Query 004861
Match_columns 726
No_of_seqs 117 out of 135
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 14:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 97.1 0.11 2.4E-06 62.6 25.1 17 680-696 345-361 (1164)
2 KOG0980 Actin-binding protein 97.0 0.31 6.7E-06 58.8 26.5 166 528-710 319-484 (980)
3 PRK09039 hypothetical protein; 96.6 0.18 4E-06 55.0 19.3 96 556-651 54-152 (343)
4 KOG1029 Endocytic adaptor prot 96.5 0.14 3E-06 61.0 18.1 112 593-722 349-460 (1118)
5 PRK02224 chromosome segregatio 96.3 0.91 2E-05 54.3 24.3 22 548-569 475-496 (880)
6 PRK03918 chromosome segregatio 96.2 1 2.2E-05 53.7 23.7 43 614-656 611-653 (880)
7 COG1196 Smc Chromosome segrega 96.1 1 2.2E-05 56.3 24.3 102 617-718 802-903 (1163)
8 PF00261 Tropomyosin: Tropomyo 96.1 0.61 1.3E-05 48.2 18.7 131 574-711 86-230 (237)
9 PF07888 CALCOCO1: Calcium bin 96.0 1.5 3.2E-05 51.2 23.2 33 681-713 353-385 (546)
10 PRK03918 chromosome segregatio 95.9 2.1 4.5E-05 51.2 24.9 71 582-653 202-276 (880)
11 KOG0963 Transcription factor/C 95.8 2.3 5E-05 50.0 23.8 183 543-725 140-343 (629)
12 PRK11637 AmiB activator; Provi 95.8 1.7 3.6E-05 48.4 21.8 9 556-564 48-56 (428)
13 PRK02224 chromosome segregatio 95.7 1.6 3.5E-05 52.3 22.6 19 548-566 468-486 (880)
14 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.7 0.73 1.6E-05 43.8 16.0 64 637-720 67-130 (132)
15 PRK11637 AmiB activator; Provi 95.4 1.9 4.2E-05 48.0 20.6 40 614-653 88-127 (428)
16 COG1196 Smc Chromosome segrega 95.3 4 8.6E-05 51.2 24.7 107 615-721 807-920 (1163)
17 PF10186 Atg14: UV radiation r 95.1 2.4 5.3E-05 43.6 19.1 127 581-713 21-147 (302)
18 PF05276 SH3BP5: SH3 domain-bi 95.0 6 0.00013 41.9 23.0 143 572-714 45-206 (239)
19 PF05701 WEMBL: Weak chloropla 94.6 6.5 0.00014 45.4 22.6 46 679-724 373-418 (522)
20 PF00261 Tropomyosin: Tropomyo 94.5 6.8 0.00015 40.6 23.0 135 586-720 63-197 (237)
21 KOG0250 DNA repair protein RAD 94.4 3.8 8.3E-05 50.9 21.0 148 563-718 299-448 (1074)
22 PHA02562 46 endonuclease subun 94.4 8.6 0.00019 43.6 22.5 7 547-553 153-159 (562)
23 TIGR01843 type_I_hlyD type I s 94.3 5.4 0.00012 43.0 20.0 24 574-597 152-175 (423)
24 KOG0161 Myosin class II heavy 94.3 6.2 0.00013 52.1 23.5 183 537-722 827-1029(1930)
25 PF09726 Macoilin: Transmembra 94.3 8 0.00017 46.5 22.9 38 614-651 544-581 (697)
26 TIGR00606 rad50 rad50. This fa 94.2 2.6 5.6E-05 53.4 19.8 21 616-636 766-786 (1311)
27 KOG0933 Structural maintenance 94.0 7 0.00015 48.5 21.7 158 552-710 745-917 (1174)
28 PF12718 Tropomyosin_1: Tropom 94.0 2.8 6E-05 40.9 15.3 116 589-722 2-117 (143)
29 PF08317 Spc7: Spc7 kinetochor 93.9 1.7 3.6E-05 47.1 15.1 37 680-716 232-268 (325)
30 KOG0612 Rho-associated, coiled 93.8 9.8 0.00021 48.1 22.8 56 545-600 462-528 (1317)
31 KOG0933 Structural maintenance 93.7 7 0.00015 48.5 21.0 161 546-707 760-935 (1174)
32 PRK04863 mukB cell division pr 93.7 3.6 7.8E-05 53.1 19.6 140 577-723 975-1119(1486)
33 KOG0980 Actin-binding protein 93.6 11 0.00024 46.3 22.2 152 547-706 357-522 (980)
34 PRK04863 mukB cell division pr 93.5 9.2 0.0002 49.6 22.7 32 573-604 307-338 (1486)
35 TIGR00606 rad50 rad50. This fa 93.3 6.2 0.00013 50.2 20.8 26 688-713 884-909 (1311)
36 KOG0250 DNA repair protein RAD 93.2 17 0.00037 45.6 23.2 114 611-724 312-426 (1074)
37 PF15070 GOLGA2L5: Putative go 92.8 10 0.00022 45.0 20.4 118 586-719 35-170 (617)
38 TIGR01843 type_I_hlyD type I s 92.5 6.6 0.00014 42.3 17.1 21 700-720 247-267 (423)
39 PF05911 DUF869: Plant protein 92.3 10 0.00022 46.2 19.7 98 618-724 606-705 (769)
40 KOG0995 Centromere-associated 92.3 9.9 0.00021 44.7 18.8 93 615-725 287-383 (581)
41 PRK04778 septation ring format 92.3 15 0.00033 42.8 20.6 106 613-718 315-430 (569)
42 KOG0161 Myosin class II heavy 92.1 24 0.00052 47.1 23.7 149 550-702 1296-1466(1930)
43 PF00769 ERM: Ezrin/radixin/mo 91.9 8.4 0.00018 40.6 16.4 38 613-650 10-47 (246)
44 KOG0978 E3 ubiquitin ligase in 91.8 19 0.00041 43.5 20.9 115 599-713 498-615 (698)
45 COG0419 SbcC ATPase involved i 91.8 37 0.00081 41.7 24.1 101 613-713 310-417 (908)
46 PF15066 CAGE1: Cancer-associa 91.8 19 0.00041 41.7 19.8 118 572-695 357-502 (527)
47 PF13514 AAA_27: AAA domain 91.7 22 0.00047 44.6 22.3 32 541-572 719-750 (1111)
48 cd07627 BAR_Vps5p The Bin/Amph 91.6 18 0.00038 37.0 20.9 109 613-725 47-169 (216)
49 KOG2412 Nuclear-export-signal 91.3 4.7 0.0001 47.0 14.8 94 611-707 178-272 (591)
50 PF10481 CENP-F_N: Cenp-F N-te 91.2 2.3 5E-05 45.9 11.5 120 540-663 3-136 (307)
51 KOG4403 Cell surface glycoprot 91.1 4.1 8.9E-05 46.5 13.8 32 694-725 392-423 (575)
52 KOG4674 Uncharacterized conser 91.0 28 0.0006 46.1 22.4 117 597-714 696-820 (1822)
53 PF13514 AAA_27: AAA domain 91.0 19 0.00042 45.1 20.9 112 535-647 138-274 (1111)
54 PF12128 DUF3584: Protein of u 91.0 17 0.00037 46.1 20.5 13 525-537 581-593 (1201)
55 PF10186 Atg14: UV radiation r 90.9 22 0.00047 36.8 19.1 86 615-707 70-155 (302)
56 KOG0996 Structural maintenance 90.7 25 0.00054 44.6 20.8 35 683-717 954-988 (1293)
57 KOG0979 Structural maintenance 90.7 12 0.00027 46.5 18.1 36 676-711 323-358 (1072)
58 COG0419 SbcC ATPase involved i 90.6 39 0.00085 41.5 22.6 27 562-588 525-551 (908)
59 PF05667 DUF812: Protein of un 90.1 15 0.00033 43.5 17.9 86 622-710 394-479 (594)
60 TIGR02680 conserved hypothetic 90.1 21 0.00046 45.9 20.5 142 550-718 239-380 (1353)
61 PF04156 IncA: IncA protein; 90.1 16 0.00034 36.1 15.7 81 615-709 109-189 (191)
62 KOG0979 Structural maintenance 90.1 58 0.0013 41.0 22.9 186 528-724 136-357 (1072)
63 PF13166 AAA_13: AAA domain 90.1 46 0.00099 39.2 22.8 105 616-723 364-469 (712)
64 PF04111 APG6: Autophagy prote 90.0 4 8.8E-05 44.3 12.4 119 587-713 16-134 (314)
65 KOG0976 Rho/Rac1-interacting s 89.7 15 0.00032 45.0 17.3 130 589-725 50-206 (1265)
66 KOG0612 Rho-associated, coiled 89.5 31 0.00068 43.9 20.4 53 601-653 505-560 (1317)
67 PF05701 WEMBL: Weak chloropla 89.3 49 0.0011 38.5 23.1 10 588-597 250-259 (522)
68 PF04012 PspA_IM30: PspA/IM30 89.3 8.9 0.00019 38.8 13.6 101 617-719 32-132 (221)
69 TIGR02971 heterocyst_DevB ABC 89.2 22 0.00048 37.7 16.9 46 617-662 99-147 (327)
70 PF15070 GOLGA2L5: Putative go 89.1 21 0.00045 42.6 18.2 69 645-713 141-209 (617)
71 smart00787 Spc7 Spc7 kinetocho 89.1 26 0.00057 38.4 17.7 99 617-715 153-262 (312)
72 TIGR02977 phageshock_pspA phag 89.0 17 0.00036 37.4 15.4 108 614-721 30-142 (219)
73 COG2433 Uncharacterized conser 88.9 23 0.00049 42.2 17.9 166 541-716 322-512 (652)
74 PF12128 DUF3584: Protein of u 88.8 78 0.0017 40.4 23.8 51 548-598 614-667 (1201)
75 PF05911 DUF869: Plant protein 88.6 6.1 0.00013 48.0 13.6 114 597-710 596-751 (769)
76 COG4942 Membrane-bound metallo 88.6 10 0.00022 43.2 14.5 103 551-661 157-263 (420)
77 PF00038 Filament: Intermediat 88.6 36 0.00078 36.0 22.3 122 589-715 171-292 (312)
78 PF05667 DUF812: Protein of un 88.5 29 0.00063 41.2 18.7 138 549-697 336-480 (594)
79 PF11559 ADIP: Afadin- and alp 88.4 13 0.00028 35.7 13.4 75 613-687 50-127 (151)
80 PRK01156 chromosome segregatio 88.2 28 0.00061 42.3 19.0 29 680-708 690-718 (895)
81 PF10174 Cast: RIM-binding pro 88.2 39 0.00085 41.4 19.8 142 579-720 550-706 (775)
82 PRK11281 hypothetical protein; 87.9 12 0.00026 47.3 15.9 88 570-658 84-171 (1113)
83 PF09730 BicD: Microtubule-ass 87.9 17 0.00037 44.0 16.5 115 601-715 20-144 (717)
84 PRK09039 hypothetical protein; 87.7 10 0.00023 41.7 13.7 36 612-647 71-106 (343)
85 PRK10246 exonuclease subunit S 87.5 90 0.0019 39.3 24.5 29 674-702 369-397 (1047)
86 PF09726 Macoilin: Transmembra 87.4 54 0.0012 39.8 20.2 152 546-714 416-581 (697)
87 TIGR00618 sbcc exonuclease Sbc 87.3 89 0.0019 39.1 23.4 45 677-721 371-415 (1042)
88 PF07058 Myosin_HC-like: Myosi 87.3 16 0.00034 40.4 14.4 86 637-722 67-152 (351)
89 PF08317 Spc7: Spc7 kinetochor 87.1 46 0.00099 36.3 18.0 30 553-583 126-155 (325)
90 PF07888 CALCOCO1: Calcium bin 87.0 73 0.0016 37.8 23.7 56 592-651 180-235 (546)
91 COG1340 Uncharacterized archae 86.9 53 0.0012 36.1 23.1 165 555-721 69-243 (294)
92 KOG4673 Transcription factor T 86.8 58 0.0013 39.7 19.4 165 543-714 575-761 (961)
93 PF02845 CUE: CUE domain; Int 86.7 1.3 2.8E-05 34.3 4.5 35 213-247 3-37 (42)
94 PRK10884 SH3 domain-containing 86.6 11 0.00023 39.2 12.2 88 610-724 88-175 (206)
95 TIGR00618 sbcc exonuclease Sbc 86.6 97 0.0021 38.8 23.8 105 544-649 163-280 (1042)
96 COG1340 Uncharacterized archae 86.5 36 0.00078 37.4 16.6 120 552-681 135-275 (294)
97 smart00546 CUE Domain that may 86.5 1.4 2.9E-05 34.2 4.5 36 212-247 3-38 (43)
98 PF10174 Cast: RIM-binding pro 86.2 88 0.0019 38.6 21.3 138 545-700 298-458 (775)
99 COG1842 PspA Phage shock prote 86.1 17 0.00038 38.1 13.7 108 614-723 30-144 (225)
100 PF00038 Filament: Intermediat 85.9 51 0.0011 34.9 21.0 11 587-597 103-113 (312)
101 KOG0996 Structural maintenance 85.7 86 0.0019 40.2 20.9 46 613-658 424-469 (1293)
102 KOG0964 Structural maintenance 85.7 55 0.0012 41.2 19.0 140 575-721 263-447 (1200)
103 KOG0964 Structural maintenance 85.5 40 0.00088 42.3 17.8 123 589-711 200-347 (1200)
104 TIGR01005 eps_transp_fam exopo 85.4 28 0.0006 41.6 16.6 28 615-642 237-264 (754)
105 PF05600 DUF773: Protein of un 85.3 17 0.00037 42.2 14.4 129 580-721 354-493 (507)
106 PF07246 Phlebovirus_NSM: Phle 85.3 5.2 0.00011 43.0 9.5 91 544-647 151-241 (264)
107 PRK04778 septation ring format 85.3 84 0.0018 36.9 21.1 162 552-720 169-369 (569)
108 PF06818 Fez1: Fez1; InterPro 85.3 52 0.0011 34.4 16.5 144 553-710 15-184 (202)
109 KOG0976 Rho/Rac1-interacting s 85.2 82 0.0018 39.1 19.8 134 547-707 255-408 (1265)
110 KOG0994 Extracellular matrix g 84.9 45 0.00096 42.7 17.9 145 570-724 1412-1588(1758)
111 PF02841 GBP_C: Guanylate-bind 84.7 61 0.0013 34.8 22.7 35 544-578 92-126 (297)
112 KOG2891 Surface glycoprotein [ 84.7 33 0.00072 37.7 15.1 45 670-714 392-436 (445)
113 PF15369 KIAA1328: Uncharacter 84.5 8.7 0.00019 42.5 10.9 93 580-718 8-101 (328)
114 PF09325 Vps5: Vps5 C terminal 84.5 48 0.001 33.4 18.3 160 546-725 22-189 (236)
115 PF03962 Mnd1: Mnd1 family; I 84.5 9.7 0.00021 38.7 10.7 83 626-716 66-152 (188)
116 PF15619 Lebercilin: Ciliary p 84.5 52 0.0011 33.8 20.7 92 614-719 81-184 (194)
117 PRK10698 phage shock protein P 84.4 26 0.00057 36.4 14.0 108 615-722 31-143 (222)
118 PRK09841 cryptic autophosphory 84.1 46 0.001 40.0 17.7 133 561-715 262-400 (726)
119 PRK10246 exonuclease subunit S 83.9 1.3E+02 0.0028 37.9 24.7 32 683-714 827-858 (1047)
120 PRK10884 SH3 domain-containing 83.8 13 0.00029 38.5 11.4 20 525-545 65-84 (206)
121 PF04012 PspA_IM30: PspA/IM30 83.8 22 0.00048 36.0 13.0 102 620-723 28-129 (221)
122 PRK12704 phosphodiesterase; Pr 83.8 97 0.0021 36.3 20.4 71 614-684 81-151 (520)
123 PF06705 SF-assemblin: SF-asse 83.6 60 0.0013 33.9 18.8 125 550-686 94-218 (247)
124 KOG2891 Surface glycoprotein [ 82.9 62 0.0013 35.7 16.2 27 587-613 285-315 (445)
125 KOG0240 Kinesin (SMY1 subfamil 82.8 20 0.00043 42.4 13.4 105 613-724 489-597 (607)
126 PF01576 Myosin_tail_1: Myosin 82.7 0.42 9E-06 58.1 0.2 167 552-725 662-832 (859)
127 TIGR00634 recN DNA repair prot 82.5 69 0.0015 37.3 17.8 26 686-711 347-372 (563)
128 KOG4643 Uncharacterized coiled 82.1 58 0.0013 41.1 17.3 162 550-722 179-345 (1195)
129 COG4942 Membrane-bound metallo 82.1 90 0.0019 36.0 17.9 59 573-645 52-110 (420)
130 TIGR03794 NHPM_micro_HlyD NHPM 82.0 80 0.0017 35.1 17.4 27 615-641 139-165 (421)
131 TIGR02894 DNA_bind_RsfA transc 81.6 11 0.00024 38.0 9.5 89 634-722 51-141 (161)
132 PF05615 THOC7: Tho complex su 81.2 40 0.00086 32.2 12.9 96 610-719 14-115 (139)
133 COG1579 Zn-ribbon protein, pos 81.2 82 0.0018 33.7 22.0 33 644-676 90-122 (239)
134 PRK10929 putative mechanosensi 80.5 88 0.0019 40.0 18.7 92 611-703 147-240 (1109)
135 PF06248 Zw10: Centromere/kine 80.4 95 0.0021 36.4 18.1 104 547-656 13-116 (593)
136 KOG0977 Nuclear envelope prote 80.4 68 0.0015 38.0 16.7 80 577-656 103-189 (546)
137 TIGR02680 conserved hypothetic 79.9 2E+02 0.0044 37.5 25.2 89 625-713 878-970 (1353)
138 PF13904 DUF4207: Domain of un 79.8 76 0.0016 33.9 15.7 50 673-724 179-228 (264)
139 TIGR01541 tape_meas_lam_C phag 79.7 1.1E+02 0.0023 34.1 18.5 31 552-585 5-35 (332)
140 PF13166 AAA_13: AAA domain 79.6 1.4E+02 0.003 35.3 22.1 36 621-656 362-397 (712)
141 TIGR01005 eps_transp_fam exopo 79.4 1.5E+02 0.0032 35.6 21.7 27 568-594 196-222 (754)
142 TIGR01010 BexC_CtrB_KpsE polys 79.3 1E+02 0.0022 33.6 17.5 134 565-716 169-309 (362)
143 COG1579 Zn-ribbon protein, pos 79.2 95 0.0021 33.2 19.0 36 679-714 111-146 (239)
144 PTZ00266 NIMA-related protein 79.1 52 0.0011 41.6 16.1 11 538-548 424-434 (1021)
145 PF15456 Uds1: Up-regulated Du 78.9 10 0.00023 36.5 8.1 43 596-639 21-66 (124)
146 smart00787 Spc7 Spc7 kinetocho 78.7 45 0.00098 36.6 13.9 6 409-414 73-78 (312)
147 TIGR03185 DNA_S_dndD DNA sulfu 78.2 1.5E+02 0.0033 35.2 19.0 22 573-594 391-412 (650)
148 PF14988 DUF4515: Domain of un 78.2 90 0.0019 32.4 20.4 17 545-561 15-31 (206)
149 PRK10476 multidrug resistance 77.9 48 0.001 35.7 13.8 21 641-661 143-163 (346)
150 PF05266 DUF724: Protein of un 77.8 37 0.00081 34.8 12.2 50 614-663 137-186 (190)
151 TIGR01000 bacteriocin_acc bact 77.7 1.3E+02 0.0028 34.1 17.5 31 687-717 286-316 (457)
152 PF10481 CENP-F_N: Cenp-F N-te 77.2 64 0.0014 35.4 14.0 118 564-712 5-122 (307)
153 PF14197 Cep57_CLD_2: Centroso 76.6 12 0.00026 32.7 7.1 52 574-653 13-64 (69)
154 KOG0994 Extracellular matrix g 76.6 2.5E+02 0.0054 36.6 20.9 39 555-593 1594-1632(1758)
155 TIGR03017 EpsF chain length de 76.5 1.3E+02 0.0028 33.4 20.9 29 567-595 172-200 (444)
156 KOG0018 Structural maintenance 76.4 37 0.00081 42.8 13.5 79 630-722 677-755 (1141)
157 PF05483 SCP-1: Synaptonemal c 76.2 2E+02 0.0043 35.3 22.6 142 563-705 392-533 (786)
158 PRK00409 recombination and DNA 76.0 85 0.0019 38.5 16.5 41 203-247 243-283 (782)
159 KOG4673 Transcription factor T 75.1 1.7E+02 0.0036 36.0 17.7 20 700-719 772-791 (961)
160 KOG0243 Kinesin-like protein [ 75.0 1.6E+02 0.0035 37.5 18.4 12 138-149 110-121 (1041)
161 PF05557 MAD: Mitotic checkpoi 74.5 0.99 2.1E-05 53.6 0.0 99 570-668 118-217 (722)
162 PRK11519 tyrosine kinase; Prov 74.4 1.5E+02 0.0032 35.8 17.8 31 566-596 267-297 (719)
163 PF15254 CCDC14: Coiled-coil d 74.1 61 0.0013 39.8 14.2 63 586-663 343-416 (861)
164 KOG0982 Centrosomal protein Nu 74.0 1.8E+02 0.004 33.9 19.5 77 626-709 294-370 (502)
165 PF05483 SCP-1: Synaptonemal c 73.8 2.3E+02 0.0049 34.9 19.6 23 629-651 601-623 (786)
166 PF02050 FliJ: Flagellar FliJ 73.3 63 0.0014 28.2 13.1 22 635-656 51-72 (123)
167 PF09755 DUF2046: Uncharacteri 73.0 1.6E+02 0.0035 32.8 17.4 99 589-695 86-202 (310)
168 PRK15136 multidrug efflux syst 72.8 34 0.00073 38.0 11.3 12 645-656 153-164 (390)
169 PF09787 Golgin_A5: Golgin sub 72.8 1.9E+02 0.0042 33.6 18.3 32 680-711 276-307 (511)
170 PF06160 EzrA: Septation ring 72.6 2E+02 0.0044 33.8 19.9 141 552-699 165-334 (560)
171 COG4487 Uncharacterized protei 72.3 2E+02 0.0043 33.5 21.0 39 559-597 39-77 (438)
172 PF10146 zf-C4H2: Zinc finger- 72.2 52 0.0011 34.8 11.8 80 573-652 8-97 (230)
173 PF07798 DUF1640: Protein of u 72.1 79 0.0017 31.6 12.7 25 639-663 134-158 (177)
174 PF04111 APG6: Autophagy prote 72.1 56 0.0012 35.8 12.5 26 631-656 45-70 (314)
175 PF10473 CENP-F_leu_zip: Leuci 71.8 1.1E+02 0.0024 30.3 14.2 42 616-657 4-45 (140)
176 PF08581 Tup_N: Tup N-terminal 71.5 25 0.00055 31.6 8.0 50 605-655 26-76 (79)
177 TIGR00998 8a0101 efflux pump m 71.4 49 0.0011 35.0 11.6 72 581-659 81-155 (334)
178 KOG0978 E3 ubiquitin ligase in 71.3 2.6E+02 0.0055 34.4 23.3 183 528-724 376-584 (698)
179 TIGR03185 DNA_S_dndD DNA sulfu 71.3 2.3E+02 0.0049 33.8 20.8 11 619-629 402-412 (650)
180 PRK10361 DNA recombination pro 71.3 2.1E+02 0.0047 33.5 19.3 57 616-672 54-110 (475)
181 smart00502 BBC B-Box C-termina 71.2 76 0.0016 28.2 14.2 66 618-683 3-68 (127)
182 TIGR03495 phage_LysB phage lys 71.0 48 0.0011 32.6 10.5 78 589-684 21-98 (135)
183 PF15397 DUF4618: Domain of un 70.9 1.6E+02 0.0035 31.9 18.1 50 660-712 171-220 (258)
184 PTZ00121 MAEBL; Provisional 70.6 3.7E+02 0.0081 36.0 21.0 19 687-705 1756-1774(2084)
185 KOG0249 LAR-interacting protei 70.5 1.9E+02 0.0041 35.7 16.9 143 554-705 107-257 (916)
186 PF12325 TMF_TATA_bd: TATA ele 70.2 88 0.0019 30.1 11.9 76 627-706 14-89 (120)
187 PF05278 PEARLI-4: Arabidopsis 70.1 1E+02 0.0022 33.7 13.6 96 613-720 147-242 (269)
188 PF09731 Mitofilin: Mitochondr 70.0 2.2E+02 0.0048 33.2 22.8 42 542-583 245-286 (582)
189 PRK00106 hypothetical protein; 69.6 2.4E+02 0.0053 33.5 23.5 85 602-686 81-168 (535)
190 KOG0977 Nuclear envelope prote 69.4 2.5E+02 0.0054 33.6 18.6 96 576-671 109-211 (546)
191 PF09730 BicD: Microtubule-ass 69.2 86 0.0019 38.4 14.1 95 586-712 372-467 (717)
192 PF05557 MAD: Mitotic checkpoi 69.1 17 0.00038 43.4 8.5 64 635-708 565-629 (722)
193 PF12808 Mto2_bdg: Micro-tubul 69.0 12 0.00026 31.4 5.1 43 614-656 3-49 (52)
194 PF05700 BCAS2: Breast carcino 69.0 42 0.0009 34.8 10.2 71 582-655 145-215 (221)
195 PF05262 Borrelia_P83: Borreli 68.7 2.5E+02 0.0053 33.2 17.3 10 352-361 136-145 (489)
196 PF11802 CENP-K: Centromere-as 68.6 1.2E+02 0.0025 33.2 13.6 23 547-569 51-73 (268)
197 TIGR03319 YmdA_YtgF conserved 68.5 2.4E+02 0.0053 33.1 21.5 67 614-680 75-141 (514)
198 PF05278 PEARLI-4: Arabidopsis 68.3 1.9E+02 0.0041 31.7 16.3 41 665-705 222-262 (269)
199 PRK11281 hypothetical protein; 68.3 3.5E+02 0.0077 34.9 19.6 35 685-719 285-319 (1113)
200 PRK10869 recombination and rep 68.2 2.5E+02 0.0054 33.1 19.9 51 673-723 329-384 (553)
201 KOG0239 Kinesin (KAR3 subfamil 68.0 2.6E+02 0.0056 34.1 17.7 28 691-718 282-309 (670)
202 KOG4674 Uncharacterized conser 68.0 4.4E+02 0.0096 35.8 23.7 143 547-696 1270-1426(1822)
203 PF00769 ERM: Ezrin/radixin/mo 67.9 1.7E+02 0.0037 31.0 15.6 93 615-714 26-118 (246)
204 PF06818 Fez1: Fez1; InterPro 67.8 1.3E+02 0.0028 31.6 13.4 133 581-720 25-184 (202)
205 TIGR02231 conserved hypothetic 67.7 37 0.0008 39.0 10.5 35 616-650 72-106 (525)
206 PRK11519 tyrosine kinase; Prov 66.7 1.2E+02 0.0026 36.6 14.8 42 681-722 342-383 (719)
207 KOG1029 Endocytic adaptor prot 66.6 3.4E+02 0.0074 34.0 20.6 32 149-188 27-59 (1118)
208 TIGR03752 conj_TIGR03752 integ 66.5 47 0.001 38.7 10.8 75 629-709 66-140 (472)
209 KOG2991 Splicing regulator [RN 66.5 2.1E+02 0.0045 31.5 18.4 114 596-715 176-308 (330)
210 PF07106 TBPIP: Tat binding pr 66.5 37 0.0008 33.4 8.9 48 610-657 67-114 (169)
211 PRK03598 putative efflux pump 66.4 92 0.002 33.3 12.5 25 691-715 177-201 (331)
212 PRK10476 multidrug resistance 66.3 86 0.0019 33.9 12.4 22 581-602 87-108 (346)
213 TIGR02231 conserved hypothetic 65.9 57 0.0012 37.5 11.5 18 692-709 152-169 (525)
214 PF15294 Leu_zip: Leucine zipp 65.7 86 0.0019 34.3 12.1 39 683-724 213-251 (278)
215 cd07623 BAR_SNX1_2 The Bin/Amp 65.4 1.7E+02 0.0038 30.2 21.6 152 547-724 11-174 (224)
216 PF09766 FimP: Fms-interacting 64.9 2.3E+02 0.0051 31.6 15.9 43 677-719 107-149 (355)
217 PF10212 TTKRSYEDQ: Predicted 64.8 3E+02 0.0065 32.7 17.5 70 642-718 419-489 (518)
218 PF04849 HAP1_N: HAP1 N-termin 64.6 1.5E+02 0.0032 33.0 13.7 133 590-725 104-253 (306)
219 PF10168 Nup88: Nuclear pore c 64.1 3.5E+02 0.0075 33.3 22.7 30 684-713 684-713 (717)
220 PF09789 DUF2353: Uncharacteri 64.0 2E+02 0.0043 32.2 14.6 52 548-599 30-98 (319)
221 TIGR03319 YmdA_YtgF conserved 63.5 3E+02 0.0066 32.3 16.8 17 608-624 55-71 (514)
222 PF05529 Bap31: B-cell recepto 63.3 59 0.0013 32.6 9.8 64 640-716 122-185 (192)
223 PRK13729 conjugal transfer pil 63.3 24 0.00051 41.0 7.8 19 639-657 107-125 (475)
224 PF09787 Golgin_A5: Golgin sub 61.9 3.1E+02 0.0067 31.9 20.2 70 625-694 277-346 (511)
225 TIGR03007 pepcterm_ChnLen poly 61.8 2.8E+02 0.0061 31.4 17.8 41 614-654 253-293 (498)
226 KOG0946 ER-Golgi vesicle-tethe 61.4 1.8E+02 0.0039 36.3 14.6 46 676-721 902-947 (970)
227 PF10168 Nup88: Nuclear pore c 61.4 3.9E+02 0.0084 32.9 17.8 24 691-714 638-661 (717)
228 TIGR03017 EpsF chain length de 61.3 2.7E+02 0.0058 31.0 23.6 37 616-652 262-298 (444)
229 KOG0804 Cytoplasmic Zn-finger 61.2 2.3E+02 0.005 33.2 14.8 36 673-708 405-444 (493)
230 KOG1853 LIS1-interacting prote 61.1 2.6E+02 0.0056 30.8 20.2 99 548-650 20-126 (333)
231 KOG0163 Myosin class VI heavy 60.9 4.3E+02 0.0093 33.2 17.9 138 543-712 860-1007(1259)
232 PF05262 Borrelia_P83: Borreli 60.9 3.2E+02 0.0068 32.3 16.2 7 333-339 76-82 (489)
233 TIGR02977 phageshock_pspA phag 60.9 2.1E+02 0.0045 29.6 14.1 100 621-720 30-134 (219)
234 PF01576 Myosin_tail_1: Myosin 60.7 2.8 6.1E-05 51.2 0.0 164 550-724 576-754 (859)
235 PF05622 HOOK: HOOK protein; 60.7 2.8 6.1E-05 49.8 0.0 52 578-629 306-360 (713)
236 cd07673 F-BAR_FCHO2 The F-BAR 60.0 2.4E+02 0.0052 30.2 14.1 16 675-690 193-208 (269)
237 KOG0018 Structural maintenance 59.4 3.6E+02 0.0078 34.7 17.0 94 614-710 219-314 (1141)
238 PF09731 Mitofilin: Mitochondr 59.0 3.5E+02 0.0076 31.6 21.0 21 217-239 35-55 (582)
239 PF14712 Snapin_Pallidin: Snap 58.9 96 0.0021 27.4 9.3 79 626-705 11-91 (92)
240 PRK00409 recombination and DNA 58.8 1.4E+02 0.003 36.8 13.5 128 575-709 490-624 (782)
241 PF04642 DUF601: Protein of un 58.6 80 0.0017 34.4 10.1 79 574-657 162-245 (311)
242 PF05335 DUF745: Protein of un 57.8 2.4E+02 0.0051 29.3 16.5 72 573-658 49-124 (188)
243 PF11932 DUF3450: Protein of u 57.6 1.9E+02 0.0041 30.2 12.7 42 679-720 64-105 (251)
244 TIGR01069 mutS2 MutS2 family p 57.1 3.4E+02 0.0075 33.4 16.4 41 203-247 238-278 (771)
245 PRK03598 putative efflux pump 57.0 1E+02 0.0023 32.9 11.0 41 679-721 160-200 (331)
246 KOG4643 Uncharacterized coiled 56.8 5.5E+02 0.012 33.2 19.6 129 545-679 195-371 (1195)
247 PF05335 DUF745: Protein of un 56.5 2.5E+02 0.0054 29.1 16.6 120 545-671 64-186 (188)
248 PRK09841 cryptic autophosphory 56.3 2.9E+02 0.0063 33.5 15.5 41 681-721 342-382 (726)
249 PF09802 Sec66: Preprotein tra 56.1 2.4E+02 0.0051 29.4 12.7 114 536-671 37-154 (190)
250 COG4026 Uncharacterized protei 56.0 1.2E+02 0.0026 32.6 10.8 82 636-722 105-186 (290)
251 PF08614 ATG16: Autophagy prot 55.9 1.2E+02 0.0027 30.6 10.7 43 682-724 141-183 (194)
252 PRK10929 putative mechanosensi 55.8 5.8E+02 0.013 33.1 20.5 34 686-719 266-299 (1109)
253 PF14662 CCDC155: Coiled-coil 55.5 2.7E+02 0.0058 29.2 19.8 141 550-710 38-190 (193)
254 PF06637 PV-1: PV-1 protein (P 55.5 1.1E+02 0.0024 35.0 11.0 34 636-673 292-325 (442)
255 PF14362 DUF4407: Domain of un 55.1 2.9E+02 0.0063 29.5 16.3 75 573-656 78-162 (301)
256 KOG0971 Microtubule-associated 55.0 5.7E+02 0.012 32.8 21.5 93 555-654 258-357 (1243)
257 COG1842 PspA Phage shock prote 54.2 2.9E+02 0.0063 29.2 16.4 37 684-720 112-148 (225)
258 KOG0804 Cytoplasmic Zn-finger 54.2 1.6E+02 0.0036 34.3 12.2 17 692-708 410-426 (493)
259 PRK10698 phage shock protein P 53.6 2.9E+02 0.0062 28.9 13.6 31 686-716 100-130 (222)
260 PRK10093 primosomal replicatio 52.7 1.6E+02 0.0035 30.2 10.7 89 627-718 61-169 (171)
261 PF12777 MT: Microtubule-bindi 52.4 48 0.001 36.4 7.6 42 613-654 219-260 (344)
262 PF14932 HAUS-augmin3: HAUS au 51.8 80 0.0017 33.5 8.9 82 547-631 67-148 (256)
263 PF06156 DUF972: Protein of un 51.6 42 0.0009 31.7 6.1 48 615-662 8-55 (107)
264 PLN02718 Probable galacturonos 51.4 1.4E+02 0.0031 35.9 11.6 80 581-660 185-267 (603)
265 cd00632 Prefoldin_beta Prefold 51.1 1.6E+02 0.0034 27.0 9.7 86 553-656 4-97 (105)
266 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.1 2.3E+02 0.005 27.1 13.3 34 690-723 64-97 (132)
267 PF14817 HAUS5: HAUS augmin-li 51.0 1.8E+02 0.0039 35.2 12.5 87 633-719 83-169 (632)
268 COG1566 EmrA Multidrug resista 50.5 1.4E+02 0.0031 33.5 10.9 6 528-533 65-70 (352)
269 COG3206 GumC Uncharacterized p 50.4 4E+02 0.0087 30.2 14.7 87 620-719 297-383 (458)
270 cd07596 BAR_SNX The Bin/Amphip 49.8 2.6E+02 0.0056 27.3 20.2 158 547-725 3-171 (218)
271 TIGR01069 mutS2 MutS2 family p 49.4 2.3E+02 0.0049 35.0 13.3 119 575-704 485-608 (771)
272 PF07111 HCR: Alpha helical co 49.2 6.1E+02 0.013 31.4 18.6 44 544-592 62-106 (739)
273 PF04912 Dynamitin: Dynamitin 49.2 1.9E+02 0.0041 32.3 11.7 70 555-643 295-364 (388)
274 KOG3119 Basic region leucine z 49.0 79 0.0017 33.9 8.4 59 639-718 197-255 (269)
275 PF10212 TTKRSYEDQ: Predicted 48.9 5.4E+02 0.012 30.7 15.5 88 621-712 419-514 (518)
276 PF05791 Bacillus_HBL: Bacillu 48.6 2.9E+02 0.0063 27.9 12.0 38 545-582 45-82 (184)
277 KOG0962 DNA repair protein RAD 48.2 7.9E+02 0.017 32.5 20.5 27 544-570 774-800 (1294)
278 KOG4360 Uncharacterized coiled 47.8 1.9E+02 0.0041 34.4 11.5 63 540-602 190-262 (596)
279 KOG0243 Kinesin-like protein [ 47.7 7.4E+02 0.016 32.0 17.7 11 536-546 426-436 (1041)
280 PF07798 DUF1640: Protein of u 47.1 2.4E+02 0.0053 28.2 11.1 82 638-719 53-148 (177)
281 PF05622 HOOK: HOOK protein; 47.1 6.3 0.00014 47.0 0.0 75 644-719 292-366 (713)
282 PRK13428 F0F1 ATP synthase sub 47.1 3.4E+02 0.0074 31.2 13.5 19 592-610 37-55 (445)
283 KOG1821 Uncharacterized conser 46.3 44 0.00096 38.3 6.3 94 604-705 554-653 (662)
284 cd07675 F-BAR_FNBP1L The F-BAR 46.2 4.1E+02 0.009 28.7 17.9 47 560-606 68-122 (252)
285 PRK10636 putative ABC transpor 46.1 56 0.0012 38.7 7.5 51 675-725 567-624 (638)
286 PF01486 K-box: K-box region; 45.9 73 0.0016 28.9 6.6 69 584-652 16-98 (100)
287 PF11559 ADIP: Afadin- and alp 45.5 2.9E+02 0.0062 26.6 17.2 79 599-681 68-146 (151)
288 PF12925 APP_E2: E2 domain of 45.4 1.2E+02 0.0026 31.6 8.7 64 598-661 24-106 (193)
289 PF10211 Ax_dynein_light: Axon 45.2 3.6E+02 0.0077 27.6 12.6 39 562-600 102-140 (189)
290 PRK11578 macrolide transporter 44.8 99 0.0021 33.7 8.6 61 580-644 113-173 (370)
291 PF09755 DUF2046: Uncharacteri 44.4 5E+02 0.011 29.1 18.3 108 559-666 124-259 (310)
292 KOG1937 Uncharacterized conser 44.4 6.1E+02 0.013 30.0 19.5 151 554-723 344-519 (521)
293 PF09304 Cortex-I_coil: Cortex 44.3 3E+02 0.0065 26.5 13.7 40 619-658 41-80 (107)
294 KOG0999 Microtubule-associated 44.1 5.4E+02 0.012 31.2 14.4 103 607-709 93-211 (772)
295 PF04568 IATP: Mitochondrial A 43.9 95 0.0021 29.2 7.1 35 668-708 65-99 (100)
296 cd03190 GST_C_ECM4_like GST_C 43.9 74 0.0016 30.0 6.6 25 558-582 2-26 (142)
297 PF08429 PLU-1: PLU-1-like pro 43.3 4.5E+02 0.0098 28.3 13.6 133 576-723 141-274 (335)
298 PRK13729 conjugal transfer pil 42.6 78 0.0017 37.0 7.6 46 581-633 77-122 (475)
299 KOG0247 Kinesin-like protein [ 42.6 2.6E+02 0.0056 34.6 12.0 54 559-612 513-570 (809)
300 COG4026 Uncharacterized protei 42.5 95 0.0021 33.4 7.6 53 588-651 132-185 (290)
301 PF10234 Cluap1: Clusterin-ass 42.3 4.3E+02 0.0094 28.9 12.7 28 625-652 172-199 (267)
302 KOG4657 Uncharacterized conser 42.1 4.3E+02 0.0092 28.6 12.2 45 611-655 61-105 (246)
303 KOG2751 Beclin-like protein [S 42.0 1.5E+02 0.0033 34.4 9.6 50 670-723 218-267 (447)
304 TIGR03752 conj_TIGR03752 integ 41.6 2.1E+02 0.0046 33.5 10.8 20 547-566 58-77 (472)
305 KOG0963 Transcription factor/C 41.4 7.5E+02 0.016 30.2 19.3 111 550-666 123-258 (629)
306 TIGR03007 pepcterm_ChnLen poly 41.3 5.8E+02 0.013 29.0 21.2 33 680-712 350-382 (498)
307 KOG1853 LIS1-interacting prote 41.2 5.3E+02 0.012 28.5 12.9 29 629-657 52-80 (333)
308 PF10883 DUF2681: Protein of u 40.9 96 0.0021 28.6 6.5 37 684-720 29-65 (87)
309 TIGR02971 heterocyst_DevB ABC 40.8 4.7E+02 0.01 27.8 16.8 18 694-711 181-198 (327)
310 TIGR03545 conserved hypothetic 40.6 2E+02 0.0043 34.2 10.7 27 685-711 219-245 (555)
311 PF10158 LOH1CR12: Tumour supp 40.6 2.4E+02 0.0052 27.6 9.6 60 660-719 37-97 (131)
312 TIGR00414 serS seryl-tRNA synt 40.6 2.3E+02 0.0051 32.2 10.9 45 589-634 4-49 (418)
313 KOG3156 Uncharacterized membra 40.1 1.4E+02 0.0031 31.7 8.4 24 639-662 177-200 (220)
314 PRK11147 ABC transporter ATPas 40.0 71 0.0015 37.6 7.0 49 676-724 573-627 (635)
315 KOG4807 F-actin binding protei 39.9 6.7E+02 0.015 29.3 14.9 26 552-579 295-320 (593)
316 PF15619 Lebercilin: Ciliary p 39.8 4.5E+02 0.0097 27.2 16.7 19 687-705 173-191 (194)
317 PF05529 Bap31: B-cell recepto 39.8 1.5E+02 0.0033 29.6 8.4 25 573-597 118-142 (192)
318 cd07647 F-BAR_PSTPIP The F-BAR 39.8 4.6E+02 0.0099 27.3 15.4 12 560-571 83-94 (239)
319 TIGR01000 bacteriocin_acc bact 39.6 6.2E+02 0.013 28.8 20.9 29 693-721 285-313 (457)
320 KOG2077 JNK/SAPK-associated pr 39.4 1.2E+02 0.0027 36.4 8.5 67 617-707 313-379 (832)
321 PF07851 TMPIT: TMPIT-like pro 39.4 1.6E+02 0.0036 32.9 9.2 42 596-637 3-47 (330)
322 PF14257 DUF4349: Domain of un 39.2 1E+02 0.0022 32.3 7.3 97 535-645 96-192 (262)
323 PF12252 SidE: Dot/Icm substra 39.1 1E+03 0.022 31.2 17.2 41 648-688 1264-1305(1439)
324 KOG0239 Kinesin (KAR3 subfamil 39.0 8.2E+02 0.018 30.0 17.1 72 638-713 243-314 (670)
325 PF01608 I_LWEQ: I/LWEQ domain 39.0 1.5E+02 0.0033 29.8 8.1 76 612-707 70-147 (152)
326 PF11932 DUF3450: Protein of u 38.8 4.8E+02 0.01 27.3 13.2 22 689-710 81-102 (251)
327 PF15458 NTR2: Nineteen comple 38.8 1.7E+02 0.0037 31.2 9.0 94 613-723 147-253 (254)
328 PF12795 MscS_porin: Mechanose 38.7 4.7E+02 0.01 27.2 14.5 129 587-717 52-182 (240)
329 PF09744 Jnk-SapK_ap_N: JNK_SA 38.6 4.3E+02 0.0093 26.7 12.0 64 583-649 46-109 (158)
330 KOG1962 B-cell receptor-associ 38.4 4.9E+02 0.011 27.8 12.0 27 679-705 180-206 (216)
331 PRK13169 DNA replication intia 38.3 52 0.0011 31.4 4.6 41 615-655 8-48 (110)
332 TIGR01010 BexC_CtrB_KpsE polys 38.1 5.7E+02 0.012 27.9 14.3 20 636-655 214-233 (362)
333 PF05377 FlaC_arch: Flagella a 38.0 62 0.0013 27.6 4.4 34 616-656 1-34 (55)
334 PF04977 DivIC: Septum formati 37.9 96 0.0021 26.1 5.8 44 676-719 15-58 (80)
335 PRK11448 hsdR type I restricti 37.7 1.3E+02 0.0028 38.6 9.1 36 679-714 178-213 (1123)
336 TIGR02449 conserved hypothetic 37.7 2.1E+02 0.0046 25.1 7.8 53 629-709 7-59 (65)
337 KOG0288 WD40 repeat protein Ti 37.4 7.4E+02 0.016 29.1 14.0 21 559-579 21-41 (459)
338 PF12718 Tropomyosin_1: Tropom 37.3 4.1E+02 0.0089 26.1 17.6 65 640-711 77-141 (143)
339 PF13094 CENP-Q: CENP-Q, a CEN 37.1 1.8E+02 0.0038 28.5 8.2 44 680-723 36-79 (160)
