)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~~~~~~ 409 (727)
... ...........+++++||+|||||||.||||+++|+++++.+.+....+++.+ +|++++.+|++|+
T Consensus 168 ~~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 242 (480)
T 3t5a_A 168 DLD-----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242 (480)
T ss_dssp CTT-----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTST
T ss_pred ccc-----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCc
Confidence 000 01111223456789999999999999999999999999998888878888877 9999999999999
Q ss_pred cch-HHhHHhhhcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhc----CCCCCCCccceeEEEeecC
Q 004860 410 MGP-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGE 481 (727)
Q Consensus 410 ~~~-~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~~~~~~~l~~Lr~i~~gGe 481 (727)
+++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +.++|+++..++.. ......++++||.+++|||
T Consensus 243 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~ 321 (480)
T 3t5a_A 243 MGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSE 321 (480)
T ss_dssp THHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCT
T ss_pred cHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCC
Confidence 996 5689999999999998643 3778999999999999 78889988887753 2334567899999999999
Q ss_pred CCChhhHHHHHhhC-----CCCcccccccccccccccccCCCCC------------------------CccccccccCCC
Q 004860 482 TSNVDDDLWLSSKA-----WYNAIIESCGGTELSSAYIQGSLLQ------------------------PQAFGAFSTATM 532 (727)
Q Consensus 482 ~l~~~~~~~~~~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~~ 532 (727)
++++++.+++.+.+ ++++++|.||+||+++.++...... ....+++|+|++
T Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~ 401 (480)
T 3t5a_A 322 RVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS 401 (480)
T ss_dssp TCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS
T ss_pred cCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC
Confidence 99999999988876 3467999999999998665544321 123468999999
Q ss_pred CceEEEECCC-CCcCCCCCCeeeeEEE-----ecccCCCCcccccccccccccccccc-----CCCceeeeeCceEEEec
Q 004860 533 TAGLVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-----YKGMCLRRHGDIIKRTV 601 (727)
Q Consensus 533 ~~~~~vld~~-~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~-----~~g~~~yrTGDl~~~~~ 601 (727)
++++|+|++ |+++|.|+. |||+| +.||++ +++.|++.|..++. .++.+||||||+|+++
T Consensus 402 -~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d- 471 (480)
T 3t5a_A 402 -PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQ------KPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT- 471 (480)
T ss_dssp -SEEEEEETTTTEECCTTBC--EEEEEESTTSCCCBTT------BHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-
T ss_pred -CEEEEEcCCCCcCCCCCCE--EEEEEeCCcccccccc------CcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-
Confidence 999999976 899999996 99999 456665 44577777864332 2356799999999997
Q ss_pred CceEEEEee
Q 004860 602 GGYIIVQGR 610 (727)
Q Consensus 602 dG~l~~~GR 610 (727)
||+|+|+||
T Consensus 472 dG~l~~~GR 480 (480)
T 3t5a_A 472 DGKMFIIGR 480 (480)
T ss_dssp TTEEEECC-
T ss_pred CCEEEEeCC
Confidence 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.5e-56 Score=474.11 Aligned_cols=317 Identities=17% Similarity=0.132 Sum_probs=267.0
Q ss_pred CCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCCh
Q 004860 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (727)
Q Consensus 355 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~ 434 (727)
.|++|||+|||||||.||||++||+++++.+.+....++++++|++++.+|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 3789999999999999999999999999999998889999999999999999999999989999999999999875443
Q ss_pred hhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccc
Q 004860 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 514 (727)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (727)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999988754 34578999999999999999999888764 689999999999987554
Q ss_pred cCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceeeeeC
Q 004860 515 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG 594 (727)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTG 594 (727)
... ......+.+|.+.||+.+.+.+. ||+++...+. ..+||+||
T Consensus 190 ~~~-~~~~~~g~~~~~~pgv~~~~~~~------------Gel~~~g~~~-----------------------~~g~~~TG 233 (358)
T 4gs5_A 190 LKA-LNGPEASELYVFLPGIQYGVDER------------GCLHISGAVT-----------------------NGQTVQTN 233 (358)
T ss_dssp EEE-CSSTTCCSCEEECTTCEEEECTT------------SEEEEESGGG-----------------------TTCCEEEE
T ss_pred ccc-ccccccceeeccCCCeEEEecCc------------CceEEecccc-----------------------cCcceecC
Confidence 432 23344577889999988776432 8887743211 12399999
Q ss_pred ceEEEecCceEEEEeecCCeeecCceeechHHHHHHHh--hcCCCceeeEEE-eecCCCCCceEEEEEEEecCCCCCChH
Q 004860 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD--QADESILETAAI-SVSPAGGGPEVLVIFVVLKKGFTSQPD 671 (727)
Q Consensus 595 Dl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~--~~~p~V~~a~vv-~~~~~~~~~~~l~a~vv~~~~~~~~~~ 671 (727)
|+|++|+|| ++|+||+||+||++|+||+|.|||++|. ..||+|.+|+|+ +.+++..| +.++++|+...+ +
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~~-----~ 306 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAMP-----E 306 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCCC-----H
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCCC-----C
Confidence 999999998 6778999999999999999999998773 258999999886 56777777 899999886543 4
Q ss_pred HHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 672 KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 672 ~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
...+.|+++++++||+||+|+.|+++++||+|+||||||++|++++++.
T Consensus 307 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 307 ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 4556677788899999999999999999999999999999999988664
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.3e-49 Score=436.97 Aligned_cols=325 Identities=19% Similarity=0.217 Sum_probs=257.2
Q ss_pred cCCC-CCeEEEEeCCCCCCCCCeEEecChHHHHHHHhh---chhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEE
Q 004860 352 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (727)
Q Consensus 352 ~~~~-~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv 426 (727)
..++ +++++|+|||||||.||||+++|+++.+...+. ...+++.++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 334689999999999998755554 56788999999998
Q ss_pred EecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCC--CccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+.+ ..++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 876 45788999999999999999999999999876332333 378999999999999999999988876 68999999
Q ss_pred cccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccc
Q 004860 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (727)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p 583 (727)
|+||+++.++..... .....|.|.+++.++|+| ++|+++|.|+. |||+|... ++..| |
T Consensus 239 G~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~-------------~~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTL-------------DREMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEES-------------SCCSS---C
T ss_pred cchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEecc-------------CcCCc---e
Confidence 999996432222111 112356788899999999 78999999996 99999541 11122 1
Q ss_pred cCCCceeeeeCceEEEecCc------e---EEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCce
Q 004860 584 MYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (727)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~dG------~---l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~ 654 (727)
..||+|||+|++++|| + ++|+||+||+||++|+||+|.|||++|. +||+|.+++|++.+++..+ +
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~ 371 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D 371 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence 1289999999999998 5 6999999999999999999999999995 9999999999999887766 8
Q ss_pred EEEEEEEecCCCCCC----hHHHHHHHHHHHHhhcCCC-cccceEEEcC--CCCCCCCchhhHH
Q 004860 655 VLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPL-FKVSLVKVVP--EFPRTASNKLLRR 711 (727)
Q Consensus 655 ~l~a~vv~~~~~~~~----~~~l~~~l~~~l~~~L~~~-~~P~~i~~v~--~lP~t~~GKvdR~ 711 (727)
.++++|+++ +...+ .++++++|+ +.|+.+ ++|..+++++ +||+|+ ||++|.
