BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004861
(726 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana
GN=RF298 PE=2 SV=1
Length = 814
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 270/723 (37%), Positives = 387/723 (53%), Gaps = 110/723 (15%)
Query: 8 GSSSSCQVSPLMLVQEKGSRNKRKFRADPPLGEPNKIIPSPQNECPTYEFTAEKFDITPG 67
G+SSS VSP Q+KG +NKRK ADP SPQN EF ++++
Sbjct: 20 GTSSS--VSP---PQDKGRKNKRKL-ADP----------SPQNAASLTEFP--RYELHSF 61
Query: 68 HGQTGACDLCGVNQDHSDGLKLDLGLSSAVGSSEVGPSRPREELEVEEFQDADWSDLTES 127
Q+ C ++ S+G +L+ EE W D
Sbjct: 62 KSQSPLC------ENDSNG-----------------------QLKAEESDSVGWDDPFAC 92
Query: 128 QLEELVLSNLDAIFKSAIKKIVACGYMEEVATKAVLRSGLCYGSKDTVSNIVDNTLAFLR 187
LE L+ SNL +F+SA+ +I+ CGY E+V KA+ S G D VSNIV++TL+FL+
Sbjct: 93 HLEGLLSSNLLTLFRSAMNQIMDCGYSEDVVLKAISSSRFYCGGTDLVSNIVNDTLSFLK 152
Query: 188 SGQEINSSREHYFQDLPQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247
SG+++ SR++ F+DL QL Y L E + ++REVRP ST +AMW LLICD+NV A +
Sbjct: 153 SGKKVAGSRDYVFEDLQQLVAYSLVEKISLVREVRPSLSTDEAMWRLLICDLNVLKAFEV 212
Query: 248 DGDPLSSFSGDGASNGNSHITTQLQTKTEAKCSELNLP------NPSKPVPSIPCSHSSQ 301
D D L + +E+ +E N P NP PV + + S Q
Sbjct: 213 DADGLEG-----------SSVSNASKSSESPVAECNPPKSSDADNPKAPVSN---TQSKQ 258
Query: 302 PEAPTVAGIPNITKSKNSHVGSEISEKDGTNSISDNVDKTFSVAGTSQSPALEEKFVGSR 361
E N+ SKN H K+ + + + + T S + TS S +EK V R
Sbjct: 259 SEPVKFGNFANVNNSKNPHASGATPGKEVFSVSTASGEGTKSASLTSVS---DEKLVSCR 315
Query: 362 KVHSGSSKREY-MLRQKSLHLEKHYRTYGSKGSSRAGKLSGLGGLILDKKLKSVSDTTSV 420
K G +K+E MLRQKS +EK RTY G + K GG +++K+ KS SD S
Sbjct: 316 K---GRTKKEMAMLRQKSC-VEK-IRTYSKGGGYKTAKF---GGFLVEKRGKSASDLLSA 367
Query: 421 NLKNASSKIS-KAIEVHQDNGSHNLSTSPGTSSPATFHSQGANAISALPKTSMPSTFPPG 479
+N+SSKI+ + +++ S LS S + SPA + ++ALP + P+
Sbjct: 368 QARNSSSKITTEVMKIPLAESSSTLSNSTKSDSPALDVKEH---VTALPANNAPA----- 419
Query: 480 GTPAVLPLANTLPVLSAADTELSLSLPTKSNSTQVPAGINSVAPNCGYAGILSDDTSLEH 539
P+A+ S ++ E S+ TK P Y + D +L
Sbjct: 420 ------PVASEKK--SGSEPEEKPSVSTK--------------PAPDYYAAIPYDATLGI 457
Query: 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEV 599
+P++KRDE+ILKL+PR+++L +L +WT+WANQKV QA RL KD+ ELK LR+EKEE
Sbjct: 458 YIPRNKRDELILKLVPRMKDLQKELQDWTDWANQKVKQATVRLLKDQPELKALRKEKEEA 517
Query: 600 ERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRA 659
E +KEKQ+LEENT+K+ SEME AL A+ Q+ER N+ +RRLE+E + L++E EAA +RA
Sbjct: 518 EEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQSLLKREREAANIRA 577
Query: 660 AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719
+ESA SC+E +R ++ QSWE QK L QEEL +++ KV L QE+ +AK Q Q+E
Sbjct: 578 SESAESCREAKERVQRLLKNSQSWEGQKNLLQEELKSQRDKVAGLQQEVAKAKTRQNQIE 637
Query: 720 VFF 722
+
Sbjct: 638 ATW 640
>sp|Q9ZVT8|RF4_ARATH Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana
GN=RF4 PE=3 SV=1
Length = 823
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 264/720 (36%), Positives = 391/720 (54%), Gaps = 92/720 (12%)
Query: 15 VSPLMLVQEKGSRNKRKFRADPPLGEPNKIIPSPQNECPTYEFTAEKFDITPGHGQTGAC 74