340 PF04576 Zein-binding: Zein-bi 37.0 2.5E+02 0.0055 26.4 8.6 22 631-652 72-93 (94)
341 KOG4657 Uncharacterized conser 37.0 5.8E+02 0.013 27.7 15.6 31 623-653 66-96 (246)
342 PF14357 DUF4404: Domain of un 36.9 47 0.001 30.0 3.9 52 586-644 3-65 (85)
343 PF14555 UBA_4: UBA-like domai 36.5 53 0.0011 25.6 3.7 33 215-248 4-36 (43)
344 PF07445 priB_priC: Primosomal 36.4 2.6E+02 0.0056 28.2 9.4 33 632-664 66-98 (173)
345 PF15035 Rootletin: Ciliary ro 36.3 4.9E+02 0.011 26.7 13.7 88 624-714 62-156 (182)
346 KOG4572 Predicted DNA-binding 36.2 1E+03 0.022 30.4 17.3 138 576-724 886-1034(1424)
347 PLN02320 seryl-tRNA synthetase 36.1 2.7E+02 0.0058 33.0 10.6 25 689-713 134-158 (502)
348 PLN02769 Probable galacturonos 35.5 1.2E+02 0.0026 36.6 7.9 75 584-658 205-282 (629)
349 PRK11578 macrolide transporter 35.5 3E+02 0.0065 30.1 10.5 21 618-638 109-129 (370)
350 KOG0962 DNA repair protein RAD 35.5 1.2E+03 0.026 31.0 21.0 17 637-653 879-895 (1294)
351 PF06005 DUF904: Protein of un 35.4 3.2E+02 0.0069 24.2 9.5 29 628-656 10-38 (72)
352 PRK06991 ferredoxin; Provision 35.4 1.4E+02 0.003 32.4 7.7 33 565-602 142-174 (270)
353 PRK07720 fliJ flagellar biosyn 35.1 4.1E+02 0.0089 25.4 11.4 78 621-713 22-99 (146)
354 KOG4438 Centromere-associated 35.0 4.4E+02 0.0095 30.8 11.7 96 545-650 303-398 (446)
355 TIGR00019 prfA peptide chain r 34.5 3.2E+02 0.0068 31.0 10.5 27 549-575 8-34 (360)
356 COG2433 Uncharacterized conser 34.4 4.4E+02 0.0095 32.1 12.0 35 615-649 474-508 (652)
357 PF09738 DUF2051: Double stran 34.4 4.1E+02 0.009 29.4 11.2 85 552-654 81-165 (302)
358 KOG2668 Flotillins [Intracellu 34.0 7.9E+02 0.017 28.4 13.7 47 577-628 198-244 (428)
359 PF03904 DUF334: Domain of unk 33.9 6.3E+02 0.014 27.3 15.3 115 576-710 22-138 (230)
360 PRK15178 Vi polysaccharide exp 33.6 5.5E+02 0.012 30.0 12.4 104 550-658 221-338 (434)
361 KOG1962 B-cell receptor-associ 33.5 3.6E+02 0.0078 28.7 10.1 78 573-653 130-210 (216)
362 PLN02910 polygalacturonate 4-a 33.4 1.5E+02 0.0032 36.0 8.1 81 580-660 216-299 (657)
363 PRK05689 fliJ flagellar biosyn 33.3 4.3E+02 0.0094 25.1 16.1 11 671-681 105-115 (147)
364 PF08397 IMD: IRSp53/MIM homol 32.8 5.7E+02 0.012 26.3 19.7 147 548-712 58-209 (219)
365 PF09728 Taxilin: Myosin-like 32.5 7.1E+02 0.015 27.4 19.3 138 548-691 155-299 (309)
366 PF05700 BCAS2: Breast carcino 32.5 2.7E+02 0.0058 29.0 9.0 63 592-661 152-214 (221)
367 PF01920 Prefoldin_2: Prefoldi 32.3 2.3E+02 0.0049 25.1 7.5 78 578-655 10-95 (106)
368 PRK06231 F0F1 ATP synthase sub 32.3 5.8E+02 0.013 26.3 14.1 6 689-694 179-184 (205)
369 PF14932 HAUS-augmin3: HAUS au 32.2 5.2E+02 0.011 27.5 11.3 101 582-685 70-190 (256)
370 cd04776 HTH_GnyR Helix-Turn-He 31.6 2.2E+02 0.0048 26.7 7.6 41 682-722 77-117 (118)
371 COG3883 Uncharacterized protei 31.6 2.7E+02 0.0058 30.5 9.1 54 668-721 42-95 (265)
372 KOG2129 Uncharacterized conser 31.5 9.3E+02 0.02 28.4 20.7 113 553-665 141-282 (552)
373 KOG0240 Kinesin (SMY1 subfamil 31.4 1E+03 0.022 28.9 15.1 26 644-669 471-496 (607)
374 PRK10865 protein disaggregatio 31.3 5E+02 0.011 32.4 12.5 21 638-658 412-432 (857)
375 PF06632 XRCC4: DNA double-str 31.2 5.3E+02 0.011 29.1 11.5 25 694-718 189-213 (342)
376 KOG0288 WD40 repeat protein Ti 31.0 9.3E+02 0.02 28.3 17.1 35 563-597 10-44 (459)
377 PF10018 Med4: Vitamin-D-recep 31.0 2E+02 0.0044 29.0 7.7 31 598-628 30-63 (188)
378 TIGR00570 cdk7 CDK-activating 30.7 5.8E+02 0.013 28.6 11.6 57 544-601 100-160 (309)
379 PF09304 Cortex-I_coil: Cortex 30.7 5E+02 0.011 25.1 11.7 75 640-722 13-88 (107)
380 PF14197 Cep57_CLD_2: Centroso 30.7 3.7E+02 0.0081 23.6 8.3 42 620-661 3-44 (69)
381 KOG4572 Predicted DNA-binding 30.6 1.3E+03 0.027 29.7 15.8 52 639-706 1055-1106(1424)
382 PRK00578 prfB peptide chain re 30.2 2.2E+02 0.0047 32.3 8.5 52 551-602 26-81 (367)
383 PF10368 YkyA: Putative cell-w 30.1 6.5E+02 0.014 26.2 11.4 36 610-645 74-112 (204)
384 PF03961 DUF342: Protein of un 30.1 3.3E+02 0.0072 31.0 10.0 33 679-711 376-408 (451)
385 PF14817 HAUS5: HAUS augmin-li 29.8 3.9E+02 0.0084 32.5 10.8 45 582-626 292-347 (632)
386 PF08172 CASP_C: CASP C termin 29.8 1.9E+02 0.0041 31.0 7.6 91 617-713 1-121 (248)
387 KOG2264 Exostosin EXT1L [Signa 29.8 3.1E+02 0.0068 33.2 9.7 42 613-654 77-118 (907)
388 PF08614 ATG16: Autophagy prot 29.7 1.3E+02 0.0028 30.4 6.1 74 636-709 67-140 (194)
389 PF10805 DUF2730: Protein of u 29.6 2E+02 0.0043 26.9 6.8 40 613-652 47-88 (106)
390 PF15358 TSKS: Testis-specific 29.6 3.4E+02 0.0073 31.7 9.7 108 539-654 101-232 (558)
391 KOG3467 Histone H4 [Chromatin 29.5 38 0.00082 31.5 2.0 56 126-188 16-72 (103)
392 PF05008 V-SNARE: Vesicle tran 29.3 2.8E+02 0.006 23.7 7.3 26 685-710 54-79 (79)
393 COG5283 Phage-related tail pro 29.2 1.5E+03 0.032 30.0 17.8 38 615-652 99-143 (1213)
394 KOG0971 Microtubule-associated 29.0 1.4E+03 0.03 29.7 23.4 136 540-695 218-356 (1243)
395 PF12777 MT: Microtubule-bindi 28.9 4.3E+02 0.0093 29.1 10.4 15 681-695 294-308 (344)
396 PF02403 Seryl_tRNA_N: Seryl-t 28.9 4.4E+02 0.0096 23.9 9.1 46 589-635 4-49 (108)
397 TIGR03545 conserved hypothetic 28.4 2.8E+02 0.0061 33.0 9.3 90 616-713 172-261 (555)
398 PRK09973 putative outer membra 28.4 1.1E+02 0.0025 28.1 4.9 40 623-662 25-64 (85)
399 cd09236 V_AnPalA_UmRIM20_like 28.4 8.5E+02 0.018 27.0 17.4 104 591-694 100-218 (353)
400 KOG4593 Mitotic checkpoint pro 28.1 1.2E+03 0.027 28.9 20.7 12 591-602 92-103 (716)
401 PRK00591 prfA peptide chain re 28.1 4.3E+02 0.0094 30.0 10.3 30 548-577 6-35 (359)
402 COG4372 Uncharacterized protei 27.9 1E+03 0.022 27.8 17.4 120 586-719 80-199 (499)
403 PF03962 Mnd1: Mnd1 family; I 27.9 4.1E+02 0.0089 27.2 9.3 25 640-664 66-90 (188)
404 PF12037 DUF3523: Domain of un 27.9 8.6E+02 0.019 26.9 13.3 19 682-700 103-121 (276)
405 PLN02678 seryl-tRNA synthetase 27.8 4.3E+02 0.0094 30.7 10.5 50 589-639 4-57 (448)
406 PF05008 V-SNARE: Vesicle tran 27.4 2.5E+02 0.0053 24.1 6.6 11 617-627 41-51 (79)
407 PF06160 EzrA: Septation ring 27.3 1.1E+03 0.024 27.9 20.9 87 613-699 311-407 (560)
408 KOG0982 Centrosomal protein Nu 27.1 1.1E+03 0.024 27.9 19.2 32 550-581 252-283 (502)
409 PF06248 Zw10: Centromere/kine 26.9 6.9E+02 0.015 29.5 12.1 22 683-704 159-180 (593)
410 PF05384 DegS: Sensor protein 26.9 6.8E+02 0.015 25.4 17.0 112 609-720 21-133 (159)
411 TIGR03794 NHPM_micro_HlyD NHPM 26.6 9.3E+02 0.02 26.9 18.6 22 701-722 229-250 (421)
412 PF02994 Transposase_22: L1 tr 26.4 1.9E+02 0.0041 32.5 7.2 46 678-723 144-189 (370)
413 PF03474 DMA: DMRTA motif; In 26.4 1.2E+02 0.0025 24.4 3.9 33 215-247 5-37 (39)
414 TIGR00634 recN DNA repair prot 26.4 1.1E+03 0.024 27.7 19.8 58 552-610 165-222 (563)
415 PRK11032 hypothetical protein; 26.4 4.7E+02 0.01 26.6 9.2 55 547-602 9-65 (160)
416 PF02601 Exonuc_VII_L: Exonucl 26.3 8.3E+02 0.018 26.2 16.1 10 524-533 122-132 (319)
417 KOG2129 Uncharacterized conser 26.3 1.1E+03 0.025 27.8 13.8 74 545-623 96-173 (552)
418 PRK05431 seryl-tRNA synthetase 26.3 4.4E+02 0.0096 30.1 10.1 46 589-636 4-49 (425)
419 PRK10865 protein disaggregatio 26.2 4.8E+02 0.01 32.6 11.1 15 539-553 336-350 (857)
420 PF14193 DUF4315: Domain of un 26.2 1.4E+02 0.0031 27.2 5.1 31 689-719 5-35 (83)
421 PF12795 MscS_porin: Mechanose 26.1 7.6E+02 0.016 25.7 11.8 60 665-724 79-138 (240)
422 TIGR01554 major_cap_HK97 phage 26.0 2E+02 0.0044 31.6 7.3 19 551-569 2-20 (378)
423 PTZ00121 MAEBL; Provisional 26.0 1.9E+03 0.04 30.2 23.2 10 524-533 1073-1082(2084)
424 PF06476 DUF1090: Protein of u 25.9 4.2E+02 0.0091 25.4 8.4 67 642-714 23-92 (115)
425 PF07889 DUF1664: Protein of u 25.8 4.3E+02 0.0093 25.9 8.5 83 567-649 25-123 (126)
426 TIGR01730 RND_mfp RND family e 25.7 1.6E+02 0.0035 30.5 6.1 16 586-601 77-92 (322)
427 PF13851 GAS: Growth-arrest sp 25.7 7.6E+02 0.016 25.5 21.0 101 551-653 26-131 (201)
428 KOG3915 Transcription regulato 25.7 5.5E+02 0.012 30.5 10.6 50 675-724 545-595 (641)
429 KOG4348 Adaptor protein CMS/SE 25.6 4.1E+02 0.0089 31.3 9.5 58 539-622 560-617 (627)
430 KOG0681 Actin-related protein 25.6 5.6E+02 0.012 31.1 10.8 41 666-706 386-426 (645)
431 TIGR01730 RND_mfp RND family e 25.5 3.7E+02 0.0081 27.9 8.8 6 539-544 46-51 (322)
432 PF14662 CCDC155: Coiled-coil 25.5 8.2E+02 0.018 25.8 12.4 36 627-663 27-62 (193)
433 PRK06342 transcription elongat 25.5 93 0.002 31.1 4.2 38 688-725 37-76 (160)
434 KOG4715 SWI/SNF-related matrix 25.0 3.9E+02 0.0084 30.3 8.9 68 630-697 229-305 (410)
435 PF01517 HDV_ag: Hepatitis del 24.9 1.2E+02 0.0027 31.1 4.8 45 587-647 4-50 (194)
436 TIGR00020 prfB peptide chain r 24.9 3.8E+02 0.0083 30.4 9.2 26 552-577 27-52 (364)
437 PF13747 DUF4164: Domain of un 24.5 5.5E+02 0.012 23.5 10.0 51 632-682 35-85 (89)
438 PF09789 DUF2353: Uncharacteri 24.4 9.3E+02 0.02 27.1 11.8 72 637-708 10-102 (319)
439 KOG1760 Molecular chaperone Pr 24.2 4.7E+02 0.01 25.9 8.4 32 581-612 31-62 (131)
440 PF09763 Sec3_C: Exocyst compl 24.0 5.4E+02 0.012 31.0 10.8 57 599-655 7-63 (701)
441 PF11363 DUF3164: Protein of u 23.8 1.1E+02 0.0025 31.5 4.5 119 536-656 5-162 (195)
442 PF05266 DUF724: Protein of un 23.8 8.2E+02 0.018 25.3 11.7 19 638-656 140-158 (190)
443 PF02403 Seryl_tRNA_N: Seryl-t 23.8 5.5E+02 0.012 23.2 9.2 18 690-707 72-89 (108)
444 TIGR00999 8a0102 Membrane Fusi 23.7 2.9E+02 0.0063 28.1 7.4 42 677-718 39-80 (265)
445 PF12761 End3: Actin cytoskele 23.7 6.3E+02 0.014 26.6 9.8 28 679-706 168-195 (195)
446 COG2882 FliJ Flagellar biosynt 23.6 7.7E+02 0.017 24.8 11.9 90 608-712 9-98 (148)
447 PRK05431 seryl-tRNA synthetase 23.1 5.1E+02 0.011 29.6 9.9 22 690-711 71-92 (425)
448 PF05769 DUF837: Protein of un 23.0 8.3E+02 0.018 25.1 16.6 25 629-653 63-87 (181)
449 PF13815 Dzip-like_N: Iguana/D 23.0 4E+02 0.0086 25.1 7.6 50 659-708 67-117 (118)
450 PF11819 DUF3338: Domain of un 22.9 1.1E+02 0.0025 30.3 4.1 43 530-588 92-134 (138)
451 KOG3478 Prefoldin subunit 6, K 22.8 7.3E+02 0.016 24.3 12.3 40 670-709 75-114 (120)
452 PF13334 DUF4094: Domain of un 22.7 97 0.0021 28.7 3.4 31 626-656 63-93 (95)
453 PF06810 Phage_GP20: Phage min 22.3 5.4E+02 0.012 25.6 8.8 41 616-656 21-64 (155)
454 PF09607 BrkDBD: Brinker DNA-b 22.1 70 0.0015 27.6 2.2 40 656-695 11-57 (58)
455 cd07674 F-BAR_FCHO1 The F-BAR 21.8 9.7E+02 0.021 25.4 15.3 20 578-597 16-35 (261)
456 PF09288 UBA_3: Fungal ubiquit 21.8 1.2E+02 0.0025 26.1 3.4 45 137-183 5-49 (55)
457 PF11079 YqhG: Bacterial prote 21.6 1.7E+02 0.0036 31.9 5.4 40 568-611 201-241 (260)
458 PRK09578 periplasmic multidrug 21.6 4.5E+02 0.0097 29.0 8.8 28 691-718 138-165 (385)
459 PF07851 TMPIT: TMPIT-like pro 21.5 1.1E+03 0.024 26.7 11.7 79 637-721 12-90 (330)
460 PF08826 DMPK_coil: DMPK coile 21.5 2.7E+02 0.0059 24.1 5.6 38 619-656 22-59 (61)
461 PF11570 E2R135: Coiled-coil r 21.5 8.3E+02 0.018 24.5 11.3 95 615-720 29-133 (136)
462 PF14523 Syntaxin_2: Syntaxin- 21.3 5.8E+02 0.013 22.6 9.8 58 644-708 27-94 (102)
463 TIGR02473 flagell_FliJ flagell 21.3 6.6E+02 0.014 23.2 14.8 30 623-652 21-50 (141)
464 TIGR00219 mreC rod shape-deter 21.3 1.6E+02 0.0035 31.8 5.3 14 639-652 69-82 (283)
465 KOG3915 Transcription regulato 21.3 3.5E+02 0.0076 32.0 8.0 31 679-709 564-594 (641)
466 COG4238 Murein lipoprotein [Ce 21.2 2.6E+02 0.0057 25.5 5.6 41 624-664 27-67 (78)
467 KOG4797 Transcriptional regula 21.1 1.4E+02 0.0029 29.0 4.1 17 539-555 42-58 (123)
468 PRK14474 F0F1 ATP synthase sub 21.1 9.4E+02 0.02 25.6 10.8 72 649-724 37-108 (250)
469 PF06637 PV-1: PV-1 protein (P 21.0 1.4E+03 0.029 26.8 12.6 29 681-709 352-380 (442)
470 PF07106 TBPIP: Tat binding pr 21.0 4.3E+02 0.0094 26.0 7.8 16 550-565 74-89 (169)
471 PRK05689 fliJ flagellar biosyn 20.9 7.3E+02 0.016 23.6 11.9 35 679-713 65-99 (147)
472 PRK12705 hypothetical protein; 20.8 1.5E+03 0.032 27.1 21.8 30 616-645 85-114 (508)
473 PF06102 DUF947: Domain of unk 20.8 3.9E+02 0.0085 27.0 7.5 61 594-656 60-120 (168)
474 PF08912 Rho_Binding: Rho Bind 20.8 3.3E+02 0.0072 24.3 6.1 49 559-615 4-54 (69)
475 TIGR01541 tape_meas_lam_C phag 20.7 1.2E+03 0.026 26.1 14.7 30 589-618 23-52 (332)
476 PF05837 CENP-H: Centromere pr 20.6 7E+02 0.015 23.3 10.9 74 631-705 5-78 (106)
477 KOG3102 Uncharacterized conser 20.5 2.6E+02 0.0057 30.1 6.4 30 528-557 70-105 (269)
478 PF02841 GBP_C: Guanylate-bind 20.3 1.1E+03 0.024 25.4 15.3 97 613-709 195-294 (297)
479 PF07083 DUF1351: Protein of u 20.3 9.9E+02 0.021 24.9 14.7 124 585-721 47-177 (215)
480 PF00627 UBA: UBA/TS-N domain; 20.1 2.1E+02 0.0046 21.5 4.3 31 214-246 5-35 (37)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.13 E-value=0.11 Score=62.61 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=6.4
Q ss_pred HHhHHHHHHHHHHHHHH
Q 004861 680 FQSWEKQKALFQEELVT 696 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa~ 696 (726)
+..++.+...+++++..
T Consensus 345 ~~~~~~~~~~~~~~l~~ 361 (1164)
T TIGR02169 345 IEEERKRRDKLTEEYAE 361 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 2
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.02 E-value=0.31 Score=58.81 Aligned_cols=166 Identities=22% Similarity=0.205 Sum_probs=118.4
Q ss_pred cCcccCcCcccccCCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhh
Q 004861 528 AGILSDDTSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQ 607 (726)
Q Consensus 528 ~~i~~D~~~~~~~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq 607 (726)
.-+|.+ .++ +|.+|..|.-|.+.+..|..++---+.=|+-.+-|...+|.-..-+|.--|.+.+++
T Consensus 319 ~~~~~~-~sq-----kd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~-------- 384 (980)
T KOG0980|consen 319 ASDPPN-ASQ-----KDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQEN-------- 384 (980)
T ss_pred ccCCcc-ccc-----CChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------
Confidence 334555 555 299999999999999999999988888888888888888766655555444443332
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHH
Q 004861 608 ILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK 687 (726)
Q Consensus 608 ~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK 687 (726)
..|.. +|-+-+--|....+|+++|+..|...|.++......-+.-|--=++=..-.+++++|=....|++.+=+.-.
T Consensus 385 ~~e~e---qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~ 461 (980)
T KOG0980|consen 385 REEQE---QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSI 461 (980)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11222 677777777788888888888888888888877777777777777777777777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004861 688 ALFQEELVTEKRKVVQLLQELDQ 710 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~~l~qel~q 710 (726)
....+++..--.+|.+++.+..+
T Consensus 462 ~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 462 DDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 3
>PRK09039 hypothetical protein; Validated
Probab=96.60 E-value=0.18 Score=55.03 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhH---HHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhh
Q 004861 556 RVRELHNQLHEWT---EWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVE 632 (726)
Q Consensus 556 rv~eLq~qlqewt---dWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Qle 632 (726)
.+.+|+.|+-+=. .--+++--+.-.+|..-.++|..++.++++++..-.++......-.-|+.+++.+|........
T Consensus 54 eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s 133 (343)
T PRK09039 54 ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA 133 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544422 1223344445555666666666777777777666554433222445678888899999999999
Q ss_pred hhhhhHHHHHhhhHHHHHH
Q 004861 633 RANSAVRRLEVENTALRQE 651 (726)
Q Consensus 633 rAns~vrrLE~EnA~lR~E 651 (726)
.++..|.+|..+++.||++
T Consensus 134 e~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999988
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.14 Score=60.99 Aligned_cols=112 Identities=29% Similarity=0.216 Sum_probs=74.1
Q ss_pred HHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHH
Q 004861 593 RQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKR 672 (726)
Q Consensus 593 R~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~kr 672 (726)
++||||.+|-.+|+|.-| +|+-.|+|..|.+ -.-.-|..|.|.--=+.+|||||-. .|--++
T Consensus 349 qkEreE~ekkererqEqE---rk~qlElekqLer-------QReiE~qrEEerkkeie~rEaar~E--------lEkqRq 410 (1118)
T KOG1029|consen 349 QKEREEEEKKERERQEQE---RKAQLELEKQLER-------QREIERQREEERKKEIERREAAREE--------LEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 678888887777776544 7888888876654 2222222232222223345555421 222233
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 673 EKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 673 ekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
-.-..-|.|-+-.||..=||+|--++.|.++|++||+-.+...+|++.|.
T Consensus 411 lewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl 460 (1118)
T KOG1029|consen 411 LEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKL 460 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33334456667778999999999999999999999999999888888775
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=96.30 E-value=0.91 Score=54.34 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhHH
Q 004861 548 EIILKLIPRVRELHNQLHEWTE 569 (726)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtd 569 (726)
+.|-++-.++.+|+.++.+|+.
T Consensus 475 ~~~~~~~~~~~~le~~l~~~~~ 496 (880)
T PRK02224 475 ERVEELEAELEDLEEEVEEVEE 496 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666678888888887776
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=96.16 E-value=1 Score=53.70 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
..+|..++..|.....+++..+..+..|+.++++|+.+++..+
T Consensus 611 ~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~ 653 (880)
T PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555566666666666666666666666666553
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.13 E-value=1 Score=56.29 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (726)
+.+.+..+.....+++.-.....+|+.+++.++.++.-++..-.+......++-.+.......+..-+.++..+.++|..
T Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~ 881 (1163)
T COG1196 802 LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444445555555555555555554444444444444444455555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004861 697 EKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 697 eK~Kl~~l~qel~qak~~q~q~ 718 (726)
-+.+...+.+++..+.....++
T Consensus 882 ~~~~~~~l~~~l~~~~~~~~~~ 903 (1163)
T COG1196 882 LEEEKEELEEELRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444443333
No 8
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.06 E-value=0.61 Score=48.19 Aligned_cols=131 Identities=26% Similarity=0.373 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 574 KVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 574 KvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
+.+...-||..--..|+..+..-+++++. =+.+..||..+|..|.++-..++.+.+.+..||.+...+...|.
T Consensus 86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k-------~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 86 REQSDEERIEELEQQLKEAKRRAEEAERK-------YEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHH-------HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 44455555555555556555555555544 44566677777777777777777777777777776666554443
Q ss_pred H---HHHhHHHhHH-----------HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 654 A---AKLRAAESAA-----------SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 654 A---aKL~A~ES~~-----------sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
. +--.+++-.. .+.++-.|-...-.+...-+++...|.++|..+|.|...++.+|.++
T Consensus 159 ~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 159 SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222111 12222223333334566678888889999999999999999999875
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.03 E-value=1.5 Score=51.19 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 681 qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
-.|..+|.-||......|.+|.+|+.++.++++
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~ 385 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE 385 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999987665
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=95.94 E-value=2.1 Score=51.16 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHH----hhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 582 LSKDKAELKTLRQEKEEVERLKKE----KQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKe----Kq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
+..-..+++.|+++.++++...+. .+.| +...+++.++++.+.....++......+.+++.+..++..+.+
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l-~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~ 276 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKLEKEVKEL-EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555432221 1222 2355566666666666666666666666666666655555443
No 11
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.84 E-value=2.3 Score=50.04 Aligned_cols=183 Identities=21% Similarity=0.199 Sum_probs=108.4
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhHH----HHHHHHH-HHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhH
Q 004861 543 QDKRDEIILKLIPRVRELHNQLHEWTE----WANQKVM-QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKL 617 (726)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqewtd----WAnqKvm-QaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrL 617 (726)
.-.++.=|..|.+++++++.++.+..+ --.++.- +-+.|...-+.+...+-...++++.-=..-|..=+.|.+.|
T Consensus 140 ~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el 219 (629)
T KOG0963|consen 140 LKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNEL 219 (629)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 345567788888888888887776655 1111110 11112222222222222222222111112222233455666
Q ss_pred HHHHHH-----------HHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHH-----hHHHHHHHHHHHHHhHHHHH
Q 004861 618 SEMENA-----------LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE-----SAASCQEVSKREKKTQMKFQ 681 (726)
Q Consensus 618 sEmEnA-----------L~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~E-----S~~sc~ev~krekk~lkk~q 681 (726)
.+.++. +.=.-..|++||..++-||.|+..||-+..-++=+..- ..+.-+-+-.+|..-..=.-
T Consensus 220 ~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~ 299 (629)
T KOG0963|consen 220 FDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSN 299 (629)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHH
Confidence 666665 22234578999999999999999999998766533221 12222222225555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 004861 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 682 sWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q~ 725 (726)
..+.-++-|++|+.+.+.-|..|.+++.......++++-+...+
T Consensus 300 di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 300 DIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67777888999999999999999999999888888887665443
No 12
>PRK11637 AmiB activator; Provisional
Probab=95.76 E-value=1.7 Score=48.44 Aligned_cols=9 Identities=0% Similarity=0.541 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 004861 556 RVRELHNQL 564 (726)
Q Consensus 556 rv~eLq~ql 564 (726)
++++++.++
T Consensus 48 ~l~~l~~qi 56 (428)
T PRK11637 48 QLKSIQQDI 56 (428)
T ss_pred HHHHHHHHH
Confidence 333333333
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=95.67 E-value=1.6 Score=52.31 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=10.3
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 004861 548 EIILKLIPRVRELHNQLHE 566 (726)
Q Consensus 548 EmilkLv~rv~eLq~qlqe 566 (726)
+++-++...++++..++.+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (880)
T PRK02224 468 ETIEEDRERVEELEAELED 486 (880)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5555566666665544443
No 14
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.67 E-value=0.73 Score=43.80 Aligned_cols=64 Identities=34% Similarity=0.487 Sum_probs=46.6
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
....+..+++.++.+.++|+-.-.+ .-.+|+.||..|+.||..-+.++..|. .|-+-+.+
T Consensus 67 e~~~~~~~~~~l~~~~~~a~~~l~~-----------------~e~sw~~qk~~le~e~~~~~~r~~dL~---~QN~lLh~ 126 (132)
T PF07926_consen 67 ELQELQQEINELKAEAESAKAELEE-----------------SEASWEEQKEQLEKELSELEQRIEDLN---EQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3444555566666666665544432 234799999999999999999999998 57777888
Q ss_pred HHHh
Q 004861 717 QLEV 720 (726)
Q Consensus 717 q~E~ 720 (726)
|||.
T Consensus 127 QlE~ 130 (132)
T PF07926_consen 127 QLES 130 (132)
T ss_pred HHhh
Confidence 8874
No 15
>PRK11637 AmiB activator; Provisional
Probab=95.40 E-value=1.9 Score=47.96 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
.++|.+.+..|..+..+++..+..+..++.++...+.++.
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.26 E-value=4 Score=51.24 Aligned_cols=107 Identities=20% Similarity=0.304 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHH-------HHhHHHHHhHHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKRE-------KKTQMKFQSWEKQK 687 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~kre-------kk~lkk~qsWEkQK 687 (726)
.++..++..+.....++++....+.+++.++..+..++.+-+..-.+-...-.++...- ...-..+..-+.++
T Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~ 886 (1163)
T COG1196 807 RRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999988888888888888888888888888877776666654443333333322 23333444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 688 ALFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
..|+.+|..-.+++.++.++.+++.....+++++
T Consensus 887 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 920 (1163)
T COG1196 887 EELEEELRELESELAELKEEIEKLRERLEELEAK 920 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666665555554443
No 17
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.13 E-value=2.4 Score=43.62 Aligned_cols=127 Identities=25% Similarity=0.317 Sum_probs=54.4
Q ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHH
Q 004861 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAA 660 (726)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ 660 (726)
||...+.+|..++.++++.++- -...||...-. -...+.....++++....+..|..++..++++++..+-+..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~--i~~~l~~~~~~----~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRR--IEEILESDSNG----QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777766655332 11122200000 11222233333333444444444444444444444433333
Q ss_pred HhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 661 ESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 661 ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
+--......-..-.......+.-.++...+++++..-++++..+++.+...+.
T Consensus 95 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 95 ELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111111111111233344445555666666666666666666655443
No 18
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=94.95 E-value=6 Score=41.91 Aligned_cols=143 Identities=22% Similarity=0.259 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhhhhHH----HHHHHHHhHHHHHHHHHHh------hhhhhhhhhhHHHHHHHHHHhhh-hhhhh------
Q 004861 572 NQKVMQAARRLSKDKA----ELKTLRQEKEEVERLKKEK------QILEENTMKKLSEMENALCKASG-QVERA------ 634 (726)
Q Consensus 572 nqKvmQaarRL~kdk~----ELksLR~EkEE~erlkKeK------q~lEe~T~KrLsEmEnAL~kas~-QlerA------ 634 (726)
.+|+-+.+.+||+=.. =...++..++=-.+..+-. ..+-+-.+..+.-.|.-|..-++ ++|-+
T Consensus 45 ~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn 124 (239)
T PF05276_consen 45 TKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLN 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHH
Confidence 3567778888886432 1222333333222222222 22334466777778888877663 56543
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHH--hHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 635 NSAVRRLEVENTALRQEMEAAKL--RAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 635 ns~vrrLE~EnA~lR~EmEAaKL--~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
+++.+--|+|+...+.|.+-.+. ...+....++.+-|+-+++++|..-|=..|+.+++.|...|.||..|++.+.++|
T Consensus 125 ~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK 204 (239)
T PF05276_consen 125 HATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAK 204 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777776654 3455667788888999999999999999999999999999999999999999998
Q ss_pred HH
Q 004861 713 AL 714 (726)
Q Consensus 713 ~~ 714 (726)
..
T Consensus 205 ~~ 206 (239)
T PF05276_consen 205 SR 206 (239)
T ss_pred HH
Confidence 64
No 19
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.63 E-value=6.5 Score=45.43 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=33.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
.++-.-.+-.-...|...-+..+..+.+++++++...+.+|.||..
T Consensus 373 ~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 373 ALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555556677777888888888888888888888888753
No 20
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.53 E-value=6.8 Score=40.60 Aligned_cols=135 Identities=23% Similarity=0.264 Sum_probs=73.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHH
Q 004861 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (726)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (726)
..-|..+.+..++.+|.-|....-....-.||..+|..|..|....+-|..-.-..+-....+..+.+.+.-++.....-
T Consensus 63 ~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k 142 (237)
T PF00261_consen 63 TEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK 142 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 44555666666666666554444444445566666666666666666555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 666 CQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 666 c~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
|.++=..=+..-.+++++|-.-....+-...-..+|..|.+.|..+....+.+|.