T Consensus 372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~----~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 372 EMIVEVELS-DLSTDNYIELEKIRRDII----RQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEEC-TTCCCCHHHHHHHHHHHH----HHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEEc-CccccchhhHHHHHHHHH----HHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 999999998 65544 345555554 445555 7888899998 999999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=9.9e-49 Score=430.84 Aligned_cols=331 Identities=18% Similarity=0.172 Sum_probs=260.5
Q ss_pred cCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhc---hhcCCCCCCEEEEecccc-cccchHHhHHhhhcCcEEEE
Q 004860 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLAL 427 (727)
Q Consensus 352 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~~~~~l~~G~~lv~ 427 (727)
..+++++++|+|||||||.||||+++|+++.+...... ..++++++|++++..|++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999877554332 367899999999999985 56666667899999999988
Q ss_pred ecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCC--ccceeEEEeecCCCChhhHHHHHhhCCCCccccccc
Q 004860 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (727)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (727)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 764 47889999999999999999999999998753222232 47999999999999999999888776 689999999
Q ss_pred ccccccc-cccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccc
Q 004860 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (727)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p 583 (727)
+||+++. +....... ....+.|.+++.++|+| ++|+++|.|+. |||+|... ++..| |
T Consensus 246 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVET---KDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTTT---CCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCCC---CCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9997432 22211111 11245577899999999 46999999996 99998631 11223 2
Q ss_pred cCCCceeeeeCceEEEecC-ceE-----EEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 584 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~d-G~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
..||+|||+|++++| |++ +|+||+||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 128999999999999 987 899999999999999999999999995 9999999999988876666 8899
Q ss_pred EEEEecC--CCCCChHHHHHHHHHHHHhhcCCCc-ccceEEEc--CCCCCCCCchhhHHH
Q 004860 658 IFVVLKK--GFTSQPDKLKMIFSKAIQSKLNPLF-KVSLVKVV--PEFPRTASNKLLRRV 712 (727)
Q Consensus 658 a~vv~~~--~~~~~~~~l~~~l~~~l~~~L~~~~-~P~~i~~v--~~lP~t~~GKvdR~~ 712 (727)
++|++++ +...+ ..-.+.+++.|+++|+.|+ +|..+.++ ++||+|+|||++|+.
T Consensus 379 a~v~~~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 379 LAVELRSEAAASVT-DGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp EEEEECHHHHTTCC-HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred EEEEECCcccccch-hhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 9999875 32111 1112334445566666664 77777777 599999999999864
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3.5e-48 Score=425.67 Aligned_cols=330 Identities=18% Similarity=0.170 Sum_probs=261.4
Q ss_pred cCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhc---hhcCCCCCCEEEEeccc-ccccchHHhHHhhhcCcEEEE
Q 004860 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 427 (727)
Q Consensus 352 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~l~~G~~lv~ 427 (727)
..+++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34668999999999999999999999999876654332 35789999999999998 466666668899999999987
Q ss_pred ecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCC--ccceeEEEeecCCCChhhHHHHHhhCCCCccccccc
Q 004860 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (727)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (727)
.+. .++..+++.|+++++|++.++|+++..|.+.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 653 47889999999999999999999999998753222222 47999999999999999999888776 689999999
Q ss_pred ccccccc-cccCCCCCCccccccccCCCCceEEEECC-CCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccc
Q 004860 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (727)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p 583 (727)
+||+++. +....... ....+.|.+++.++|+|+ +|+++|.|+. |||+|... ++..| |
T Consensus 244 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~-------------t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVET---KDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTSL-------------TKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTTT---CSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeeEEecCCC---CCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEecC-------------CcCCc---h
Confidence 9998432 22222211 112556778999999995 5999999996 99998531 12223 1
Q ss_pred cCCCceeeeeCceEEEec-CceE-----EEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 584 MYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~-dG~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
..||+|||+|++++ ||++ +|+||+||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 12899999999999 6986 899999999999999999999999995 9999999999998876666 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCc-ccceEEEc--CCCCCCCCchhhHHH
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF-KVSLVKVV--PEFPRTASNKLLRRV 712 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~-~P~~i~~v--~~lP~t~~GKvdR~~ 712 (727)
++|+++++...+. .-.+.+++.+++.|+.|+ +|..+.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETAPDT-AAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTTTCH-HHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCccchh-hhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999887543211 112334445666667764 78888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=5e-32 Score=290.18 Aligned_cols=237 Identities=14% Similarity=0.060 Sum_probs=179.4
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhh---chhcCCCCCCEEEEeccc-ccccchHHhHHhhhcCcEEEEe
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 428 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~l~~G~~lv~~ 428 (727)
.+++++++|+|||||||+||||+++|+++.+...+. ...+++.++|++++..|+ .|+.++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467899999999999999999999999998887743 356788999999999999 88888887788899999 4444
Q ss_pred cCCCChh-----------------------hHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCCh
Q 004860 429 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 485 (727)
Q Consensus 429 ~~~~~~~-----------------------~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~ 485 (727)
. ..++. .++++|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 34555 77779999999999999999999987632223457899999999999999
Q ss_pred hhHHHHH-hhCCCCcccccccccccccccccCCCCCCccccccccC------CCCceEEEECC-CCCcCCCCCCeeeeEE
Q 004860 486 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEVG 557 (727)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~vld~-~~~~~p~G~~giGel~ 557 (727)
+..+++. +.+++++++|.||+||+++++..+.. .++|+| +++++++|+|+ +|+++|.|+. |||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEEE
Confidence 9999999 88878999999999999865432211 158899 99999999997 8999999996 9999
Q ss_pred EecccCCCCccccccccccccccccccCCCceeeeeCceEEEecC---------ceEEEEeecCCeeecCce
Q 004860 558 LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG---------GYIIVQGRADDTMNLGGI 620 (727)
Q Consensus 558 v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~d---------G~l~~~GR~dd~ik~~G~ 620 (727)
|.... +..|. + .|+|||++++.+. ..+..++|.|+++||.|.
T Consensus 318 vt~l~-------------~~~~l--~------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHLS-------------PWAFY--P------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEE-------------TTEEE--E------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEcC-------------ccccc--c------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 85321 11221 1 4999999988643 246678899999999885
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.61 E-value=8.4e-16 Score=132.53 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=75.2
Q ss_pred eecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCCh---HHHHHHHHHHHHhhc
Q 004860 609 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKL 685 (727)
Q Consensus 609 GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~---~~l~~~l~~~l~~~L 685 (727)
.|.|||||++|+||+|.|||++|. +||+|.++++++.+++.++ +.++++|+..++...+. +++.+.|++++++.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh
Confidence 489999999999999999999996 9999999999999988887 89999999988765543 445666666676655
Q ss_pred CCCcccceEEEc--CCCCCCCCchhhH
Q 004860 686 NPLFKVSLVKVV--PEFPRTASNKLLR 710 (727)
Q Consensus 686 ~~~~~P~~i~~v--~~lP~t~~GKvdR 710 (727)
. +|..+.++ ++||+| +||++|
T Consensus 79 g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 L---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp S---SCCEEEEECTTCSCCC----CCC
T ss_pred C---CccceEEEcCCeecCC-CCCcch
Confidence 3 34445555 589998 799977
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.58 E-value=2.7e-15 Score=129.05 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=76.5
Q ss_pred eecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCC----ChHHHHHHHHHHHHhh
Q 004860 609 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS----QPDKLKMIFSKAIQSK 684 (727)
Q Consensus 609 GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~----~~~~l~~~l~~~l~~~ 684 (727)
||.||+||++|++|+|.|||++|. .||+|.++++++.+++.++ +.+++++++ ++... +.+++.+.|++++++.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~-~~p~v~~~~~v~v~~~~~~-e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~ 77 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDE 77 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHH-hCCCcCCcEEEEEEcCCCc-eEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHh
Confidence 899999999999999999999996 8999999888888877665 899999998 65432 3467888888888776
Q ss_pred cCCCcccceEEEcC--CCCCCCCchhhHH
Q 004860 685 LNPLFKVSLVKVVP--EFPRTASNKLLRR 711 (727)
Q Consensus 685 L~~~~~P~~i~~v~--~lP~t~~GKvdR~ 711 (727)
+. ++..+.+++ +||+| +||++|.