VSP QEKG +NKRK ADP +PN S E P YE + + P
Sbjct: 25 VSP----QEKGRKNKRKL-ADP--SQPN---ASSLTEFPPYELPS----LKP-------- 62
Query: 75 DLCGVNQDHSDGLKLDLGLSSAVGSSEVGPSRPREELEVEEFQDADWSDLTESQLEELVL 134
Q+H G + +VG EV +L+VE + +W D LEEL+
Sbjct: 63 ------QNHLSG-------NGSVG--EVS-----NQLQVEVSESVEWDDPFACHLEELLS 102
Query: 135 SNLDAIFKSAIKKIVACGYMEEVATKAVLRSGLCYGSKDTVSNIVDNTLAFLRSGQEINS 194
SNL +F +K+++ GY ++ KAV R L G + +SNIV+NTL+ L++G E
Sbjct: 103 SNLLTLFLDTMKQLIDLGYTDDEVLKAVSRCRLYCGGNNLLSNIVNNTLSALKTGDEGAG 162
Query: 195 SREHYFQDLPQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDGDPLSS 254
S ++ F+DL QL Y L E++ +++EVRP ST +AMW LL+CD+NV A +GD L
Sbjct: 163 SGDYVFEDLQQLVSYTLVEMISLIKEVRPSLSTVEAMWRLLMCDLNVLQAFEAEGDGL-- 220
Query: 255 FSGDGASNGNSHITTQLQTKTEAKCSELNLP---NPSKPVPSIPCSHSSQPEAPTVAGIP 311
+++ + +E+ +E N P +P P P S++ E P
Sbjct: 221 ------------VSSSKLSDSESLGAESNPPKSSDPDNPKPPQSDPQSNRNEPLKFGNFP 268
Query: 312 NITKSKNSHVGSEISEKDGTNSISDNVDKTFSVAGTSQSPALEEKFVGSRKVHSGSSKRE 371
N SK + G S + + TS + +EK V RK G +K+E
Sbjct: 269 NTPNSKKTQSSGTTP---GKEVCSGSTVSCQGMRSTSFTLVSDEKLVSCRK---GRTKKE 322
Query: 372 Y-MLRQKSLHLEKHYRTYGSKGSSRAGKLSGLGGLILDKKLKSVSDTTSVNLKNASSKIS 430
MLRQKS +EK RTY +A K + +G +L+K++KS S+ +N+SSKI+
Sbjct: 323 IAMLRQKSC-VEK-IRTYSKGSGYKAAKFASVGSFLLEKRVKSSSEFVP---RNSSSKIT 377
Query: 431 KAIEVH----QDNGSHNLSTSPGTSSPATFHSQGANAISALPKTSMPS-TFPPGGTPAVL 485
I V +D+G S S ++G I+ALP S+ S + G+ +V
Sbjct: 378 AEIGVKVSLAEDSGCFVRKNSKLDSPVVVVDAKG--YITALPARSVKSASKKKTGSESV- 434
Query: 486 PLANTLPVLSAADTELSLSLPTKS-----NSTQVPAGINS-VAPNCGYAGILSDDTSLEH 539
TL + SA++ + S+P+ S + ++ A +++ +AP+ YAGI D +L
Sbjct: 435 ----TL-IPSASEKKSDSSIPSTSEKKSGSESEEKASVSAKLAPDY-YAGI-PYDAALGI 487
Query: 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEV 599
VP+DK+DE+ILKL+PRV +L N+L WT+WANQKV +A RL KD+ ELK LR+E+EE
Sbjct: 488 YVPRDKKDELILKLVPRVNDLQNELQVWTDWANQKVKEATGRLLKDQPELKALRKEREEA 547
Query: 600 ERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRA 659
E+ KKEKQ+LEENT K+LSEM+ AL A+ Q+E+A + RLE+E + L++EMEAAK++A
Sbjct: 548 EQYKKEKQLLEENTRKRLSEMDFALKNATSQLEKAFNTAHRLELEQSILKKEMEAAKIKA 607
Query: 660 AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719
ESA S +E +R +++ SWE QK + QEEL ++ KV L +E+ +AK Q Q+E
Sbjct: 608 VESAESFREAKERGERSLKDIHSWEGQKIMLQEELKGQREKVTVLQKEVTKAKNRQNQIE 667
>sp|Q8RX22|MIP1_ARATH MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1
SV=1
Length = 711
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 120/189 (63%), Gaps = 1/189 (0%)
Query: 531 LSDDTSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELK 590
L+ D +LE V D +D +I+ L+ +V++ ++ E EWA + MQAA+++S++ AELK
Sbjct: 353 LNLDDNLES-VGVDDKDCVIVDLLHQVKDFEKKVKERKEWAQKNAMQAAQKVSEELAELK 411
Query: 591 TLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650
TL E+E ++ LKK KQ +EE+T K+ ++ E L KA Q +RAN VR+LE +N +R
Sbjct: 412 TLSSEREGIQLLKKGKQAVEESTAKRFTDKEIELRKACSQNDRANVIVRKLENQNAEIRA 471
Query: 651 EMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710
E E +KL A+ES +C E SK+EKK K +WEKQ Q+E+ EK K+ L + L Q