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~ 197 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAER 197 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554444444444445555555555555554444443
No 21
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.45 E-value=3.8 Score=50.93 Aligned_cols=148 Identities=18% Similarity=0.259 Sum_probs=68.8
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHH-HHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Q 004861 563 QLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVE-RLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRL 641 (726)
Q Consensus 563 qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~e-rlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrL 641 (726)
.+++-++|...|+=-+..+|..=.+.+..++-|-+.-. +++.-++.| +.-+.+..+.+-.++.+..++++....+.+|
T Consensus 299 ~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~-~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l 377 (1074)
T KOG0250|consen 299 TLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDL-DDLRREVNDLKEEIREIENSIRKLKKEVDRL 377 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666555555555554433211 111111111 1123334455555555556666666666666
Q ss_pred HhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 642 EVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM-KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 642 E~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lk-k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
|-.++.++++- -.+..+=++=...+-+.|+ .....|.|-.-|.+|+-..++++...++++.+++.-..++
T Consensus 378 ~k~I~~~~~~~-------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l 448 (1074)
T KOG0250|consen 378 EKQIADLEKQT-------NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQL 448 (1074)
T ss_pred HHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66655555544 1222221111111112221 2233344555666666666666666666665554433333
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.36 E-value=8.6 Score=43.58 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 004861 547 DEIILKL 553 (726)
Q Consensus 547 DEmilkL 553 (726)
-+++-+|
T Consensus 153 ~~il~~l 159 (562)
T PHA02562 153 RKLVEDL 159 (562)
T ss_pred HHHHHHH
Confidence 3444443
No 23
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.34 E-value=5.4 Score=42.97 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhHH
Q 004861 574 KVMQAARRLSKDKAELKTLRQEKE 597 (726)
Q Consensus 574 KvmQaarRL~kdk~ELksLR~EkE 597 (726)
.+.+....+..-...++.++.+..
T Consensus 152 ~i~~~~~~i~~~~~~l~~~~~~l~ 175 (423)
T TIGR01843 152 QIKQLEAELAGLQAQLQALRQQLE 175 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444433
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.32 E-value=6.2 Score=52.14 Aligned_cols=183 Identities=23% Similarity=0.264 Sum_probs=104.3
Q ss_pred ccccCCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhhhHHHHHHHHHhH-HHHHHHHHHhhhh
Q 004861 537 LEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQ------KVMQAARRLSKDKAELKTLRQEK-EEVERLKKEKQIL 609 (726)
Q Consensus 537 ~~~~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnq------KvmQaarRL~kdk~ELksLR~Ek-EE~erlkKeKq~l 609 (726)
+.+.++--+++|.+.+.=+.++.|+.+++.=..=+++ ++.+.-.-|..++.-=+.+..+. |.-++++++|+.+
T Consensus 827 vkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~l 906 (1930)
T KOG0161|consen 827 VKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQEL 906 (1930)
T ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999988888754443333 33333222222221111111111 2233445555555
Q ss_pred hhh---hhhhH-------HHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhH---HHhHHHHHHHHHHHHHh
Q 004861 610 EEN---TMKKL-------SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRA---AESAASCQEVSKREKKT 676 (726)
Q Consensus 610 Ee~---T~KrL-------sEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A---~ES~~sc~ev~krekk~ 676 (726)
|.. +..++ .++|...+++-..+.--...++.+|.....+..|..++.-+- -+-...|.|..-+..+.
T Consensus 907 e~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke 986 (1930)
T KOG0161|consen 907 EKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 33333 333444555555555555566666666666666665543222 22233355544433332
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 677 lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
-...|..-..|+++|..++.|+.+|-+...+.++..+.+|.+.
T Consensus 987 ---kk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~l 1029 (1930)
T KOG0161|consen 987 ---KKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTL 1029 (1930)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2225667778888999999999888888888888887777654
No 25
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.29 E-value=8 Score=46.54 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQE 651 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~E 651 (726)
+.|.-+||+.|++...+|-.....++.||.|+.++|..
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888888888888888888888777764
No 26
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.21 E-value=2.6 Score=53.40 Aligned_cols=21 Identities=24% Similarity=0.204 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhh
Q 004861 616 KLSEMENALCKASGQVERANS 636 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns 636 (726)
.|.+++..|.+....++.+++
T Consensus 766 ~le~~~~~l~~~~~~~~~~es 786 (1311)
T TIGR00606 766 DIEEQETLLGTIMPEEESAKV 786 (1311)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 366666666666666655543
No 27
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=7 Score=48.53 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=82.8
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhH--HHHHHHHHHhhhhhhhhh-------------hh
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEK--EEVERLKKEKQILEENTM-------------KK 616 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~Ek--EE~erlkKeKq~lEe~T~-------------Kr 616 (726)
.+...+.|++.|+++ ++-+..++++....|.++..+-+.=|.-+ |-.-.+|.-||.+|+++. --
T Consensus 745 ~~~e~v~e~~~~Ike-~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE 823 (1174)
T KOG0933|consen 745 ELLEEVEESEQQIKE-KERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLE 823 (1174)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665 55677777777766666665544433211 111122333333444321 12
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (726)
..||+.++.+.-+|++.-+.....|+.|+..+++...++...-.++-+..-+..++-.-+=+.+-.-....-+++.|++.
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhc
Confidence 46777888888888888888888888888887777666655544444433333333322222222222222233344444
Q ss_pred HHHHHHHHHHHHHH
Q 004861 697 EKRKVVQLLQELDQ 710 (726)
Q Consensus 697 eK~Kl~~l~qel~q 710 (726)
-+-++..|..++..
T Consensus 904 ~~l~~kkle~e~~~ 917 (1174)
T KOG0933|consen 904 GELERKKLEHEVTK 917 (1174)
T ss_pred ccchHHHHHhHHHH
Confidence 44444444444443
No 28
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.96 E-value=2.8 Score=40.89 Aligned_cols=116 Identities=19% Similarity=0.272 Sum_probs=67.4
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHH
Q 004861 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~e 668 (726)
|.+||.|++.+... =+.-..++-++|......-.+|..-+.-+..||.+...+...+..+|-.+.++...-.
T Consensus 2 m~~lk~E~d~a~~r-------~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~- 73 (143)
T PF12718_consen 2 MQALKLEADNAQDR-------AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS- 73 (143)
T ss_pred hHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Confidence 56788888876543 2222333444444444444444444555566666666666666666665555544222
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 669 v~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
...+..+-..+|.+||..--.+|....+.|.++...-.++|-+-
T Consensus 74 ----------~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv 117 (143)
T PF12718_consen 74 ----------NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKV 117 (143)
T ss_pred ----------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 12245555667777777777777777777777766666666443
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.90 E-value=1.7 Score=47.13 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
+..-+.|...++++|.+-+.++.+++.++++++...+
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666666666655554444
No 30
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.85 E-value=9.8 Score=48.12 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=26.8
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHhhhhHHHHHHHHHhHHHHH
Q 004861 545 KRDEIILKLIPRVRELHNQLHEWTE-----------WANQKVMQAARRLSKDKAELKTLRQEKEEVE 600 (726)
Q Consensus 545 ~KDEmilkLv~rv~eLq~qlqewtd-----------WAnqKvmQaarRL~kdk~ELksLR~EkEE~e 600 (726)
++++|+-.|...+..|..+.++-.+ =+++|+-+...++-+-.++++.|+.|.|.++
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666555554444433332 1223333333344444445555555555553
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.72 E-value=7 Score=48.52 Aligned_cols=161 Identities=17% Similarity=0.286 Sum_probs=84.7
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHH-HHHhhhhh
Q 004861 546 RDEIILKLIPRVRELHNQLHEWTEW--------------ANQKVMQAARRLSKDKAELKTLRQEKEEVERL-KKEKQILE 610 (726)
Q Consensus 546 KDEmilkLv~rv~eLq~qlqewtdW--------------AnqKvmQaarRL~kdk~ELksLR~EkEE~erl-kKeKq~lE 610 (726)
+++.+.+--..+..|++-+++|.-- +-+++-+.++++-+-..|...|-.|.|+.++- +.-|+.|+
T Consensus 760 ~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~ 839 (1174)
T KOG0933|consen 760 KERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLE 839 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566667777666533 33444555555555555555566665554432 12233332
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q 004861 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALF 690 (726)
Q Consensus 611 e~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lL 690 (726)
+-.+.++.++..+.+.-+-|+.+...|-++..+...+.+-|-.---.....+++|.-........--..+--|.+-.++
T Consensus 840 -~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~ 918 (1174)
T KOG0933|consen 840 -QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKL 918 (1174)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHh
Confidence 2344555666666666666666666666666666665555444433344445555444444333333444455555666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004861 691 QEELVTEKRKVVQLLQE 707 (726)
Q Consensus 691 QEELa~eK~Kl~~l~qe 707 (726)
+.|-+..+-++..|.++
T Consensus 919 ~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 919 ESEKANARKEVEKLLKK 935 (1174)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 66666666666555443
No 32
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.65 E-value=3.6 Score=53.14 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=108.7
Q ss_pred HHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 577 QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 577 QaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
+|...|++.-.---.|+++.+.+++- ++..++++.+.+..+.+++..+..+.+..+.++-+..+.+.+|..-=
T Consensus 975 ~~~~~l~~~~~~~~~Le~~Le~iE~~-------~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863 975 DAAEMLAKNSDLNEKLRQRLEQAEQE-------RTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG 1047 (1486)
T ss_pred HHHhHhhcchhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555554455666666666555 77788999999999999999999999999999999999999998766
Q ss_pred HhHHHhHHHHHHHHH-----HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 657 LRAAESAASCQEVSK-----REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 657 L~A~ES~~sc~ev~k-----rekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
+.+-+.+.-...+-+ +=..+--|--..|+|....+.||...+.+|..+..++....+...++-++|-
T Consensus 1048 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~ 1119 (1486)
T PRK04863 1048 VPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWC 1119 (1486)
T ss_pred CCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555554444332 2223445566789999999999999999999999999999999999999995
No 33
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.64 E-value=11 Score=46.32 Aligned_cols=152 Identities=23% Similarity=0.284 Sum_probs=103.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhh--h--h---hhhhhhHHH
Q 004861 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQI--L--E---ENTMKKLSE 619 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~--l--E---e~T~KrLsE 619 (726)
.++|.-+-.|+.+|+-++++=.- ..|+.|--..+|-.+++.|..-|.+-|.++.+-+|+.. + | +.-.+++++
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~-~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~ 435 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQR-EAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTE 435 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888877544 34455555668999998888888888888755332211 1 1 112233444
Q ss_pred HHH-------HHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004861 620 MEN-------ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (726)
Q Consensus 620 mEn-------AL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQE 692 (726)
++- -..-...|++-+.-+.-.++.+|.+|-...|..+..+.+-.+ |-....+.+.+.+.|+++|+.
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~-------K~e~~~~~le~l~~El~~l~~ 508 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAET-------KTESQAKALESLRQELALLLI 508 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHH
Confidence 331 122345677888888888888899988888888877665444 333445678888999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004861 693 ELVTEKRKVVQLLQ 706 (726)
Q Consensus 693 ELa~eK~Kl~~l~q 706 (726)
|++..+.++..+.|
T Consensus 509 e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 509 ELEELQRTLSNLAQ 522 (980)
T ss_pred HHHHHHHHhhhHHH
Confidence 99988888766544
No 34
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.47 E-value=9.2 Score=49.63 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH
Q 004861 573 QKVMQAARRLSKDKAELKTLRQEKEEVERLKK 604 (726)
Q Consensus 573 qKvmQaarRL~kdk~ELksLR~EkEE~erlkK 604 (726)
+++-+....|..-...|+.|+++++++++.+.
T Consensus 307 ~nL~rI~diL~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 307 YRLVEMARELAELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555444
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.30 E-value=6.2 Score=50.15 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 688 ALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
..|+++|..-+..+.++..++..++.
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.18 E-value=17 Score=45.59 Aligned_cols=114 Identities=20% Similarity=0.266 Sum_probs=69.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHH-HH
Q 004861 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK-AL 689 (726)
Q Consensus 611 e~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK-~l 689 (726)
+..+.+|+|.|--+....+.++.-..-+..+-.---.+|.|+.+.|-.--++-.+.+++.++-...-|.+-.-++|- -.
T Consensus 312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~ 391 (1074)
T KOG0250|consen 312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE 391 (1074)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566777777777777666665554444444444455566666665555555555555444444444455555555 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 690 LQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
++.++..-..|+.+|.+|.+....+.+++.....+
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777788888877777776666655443
No 37
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.84 E-value=10 Score=45.05 Aligned_cols=118 Identities=27% Similarity=0.404 Sum_probs=63.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhh-------hh-hhhH-HHHHhhhHHHHHHHHH--
Q 004861 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVE-------RA-NSAV-RRLEVENTALRQEMEA-- 654 (726)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Qle-------rA-ns~v-rrLE~EnA~lR~EmEA-- 654 (726)
-.++.+|+.||+.. +.|+.|+|+-|.+...|+. -| .+.+ ..|..|...|++|.|.
T Consensus 35 seev~~L~eEk~~~--------------~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 35 SEEVRTLKEEKEHD--------------ISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777654 3344444444444444333 11 2222 4678888888888764
Q ss_pred HHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 004861 655 AKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQ-------LLQELDQAKALQEQLE 719 (726)
Q Consensus 655 aKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~-------l~qel~qak~~q~q~E 719 (726)
.+|.|..-.-.....+.++++. ++...|..-..++++..+..+-+.. +.+.+.|-+++++|+.
T Consensus 101 ~qlqaqv~~ne~Ls~L~~EqEe--rL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~ 170 (617)
T PF15070_consen 101 EQLQAQVENNEQLSRLNQEQEE--RLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLA 170 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHH
Confidence 4455543333444444444443 5555566666666665544333332 3345666666666553
No 38
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.53 E-value=6.6 Score=42.30 Aligned_cols=21 Identities=5% Similarity=0.064 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004861 700 KVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 700 Kl~~l~qel~qak~~q~q~E~ 720 (726)
++.++++++.+++...++++.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444443
No 39
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.34 E-value=10 Score=46.25 Aligned_cols=98 Identities=23% Similarity=0.300 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHH--HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004861 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA--SCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (726)
Q Consensus 618 sEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~--sc~ev~krekk~lkk~qsWEkQK~lLQEELa 695 (726)
.++|-.|.++..|++...+.++.+|...++|+.|++.+|=+.+...+ -|+.- .....+.+...++.|+.
T Consensus 606 ~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e---------~~e~le~~~~~~e~E~~ 676 (769)
T PF05911_consen 606 EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKE---------SYESLETRLKDLEAEAE 676 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhhhhHHHHHHH
Confidence 45667788888899999999999999999999999988765544333 33332 23456777778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 696 TEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 696 ~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
.-..||..|..||++-+....+++++.+.
T Consensus 677 ~l~~Ki~~Le~Ele~er~~~~e~~~kc~~ 705 (769)
T PF05911_consen 677 ELQSKISSLEEELEKERALSEELEAKCRE 705 (769)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 99999999999999999999998888764
No 40
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.27 E-value=9.9 Score=44.72 Aligned_cols=93 Identities=18% Similarity=0.314 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEEL 694 (726)
-|--+||++|......+++-..-..+|-.+|.+|++..|-.++++++ +..|..++..|+.||
T Consensus 287 ~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~d------------------ve~mn~Er~~l~r~l 348 (581)
T KOG0995|consen 287 SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGED------------------VERMNLERNKLKREL 348 (581)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------------HHHHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999999999888875 344556666677777
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcC
Q 004861 695 VTEKRKVVQLLQELD----QAKALQEQLEVFFFSF 725 (726)
Q Consensus 695 a~eK~Kl~~l~qel~----qak~~q~q~E~~w~q~ 725 (726)
..-..++..|++++= +|...-+++|.+..+|
T Consensus 349 ~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~ 383 (581)
T KOG0995|consen 349 NKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDL 383 (581)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 766666666666543 2333444555444443
No 41
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.25 E-value=15 Score=42.82 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=83.7
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhh----------HHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHh
Q 004861 613 TMKKLSEMENALCKASGQVERANSA----------VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~----------vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qs 682 (726)
..+.|.+++........++++-+-. ++.++.+...|..+++...-...+....+-++.++-++..+++..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3455677777777788888888887 899999999999999977777777788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
-+++...+++.|..-+.......+.|.+.+..-..+
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888887766666666666655544433
No 42
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.11 E-value=24 Score=47.06 Aligned_cols=149 Identities=30% Similarity=0.395 Sum_probs=101.1
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH---------------Hhhhhhhhhh
Q 004861 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKK---------------EKQILEENTM 614 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkK---------------eKq~lEe~T~ 614 (726)
.-.|..|+.+|+.|+.+=|- ++.-+--+.++|..| +-.||.+.||.+.-+. .+.-+|+.-.
T Consensus 1296 ~~~~~~qle~~k~qle~e~r-~k~~l~~~l~~l~~e---~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~ 1371 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETR-EKSALENALRQLEHE---LDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVL 1371 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777766543 223333345555555 4555666666554443 2334455555
Q ss_pred hhHHHHHHHHHH-------hhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHH
Q 004861 615 KKLSEMENALCK-------ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK 687 (726)
Q Consensus 615 KrLsEmEnAL~k-------as~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK 687 (726)
-++.|+|-+-++ +..+++.|++.+-.||--...|+.|.+.+-+..-...+.|..+-++-++.=+-+-.|.+..
T Consensus 1372 ~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~ 1451 (1930)
T KOG0161|consen 1372 QRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKL 1451 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777766666 4556666777777777777777889999988888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004861 688 ALFQEELVTEKRKVV 702 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~ 702 (726)
..|+.||.+...-..
T Consensus 1452 e~l~~Eld~aq~e~r 1466 (1930)
T KOG0161|consen 1452 EKLQAELDAAQRELR 1466 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999877654433
No 43
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.85 E-value=8.4 Score=40.60 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~ 650 (726)
-|.||-.||-.+++|...|.++..+++.|+.+.-....
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aee 47 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEE 47 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998877655444
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=19 Score=43.49 Aligned_cols=115 Identities=30% Similarity=0.304 Sum_probs=87.6
Q ss_pred HHHHHHHhhhhhhh--hhhhHH-HHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 004861 599 VERLKKEKQILEEN--TMKKLS-EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKK 675 (726)
Q Consensus 599 ~erlkKeKq~lEe~--T~KrLs-EmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk 675 (726)
...|.++|+.|++- |+|=-- -++.-+++---|+..-.+.+++|+.|.-.+..=||--|-.|.|...+--.+.-+-.+
T Consensus 498 ~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek 577 (698)
T KOG0978|consen 498 HKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEK 577 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554 332221 123344555556666667888889899899999999999999999999999888889
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
+-+++..-+.|-+.+-.||..++.|..+|++|++..+.
T Consensus 578 ~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~ 615 (698)
T KOG0978|consen 578 SEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR 615 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887653
No 45
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.83 E-value=37 Score=41.68 Aligned_cols=101 Identities=25% Similarity=0.263 Sum_probs=53.1
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHH---HhhhHHHHHH-HHHHHH-hHHHhH--HHHHHHHHHHHHhHHHHHhHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRL---EVENTALRQE-MEAAKL-RAAESA--ASCQEVSKREKKTQMKFQSWEK 685 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrL---E~EnA~lR~E-mEAaKL-~A~ES~--~sc~ev~krekk~lkk~qsWEk 685 (726)
-++.+.+.+..+.+.....++.....+++ +.++..+... .+.+++ ..-... ....++.++-.+.+.....+++
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~ 389 (908)
T COG0419 310 LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEE 389 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666666666666655555444444444 5555555222 222222 111111 1122333333345677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 686 QKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 686 QK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
+...+.+++.....++..+++.+...++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 417 (908)
T COG0419 390 AIQELKEELAELSAALEEIQEELEELEK 417 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666666665555554
No 46
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.75 E-value=19 Score=41.70 Aligned_cols=118 Identities=26% Similarity=0.307 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhhhHHHHHH----HHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhH---------
Q 004861 572 NQKVMQAARRLSKDKAELKT----LRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAV--------- 638 (726)
Q Consensus 572 nqKvmQaarRL~kdk~ELks----LR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~v--------- 638 (726)
+|=..-..++|-....||-- .-=||-++++.=+--|..=.+|-|.|-|-.++=.--.-||.+-.+--
T Consensus 357 QqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 357 QQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44455667777776666642 22366666666666666667888888887776655555665554433
Q ss_pred ----------HHHHhhhHHHHHHHHHHHHhH----HHhH-HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004861 639 ----------RRLEVENTALRQEMEAAKLRA----AESA-ASCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (726)
Q Consensus 639 ----------rrLE~EnA~lR~EmEAaKL~A----~ES~-~sc~ev~krekk~lkk~qsWEkQK~lLQEELa 695 (726)
+=||++.+..++|+|.-.|+- .|-| +|-++++||||++.. .+---||+|+-
T Consensus 437 eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~E------qefLslqeEfQ 502 (527)
T PF15066_consen 437 EIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETRE------QEFLSLQEEFQ 502 (527)
T ss_pred HHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 457889999999999888763 3444 488999999998764 34445666654
No 47
>PF13514 AAA_27: AAA domain
Probab=91.69 E-value=22 Score=44.63 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=16.9
Q ss_pred CCCCchhHHHHHHhHHHHHHHHHHHHhHHHHH
Q 004861 541 VPQDKRDEIILKLIPRVRELHNQLHEWTEWAN 572 (726)
Q Consensus 541 Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAn 572 (726)
+|.+--.+.+...+..++++...++++.+|..
T Consensus 719 L~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 750 (1111)
T PF13514_consen 719 LPADASPEEALEALELLEELREALAEIRELRR 750 (1111)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555544
No 48
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=91.58 E-value=18 Score=37.04 Aligned_cols=109 Identities=19% Similarity=0.193 Sum_probs=79.1
Q ss_pred hhhhHHHHH--HHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh-----HHHhHHHHHHHHHHHHHhHHHHHhHHH
Q 004861 613 TMKKLSEME--NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR-----AAESAASCQEVSKREKKTQMKFQSWEK 685 (726)
Q Consensus 613 T~KrLsEmE--nAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~-----A~ES~~sc~ev~krekk~lkk~qsWEk 685 (726)
+...|...| .+|+++=.++-.+.-.+.++.... ..-|..+|. -.....|+..++.+-.+.+-.++..++
T Consensus 47 ~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~----a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~ 122 (216)
T cd07627 47 TLEALSSLELSKSLSDLLAALAEVQKRIKESLERQ----ALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAES 122 (216)
T ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776 566666666655555555555442 222333332 234566777889999999999999999
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 004861 686 QKALFQEELVTE-------KRKVVQLLQELDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 686 QK~lLQEELa~e-------K~Kl~~l~qel~qak~~q~q~E~~w~q~ 725 (726)
+-.+++..+..- ..|+.++..++..++..+.+++.+|-.|
T Consensus 123 ~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~i 169 (216)
T cd07627 123 ELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEV 169 (216)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888876 4799999999999999999999888654
No 49
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=91.29 E-value=4.7 Score=47.04 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=63.0
Q ss_pred hhhhhhHHHHHHHHHHhhh-hhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHH
Q 004861 611 ENTMKKLSEMENALCKASG-QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKAL 689 (726)
Q Consensus 611 e~T~KrLsEmEnAL~kas~-QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~l 689 (726)
+...+||-||.|-+--.-. .+++-...-++.| ++...+..-|++++.|.+....-+|..++.+...++++ |.+|+.
T Consensus 178 ~~~~~r~~e~Q~qv~qsl~~el~~i~~~~q~~e-qi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~--eqekiR 254 (591)
T KOG2412|consen 178 KEVKRRLLEEQNQVLQSLDTELQAIQREKQRKE-QIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQ--EQEKIR 254 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh--HHHHHH
Confidence 3456677888886654333 4444444444444 44555566677888999999999999999988888877 455666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004861 690 FQEELVTEKRKVVQLLQE 707 (726)
Q Consensus 690 LQEELa~eK~Kl~~l~qe 707 (726)
+-||=..|++|-++.+.+
T Consensus 255 ~~eekqeee~ke~e~~~~ 272 (591)
T KOG2412|consen 255 AEEEKQEEERKEAEEQAE 272 (591)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655543
No 50
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.21 E-value=2.3 Score=45.94 Aligned_cols=120 Identities=22% Similarity=0.336 Sum_probs=82.1
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH-----H-----HHhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q 004861 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQA-----A-----RRLSKDKAELKTLRQEKEEVERLKKEKQIL 609 (726)
Q Consensus 540 ~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQa-----a-----rRL~kdk~ELksLR~EkEE~erlkKeKq~l 609 (726)
|+-.+=||=+=-+-+..|+||+.||.--+-=-+||-+|- | ++...++.|.-+|..|. ++|-..-..
T Consensus 3 Wa~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREn---q~l~e~c~~- 78 (307)
T PF10481_consen 3 WAVEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKREN---QSLMESCEN- 78 (307)
T ss_pred chHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHHH-
Confidence 666666777777888899999999988887778887763 1 33444444444443332 111111111
Q ss_pred hhhhhhhHHH----HHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhH
Q 004861 610 EENTMKKLSE----MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (726)
Q Consensus 610 Ee~T~KrLsE----mEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (726)
.|.++.||+. -|.-+.--.|||.++.-.+.+||.|+..|+.|||-+...+....
T Consensus 79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 1236666654 36667777899999999999999999999999998887776443
No 51
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=91.11 E-value=4.1 Score=46.50 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 004861 694 LVTEKRKVVQLLQELDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 694 La~eK~Kl~~l~qel~qak~~q~q~E~~w~q~ 725 (726)
|-+--+||..+.+.|..+..+-.+---||.|+
T Consensus 392 lDdVD~kIleak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 392 LDDVDHKILEAKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445789999999999999988888999985
No 52
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.01 E-value=28 Score=46.12 Aligned_cols=117 Identities=25% Similarity=0.279 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhhhhhhhh---hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHH
Q 004861 597 EEVERLKKEKQILEENTM---KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKRE 673 (726)
Q Consensus 597 EE~erlkKeKq~lEe~T~---KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~kre 673 (726)
+.++.+|.|..+|++-+- .=|.-=++-+...+.+|=.||.-+.+|++|..-||+|.+.=|.. .+....=.+-+-++
T Consensus 696 ~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t-~~rL~~e~~~l~~e 774 (1822)
T KOG4674|consen 696 KNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKET-EERLSQELEKLSAE 774 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344556666666663321 12333456667788899999999999999999999998876653 33333333334444
Q ss_pred HHhHH-HHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 004861 674 KKTQM-KFQSWEKQKALFQEELVTEK----RKVVQLLQELDQAKAL 714 (726)
Q Consensus 674 kk~lk-k~qsWEkQK~lLQEELa~eK----~Kl~~l~qel~qak~~ 714 (726)
+..|. .+-.++.++.-+++..++.| ++|.+|..+|+.++.-
T Consensus 775 ~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k 820 (1822)
T KOG4674|consen 775 QESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK 820 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 44555555555555555433 3444555555555443
No 53
>PF13514 AAA_27: AAA domain
Probab=90.99 E-value=19 Score=45.08 Aligned_cols=112 Identities=30% Similarity=0.445 Sum_probs=75.7
Q ss_pred CcccccCCCCchhHHHHHHhHHHHHHHHHHHHhH----HHH--HHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q 004861 535 TSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWT----EWA--NQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQI 608 (726)
Q Consensus 535 ~~~~~~Vp~D~KDEmilkLv~rv~eLq~qlqewt----dWA--nqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~ 608 (726)
+.-.-|-|+ .+.-.|-.++.++++++.++++.. +|. .+.+-++-.++..-..+++.|+.++...++++.-...
T Consensus 138 ea~~Lfkpr-g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~ 216 (1111)
T PF13514_consen 138 EADELFKPR-GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPL 216 (1111)
T ss_pred HHHHhhCCC-CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344468888 666678899999999999988764 454 3556777788888888889999998888887542221
Q ss_pred -------------------hhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHH
Q 004861 609 -------------------LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTA 647 (726)
Q Consensus 609 -------------------lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~ 647 (726)
|-+....|+.+++..+..+..++++....+..|+.+...
T Consensus 217 ~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 274 (1111)
T PF13514_consen 217 LAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDA 274 (1111)
T ss_pred HHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 113455666666666666666666655555555554443
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.95 E-value=17 Score=46.07 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=8.7
Q ss_pred CCCcCcccCcCcc
Q 004861 525 CGYAGILSDDTSL 537 (726)
Q Consensus 525 ~~~~~i~~D~~~~ 537 (726)
.+|+||.+|=..+
T Consensus 581 dslyGl~LdL~~I 593 (1201)
T PF12128_consen 581 DSLYGLSLDLSAI 593 (1201)
T ss_pred cccceeEeehhhc
Confidence 4788888884343
No 55
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.88 E-value=22 Score=36.76 Aligned_cols=86 Identities=14% Similarity=0.265 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEEL 694 (726)
.|+..+...+.....+++.....+.++..++...+..+. .......+..+...+....+..++.+...++.++
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 142 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-------ASQDLVESRQEQLEELQNELEERKQRLSQLQSQL 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555554444 1112223333334444556666777767788888
Q ss_pred HHHHHHHHHHHHH
Q 004861 695 VTEKRKVVQLLQE 707 (726)
Q Consensus 695 a~eK~Kl~~l~qe 707 (726)
...+..+.+....
T Consensus 143 ~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 143 ARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 8777776654443
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.73 E-value=25 Score=44.62 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q 717 (726)
.|+...-|.|++...+.|..+++.++..+.+...+
T Consensus 954 ~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E 988 (1293)
T KOG0996|consen 954 TEKELDDLTEELKGLEEKAAELEKEYKEAEESLKE 988 (1293)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666655555554444333
No 57
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.69 E-value=12 Score=46.49 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=18.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
.-.++.+-.++-.+.|.+|..-+.-|.++|.+|+++
T Consensus 323 ~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 323 KKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 333444444455555555555555555555555443
No 58
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.60 E-value=39 Score=41.54 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=15.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHH
Q 004861 562 NQLHEWTEWANQKVMQAARRLSKDKAE 588 (726)
Q Consensus 562 ~qlqewtdWAnqKvmQaarRL~kdk~E 588 (726)
....+|.++..+++++.-..+-.....
T Consensus 525 ~~~~~~~~~~~e~l~~~~e~~~~~~~~ 551 (908)
T COG0419 525 EALKEELEEKLEKLENLLEELEELKEK 551 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344566667766666665555555555
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.10 E-value=15 Score=43.53 Aligned_cols=86 Identities=20% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004861 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKV 701 (726)
Q Consensus 622 nAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl 701 (726)
+.|.|-.+.||.+...+..|..+=-..|..+..-..+..+.. ++.+ ..-++-+.+++.|..+--.+.+||..-.+.+
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~-~~~~--~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~ 470 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKA-SNRE--SESKQKLQEIKELREEIKEIEEEIRQKEELY 470 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-hhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443332222221 1111 1111233455555555555555555555555
Q ss_pred HHHHHHHHH
Q 004861 702 VQLLQELDQ 710 (726)
Q Consensus 702 ~~l~qel~q 710 (726)
.+|..+++.
T Consensus 471 ~qL~~e~e~ 479 (594)
T PF05667_consen 471 KQLVKELEK 479 (594)
T ss_pred HHHHHHHHh
Confidence 555555544
No 60
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.10 E-value=21 Score=45.91 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=65.7
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhh
Q 004861 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASG 629 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~ 629 (726)
+-.|-.++..|+.=+..+..|+....-+.+..+-....++..++.+.++. +..+..+..
T Consensus 239 le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 297 (1353)
T TIGR02680 239 LERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRA---------------------RDELETARE 297 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence 33444445555555555666666655555555555555555555444433 333444444
Q ss_pred hhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
.+++++.....||.+...++.|.++.+-+..--.. ++..+.-..+..+.++.....+++..-++++.++++++.
T Consensus 298 ~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~------~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~ 371 (1353)
T TIGR02680 298 EERELDARTEALEREADALRTRLEALQGSPAYQDA------EELERARADAEALQAAAADARQAIREAESRLEEERRRLD 371 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555444322211100 011111113444555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 004861 710 QAKALQEQL 718 (726)
Q Consensus 710 qak~~q~q~ 718 (726)
.+...-.+.
T Consensus 372 ~~~~r~~~~ 380 (1353)
T TIGR02680 372 EEAGRLDDA 380 (1353)
T ss_pred HHHHHHHHH
Confidence 444443333
No 61
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.09 E-value=16 Score=36.10 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEEL 694 (726)
..+..++.......+++......+..++.....+++|+. ++.+..+......+.-+.+...++++.
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~--------------~l~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (191)
T PF04156_consen 109 SELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIR--------------ELQKELQDSREEVQELRSQLERLQENL 174 (191)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555554444444433 222223333334444444444555555
Q ss_pred HHHHHHHHHHHHHHH
Q 004861 695 VTEKRKVVQLLQELD 709 (726)
Q Consensus 695 a~eK~Kl~~l~qel~ 709 (726)
....+++..++..++
T Consensus 175 ~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 175 QQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555544443
No 62
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.08 E-value=58 Score=41.00 Aligned_cols=186 Identities=18% Similarity=0.252 Sum_probs=107.6
Q ss_pred cCcccCcCcccccCCCCchhHHHH-----------------HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q 004861 528 AGILSDDTSLEHLVPQDKRDEIIL-----------------KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELK 590 (726)
Q Consensus 528 ~~i~~D~~~~~~~Vp~D~KDEmil-----------------kLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELk 590 (726)
++|.+| +|.+|.|||+=-|..- .|.+...||.+.=.+. .=-.+++-+-++.|-.-..+..
T Consensus 136 fNIQi~--NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e-~~Le~~~~~~~~~l~~L~~~~~ 212 (1072)
T KOG0979|consen 136 FNIQID--NLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDE-KSLEDKLTTKTEKLNRLEDEID 212 (1072)
T ss_pred HhcccC--chhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHH
Confidence 667777 8999999998766531 1444445554332222 2223444455555555555555
Q ss_pred HHHHhHHHHHHHHH---Hhhhh---------hhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHH---HHHHHH-
Q 004861 591 TLRQEKEEVERLKK---EKQIL---------EENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL---RQEMEA- 654 (726)
Q Consensus 591 sLR~EkEE~erlkK---eKq~l---------Ee~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~l---R~EmEA- 654 (726)
.|+++.|-+-..+. .-..| ++-|++.- |+.. -.|||...+|.|+-+...| +.|||-
T Consensus 213 ~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~-----~~k~---~~~r~k~~~r~l~k~~~pi~~~~eeLe~~ 284 (1072)
T KOG0979|consen 213 KLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYN-----AYKQ---AKDRAKKELRKLEKEIKPIEDKKEELESE 284 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHH-----HHHH---HHHHHHHHHHHHHHhhhhhhhhhhhHHhH
Confidence 55555443322111 11111 22233222 2221 2345555555554443332 333333
Q ss_pred -HHH--hHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 655 -AKL--RAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 655 -aKL--~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
+++ .-++-...|-++..|-++...++.-.++.-..++-++..-|.+-.+.|.++.++++-..+.++...+
T Consensus 285 ~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 285 KKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 222 1234456677777787888888888888888899999999999999999999999988888776544
No 63
>PF13166 AAA_13: AAA domain
Probab=90.06 E-value=46 Score=39.19 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhH-HHHHhHHHHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ-MKFQSWEKQKALFQEEL 694 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~l-kk~qsWEkQK~lLQEEL 694 (726)
.+..+...+......++..|..+..++.+...++......-+ .....-.+...++.+.+ +.++..++++..+++++
T Consensus 364 ~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 440 (712)
T PF13166_consen 364 DIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLI---AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEI 440 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666677777777777666666654433322 12222222233343333 47788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 695 VTEKRKVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 695 a~eK~Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
..-+.+|.+|++++.......+.|-...+
T Consensus 441 ~~~~~~i~~l~~~~~~~~~~~~~iN~~L~ 469 (712)
T PF13166_consen 441 KKIEKEIKELEAQLKNTEPAADRINEELK 469 (712)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999998877777776655443
No 64
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.02 E-value=4 Score=44.35 Aligned_cols=119 Identities=21% Similarity=0.273 Sum_probs=63.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHH
Q 004861 587 AELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (726)
Q Consensus 587 ~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc 666 (726)
.++..+++|++.-.++=+.-+ -++.+-..+.+.+..|.+...+-++....++.||.|.+++.+|++..+....
T Consensus 16 ~~~~~~~~E~~~Y~~fL~~l~-~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~------ 88 (314)
T PF04111_consen 16 KQLEQAEKERDTYQEFLKKLE-EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE------ 88 (314)
T ss_dssp ---------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 344455555555554433332 1122334456666677777777777788888999999999999887554332
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 667 ~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
++-+.|.+..+..-....|..-+++|+..-+..+..++++|++.+.
T Consensus 89 -~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 89 -ELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2334555556666666667777777777777777777777766543
No 65
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.73 E-value=15 Score=44.98 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=87.0
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhh-----hhhhHHHHHHHHHHhhhhhhh----hhhhHHHHHhhhHHHHHHHHHHHHhH
Q 004861 589 LKTLRQEKEEVERLKKEKQILEEN-----TMKKLSEMENALCKASGQVER----ANSAVRRLEVENTALRQEMEAAKLRA 659 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~-----T~KrLsEmEnAL~kas~Qler----Ans~vrrLE~EnA~lR~EmEAaKL~A 659 (726)
..-||.||.+++..+=+|+-|-++ ..|++++.+.-++.-+..+|- -.+.+| +..|.+++.|||-.||++
T Consensus 50 iqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQir--iLQn~c~~lE~ekq~lQ~ 127 (1265)
T KOG0976|consen 50 IQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIR--ILQNKCLRLEMEKQKLQD 127 (1265)
T ss_pred HHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 445788999999988888877665 678889999888888765543 233344 457999999999999998
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhh
Q 004861 660 AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVV------------------QLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 660 ~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~------------------~l~qel~qak~~q~q~E~~ 721 (726)
.-++.. +- +||.++ .+..-...--.|.+||.+..+-|. ++++-|+.+....++.|-+
T Consensus 128 ti~~~q--~d-~ke~et--elE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k 202 (1265)
T KOG0976|consen 128 TIQGAQ--DD-KKENEI--EIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEK 202 (1265)
T ss_pred HHHHHH--HH-HHHHHH--HHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776652 22 233222 333444445556666666655443 4556666667777777766
Q ss_pred hhcC
Q 004861 722 FFSF 725 (726)
Q Consensus 722 w~q~ 725 (726)
.+||
T Consensus 203 ~~k~ 206 (1265)
T KOG0976|consen 203 LEKF 206 (1265)
T ss_pred HHHH
Confidence 6655
No 66
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.51 E-value=31 Score=43.93 Aligned_cols=53 Identities=30% Similarity=0.331 Sum_probs=32.6
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHH---hhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 601 RLKKEKQILEENTMKKLSEMENALCK---ASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 601 rlkKeKq~lEe~T~KrLsEmEnAL~k---as~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
....+|+.|+.-.+-.-.|||++-++ +-.-++++++.-+.||.-+..+++|-|
T Consensus 505 ~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 505 EEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESE 560 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHH
Confidence 34445666666666666677777332 222356677777777777777776666
No 67
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.33 E-value=49 Score=38.49 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=4.0
Q ss_pred HHHHHHHhHH
Q 004861 588 ELKTLRQEKE 597 (726)
Q Consensus 588 ELksLR~EkE 597 (726)
++..|+.|.+
T Consensus 250 ~l~~Lq~El~ 259 (522)
T PF05701_consen 250 ELESLQAELE 259 (522)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 68
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.33 E-value=8.9 Score=38.84 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (726)
|-+||.+|.++...|-++-+...+|+.+..++..+.+.=--+|-.....=.|-+- +..|.+.+.-+.+..-|++.+..