T Consensus 78 ~~---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 78 IL---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HS---SCCEEEEECTTCSCCC----CCCE
T ss_pred hC---CceEEEEECCCCccCC-CCceEEE
Confidence 64 234788887 99999 9999873
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.87 E-value=2.5e-08 Score=109.53 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=39.3
Q ss_pred eeeCceEEEec----CceEEEEeecCCeeecCceeechHHHHHHHh
Q 004860 591 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (727)
Q Consensus 591 yrTGDl~~~~~----dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (727)
||+||++++.. ..++.|+||.+++++++|.+|...+||++|.
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVD 457 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHH
Confidence 89999999974 5789999999999999999999999999986
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.80 E-value=4.5e-08 Score=107.46 Aligned_cols=134 Identities=15% Similarity=0.088 Sum_probs=80.7
Q ss_pred ccc---eeEEEeecCCCChhhHHHHHhhCCCCccc-ccccccccccccccCCCCCCccccccccCCCCc-eEEEECCC--
Q 004860 470 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDEC-- 542 (727)
Q Consensus 470 l~~---Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld~~-- 542 (727)
+++ +.+++.||- ..-...++...++.+++ ..|+.||+...+-......+...+ -..+++. -...++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~--~~L~~~~~ffEFip~~~~ 370 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVS--YTFMPNMSYFEFIPMDGG 370 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCC--EEECTTSSEEEEEECSTT
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcccCc--eeecCCcEEEEEEecccc
Confidence 456 666667772 22234455555667776 999999964322111111111111 0122332 23344321
Q ss_pred --CC-----cCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceeeeeCceEEEec----CceEEEEeec
Q 004860 543 --GV-----PYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGRA 611 (727)
Q Consensus 543 --~~-----~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~----dG~l~~~GR~ 611 (727)
.+ .|..|+. +|++|+..- |-.-||+||++++.. ..++.|+||.
T Consensus 371 ~~~~~v~l~eVe~G~~--YelViTt~~------------------------GL~RYr~GD~v~v~~f~~~~p~i~f~gR~ 424 (581)
T 4eql_A 371 DKNDVVDLEDVKLGCT--YEPVVTNFA------------------------GLYRMRVGDIVLVTGFYNNAPQFKFVRRE 424 (581)
T ss_dssp CCSSCEEGGGCCTTCE--EEEEEECSS------------------------SCCSEECCEEEEEEEEETTEEEEEEEEET
T ss_pred CCCcEeCHHHcCCCce--EEEEEeecc------------------------ceeeEEcCCEEEEcccCCCCcEEEEEEec
Confidence 11 2345664 788774220 111289999999976 4689999999
Q ss_pred CCeeecCceeechHHHHHHHhhc
Q 004860 612 DDTMNLGGIKTSSVEIERVCDQA 634 (727)
Q Consensus 612 dd~ik~~G~ri~~~eIE~~l~~~ 634 (727)
+++++++|+++...+||++|.+.
T Consensus 425 ~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 425 NVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp TEEECSSSCCEEHHHHHHHHHHC
T ss_pred CCEEEeeeeECCHHHHHHHHHHH
Confidence 99999999999999999999643
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.77 E-value=1.6e-07 Score=102.73 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=90.0
Q ss_pred ccceeE--EEeecCCCChhhHHHHHhhCCCCccc-ccccccccccccccCCCCCCccccccccCCCCc-eEEEE--CCCC
Q 004860 470 WTKIRS--FASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVIL--DECG 543 (727)
Q Consensus 470 l~~Lr~--i~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vl--d~~~ 543 (727)
+++|++ ++++|.. ..-...++...++.+++ ..|+.||+...+-......+... ....+|+. -...+ |+.+
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~--~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEA--TFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTC--CEEECTTSCEEEEEEC----
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCcccc--ceeecCCcEEEEEEeccccc
Confidence 567752 3444422 22234454455567776 99999997543221111111110 01122332 12233 2221
Q ss_pred ---------CcCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceeeeeCceEEEecC----ceEEEEee
Q 004860 544 ---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG----GYIIVQGR 610 (727)
Q Consensus 544 ---------~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~d----G~l~~~GR 610 (727)
..|..|+. +|++|+..- |-.-||+||++++..- ..+.|+||
T Consensus 377 ~~~~~~v~l~eve~G~~--YelviTt~~------------------------GL~RYr~GD~v~v~g~~~~~p~~~~~gR 430 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEE--YEVVITNYA------------------------GLYRYRLGDVVKVIGFYNNTPQLKFICR 430 (581)
T ss_dssp ---CCCEEGGGCCTTCE--EEEEEESTT------------------------SCSSEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCceeeHHHcCCCCe--EEEEEeecc------------------------ceeeEEcCCEEEEecccCCCcEEEEEee
Confidence 24566764 888874320 1112999999998742 67999999
Q ss_pred cCCeeecCceeechHHHHHHHhhc-----CC--CceeeEEEeecCCCCCceEEEEEEEec
Q 004860 611 ADDTMNLGGIKTSSVEIERVCDQA-----DE--SILETAAISVSPAGGGPEVLVIFVVLK 663 (727)
Q Consensus 611 ~dd~ik~~G~ri~~~eIE~~l~~~-----~p--~V~~a~vv~~~~~~~~~~~l~a~vv~~ 663 (727)
.|+++++.|.++...+||.+|.+. .. .|.+-.+..-.. ... ..-+.|+...
T Consensus 431 ~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~-~~p-~hyv~~wE~~ 488 (581)
T 4epl_A 431 RNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS-TDP-GHYAIFWEIS 488 (581)
T ss_dssp TTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS-SSS-CEEEEEEEES
T ss_pred cCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC-CCC-CcEEEEEeec
Confidence 999999999999999999998632 22 356655544222 222 2444455664
No 42
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.37 E-value=2.8e-09 Score=118.92 Aligned_cols=132 Identities=12% Similarity=0.032 Sum_probs=102.1
Q ss_pred HHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC----Cccc-
Q 004860 13 LMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLYW- 86 (727)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~----~~~~- 86 (727)
++-+++..++..+|.++++++.+. .++++||++||++ |++.+++.|..+..|+ |+++|++++..... ...+
T Consensus 374 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 450 (520)
T 2jgp_A 374 TLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTLA 450 (520)
T ss_dssp EEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEEE
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCceeE
Confidence 344566666777888888888877 8999999999999 9999998888777888 99999998754221 1111
Q ss_pred -cCChhh--hcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCe
Q 004860 87 -FPSLDQ--SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK 152 (727)
Q Consensus 87 -~~~~~~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~ 152 (727)
.+.... ..++||++.+...++++...+ |+. ++|++.+++++.++|.++|+++...|+.+..
T Consensus 451 ~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~ 515 (520)
T 2jgp_A 451 PFMTDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQNPHIRLG 515 (520)
T ss_dssp ECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHCTTCBGG
T ss_pred EeecCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCccCchh
Confidence 111122 578888888777777888888 999 9999999999999999999998766655543
No 43
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=97.87 E-value=2.6e-07 Score=102.08 Aligned_cols=130 Identities=6% Similarity=-0.101 Sum_probs=88.9
Q ss_pred HcCCCchh--hHHHHHHHHHHHHh-hcCCChhHHHHHHHHhh---hcCCCCCCCcchhhHHHhhhcccccCCCCC-----
Q 004860 15 KVGLKLEE--AEEFDKILKQVISC-SKGLDAREIWRELVARK---VLKPWHPHGLHQLVYYSVYNDWDASIKGPP----- 83 (727)
Q Consensus 15 ~~~~~~~~--~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~---~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~----- 83 (727)
-+++..++ ..+|.++++++.+. .++++| ++||+. |++ .|++.+..+..++ |+++|++++......