Sbjct: 472 EREGSKLSASESLKACMEASKKEKKCLKKLVAWEKQILKLQDEITAEKEKIKALYKTLAQ 531
Query: 711 AKALQEQLE 719
++++E
Sbjct: 532 ITEYEKEIE 540
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 48/224 (21%)
Query: 32 FRADPPLGEPNKIIPSPQNECPTYEFTAEKFDITPGHGQTGACDLCGVNQDHSDGLKLDL 91
FR+DPPL KI S + E PG +G+ +L V ++
Sbjct: 21 FRSDPPLCWVEKIAMS--------QSIVENLVYHPGLTDSGSVNLNSVTEN--------- 63
Query: 92 GLSSAVGSSEVGPSRPREELEVEEFQDADWSDLTESQLEELVLSNLDAIFKSAIKKIVAC 151
P E W+ TE LEE++L +L+ ++ A+ K++
Sbjct: 64 ---------------PEENF---------WAYCTEEHLEEILLKHLEFLYNQAVSKLLEL 99
Query: 152 GYMEEVATKAVLRSGLCYGSKDTVSNIVDNTLAFLRSGQEINSSR-------EHYFQDLP 204
GY E VA KAVL +G CYG D ++NIV+N+L++L SG S E F DL
Sbjct: 100 GYEERVALKAVLSNGHCYGELDVLTNIVNNSLSYLNSGGGGGGSNGNGEDRTETGFTDLR 159
Query: 205 QLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248
LE+Y LA ++ +L++V+P S GDAMWCLL+ +++V A +D
Sbjct: 160 DLEEYSLAGMIYLLQQVKPNLSKGDAMWCLLMSELHVGRASTLD 203
>sp|O75154|RFIP3_HUMAN Rab11 family-interacting protein 3 OS=Homo sapiens GN=RAB11FIP3
PE=1 SV=1
Length = 756
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 21/160 (13%)
Query: 551 LKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILE 610
L+L+ R L QL E A + V++ RR +KE + ++++EK I
Sbjct: 495 LQLVHRANALEEQLKEQELRACEMVLEETRR-------------QKELLCKMEREKSIEI 541
Query: 611 ENTMKKLSEM--ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668
EN +L ++ EN+ ++ +AN + RLE E L E+E+ LR +E + +
Sbjct: 542 ENLQTRLQQLDEENSELRSCTPCLKAN--IERLEEEKQKLLDEIESLTLRLSEEQENKRR 599
Query: 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708
+ R + +FQ + K Q EL+ + RK ++ LQ L
Sbjct: 600 MGDRLSHERHQFQ---RDKEATQ-ELIEDLRKQLEHLQLL 635
>sp|Q1MTN9|RLF2_SCHPO Chromatin assembly factor 1 subunit rlf2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rlf2 PE=3 SV=2
Length = 544
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 580 RRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVE------- 632
++L K +A+ + +RQ+ E ERLK+EK+ + KKL E E K ++E
Sbjct: 78 KKLQKQRAQEERIRQK--EAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERI 135
Query: 633 RANSAVRRLEVENTALRQEMEAAKLR 658
R RR E + LR++ EA +LR
Sbjct: 136 RLQEQQRRKEERDQKLREKEEAQRLR 161
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 38.9 bits (89), Expect = 0.15, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 577 QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANS 636
Q RL K++ ELK RQE+E +ER K+E+ EE +L E + ++R
Sbjct: 2742 QEQERLQKEE-ELK--RQEQERLEREKQEQLQKEE----ELKRQEQERLQKEEALKRQEQ 2794
Query: 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696
RL+ E RQE E + E +E+ ++E++ K ++ ++Q+ QE L
Sbjct: 2795 --ERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQE---QERLQK 2849
Query: 697 EKRKVVQLLQELDQAK 712
E+ Q + L++ K
Sbjct: 2850 EEELKRQEQERLERKK 2865
Score = 37.7 bits (86), Expect = 0.29, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 595 EKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654
+++E ERL+KE+++ + + E + L K + E RL+ E RQE E