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLA--r~al~~k~~~e~~~~~l~~~~~~ 109 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLA--REALQRKADLEEQAERLEQQLDQ 109 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888888877766544444333222111110 23444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004861 697 EKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 697 eK~Kl~~l~qel~qak~~q~q~E 719 (726)
....+.+|...+.+.+....+++
T Consensus 110 ~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 110 AEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444
No 69
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=89.16 E-value=22 Score=37.67 Aligned_cols=46 Identities=13% Similarity=0.291 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHH---hhhHHHHHHHHHHHHhHHHh
Q 004861 617 LSEMENALCKASGQVERANSAVRRLE---VENTALRQEMEAAKLRAAES 662 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE---~EnA~lR~EmEAaKL~A~ES 662 (726)
|..++..+..+..+++.|.....|.+ .+.+--+.+++.++......
T Consensus 99 ~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a 147 (327)
T TIGR02971 99 VAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTA 147 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 44444555555555555544444432 34555566666666544333
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.12 E-value=21 Score=42.57 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 645 NTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 645 nA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
...|=+.|+-=|.-++...+.=.++...=.+...+|...-.+|+-|..-|-+|.+-..+|...|.+.++
T Consensus 141 ~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~ 209 (617)
T PF15070_consen 141 RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQE 209 (617)
T ss_pred HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777778888777888888888888877777777776666666666655544
No 71
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.10 E-value=26 Score=38.36 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHh-----------HHHHHhHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT-----------QMKFQSWEK 685 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~-----------lkk~qsWEk 685 (726)
+..|...-..-..+++.++..+-+|....+.|+.|.+-.+-...|-..-=++.+++=+.. .+++..-+.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666666666666666555543333333111111122221111 123344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 686 QKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (726)
Q Consensus 686 QK~lLQEELa~eK~Kl~~l~qel~qak~~q 715 (726)
|...+...|.+-+.|+.+++.++..|+..-
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555554433
No 72
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.03 E-value=17 Score=37.40 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHH-----HHHHHHHHHHHhHHHHHhHHHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA-----SCQEVSKREKKTQMKFQSWEKQKA 688 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~-----sc~ev~krekk~lkk~qsWEkQK~ 688 (726)
.--+-||+..|.++-..|-++-+..+++|.+..++..+.+-=.-+|-.... --.+++.+.+.....+...+.|-.
T Consensus 30 ~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~ 109 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELA 109 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678999999999999999999999998888887766543333332221 123456677777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 689 LFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 689 lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
.++.-+..-+.+|.+|++.++.++..+..+=+|
T Consensus 110 ~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar 142 (219)
T TIGR02977 110 AVEETLAKLQEDIAKLQAKLAEARARQKALAIR 142 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888777654443
No 73
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.94 E-value=23 Score=42.25 Aligned_cols=166 Identities=20% Similarity=0.332 Sum_probs=93.3
Q ss_pred CCCCchhHHHHHH------hHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh---H--HHH-----------HHHHHhHHH
Q 004861 541 VPQDKRDEIILKL------IPRVRELHNQLHEWTEWANQKVMQAARRLSKD---K--AEL-----------KTLRQEKEE 598 (726)
Q Consensus 541 Vp~D~KDEmilkL------v~rv~eLq~qlqewtdWAnqKvmQaarRL~kd---k--~EL-----------ksLR~EkEE 598 (726)
++-|+|.+..+.+ =|+=-.|-.-++-....-+ |.-++.+++..- + ... ..|++.+|+
T Consensus 322 LsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~-kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~ 400 (652)
T COG2433 322 LSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKP-KLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEE 400 (652)
T ss_pred CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhh
Confidence 3456666633322 1344455566666666666 777777777654 2 111 345666655
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHH---
Q 004861 599 VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKK--- 675 (726)
Q Consensus 599 ~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk--- 675 (726)
.+ -+|+..-++.-.-.+.-.++.|.+-..+ |.+|+.||+.|+.+.|.-|---.+--.-|.++.++...
T Consensus 401 ~~--p~e~~~~~~~e~~ei~~~~~~i~~~~~~-------ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~ 471 (652)
T COG2433 401 ER--PREKEGTEEEERREITVYEKRIKKLEET-------VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVR 471 (652)
T ss_pred hc--cccccccccccccchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 1122111222222333444444444443 44555555555555555543333333444444444332
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
--+.++..+..-..|+-+|..++.++.+|..+|+++++.+.
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22356677788889999999999999999999999987664
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.82 E-value=78 Score=40.43 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=27.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhH---HHHHHHHHHHHHHhhhhHHHHHHHHHhHHH
Q 004861 548 EIILKLIPRVRELHNQLHEWT---EWANQKVMQAARRLSKDKAELKTLRQEKEE 598 (726)
Q Consensus 548 EmilkLv~rv~eLq~qlqewt---dWAnqKvmQaarRL~kdk~ELksLR~EkEE 598 (726)
..|-.+..+..+++.+++.-. +=+...+.++...+......+..|+.+++.
T Consensus 614 ~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 667 (1201)
T PF12128_consen 614 DQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQ 667 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345566666666666654332 223445555555555555555555555443
No 75
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.60 E-value=6.1 Score=48.03 Aligned_cols=114 Identities=24% Similarity=0.337 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhhhhh----------hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHh-----------------------
Q 004861 597 EEVERLKKEKQILEE----------NTMKKLSEMENALCKASGQVERANSAVRRLEV----------------------- 643 (726)
Q Consensus 597 EE~erlkKeKq~lEe----------~T~KrLsEmEnAL~kas~QlerAns~vrrLE~----------------------- 643 (726)
++.+.++-+|..||. .++-+|.|+|.-|.....||+.++..-..+|.
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~ 675 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA 675 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 344444545554443 58889999999999999999998887777666
Q ss_pred -----hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhH---HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 004861 644 -----ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW---EKQKALFQE-ELVTEKRKVVQLLQELDQ 710 (726)
Q Consensus 644 -----EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsW---EkQK~lLQE-ELa~eK~Kl~~l~qel~q 710 (726)
+...|..|++.-|..-.|..+-|+++-..-.+.-+....| +..+-.-|| ||++--.||++=|+.+.-
T Consensus 676 ~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~s 751 (769)
T PF05911_consen 676 EELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIAS 751 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666777777776643333322222233 455555666 888888888888887653
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.59 E-value=10 Score=43.24 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=74.3
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH----HHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 004861 551 LKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELK----TLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (726)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELk----sLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (726)
-.+..|+..|.+.+++ -+++|. .+.-+++||. ..+.+++..+++..|+|-++..+-+.|+.-+.-+..
T Consensus 157 ~~~~~~i~~l~~~~~~---l~~~~~-----~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~e 228 (420)
T COG4942 157 PARAERIDALKATLKQ---LAAVRA-----EIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEE 228 (420)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544433 334443 3455667887 566777788888889999999999999988888888
Q ss_pred hhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHH
Q 004861 627 ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (726)
Q Consensus 627 as~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~E 661 (726)
--.+=.+....+.++|.++|.-|..+||++-.+.+
T Consensus 229 L~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~~ 263 (420)
T COG4942 229 LRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877888888889998998777777777655444
No 77
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.57 E-value=36 Score=35.99 Aligned_cols=122 Identities=23% Similarity=0.335 Sum_probs=78.5
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHH
Q 004861 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~e 668 (726)
|+.+|.+.|. ...+-++.+|..=..++.++.....+.+..+.++..-+.++......++.|++..+-.-..=.....+
T Consensus 171 L~eiR~~ye~--~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 171 LREIRAQYEE--IAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHH--HHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 6667777763 45666778888888889999888888888888888888888888887777777644332222222222
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (726)
Q Consensus 669 v~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q 715 (726)
-+...-+.++.|...-..|+.||..-+..+.+..++.+..-..+
T Consensus 249 ---le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K 292 (312)
T PF00038_consen 249 ---LEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVK 292 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344555666666666666666666666665555544433
No 78
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.45 E-value=29 Score=41.22 Aligned_cols=138 Identities=20% Similarity=0.261 Sum_probs=69.2
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHh-hhhh--hhhhhhHHHH----H
Q 004861 549 IILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEK-QILE--ENTMKKLSEM----E 621 (726)
Q Consensus 549 milkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeK-q~lE--e~T~KrLsEm----E 621 (726)
.|-.|..++.+++.+++..+. ...++..+..+.+....++|+.-++++.- ..|. |+++.+|.++ +
T Consensus 336 ~l~~l~~~i~~~~~~~~~l~~--------~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 336 QLDELESQIEELEAEIKMLKS--------SLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 344455555555555554431 22345555566666666666555555433 3343 2456555543 2
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q 004861 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE 697 (726)
Q Consensus 622 nAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~e 697 (726)
+-|..-.+|-|.... .|..|...||.....-...+.+=.....++-.+-+.....++.||.+...|+.|+..-
T Consensus 408 ~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 408 QRLVELAQQWEKHRA---PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333344444444333 3344444444333222222222233444455555666667888888888888887653
No 79
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.37 E-value=13 Score=35.73 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHH---HhHHHHHHHHHHHHHhHHHHHhHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAA---ESAASCQEVSKREKKTQMKFQSWEKQK 687 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~---ES~~sc~ev~krekk~lkk~qsWEkQK 687 (726)
.|.....++-.+.+....+++.+..+.+|+.+++++.+|+..++-... .-..+-....|.++..+.|++.|-.++
T Consensus 50 ~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 50 DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777778888888888888888888877765543322 223333445566666666666665554
No 80
>PRK01156 chromosome segregation protein; Provisional
Probab=88.22 E-value=28 Score=42.27 Aligned_cols=29 Identities=7% Similarity=0.224 Sum_probs=11.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 680 FQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa~eK~Kl~~l~qel 708 (726)
+..-+++...|..++..-+..|..+.+++
T Consensus 690 l~~l~~~~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 690 LDDAKANRARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333333334443333333333333333
No 81
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.16 E-value=39 Score=41.45 Aligned_cols=142 Identities=21% Similarity=0.239 Sum_probs=86.0
Q ss_pred HHHhhhhHHHHH-HHHHhHHHHHHHHHHhhhhhhh---hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhh-hHHHHHH--
Q 004861 579 ARRLSKDKAELK-TLRQEKEEVERLKKEKQILEEN---TMKKLSEMENALCKASGQVERANSAVRRLEVE-NTALRQE-- 651 (726)
Q Consensus 579 arRL~kdk~ELk-sLR~EkEE~erlkKeKq~lEe~---T~KrLsEmEnAL~kas~QlerAns~vrrLE~E-nA~lR~E-- 651 (726)
.+.|-.+-++.+ -..+-+-|++||-.--+.+|.. +-|++.+++..|.++..++...+..+.-.-.+ +--.+.|
T Consensus 550 ~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~ell 629 (775)
T PF10174_consen 550 IQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELL 629 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHH
Confidence 334444444443 2344466777776655555443 55889999999999999998777776643222 2222222
Q ss_pred HHHHHHhHHHhHHHHHHHHHHH--------HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 652 MEAAKLRAAESAASCQEVSKRE--------KKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 652 mEAaKL~A~ES~~sc~ev~kre--------kk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
-+|-+++.+.++.-.+-.+.+. .+.-+.+.-++.+-..++.|+..-+-++...|+.|..-...-..+|+
T Consensus 630 eea~Ree~~~t~e~~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~ 706 (775)
T PF10174_consen 630 EEALREEVSITEERELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLESSQQSLMERDQELNALEA 706 (775)
T ss_pred HHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2444555555555333333333 22335777788888888888888888888888877655544444443
No 82
>PRK11281 hypothetical protein; Provisional
Probab=87.91 E-value=12 Score=47.30 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHH
Q 004861 570 WANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (726)
Q Consensus 570 WAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR 649 (726)
=-++++-+|.+++..-..+|..|+++-+....-.-.+..+.+ =..+|.+.|..|..+..++..+|+..-.+...-..-+
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~q-LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ 162 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ 162 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 345667777777776666666666532222100001212211 2345566666666666666666666666666555555
Q ss_pred HHHHHHHHh
Q 004861 650 QEMEAAKLR 658 (726)
Q Consensus 650 ~EmEAaKL~ 658 (726)
..|.++.-+
T Consensus 163 ~~lsea~~R 171 (1113)
T PRK11281 163 AALYANSQR 171 (1113)
T ss_pred HHHHHHHHH
Confidence 555544443
No 83
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.87 E-value=17 Score=44.02 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=92.3
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHH
Q 004861 601 RLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKF 680 (726)
Q Consensus 601 rlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~ 680 (726)
-|=+|=-..|..=+-||.|+|+.|+.+-.+|+++.+-.-||...|.+++++.|...+.-..=-.-.-|..-||..-|-.+
T Consensus 20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35556666788888999999999999999999999999999999999999887777777666777888888999888888
Q ss_pred HhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 004861 681 QSWEKQKALFQEELV----------TEKRKVVQLLQELDQAKALQ 715 (726)
Q Consensus 681 qsWEkQK~lLQEELa----------~eK~Kl~~l~qel~qak~~q 715 (726)
--.|-+.+-||.-+. .-|+-|..|.+|.+..+.+-
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ql 144 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQL 144 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887554 44566667766666555443
No 84
>PRK09039 hypothetical protein; Validated
Probab=87.67 E-value=10 Score=41.70 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHH
Q 004861 612 NTMKKLSEMENALCKASGQVERANSAVRRLEVENTA 647 (726)
Q Consensus 612 ~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~ 647 (726)
-.+-+...++..|.....|++-|.+.--+||.-.+.
T Consensus 71 le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~ 106 (343)
T PRK09039 71 LERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE 106 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566667777777777777666666666654443
No 85
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.53 E-value=90 Score=39.35 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=15.3
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004861 674 KKTQMKFQSWEKQKALFQEELVTEKRKVV 702 (726)
Q Consensus 674 kk~lkk~qsWEkQK~lLQEELa~eK~Kl~ 702 (726)
...+..++.|..+...|++++.....++.
T Consensus 369 ~~~~~~l~~~~~~l~~l~~~~~~~~~~l~ 397 (1047)
T PRK10246 369 RAQFSQQTSDREQLRQWQQQLTHAEQKLN 397 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555554
No 86
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.37 E-value=54 Score=39.80 Aligned_cols=152 Identities=22% Similarity=0.326 Sum_probs=80.7
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhHHHH---HHHHHHHHHHhhhhHHHHHHHHHhHHHHHH--------HHHHhhhhhhhhh
Q 004861 546 RDEIILKLIPRVRELHNQLHEWTEWA---NQKVMQAARRLSKDKAELKTLRQEKEEVER--------LKKEKQILEENTM 614 (726)
Q Consensus 546 KDEmilkLv~rv~eLq~qlqewtdWA---nqKvmQaarRL~kdk~ELksLR~EkEE~er--------lkKeKq~lEe~T~ 614 (726)
..+.+.+|-.-|+.|+.+|+--.-=- .+++.+-+.==..-+.||..||+|-|+.|. .++|||.|.- ..
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~-LE 494 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ-LE 494 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45667788888888888876432211 122221111111336778888888887765 5555555532 22
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh---HHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR---AAESAASCQEVSKREKKTQMKFQSWEKQKALFQ 691 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~---A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQ 691 (726)
|||-|-..+-..+ -..|..|...-++|=|+|... |.-+-.-|.|..|. |.+-||.+.-.|+
T Consensus 495 krL~eE~~~R~~l----------EkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~------r~~~lE~E~~~lr 558 (697)
T PF09726_consen 495 KRLAEERRQRASL----------EKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQ------RRRQLESELKKLR 558 (697)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHH------HHHHHHHHHHHHH
Confidence 3333222111111 111222222222222222221 11111246665443 5577889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004861 692 EELVTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 692 EELa~eK~Kl~~l~qel~qak~~ 714 (726)
-||..-.+-+..+.+++++...+
T Consensus 559 ~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 559 RELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988898998888777766
No 87
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.32 E-value=89 Score=39.11 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 677 lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
+..+..+..+...++.++......+..+++.+++..+.+.+++-.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 415 (1042)
T TIGR00618 371 SCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555666665555555544443
No 88
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=87.30 E-value=16 Score=40.38 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=64.8
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
-|++|-.|..-|-+|+.-||..|-.-|+--.---|-+..-+|=...|=-++.+||-|+..-|.||+-..+--.-.-|+.+
T Consensus 67 q~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLke 146 (351)
T PF07058_consen 67 QVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKE 146 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777888999999999998886666566666678899999999999999999999999876554333334444
Q ss_pred HHHhhh
Q 004861 717 QLEVFF 722 (726)
Q Consensus 717 q~E~~w 722 (726)
.+.-|.
T Consensus 147 K~klRL 152 (351)
T PF07058_consen 147 KLKLRL 152 (351)
T ss_pred HHHHHH
Confidence 444333
No 89
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.11 E-value=46 Score=36.29 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 004861 553 LIPRVRELHNQLHEWTEWANQKVMQAARRLS 583 (726)
Q Consensus 553 Lv~rv~eLq~qlqewtdWAnqKvmQaarRL~ 583 (726)
+|..--.|+. -..|-+|..|-+-.--.-|-
T Consensus 126 ~vK~~aRl~a-K~~WYeWR~~ll~gl~~~L~ 155 (325)
T PF08317_consen 126 LVKTYARLEA-KKMWYEWRMQLLEGLKEGLE 155 (325)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333333433 36899999776544443333
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.02 E-value=73 Score=37.79 Aligned_cols=56 Identities=32% Similarity=0.441 Sum_probs=29.6
Q ss_pred HHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHH
Q 004861 592 LRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQE 651 (726)
Q Consensus 592 LR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~E 651 (726)
|+..+++.+.|+.+.+.+... ...+.........|.+.+...++.||.++..+...
T Consensus 180 L~~~~ee~e~L~~~~kel~~~----~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 180 LEQEEEEMEQLKQQQKELTES----SEELKEERESLKEQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666665555544432 12223333344455566666677777666655443
No 91
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=86.89 E-value=53 Score=36.11 Aligned_cols=165 Identities=21% Similarity=0.271 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHH-------HHHHHhHHHHHHHHHHhh---hhhhhhhhhHHHHHHHH
Q 004861 555 PRVRELHNQLHEWTEWANQKVMQAARRLSKDKAEL-------KTLRQEKEEVERLKKEKQ---ILEENTMKKLSEMENAL 624 (726)
Q Consensus 555 ~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~EL-------ksLR~EkEE~erlkKeKq---~lEe~T~KrLsEmEnAL 624 (726)
.+|++|.+.-.+-..=+++ .++-++.|-....+. +.|+.+.++.+...--.+ .-|.--.+++++++--|
T Consensus 69 eev~elK~kR~ein~kl~e-L~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~l 147 (294)
T COG1340 69 EEVQELKEKRDEINAKLQE-LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKEL 147 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444 455555555444432 344444443333322111 01333567888888888
Q ss_pred HHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004861 625 CKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQL 704 (726)
Q Consensus 625 ~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l 704 (726)
..+..|++.. .-++.|-.|.-.+|.+...=.=...+-+...|+....=.++..+.--..+.-..+++++..-..++.++
T Consensus 148 e~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~ 226 (294)
T COG1340 148 EDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDEL 226 (294)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8888877764 456778888888888877777777788888888888888888888888888888888887777777777
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004861 705 LQELDQAKALQEQLEVF 721 (726)
Q Consensus 705 ~qel~qak~~q~q~E~~ 721 (726)
+.++-.+.+-..+++.+
T Consensus 227 ~ee~~~~~~elre~~k~ 243 (294)
T COG1340 227 HEEFRNLQNELRELEKK 243 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77766666555555543
No 92
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=86.77 E-value=58 Score=39.66 Aligned_cols=165 Identities=27% Similarity=0.237 Sum_probs=89.9
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH-Hhhhhhhhhhhh---HH
Q 004861 543 QDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKK-EKQILEENTMKK---LS 618 (726)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkK-eKq~lEe~T~Kr---Ls 618 (726)
||.--+---.||+||.||-.-|+ .+-.|||||=-.=.-|..-|-.-.+++|+.-. =-|.+-+.|+-= +.
T Consensus 575 Qdear~~~~~lvqqv~dLR~~L~-------~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE 647 (961)
T KOG4673|consen 575 QDEARERESMLVQQVEDLRQTLS-------KKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE 647 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 44444444568888888876664 34567888865555555566555666655433 346677777654 45
Q ss_pred HHHHHHHHhhhhhhh-hhhhHHHHHhhhHHHHHHHH----------HHH--HhHHHhHHHHHH-----HHHHHHHhHHHH
Q 004861 619 EMENALCKASGQVER-ANSAVRRLEVENTALRQEME----------AAK--LRAAESAASCQE-----VSKREKKTQMKF 680 (726)
Q Consensus 619 EmEnAL~kas~Qler-Ans~vrrLE~EnA~lR~EmE----------AaK--L~A~ES~~sc~e-----v~krekk~lkk~ 680 (726)
-|..+|.+++.-=+| -.+.-.||---.-+||.-.+ +-+ |...++--+|++ +.+-..+.-.|+
T Consensus 648 ~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~ 727 (961)
T KOG4673|consen 648 ALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRA 727 (961)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777766555 22333333322222222111 111 111222222222 122222223344
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 681 qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~ 714 (726)
---++|-..+||||.+.+..+.+|.++....|..
T Consensus 728 ~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 728 AENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888888888887776655543
No 93
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=86.72 E-value=1.3 Score=34.33 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=31.3
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004861 213 ELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (726)
Q Consensus 213 GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am 247 (726)
.+|..|++.||.++.....++|..++.|+..|+.+
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~ 37 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDA 37 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 57889999999999999999999999999999864
No 94
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.63 E-value=11 Score=39.17 Aligned_cols=88 Identities=11% Similarity=0.263 Sum_probs=51.9
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHH
Q 004861 610 EENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKAL 689 (726)
Q Consensus 610 Ee~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~l 689 (726)
+...+-||-++|..|.++..+++.++.. +..+.+++..+.+.++-. ...-+.|...
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~---------------------~~~L~~~n~~ 143 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSV---------------------INGLKEENQK 143 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Confidence 4456777778887777777777665533 223333333333221111 2225667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 690 LQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
|++||+.-+.++..|..+++. +|++++-+|+.
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~---~~~~~~~~wf~ 175 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDD---KQRTIIMQWFM 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 777777777777777666544 56677777764
No 95
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.60 E-value=97 Score=38.80 Aligned_cols=105 Identities=11% Similarity=0.141 Sum_probs=51.3
Q ss_pred CchhHHHHHHh--HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh-----------HHHHHHHHHhHHHHHHHHHHhhhhh
Q 004861 544 DKRDEIILKLI--PRVRELHNQLHEWTEWANQKVMQAARRLSKD-----------KAELKTLRQEKEEVERLKKEKQILE 610 (726)
Q Consensus 544 D~KDEmilkLv--~rv~eLq~qlqewtdWAnqKvmQaarRL~kd-----------k~ELksLR~EkEE~erlkKeKq~lE 610 (726)
++|-+++.+|+ .+...+...+++...++..++-..-.++.-. .+++..|.+..++.....+..+. .
T Consensus 163 ~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~ 241 (1042)
T TIGR00618 163 KEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ-S 241 (1042)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 45556666664 4566677777777777777766666555421 12233333333322222221111 1
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHH
Q 004861 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (726)
Q Consensus 611 e~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR 649 (726)
.....++.++..++.....+++.+......++.+...+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (1042)
T TIGR00618 242 HAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLE 280 (1042)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112344455555554455455555555555554444443
No 96
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=86.55 E-value=36 Score=37.37 Aligned_cols=120 Identities=25% Similarity=0.462 Sum_probs=72.9
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHH----HHHHHHHHh--------hhhh--hhhhhhH
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKE----EVERLKKEK--------QILE--ENTMKKL 617 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkE----E~erlkKeK--------q~lE--e~T~KrL 617 (726)
.||.++.+|+.+++.|+ |.+-..-.+-.-++|...||.+.. +++.|-.+- ++++ |..+|+.
T Consensus 135 ~lvq~I~~L~k~le~~~-----k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 135 ELVQKIKELRKELEDAK-----KALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999986 333333334434444444444422 222222221 1222 2378888
Q ss_pred HHHHHHHHHhhhhhhhhhh-------hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHH
Q 004861 618 SEMENALCKASGQVERANS-------AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQ 681 (726)
Q Consensus 618 sEmEnAL~kas~QlerAns-------~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~q 681 (726)
.+|=.-+-+.+.+++.-+- -+|.|+..+..||.++.+++..+... ++..|-+....||+
T Consensus 210 de~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~e-----e~kera~ei~EKfk 275 (294)
T COG1340 210 DELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKRE-----ELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh
Confidence 8887777777777666554 45566666777777888887777665 44556666666665
No 97
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=86.49 E-value=1.4 Score=34.23 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=33.1
Q ss_pred HhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004861 212 AELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (726)
Q Consensus 212 ~GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am 247 (726)
...|..|++.||.++...+.++|..++.|+..||..
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~ 38 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINN 38 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 467889999999999999999999999999999865
No 98
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.19 E-value=88 Score=38.56 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=83.5
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 004861 545 KRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENAL 624 (726)
Q Consensus 545 ~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL 624 (726)
+||.=|+.|-.++.++.++..+. -.++..-+..|....++++ .|.-+. |.=+-||.+-+.-|
T Consensus 298 rk~~E~~~~qt~l~~~~~~~~d~-----------r~hi~~lkesl~~ke~~~~---~Lqsdv----e~Lr~rle~k~~~l 359 (775)
T PF10174_consen 298 RKKSELEALQTRLETLEEQDSDM-----------RQHIEVLKESLRAKEQEAE---MLQSDV----EALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH-----------HHHHHHHHHHHHHHHHHHH---HHHHhH----HHHHHHHHHHHHHH
Confidence 45555555666666666655543 2344555555555555544 111111 12267888888889
Q ss_pred HHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH--HhHHHh-HHHHHHHHHHHH--------------------HhHHHHH
Q 004861 625 CKASGQVERANSAVRRLEVENTALRQEMEAAK--LRAAES-AASCQEVSKREK--------------------KTQMKFQ 681 (726)
Q Consensus 625 ~kas~QlerAns~vrrLE~EnA~lR~EmEAaK--L~A~ES-~~sc~ev~krek--------------------k~lkk~q 681 (726)
.|++.|+++++.-.-++.+|+..++-.++... ++.... ..++.+.++..- ..+.++.
T Consensus 360 ~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lE 439 (775)
T PF10174_consen 360 EKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLE 439 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 99999999999998888888888887776543 332222 244555543322 3345556
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004861 682 SWEKQKALFQEELVTEKRK 700 (726)
Q Consensus 682 sWEkQK~lLQEELa~eK~K 700 (726)
-|...|..+++.|...+..
T Consensus 440 ea~~eker~~e~l~e~r~~ 458 (775)
T PF10174_consen 440 EALREKERLQERLEEQRER 458 (775)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777888888887665433
No 99
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.11 E-value=17 Score=38.11 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEE 693 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEE 693 (726)
--.|-+|+..|.++...+.++-+..++||.+...++.+++-=.=+|-.....=.|.+- ++.|.+.++.|.+...++.+
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~le~~~~~~~~~ 107 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQSLEDLAKALEAE 107 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999998888876544333333222222222 23444555556665555555
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhh
Q 004861 694 LVTEKRKVVQ-------LLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 694 La~eK~Kl~~-------l~qel~qak~~q~q~E~~w~ 723 (726)
+......+.+ |.+.+.+.+..++.+.++|.
T Consensus 108 ~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 108 LQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444 44444444555555555553
No 100
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.89 E-value=51 Score=34.89 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=5.4
Q ss_pred HHHHHHHHhHH
Q 004861 587 AELKTLRQEKE 597 (726)
Q Consensus 587 ~ELksLR~EkE 597 (726)
.++..||++.+
T Consensus 103 ~el~~lrk~ld 113 (312)
T PF00038_consen 103 EELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhhhhhhhh
Confidence 34445555554
No 101
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.75 E-value=86 Score=40.23 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (726)
++++++|+|++..+++.++..-+.-+-.|+..---++.+.+--+..
T Consensus 424 ~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~ 469 (1293)
T KOG0996|consen 424 ARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDS 469 (1293)
T ss_pred HHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777666666655554444444444333333
No 102
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.69 E-value=55 Score=41.20 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=77.2
Q ss_pred HHHHHHHhhhhHHH----HHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhh-------hhhhHHHHHh
Q 004861 575 VMQAARRLSKDKAE----LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVER-------ANSAVRRLEV 643 (726)
Q Consensus 575 vmQaarRL~kdk~E----LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Qler-------Ans~vrrLE~ 643 (726)
|-.-..+|..++.| |..||.|||.++.- |-.-+|+..-+|--+.-.+.|++. +-...++++-
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~-------~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLREEKEQLKAR-------ETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 44444445555544 45677777766555 556778887777777777777765 4556677777
Q ss_pred hhHHHHHHHHHHH-----HhHHHhHHHHHH----------------------------HHHHHHHhHHH-HHhHHHHHHH
Q 004861 644 ENTALRQEMEAAK-----LRAAESAASCQE----------------------------VSKREKKTQMK-FQSWEKQKAL 689 (726)
Q Consensus 644 EnA~lR~EmEAaK-----L~A~ES~~sc~e----------------------------v~krekk~lkk-~qsWEkQK~l 689 (726)
++.+...||..-+ |..-|....-+- -.+.|-+.|++ ++.--.|...
T Consensus 336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~ 415 (1200)
T KOG0964|consen 336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENI 415 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 7777777776543 222222111110 01111111111 2233446667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 690 LQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
||.||.+-+.-+....+++.....-.++..++
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r 447 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGR 447 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Confidence 77787777776666666666555555544443
No 103
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.51 E-value=40 Score=42.27 Aligned_cols=123 Identities=29% Similarity=0.356 Sum_probs=69.3
Q ss_pred HHHHHHhHHHH---HHHHHHhhhhhhh--------hhhhHHHHH--------------HHHHHhhhhhhhhhhhHHHHHh
Q 004861 589 LKTLRQEKEEV---ERLKKEKQILEEN--------TMKKLSEME--------------NALCKASGQVERANSAVRRLEV 643 (726)
Q Consensus 589 LksLR~EkEE~---erlkKeKq~lEe~--------T~KrLsEmE--------------nAL~kas~QlerAns~vrrLE~ 643 (726)
|..|-.||+|. +.|-|++.+||=. ++..|..+| -|+.++....++-.+.+.+||.
T Consensus 200 LreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~ 279 (1200)
T KOG0964|consen 200 LRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELEN 279 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555555555 4455677777732 445555544 3566677777888888999999
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
....||.|.|-++.+-.+-...-.-+-=+-+--...+-.=+.|+...-..|..-++||.+-++||..+
T Consensus 280 ~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I 347 (1200)
T KOG0964|consen 280 KLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKI 347 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988887755443322111111122222233334444444444444455555555555444
No 104
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.38 E-value=28 Score=41.62 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLE 642 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE 642 (726)
.+|++++..|..|..+...|.+..+.++
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888877776666665555444
No 105
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=85.33 E-value=17 Score=42.22 Aligned_cols=129 Identities=22% Similarity=0.248 Sum_probs=82.0
Q ss_pred HHhhhhHHHHHHH-HHhHHHHHH----------HHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHH
Q 004861 580 RRLSKDKAELKTL-RQEKEEVER----------LKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (726)
Q Consensus 580 rRL~kdk~ELksL-R~EkEE~er----------lkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~l 648 (726)
+++..|+-||.+. +|-..|..+ +...--.|-.-|.+.+.+|-.++..+-++ |....-.-
T Consensus 354 ~~fldeL~EL~aFL~qRl~El~~~~~~~l~~~~~~~ap~~lq~~t~~~i~~ml~~V~~ii~~----------Lt~~~~~~ 423 (507)
T PF05600_consen 354 NQFLDELLELEAFLKQRLYELSNEESSSLSFSQFQNAPSILQQQTAESIEEMLSAVEEIISQ----------LTNPRTQH 423 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHhhhccHHHHhcCHHHHHHHHHHHHHHHHH----------hcCHHHHH
Confidence 4677888888763 333333321 11111122223555555554444443333 33222222
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 649 RQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 649 R~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
=-.+-.++.-.-.-+.+.++-.+.+.|.+.+...++..+.-+++|+....-||..| ++++|++|+++|+-
T Consensus 424 L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l---~~~Tr~Lq~~iE~~ 493 (507)
T PF05600_consen 424 LFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDAL---VERTRELQKQIEAD 493 (507)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHH
Confidence 23444555555566777888888899999999999999999999999999988877 46799999999974
No 106
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=85.31 E-value=5.2 Score=43.03 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=54.3
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 004861 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENA 623 (726)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnA 623 (726)
++||++|-. +.++.++ ..+.+=|+.|.-|.++.|.+...++..+ ++++....+ .+| -+.|-+...|.
T Consensus 151 ~ekd~~i~~---~~~~~e~--d~rnq~l~~~i~~l~~~l~~~~~~~~~~-~~~~~~~~~------~~e-~~~r~~~lr~~ 217 (264)
T PF07246_consen 151 EEKDQLIKE---KTQEREN--DRRNQILSHEISNLTNELSNLRNDIDKF-QEREDEKIL------HEE-LEARESGLRNE 217 (264)
T ss_pred HHHHHHHHH---Hhhchhh--hhHHHHHHHHHHHhhhhHHHhhchhhhh-hhhhhHHHH------HHH-HHHhHhhhHHH
Confidence 556666655 5555555 6666777777777777777666665555 233332222 222 35555555566
Q ss_pred HHHhhhhhhhhhhhHHHHHhhhHH
Q 004861 624 LCKASGQVERANSAVRRLEVENTA 647 (726)
Q Consensus 624 L~kas~QlerAns~vrrLE~EnA~ 647 (726)
.+.-..++.+|....+++..++.-
T Consensus 218 ~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 218 SKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 666667777777777776665543
No 107
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.29 E-value=84 Score=36.86 Aligned_cols=162 Identities=18% Similarity=0.236 Sum_probs=94.1
Q ss_pred HHhHHHHHHHHHHHHhHHHHHH-HHHHHHHHhhhhHHHHHHHHHhHHHH---------------HHHHHHhhhhhh----
Q 004861 552 KLIPRVRELHNQLHEWTEWANQ-KVMQAARRLSKDKAELKTLRQEKEEV---------------ERLKKEKQILEE---- 611 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnq-KvmQaarRL~kdk~ELksLR~EkEE~---------------erlkKeKq~lEe---- 611 (726)
.|=.++.+++.++....+|... --.+|..-|.+-..++..|+.-.+++ +.|+.+-+-|.+
T Consensus 169 ~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~ 248 (569)
T PRK04778 169 ELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYH 248 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC
Confidence 4677899999999999999653 33444444444444444444444443 334444333332
Q ss_pred ----hhhhhHHHHHHHHHH-----hhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHh
Q 004861 612 ----NTMKKLSEMENALCK-----ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (726)
Q Consensus 612 ----~T~KrLsEmEnAL~k-----as~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qs 682 (726)
+--+++..|++.|.. ...+|+.|...+..++.++..|=.-||.... +-..|-+.-.+..+.+..
T Consensus 249 ~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~-------A~~~vek~~~~l~~~l~~ 321 (569)
T PRK04778 249 LDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVK-------ARKYVEKNSDTLPDFLEH 321 (569)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHH
Confidence 356788888888887 5677888888888888888776655554322 112223333334444455
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHh
Q 004861 683 WEKQKALFQEELVTEKRK----------VVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~K----------l~~l~qel~qak~~q~q~E~ 720 (726)
-+.|-..|..||..-++. +.+++++|..++...++++.
T Consensus 322 ~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~ 369 (569)
T PRK04778 322 AKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITE 369 (569)
T ss_pred HHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544 55555555555555544443
No 108
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=85.28 E-value=52 Score=34.44 Aligned_cols=144 Identities=25% Similarity=0.310 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHH---HHHHHHHHhhh
Q 004861 553 LIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLS---EMENALCKASG 629 (726)
Q Consensus 553 Lv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLs---EmEnAL~kas~ 629 (726)
|=.|++|.|.++- |-+.-+-.-++-|+.+|-+.+. .....+.|.+....|=- .-||.|.....
T Consensus 15 LKqQLke~q~E~~-----------~K~~Eiv~Lr~ql~e~~~~l~~---~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~ 80 (202)
T PF06818_consen 15 LKQQLKESQAEVN-----------QKDSEIVSLRAQLRELRAELRN---KESQIQELQDSLRTKQLELEVCENELQRKKN 80 (202)
T ss_pred HHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhHhHHHhHHHHHHHhC
Confidence 5567777777652 1122222233333333333222 22233444554444333 33566666666
Q ss_pred hhhhhhhhHHHHHhhhHHHHHHHHHH--------HHhHHHhHHH-------HHHHHHHHHHhHHHHHh-----HHHHHHH
Q 004861 630 QVERANSAVRRLEVENTALRQEMEAA--------KLRAAESAAS-------CQEVSKREKKTQMKFQS-----WEKQKAL 689 (726)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAa--------KL~A~ES~~s-------c~ev~krekk~lkk~qs-----WEkQK~l 689 (726)
+.+.=.-.+..||.|++.||.+...+ .+...+-+.. +..-++++-..|+.=.. =|.|..-
T Consensus 81 Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~ 160 (202)
T PF06818_consen 81 EAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSS 160 (202)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 66666667888899999999888776 2222222211 12223343333333222 2334444
Q ss_pred HHHHH---HHHHHHHHHHHHHHHH
Q 004861 690 FQEEL---VTEKRKVVQLLQELDQ 710 (726)
Q Consensus 690 LQEEL---a~eK~Kl~~l~qel~q 710 (726)
|..|- .+||+||-.-|++|.+
T Consensus 161 Fe~ER~~W~eEKekVi~YQkQLQ~ 184 (202)
T PF06818_consen 161 FEQERRTWQEEKEKVIRYQKQLQQ 184 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55553 3577777777777665
No 109
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=85.17 E-value=82 Score=39.10 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=69.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhH-HHHHHHHHHh-hhhhhhhh-hhHHHHHHH
Q 004861 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEK-EEVERLKKEK-QILEENTM-KKLSEMENA 623 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~Ek-EE~erlkKeK-q~lEe~T~-KrLsEmEnA 623 (726)
.|...+|---.++++..+.+|+-|-. +|++|+.+..-|=+|+ ||.+.+|+-. +.+.+.|- -+..
T Consensus 255 ~E~d~~lq~sak~ieE~m~qlk~kns--------~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkyl----- 321 (1265)
T KOG0976|consen 255 EEQDMDLQASAKEIEEKMRQLKAKNS--------VLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYL----- 321 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-----
Confidence 35555666667788888888888853 4666655544333322 2222222210 01111100 0111
Q ss_pred HHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh-----------------HHHhHHHHHHHHHHHHHhHHHHHhHHHH
Q 004861 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLR-----------------AAESAASCQEVSKREKKTQMKFQSWEKQ 686 (726)
Q Consensus 624 L~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~-----------------A~ES~~sc~ev~krekk~lkk~qsWEkQ 686 (726)
+..+-+|..+++.||.++--||+. |-.-+.+.+|+++-+...+.+|. ..
T Consensus 322 -----------h~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~---~l 387 (1265)
T KOG0976|consen 322 -----------HLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL---EL 387 (1265)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HH
Confidence 223345555555555555555544 34556666666665555443333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004861 687 KALFQEELVTEKRKVVQLLQE 707 (726)
Q Consensus 687 K~lLQEELa~eK~Kl~~l~qe 707 (726)
-+.+||-|...|.+|..+.+-
T Consensus 388 ~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 388 QAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHhhhhhhhc
Confidence 567788888888888776554
No 110
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.95 E-value=45 Score=42.68 Aligned_cols=145 Identities=13% Similarity=0.085 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHH
Q 004861 570 WANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (726)
Q Consensus 570 WAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR 649 (726)
=|-+++|++..+|-.-++|...+++-.-|+.+ ++-+--.--|.|+.+|+.-..++|..+++|+.=+-++|
T Consensus 1412 ~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~----------~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1412 GALLMAGDADTQLRSKLAEAEQTLSMVREAKL----------SASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVR 1481 (1758)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777666666665444433333311 12222223344555555555555555555554444444
Q ss_pred HHHHHHHH--------------------------------hHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q 004861 650 QEMEAAKL--------------------------------RAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE 697 (726)
Q Consensus 650 ~EmEAaKL--------------------------------~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~e 697 (726)
-=+++-+- .+++|..+--.|+-|-+-.+-+....+..-..-.++-...