T Consensus 301 plr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~~~~ 376 (493)
T 4hvm_A 301 VFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLTRGE 376 (493)
T ss_dssp EEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTTBTTGG--GCEEECC-------------
T ss_pred EEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCCCCCcc--eeEEEEEEecCCcccccccc
Confidence 34555556 67788888888877 999999 999999 999 9988888888888 999999986433221
Q ss_pred -------ccccCChh----------------hhcccc---hHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHH
Q 004860 84 -------LYWFPSLD----------------QSKLTN---LGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYW 136 (727)
Q Consensus 84 -------~~~~~~~~----------------~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~ 136 (727)
....+... ..+++| +.+.+...++++...+ |+. ++| +.+++++.++|
T Consensus 377 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~~ 450 (493)
T 4hvm_A 377 RTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDGL 450 (493)
T ss_dssp -------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHHH
T ss_pred ccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHHH
Confidence 11111111 124577 7777777788888888 999 999 99999999999
Q ss_pred HHHHhhcceeEecCCeee
Q 004860 137 EIALKEISVVFREAPKCI 154 (727)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~ 154 (727)
.++|+++...++.+...+
T Consensus 451 ~~~L~~~~~~p~~~l~~l 468 (493)
T 4hvm_A 451 DAAMAQAVADPSAPLPHS 468 (493)
T ss_dssp HHHHHHHHHCTTSBCCC-
T ss_pred HHHHHHHHhCCCCccccC
Confidence 999999988888777664
No 44
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=97.70 E-value=2.9e-07 Score=99.94 Aligned_cols=134 Identities=6% Similarity=-0.147 Sum_probs=95.7
Q ss_pred HHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCC--CCcccc--
Q 004860 13 LMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG--PPLYWF-- 87 (727)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~-- 87 (727)
++-+++..++..+|.++++++.+. .++++||++||+. +++.++..+ ...|+ |+++|++++.... ....+.
T Consensus 278 ~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~--~~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
T 1l5a_A 278 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNA--EQSYF--MSPFINILPFESPHFADCQTELK 352 (436)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCT--TCCBC--CCSEEEEECCCCCCCTTCEEEEE
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhcccc--cCCCc--cceEEEeeccCccccCCCeeEEE
Confidence 344566667777888888888887 8999999999999 999997654 23555 8888888754322 111110
Q ss_pred CChhhhcccchHHHHH-HhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhccee---EecCCeeeecC
Q 004860 88 PSLDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDR 157 (727)
Q Consensus 88 ~~~~~~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~---~~~~~~~~l~~ 157 (727)
........ |+.+.+. ..++++...+ |+. ++|++.+++++.++|.++|+++... ++.+...+|.+
T Consensus 353 ~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL~~ 421 (436)
T 1l5a_A 353 VLASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAE 421 (436)
T ss_dssp EEEECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHS
T ss_pred ecCCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhCC
Confidence 01112223 6666665 3456677777 988 9999999999999999999999877 77776666444
No 45
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=95.84 E-value=0.00019 Score=78.28 Aligned_cols=123 Identities=13% Similarity=0.115 Sum_probs=78.1
Q ss_pred HHcCCCchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHhhhcCCC-----CCCCcchhhHHHhhhcccccCCC----CCc
Q 004860 14 MKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPW-----HPHGLHQLVYYSVYNDWDASIKG----PPL 84 (727)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~~~~~a~~hq~~Pfe~~lv~~l~~~-----~~~~~~~~~~f~~~~~~~~~~~~----~~~ 84 (727)
.-+++..+...+|.++++++.+.+.+..||++||+. + +.|+.. +.....| +++|+++..... ...
T Consensus 310 lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~p----~~~f~~~~~~~~~~~~~~~ 383 (466)
T 2xhg_A 310 YPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQP----EVTFNYLGQFDADMRTELF 383 (466)
T ss_dssp EEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCCC----SEEEEEEEECCTTCSSSSC
T ss_pred ccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCCC----eEEEeecCcccccccCCce
Confidence 334555566678888888888774456999999996 4 556543 2223333 355666432111 111
Q ss_pred cccCCh---------------hhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeE
Q 004860 85 YWFPSL---------------DQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (727)
Q Consensus 85 ~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~ 147 (727)
...+.. .....++|++.+...++++...+ |+. ++|++.+|+++.++|.++|+++...+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~~~~ 457 (466)
T 2xhg_A 384 TRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAIIAHC 457 (466)
T ss_dssp EECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 111110 11126677766555667788888 999 99999999999999999999876443
No 46
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=89.74 E-value=0.0059 Score=65.27 Aligned_cols=107 Identities=10% Similarity=-0.088 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHh-hcCCChhHHH-----HHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCC---CCccccCCh--hh
Q 004860 24 EEFDKILKQVISC-SKGLDAREIW-----RELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG---PPLYWFPSL--DQ 92 (727)
Q Consensus 24 ~~~~~~l~~~~~~-~~a~~hq~~P-----fe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~--~~ 92 (727)
.+|.++++++.+. .++++||++| |++ +++.+++. .++ +++ |+ ++...... ......... ..
T Consensus 298 ~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~--~pl-~~~-~~---n~~~~~~~~~~~~~~~~~~~~~~~ 369 (422)
T 1q9j_A 298 TDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG--LPP-LVF-CT---DATSFPTMRTPPGLEIEDIKGQFY 369 (422)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS--SCC-CEE-EE---CCCCCCSCCCCTTCEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC--CCc-eEE-Ee---cCCcCCCCCCCCCceeEeeecccc
Confidence 3566666666666 8889999995 999 99988753 232 221 22 33221111 111111111 11
Q ss_pred -hcccchHHH-HHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeE
Q 004860 93 -SKLTNLGNA-LEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (727)
Q Consensus 93 -~~~~~l~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~ 147 (727)
...+++.+. +...++++...+|+. + .+++++.++|.++|+++...+
T Consensus 370 ~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~~~~ 417 (422)
T 1q9j_A 370 CSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVPSEY 417 (422)
T ss_dssp CBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTTTSC
T ss_pred cCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhhcCc
Confidence 335566554 444555665555666 4 889999999999999986443
No 47
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=85.66 E-value=4.5 Score=42.81 Aligned_cols=100 Identities=11% Similarity=0.088 Sum_probs=75.6
Q ss_pred CCCCceEEEEecCCCCCCc--cceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCEEee
Q 004860 188 KEDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~--s~~~vva~lA~~kaGa~~vp 262 (727)
..++.+|.+....+ .+|. ...+|.+.+...+..+++.+... ++++|++..+++- ....+..+++++..|+..++
T Consensus 87 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34577776554432 2333 24689999988888888877778 9999999998885 34445567888999999988
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecc
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~ 289 (727)
+++ ...+++...+++.++.+++....
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHH
Confidence 765 47888999999999999987764
No 48
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=84.55 E-value=5.4 Score=42.24 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=75.2
Q ss_pred CCCCceEEEEecCCCCCCc--cceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCCEEee
Q 004860 188 KEDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s--~~~vva~lA~~kaGa~~vp 262 (727)
..++.+|.+....+ .+|. ...+|.+.+...+..+++.+... ++++|++..+++-+ ...+..+++++..|+..++
T Consensus 89 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34567775544332 2333 24679999998888888877778 99999999988853 4445567888999999888
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecc
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~ 289 (727)
+++. ..+++...+++.++.++.....
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHH
Confidence 7654 7888899999999999987764
No 49
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=83.79 E-value=5.8 Score=41.91 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCc--cceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCEEeecCC
Q 004860 191 NTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 191 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~--s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+.+|.+....+ .+|. ...+|.+.+...+..+++.+... +.++|++..+++- ....+..+++++..|+..++.++
T Consensus 86 ~~~a~i~~TSG-TTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSG-TTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSC-SSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCC-cCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 77887665432 2333 24689999999888888888888 9999999998874 44556677889999999888765
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecc
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~ 289 (727)
. .++++...+++.++.+++....