Sbjct: 2740 KRQEQERLQKEEELKRQEQERLEREKQEQLQK---EEELKRQEQERLQKEEALKRQEQER 2796
Query: 655 AKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE---KRKVVQLLQELDQA 711
+ E QE + E++ Q + Q E+ K QE L E KR+ + LQ+ ++
Sbjct: 2797 LQ---KEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEEL 2853
Query: 712 KAL-QEQLE 719
K QE+LE
Sbjct: 2854 KRQEQERLE 2862
>sp|P46504|YLX8_CAEEL Uncharacterized protein F23F12.8 OS=Caenorhabditis elegans
GN=F23F12.8 PE=4 SV=2
Length = 980
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 585 DKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLE-- 642
+K E + LRQEKEE R + ++ LEE+ + +E++ + Q A R LE
Sbjct: 318 EKMEQERLRQEKEEKARELERRRKLEESETARQAELDRQATIYAEQERMAMERNRELERI 377
Query: 643 ------VENTALRQE---MEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEE 693
EN +RQE ME +K+R E ++ ++ K +++ + +K QEE
Sbjct: 378 RLEEKKRENERVRQEEIAMEISKIRELERL----QLERQRKNERVRQELEAARKYKLQEE 433
Query: 694 LVTEKRKVVQLLQELDQAK----ALQEQLEV 720
+RK+ Q E++Q + A QEQL V
Sbjct: 434 --ERQRKIQQQKVEMEQIRQQEEARQEQLRV 462
>sp|Q8CHD8|RFIP3_MOUSE Rab11 family-interacting protein 3 OS=Mus musculus GN=Rab11fip3
PE=1 SV=2
Length = 1047
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 551 LKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILE 610
L+L+ R L QL E A +KV++ R+ +KE + ++++EK I
Sbjct: 786 LQLVHRANALEEQLKEQEFRAQEKVLEETRK-------------QKELLCKMEREKSIEI 832
Query: 611 ENTMKKLSEM--ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668
EN +L ++ EN+ ++ +AN + RLE E + E+E R +E + ++
Sbjct: 833 ENLQARLQQLDEENSELRSCTPCLKAN--IERLEEEKQKMLDEIEELTQRLSEEQENKRK 890
Query: 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706
+ R + +FQ + K Q EL+ + RK ++ LQ
Sbjct: 891 MGDRLSHERHQFQ---RDKEATQ-ELIEDLRKQLEHLQ 924
>sp|P38989|SMC2_YEAST Structural maintenance of chromosomes protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC2 PE=1
SV=1
Length = 1170
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 16/149 (10%)
Query: 557 VRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKK 616
++ H + E E ++ + K E+ +L ++ EE+ +L+KEK++ +E T+ K
Sbjct: 242 IKHKHTSIRETLENGETRMKMLNEFVKKTSEEIDSLNEDVEEI-KLQKEKELHKEGTISK 300
Query: 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKR---- 672
L EN L ++ R +++ ++VEN L E +K +E A+S ++ ++
Sbjct: 301 LENKENGLL---NEISRLKTSL-SIKVEN--LNDTTEKSKALESEIASSSAKLIEKKSAY 354
Query: 673 ---EKKTQMKFQSWEKQKALF--QEELVT 696
EK +M + KQ+ L+ +EELV+
Sbjct: 355 ANTEKDYKMVQEQLSKQRDLYKRKEELVS 383
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 561 HNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEEN-------- 612
HN++ + E A QK SK +L L+Q EE+++ ++KQ+L E
Sbjct: 1415 HNEIQDKLEQAQQKERTLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQL 1474
Query: 613 --TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656
K + EM++A S +E+ + V LE TALRQ +A K
Sbjct: 1475 AEYQKVIDEMDDAASVKSALLEQLQNRVAELE---TALRQANDAQK 1517
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 34.3 bits (77), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 34/176 (19%)