T Consensus 1482 ~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v 1561 (1758)
T KOG0994|consen 1482 DFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDV 1561 (1758)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHH
Confidence 22211111 1233333444445555555555444444444444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 698 KRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 698 K~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
|.+...+++.|++|.+.|..++..++|
T Consensus 1562 ~~~ae~V~eaL~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1562 KGQAEDVVEALEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666777777778887777777766655
No 111
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=84.71 E-value=61 Score=34.75 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=24.8
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004861 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQA 578 (726)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQa 578 (726)
|...+..-+|..++.+-..++....+++..+--|.
T Consensus 92 d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ 126 (297)
T PF02841_consen 92 DEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQA 126 (297)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888888876655444
No 112
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=84.67 E-value=33 Score=37.70 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=30.2
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 670 SKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 670 ~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~ 714 (726)
.+|.+|.+.||+.=+.-.--|||-+..|..+|.+.+-++..++-+
T Consensus 392 errkqkeeeklk~e~qkikeleek~~eeedal~~all~~qeirl~ 436 (445)
T KOG2891|consen 392 ERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLNLQEIRLI 436 (445)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 356666777777655444457888888888887777666665543
No 113
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=84.53 E-value=8.7 Score=42.46 Aligned_cols=93 Identities=33% Similarity=0.486 Sum_probs=73.3
Q ss_pred HHhhhhHHHHHHHHHhHHHH-HHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh
Q 004861 580 RRLSKDKAELKTLRQEKEEV-ERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (726)
Q Consensus 580 rRL~kdk~ELksLR~EkEE~-erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (726)
||+++-+.||..+-.|||.. +|||-|.+.+|- -++.||.+|..|-+|.|+-.++
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~-------------------------~~~~l~~~~~~~~~~~~~~~~q 62 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQESFEK-------------------------KIRQLEEQNELIIKEREDLQQQ 62 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHhHHHHHHHHHHHHH
Confidence 67778888888888888876 467777777662 3677888999999999998754
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 659 AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 659 A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
-.-|||++. |.|.=|+.+..||..-.-+|.+|+....+|
T Consensus 63 ----yrecqell~-----------------lyq~ylseqq~kl~~s~~~l~~~~~~~q~v 101 (328)
T PF15369_consen 63 ----YRECQELLS-----------------LYQKYLSEQQEKLTMSLSELSAARMKEQQV 101 (328)
T ss_pred ----HHHHHHHHH-----------------HHHHHHHHHHHHHhcCHHHhhhhhhhhccC
Confidence 456999874 677778888899988888888888776664
No 114
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=84.52 E-value=48 Score=33.38 Aligned_cols=160 Identities=23% Similarity=0.216 Sum_probs=91.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 004861 546 RDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC 625 (726)
Q Consensus 546 KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ 625 (726)
-|+-..+.-..+..|+.+|+. -.=+.+++...-+.|+.+..||-.-=..-- ..|++ ..|.
T Consensus 22 ~D~~F~~~~~~~~~le~~Lk~-l~~~~~~l~~~~~~l~~~~~e~~~~~~~la----------~~E~~---------~~l~ 81 (236)
T PF09325_consen 22 PDEWFEEIKDYVDKLEEQLKK-LYKSLERLVKRRQELASALAEFGSSFSQLA----------KSEEE---------KSLS 81 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cccCC---------chhH
Confidence 366677777888888888887 455666777777777777776643211111 11222 1133
Q ss_pred HhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh-HHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH-------HH
Q 004861 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLR-AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV-------TE 697 (726)
Q Consensus 626 kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~-A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa-------~e 697 (726)
++-.++-.+...+..+..+.+.--...=..-|+ -.-...+..+++.+-.+.+..++..+.+-.+.++++. ..
T Consensus 82 ~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~ 161 (236)
T PF09325_consen 82 EALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNR 161 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 333333333333333322221110000011111 2345556667777777777777777777766666662 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 004861 698 KRKVVQLLQELDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 698 K~Kl~~l~qel~qak~~q~q~E~~w~q~ 725 (726)
..|+.++..++..++...++++.+|..+
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889988888888888877654
No 115
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.51 E-value=9.7 Score=38.69 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=56.5
Q ss_pred HhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH----HHH
Q 004861 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEK----RKV 701 (726)
Q Consensus 626 kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK----~Kl 701 (726)
+...++++.+..+.+++.++++++.+.+.+|-.-.++ ....+.|.+++.-+++...|+.||..-+ .+|
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3344555566666777777777777777776655555 3334478888899999999999998543 356
Q ss_pred HHHHHHHHHHHHHHH
Q 004861 702 VQLLQELDQAKALQE 716 (726)
Q Consensus 702 ~~l~qel~qak~~q~ 716 (726)
.++.+++..++...+
T Consensus 138 ~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 138 EKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655544
No 116
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.50 E-value=52 Score=33.84 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHh--------hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEV--------ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEK 685 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~--------EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEk 685 (726)
..+..++|+-|+.+..++-+.+..+++|.. |..+|-.+.+.+.-...++.. +++..++
T Consensus 81 q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~--------------ki~~Lek 146 (194)
T PF15619_consen 81 QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEK--------------KIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 345566677777777777777777777664 233333333333333333222 3333333
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 686 QK----ALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 686 QK----~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
|- ..++-+|+.|+.|+..++.++..+..-.+.+.
T Consensus 147 ~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 147 QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 23566777888888877777766554444433
No 117
>PRK10698 phage shock protein PspA; Provisional
Probab=84.39 E-value=26 Score=36.44 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHH-----HHHHHHHHHHhHHHHHhHHHHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS-----CQEVSKREKKTQMKFQSWEKQKAL 689 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s-----c~ev~krekk~lkk~qsWEkQK~l 689 (726)
-=+-|||.+|.++-..|-++-+.-+++|.+...+..+.+-=.-+|--.... -.+++.+.+....++...+.|..-
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~ 110 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTL 110 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999998888888888888888888777766655433333332221 245666677777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 690 LQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
.++-+..-+..+.+|+..+.+++..++.+=+|-
T Consensus 111 ~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 111 VDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877766553
No 118
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.09 E-value=46 Score=39.99 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=75.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhH------HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 004861 561 HNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEK------EEVERLKKEKQILEENTMKKLSEMENALCKASGQVERA 634 (726)
Q Consensus 561 q~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~Ek------EE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerA 634 (726)
..+...=.+|.++++-+.-.+|..=-.+|...|++. +|++-+-..-..| ..+|.+++..+...+...-.-
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l----~~ql~~l~~~~~~l~~~~~~~ 337 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNV----DNQLNELTFREAEISQLYKKD 337 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Confidence 333444467777777777777777777777776654 1221111111111 123333333333333444445
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 635 NSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 635 ns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~ 714 (726)
|-.|+.|..+.+.|+++++.. +..+..+...|.|-.-|+.|...-+.-...|.+..+++...
T Consensus 338 hP~v~~l~~~~~~L~~~~~~l------------------~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 338 HPTYRALLEKRQTLEQERKRL------------------NKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred CchHHHHHHHHHHHHHHHHHH------------------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777666665432 23345666777777778888888888877777777776444
Q ss_pred H
Q 004861 715 Q 715 (726)
Q Consensus 715 q 715 (726)
+
T Consensus 400 ~ 400 (726)
T PRK09841 400 K 400 (726)
T ss_pred h
Confidence 3
No 119
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=83.87 E-value=1.3e+02 Score=37.95 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~Kl~~l~qel~qak~~ 714 (726)
.+.+...+++++.+....+..+.+.|.+.+..
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 858 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIRQQLKQDADN 858 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554444444433
No 120
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.83 E-value=13 Score=38.46 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=13.1
Q ss_pred CCCcCcccCcCcccccCCCCc
Q 004861 525 CGYAGILSDDTSLEHLVPQDK 545 (726)
Q Consensus 525 ~~~~~i~~D~~~~~~~Vp~D~ 545 (726)
.+|..|-++ +.-.-||+.+.
T Consensus 65 ~~w~~Vr~~-~G~~GWV~~~~ 84 (206)
T PRK10884 65 TNYAQIRDS-KGRTAWIPLKQ 84 (206)
T ss_pred CCEEEEEeC-CCCEEeEEHHH
Confidence 467777655 34458998764
No 121
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.81 E-value=22 Score=36.01 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q 004861 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKR 699 (726)
Q Consensus 620 mEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~ 699 (726)
++.+|+....+|.++..++-+.-...-.+.++++.+.-.+.+--..-..+++++...|=+. +=.+|.-+++++...+.
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~--al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE--ALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555554444332 23344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 700 KVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 700 Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
-+.++...+.+.+....+++.+..
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~ 129 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLE 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555443
No 122
>PRK12704 phosphodiesterase; Provisional
Probab=83.76 E-value=97 Score=36.33 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWE 684 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWE 684 (726)
.++|...|+.|.+-..+||+-...+.+.|.+....+++++.-+-...+--..+.++.......|.+.-.+-
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56677777777777777777777776666666666666655555555555566666666666666654443
No 123
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=83.62 E-value=60 Score=33.86 Aligned_cols=125 Identities=26% Similarity=0.299 Sum_probs=70.4
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhh
Q 004861 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASG 629 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~ 629 (726)
+-.|..++..|+..+.+=.+=-.+..=.-+.-|.+++.+|+.. ++.=+..++..|...+|||.|+++.|...
T Consensus 94 l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~------~~~Er~~R~erE~~i~krl~e~~~~l~~~-- 165 (247)
T PF06705_consen 94 LDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEA------FENERNEREEREENILKRLEEEENRLQEK-- 165 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4445556666655555443333333333344455555554432 22233345555888999999999887654
Q ss_pred hhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHH
Q 004861 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (726)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQ 686 (726)
|+ ......|...+.|+.+++..+-.-......++-..-.|-..++.-...|+|
T Consensus 166 -i~---~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~ 218 (247)
T PF06705_consen 166 -IE---KEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQ 218 (247)
T ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 234456778888998888877655555555544444444444444444433
No 124
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=82.93 E-value=62 Score=35.71 Aligned_cols=27 Identities=41% Similarity=0.485 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHH----HHhhhhhhhh
Q 004861 587 AELKTLRQEKEEVERLK----KEKQILEENT 613 (726)
Q Consensus 587 ~ELksLR~EkEE~erlk----KeKq~lEe~T 613 (726)
.|-..||+|-||.---| |=||.+.+.+
T Consensus 285 ieterlrqeeeelnikk~e~~kikqe~ddkd 315 (445)
T KOG2891|consen 285 IETERLRQEEEELNIKKAEACKIKQEFDDKD 315 (445)
T ss_pred hhHHHHhhhHhhhhhhHHHhhchhhhcCccc
Confidence 45556777776643222 3467776665
No 125
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=82.85 E-value=20 Score=42.39 Aligned_cols=105 Identities=24% Similarity=0.168 Sum_probs=62.3
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHH----HHHHHHHHhHHHHHhHHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQ----EVSKREKKTQMKFQSWEKQKA 688 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~----ev~krekk~lkk~qsWEkQK~ 688 (726)
+++.|.|+=-+....+.|.+.-... .++.|.+.++.=-+-.+.+..+-...-. ++..+-.-.-++ ..|- |+-
T Consensus 489 ~~~al~el~~~~~~~~~~~~~~~~~--n~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~-q~e 564 (607)
T KOG0240|consen 489 VLTALEELAVNYDQKSEEKESKLSQ--NLKSELQSLQEPSEHQSKRITELLSELRKDLGEIGWKIGTSSEK-RLYI-QLE 564 (607)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhhhh--hhHHHHHhhhhcccchhHHHHHHHHHHHhhhccccccccCCccc-ceee-ehh
Confidence 5555666666666666666633222 2667777776655555555544332211 111111111111 3454 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 689 LFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 689 lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
.+|.|+.+ |+.+...++.+-+....|++++.+.
T Consensus 565 ~~~~~~~~---~~~~~~~~~~~~k~~~s~hs~~~~s 597 (607)
T KOG0240|consen 565 VLQSESNT---KMEQEEKELRPCKLLISQHSAKKKS 597 (607)
T ss_pred hhhhHHHH---HHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 89988865 6778888999999999999998764
No 126
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=82.65 E-value=0.42 Score=58.08 Aligned_cols=167 Identities=25% Similarity=0.336 Sum_probs=0.9
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHH-HHHHHhHHHHHHHHHHhhhhhhhh---hhhHHHHHHHHHHh
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAEL-KTLRQEKEEVERLKKEKQILEENT---MKKLSEMENALCKA 627 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~EL-ksLR~EkEE~erlkKeKq~lEe~T---~KrLsEmEnAL~ka 627 (726)
+|-.+|.+|+.+|-+=.+=+ .-++.-++|.-.+.+.| .-|++|++-.+.+.+.|+.||... .-||.|||.+-.+
T Consensus 662 ~le~~i~~l~~eleE~~~~~-~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~- 739 (859)
T PF01576_consen 662 KLEAEIQQLEEELEEEQSEA-EAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALK- 739 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 34455555555544332211 11222233333333333 347888899999999999999874 4589999986544
Q ss_pred hhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 628 SGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (726)
Q Consensus 628 s~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qe 707 (726)
.....|.+||+.+.+|-.+.|+-...-.+...+....=+|-|.....+.-=-++-.-+||.+..-..||..+.++
T Consensus 740 -----~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq 814 (859)
T PF01576_consen 740 -----GGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQ 814 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----ccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233477777777777778888777777777776666666655554333333334456777777777888888888
Q ss_pred HHHHHHHHHHHHhhhhcC
Q 004861 708 LDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 708 l~qak~~q~q~E~~w~q~ 725 (726)
++.|.....+..+++|.+
T Consensus 815 ~eeaEe~~~~~~~k~Rk~ 832 (859)
T PF01576_consen 815 LEEAEEEASRNLAKYRKL 832 (859)
T ss_dssp ----------------SS
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 888777777777766654
No 127
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.48 E-value=69 Score=37.33 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 686 QKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 686 QK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
+...|++++..-+.++.++-++|.++
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444
No 128
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.15 E-value=58 Score=41.05 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=93.1
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHH---HHH
Q 004861 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENA---LCK 626 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnA---L~k 626 (726)
+-+|-..++-|+.||.|-+| -..|--.-|-.-++|+..||+|-+|..-.++--..-=+.+--=-.-||.+ -+-
T Consensus 179 lAdle~kir~LrqElEEK~e----nll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFE----NLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence 34566677778888887773 34445555666678888899988877554331111000000000011111 122
Q ss_pred hhhhhhhhhhhHHHHHhhhHHHHHHHH--HHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004861 627 ASGQVERANSAVRRLEVENTALRQEME--AAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQL 704 (726)
Q Consensus 627 as~QlerAns~vrrLE~EnA~lR~EmE--AaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l 704 (726)
+.+.+|+-.+.|-.|+-.|+.|-.|.| -+.|+-.+.-.--.... .-+.-..++-..++.|..+.++|+++|
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tle-------seiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLE-------SEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChH-------HHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345566677788888888888865544 33333322211000000 011223344566788889999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004861 705 LQELDQAKALQEQLEVFF 722 (726)
Q Consensus 705 ~qel~qak~~q~q~E~~w 722 (726)
+.|-.+....+.|+-+.|
T Consensus 328 ~eEnstLq~q~eqL~~~~ 345 (1195)
T KOG4643|consen 328 HEENSTLQVQKEQLDGQM 345 (1195)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999888888887766
No 129
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.13 E-value=90 Score=35.97 Aligned_cols=59 Identities=27% Similarity=0.357 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhh
Q 004861 573 QKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVEN 645 (726)
Q Consensus 573 qKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~En 645 (726)
+++-+.-.++.+-..+|+.|..|...++. -|.+.++.|.+...+++..|.....|+++-
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~--------------ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEA--------------QLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554433 344555555555555555555555555444
No 130
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=81.95 E-value=80 Score=35.12 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRL 641 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrL 641 (726)
.++...+..+..+..|+++....+.+.
T Consensus 139 ~~i~~~~~~l~~~~~~~~~~~~l~~~~ 165 (421)
T TIGR03794 139 ETIGRLREELAALSREVGKQRGLLSRG 165 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555666655555544
No 131
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.63 E-value=11 Score=38.05 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=65.6
Q ss_pred hhhhHH-HHHhhhHHHHHHHHHHHH-hHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 634 ANSAVR-RLEVENTALRQEMEAAKL-RAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 634 Ans~vr-rLE~EnA~lR~EmEAaKL-~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
=|+.|| +.+.++..-+++..--|. ...=+...|...+..-+...-..+.++.+...|++|++.-+.++.+|+.+++..
T Consensus 51 WNs~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 51 WNAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666 356666665555554442 134456777777777777777788899999999999999999999999999998
Q ss_pred HHHHHHHHhhh
Q 004861 712 KALQEQLEVFF 722 (726)
Q Consensus 712 k~~q~q~E~~w 722 (726)
++....+|-..
T Consensus 131 ~~~~~~~~eDY 141 (161)
T TIGR02894 131 RQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHH
Confidence 88777776543
No 132
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=81.21 E-value=40 Score=32.16 Aligned_cols=96 Identities=23% Similarity=0.356 Sum_probs=65.0
Q ss_pred hhhhhhhHHHHHHHHHHhhhhh------hhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhH
Q 004861 610 EENTMKKLSEMENALCKASGQV------ERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW 683 (726)
Q Consensus 610 Ee~T~KrLsEmEnAL~kas~Ql------erAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsW 683 (726)
+|--.|||...=..+.+..... +.......++..+.+.+.-.|.-+++. .++-++| .+.|
T Consensus 14 ~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~--------~~~n~~e------~e~Y 79 (139)
T PF05615_consen 14 DDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLI--------LEMNKRE------RENY 79 (139)
T ss_pred CchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH------HHHH
Confidence 5555555555555555555433 555566666666665555544433332 2233343 5789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 684 EkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
+..+.-+.++|...|..|.+|..+|..|+...++-+
T Consensus 80 ~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 80 EQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877654
No 133
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.16 E-value=82 Score=33.71 Aligned_cols=33 Identities=27% Similarity=0.213 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHh
Q 004861 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKT 676 (726)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~ 676 (726)
|...|-.||..||-+...--....++-.+.++.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666655555444444444444333
No 134
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=80.50 E-value=88 Score=40.01 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=58.2
Q ss_pred hhhhhhHHHHHHHHHHh-hhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhH-HHHHhHHHHHH
Q 004861 611 ENTMKKLSEMENALCKA-SGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ-MKFQSWEKQKA 688 (726)
Q Consensus 611 e~T~KrLsEmEnAL~ka-s~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~l-kk~qsWEkQK~ 688 (726)
..+++||.|.++.|... ...-.-..+.-..|++|.+.+.++.+...+.. .|...-+|+.+.....+ ++.+.-|.+-.
T Consensus 147 ~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l-~s~~~~~~L~~~q~dl~~~~~~~l~~~~~ 225 (1109)
T PRK10929 147 TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQ-LSANNRQELARLRSELAKKRSQQLDAYLQ 225 (1109)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888999999888662 12222333344556666666666666655543 37778888877665443 34555577778
Q ss_pred HHHHHHHHHHHHHHH
Q 004861 689 LFQEELVTEKRKVVQ 703 (726)
Q Consensus 689 lLQEELa~eK~Kl~~ 703 (726)
.||+.|...+.+-++
T Consensus 226 ~Lq~~in~kR~~~se 240 (1109)
T PRK10929 226 ALRNQLNSQRQREAE 240 (1109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888876655443
No 135
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=80.44 E-value=95 Score=36.36 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=64.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 004861 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (726)
...|-+|..++.+++.+++..-+=-...++....+........+.|..|..++-. . ..++....+|.+....+..
T Consensus 13 ~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~--~---~~~~~i~~~l~~a~~e~~~ 87 (593)
T PF06248_consen 13 RKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQ--S---EIENEIQPQLRDAAEELQE 87 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--h---hccchhHHHHHHHHHHHHH
Confidence 5678899999999999998542222223333333333335556666666644422 1 2456677777777777777
Q ss_pred hhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 627 ASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 627 as~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
...|++..+..+.-|+ ...++...++...
T Consensus 88 L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 88 LKRELEENEQLLEVLE-QLQEIDELLEEVE 116 (593)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 7778887777766666 4555555554443
No 136
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.40 E-value=68 Score=38.02 Aligned_cols=80 Identities=24% Similarity=0.371 Sum_probs=40.7
Q ss_pred HHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhh-------hHHHH
Q 004861 577 QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVE-------NTALR 649 (726)
Q Consensus 577 QaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~E-------nA~lR 649 (726)
++++..++-..++..|+-|.++....=.+++-.=..+++++.+.+++|+...+++.-+++....||.| |+-|+
T Consensus 103 e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 103 ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34444444445555555555544332222222233456666666666666666666666655555544 44444
Q ss_pred HHHHHHH
Q 004861 650 QEMEAAK 656 (726)
Q Consensus 650 ~EmEAaK 656 (726)
.+...+|
T Consensus 183 ~~l~~~r 189 (546)
T KOG0977|consen 183 EELARAR 189 (546)
T ss_pred HHHHHHH
Confidence 4444444
No 137
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.91 E-value=2e+02 Score=37.47 Aligned_cols=89 Identities=22% Similarity=0.254 Sum_probs=40.0
Q ss_pred HHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh--HHHhHH--HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 004861 625 CKASGQVERANSAVRRLEVENTALRQEMEAAKLR--AAESAA--SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (726)
Q Consensus 625 ~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~--A~ES~~--sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~K 700 (726)
..+..+++++...+...+.+.+.+..+...+..+ ..+-.. -..++-.+-.....++..-.++..-+..++.+-+.+
T Consensus 878 ~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~ 957 (1353)
T TIGR02680 878 AEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEA 957 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555554322 222111 144444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 004861 701 VVQLLQELDQAKA 713 (726)
Q Consensus 701 l~~l~qel~qak~ 713 (726)
+..+.+++.++..
T Consensus 958 ~~~a~~~~~~a~~ 970 (1353)
T TIGR02680 958 RGRAEEKRAEADA 970 (1353)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
No 138
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=79.81 E-value=76 Score=33.90 Aligned_cols=50 Identities=22% Similarity=0.360 Sum_probs=27.6
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 673 EKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 673 ekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
..+...+|+.|+..|..-+++-. ++.+ ...++..+...+.+++.|..|..
T Consensus 179 ~e~a~~~~q~W~~kK~~e~~~~r-~~~~-~~~~~~~~e~~eRk~~ae~A~~~ 228 (264)
T PF13904_consen 179 QEEAKQRYQEWERKKKEEQQQKR-EEER-EKEQQKQQEEQERKEQAEEAFQK 228 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566799999999876443322 2222 12223333344555666777754
No 139
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=79.67 E-value=1.1e+02 Score=34.09 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=13.9
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKD 585 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kd 585 (726)
+|-.|+.++. ++.|+. ++||..++-..|...
T Consensus 5 ~~~~q~a~~~--lk~~~~-~~qk~l~~~~~l~~~ 35 (332)
T TIGR01541 5 LLTQQIADRK--LKKLNT-ADEKSLQSRSDEIIA 35 (332)
T ss_pred HHHHHHHHHH--HhhhhH-HHHHHHHHHHHHHHH
Confidence 3444444444 344443 445554444444443
No 140
>PF13166 AAA_13: AAA domain
Probab=79.58 E-value=1.4e+02 Score=35.32 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 621 EnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
...+......++..|+.++....+...+..+.+.++
T Consensus 362 ~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~ 397 (712)
T PF13166_consen 362 NEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELK 397 (712)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666655555555555444
No 141
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.39 E-value=1.5e+02 Score=35.62 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004861 568 TEWANQKVMQAARRLSKDKAELKTLRQ 594 (726)
Q Consensus 568 tdWAnqKvmQaarRL~kdk~ELksLR~ 594 (726)
.+|=++++-+.-++|..--.+|...|+
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554444444444443
No 142
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=79.34 E-value=1e+02 Score=33.64 Aligned_cols=134 Identities=16% Similarity=0.248 Sum_probs=81.6
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhh-------hhhh
Q 004861 565 HEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVER-------ANSA 637 (726)
Q Consensus 565 qewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Qler-------Ans~ 637 (726)
..-.+|.++.+-++-.+|..-...|...|.+.--+. ...+ -.....-+++++..+-.+..|+.. .|-.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d-~~~~----~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD-PKAQ----SSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 345578888888888888888888888777652221 0000 001233455555555555555543 3778
Q ss_pred HHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
|+.|+.+.+.|++++.+..-+...+.. ..+-.=..|-.-|+-|...-+.....+.+.+++++....
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i~~~~~-------------~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~ 309 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQLSGGLG-------------DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEAD 309 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCC-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988664333222211 012222235557777888888888888888887774433
No 143
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.19 E-value=95 Score=33.25 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=20.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~ 714 (726)
.+..-......|+++|...+.++..+.+++..+++.
T Consensus 111 el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666666555555443
No 144
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=79.14 E-value=52 Score=41.61 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=6.9
Q ss_pred cccCCCCchhH
Q 004861 538 EHLVPQDKRDE 548 (726)
Q Consensus 538 ~~~Vp~D~KDE 548 (726)
+.|-++..|++
T Consensus 424 g~~g~r~eke~ 434 (1021)
T PTZ00266 424 GHYGGRVDKDH 434 (1021)
T ss_pred CccccccchhH
Confidence 45666666665
No 145
>PF15456 Uds1: Up-regulated During Septation
Probab=78.93 E-value=10 Score=36.46 Aligned_cols=43 Identities=35% Similarity=0.424 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhhhhh---hhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 004861 596 KEEVERLKKEKQILEEN---TMKKLSEMENALCKASGQVERANSAVR 639 (726)
Q Consensus 596 kEE~erlkKeKq~lEe~---T~KrLsEmEnAL~kas~QlerAns~vr 639 (726)
.||++.||||-+.|+.- ++++|. +|..++.|-.-+-+.+..-.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~ 66 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSS 66 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc
Confidence 48999999999999854 677776 88888888776666655444
No 146
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.70 E-value=45 Score=36.61 Aligned_cols=6 Identities=50% Similarity=0.589 Sum_probs=2.3
Q ss_pred cccccc
Q 004861 409 KKLKSV 414 (726)
Q Consensus 409 kklk~~ 414 (726)
+-|++.
T Consensus 73 ~EL~~~ 78 (312)
T smart00787 73 KELKKY 78 (312)
T ss_pred HHHHHH
Confidence 344333
No 147
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.25 E-value=1.5e+02 Score=35.16 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHH
Q 004861 573 QKVMQAARRLSKDKAELKTLRQ 594 (726)
Q Consensus 573 qKvmQaarRL~kdk~ELksLR~ 594 (726)
..+.+...++.+-..||..|.+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~ 412 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDK 412 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 148
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=78.24 E-value=90 Score=32.43 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=7.5
Q ss_pred chhHHHHHHhHHHHHHH
Q 004861 545 KRDEIILKLIPRVRELH 561 (726)
Q Consensus 545 ~KDEmilkLv~rv~eLq 561 (726)
+|++.|.+|=.+...-.
T Consensus 15 e~~~~i~~L~~q~~~~~ 31 (206)
T PF14988_consen 15 EKEKKIEKLWKQYIQQL 31 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555444443333
No 149
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=77.91 E-value=48 Score=35.72 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=11.1
Q ss_pred HHhhhHHHHHHHHHHHHhHHH
Q 004861 641 LEVENTALRQEMEAAKLRAAE 661 (726)
Q Consensus 641 LE~EnA~lR~EmEAaKL~A~E 661 (726)
|-.+.+--+.++|.++....+
T Consensus 143 L~~~g~vS~~~~~~a~~~~~~ 163 (346)
T PRK10476 143 LLAKGYVSAQQVDQARTAQRD 163 (346)
T ss_pred HHHCCCcCHHHHHHHHHHHHH
Confidence 334555556666666554333
No 150
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.79 E-value=37 Score=34.81 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (726)
-.+|.|++.......++.+...+.+.+|+.+...|..+.+.++++=...+
T Consensus 137 e~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 137 EMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788887778888888888888888888888888888877654443
No 151
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.70 E-value=1.3e+02 Score=34.11 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 687 KALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (726)
Q Consensus 687 K~lLQEELa~eK~Kl~~l~qel~qak~~q~q 717 (726)
..-.+++|.+-+..|..++.+|++++...+.
T Consensus 286 ~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 286 LAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455666666677777777777766655443
No 152
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.20 E-value=64 Score=35.44 Aligned_cols=118 Identities=30% Similarity=0.420 Sum_probs=80.6
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHh
Q 004861 564 LHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEV 643 (726)
Q Consensus 564 lqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~ 643 (726)
+.||+|=-.-||+|-..-|...+.- ||||+|-- -=-|.-+|-||.|....+|-..+-+--|.-
T Consensus 5 ~eEWKeGL~~~aLqKIqelE~Qldk-------------LkKE~qQr----QfQleSlEAaLqKQKqK~e~ek~e~s~LkR 67 (307)
T PF10481_consen 5 VEEWKEGLPTRALQKIQELEQQLDK-------------LKKERQQR----QFQLESLEAALQKQKQKVEEEKNEYSALKR 67 (307)
T ss_pred HhHHhccCCHHHHHHHHHHHHHHHH-------------HHHHHHHH----HHhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4688888888998888777655443 33333321 013566788888887777655544444444
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
||--| ..+|-.+-|+.+|..-.++.=|.|-..|.--|...|.-|..|.++|..-|
T Consensus 68 Enq~l--------------~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 68 ENQSL--------------MESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred hhhhH--------------HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 45788888888888888888888888888888888888877777765533
No 153
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.58 E-value=12 Score=32.74 Aligned_cols=52 Identities=35% Similarity=0.457 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 574 KVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 574 KvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
+.=+++|++++-..++|+||.|++.+. .||-.|-....+|-.|+..+++|.+
T Consensus 13 rLd~~~rk~~~~~~~~k~L~~ERd~~~----------------------------~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 13 RLDSLTRKNSVHEIENKRLRRERDSAE----------------------------RQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999999999998662 2344455566667777777777643
No 154
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.56 E-value=2.5e+02 Score=36.62 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004861 555 PRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLR 593 (726)
Q Consensus 555 ~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR 593 (726)
...++|=.++++.|.=|-.++--|+.+|++--+-+..|+
T Consensus 1594 ~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1594 RLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666665555555555444444443
No 155
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.50 E-value=1.3e+02 Score=33.39 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004861 567 WTEWANQKVMQAARRLSKDKAELKTLRQE 595 (726)
Q Consensus 567 wtdWAnqKvmQaarRL~kdk~ELksLR~E 595 (726)
-.+|..+++-++-.+|..--..|...|.+
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665555555555544
No 156
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.38 E-value=37 Score=42.78 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=61.6
Q ss_pred hhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
.+....+-+-.||+.++-++.+|++.|++-.+-. .-++..+.+-..+|.+|...+++|-....++.
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~--------------~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~ 742 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNE--------------LELQRTESEIDEFGPEISEIKRKLQNREGEMK 742 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Confidence 5555556777899999999999999996533221 24677788888899999999999888888888
Q ss_pred HHHHHHHHHHhhh
Q 004861 710 QAKALQEQLEVFF 722 (726)
Q Consensus 710 qak~~q~q~E~~w 722 (726)
..+..-+++|.+.
T Consensus 743 ~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 743 ELEERMNKVEDRI 755 (1141)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
No 157
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=76.25 E-value=2e+02 Score=35.34 Aligned_cols=142 Identities=23% Similarity=0.265 Sum_probs=89.7
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 004861 563 QLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLE 642 (726)
Q Consensus 563 qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE 642 (726)
+|-+-|.--|.|=|| ..-|.++++|=..|--|+.-.++...+-|.-|..--+-|.-.|..+.---.||--+-..-+..-
T Consensus 392 eleEmtk~k~~ke~e-leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ys 470 (786)
T PF05483_consen 392 ELEEMTKQKNNKEVE-LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYS 470 (786)
T ss_pred HHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHH
Confidence 334445555555555 3445555555555555555555554444444444455566667777777777777777778888
Q ss_pred hhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 643 VENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 643 ~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~ 705 (726)
..+.+|+.|.|.-||.-.|=..+|..++--.+.-...+..+--..-++|++|..-|.+--.+.
T Consensus 471 kQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~ 533 (786)
T PF05483_consen 471 KQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKML 533 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988888877655444444555555555566666666555444433
No 158
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=76.04 E-value=85 Score=38.47 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=22.9
Q ss_pred hhhHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004861 203 LPQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (726)
Q Consensus 203 L~rle~RSL~GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am 247 (726)
..+.+.+.|..|...+..+.+.|-. +.. .++.+|+..|.+.
T Consensus 243 ~~~~~~~il~~l~~~i~~~~~~l~~---~~~-~l~~lD~l~a~a~ 283 (782)
T PRK00409 243 EEQEIERILKELSAKVAKNLDFLKF---LNK-IFDELDFIFARAR 283 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHH
Confidence 3445667777777777776654321 111 2345666666554
No 159
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=75.07 E-value=1.7e+02 Score=36.05 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004861 700 KVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 700 Kl~~l~qel~qak~~q~q~E 719 (726)
++.+++..++-.++.+.+.|
T Consensus 772 ~ve~~~k~~e~~~~~~~~le 791 (961)
T KOG4673|consen 772 HVELIQKDLEREKASRLDLE 791 (961)
T ss_pred HHHHHHHHhhhCHHHHhhcc
Confidence 33344444444444444444
No 160
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.98 E-value=1.6e+02 Score=37.52 Aligned_cols=12 Identities=17% Similarity=0.642 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhh
Q 004861 138 DAIFKSAIKKIV 149 (726)
Q Consensus 138 h~fY~~ALarLP 149 (726)
..+|.+|+.-+.
T Consensus 110 ~d~Y~~~v~p~i 121 (1041)
T KOG0243|consen 110 EDLYDQAVSPII 121 (1041)
T ss_pred HHHHHHHHHHHH
Confidence 357888887654
No 161
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.48 E-value=0.99 Score=53.57 Aligned_cols=99 Identities=27% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhHHH-HHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHH
Q 004861 570 WANQKVMQAARRLSKDKAELKTLRQEKEE-VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (726)
Q Consensus 570 WAnqKvmQaarRL~kdk~ELksLR~EkEE-~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~l 648 (726)
+..++.-.+...|.....++..++...|+ ..+|+.|+..+.....-..+.+.+.+.....+++.+...+..|+.+..++
T Consensus 118 ~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l 197 (722)
T PF05557_consen 118 QLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEEL 197 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555443 33455566555555555555666666666666677777777777777777
Q ss_pred HHHHHHHHHhHHHhHHHHHH
Q 004861 649 RQEMEAAKLRAAESAASCQE 668 (726)
Q Consensus 649 R~EmEAaKL~A~ES~~sc~e 668 (726)
+.+++-.+-...|....+++
T Consensus 198 ~~~le~~~~~~~e~e~~~~~ 217 (722)
T PF05557_consen 198 KEQLEELQSELQEAEQQLQE 217 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77776655554444443333
No 162
>PRK11519 tyrosine kinase; Provisional
Probab=74.43 E-value=1.5e+02 Score=35.82 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHhH
Q 004861 566 EWTEWANQKVMQAARRLSKDKAELKTLRQEK 596 (726)
Q Consensus 566 ewtdWAnqKvmQaarRL~kdk~ELksLR~Ek 596 (726)
.=.+|-++++-+.-.+|..--..|...|++.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3446777766666666666555565555543
No 163
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=74.08 E-value=61 Score=39.83 Aligned_cols=63 Identities=40% Similarity=0.519 Sum_probs=44.7
Q ss_pred HHHHHHHHHhHH--HHHHHHHHhhhhhhhhhhhHHHHHHHH-------HHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH-
Q 004861 586 KAELKTLRQEKE--EVERLKKEKQILEENTMKKLSEMENAL-------CKASGQVERANSAVRRLEVENTALRQEMEAA- 655 (726)
Q Consensus 586 k~ELksLR~EkE--E~erlkKeKq~lEe~T~KrLsEmEnAL-------~kas~QlerAns~vrrLE~EnA~lR~EmEAa- 655 (726)
+-|||+|=.|.| |++|| ++|+|.-+ ..+.-|+|-|=| ++-|..|||+||+.+-..
T Consensus 343 LgELkaLVaeq~DsE~qRL--------------itEvE~cislLPav~g~tniq~EIALA-~QplrsENaqLrRrLriln 407 (861)
T PF15254_consen 343 LGELKALVAEQEDSEVQRL--------------ITEVEACISLLPAVSGSTNIQVEIALA-MQPLRSENAQLRRRLRILN 407 (861)
T ss_pred HHHHHHHHhccchHHHHHH--------------HHHHHHHHHhhhhhhccccchhhhHhh-hhhhhhhhHHHHHHHHHHH
Confidence 457888766553 56666 67777765 467779998876 999999999999876653
Q ss_pred -HHhHHHhH
Q 004861 656 -KLRAAESA 663 (726)
Q Consensus 656 -KL~A~ES~ 663 (726)
+|+..|.+
T Consensus 408 qqlreqe~~ 416 (861)
T PF15254_consen 408 QQLREQEKA 416 (861)
T ss_pred HHHHHHHhh
Confidence 34444433
No 164
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.95 E-value=1.8e+02 Score=33.86 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=45.1
Q ss_pred HhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 626 kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~ 705 (726)
-|+-|+|.-+..+|-||.||.+||-..---| ..|-++..-.+++...|..---|-+-.|++-...-.+|-+.|
T Consensus 294 easle~Enlqmr~qqleeentelRs~~arlk-------sl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq 366 (502)
T KOG0982|consen 294 EASLEKENLQMRDQQLEEENTELRSLIARLK-------SLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQ 366 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888899999999999997643322 234444444445555555555555555554444444444444
Q ss_pred HHHH
Q 004861 706 QELD 709 (726)
Q Consensus 706 qel~ 709 (726)
++-.
T Consensus 367 ~eke 370 (502)
T KOG0982|consen 367 EEKE 370 (502)
T ss_pred HhhH
Confidence 4433
No 165
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=73.79 E-value=2.3e+02 Score=34.87 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=10.2
Q ss_pred hhhhhhhhhHHHHHhhhHHHHHH
Q 004861 629 GQVERANSAVRRLEVENTALRQE 651 (726)
Q Consensus 629 ~QlerAns~vrrLE~EnA~lR~E 651 (726)
.||+--+-.+-.|.-+|-.|++.