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHH
Confidence 4 6788899999999999987764
No 50
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=78.71 E-value=4.2 Score=44.57 Aligned_cols=100 Identities=12% Similarity=0.007 Sum_probs=71.3
Q ss_pred CCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCC
Q 004860 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (727)
Q Consensus 355 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~ 431 (727)
|+.++++.+..+.++ ..+|.+.+... +.......++.++|++...++-+... +..+|+++..|+..+..+..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCc
Confidence 344554433333333 46888876443 33444556999999998888766543 34477999999999988877
Q ss_pred CChhhHHHHHHHhCCCEEEechHHHHHH
Q 004860 432 PLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (727)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (727)
...+++...++..+++++++....+..+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 7778999999999999999887765554
No 51
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=78.52 E-value=11 Score=41.32 Aligned_cols=104 Identities=11% Similarity=-0.021 Sum_probs=74.1
Q ss_pred CCCCeEEEEeCCCC-CCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEec
Q 004860 354 PVDAVVNILFSSGT-TGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (727)
Q Consensus 354 ~~~~~a~ii~TSGS-TG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (727)
.|+.+|++....+. .+. .-.+|.+.+.. .+.......++.++|++...++-+...- ..+|+++..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV-MTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHhCCEEEccC
Confidence 46778877653221 122 24578777644 3344445678999999998887765533 34778999999999988
Q ss_pred CCCChhhHHHHHHHhCCCEEEechHHHHHHH
Q 004860 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (727)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 460 (727)
.....+++...+++.+++++.+.+.....+.
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 7777789999999999999998877655443
No 52
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=77.57 E-value=12 Score=40.82 Aligned_cols=100 Identities=16% Similarity=-0.004 Sum_probs=72.7
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++....+ .+..+|.+.+... +.......++.++|++...++-+...- ..+|+++..|+..+..+.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL-EAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHhcCcEEEecCc
Confidence 4567777643211 3456888876543 334445678999999998887665433 346789999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHHHHHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (727)
....+++...+++.++.++++.+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 77778899999999999999987765544
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=76.40 E-value=7.9 Score=41.83 Aligned_cols=95 Identities=14% Similarity=0.025 Sum_probs=71.7
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHHH---HhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++. .+..+|.+.+...+ .......++.++|++...++-+... +..+++++..|+..+..+.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 467788764 13568888775443 3444456899999999888766543 3447789999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHHHHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (727)
....+++...+++.++.++++.+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7777899999999999999988776555
No 54
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=74.62 E-value=14 Score=39.73 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=70.0
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++... .+..+|.+.+... +.......++.++|++...++-+...- ..+|+++..|+..+..+.
T Consensus 15 ~p~~~a~~~~~-------~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA-------RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT-------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC-------CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCC
Confidence 46777776431 2356888876543 333344578999999998887765543 447789999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEe--chHHHHHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGT--VPSLVKAW 459 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~--~P~~l~~l 459 (727)
....+++...+++.+++.+.+ .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 777788999999999999988 55554444
No 55
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=74.47 E-value=8.7 Score=41.85 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=70.8
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++.... | -.+|.+.+.. .+.......++.++|++...++-+..+ +..+|+++..|+..+..+.
T Consensus 35 ~p~~~a~~~~~~---~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGAN---G----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETTT---C----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECCC---C----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 567888764322 2 3578887644 334444557899999998888776543 3447789999999998887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHHHHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (727)
....+++...++..++.++...+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 7777889999999999999887654443
No 56
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=72.92 E-value=11 Score=40.77 Aligned_cols=95 Identities=7% Similarity=-0.069 Sum_probs=69.3
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++.. +..+|.+.+... +.......++.++|++...++-+...- ..+|+++..|+..+..+.
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP-VAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH-HHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCceEEecCc
Confidence 4677777532 135788776543 334445678999999988887765533 346789999999998887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHHHHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (727)
...++++...+++.++.++++.+.....
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 133 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQN 133 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhH
Confidence 7777889999999999999887765433
No 57
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=72.67 E-value=16 Score=40.14 Aligned_cols=101 Identities=9% Similarity=-0.036 Sum_probs=72.3
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHHH---Hhhchhc-CCCCCCEEEEecccccccchHHhHHhhhcCcEEEEec
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~---~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (727)
.|+.+|++.... .| ....+|.+.+...+ ....... ++.++|++...++-+.... ..+|+++..|+..+..+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWW-LVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCeEEEecC
Confidence 467788765421 12 24578888765433 3333344 8999999988887665443 34678999999999888
Q ss_pred CCCChhhHHHHHHHhCCCEEEechHHHHHH
Q 004860 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (727)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (727)
.....+++...++..++.++++.+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 777778899999999999999877665544
No 58
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=71.30 E-value=19 Score=38.27 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=72.9
Q ss_pred CCCCeEEEEeCC--CCCCCCCeEEecChHHHHHHH---hhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEe
Q 004860 354 PVDAVVNILFSS--GTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (727)
Q Consensus 354 ~~~~~a~ii~TS--GSTG~PKgV~~th~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~ 428 (727)
.|+.+|++.... +.+| ....+|.+.+...+. ......+. ++|++...++-+... +..+|+++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 567888776542 2222 236788887754433 33344565 899998877766543 33477899999999888
Q ss_pred cC---CCChhhHHHHHHHhCCCEEEechHHHHHHHhc
Q 004860 429 QG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 462 (727)
Q Consensus 429 ~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~ 462 (727)
+. ....+++...++..++.+++..+.....+...
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 64 33457888999999999999998877766553
No 59
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=71.28 E-value=16 Score=39.40 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=69.9
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++.. | +...+|.+.+... +.......++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFC-CLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCc
Confidence 4677887653 1 2346888876543 344445578999999998887665433 347799999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSLV 456 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l 456 (727)
....+++...++..++.++.+.+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 77778899999999999998766543
No 60
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=70.88 E-value=17 Score=39.73 Aligned_cols=96 Identities=9% Similarity=-0.044 Sum_probs=70.4
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHHH---HhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++. . +-.+|.+.+...+ .......++.++|++...++-+...- ..+|+++..|+..+..+.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF-IGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEEeCC
Confidence 467777763 1 2367888765433 33344568999999988887665433 347789999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHHHHHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (727)
....+++...++..++.++++.+.....+
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 77778899999999999999887655443
No 61
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=70.59 E-value=16 Score=40.23 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=70.5
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++.... .| ....+|.+.+.. .+.......++++||++...++-+.... ..+|+++..|+..+..+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~-~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW-YCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHhCCEEEEeCCc
Confidence 578888876532 12 246788887644 3444445679999999998887765533 347788999999998887
Q ss_pred CCChhhHHHHHHHhCCCEEEech
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVP 453 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (727)
....+++...+++.++.++.+.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 77778899999999999998754
No 62
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=70.43 E-value=19 Score=40.47 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=71.1
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhch-hcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEec
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (727)
.|+.+|++... ..+| .+..+|.+.+.. .+..... ..++.+||++..+++-+...- ..+++++..|+..+.++
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v-~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI-ITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEeeC
Confidence 46778877542 2222 235688887644 3344444 678999999999888775543 44779999999999988
Q ss_pred CCCChhhHHHHHHHhCCCEEEechH
Q 004860 430 GSPLERSFGKFVQDAGVTVLGTVPS 454 (727)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~ 454 (727)
.....+.+...|++.++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7777889999999999999988653
No 63
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=66.98 E-value=15 Score=39.45 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=61.7
Q ss_pred EecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEe
Q 004860 375 PWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 451 (727)
Q Consensus 375 ~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~ 451 (727)
.+|.+.+... +.......++.++|++...++-+... +..+|+++..|+..+..+.....+++...+++.++.++.+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 5788876443 33444556899999998888766543 3447799999999999887777788999999999999998
Q ss_pred chHH
Q 004860 452 VPSL 455 (727)
Q Consensus 452 ~P~~ 455 (727)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7653
No 64
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=66.32 E-value=25 Score=39.33 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=70.0
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++... ..+| .+-.+|.+.+... +.......++.+||++..+++-+... +..+++++..|+..+.++.