Query: 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKE-----EVERLK--- 603
K + ++ EL+ QL E + V+Q + K++ L+ L+ E E E+ LK
Sbjct: 204 KYVEKIDELNKQLETLNE-SRSGVVQMVKLAEKERDNLEGLKDEAETYMLKELSHLKWQE 262
Query: 604 KEKQILEENTMKKLSE-------MENALCKASGQVERANSAVRRLEV--ENTALRQEMEA 654
K ++ E+T+ K++E +EN+L +++ +N +++ E E RQE+
Sbjct: 263 KATKMAYEDTVAKITEQRDSLQNLENSLKDERVKMDESNEELKKFESVHEKHKKRQEVLD 322
Query: 655 AKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710
+LRA C+E KF+ +E+Q +E+L K+K+ +L +L++
Sbjct: 323 NELRA------CKE----------KFKEFERQDVKHREDLKHVKQKIKKLEDKLEK 362
>sp|Q9JIR0|RIMB1_RAT Peripheral-type benzodiazepine receptor-associated protein 1
OS=Rattus norvegicus GN=Bzrap1 PE=1 SV=2
Length = 1847
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 22/225 (9%)
Query: 506 PTKSNSTQVPAGINSVAPNCGYAGILSDDTSLEHLVPQDKRDEIILKLIPRVRELHNQLH 565
P +S + P+ + + AP +L DD +V + ++ RV++L ++L
Sbjct: 289 PARSQGSTAPSSVGAPAPGAPGETVLEDDVESPQVVLGEPEKQL------RVQQLESELC 342
Query: 566 EWTEWANQKVMQAARRLSKDKAELK-TLRQEKEEVERLKKEKQILE-ENTMKKLSEMENA 623
+ + + + Q AR+ + EL+ LR + E RL +E L + T K+ E ENA
Sbjct: 343 KKRKKC-ESLEQEARKKQRRCEELELQLRAAQNENARLVEENSRLSGKATEKEQVEWENA 401
Query: 624 LCKAS--GQVERANSAVRR---LEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM 678
K G + +SA+R+ L+ + +L Q +E + + A Q++ + ++ ++
Sbjct: 402 ELKGQLLGVTQERDSALRKSQGLQSKLESLEQVLEHMR----KVAQRRQQLEEEHEQARL 457
Query: 679 KFQSWEKQKALFQEELVTEKRK---VVQLLQE-LDQAKALQEQLE 719
Q +++ Q+ KR+ VQLL+ LD +A +LE
Sbjct: 458 SLQEKQEEVRRLQQAQAEAKREHEGAVQLLESTLDSMQARVRELE 502
>sp|Q9BSW2|EFC4B_HUMAN EF-hand calcium-binding domain-containing protein 4B OS=Homo
sapiens GN=EFCAB4B PE=1 SV=1
Length = 395
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 9/177 (5%)
Query: 516 AGINSVAPNCGYAGILSDDTSLEHLVPQDKRDE--IILKLIPRVRELHNQLHEWTEWANQ 573
A + G +L D++ ++ L Q K++E ++ + + +QL E E N+
Sbjct: 158 AQFRMLMDRLGAQKVLEDESDVKQLWLQLKKEEPHLLSNFEDFLTRIISQLQEAHEEKNE 217
Query: 574 KVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILE--ENTMKKLSEMENALCKASGQV 631
R+++ E++ L +E E+ + +KE+ +L+ E + E+E L ++
Sbjct: 218 LECALKRKIAAYDEEIQHLYEEMEQQIKSEKEQFLLKDTERFQARSQELEQKLLCKEQEL 277
Query: 632 ERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKA 688
E+ +RLE + TAL + K + + QE+++ ++T SWE Q A
Sbjct: 278 EQLTQKQKRLEGQCTALHHDKHETKAENTKLKLTNQELARELERT-----SWELQDA 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,280,608
Number of Sequences: 539616
Number of extensions: 11411866
Number of successful extensions: 52024
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 1804
Number of HSP's that attempted gapping in prelim test: 43409
Number of HSP's gapped (non-prelim): 7864
length of query: 726
length of database: 191,569,459
effective HSP length: 125
effective length of query: 601
effective length of database: 124,117,459
effective search space: 74594592859
effective search space used: 74594592859
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)