T Consensus 601 KqvEnk~K~ieeLqqeNk~LKKk 623 (786)
T PF05483_consen 601 KQVENKNKNIEELQQENKALKKK 623 (786)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 166
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=73.31 E-value=63 Score=28.24 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=8.8
Q ss_pred hhhHHHHHhhhHHHHHHHHHHH
Q 004861 635 NSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 635 ns~vrrLE~EnA~lR~EmEAaK 656 (726)
+.-+..|+..+..++.+.+.++
T Consensus 51 ~~~~~~l~~~i~~~~~~~~~~~ 72 (123)
T PF02050_consen 51 QRYISALEQAIQQQQQELERLE 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 167
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.05 E-value=1.6e+02 Score=32.80 Aligned_cols=99 Identities=25% Similarity=0.348 Sum_probs=55.9
Q ss_pred HHHHHHhHHHH-HHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhh-hhHHHHHhhhHHHHHHHHHHHHhHHHhHHHH
Q 004861 589 LKTLRQEKEEV-ERLKKEKQILEENTMKKLSEMENALCKASGQVERAN-SAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (726)
Q Consensus 589 LksLR~EkEE~-erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAn-s~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc 666 (726)
|..|.+|||.. -.+.+|-..|=..=++||..+-..-...-++|++=. .-|-+|-..+..|++|+.+ -..+
T Consensus 86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~--------~q~~ 157 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA--------KQEE 157 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hHHH
Confidence 44455666655 355555555555567777766555555555555422 3355565555555555422 1133
Q ss_pred HHHHHHHHH----------------hHHHHHhHHHHHHHHHHHHH
Q 004861 667 QEVSKREKK----------------TQMKFQSWEKQKALFQEELV 695 (726)
Q Consensus 667 ~ev~krekk----------------~lkk~qsWEkQK~lLQEELa 695 (726)
.+-++|||- ..|+.--.+..|..||+.|.
T Consensus 158 le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 158 LERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444443 23566677888888888887
No 168
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=72.83 E-value=34 Score=37.99 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHH
Q 004861 645 NTALRQEMEAAK 656 (726)
Q Consensus 645 nA~lR~EmEAaK 656 (726)
.+--+.|+|.++
T Consensus 153 g~iS~~~ld~a~ 164 (390)
T PRK15136 153 NLIGREELQHAR 164 (390)
T ss_pred CCcCHHHHHHHH
Confidence 333344444444
No 169
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.78 E-value=1.9e+02 Score=33.59 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=18.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
+-...-++..+||||..-...|.++.-|+.+.
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~ 307 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDL 307 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777766666665555555443
No 170
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=72.63 E-value=2e+02 Score=33.82 Aligned_cols=141 Identities=20% Similarity=0.259 Sum_probs=85.1
Q ss_pred HHhHHHHHHHHHHHHhHHHHHH-HHHHHHHHhhhhHHHHHHHHHhHHHH---------------HHHHHHhhhhhh----
Q 004861 552 KLIPRVRELHNQLHEWTEWANQ-KVMQAARRLSKDKAELKTLRQEKEEV---------------ERLKKEKQILEE---- 611 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnq-KvmQaarRL~kdk~ELksLR~EkEE~---------------erlkKeKq~lEe---- 611 (726)
.|-.++.+++.++.+..+|... --.+|..=|.+=..++..|+...+.+ +.|+.+-+.|++
T Consensus 165 ~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~ 244 (560)
T PF06160_consen 165 ELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYY 244 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC
Confidence 4667888889888888888776 55555555555555666665555443 233333333332
Q ss_pred ----hhhhhHHHHHHHHHHhh-----hhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHh
Q 004861 612 ----NTMKKLSEMENALCKAS-----GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (726)
Q Consensus 612 ----~T~KrLsEmEnAL~kas-----~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qs 682 (726)
+=.+++.+|+..|..+. ++++.|...+..++.++..|-.-||.- +.+-..|-+.-......+..
T Consensus 245 l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E-------~~Ak~~V~~~~~~l~~~l~~ 317 (560)
T PF06160_consen 245 LEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKE-------VEAKKYVEKNLKELYEYLEH 317 (560)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHH
Confidence 24556666666666654 455666666777776666655444431 22334455555566667777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004861 683 WEKQKALFQEELVTEKR 699 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~ 699 (726)
-..|-..|..|+..-++
T Consensus 318 ~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 318 AKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777765444
No 171
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.25 E-value=2e+02 Score=33.50 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=25.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHH
Q 004861 559 ELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKE 597 (726)
Q Consensus 559 eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkE 597 (726)
.+-+++.+--+||++|--|-+-+.-|++..+..=+.+.+
T Consensus 39 ~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k 77 (438)
T COG4487 39 RILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQK 77 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999877776666555555544444443
No 172
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.23 E-value=52 Score=34.81 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHH----------HHHHHHHhhhhhhhhhhhHHHHH
Q 004861 573 QKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSE----------MENALCKASGQVERANSAVRRLE 642 (726)
Q Consensus 573 qKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsE----------mEnAL~kas~QlerAns~vrrLE 642 (726)
.|+.+..+....=+.|+..++.|--=.+.+++|+..|...=|..+.| ||+-|..+..+-++....+++|.
T Consensus 8 ~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 8 NKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666666666666666666666655544433 45555555555555555555555
Q ss_pred hhhHHHHHHH
Q 004861 643 VENTALRQEM 652 (726)
Q Consensus 643 ~EnA~lR~Em 652 (726)
.|..-|+-|.
T Consensus 88 eey~~Lk~~i 97 (230)
T PF10146_consen 88 EEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHH
Confidence 5444444443
No 173
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=72.12 E-value=79 Score=31.57 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHhH
Q 004861 639 RRLEVENTALRQEMEAAKLRAAESA 663 (726)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES~ 663 (726)
.|++.+++.+|.|+|.+|..--...
T Consensus 134 ~ki~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998765543
No 174
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.10 E-value=56 Score=35.78 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=13.1
Q ss_pred hhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 631 VERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 631 lerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
++.....++.|+.|..++.+|.+...
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE 70 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELE 70 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555443
No 175
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.75 E-value=1.1e+02 Score=30.34 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL 657 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL 657 (726)
|..+|++-|+.+-..-|.-.--|..||.+......+.+.+.+
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~ 45 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLIL 45 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444444444444444444444444444444444444443
No 176
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=71.54 E-value=25 Score=31.59 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=36.6
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHH-HHHhhhHHHHHHHHHH
Q 004861 605 EKQILEENTMKKLSEMENALCKASGQVERANSAVR-RLEVENTALRQEMEAA 655 (726)
Q Consensus 605 eKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vr-rLE~EnA~lR~EmEAa 655 (726)
.+..+|-.---.++||+ .|+++--+||+++..++ ..|.|++.||+|+|+-
T Consensus 26 ~~~e~e~ki~~Qi~Em~-~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQ-QIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444544555677775 57777788888887764 7899999999999874
No 177
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=71.37 E-value=49 Score=35.01 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=31.3
Q ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH---hhhHHHHHHHHHHHH
Q 004861 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLE---VENTALRQEMEAAKL 657 (726)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE---~EnA~lR~EmEAaKL 657 (726)
.|..-.+.|..++.+....+.-.+..+ ..+...+..+..+..+++.|.....|.+ .+++--+.|++.++.
T Consensus 81 ~l~~a~a~l~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~ 153 (334)
T TIGR00998 81 ALAKAEANLAALVRQTKQLEITVQQLQ-------AKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARK 153 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 444445555555555544433221111 1222333334444444444444444333 244555566666665
Q ss_pred hH
Q 004861 658 RA 659 (726)
Q Consensus 658 ~A 659 (726)
..
T Consensus 154 ~~ 155 (334)
T TIGR00998 154 AL 155 (334)
T ss_pred HH
Confidence 43
No 178
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=71.32 E-value=2.6e+02 Score=34.41 Aligned_cols=183 Identities=20% Similarity=0.201 Sum_probs=102.6
Q ss_pred cCcccCcCcccccCCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhh
Q 004861 528 AGILSDDTSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQ 607 (726)
Q Consensus 528 ~~i~~D~~~~~~~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq 607 (726)
..+.+| ++ .-+|.+.+|++=.++..-+-.|-.++..|.+=...+.- +.+.|..+. ..+++..++++-|
T Consensus 376 ~~~~le--~~-k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~----k~~~d~~~r-----~~~~~~~~~e~Lq 443 (698)
T KOG0978|consen 376 NELRLE--ML-KSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIR----KQALDDAER-----QIRQVEELSEELQ 443 (698)
T ss_pred HHHHHH--HH-hCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHH-----hHHHHHHHHHHHH
Confidence 345555 44 56788888888888888888888888877654433322 122222221 0112222233333
Q ss_pred hhhhhhhhhHHH----------HHHHHHHhhhh--------------hhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhH
Q 004861 608 ILEENTMKKLSE----------MENALCKASGQ--------------VERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (726)
Q Consensus 608 ~lEe~T~KrLsE----------mEnAL~kas~Q--------------lerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (726)
.++++..-=|+| |+--+.+-.-| -+++|..+..|.-+...+..++ +.|.++..+
T Consensus 444 k~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i--~~l~~~~~~ 521 (698)
T KOG0978|consen 444 KKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQI--LTLKASVDK 521 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 333333322222 33333333333 3556666666666655554443 444444333
Q ss_pred H--HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 664 A--SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 664 ~--sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
. -...+=+++..+....+.-+++.-.++.=|...|.++..+-+.+++.+...+..+++..|
T Consensus 522 ~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~ 584 (698)
T KOG0978|consen 522 LELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQ 584 (698)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223344556666667777777777888888888888888877777777777766666554
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.30 E-value=2.3e+02 Score=33.79 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=3.9
Q ss_pred HHHHHHHHhhh
Q 004861 619 EMENALCKASG 629 (726)
Q Consensus 619 EmEnAL~kas~ 629 (726)
++|..|.....
T Consensus 402 ~~e~el~~l~~ 412 (650)
T TIGR03185 402 ELEEELAEVDK 412 (650)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 180
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=71.27 E-value=2.1e+02 Score=33.51 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKR 672 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~kr 672 (726)
++.+.+..+.....++........+++.++++++.++|+....+.|--+...+..++
T Consensus 54 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~ 110 (475)
T PRK10361 54 QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQR 110 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667777777777788888888877777777776665555444333
No 181
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=71.17 E-value=76 Score=28.24 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhH
Q 004861 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW 683 (726)
Q Consensus 618 sEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsW 683 (726)
.++.+.|.......+.....+..|+.-...+....+.++-.-......+.+++.+.++.|..-..+
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777788888888888888888888888888888887777666544433
No 182
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=70.97 E-value=48 Score=32.61 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=56.0
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHH
Q 004861 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~e 668 (726)
+..||.+.|.+++- +.+...+|...++||.+++...++-+...+.||.+.+.+-- -++.++.
T Consensus 21 ~~~l~~~~~~a~~~--------------~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~----~l~~re~ 82 (135)
T TIGR03495 21 LRNARADLERANRV--------------LKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARA----LLAQREQ 82 (135)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 45677777766544 45666778888999999999999999999999998887543 3445555
Q ss_pred HHHHHHHhHHHHHhHH
Q 004861 669 VSKREKKTQMKFQSWE 684 (726)
Q Consensus 669 v~krekk~lkk~qsWE 684 (726)
-.++-+...+.|..|-
T Consensus 83 ~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 83 RIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHcCHHHHHHh
Confidence 5555555556666664
No 183
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.92 E-value=1.6e+02 Score=31.94 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=35.1
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 660 AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 660 ~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
..+-.+|++++++-- -.-+.+.++-....++|..-+..|-+|..++++..
T Consensus 171 ~k~~~~~~~~l~~~~---~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 171 EKTQSPMQPALLQRT---LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777665433 34566677777888888888888888888877643
No 184
>PTZ00121 MAEBL; Provisional
Probab=70.61 E-value=3.7e+02 Score=35.99 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004861 687 KALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 687 K~lLQEELa~eK~Kl~~l~ 705 (726)
|.++|..-..|+.|--+.+
T Consensus 1756 k~ki~~~kkeeekkae~~R 1774 (2084)
T PTZ00121 1756 KKKIAHLKKEEEKKAEEIR 1774 (2084)
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 3333333333333333333
No 185
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=70.45 E-value=1.9e+02 Score=35.73 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhh-hhhhhhhhhHHHHHHHHHHhhhhhh
Q 004861 554 IPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQ-ILEENTMKKLSEMENALCKASGQVE 632 (726)
Q Consensus 554 v~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq-~lEe~T~KrLsEmEnAL~kas~Qle 632 (726)
|++..|--.+++++-+-|-++.-|+.| + .-+.|+.+==+.+-++-+...|+. ..||-||| |+-.+...+..|.
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r-a-e~lpeveael~qr~~al~~aee~~~~~eer~~k----l~~~~qe~naeL~ 180 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR-A-ETLPEVEAELAQRNAALTKAEEHSGNIEERTRK----LEEQLEELNAELQ 180 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh-h-hhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHH----HHHHHHHHHHHHH
Confidence 456666667788888899999999988 3 334443321111111111111111 11343444 3344445555666
Q ss_pred hhhhhHHHHHhhhHHHH------HHHHHHHHhHHHhHHHHHHHHHHHHHhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 633 RANSAVRRLEVENTALR------QEMEAAKLRAAESAASCQEVSKREKKTQ-MKFQSWEKQKALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 633 rAns~vrrLE~EnA~lR------~EmEAaKL~A~ES~~sc~ev~krekk~l-kk~qsWEkQK~lLQEELa~eK~Kl~~l~ 705 (726)
||+ ||+|++-+--. -||++--+.--..+-.=.+.+..+...+ |++..+++.|..|+.++..-+.-+.||.
T Consensus 181 rar---qreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 181 RAR---QREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHH---HHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 653 44444321100 0333322221111111122233333333 2466777888888888877777777776
No 186
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.19 E-value=88 Score=30.13 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=41.5
Q ss_pred hhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 627 ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (726)
Q Consensus 627 as~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~q 706 (726)
...-|++=.+.+|++|+|++.++.|+.+..-.--+...-...+.++- ..++.-.++...|+.|+.+-..+..-+.+
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~----e~~~~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN----EELRALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888889999999999999887765433333222222222111 12233334444555555555555444443
No 187
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=70.10 E-value=1e+02 Score=33.67 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=53.0
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQE 692 (726)
|..+|.+|-+.|. -|++|+--|-=|....-++..- .+-...+..+-.+..+..+++..|+.+-..++|
T Consensus 147 S~~dl~e~~~~l~----DLesa~vkV~WLR~~L~Ei~Ea--------~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~E 214 (269)
T PF05278_consen 147 SESDLKEMIATLK----DLESAKVKVDWLRSKLEEILEA--------KEIYDQHETREEEKEEKDRKLELKKEELEELEE 214 (269)
T ss_pred hHHHHHHHHHHHH----HHHHcCcchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655553 4566666665555444444322 122222333333444455566677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 693 ELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 693 ELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
||+....++..+++.+..++..--++|.
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666666665555553
No 188
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=70.04 E-value=2.2e+02 Score=33.16 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=35.7
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 004861 542 PQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLS 583 (726)
Q Consensus 542 p~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~ 583 (726)
..+.-+.+|.....++..|+.+|.+-+.++.+++.++-..-.
T Consensus 245 ~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 245 SESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQR 286 (582)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778999999999999999999999999998876654443
No 189
>PRK00106 hypothetical protein; Provisional
Probab=69.59 E-value=2.4e+02 Score=33.47 Aligned_cols=85 Identities=12% Similarity=0.220 Sum_probs=53.2
Q ss_pred HHHHhhhhhhhh--hh-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHH
Q 004861 602 LKKEKQILEENT--MK-KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM 678 (726)
Q Consensus 602 lkKeKq~lEe~T--~K-rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lk 678 (726)
+++.++.+|... .+ ||...|+.|.+-..+||+-...+.+.|.+....+++++.-+-...+--..+.+........|.
T Consensus 81 i~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 81 ARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444442 33 677777777777777777777777777666666666666665555656666666666666666
Q ss_pred HHHhHHHH
Q 004861 679 KFQSWEKQ 686 (726)
Q Consensus 679 k~qsWEkQ 686 (726)
+.-.+-.+
T Consensus 161 ~~a~lt~~ 168 (535)
T PRK00106 161 RVAALSQA 168 (535)
T ss_pred HHhCCCHH
Confidence 65554433
No 190
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.43 E-value=2.5e+02 Score=33.55 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=60.9
Q ss_pred HHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH-------HhhhhhhhhhhhHHHHHhhhHHH
Q 004861 576 MQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC-------KASGQVERANSAVRRLEVENTAL 648 (726)
Q Consensus 576 mQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~-------kas~QlerAns~vrrLE~EnA~l 648 (726)
-.+=..+.+-..|++.||+--+++++.-.+-+.==..-+.+|++.|.+++ ..-.++.+...-.-||..++..+
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33444445555666666776666644432221111123567777666654 33456677777777888888888
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHH
Q 004861 649 RQEMEAAKLRAAESAASCQEVSK 671 (726)
Q Consensus 649 R~EmEAaKL~A~ES~~sc~ev~k 671 (726)
|+++++.=|--.+.-..||.+++
T Consensus 189 r~~ld~Etllr~d~~n~~q~Lle 211 (546)
T KOG0977|consen 189 RKQLDDETLLRVDLQNRVQTLLE 211 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 88888888888888887777655
No 191
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.25 E-value=86 Score=38.37 Aligned_cols=95 Identities=28% Similarity=0.317 Sum_probs=68.3
Q ss_pred HHHHHHHHHhHHHHHHH-HHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHH
Q 004861 586 KAELKTLRQEKEEVERL-KKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA 664 (726)
Q Consensus 586 k~ELksLR~EkEE~erl-kKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~ 664 (726)
++||+.||.+..+.+.- +.++ ..++..+.....||.+..-..+.-......|.+|.-++-..|.|+..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek-----------~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~ 440 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEK-----------DRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQG 440 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 68999999888776542 1111 23445555555666666666666667788888888888888888766
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 665 SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 665 sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
+ -...|+||.+-..-|++|+.-++...
T Consensus 441 ~---------------------LnsAQDELvtfSEeLAqLYHHVC~cN 467 (717)
T PF09730_consen 441 S---------------------LNSAQDELVTFSEELAQLYHHVCMCN 467 (717)
T ss_pred H---------------------HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 35679999999999999999888754
No 192
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.10 E-value=17 Score=43.41 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=30.1
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHH-HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 635 NSAVRRLEVENTALRQEMEAAKLRAAESAASC-QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 635 ns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc-~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel 708 (726)
.+.+..|..||+.|++.+. ..|...+- ..+. -.--+..++++..-|+++|+...-+...|.+--
T Consensus 565 ~~~l~~L~~En~~L~~~l~-----~le~~~~~~~~~~-----p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf 629 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLR-----SLEEGNSQPVDAV-----PTSSLESQEKEIAELKAELASAEKRNQRLKEVF 629 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHTTTT---------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----hcccCCCCCcccc-----cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777877776551 11110000 0000 011245666677788888877666666665544
No 193
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=68.96 E-value=12 Score=31.38 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHhh--hh--hhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 614 MKKLSEMENALCKAS--GQ--VERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 614 ~KrLsEmEnAL~kas--~Q--lerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
+-||.|||+-|..-- -- -.-|..-+.+|++||..||+|++-.+
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888888886543 11 22366678899999999999998654
No 194
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=68.95 E-value=42 Score=34.78 Aligned_cols=71 Identities=27% Similarity=0.322 Sum_probs=46.6
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 004861 582 LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa 655 (726)
+..-..+|+.+|++.+++-+-.|-.|.---.+++.|.+-=..+-...-++++ ++.+||.|+.++|+++...
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~---a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEV---ACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4444567888889999998888888876555555444444444444445544 4566778888887776544
No 195
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=68.68 E-value=2.5e+02 Score=33.15 Aligned_cols=10 Identities=40% Similarity=0.026 Sum_probs=5.6
Q ss_pred chhhhhcccc
Q 004861 352 ALEEKFVGSR 361 (726)
Q Consensus 352 ~~~ek~~~~r 361 (726)
+.++|.+++|
T Consensus 136 l~~~k~Gls~ 145 (489)
T PF05262_consen 136 LTPEKAGLSR 145 (489)
T ss_pred cChhhccccc
Confidence 3455666666
No 196
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=68.65 E-value=1.2e+02 Score=33.22 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=19.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHH
Q 004861 547 DEIILKLIPRVRELHNQLHEWTE 569 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtd 569 (726)
|.-+.-||.|++.|+.++.-|..
T Consensus 51 ~~ql~ll~~~~k~L~aE~~qwqk 73 (268)
T PF11802_consen 51 DAQLSLLMMRVKCLTAELEQWQK 73 (268)
T ss_pred chhHHHHHHHHHHHHHHHHHHHh
Confidence 34566899999999999999964
No 197
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=68.48 E-value=2.4e+02 Score=33.07 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKF 680 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~ 680 (726)
.++|...|+.|.+-..+||+-...+.+.|.+....+++++.-+-...+-...+.+........|.+.
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655555555555444444444333333333344433333344433
No 198
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.29 E-value=1.9e+02 Score=31.68 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 665 SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 665 sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~ 705 (726)
.-.|+..|...+-.|+-.||-..+.|.+.|..-++|+.+.+
T Consensus 222 e~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 222 EVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555566788888888888888888888887653
No 199
>PRK11281 hypothetical protein; Provisional
Probab=68.28 E-value=3.5e+02 Score=34.93 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 685 KQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 685 kQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
.....|=++|...-+++.++.|+-.++|+.-+++.
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~ 319 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLT 319 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777766666555443
No 200
>PRK10869 recombination and repair protein; Provisional
Probab=68.19 E-value=2.5e+02 Score=33.08 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=31.4
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhh
Q 004861 673 EKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ-----AKALQEQLEVFFF 723 (726)
Q Consensus 673 ekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~q-----ak~~q~q~E~~w~ 723 (726)
=++-|..+..-+.....|++++...+.++.++-++|.+ |+.+.+.++...+
T Consensus 329 l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~ 384 (553)
T PRK10869 329 LLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMH 384 (553)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566777788888877777777777764 4444555544433
No 201
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=68.05 E-value=2.6e+02 Score=34.11 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 691 QEELVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 691 QEELa~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
+.+|+.....+.+...|.++-+++-++|
T Consensus 282 ~~~L~~~~~~l~~~~~e~~~r~kL~N~i 309 (670)
T KOG0239|consen 282 QSDLESLEENLVEKKKEKEERRKLHNEI 309 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333334443333
No 202
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=67.97 E-value=4.4e+02 Score=35.82 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=76.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhh--------------hh
Q 004861 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILE--------------EN 612 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lE--------------e~ 612 (726)
++-|=..+.-+.-|+.++..|+--.+.=+-+-=+. ....+|+.+.++.+||+|++..| +-
T Consensus 1270 ~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~------d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~ 1343 (1822)
T KOG4674|consen 1270 KAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDS------DKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEK 1343 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566667777777776555433331111 11122222234444444433221 22
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQE 692 (726)
--++|.+..|.....+.+|.+.+..-+||+.--.+.++. +--...+..-...-++...|+...++.=-.-..|-..|++
T Consensus 1344 ~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q-~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~e 1422 (1822)
T KOG4674|consen 1344 IKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ-ELELSDKKKAHELMQEDTSRKLEKLKEKLELSEELESLKE 1422 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 235677888888888999999999999999888877776 2222223333444554444444444333323444445555
Q ss_pred HHHH
Q 004861 693 ELVT 696 (726)
Q Consensus 693 ELa~ 696 (726)
+|..
T Consensus 1423 eL~e 1426 (1822)
T KOG4674|consen 1423 ELEE 1426 (1822)
T ss_pred HHHH
Confidence 5543
No 203
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=67.86 E-value=1.7e+02 Score=31.03 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEEL 694 (726)
..|.+-+..+..--.++.+|.-...+|+.+..++..+|..-+..+..+...=..+..+-.. -+.....|.++.
T Consensus 26 ~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e-------~~~~i~~l~ee~ 98 (246)
T PF00769_consen 26 EALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE-------AEAEIARLEEES 98 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3444444444445567777777778888888888888887777777765533333332222 233333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004861 695 VTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 695 a~eK~Kl~~l~qel~qak~~ 714 (726)
..--.-..+|+++|..|+..
T Consensus 99 ~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 99 ERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 204
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=67.84 E-value=1.3e+02 Score=31.59 Aligned_cols=133 Identities=22% Similarity=0.335 Sum_probs=80.4
Q ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHH-----HHHHH
Q 004861 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ-----EMEAA 655 (726)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~-----EmEAa 655 (726)
-++.-..|+.+||-..-++ ..--+++-.++.++..+++..+-.++....-++|.-.|...||. |-|.+
T Consensus 25 E~~~K~~Eiv~Lr~ql~e~-------~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 25 EVNQKDSEIVSLRAQLREL-------RAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHhHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 4444556677777644433 22345566777888888888888888888888888888877776 55566
Q ss_pred HHhHHHhHH-----HHHHHHH------HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q 004861 656 KLRAAESAA-----SCQEVSK------REKKTQMKFQSWEKQKALFQEELVTEKRKVVQL-----------LQELDQAKA 713 (726)
Q Consensus 656 KL~A~ES~~-----sc~ev~k------rekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l-----------~qel~qak~ 713 (726)
.|+...+.. .|+-+.. +....-..+..-..|-.-|+.||..|+++.-+- ++|.+++=.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~ 177 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIR 177 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665554 1222221 111111223444556667777777777766532 455666666
Q ss_pred HHHHHHh
Q 004861 714 LQEQLEV 720 (726)
Q Consensus 714 ~q~q~E~ 720 (726)
||+|+..
T Consensus 178 YQkQLQ~ 184 (202)
T PF06818_consen 178 YQKQLQQ 184 (202)
T ss_pred HHHHHHH
Confidence 7777664
No 205
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.66 E-value=37 Score=39.03 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~ 650 (726)
++.+++..|.....++.++.+....++...+.|..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566665555555555555555555555533
No 206
>PRK11519 tyrosine kinase; Provisional
Probab=66.72 E-value=1.2e+02 Score=36.57 Aligned_cols=42 Identities=10% Similarity=0.129 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 681 qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
+.-..|...|+.+++..+.++..+.+.-.+..+++.++|...
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~ 383 (719)
T PRK11519 342 RTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQ 383 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 334456667777888777777777766666667777766543
No 207
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.64 E-value=3.4e+02 Score=34.04 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=18.2
Q ss_pred hhcCCchH-HHHHHHhhccccccCCcchhHHHHHHHHhhcc
Q 004861 149 VACGYMEE-VATKAVLRSGLCYGSKDTVSNIVDNTLAFLRS 188 (726)
Q Consensus 149 P~~g~re~-~~~rALL~AG~CYGplDPVSNII~NTIwyl~~ 188 (726)
|..||-.. .+...++.+|+ --.|+.-||.+.+
T Consensus 27 p~~gfitg~qArnfflqS~L--------P~~VLaqIWALsD 59 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQSGL--------PTPVLAQIWALSD 59 (1118)
T ss_pred CCCCccchHhhhhhHHhcCC--------ChHHHHHHHHhhh
Confidence 44454332 24455666664 2346778898865
No 208
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.55 E-value=47 Score=38.67 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=39.9
Q ss_pred hhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 629 ~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel 708 (726)
+||..-+..++.|+.+|..|++|-|.-+-+..--....+.++..++. ...+|...|++|+..-+..|.+|+++|
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~------~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQ------ELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555566666665553333333333344444444332 233466667777777777777777766
Q ss_pred H
Q 004861 709 D 709 (726)
Q Consensus 709 ~ 709 (726)
.
T Consensus 140 ~ 140 (472)
T TIGR03752 140 A 140 (472)
T ss_pred h
Confidence 4
No 209
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=66.55 E-value=2.1e+02 Score=31.52 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH-------hhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHH---
Q 004861 596 KEEVERLKKEKQILEENTMKKLSEMENALCK-------ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS--- 665 (726)
Q Consensus 596 kEE~erlkKeKq~lEe~T~KrLsEmEnAL~k-------as~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s--- 665 (726)
.++..|||++- +.|.+||.|..|.|.- .+|-.=-| --|-|--||-+|-...---+|.--|..-.
T Consensus 176 nl~F~rlK~el----e~tk~Klee~QnelsAwkFTPdS~tGK~LMA--KCR~L~qENeElG~q~s~Gria~Le~eLAmQK 249 (330)
T KOG2991|consen 176 NLFFLRLKGEL----EQTKDKLEEAQNELSAWKFTPDSKTGKMLMA--KCRTLQQENEELGHQASEGRIAELEIELAMQK 249 (330)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhhheeeecCCCcchHHHHH--HHHHHHHHHHHHHhhhhcccHHHHHHHHHHHH
Confidence 34566666553 4588999999998863 23332223 33555555655544333222222222111
Q ss_pred -HHHHHHHHHHhHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 666 -CQEVSKREKKTQM--------KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (726)
Q Consensus 666 -c~ev~krekk~lk--------k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q 715 (726)
.-|-+|.-..-|- ....+..--..||++|.+-+..|-+|.+.++|..+..
T Consensus 250 s~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 250 SQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122222222222 3344556678899999988888888888888877653
No 210
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.47 E-value=37 Score=33.37 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=34.6
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHH
Q 004861 610 EENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL 657 (726)
Q Consensus 610 Ee~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL 657 (726)
++-+..-|.+|+..|.....|+..-...+..|+.|.+.|+.++-...|
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el 114 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL 114 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 445666788888888888888887777777887777777766644433
No 211
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=66.37 E-value=92 Score=33.34 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 691 QEELVTEKRKVVQLLQELDQAKALQ 715 (726)
Q Consensus 691 QEELa~eK~Kl~~l~qel~qak~~q 715 (726)
+++|+..+..+..++.++++++...
T Consensus 177 ~~~~~~~~~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 177 PQDIAQAKASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655443
No 212
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=66.35 E-value=86 Score=33.85 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=14.1
Q ss_pred HhhhhHHHHHHHHHhHHHHHHH
Q 004861 581 RLSKDKAELKTLRQEKEEVERL 602 (726)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erl 602 (726)
.|..-+++|...+.+.+..++.
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~ 108 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRS 108 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777766665544
No 213
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.89 E-value=57 Score=37.52 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004861 692 EELVTEKRKVVQLLQELD 709 (726)
Q Consensus 692 EELa~eK~Kl~~l~qel~ 709 (726)
.+|.+.+++|..|+++|+
T Consensus 152 ~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 152 RRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333334444433
No 214
>PF15294 Leu_zip: Leucine zipper
Probab=65.72 E-value=86 Score=34.30 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
=+++..-|+++|..+|+.|..+|.+|..+ .+++|.++.|
T Consensus 213 ~~~~~k~L~e~L~~~KhelL~~QeqL~~a---ekeLekKfqq 251 (278)
T PF15294_consen 213 KESQQKALEETLQSCKHELLRVQEQLSLA---EKELEKKFQQ 251 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhcc---hhhHHHHhCc
Confidence 34466678889999999998888886654 3455555543
No 215
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=65.38 E-value=1.7e+02 Score=30.22 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=90.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHH--HHH
Q 004861 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEME--NAL 624 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmE--nAL 624 (726)
|+-..+--..|.+|++||+. +.+++-.|.+-..||-..=-+-- .+...|+..| .+|
T Consensus 11 D~~F~~~k~~i~~Le~~Lk~--------l~~~~e~lv~~r~ela~~~~~f~--------------~s~~~L~~~E~~~~L 68 (224)
T cd07623 11 DQWFEEKQQQIENLDQQLRK--------LHASVESLVNHRKELALNTGSFA--------------KSAAMLSNCEEHTSL 68 (224)
T ss_pred CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhcccchhH
Confidence 55666777777777777763 34444444443333332211111 1445555544 456
Q ss_pred HHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh-----HHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH--
Q 004861 625 CKASGQVERANSAVRRLEVENTALRQEMEAAKLR-----AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE-- 697 (726)
Q Consensus 625 ~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~-----A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~e-- 697 (726)
.++=.++-.+.-.++++..+.|. -|..+|. -.....++..++-+-.+.+-..|..+++-.+.++=++.-
T Consensus 69 s~al~~la~~~~ki~~~~~~qa~----~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~ 144 (224)
T cd07623 69 SRALSQLAEVEEKIEQLHGEQAD----TDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLEL 144 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666555566665554321 1222222 234566777888888888888888887666666543332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 698 ---KRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 698 ---K~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
-+|+.+++.|+..++..+.+++.+|..
T Consensus 145 ~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~ 174 (224)
T cd07623 145 SGRTDKLDQAQQEIKEWEAKVDRGQKEFEE 174 (224)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 258999999999999888888887754
No 216
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=64.88 E-value=2.3e+02 Score=31.55 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=35.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 677 lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
.++++.++++|..|+.|+..-|..|..|...|....+.-+-++
T Consensus 107 ~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq 149 (355)
T PF09766_consen 107 EEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQ 149 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3477888999999999999999999999999987766554443
No 217
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=64.79 E-value=3e+02 Score=32.74 Aligned_cols=70 Identities=27% Similarity=0.425 Sum_probs=46.4
Q ss_pred HhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004861 642 EVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA-KALQEQL 718 (726)
Q Consensus 642 E~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qa-k~~q~q~ 718 (726)
+.++.+|-.++.-|--.|.--..-|+.+.+ ||..-|++|..+.+||...+++|..||.||+-. ++++.|+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~-------rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QL 489 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQK-------RLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQL 489 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455666666666666566656666665544 555667777778888888888888888888643 3455554
No 218
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.58 E-value=1.5e+02 Score=32.97 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh-----------------hhhhhhhHHHHHhhhHHHHHHH
Q 004861 590 KTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQ-----------------VERANSAVRRLEVENTALRQEM 652 (726)
Q Consensus 590 ksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Q-----------------lerAns~vrrLE~EnA~lR~Em 652 (726)
+.|+.-.|.+.+|+-|-..-.|-=.---...|-.....++. +|--.--++.||-||-.||.|-
T Consensus 104 ~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea 183 (306)
T PF04849_consen 104 EQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEA 183 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 004861 653 EAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 653 EAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q~ 725 (726)
.--+--.......=+.+..- |.+.|-.=..|-+-|+|||+...+-...-|+|+.+.-...-..+.|-+++
T Consensus 184 ~~L~~et~~~EekEqqLv~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 184 SQLKTETDTYEEKEQQLVLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHhhHHHhhccHHHHHHHHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 219
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.15 E-value=3.5e+02 Score=33.26 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 684 EKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 684 EkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
++|+.-+++-|+.+-++|.++-+++..++.
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777666666554
No 220
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.97 E-value=2e+02 Score=32.16 Aligned_cols=52 Identities=27% Similarity=0.278 Sum_probs=29.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhH-HHHH----------------HHHHHHHHHhhhhHHHHHHHHHhHHHH
Q 004861 548 EIILKLIPRVRELHNQLHEWT-EWAN----------------QKVMQAARRLSKDKAELKTLRQEKEEV 599 (726)
Q Consensus 548 EmilkLv~rv~eLq~qlqewt-dWAn----------------qKvmQaarRL~kdk~ELksLR~EkEE~ 599 (726)
-|+=.|-.|-+.|+....+|. .|+. +-+.++-.+--+-..|++.||+...|+
T Consensus 30 lMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 30 LMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556667777777776 5552 223444444445556666666666555
No 221
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=63.50 E-value=3e+02 Score=32.34 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=7.7
Q ss_pred hhhhhhhhhHHHHHHHH
Q 004861 608 ILEENTMKKLSEMENAL 624 (726)
Q Consensus 608 ~lEe~T~KrLsEmEnAL 624 (726)
..|+...++-.|+|..+
T Consensus 55 EaeeE~~~~R~Ele~el 71 (514)
T TIGR03319 55 EAKEEVHKLRAELEREL 71 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444554443
No 222
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=63.27 E-value=59 Score=32.56 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=38.8
Q ss_pred HHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 640 RLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 640 rLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
.+-.+...+++++++++.++....+...++ -+.....+.+|++.-|.+|.+.+.+++-.|++-+
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-------------~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKL-------------LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677788888888776665544433 2234456677777777777776666654443333
No 223
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=63.27 E-value=24 Score=40.99 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=14.8
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 004861 639 RRLEVENTALRQEMEAAKL 657 (726)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL 657 (726)
.+||.||+.|+.+|||++-
T Consensus 107 keLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 107 EKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3788888888888887654
No 224
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=61.93 E-value=3.1e+02 Score=31.94 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=45.3
Q ss_pred HHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004861 625 CKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (726)
Q Consensus 625 ~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEEL 694 (726)
.-...+.|-++.-++.|+..+..++.|+.-.+..+.....++.+-.+.-...+.-...=|-+-.+++.||
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el 346 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQEL 346 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 3445567777788888888888888888888777777776666655554444433332244444555554
No 225
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=61.84 E-value=2.8e+02 Score=31.43 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
+-+|.++|..+.......---|-.|+.|..+++.+++++.+
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666667777777777777777654
No 226
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.43 E-value=1.8e+02 Score=36.30 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=39.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
..-++-+..+|+.-|+=++++.+.|+.+|.+-+...++--+++|..
T Consensus 902 l~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e 947 (970)
T KOG0946|consen 902 LSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDE 947 (970)
T ss_pred chhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhh
Confidence 3347889999999999999999999999999999888887777754
No 227
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.36 E-value=3.9e+02 Score=32.87 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 691 QEELVTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 691 QEELa~eK~Kl~~l~qel~qak~~ 714 (726)
.+||..-+.+|..++..++++|..
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555544443
No 228
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=61.28 E-value=2.7e+02 Score=30.99 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEM 652 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~Em 652 (726)
+|.+.|..|........--|-.|+.+..+++++++++
T Consensus 262 ~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 262 DIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 3334444444333333334444445555555555544
No 229
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.19 E-value=2.3e+02 Score=33.23 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=19.0
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 004861 673 EKKTQMKFQSWEKQKALFQEELVTE----KRKVVQLLQEL 708 (726)
Q Consensus 673 ekk~lkk~qsWEkQK~lLQEELa~e----K~Kl~~l~qel 708 (726)
.++-.+..+.|-++-.+++|-+++. -.+|..||++|
T Consensus 405 n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 405 NKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777766655555444332 23444444444
No 230
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=61.13 E-value=2.6e+02 Score=30.77 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=70.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHH-------HHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhh-hhhhhhHHH
Q 004861 548 EIILKLIPRVRELHNQLHEWTEWANQ-------KVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILE-ENTMKKLSE 619 (726)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnq-------KvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lE-e~T~KrLsE 619 (726)
++-+++.++..+++.+|.|+.+=-.+ -+.|+-.|+-+-.++-+-|++|.|-+ ||||.-- ..--+-.+-
T Consensus 20 ~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~----Kek~e~q~~q~y~q~s~ 95 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERN----KEKQEDQRVQFYQQESQ 95 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 56777888888888888877654322 34567777777778888888876644 3443221 124567788
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhHHHHH
Q 004861 620 MENALCKASGQVERANSAVRRLEVENTALRQ 650 (726)
Q Consensus 620 mEnAL~kas~QlerAns~vrrLE~EnA~lR~ 650 (726)
+|..|.-+-.+-|.-.--||+||.-|--|..