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCC
Confidence 46778877532 2222 2456888876543 33444557899999999888877554 3447799999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEech
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVP 453 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (727)
...++.+...+++.++.++++..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77788999999999999988753
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=66.27 E-value=22 Score=38.90 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=68.5
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++. . +-.+|.+.+... +.......++.++|++...++-+...- ..+|+++..|+..+..+.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV-VALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEcCC
Confidence 567787763 1 235888876443 334445578999999988887665533 347789999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSL 455 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~ 455 (727)
....+++...++..++.++.+....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 7778899999999999999887543
No 66
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=66.18 E-value=21 Score=38.83 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=66.9
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++. .+-.+|.+.+.. .+.......++.++|++...++-+...- ..+|+++..|+..+..+.
T Consensus 43 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---------GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY-IVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---------CCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHhCcEEecCCC
Confidence 567888763 134688887644 3344445578999999998877665433 347789999999888776
Q ss_pred CCChhhHHHHHHHhCCCEEEech
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVP 453 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (727)
.....++...++..++.++...+
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCHHHHHHHHHhcCeeEEEEcc
Confidence 66778899999999999998765
No 67
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=64.14 E-value=33 Score=37.61 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=72.1
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++....+ .+-.+|.+.+... +.......++.++|++...++-+... +..+|+++..|+..+..+.
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEecC
Confidence 5678887755421 2457888876543 34444567899999999888766553 3346789999999988865
Q ss_pred CC---ChhhHHHHHHHhCCCEEEechHHHHHHH
Q 004860 431 SP---LERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (727)
Q Consensus 431 ~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 460 (727)
.. ..+.+...++..++.++...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 2356778899999999999888776653
No 68
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=63.20 E-value=27 Score=35.61 Aligned_cols=99 Identities=10% Similarity=0.056 Sum_probs=66.4
Q ss_pred CCCceEEEEecCCCCCCcc--ceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCEEeec
Q 004860 189 EDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~--s~~~vva~lA~~kaGa~~vpl 263 (727)
.++.+|.+....+ .+|.. ..+|.+.+...+..+++.+... +.++|++..++|- ..--+...++++..|+..++.
T Consensus 89 ~~~~~a~i~~TSG-TTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 89 PADSHPQVYESGG-TTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp CTTCCCEEEEECC----CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CccccEEEEECCC-CCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4566666654432 23332 4678888888887777777777 8999999999886 223334455558999966654
Q ss_pred CCCCCHH-----------------------HHHHHHHhcCeEEEEeeccc
Q 004860 264 ADSFAAR-----------------------EIATRLRVSKAKGIFTQDFI 290 (727)
Q Consensus 264 ~p~~~~~-----------------------~l~~~l~~~~~~~il~~~~~ 290 (727)
+ +.+. ++...+++.++.+++....+
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 3 3444 66668899999999887643
No 69
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=60.62 E-value=27 Score=37.93 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=66.1
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++. + +..+|.+.+... +.......++.++|++...++-+...- ..+|+++..|+..+..+.
T Consensus 38 ~p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 107 (539)
T 1mdb_A 38 YGDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF-EVIFALFRLGALPVFALP 107 (539)
T ss_dssp HTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCeEEecCCC
Confidence 457777763 1 246788876543 333444578999999998887665433 347789999999888877
Q ss_pred CCChhhHHHHHHHhCCCEEEech
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVP 453 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (727)
....+++...++..++.++++.+
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 108 SHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCHHHHHHHHHhCCCCEEEecc
Confidence 67778899999999999988765
No 70
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=60.44 E-value=23 Score=38.55 Aligned_cols=84 Identities=7% Similarity=-0.023 Sum_probs=63.7
Q ss_pred EEecChHHHHHH---HhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEE
Q 004860 374 IPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 450 (727)
Q Consensus 374 V~~th~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~ 450 (727)
..+|.+.+...+ .......++.++|++...++-+...- ..+|+++..|+..+..+.....+++...++..++.+++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFF-IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 357888765443 33334578999999988887665533 34778999999999988777778899999999999999
Q ss_pred echHHHHH
Q 004860 451 TVPSLVKA 458 (727)
Q Consensus 451 ~~P~~l~~ 458 (727)
+.+.....
T Consensus 130 ~~~~~~~~ 137 (548)
T 2d1s_A 130 SSKKGLDK 137 (548)
T ss_dssp ECTTTHHH
T ss_pred EcHHHHHH
Confidence 87765443
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=58.72 E-value=27 Score=37.57 Aligned_cols=90 Identities=10% Similarity=-0.097 Sum_probs=65.3
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++.. +-.+|.+.+... +.......++.++|++...++-+... +..+|+++..|+..+..+.
T Consensus 17 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 17 QADFPVYDCL---------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCCcceecC---------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCc
Confidence 4566776531 235788876543 33444567899999998877766443 3346789999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEech
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVP 453 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (727)
....+++...++..+++++++..
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESS
T ss_pred cccHHHHHHHHHhCCCCEEEecC
Confidence 77778999999999999988654
No 72
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=56.04 E-value=31 Score=37.10 Aligned_cols=89 Identities=9% Similarity=-0.085 Sum_probs=64.3
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++.. +-.+|.+.+... +.......++.++|++...++-+... +..+|+++..|+..+..+.
T Consensus 14 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~-~~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 14 TPDQTAFVWR---------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEM-IINFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCceEEEeC---------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCC
Confidence 4677777541 135788876543 33344456899999998877665443 3447799999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEec
Q 004860 431 SPLERSFGKFVQDAGVTVLGTV 452 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (727)
....+++...++..++.++...
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEES
T ss_pred CCcHHHHHHHHHhcCCCEEEec
Confidence 7777889999999999888764
No 73
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=54.71 E-value=30 Score=40.75 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=70.3
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++... +| -.+|.+.+.. .+.......++.++|++...++-+... +..+|+++..|+..+..+.
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~-~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF-VLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH-HHHHHHHHHcCCEEEeeCC
Confidence 57888876432 22 4578877644 334444557899999998888776543 3347799999999999987
Q ss_pred CCChhhHHHHHHHhCCCEEEechHHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSLV 456 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l 456 (727)
...++++...+++.++.++++.+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 77788999999999999998876543
No 74
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=51.38 E-value=34 Score=36.54 Aligned_cols=90 Identities=6% Similarity=-0.054 Sum_probs=64.6
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL 433 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~ 433 (727)
.|+.+|++. + +-.+|.+.+...+......+.-.++|++...++-+... +..+|+++..|+..+..+....
T Consensus 14 ~pd~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~ 83 (501)
T 3ipl_A 14 NGHHIAITD---G------QESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQS-IILIHACWLANIEIAMINTRLT 83 (501)
T ss_dssp HTTSEEEEC---S------SCEEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSC
T ss_pred cCCceEEEe---C------CcEEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEecCccCC
Confidence 456777652 1 23688888766555444443333899998888766543 3447799999999999887777
Q ss_pred hhhHHHHHHHhCCCEEEech
Q 004860 434 ERSFGKFVQDAGVTVLGTVP 453 (727)
Q Consensus 434 ~~~l~~~i~~~~vt~l~~~P 453 (727)
.+++...++..+++++++..
T Consensus 84 ~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 84 PNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp HHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEcc
Confidence 88999999999999988753
No 75
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=47.66 E-value=49 Score=36.58 Aligned_cols=89 Identities=4% Similarity=-0.164 Sum_probs=65.1
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|++. . .-.+|.+.+.. .+.......++.++|++...++-+..+- ..+++.+..|+..+..+.
T Consensus 40 ~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-va~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESI-TCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEeeCc
Confidence 567777763 1 12578887644 3444445568999999988887665433 347799999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEec
Q 004860 431 SPLERSFGKFVQDAGVTVLGTV 452 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (727)
....+++...++..++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 6677888899999999888744
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=47.18 E-value=78 Score=34.31 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=65.7
Q ss_pred CCCCeEEEEeCCCCCCCCC--eEEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEe
Q 004860 354 PVDAVVNILFSSGTTGEPK--AIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PK--gV~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~ 428 (727)
.|+.+|++... |..+..+ .-.+|.+.+... +.......++ ++|++...++-+...- ..+|+++..|+..+..
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF-AIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH-HHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEec
Confidence 56778876543 2333332 356788776443 3333344577 7999988887765543 3477899999999988
Q ss_pred cCCCChhhHHHHHHHhCCCEEEech
Q 004860 429 QGSPLERSFGKFVQDAGVTVLGTVP 453 (727)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P 453 (727)
+.....+++...++..++.++++..
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 8777778899999999999887653
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=44.68 E-value=1.7e+02 Score=27.13 Aligned_cols=90 Identities=10% Similarity=-0.095 Sum_probs=51.7
Q ss_pred CEEEEeccc--ccccchHHhHHhhh-cCcEEEEecCCCChhhHHHHHHHhCCCEEEe------chHH--HHHHHhcCCCC
Q 004860 398 DVYCWPTNL--GWVMGPVILFSSFL-NGATLALYQGSPLERSFGKFVQDAGVTVLGT------VPSL--VKAWRNTNCLE 466 (727)
Q Consensus 398 d~~l~~~~~--~~~~~~~~~~~~l~-~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~------~P~~--l~~l~~~~~~~ 466 (727)
.+++..++. .|+.|...+-..|- +|..++.......++.+.+.+.++++.++.+ ++++ +..+++.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 455555544 38888754433333 5666665554557789999999999998777 2222 22222211111
Q ss_pred CCCccceeEEEeecCCCChhhHH
Q 004860 467 GLDWTKIRSFASTGETSNVDDDL 489 (727)
Q Consensus 467 ~~~l~~Lr~i~~gGe~l~~~~~~ 489 (727)
.. ...++ +++||.+++++..+
T Consensus 173 ~~-~~~v~-v~vGG~~~~~~~a~ 193 (215)
T 3ezx_A 173 KL-RDSVK-CMFGGAPVSDKWIE 193 (215)
T ss_dssp TC-GGGSE-EEEESSSCCHHHHH
T ss_pred CC-CCCCE-EEEECCCCCHHHHH
Confidence 11 01333 78899998876443
No 78
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=41.28 E-value=61 Score=35.75 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=66.0
Q ss_pred CCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCC
Q 004860 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (727)
Q Consensus 355 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~ 431 (727)
|+.+|.+- | +-.+|.+.+.. .+.......++.++|++...++-+..+- ..+++++..|+..+..+..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~v-va~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELY-ITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHH-HHHHHHHhcCeEEccCCcc
Confidence 67777762 1 24578887644 3444445578999999988887665543 3477999999998888776
Q ss_pred CChhhHHHHHHHhCCCEEEech
Q 004860 432 PLERSFGKFVQDAGVTVLGTVP 453 (727)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P 453 (727)
....++...++..++.++....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 6778899999999999988764
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=40.66 E-value=73 Score=34.54 Aligned_cols=86 Identities=9% Similarity=-0.042 Sum_probs=62.4
Q ss_pred eEEecChHHHHHH---HhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCC-------hhhHHHHHH
Q 004860 373 AIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQ 442 (727)
Q Consensus 373 gV~~th~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~-------~~~l~~~i~ 442 (727)
+-.+|.+.+...+ .......++.++|++...++-+...- ..+++++..|+..+..+.... ...+...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFV-EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 3568888765433 33444578999999998887765433 347789999999988864433 467888899
Q ss_pred HhCCCEEEechHHHHHH
Q 004860 443 DAGVTVLGTVPSLVKAW 459 (727)
Q Consensus 443 ~~~vt~l~~~P~~l~~l 459 (727)
..++..+.........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999877655544
No 80
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=39.75 E-value=96 Score=27.67 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=46.0
Q ss_pred hHHHHHHHhhcCCCceeeEEEeecCCCCC-ceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcC
Q 004860 624 SVEIERVCDQADESILETAAISVSPAGGG-PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 698 (727)
Q Consensus 624 ~~eIE~~l~~~~p~V~~a~vv~~~~~~~~-~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~ 698 (727)
-+|+++.|. +.++|..|-|...-..... ...--+++.+++|...+... . .|++.+....|. +.|..+.+++
T Consensus 92 egELartI~-~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~g~~l~~~q-~-~I~~LVa~SV~g-L~~enVtVvd 163 (171)
T 1yj7_A 92 EQDIERLLS-KIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVNLAPSV-I-QIKNLVKNSVDD-LKLENISVVI 163 (171)
T ss_dssp HHHHHHHHT-TSTTEEEEEEEEEC-------CEEEEEEEECTTCCCGGGH-H-HHHHHHHHHSTT-CCGGGEEEEE
T ss_pred HHHHHHHHH-cCCCeeEEEEEEECCCCCCCCceEEEEEEeCCCCCCcHhH-H-HHHHHHHHhcCC-CCcccEEEEe
Confidence 678999995 9999999987443332222 12233445566677777654 3 488888888865 6688777776
No 81
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=38.75 E-value=77 Score=33.85 Aligned_cols=89 Identities=11% Similarity=-0.050 Sum_probs=62.7
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhc----hhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEec
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW----AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (727)
.|+.+|++. .+-.+|.+.+...+.... ...+..+++++....+-+... +..+|+++..|+..+..+
T Consensus 14 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~ 83 (511)
T 3e7w_A 14 YPQTDAFRS---------QGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHM-IVSFLGSVKAGHPYIPVD 83 (511)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHH-HHHHHHHHHHTCCEEEEE
T ss_pred CCCCeEEEc---------CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHH-HHHHHHHHHhCCEEEecC
Confidence 457777653 134688887755443332 234667889887776655332 344778999999999988
Q ss_pred CCCChhhHHHHHHHhCCCEEEec
Q 004860 430 GSPLERSFGKFVQDAGVTVLGTV 452 (727)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~ 452 (727)
.....+++...++..++++++..
T Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~ 106 (511)
T 3e7w_A 84 LSIPSERIAKIIESSGAELLIHA 106 (511)
T ss_dssp TTSCHHHHHHHHHHHTCCEEEES
T ss_pred CCChHHHHHHHHHhCCCCEEEec
Confidence 77778899999999999998863
No 82
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=33.83 E-value=83 Score=33.59 Aligned_cols=78 Identities=9% Similarity=0.080 Sum_probs=57.6
Q ss_pred EEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEech
Q 004860 374 IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP 453 (727)
Q Consensus 374 V~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P 453 (727)
-.+|.+.+...+...... +..++++...++-+.... ..+++++..|+..+..+.....+++...+++.++.++...+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~--L~~~~~V~i~~~~~~~~~-~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGR--IGGAGRVAVWATPAMETG-VAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTT--CC---CEEEECCSSHHHH-HHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhh--ccCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 468988887766655544 346888887777665433 34778999999999998777778999999999999998865
Q ss_pred H
Q 004860 454 S 454 (727)
Q Consensus 454 ~ 454 (727)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 3
No 83
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=33.34 E-value=1.5e+02 Score=29.50 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=43.3
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHH-HhCCEEeecCCC---------C---CHHHHHHHHHhcCeEEEEeeccc
Q 004860 230 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIADS---------F---AAREIATRLRVSKAKGIFTQDFI 290 (727)
Q Consensus 230 v~~gd~Vai~~~~s~------~~vva~lA~~-kaGa~~vpl~p~---------~---~~~~l~~~l~~~~~~~il~~~~~ 290 (727)
+++||+|+|++|.+. +.+-.-+..+ ..|.-.+.-..- . .++++..++.|-.++.|++..+-
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 789999999999853 3333333333 346554432211 1 24467778888999999998765
Q ss_pred ccCCccccc
Q 004860 291 LRGGRKFPL 299 (727)
Q Consensus 291 ~~~~~~~~~ 299 (727)
+...+.++.