T Consensus 96 Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 8888888888889999999999988876643
No 231
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=60.92 E-value=4.3e+02 Score=33.24 Aligned_cols=138 Identities=25% Similarity=0.344 Sum_probs=0.0
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhH---------HHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhh
Q 004861 543 QDKRDEIILKLIPRVRELHNQLHEWT---------EWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENT 613 (726)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqewt---------dWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T 613 (726)
.+.++||+--.=.-.++|..-|+--+ +=--.++|-+-..|-+++.- +|+.-++.+++-...-|
T Consensus 860 ke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~s-----k~~q~~~e~er~rk~qE--- 931 (1259)
T KOG0163|consen 860 KEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDS-----KEQQQIEELERLRKIQE--- 931 (1259)
T ss_pred hcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHH---
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHH-HHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKAL-FQE 692 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~l-LQE 692 (726)
|.|.|++-+.+-. --||=|.|+..+++|||+-. |-|....++-.--|++-++ +||
T Consensus 932 ---~~E~ER~rrEaee-------k~rre~ee~k~~k~e~e~kR--------------K~eEeqr~~qee~e~~l~~e~q~ 987 (1259)
T KOG0163|consen 932 ---LAEAERKRREAEE-------KRRREEEEKKRAKAEMETKR--------------KAEEEQRKAQEEEERRLALELQE 987 (1259)
T ss_pred ---HHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004861 693 ELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 693 ELa~eK~Kl~~l~qel~qak 712 (726)
-|+.|.++-++-|+.++|-+
T Consensus 988 qla~e~eee~k~q~~~Eqer 1007 (1259)
T KOG0163|consen 988 QLAKEAEEEAKRQNQLEQER 1007 (1259)
T ss_pred HHHHHHHHHHHHHhHHHHHH
No 232
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=60.91 E-value=3.2e+02 Score=32.29 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=3.4
Q ss_pred cccCCcc
Q 004861 333 SISDNVD 339 (726)
Q Consensus 333 s~~~~~~ 339 (726)
+++||++
T Consensus 76 a~vdhI~ 82 (489)
T PF05262_consen 76 ARVDHIN 82 (489)
T ss_pred CCccHHH
Confidence 4455553
No 233
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=60.88 E-value=2.1e+02 Score=29.57 Aligned_cols=100 Identities=8% Similarity=0.126 Sum_probs=54.0
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHH-----HHHhHHHHHHHHHHHHH
Q 004861 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM-----KFQSWEKQKALFQEELV 695 (726)
Q Consensus 621 EnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lk-----k~qsWEkQK~lLQEELa 695 (726)
+-.|+....+|..+..++-+.-+..-.+.++.+...-.+.+-...-..++++....|- +-+.-+.+-.-|+.++.
T Consensus 30 ~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~ 109 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELA 109 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445556666666666666666666666666666666666666665544433 23344445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 696 TEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 696 ~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
..+.-+.+|...|.+.+....++.+
T Consensus 110 ~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 110 AVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444443
No 234
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.66 E-value=2.8 Score=51.17 Aligned_cols=164 Identities=26% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHhH----HHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 004861 550 ILKLIPRVRELHNQLHEWT----EWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC 625 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewt----dWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ 625 (726)
|-++-.+++|||.++.+=. ++. ..+.-+=+|+..-.+||-.||.+.+.++|.++- +| -.|.|+.--|.
T Consensus 576 ~kk~q~qlkdlq~~lee~~~~~~~~~-~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~---aE----~el~e~~~~~~ 647 (859)
T PF01576_consen 576 LKKLQAQLKDLQRELEEAQRAREELR-EQLAVSERRLRALQAELEELREALEQAERARKQ---AE----SELDELQERLN 647 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHH
Confidence 4556666667666665522 222 222233355666667777777777777776442 22 23444444455
Q ss_pred HhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhH----------HHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004861 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRA----------AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (726)
Q Consensus 626 kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A----------~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa 695 (726)
..+.+..-.....|+||.+++.|..++|-+.=.+ ..-++.+++=+..|+- ..+..|+.|.-|...|.
T Consensus 648 ~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~---~~~~le~~k~~LE~q~k 724 (859)
T PF01576_consen 648 ELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQD---HNQHLEKEKKALERQVK 724 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5555555556678889999998888877542211 1112222233333332 23445666667777777
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhhhc
Q 004861 696 TEKRKVVQLLQEL-DQAKALQEQLEVFFFS 724 (726)
Q Consensus 696 ~eK~Kl~~l~qel-~qak~~q~q~E~~w~q 724 (726)
.-+.+|..+.... ...+.....+|+|.+.
T Consensus 725 eLq~rl~e~E~~~~~~~k~~i~kLE~ri~e 754 (859)
T PF01576_consen 725 ELQARLEEAEQSALKGGKKQIAKLEARIRE 754 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHhhhcccccHHHHHhHHHHH
Confidence 7777766665532 2234555566666553
No 235
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=60.65 E-value=2.8 Score=49.84 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhh---hhhHHHHHHHHHHhhh
Q 004861 578 AARRLSKDKAELKTLRQEKEEVERLKKEKQILEENT---MKKLSEMENALCKASG 629 (726)
Q Consensus 578 aarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T---~KrLsEmEnAL~kas~ 629 (726)
.|.|+.+--.++...|+-.++.+-||+.-+.|||.+ |.+..++|..|.++.+
T Consensus 306 ~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~ 360 (713)
T PF05622_consen 306 KADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARA 360 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455677777788888888899999999999999876 5788888988887654
No 236
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=60.04 E-value=2.4e+02 Score=30.18 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=8.8
Q ss_pred HhHHHHHhHHHHHHHH
Q 004861 675 KTQMKFQSWEKQKALF 690 (726)
Q Consensus 675 k~lkk~qsWEkQK~lL 690 (726)
.+..+||..|.+++.+
T Consensus 193 ~~~~~~Q~~Ee~Ri~~ 208 (269)
T cd07673 193 ETAQKFQDIEETHLIR 208 (269)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666666665543
No 237
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.36 E-value=3.6e+02 Score=34.72 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhH--HHHHHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW--EKQKALFQ 691 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsW--EkQK~lLQ 691 (726)
.=+|=..|.-++++...|.|-|+.+.+++.....--+|.++-| .|...--.++.+.+++--.+=.-. .-+.+.+.
T Consensus 219 L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k---~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~k 295 (1141)
T KOG0018|consen 219 LWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRK---KERGKIRRELQKVDKKISEKEEKLAERPELIKVK 295 (1141)
T ss_pred HHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcc
Confidence 3356667778888888888877777766654433333333333 233333333433333322211111 11334444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004861 692 EELVTEKRKVVQLLQELDQ 710 (726)
Q Consensus 692 EELa~eK~Kl~~l~qel~q 710 (726)
++.+..+.||..++..++.
T Consensus 296 e~~~~~k~rl~~~~k~i~~ 314 (1141)
T KOG0018|consen 296 ENASHLKKRLEEIEKDIET 314 (1141)
T ss_pred hhhccchhHHHHhhhhHHH
Confidence 5555555555555444443
No 238
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=59.00 E-value=3.5e+02 Score=31.58 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=12.2
Q ss_pred HHHhhCCCCChHHHHHHHHHhCC
Q 004861 217 VLREVRPFFSTGDAMWCLLICDM 239 (726)
Q Consensus 217 fLr~~fP~LS~~DAmwyLLlaDa 239 (726)
|+..+.||- .+++-|+.--+.
T Consensus 35 ~f~~~vP~~--e~lv~~~e~~~~ 55 (582)
T PF09731_consen 35 FFEEYVPYG--EELVDYIEEEES 55 (582)
T ss_pred HHHHhCCcH--HHHHHHHhhhcc
Confidence 566666764 556666655443
No 239
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=58.92 E-value=96 Score=27.42 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=53.1
Q ss_pred HhhhhhhhhhhhHHHHHhhhHHHHHHHH--HHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004861 626 KASGQVERANSAVRRLEVENTALRQEME--AAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQ 703 (726)
Q Consensus 626 kas~QlerAns~vrrLE~EnA~lR~EmE--AaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~ 703 (726)
--..-|++.+..|+.|.....+|...|+ ..+|+....+....+.....+ ...|+..-.+.-..+++=+..-|.++..
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455678888889999888888887664 566666666666666666666 7777776666666666555555555555
Q ss_pred HH
Q 004861 704 LL 705 (726)
Q Consensus 704 l~ 705 (726)
|+
T Consensus 90 L~ 91 (92)
T PF14712_consen 90 LQ 91 (92)
T ss_pred hc
Confidence 54
No 240
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.75 E-value=1.4e+02 Score=36.77 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=66.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHhH----HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHH
Q 004861 575 VMQAARRLSKDKAELKTLRQEK----EEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (726)
Q Consensus 575 vmQaarRL~kdk~ELksLR~Ek----EE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~ 650 (726)
+...|+|++-+...+..=++-. .+.+++ +++-..+ ..++|.....+....+.+...-++||.+...+++
T Consensus 490 a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~l------i~~l~~~-~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 562 (782)
T PRK00409 490 AFEIAKRLGLPENIIEEAKKLIGEDKEKLNEL------IASLEEL-ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE 562 (782)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999998888876554432 233332 1111111 1123333334444444444455666666677776
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHH-HHhHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004861 651 EMEAAKLRAAESAASCQEVSKRE-KKTQMKFQSWEKQ--KALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 651 EmEAaKL~A~ES~~sc~ev~kre-kk~lkk~qsWEkQ--K~lLQEELa~eK~Kl~~l~qel~ 709 (726)
+.+.....|.+-+....+-+|++ ++.+++++.-.++ +..-++++.+-++++.++.+++.
T Consensus 563 ~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 624 (782)
T PRK00409 563 EEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKE 624 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhh
Confidence 66666666666666555555554 4555666532211 11334455555555555554433
No 241
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=58.62 E-value=80 Score=34.40 Aligned_cols=79 Identities=33% Similarity=0.374 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHH--HHHHhhhhhhh---hhhhHHHHHhhhHHH
Q 004861 574 KVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMEN--ALCKASGQVER---ANSAVRRLEVENTAL 648 (726)
Q Consensus 574 KvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEn--AL~kas~Qler---Ans~vrrLE~EnA~l 648 (726)
.-+.-|++|++-+.|+...=--+|+ +-.-||+++ +-=|.+|=|| +..+|+.=++| |.+.|++||+-|..|
T Consensus 162 nylrfa~KLG~~~~efn~~f~she~-~l~dkekEl----~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DL 236 (311)
T PF04642_consen 162 NYLRFAGKLGKLILEFNSVFLSHED-QLSDKEKEL----ESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDL 236 (311)
T ss_pred hhhhhHHHHHHHHHHhhcccccccc-ccccHHHHH----HHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHH
Confidence 3455677888877776543211111 000111110 0012233333 35666666665 567899999999999
Q ss_pred HHHHHHHHH
Q 004861 649 RQEMEAAKL 657 (726)
Q Consensus 649 R~EmEAaKL 657 (726)
-+-+|+.|=
T Consensus 237 saKLe~gkn 245 (311)
T PF04642_consen 237 SAKLEPGKN 245 (311)
T ss_pred HHhhcCCcc
Confidence 888777663
No 242
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=57.75 E-value=2.4e+02 Score=29.25 Aligned_cols=72 Identities=25% Similarity=0.341 Sum_probs=48.2
Q ss_pred HHHHHHHHH----hhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHH
Q 004861 573 QKVMQAARR----LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (726)
Q Consensus 573 qKvmQaarR----L~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~l 648 (726)
+|++|+|+- |.--+..|..|.+|..|++.. +.|....|..+...+..|..+++.-+.+...|
T Consensus 49 ~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~v--------------V~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L 114 (188)
T PF05335_consen 49 DKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAV--------------VQEEKASLQQAQANAQAAQRAAQQAQQQLETL 114 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888774 555667888899998888776 45555566666666666666666666666666
Q ss_pred HHHHHHHHHh
Q 004861 649 RQEMEAAKLR 658 (726)
Q Consensus 649 R~EmEAaKL~ 658 (726)
+.=++.++=.
T Consensus 115 ~~~l~~a~~n 124 (188)
T PF05335_consen 115 KAALKAAQAN 124 (188)
T ss_pred HHHHHHHHHH
Confidence 6655555533
No 243
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.61 E-value=1.9e+02 Score=30.24 Aligned_cols=42 Identities=12% Similarity=0.307 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
.+..-+.+...|+..++.++.+|..|+++++++++.+.++..
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445577778888888888888888888888877777653
No 244
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.06 E-value=3.4e+02 Score=33.44 Aligned_cols=41 Identities=15% Similarity=-0.142 Sum_probs=21.7
Q ss_pred hhhHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004861 203 LPQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (726)
Q Consensus 203 L~rle~RSL~GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am 247 (726)
..+.+.+.|..|...+..+.+.|-. +.. .++.+|+..|.+.
T Consensus 238 ~~~e~~~il~~L~~~i~~~~~~l~~--~~~--~l~~lD~l~a~a~ 278 (771)
T TIGR01069 238 EECEIEKILRTLSEKVQEYLLELKF--LFK--EFDFLDSLQARAR 278 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHH
Confidence 3445667777777777766553321 111 2344555555443
No 245
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=57.05 E-value=1e+02 Score=32.93 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=19.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
+++.++.+...++..+. ...+..++.++.+++..-++.+..
T Consensus 160 ~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~l~~a~~~ 200 (331)
T PRK03598 160 TLKSAQDKLSQYREGNR--PQDIAQAKASLAQAQAALAQAELN 200 (331)
T ss_pred HHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443322 234555555555555555554443
No 246
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=56.76 E-value=5.5e+02 Score=33.15 Aligned_cols=129 Identities=26% Similarity=0.379 Sum_probs=73.6
Q ss_pred chhHHHHHHhHHHHHHHHHH----HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHH------------------HHHHH
Q 004861 545 KRDEIILKLIPRVRELHNQL----HEWTEWANQKVMQAARRLSKDKAELKTLRQEKE------------------EVERL 602 (726)
Q Consensus 545 ~KDEmilkLv~rv~eLq~ql----qewtdWAnqKvmQaarRL~kdk~ELksLR~EkE------------------E~erl 602 (726)
.|-|..+.|-.-+.+|+.++ |+--||-.. |+|......||+.||.-+| -++.|
T Consensus 195 EK~enll~lr~eLddleae~~klrqe~~e~l~e-----a~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveel 269 (1195)
T KOG4643|consen 195 EKFENLLRLRNELDDLEAEISKLRQEIEEFLDE-----AHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEEL 269 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHH
Confidence 45566777777777776665 344455443 5677777778888876433 23333
Q ss_pred HH-------Hhhhhhhh---hh----------------hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 603 KK-------EKQILEEN---TM----------------KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 603 kK-------eKq~lEe~---T~----------------KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
|. +|+.|||- ++ ++|..|+....--..|++.-.--...|+++++.|-..||--+
T Consensus 270 kedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq 349 (1195)
T KOG4643|consen 270 KEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQ 349 (1195)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 33 45555554 22 345555555444445555555555667777777777777776
Q ss_pred HhHHHhHHHHHHHHHHHHHhHHH
Q 004861 657 LRAAESAASCQEVSKREKKTQMK 679 (726)
Q Consensus 657 L~A~ES~~sc~ev~krekk~lkk 679 (726)
++ +|--..|.+-.-+|...|..
T Consensus 350 ~~-se~~E~en~Sl~~e~eqLts 371 (1195)
T KOG4643|consen 350 IF-SENEELENESLQVENEQLTS 371 (1195)
T ss_pred hh-hcchhhhhhhHHHHHHHhhh
Confidence 65 44444455544444444443
No 247
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=56.55 E-value=2.5e+02 Score=29.11 Aligned_cols=120 Identities=23% Similarity=0.255 Sum_probs=79.2
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhHHHH--HHHHHHHHHHhhhhH-HHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 004861 545 KRDEIILKLIPRVRELHNQLHEWTEWA--NQKVMQAARRLSKDK-AELKTLRQEKEEVERLKKEKQILEENTMKKLSEME 621 (726)
Q Consensus 545 ~KDEmilkLv~rv~eLq~qlqewtdWA--nqKvmQaarRL~kdk-~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmE 621 (726)
.|..|+-.|-.+|+|.+.-|++-+-=- -|..+++|++-.++- .+|++|+.=.+.++.- -++.........
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~n-------l~~a~~~a~~AQ 136 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQAN-------LANAEQVAEGAQ 136 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 477788888888888888887765432 255666666644432 2233333222222111 334445555666
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHH
Q 004861 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSK 671 (726)
Q Consensus 622 nAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~k 671 (726)
..|.-...=|+.|...|..|.-...+-|.+.|..|-.|...+..-+|+..
T Consensus 137 ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~eAkq 186 (188)
T PF05335_consen 137 QELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQEAKQ 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666677788999999999999999999999999888877776666543
No 248
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=56.27 E-value=2.9e+02 Score=33.48 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 681 qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
+.-..|..-|+.+++..+.++.++.+.-.+..+++.++|..
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~ 382 (726)
T PRK09841 342 RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAG 382 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34445667777778777777777776666666666666653
No 249
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=56.11 E-value=2.4e+02 Score=29.45 Aligned_cols=114 Identities=24% Similarity=0.281 Sum_probs=73.0
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHHHHHHHhHHHH-HHHHHHHH--HHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhh
Q 004861 536 SLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWA-NQKVMQAA--RRLSKDKAELKTLRQEKEEVERLKKEKQILEEN 612 (726)
Q Consensus 536 ~~~~~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWA-nqKvmQaa--rRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~ 612 (726)
++..|.|+.....+-+.|.+...+ =..++++. +++||.|| ||=..|+.-+-.||.++--.+.|-+ +=.+.|.
T Consensus 37 ~l~p~F~~~~~rdiY~sL~~~~~~----~~~~k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q-~GsIGDd 111 (190)
T PF09802_consen 37 SLEPWFPEHLQRDIYLSLLHMEDP----PASEKKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQ-NGSIGDD 111 (190)
T ss_pred cCCCCCCchhHHHHHHHHHhccCC----ccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-CCCccHH
Confidence 355899988777777777665432 14455564 89999988 7777777777777777777666632 3344566
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH-HhHHHhHHHHHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK-LRAAESAASCQEVSK 671 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK-L~A~ES~~sc~ev~k 671 (726)
..+|+.. +...+|.|.-++..|-++=+ =++.-=..+|+|+.-
T Consensus 112 ~wqrf~~-----------------aeKe~E~El~eVv~EAn~l~pgWgq~IF~~A~Ei~~ 154 (190)
T PF09802_consen 112 LWQRFQR-----------------AEKEMEEELKEVVQEANALKPGWGQTIFQSANEICF 154 (190)
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHH
Confidence 6666643 45567777888877766533 233334455555443
No 250
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=56.04 E-value=1.2e+02 Score=32.62 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=56.9
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 636 SAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (726)
Q Consensus 636 s~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q 715 (726)
-..-|=|.+||.+|+= |.--+-..+.+++.++-..+-.||+---++|.-|-+||..-..++-.+|++|...+.-.
T Consensus 105 ~elvrkEl~nAlvRAG-----LktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 105 VELVRKELKNALVRAG-----LKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666643 33444555777777777777778888888888888888888888888888887777666
Q ss_pred HHHHhhh
Q 004861 716 EQLEVFF 722 (726)
Q Consensus 716 ~q~E~~w 722 (726)
-++|-..
T Consensus 180 s~LeE~~ 186 (290)
T COG4026 180 SRLEEML 186 (290)
T ss_pred HHHHHHH
Confidence 6666443
No 251
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=55.89 E-value=1.2e+02 Score=30.56 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 682 sWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
-.++--..|++|+.+-.--+..+.+.+.+.+.--+++=.||-+
T Consensus 141 ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 141 EKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455778888887777777777777777766666677743
No 252
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=55.75 E-value=5.8e+02 Score=33.13 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 686 QKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 686 QK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
....|=++|...-+++..+.++-.++++.-+++.
T Consensus 266 ~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~ 299 (1109)
T PRK10929 266 INRELSQALNQQAQRMDLIASQQRQAASQTLQVR 299 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777666666665554443
No 253
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=55.53 E-value=2.7e+02 Score=29.22 Aligned_cols=141 Identities=26% Similarity=0.303 Sum_probs=86.6
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHH--------HHHHHHhhhhhhhhhhhHHHHH
Q 004861 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEV--------ERLKKEKQILEENTMKKLSEME 621 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~--------erlkKeKq~lEe~T~KrLsEmE 621 (726)
--+|..-+-+|.++++.- |++.|-|+-|-.++..||++=++-||- ..+.||.|.|. .++..++
T Consensus 38 na~L~~e~~~L~~q~~s~-----Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~----~~i~~Lq 108 (193)
T PF14662_consen 38 NAQLAEEITDLRKQLKSL-----QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLV----AEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 345666667777777754 678888888888888888877776653 33455555554 3455555
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHH----HhHHHHHhHHHHHHHHHHHHHHH
Q 004861 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREK----KTQMKFQSWEKQKALFQEELVTE 697 (726)
Q Consensus 622 nAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krek----k~lkk~qsWEkQK~lLQEELa~e 697 (726)
..-.|-.++.|--+.....|-.+++.|+.+ +.-.|+..+|.+..=-++ ..|++...| -..+-+||..|
T Consensus 109 een~kl~~e~~~lk~~~~eL~~~~~~Lq~Q-----l~~~e~l~~~~da~l~e~t~~i~eL~~~ieE---y~~~teeLR~e 180 (193)
T PF14662_consen 109 EENGKLLAERDGLKKRSKELATEKATLQRQ-----LCEFESLICQRDAILSERTQQIEELKKTIEE---YRSITEELRLE 180 (193)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHH
Confidence 666666666666677777777777777764 456677777766544333 223333333 23455666555
Q ss_pred HHHHHHHHHHHHH
Q 004861 698 KRKVVQLLQELDQ 710 (726)
Q Consensus 698 K~Kl~~l~qel~q 710 (726)
++ .|.++|.|
T Consensus 181 ~s---~LEeql~q 190 (193)
T PF14662_consen 181 KS---RLEEQLSQ 190 (193)
T ss_pred HH---HHHHHHHh
Confidence 54 45555555
No 254
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.46 E-value=1.1e+02 Score=35.04 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=22.1
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHH
Q 004861 636 SAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKRE 673 (726)
Q Consensus 636 s~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~kre 673 (726)
+.|.+...||+.|++ .|+.+..+...|||+..|-
T Consensus 292 ~~I~~VarENs~Lqr----QKle~e~~l~a~qeakek~ 325 (442)
T PF06637_consen 292 AGIERVARENSDLQR----QKLEAEQGLQASQEAKEKA 325 (442)
T ss_pred hhHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 345555566665554 4677777888888877663
No 255
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=55.10 E-value=2.9e+02 Score=29.48 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=45.4
Q ss_pred HHHHHHHHHh---------hhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH-hhhhhhhhhhhHHHHH
Q 004861 573 QKVMQAARRL---------SKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK-ASGQVERANSAVRRLE 642 (726)
Q Consensus 573 qKvmQaarRL---------~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k-as~QlerAns~vrrLE 642 (726)
.+..+++-|+ ...--||+-.++|.++. + .+....+..+....+.. ...|+.+.+..+..|.
T Consensus 78 ~~~~~~~~R~~lAvliaivIs~pl~l~iF~~eI~~~--l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 148 (301)
T PF14362_consen 78 KRLLQALPRLLLAVLIAIVISEPLELKIFEKEIDQK--L-------DEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQ 148 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3344566664 56777888888777632 2 33333333333333333 5667777777777777
Q ss_pred hhhHHHHHHHHHHH
Q 004861 643 VENTALRQEMEAAK 656 (726)
Q Consensus 643 ~EnA~lR~EmEAaK 656 (726)
.|+.++.++..++.
T Consensus 149 ~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 149 AEIDQLEKEIDRAQ 162 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 256
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.00 E-value=5.7e+02 Score=32.79 Aligned_cols=93 Identities=27% Similarity=0.376 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHH-hhhhhhh--hhhhHH-HHHHHH---HHh
Q 004861 555 PRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKE-KQILEEN--TMKKLS-EMENAL---CKA 627 (726)
Q Consensus 555 ~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKe-Kq~lEe~--T~KrLs-EmEnAL---~ka 627 (726)
.|++=-=.|++||+- |+|+.---|- -||+--|+|++|++..|.+ |+.|-|- ||.=++ +-|-|= +..
T Consensus 258 ekmkiqleqlqEfkS----kim~qqa~Lq---rel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesL 330 (1243)
T KOG0971|consen 258 EKMKIQLEQLQEFKS----KIMEQQADLQ---RELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESL 330 (1243)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344333346777753 6676655554 4677788888888877653 3333332 221111 122222 333
Q ss_pred hhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 628 SGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 628 s~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
...|+-+.-.+-.||++.--||+|||-
T Consensus 331 Q~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 331 QQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777778888899999999999984
No 257
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=54.23 E-value=2.9e+02 Score=29.24 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 684 EkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
+.+...|...|..-..||.++...+..++......++
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA 148 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKA 148 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777787777777776666655554
No 258
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.17 E-value=1.6e+02 Score=34.35 Aligned_cols=17 Identities=12% Similarity=0.013 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004861 692 EELVTEKRKVVQLLQEL 708 (726)
Q Consensus 692 EELa~eK~Kl~~l~qel 708 (726)
+++-.-+.||.++++.+
T Consensus 410 knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 410 KNQDVWRGKLKELEERE 426 (493)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 259
>PRK10698 phage shock protein PspA; Provisional
Probab=53.60 E-value=2.9e+02 Score=28.94 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 686 QKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 686 QK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
+-.-|+.++.....-+.+|++.+.+.+.-..
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433333333
No 260
>PRK10093 primosomal replication protein N''; Provisional
Probab=52.74 E-value=1.6e+02 Score=30.24 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=61.0
Q ss_pred hhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHH--------------------H
Q 004861 627 ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEK--------------------Q 686 (726)
Q Consensus 627 as~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEk--------------------Q 686 (726)
..+++++++=.+.||-..+.+|..|.-..+|+..|....=.....++ +..=|-||. +
T Consensus 61 ~~~~~~~~~flaEkL~aQi~ALqRElatq~lR~~e~~~~~~~~~~~~---~lqHQd~ERRL~~Mv~dre~~L~~a~~~~~ 137 (171)
T PRK10093 61 EQQQLPQVAWLAEHLAAQLEAIAREAAAWSLREWDSAPPGLARWQRK---RIQHQEFERRLLEMVAERRARLARATDLVE 137 (171)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCCCCchhHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 36788899999999999999999999999999998843211111111 114445553 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 687 KALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 687 K~lLQEELa~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
.-.||.||.+-...|..=++-|..++...+..
T Consensus 138 qq~lq~el~alegRL~RCrqAl~~IE~~Ier~ 169 (171)
T PRK10093 138 QQTLHREVEAYEGRLARCRHALEKIENVLARL 169 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45577777777777777777777666655543
No 261
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.36 E-value=48 Score=36.36 Aligned_cols=42 Identities=31% Similarity=0.369 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
.+.+|.++|..|..+..+|+.....+.+++.+.+.|+.+.+.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555566555555555544
No 262
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=51.79 E-value=80 Score=33.46 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=50.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 004861 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (726)
|+=|=+|-..++.| .++++=..|-..|..+.+..++.+..+|...+ .+....+++.-+.+.+...|+=.+|+..++.
T Consensus 67 e~~le~Le~el~~l-~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~--~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~ 143 (256)
T PF14932_consen 67 EEDLEALEEELEAL-QEYKELYEQLRNKLQQLDSSLSQELSELEGKE--EEAQKKLKKAQKELSAECSKLNNELNQLLGE 143 (256)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666 55566666777777777777777777777655 3334456666666666666666666665555
Q ss_pred hhhhh
Q 004861 627 ASGQV 631 (726)
Q Consensus 627 as~Ql 631 (726)
.+.++
T Consensus 144 v~~l~ 148 (256)
T PF14932_consen 144 VSKLA 148 (256)
T ss_pred HHHHH
Confidence 44443
No 263
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.61 E-value=42 Score=31.68 Aligned_cols=48 Identities=27% Similarity=0.333 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHh
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES 662 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES 662 (726)
.+|.+||.-|.....+|..-...+..|.-||+.||.|-+.-+-+-.+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998887665554443
No 264
>PLN02718 Probable galacturonosyltransferase
Probab=51.45 E-value=1.4e+02 Score=35.89 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=62.7
Q ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHhhh---hhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHH
Q 004861 581 RLSKDKAELKTLRQEKEEVERLKKEKQI---LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL 657 (726)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~---lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL 657 (726)
++..-..=-+.||+-..|.||.=-+--. |-.+.-+++.+||..|.||.....-..+.+++|.+-.-....|+.++|.
T Consensus 185 ~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~ 264 (603)
T PLN02718 185 PPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFPNCPAIATKLRAMTYNTEEQVRAQKN 264 (603)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456778888888876443222 6677889999999999999999999999999999988888888888887
Q ss_pred hHH
Q 004861 658 RAA 660 (726)
Q Consensus 658 ~A~ 660 (726)
+++
T Consensus 265 q~~ 267 (603)
T PLN02718 265 QAA 267 (603)
T ss_pred HHH
Confidence 765
No 265
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=51.14 E-value=1.6e+02 Score=26.96 Aligned_cols=86 Identities=19% Similarity=0.316 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhh--hhH------HHHHHHH
Q 004861 553 LIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTM--KKL------SEMENAL 624 (726)
Q Consensus 553 Lv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~--KrL------sEmEnAL 624 (726)
++.+.+.|+.++ +++++.-+.|-.++.|. +...+|-..|++++. +.+ ...+-|+
T Consensus 4 ~~~~~q~l~~~~--------~~l~~~~~~l~~~~~E~----------~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~ 65 (105)
T cd00632 4 QLAQLQQLQQQL--------QAYIVQRQKVEAQLNEN----------KKALEELEKLADDAEVYKLVGNVLVKQEKEEAR 65 (105)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH----------HHHHHHHHcCCCcchHHHHhhhHHhhccHHHHH
Confidence 566667777664 34455544454444444 444444444544332 111 1234444
Q ss_pred HHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 625 CKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 625 ~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
..-..+++.....+.+|+.+...+..+|...|
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666666554
No 266
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.09 E-value=2.3e+02 Score=27.09 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 690 LQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
|.+|+...+..|.+|..+...++..=.+.|+.|.
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~ 97 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEESEASWE 97 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344444444445555555555555555555553
No 267
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=51.02 E-value=1.8e+02 Score=35.24 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=61.8
Q ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 633 RANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 633 rAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
.+...|-||..|+.+++++.+.....-+.-..++..+..+-..+..|-.-.+.....-.++-..-++-..+|+..++++.
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q 162 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQ 162 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777766666666666777777777777777766666666666777777777888888888888
Q ss_pred HHHHHHH
Q 004861 713 ALQEQLE 719 (726)
Q Consensus 713 ~~q~q~E 719 (726)
..+...+
T Consensus 163 ~~~R~a~ 169 (632)
T PF14817_consen 163 DIQRKAK 169 (632)
T ss_pred HHHhhcc
Confidence 8877544
No 268
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=50.51 E-value=1.4e+02 Score=33.52 Aligned_cols=6 Identities=0% Similarity=-0.031 Sum_probs=2.7
Q ss_pred cCcccC
Q 004861 528 AGILSD 533 (726)
Q Consensus 528 ~~i~~D 533 (726)
..++.+
T Consensus 65 ~eV~V~ 70 (352)
T COG1566 65 TEVNVK 70 (352)
T ss_pred EEEEec
Confidence 444444
No 269
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=50.43 E-value=4e+02 Score=30.20 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q 004861 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKR 699 (726)
Q Consensus 620 mEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~ 699 (726)
++..+..-+.++--.+..+..++.+..++++.+.+.=.+-..+..+- ++.-++|..-|..+++.-+.
T Consensus 297 ~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~-------------~~~l~~~~~~L~~~~~~l~~ 363 (458)
T COG3206 297 VRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNE-------------LALLEQQEAALEKELAQLKG 363 (458)
T ss_pred HHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555666666666655544333333333222 34444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004861 700 KVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 700 Kl~~l~qel~qak~~q~q~E 719 (726)
.+..+-+...+..+++.++|
T Consensus 364 ~~~~~~~~~~~l~~L~Re~~ 383 (458)
T COG3206 364 RLSKLPKLQVQLRELEREAE 383 (458)
T ss_pred HHhhchHhhhHHHHHHHHHH
Confidence 44444444444444444444
No 270
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.83 E-value=2.6e+02 Score=27.32 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=89.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 004861 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (726)
|+-+...-+.|..|+.+|+.. .=..+++.+..+.|+.+..+|-.-=..--. .|+.+- ..|-++|.+
T Consensus 3 d~~f~~~~~~v~~le~~l~~l-~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~----------~e~~~~---~~l~~~~~~ 68 (218)
T cd07596 3 DQEFEEAKDYILKLEEQLKKL-SKQAQRLVKRRRELGSALGEFGKALIKLAK----------CEEEVG---GELGEALSK 68 (218)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hccccc---hhhHHHHHH
Confidence 455677778888888888763 346667777777777777766441111110 122111 233344444
Q ss_pred hhhhhhhhhhh----HHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH----
Q 004861 627 ASGQVERANSA----VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEK---- 698 (726)
Q Consensus 627 as~QlerAns~----vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK---- 698 (726)
.+.=.++.... +........+.=.+ -.....+..+++++-...+..++.-++.-...+.++..-+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~e~L~~-------y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~ 141 (218)
T cd07596 69 LGKAAEELSSLSEAQANQELVKLLEPLKE-------YLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPG 141 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 44333221111 11111111111111 2355667778888877777777777777777776665543
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 004861 699 ---RKVVQLLQELDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 699 ---~Kl~~l~qel~qak~~q~q~E~~w~q~ 725 (726)
.||..++.++.+++....+++.+|..+
T Consensus 142 ~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 142 IKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888877777666543
No 271
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.43 E-value=2.3e+02 Score=34.95 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=57.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHhHH----HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHH
Q 004861 575 VMQAARRLSKDKAELKTLRQEKE----EVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (726)
Q Consensus 575 vmQaarRL~kdk~ELksLR~EkE----E~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~ 650 (726)
++..|+|++-+...+..=+.-.. +.+++ -..||+. ..++|.....+......+...-++||.+..++++
T Consensus 485 a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~l---i~~L~~~----~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 485 AFEIAQRYGIPHFIIEQAKTFYGEFKEEINVL---IEKLSAL----EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999988887765544332 22222 1111111 1123333333333334444455666666666666
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHH-HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004861 651 EMEAAKLRAAESAASCQEVSKRE-KKTQMKFQSWEKQKALFQEELVTEKRKVVQL 704 (726)
Q Consensus 651 EmEAaKL~A~ES~~sc~ev~kre-kk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l 704 (726)
+.+.....|.+-+....+-++++ ++.+++++ ++...++++..-++++..+
T Consensus 558 ~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk----~~~~~~~~~~~~~~~~~~~ 608 (771)
T TIGR01069 558 RERNKKLELEKEAQEALKALKKEVESIIRELK----EKKIHKAKEIKSIEDLVKL 608 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccccHHHHHHHHHHHHHH
Confidence 66666655655555444434333 23333333 2223344444444444443
No 272
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=49.20 E-value=6.1e+02 Score=31.45 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=31.3
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhHHH-HHHHHHHHHHHhhhhHHHHHHH
Q 004861 544 DKRDEIILKLIPRVRELHNQLHEWTEW-ANQKVMQAARRLSKDKAELKTL 592 (726)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtdW-AnqKvmQaarRL~kdk~ELksL 592 (726)
-+--|||--=++-++-|+.+++.-.+| .+||. ||...-.||..|
T Consensus 62 sqqaelis~qlqE~rrle~e~~~lre~sl~qkm-----rLe~qa~Ele~l 106 (739)
T PF07111_consen 62 SQQAELISRQLQELRRLEEEVRALRETSLQQKM-----RLEAQAEELEAL 106 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHH
Confidence 455688888888889999999999999 45554 344444466555
No 273
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=49.19 E-value=1.9e+02 Score=32.34 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 004861 555 PRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERA 634 (726)
Q Consensus 555 ~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerA 634 (726)
.+|.+|=.-|+.|.-++.. |=.=..-|++|+.=++++..+ ..+|.++|.-...-..+++.-
T Consensus 295 ~KI~eLy~~l~~~~~~~~~--------lP~lv~RL~tL~~lH~~a~~~-----------~~~l~~le~~q~~l~~~l~~~ 355 (388)
T PF04912_consen 295 SKIDELYEILPRWDPYAPS--------LPSLVERLKTLKSLHEEAAEF-----------SQTLSELESQQSDLQSQLKKW 355 (388)
T ss_pred hHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888876 555567789999999999766 578888888888888888888
Q ss_pred hhhHHHHHh
Q 004861 635 NSAVRRLEV 643 (726)
Q Consensus 635 ns~vrrLE~ 643 (726)
+.++..++.
T Consensus 356 ~~~L~~ve~ 364 (388)
T PF04912_consen 356 EELLNKVEE 364 (388)
T ss_pred HHHHHHHHH
Confidence 888887773
No 274
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=48.98 E-value=79 Score=33.95 Aligned_cols=59 Identities=27% Similarity=0.282 Sum_probs=40.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 639 RRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
.|++-.|...|+..+++|....| ...+..+|..|..+.+.+|.+|++||.+.+....+.
T Consensus 197 err~rNN~A~~kSR~~~k~~~~e---------------------~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 197 ERRRRNNEAVRKSRDKRKQKEDE---------------------MAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHhhhHHHHHhhhhHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566677777788877776522 223455666677777888888888888888776664
No 275
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=48.92 E-value=5.4e+02 Score=30.74 Aligned_cols=88 Identities=20% Similarity=0.316 Sum_probs=48.4
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHH--------hHHHHHHHHHH
Q 004861 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQ--------SWEKQKALFQE 692 (726)
Q Consensus 621 EnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~q--------sWEkQK~lLQE 692 (726)
+.-|..-..|+..|++-+..+..|.-.|..-.+.+ .+.-.+|.+-++..+..+.++| +.|.|-..+-|
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~a----E~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESA----EKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44556667777777877777777776666554443 1122234444444433333332 45555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004861 693 ELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 693 ELa~eK~Kl~~l~qel~qak 712 (726)
-|+.--.||++-++++++.|
T Consensus 495 HLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 495 HLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555544
No 276
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=48.58 E-value=2.9e+02 Score=27.93 Aligned_cols=38 Identities=11% Similarity=0.344 Sum_probs=31.9
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 004861 545 KRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRL 582 (726)
Q Consensus 545 ~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL 582 (726)
....+.-.|+.-.+.-+.+.++|.|=.+-+++..+..+
T Consensus 45 ~~~~l~~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~I 82 (184)
T PF05791_consen 45 KLSDLQKDLVQHQKTAKEHAKEWLDTIKPQIIDLNQDI 82 (184)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 45667889999999999999999998888888877766
No 277
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=48.19 E-value=7.9e+02 Score=32.50 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=17.4
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhHHH
Q 004861 544 DKRDEIILKLIPRVRELHNQLHEWTEW 570 (726)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtdW 570 (726)
+-..+.+..|+--+..++.-+++...-
T Consensus 774 ~~~~~~~~~l~~~~~~~e~~~~d~~~~ 800 (1294)
T KOG0962|consen 774 DAAEESAETLQTDVTVLERFLKDLKLR 800 (1294)
T ss_pred chhHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 445556667777777777777666543
No 278
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=47.84 E-value=1.9e+02 Score=34.43 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=48.5
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH----------hhhhHHHHHHHHHhHHHHHHH
Q 004861 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARR----------LSKDKAELKTLRQEKEEVERL 602 (726)
Q Consensus 540 ~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarR----------L~kdk~ELksLR~EkEE~erl 602 (726)
.+|..++.-++=++|+|++|+-.++..-++--++|+-|.+|- |+.-+.++|.+|+||||....