T Consensus 89 ~g~~rlL~~ 97 (327)
T 4h1h_A 89 FNSNQLLPY 97 (327)
T ss_dssp SCGGGGGGG
T ss_pred hhHHHHhhh
Confidence 544444443
No 84
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=32.11 E-value=96 Score=37.79 Aligned_cols=92 Identities=14% Similarity=0.044 Sum_probs=67.5
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.|+.+|.+ +. +-.+|.+.+.. .+.......++++++++...++-+..+- ..+++.+.+|+..+..+.
T Consensus 477 ~p~~~Av~-~~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-v~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALT-YS--------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELV-IGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEE-SS--------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEE-EC--------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEECC
Confidence 56777765 21 23578877643 4444445678999999988887765543 347799999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSL 455 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~ 455 (727)
....+++...++..++.++.+.+..
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~ 571 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEM 571 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECcch
Confidence 7777889999999999998876543
No 85
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=30.79 E-value=1.4e+02 Score=30.11 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=53.4
Q ss_pred HHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeec
Q 004860 220 MLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (727)
Q Consensus 220 ~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 288 (727)
+.+.....+- +++|.+..+....+-.-+..-++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 4444555555 78888777788888888888899999998887777766666667788999999999865
No 86
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=29.23 E-value=1.9e+02 Score=28.92 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=45.3
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecc
Q 004860 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 230 v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~ 289 (727)
+++|+.|.+....+-.-...-++|.+.|.-++.+-|...+..-..+++..++.+++++..
T Consensus 68 l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 68 LIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 688888756666677777788888888987776666555455567788999999998753
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.89 E-value=2.1e+02 Score=28.55 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=44.4
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCCEEeecCCC----------CC---HHHHHHHHHhcCeEEEEeecc
Q 004860 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS----------FA---AREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 230 v~~gd~Vai~~~~s~------~~vva~lA~~k-aGa~~vpl~p~----------~~---~~~l~~~l~~~~~~~il~~~~ 289 (727)
+++||+|+|++|.+. +-+-.-+..++ .|.-++. .+. .+ .+++..++.|-+++.|++..+
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~-~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILE-GSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEE-CTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEE-cccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 789999999999983 23333344444 5666554 221 12 345677788889999999876
Q ss_pred cccCCccccc
Q 004860 290 ILRGGRKFPL 299 (727)
Q Consensus 290 ~~~~~~~~~~ 299 (727)
-+...+.++.
T Consensus 89 G~g~~rlL~~ 98 (336)
T 3sr3_A 89 GMNSNSLLPY 98 (336)
T ss_dssp CSCGGGGGGG
T ss_pred cccHHHHhhh
Confidence 5544444444
No 88
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=27.71 E-value=2e+02 Score=28.63 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=44.6
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCCEEeecCCC----------CC---HHHHHHHHHhcCeEEEEeecc
Q 004860 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS----------FA---AREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 230 v~~gd~Vai~~~~s~------~~vva~lA~~k-aGa~~vpl~p~----------~~---~~~l~~~l~~~~~~~il~~~~ 289 (727)
+++||+|+|++|.+. +-+-.-+..++ .|.-++. .+. .+ .+++..++.|-+++.|++..+
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~-~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTF-STHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEE-CTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEE-CCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 789999999999875 33433444454 5665553 331 12 345667788889999999876
Q ss_pred cccCCccccc
Q 004860 290 ILRGGRKFPL 299 (727)
Q Consensus 290 ~~~~~~~~~~ 299 (727)
-+...+.++.
T Consensus 88 G~g~~rlL~~ 97 (331)
T 4e5s_A 88 GYNSNGLLKY 97 (331)
T ss_dssp CSCGGGGGGG
T ss_pred cccHHHHHhh
Confidence 5544444444
No 89
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=27.38 E-value=2e+02 Score=29.24 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=44.4
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCCEEeecCCC---------CC---HHHHHHHHHhcCeEEEEeeccc
Q 004860 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS---------FA---AREIATRLRVSKAKGIFTQDFI 290 (727)
Q Consensus 230 v~~gd~Vai~~~~s~------~~vva~lA~~k-aGa~~vpl~p~---------~~---~~~l~~~l~~~~~~~il~~~~~ 290 (727)
+++||+|+|++|.+. +-+-.-+..++ .|.-++.-... .+ .++|..++.|-+++.|++..+-
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGG 119 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGG 119 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 899999999999874 23333344444 56665533211 12 3456667778899999998765
Q ss_pred ccCCccccc
Q 004860 291 LRGGRKFPL 299 (727)
Q Consensus 291 ~~~~~~~~~ 299 (727)
+...+.++.
T Consensus 120 yga~rlLp~ 128 (371)
T 3tla_A 120 DNSNSLLPF 128 (371)
T ss_dssp SCGGGGGGG
T ss_pred ccHHHHHhh
Confidence 544444444
No 90
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=25.26 E-value=2.5e+02 Score=22.42 Aligned_cols=63 Identities=8% Similarity=0.106 Sum_probs=39.0
Q ss_pred chHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCC-ChHHHHHHHHHHHHhhcCC
Q 004860 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS-QPDKLKMIFSKAIQSKLNP 687 (727)
Q Consensus 623 ~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~-~~~~l~~~l~~~l~~~L~~ 687 (727)
...+|+..+. +.|+|.++-=+-.... +..-.+-+-|+..++... +..++...+++.|++.+|.
T Consensus 11 ~~~~I~~~l~-~~~gV~~vh~lr~r~~-G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~ 74 (107)
T 2zzt_A 11 MYDDIFAVLE-RFPNVHNPHRVRIRRV-GTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDD 74 (107)
T ss_dssp HHHHHHHHHT-TCSSCEEEEEEEEECS-CC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH-cCCCccccEEEEEEEE-CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3467888885 8999988754444332 222455566666543221 2246778888888887773
No 91
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=24.29 E-value=3.7e+02 Score=27.75 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=36.0
Q ss_pred cCCCCEEEEEcCCCHHHHHHHH-HHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeec
Q 004860 230 FSKGDAIAIDMPMTVRAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (727)
Q Consensus 230 v~~gd~Vai~~~~s~~~vva~l-A~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 288 (727)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.+ ..+.++..++. +.++|+...
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~ 175 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLET 175 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEES
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEEC
Confidence 6788888766665554443332 455678777777665 56667666654 567776654
No 92
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=21.09 E-value=1.5e+02 Score=22.23 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=29.6
Q ss_pred hHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHH
Q 004860 624 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 681 (727)
Q Consensus 624 ~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l 681 (727)
..++++.| +..|+|.+|..+.-+ .-+.+.+..+ +.+++.+.+.+.+
T Consensus 15 ~~~~~~~l-~~~peV~e~~~vtG~------~D~ll~v~~~-----d~~~l~~~i~~~l 60 (83)
T 2cvi_A 15 EREVMEKL-LAMPEVKEAYVVYGE------YDLIVKVETD-----TLKDLDQFITEKI 60 (83)
T ss_dssp HHHHHHHH-HTSTTEEEEEECBSS------CSEEEEEEES-----SHHHHHHHHHTTG
T ss_pred HHHHHHHH-hCCCCeeEEEEEccc------CCEEEEEEEC-----CHHHHHHHHHHHh
Confidence 37889999 499999999876522 2344455543 4477776654434
Done!