T Consensus 190 ~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~ 262 (596)
T KOG4360|consen 190 LTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEH 262 (596)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 355566666777999999999999999999999999888763 344455678888888876443
No 279
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.69 E-value=7.4e+02 Score=32.01 Aligned_cols=11 Identities=0% Similarity=0.096 Sum_probs=8.0
Q ss_pred cccccCCCCch
Q 004861 536 SLEHLVPQDKR 546 (726)
Q Consensus 536 ~~~~~Vp~D~K 546 (726)
--|.|+|+|+=
T Consensus 426 KnGvyisee~y 436 (1041)
T KOG0243|consen 426 KNGVYISEERY 436 (1041)
T ss_pred hCceEechHHH
Confidence 34688888865
No 280
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.14 E-value=2.4e+02 Score=28.16 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=42.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhH--------HHHHh-----HHHHHHHHHHHHHHHHHHHHHH
Q 004861 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ--------MKFQS-----WEKQKALFQEELVTEKRKVVQL 704 (726)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~l--------kk~qs-----WEkQK~lLQEELa~eK~Kl~~l 704 (726)
...+++..++||.||...--+......++.+-+++|-..| .++++ +.-+|.-..+|.+....||.++
T Consensus 53 ~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~ 132 (177)
T PF07798_consen 53 EYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQEL 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555444444444444444444443333 23333 4556777778888888888776
Q ss_pred HHHHHH-HHHHHHHHH
Q 004861 705 LQELDQ-AKALQEQLE 719 (726)
Q Consensus 705 ~qel~q-ak~~q~q~E 719 (726)
...+.. +..+.-+||
T Consensus 133 ~~ki~~ei~~lr~~iE 148 (177)
T PF07798_consen 133 NNKIDTEIANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 554432 234444555
No 281
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=47.14 E-value=6.3 Score=46.96 Aligned_cols=75 Identities=27% Similarity=0.332 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
+...||-||+..+-.|.. +.-+.....+=|+-|.-+.-..+|-..|+|+.+.--+.+..|.++|..+..+..|+|
T Consensus 292 ~a~~LrDElD~lR~~a~r-~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle 366 (713)
T PF05622_consen 292 EARALRDELDELREKADR-ADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLE 366 (713)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334444555544443332 122222333334444444455555555555555444455555555555444444443
No 282
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=47.11 E-value=3.4e+02 Score=31.22 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=8.6
Q ss_pred HHHhHHHHHHHHHHhhhhh
Q 004861 592 LRQEKEEVERLKKEKQILE 610 (726)
Q Consensus 592 LR~EkEE~erlkKeKq~lE 610 (726)
.+++.+++++.+++-+.+.
T Consensus 37 I~~~L~eAe~a~~ea~~~~ 55 (445)
T PRK13428 37 VRQQLAESATAADRLAEAD 55 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555554444433333
No 283
>KOG1821 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.34 E-value=44 Score=38.31 Aligned_cols=94 Identities=24% Similarity=0.248 Sum_probs=70.3
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHhhhhhhhh------hhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhH
Q 004861 604 KEKQILEENTMKKLSEMENALCKASGQVERA------NSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ 677 (726)
Q Consensus 604 KeKq~lEe~T~KrLsEmEnAL~kas~QlerA------ns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~l 677 (726)
.|||.+|+...|++.|--.|-.++-.---+. |.-+|.||+|--.|...|.-|--+..|-...-+|.
T Consensus 554 nekk~~eekkgKkh~e~sa~qan~~aaagngectetlnghaR~leaegkkltmdmkfaa~qdrehd~kaqee-------- 625 (662)
T KOG1821|consen 554 NEKKLMEEKKGKKHEEASAAQANAFAAAGNGECTETLNGHARELEAEGKKLTMDMKFAADQDREHDLKAQEE-------- 625 (662)
T ss_pred hHHHHHHHhcccchhhhhHHHHHHHHhccCCcchhhhcchhhhhhhccccccccchhhhhhhhhhhcchhhh--------
Confidence 4899999999999998766655544333333 77899999999999999988877777766655543
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 678 MKFQSWEKQKALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 678 kk~qsWEkQK~lLQEELa~eK~Kl~~l~ 705 (726)
.+...+|+.-.-|--+|.+-++|-..+.
T Consensus 626 rdikemekdlEsL~SaiSa~qdkeedfe 653 (662)
T KOG1821|consen 626 RDIKEMEKDLESLMSAISAMQDKEEDFE 653 (662)
T ss_pred hhHHHhhHHHHHHHHHHHhhhhhHHHHh
Confidence 3567788888888888888777655443
No 284
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=46.19 E-value=4.1e+02 Score=28.65 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHHHH-------HHHHHHHHhhhhHHHHHHHHHhH-HHHHHHHHHh
Q 004861 560 LHNQLHEWTEWANQ-------KVMQAARRLSKDKAELKTLRQEK-EEVERLKKEK 606 (726)
Q Consensus 560 Lq~qlqewtdWAnq-------KvmQaarRL~kdk~ELksLR~Ek-EE~erlkKeK 606 (726)
....|.+|.|-|.| -+.|++.-|.+--.+|+..|+.. ++...++++.
T Consensus 68 ~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l 122 (252)
T cd07675 68 FYNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYL 122 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666665554 56677777777778899999888 6666665533
No 285
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=46.10 E-value=56 Score=38.65 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=41.1
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 004861 675 KTQMKFQSWEKQKALFQEELVTE-------KRKVVQLLQELDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 675 k~lkk~qsWEkQK~lLQEELa~e-------K~Kl~~l~qel~qak~~q~q~E~~w~q~ 725 (726)
+.-+++..+|.++..|+++|++. ..++.++.+++++++...++++.+|-++
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l 624 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEA 624 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888653 2389999999999999999999999653
No 286
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.91 E-value=73 Score=28.90 Aligned_cols=69 Identities=30% Similarity=0.433 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHh--hhhhhhhhhhHHHHHHHHHHhhhh------------hhhhhhhHHHHHhhhHHHH
Q 004861 584 KDKAELKTLRQEKEEVERLKKEK--QILEENTMKKLSEMENALCKASGQ------------VERANSAVRRLEVENTALR 649 (726)
Q Consensus 584 kdk~ELksLR~EkEE~erlkKeK--q~lEe~T~KrLsEmEnAL~kas~Q------------lerAns~vrrLE~EnA~lR 649 (726)
....|+..||.+.+..+....-- ..|+.-+.+-|..+|.-|..+-.+ ++.-..-++.|+.+|..|+
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888877776442211 145566999999999888777554 4444445566666666666
Q ss_pred HHH
Q 004861 650 QEM 652 (726)
Q Consensus 650 ~Em 652 (726)
.++
T Consensus 96 ~~~ 98 (100)
T PF01486_consen 96 QKI 98 (100)
T ss_pred HHh
Confidence 554
No 287
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.48 E-value=2.9e+02 Score=26.63 Aligned_cols=79 Identities=18% Similarity=0.334 Sum_probs=61.2
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHH
Q 004861 599 VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM 678 (726)
Q Consensus 599 ~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lk 678 (726)
.++++..-+-|+ .++.+.|..+..+....-.+...++.++..+...+.|+.-.|.....-.++|.--.||...-+.
T Consensus 68 ~~~l~~~~~rL~----~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~ 143 (151)
T PF11559_consen 68 IERLQNDVERLK----EQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIE 143 (151)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 5677888888888888888888899999999999999999999999999999877777666555
Q ss_pred HHH
Q 004861 679 KFQ 681 (726)
Q Consensus 679 k~q 681 (726)
+|+
T Consensus 144 kLk 146 (151)
T PF11559_consen 144 KLK 146 (151)
T ss_pred HHH
Confidence 554
No 288
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=45.45 E-value=1.2e+02 Score=31.63 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhh---h----------------hhhhhHHHHHhhhHHHHHHHHHHHHh
Q 004861 598 EVERLKKEKQILEENTMKKLSEMENALCKASGQV---E----------------RANSAVRRLEVENTALRQEMEAAKLR 658 (726)
Q Consensus 598 E~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Ql---e----------------rAns~vrrLE~EnA~lR~EmEAaKL~ 658 (726)
|-+++++.|+.||+.=|+|.+.+.....-|-.|. . |=...|.-||.|++..|+++++....
T Consensus 24 Eh~~f~~Ak~rLe~~hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~q 103 (193)
T PF12925_consen 24 EHQRFKEAKERLEEKHRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQ 103 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888888777776665554432 2 33468889999999999999987765
Q ss_pred HHH
Q 004861 659 AAE 661 (726)
Q Consensus 659 A~E 661 (726)
-++
T Consensus 104 RV~ 106 (193)
T PF12925_consen 104 RVQ 106 (193)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 289
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=45.18 E-value=3.6e+02 Score=27.61 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHH
Q 004861 562 NQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVE 600 (726)
Q Consensus 562 ~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~e 600 (726)
...+.-..+...|.+|+-.....-..++..|..|+++.+
T Consensus 102 ~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~ 140 (189)
T PF10211_consen 102 TLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELE 140 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567777777775543333444444544444443
No 290
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=44.85 E-value=99 Score=33.71 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=28.7
Q ss_pred HHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhh
Q 004861 580 RRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVE 644 (726)
Q Consensus 580 rRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~E 644 (726)
.+|...+.+|...+.+.+-.++|.+..- -+...+.+.++.+.-+..+++.+.+.+..++..
T Consensus 113 ~~l~~a~~~l~~a~~~~~r~~~L~~~g~----is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (370)
T PRK11578 113 AQRQQAEAELKLARVTLSRQQRLAKTQA----VSQQDLDTAATELAVKQAQIGTIDAQIKRNQAS 173 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555543221 133445555555555555555444444333333
No 291
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.43 E-value=5e+02 Score=29.10 Aligned_cols=108 Identities=31% Similarity=0.421 Sum_probs=63.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhH----HHHHHHHHhHHHHHHHHHHhhhhhhhh-hhhHHHHHHHHHHhhhhh--
Q 004861 559 ELHNQLHEWTEWANQKVMQAARRLSKDK----AELKTLRQEKEEVERLKKEKQILEENT-MKKLSEMENALCKASGQV-- 631 (726)
Q Consensus 559 eLq~qlqewtdWAnqKvmQaarRL~kdk----~ELksLR~EkEE~erlkKeKq~lEe~T-~KrLsEmEnAL~kas~Ql-- 631 (726)
+|+++|..-.+|---|.|....+|.+++ .+|.-||.||-+.|.--.--|.+=.|+ -||.+.|+..=+.-..+|
T Consensus 124 ~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 124 ELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5666777777777677777777776543 466778887777665433333222332 255555554443333333
Q ss_pred ---------------------hhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHH
Q 004861 632 ---------------------ERANSAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (726)
Q Consensus 632 ---------------------erAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc 666 (726)
++..+-|+.|-.|.+-||++|-++...-++-.+..
T Consensus 204 ~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~ 259 (310)
T PF09755_consen 204 PVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQY 259 (310)
T ss_pred ccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777776666555554444
No 292
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.35 E-value=6.1e+02 Score=30.05 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH------HhhhhHH----------HHHHHHHhHHHHHHHHHHhhhhhhhhhhhH
Q 004861 554 IPRVRELHNQLHEWTEWANQKVMQAAR------RLSKDKA----------ELKTLRQEKEEVERLKKEKQILEENTMKKL 617 (726)
Q Consensus 554 v~rv~eLq~qlqewtdWAnqKvmQaar------RL~kdk~----------ELksLR~EkEE~erlkKeKq~lEe~T~KrL 617 (726)
|+++++|+..|+.-++=++.|+|-++. +|.+|-. --+..||.+++..+. =+.|+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Ki-------l~etr--- 413 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKI-------LEETR--- 413 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHH---
Confidence 688999999999888888877765542 3333221 223445555555444 22232
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHH----HHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 004861 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA----SCQEVSKREKKTQMKFQSWEKQKALFQEE 693 (726)
Q Consensus 618 sEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~----sc~ev~krekk~lkk~qsWEkQK~lLQEE 693 (726)
|+...+..-+++|+|.=+-+-.|=-.-+. -=.|++ .|.++.| .|.|++..-.. --..-+|-.-|+.+
T Consensus 414 -eLqkq~ns~se~L~Rsfavtdellf~sak---hddhvR-~aykllt~iH~nc~ei~E~i~~----tg~~~revrdlE~q 484 (521)
T KOG1937|consen 414 -ELQKQENSESEALNRSFAVTDELLFMSAK---HDDHVR-LAYKLLTRIHLNCMEILEMIRE----TGALKREVRDLESQ 484 (521)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHhc---cCHHHH-HHHHHHHHHHHHHHHHHHHHHH----cchHHHHHHHHHHH
Confidence 45666777889999988877754321110 001222 5666655 58888764332 23444566777777
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhh
Q 004861 694 LVTEKRK-----VVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 694 La~eK~K-----l~~l~qel~qak~~q~q~E~~w~ 723 (726)
|-.|+.| +-+|++.+..+.+..+++-.+.|
T Consensus 485 I~~E~~k~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 485 IYVEEQKQYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776655 55677777777776666655544
No 293
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=44.31 E-value=3e+02 Score=26.49 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh
Q 004861 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (726)
Q Consensus 619 EmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (726)
++++++..-.+|-+..+..+..|+.+++++++.||.-|+.
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~a 80 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQA 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999987764
No 294
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.09 E-value=5.4e+02 Score=31.24 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=61.7
Q ss_pred hhhhhhh------hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHH
Q 004861 607 QILEENT------MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKF 680 (726)
Q Consensus 607 q~lEe~T------~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~ 680 (726)
-.|+|+. .-|+.||||.|++.-..|.+..+---||+.+++.+..--.+.-+.--.=-.-.-|..-||...|-..
T Consensus 93 sLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseY 172 (772)
T KOG0999|consen 93 SLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEY 172 (772)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 4589999999999999999888888888888877654333222222222223445555666555555
Q ss_pred HhHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 004861 681 QSWEKQKALFQE----------ELVTEKRKVVQLLQELD 709 (726)
Q Consensus 681 qsWEkQK~lLQE----------ELa~eK~Kl~~l~qel~ 709 (726)
--.|.+.|-||. |...-|+-|..|.++.+
T Consensus 173 SELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 173 SELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 555555555554 33344455555554443
No 295
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=43.92 E-value=95 Score=29.24 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=26.3
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 668 EVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 668 ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel 708 (726)
=+-++|++-|++| |.+|++|+..++.+|.+|++.+
T Consensus 65 Y~r~~EkEqL~~L------k~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 65 YFRKKEKEQLKKL------KEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777777776 5678888888888888887765
No 296
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=43.91 E-value=74 Score=30.02 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=21.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHh
Q 004861 558 RELHNQLHEWTEWANQKVMQAARRL 582 (726)
Q Consensus 558 ~eLq~qlqewtdWAnqKvmQaarRL 582 (726)
.|++.++..|-+|.+++++-...+.
T Consensus 2 ~~~~a~i~~~~~~~~~~~~~~~~~~ 26 (142)
T cd03190 2 EELRSEIDELNEWIYDNINNGVYKA 26 (142)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4789999999999999999887654
No 297
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=43.33 E-value=4.5e+02 Score=28.28 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=75.8
Q ss_pred HHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhh-hhhhhHHHHHhhhHHHHHHHHH
Q 004861 576 MQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVE-RANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 576 mQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Qle-rAns~vrrLE~EnA~lR~EmEA 654 (726)
+.....++=|.+||..||+..+..+=+.+-.+.+.....-.|.+|+.-|..+..=.- .-+..+.+ |..-+..
T Consensus 141 l~~g~s~~v~lpel~~L~~~l~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~-------L~~~l~~ 213 (335)
T PF08429_consen 141 LEEGESFGVDLPELDQLRRRLEQLEWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDEKLMAE-------LQELLKQ 213 (335)
T ss_pred HHhcccCceeChhHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchHHHHH-------HHHHHHH
Confidence 344455566788888888888877777676776666555567888888875544221 22223333 3333333
Q ss_pred HHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 655 AKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 655 aKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
+.-+.. -|..| ++++.-.+..+..--++-.. |-..-..+.+|.+.+..++..+.+++.-+.
T Consensus 214 ~~~We~-ka~~~---L~~~~~~l~~Le~l~~~~~~----ipv~~~~~~~L~~~l~kak~w~~~i~~ll~ 274 (335)
T PF08429_consen 214 GEEWEE-KAKEL---LSRPRVSLEQLEALLEEAEN----IPVSLPSLDKLKDALQKAKEWLRQIEELLE 274 (335)
T ss_pred HHHHHH-HHHHH---HhcCCCCHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332221 12222 22555555555555444422 334445577778888888887777776543
No 298
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.63 E-value=78 Score=36.98 Aligned_cols=46 Identities=9% Similarity=0.240 Sum_probs=30.1
Q ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhh
Q 004861 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVER 633 (726)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Qler 633 (726)
|+..-..+|..||+|.++..+. .+.+-.||.+||..+..-..|++.
T Consensus 77 kasELEKqLaaLrqElq~~saq-------~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQ-------RGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445566667666655444 334467888999999888888853
No 299
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.61 E-value=2.6e+02 Score=34.65 Aligned_cols=54 Identities=33% Similarity=0.337 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH---hhhhHHHHH-HHHHhHHHHHHHHHHhhhhhhh
Q 004861 559 ELHNQLHEWTEWANQKVMQAARR---LSKDKAELK-TLRQEKEEVERLKKEKQILEEN 612 (726)
Q Consensus 559 eLq~qlqewtdWAnqKvmQaarR---L~kdk~ELk-sLR~EkEE~erlkKeKq~lEe~ 612 (726)
.|++...-..+=-+|++|++.++ |+.++...+ ++-+++|+.++++|++-+.|..
T Consensus 513 ~l~~~~~~k~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~ 570 (809)
T KOG0247|consen 513 ILQNNKSLKEKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYS 570 (809)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 46666666778889999999874 555555544 4678888888888877666643
No 300
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.55 E-value=95 Score=33.41 Aligned_cols=53 Identities=42% Similarity=0.587 Sum_probs=31.2
Q ss_pred HHHHHHHhHHH-HHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHH
Q 004861 588 ELKTLRQEKEE-VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQE 651 (726)
Q Consensus 588 ELksLR~EkEE-~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~E 651 (726)
+||-++-|.-| .+.+.|||..| +|+|.|+|.. ++-.|-...+||+||+.|..+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL----~~eleele~e-------~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEEL----LKELEELEAE-------YEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 33444443222 55555555443 6677777654 455556777899999887543
No 301
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.34 E-value=4.3e+02 Score=28.89 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=12.0
Q ss_pred HHhhhhhhhhhhhHHHHHhhhHHHHHHH
Q 004861 625 CKASGQVERANSAVRRLEVENTALRQEM 652 (726)
Q Consensus 625 ~kas~QlerAns~vrrLE~EnA~lR~Em 652 (726)
..+..||+.....+-.|+.+.+.|...+
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKI 199 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 302
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.12 E-value=4.3e+02 Score=28.64 Aligned_cols=45 Identities=29% Similarity=0.281 Sum_probs=33.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 004861 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 611 e~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa 655 (726)
++-.+-|.|.||.|.+-..=+++-++.--++|.|+...+.|.|+-
T Consensus 61 e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl 105 (246)
T KOG4657|consen 61 ENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVL 105 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888887777777777778888888888777664
No 303
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=42.00 E-value=1.5e+02 Score=34.37 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=29.6
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 670 SKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 670 ~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
.|++....+..+-|..+....-+++..+.+.- --.+|..-.|.|++.-|+
T Consensus 218 ~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~----Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 218 FKAERLNEEEDQYWREYNNFQRQLIEHQDELD----SLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHH----HHHHHHHHHHHHHHHHHh
Confidence 45667777788888887777766666665432 223334444455554443
No 304
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.62 E-value=2.1e+02 Score=33.53 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=15.8
Q ss_pred hHHHHHHhHHHHHHHHHHHH
Q 004861 547 DEIILKLIPRVRELHNQLHE 566 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqe 566 (726)
.+-|..||-++++|..+++.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~ 77 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAK 77 (472)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 34689999999999877653
No 305
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=41.41 E-value=7.5e+02 Score=30.25 Aligned_cols=111 Identities=25% Similarity=0.266 Sum_probs=55.1
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHH-HHHhhhhHHHHHHHHHhHHH--HHH---------------HHHHhhhhhh
Q 004861 550 ILKLIPRVRELHNQLHEWTEWANQKVMQA-ARRLSKDKAELKTLRQEKEE--VER---------------LKKEKQILEE 611 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvmQa-arRL~kdk~ELksLR~EkEE--~er---------------lkKeKq~lEe 611 (726)
+-+|.+++-++.+++.+ -|=.|+ .++|...++++..++.+.-+ +.- |+++.+.+-+
T Consensus 123 ~~~lk~~lee~~~el~~------~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~ 196 (629)
T KOG0963|consen 123 NEELKEELEEVNNELAD------LKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQE 196 (629)
T ss_pred HHHHHHHHHHHHHHHhh------hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555433 333333 45666666676666655443 111 1112221111
Q ss_pred h---hhhhHHHHHHHHHHhhhhhhhhhhh----HHHHHhhhHHHHHHHHHHHHhHHHhHHHH
Q 004861 612 N---TMKKLSEMENALCKASGQVERANSA----VRRLEVENTALRQEMEAAKLRAAESAASC 666 (726)
Q Consensus 612 ~---T~KrLsEmEnAL~kas~QlerAns~----vrrLE~EnA~lR~EmEAaKL~A~ES~~sc 666 (726)
- --|+++.|+.|+..+-.|+.-..+. |--.-.|...+-.|.|-|+-++..--+-|
T Consensus 197 q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~ 258 (629)
T KOG0963|consen 197 QLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREV 258 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2245566666666666666666665 33334444455556666655555444444
No 306
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.29 E-value=5.8e+02 Score=28.97 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=14.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
+...+.+-..||.|....+.....+.+.+++++
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444433
No 307
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.17 E-value=5.3e+02 Score=28.49 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=21.8
Q ss_pred hhhhhhhhhHHHHHhhhHHHHHHHHHHHH
Q 004861 629 GQVERANSAVRRLEVENTALRQEMEAAKL 657 (726)
Q Consensus 629 ~QlerAns~vrrLE~EnA~lR~EmEAaKL 657 (726)
.||+.+...-|.|+.+|-.|+-|.|+-|=
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Ke 80 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKE 80 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677778888888888888887664
No 308
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=40.94 E-value=96 Score=28.61 Aligned_cols=37 Identities=27% Similarity=0.169 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 684 EkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
.+|-++||+|....+..++..+.++..++..|+.-|.
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~ 65 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEEN 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 4567899999999999999999999999999888774
No 309
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=40.76 E-value=4.7e+02 Score=27.79 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004861 694 LVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 694 La~eK~Kl~~l~qel~qa 711 (726)
+...+..+.+++.+|+++
T Consensus 181 ~~~~~~~~~~~~~~l~~a 198 (327)
T TIGR02971 181 VDLAQAEVKSALEAVQQA 198 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 310
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=40.62 E-value=2e+02 Score=34.21 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 685 KQKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 685 kQK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
.+-..|+.|+.+.|.+|..+.++|.+.
T Consensus 219 ~e~d~lk~e~~~~~~~i~~~~~~l~~~ 245 (555)
T TIGR03545 219 EEFDKLKKEGKADKQKIKSAKNDLQND 245 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555554443
No 311
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=40.61 E-value=2.4e+02 Score=27.59 Aligned_cols=60 Identities=15% Similarity=0.372 Sum_probs=52.6
Q ss_pred HHhHHHHHHHHHHHHHhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 660 AESAASCQEVSKREKKTQ-MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 660 ~ES~~sc~ev~krekk~l-kk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
.+-.+.|.++.--++..| ++....|..-+.+-..+...+.+.+...+.|.+++++..++.
T Consensus 37 Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~ 97 (131)
T PF10158_consen 37 QEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLS 97 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888887777776 889999999999999999999999999999999999988875
No 312
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.59 E-value=2.3e+02 Score=32.19 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=28.6
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhh-hhhhHHHHHHHHHHhhhhhhhh
Q 004861 589 LKTLRQEKEEVERLKKEKQILEEN-TMKKLSEMENALCKASGQVERA 634 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~-T~KrLsEmEnAL~kas~QlerA 634 (726)
+|.+|...|++.+--+.+-. ..+ ...+|.++.+..++...|+|..
T Consensus 4 ik~ir~n~~~v~~~l~~R~~-~~~~~vd~i~~ld~~~r~~~~~~~~l 49 (418)
T TIGR00414 4 RKLLRNNPDLVKESLKARGL-SVDIDLEKLIALDDERKKLLSEIEEL 49 (418)
T ss_pred HHHHHhCHHHHHHHHHhcCC-ChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888777655444432 222 4677777777777777766553
No 313
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=40.11 E-value=1.4e+02 Score=31.66 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHh
Q 004861 639 RRLEVENTALRQEMEAAKLRAAES 662 (726)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES 662 (726)
-+++.|.+-||.+||++|++--+-
T Consensus 177 ~kId~Ev~~lk~qi~s~K~qt~qw 200 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQIESVKTQTIQW 200 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999986653
No 314
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=39.97 E-value=71 Score=37.65 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=41.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 676 TQMKFQSWEKQKALFQEELVTE-----K-RKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~e-----K-~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
.-+++..+|.++..|++++++- . .++.++.++++++++..++.+.+|-+
T Consensus 573 ~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 627 (635)
T PRK11147 573 LPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEE 627 (635)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888998888888753 1 28999999999999999999999965
No 315
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=39.91 E-value=6.7e+02 Score=29.30 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQAA 579 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQaa 579 (726)
-|-.+|++|..||..|..=- +..|.+
T Consensus 295 ~L~k~vQ~L~AQle~~R~q~--e~~q~~ 320 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRLQG--EAPQSA 320 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cCchhh
Confidence 46789999999999997643 444444
No 316
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.83 E-value=4.5e+02 Score=27.22 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004861 687 KALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 687 K~lLQEELa~eK~Kl~~l~ 705 (726)
-..|++||..-.+||..-.
T Consensus 173 ~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 173 VKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344555555444444433
No 317
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.82 E-value=1.5e+02 Score=29.63 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHH
Q 004861 573 QKVMQAARRLSKDKAELKTLRQEKE 597 (726)
Q Consensus 573 qKvmQaarRL~kdk~ELksLR~EkE 597 (726)
.+++.-.++|.+-.+++..++++-+
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 318
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.76 E-value=4.6e+02 Score=27.31 Aligned_cols=12 Identities=17% Similarity=0.374 Sum_probs=5.9
Q ss_pred HHHHHHHhHHHH
Q 004861 560 LHNQLHEWTEWA 571 (726)
Q Consensus 560 Lq~qlqewtdWA 571 (726)
|+..+..|.+|.
T Consensus 83 L~~~v~~l~~~~ 94 (239)
T cd07647 83 LREEAEKLEEFR 94 (239)
T ss_pred HHHHHHHHHHHH
Confidence 444455555554
No 319
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=39.63 E-value=6.2e+02 Score=28.78 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 693 ELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 693 ELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
.+..-...+.+++.++..++....+++.+
T Consensus 285 ~~~~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 285 QLAKVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555554443
No 320
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=39.45 E-value=1.2e+02 Score=36.38 Aligned_cols=67 Identities=30% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (726)
|.||-|||.=...-| -+-|-.|..|+--||-|.||+|- --.-+|.|...|.|||..
T Consensus 313 LLetKNALNiVKNDL---IakVDeL~~E~~vLrgElea~kq---------------------ak~Klee~i~elEEElk~ 368 (832)
T KOG2077|consen 313 LLETKNALNIVKNDL---IAKVDELTCEKDVLRGELEAVKQ---------------------AKLKLEEKIRELEEELKK 368 (832)
T ss_pred HHhhhhHHHHHHHHH---HHHHHhhccHHHHHhhHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 004861 697 EKRKVVQLLQE 707 (726)
Q Consensus 697 eK~Kl~~l~qe 707 (726)
-|+++-...|+
T Consensus 369 ~k~ea~~ar~~ 379 (832)
T KOG2077|consen 369 AKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHHHh
No 321
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.37 E-value=1.6e+02 Score=32.93 Aligned_cols=42 Identities=33% Similarity=0.380 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhhhhhh---hhhHHHHHHHHHHhhhhhhhhhhh
Q 004861 596 KEEVERLKKEKQILEENT---MKKLSEMENALCKASGQVERANSA 637 (726)
Q Consensus 596 kEE~erlkKeKq~lEe~T---~KrLsEmEnAL~kas~QlerAns~ 637 (726)
.||.++|.+|-|.|||.- ..||.|+....++.++.+++-.-.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr 47 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR 47 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888774 456777776666666666554443
No 322
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.20 E-value=1e+02 Score=32.33 Aligned_cols=97 Identities=25% Similarity=0.330 Sum_probs=61.3
Q ss_pred CcccccCCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 004861 535 TSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTM 614 (726)
Q Consensus 535 ~~~~~~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~ 614 (726)
.+++.=||.|+=|.++-.|- ++- +|...+..++.. |.....-.+.|+.|+.+++....+-+.. .|+
T Consensus 96 ~~ltiRVP~~~~~~~l~~l~----~~g-~v~~~~~~~~Dv----T~~y~D~~arl~~l~~~~~rl~~ll~ka-----~~~ 161 (262)
T PF14257_consen 96 ASLTIRVPADKFDSFLDELS----ELG-KVTSRNISSEDV----TEQYVDLEARLKNLEAEEERLLELLEKA-----KTV 161 (262)
T ss_pred EEEEEEECHHHHHHHHHHHh----ccC-ceeeeeccccch----HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCH
Confidence 35556677776666554433 343 444544444442 2333333456677777776665553322 266
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhh
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVEN 645 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~En 645 (726)
.-+.+.|+.|....+|+|+.+...+.|+...
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788999999999999999999888887543
No 323
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=39.09 E-value=1e+03 Score=31.20 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhHHH-hHHHHHHHHHHHHHhHHHHHhHHHHHH
Q 004861 648 LRQEMEAAKLRAAE-SAASCQEVSKREKKTQMKFQSWEKQKA 688 (726)
Q Consensus 648 lR~EmEAaKL~A~E-S~~sc~ev~krekk~lkk~qsWEkQK~ 688 (726)
.=.+||+......+ -+..|.+++.+=.++|-+...=+|||.
T Consensus 1264 slnqme~~tf~~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~ 1305 (1439)
T PF12252_consen 1264 SLNQMEVKTFEEQEKEIQQNLQLLDKLEKTLDDSDTAQKQKE 1305 (1439)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33578877777655 456899999999999999998888874
No 324
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=39.04 E-value=8.2e+02 Score=30.03 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=39.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
+..|..+...++++...++-..++...-|++.++.-...+..+ +.....|.+-. .|+..-.+|+-++.+.|.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L---~~~~~~l~~~~-~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDL---ESLEENLVEKK-KEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 4445555555555555566666666666666665555443333 33334455555 555666666666665543
No 325
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=39.03 E-value=1.5e+02 Score=29.76 Aligned_cols=76 Identities=25% Similarity=0.298 Sum_probs=42.5
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHH--HH
Q 004861 612 NTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK--AL 689 (726)
Q Consensus 612 ~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK--~l 689 (726)
.++.||..-=+++.+|++.|=++--.....+.+ ..+++-.+|+..+. . .+-||.|- ..
T Consensus 70 ~~~~~L~~As~~V~~At~~LV~av~~~~~~~~~----~~~~d~s~ls~~~~-------k---------~~eMe~Qv~iL~ 129 (152)
T PF01608_consen 70 KTQDRLEQASKAVKKATENLVAAVKAAIEQEEE----QEEVDFSKLSLHQA-------K---------RQEMEAQVRILK 129 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----HHH----------H-------H---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hcccchhhhcHHHH-------H---------HHHHHHHHHHHH
Confidence 478888888788888888776654444444433 44555555554443 2 23344442 34
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004861 690 FQEELVTEKRKVVQLLQE 707 (726)
Q Consensus 690 LQEELa~eK~Kl~~l~qe 707 (726)
|+-||..++.||.+|++.
T Consensus 130 lE~eLe~ar~kL~~lRk~ 147 (152)
T PF01608_consen 130 LEKELEKARKKLAELRKA 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667888889999888764
No 326
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.84 E-value=4.8e+02 Score=27.31 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004861 689 LFQEELVTEKRKVVQLLQELDQ 710 (726)
Q Consensus 689 lLQEELa~eK~Kl~~l~qel~q 710 (726)
.+++||+.-++.|.++.+...+
T Consensus 81 ~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 81 SQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333
No 327
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=38.82 E-value=1.7e+02 Score=31.17 Aligned_cols=94 Identities=15% Similarity=0.260 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH-------------HhHHHhHHHHHHHHHHHHHhHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK-------------LRAAESAASCQEVSKREKKTQMK 679 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK-------------L~A~ES~~sc~ev~krekk~lkk 679 (726)
.++|-.+|+.+|.- .+--.-..++.+=|.++||+=|.... +-.-=+...|.
T Consensus 147 ~~~rR~~i~e~I~~----~~~d~~de~~~~wE~aQ~rkg~~~~~~~~~~~~~~~ip~~tpLP~L~~~~------------ 210 (254)
T PF15458_consen 147 KRRRREEIEEAIND----DDDDSEDEERAEWEAAQLRKGMDGLSDEKDRYKPPPIPKITPLPSLSECL------------ 210 (254)
T ss_pred HHHHHHHHHHHHHh----cccccchhhHHHHHHHHHHhhccCCccchhccCCCCCcccCCCCchhHHH------------
Confidence 34566778888776 11112234555666677777666655 00111223343
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
......-+.|+...+....+|..|++|++.+...+++|....+
T Consensus 211 -~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 211 -ERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1122223455555666667777888888888888887776554
No 328
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=38.71 E-value=4.7e+02 Score=27.18 Aligned_cols=129 Identities=21% Similarity=0.218 Sum_probs=63.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHH
Q 004861 587 AELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (726)
Q Consensus 587 ~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc 666 (726)
.+++.|+++.+....- .....+...---+.++|..|..+..++..+......++.+...+.---+.+--.-++.....
T Consensus 52 ~~~~~l~~~l~~l~~~--~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l 129 (240)
T PF12795_consen 52 KEIRELQKELEALKSQ--DAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRL 129 (240)
T ss_pred HHHHHHHHHHHhhhcc--ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3445555544333111 23344555555566667666666666666555555555555544444444443333433444
Q ss_pred HHHHHHHHHhHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 667 QEVSKREKKTQMK--FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (726)
Q Consensus 667 ~ev~krekk~lkk--~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q 717 (726)
+++-.+=...--. -..=+-++.+|+-|++.-+.++..++++|.-...+++=
T Consensus 130 ~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L 182 (240)
T PF12795_consen 130 QEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQEL 182 (240)
T ss_pred HHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 4443322210000 11124555566666666666666666666555554443
No 329
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.57 E-value=4.3e+02 Score=26.66 Aligned_cols=64 Identities=27% Similarity=0.419 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHH
Q 004861 583 SKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (726)
Q Consensus 583 ~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR 649 (726)
.....|+..||.+.+..+.-++.++.+-.-.-++|.++|-.++.-...+. +.|..|+.+|-.|.
T Consensus 46 ~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~---~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 46 QEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQ---SQVEQLEEENRQLE 109 (158)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 35566777788777777665555555555566777777777766554332 23555555554443
No 330
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.45 E-value=4.9e+02 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~ 705 (726)
+-....||-.-++.|...-.++-..||
T Consensus 180 ~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334556666666666554444333333
No 331
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.34 E-value=52 Score=31.36 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa 655 (726)
.+|.+||.-|.....++..-...|..|..||+.||.|-+-=
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998775443
No 332
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=38.06 E-value=5.7e+02 Score=27.94 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=13.6
Q ss_pred hhHHHHHhhhHHHHHHHHHH
Q 004861 636 SAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 636 s~vrrLE~EnA~lR~EmEAa 655 (726)
..+..|+.+.++++.|+.+.
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777666543
No 333
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.02 E-value=62 Score=27.63 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
|+.|+||.|.+.+.. +--++.||.+||.+.|.-+
T Consensus 1 Ri~elEn~~~~~~~~-------i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 1 RIDELENELPRIESS-------INTVKKENEEISESVEKIE 34 (55)
T ss_pred CHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 789999999888874 5567788888888877644
No 334
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.91 E-value=96 Score=26.10 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=34.7
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
...+......|...|+.+|+..+.+..+|++++++.+.-.+-+|
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34566778888899999999999999999999988855555554
No 335
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=37.74 E-value=1.3e+02 Score=38.58 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=25.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~ 714 (726)
+++.||.....+.++.++.+.+|.+++++.++++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1123)
T PRK11448 178 ELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQE 213 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 466777777777777777777777777776665554
No 336
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=37.71 E-value=2.1e+02 Score=25.15 Aligned_cols=53 Identities=28% Similarity=0.463 Sum_probs=39.4
Q ss_pred hhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 629 ~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel 708 (726)
.+||+==....+|..||+.||.+. ..|..+++.|.+=...-++||..+-..|
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~----------------------------~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQE----------------------------KTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666667888999999999865 4578888888887777777777766555
Q ss_pred H
Q 004861 709 D 709 (726)
Q Consensus 709 ~ 709 (726)
-
T Consensus 59 k 59 (65)
T TIGR02449 59 K 59 (65)
T ss_pred h
Confidence 3
No 337
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.42 E-value=7.4e+02 Score=29.05 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=12.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 004861 559 ELHNQLHEWTEWANQKVMQAA 579 (726)
Q Consensus 559 eLq~qlqewtdWAnqKvmQaa 579 (726)
+|+.+-|---.|--|+|.|.|
T Consensus 21 ~laq~~k~~s~~~aq~~~~~a 41 (459)
T KOG0288|consen 21 ELAQCEKAQSRLSAQLVILRA 41 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445567778887754
No 338
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.26 E-value=4.1e+02 Score=26.07 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=36.8
Q ss_pred HHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 640 RLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 640 rLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
-|.-.+..|-.|+|.+--.-.++..-..++..+ ....|++-.-|..+..+--.|+..+...+..+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~-------ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVK-------AEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 355556666677777666666666655555554 44445555555555555555555555555444
No 339
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.11 E-value=1.8e+02 Score=28.48 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
+..-.+|..+||+||..+..-+..-.+.|.+-++-.+..+..|+
T Consensus 36 L~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 36 LAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888887777666666666665555555555554
No 340
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=37.05 E-value=2.5e+02 Score=26.37 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=12.0
Q ss_pred hhhhhhhHHHHHhhhHHHHHHH
Q 004861 631 VERANSAVRRLEVENTALRQEM 652 (726)
Q Consensus 631 lerAns~vrrLE~EnA~lR~Em 652 (726)
++.-+-.+.++|.++..|..|.
T Consensus 72 ie~L~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 72 IESLKDILYKREKEIQSLEAEL 93 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3334445666666666665554
No 341
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=5.8e+02 Score=27.68 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=16.7
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 623 ALCKASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 623 AL~kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
-|..+-.|+-+-|..+.+-+.+.+-|++|.-
T Consensus 66 ~l~etene~~~~neL~~ek~~~q~~ieqeik 96 (246)
T KOG4657|consen 66 DLRETENELVKVNELKTEKEARQMGIEQEIK 96 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555443
No 342
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=36.89 E-value=47 Score=29.99 Aligned_cols=52 Identities=33% Similarity=0.448 Sum_probs=37.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh-----------hhhhhhhhhhHHHHHhh
Q 004861 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA-----------SGQVERANSAVRRLEVE 644 (726)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka-----------s~QlerAns~vrrLE~E 644 (726)
+..|..||.|.+...- +.+.|+..|.++-.-|.++ .+-+||.|.+|.++|++
T Consensus 3 ~~~L~~L~~eL~~~~~-------ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~ 65 (85)
T PF14357_consen 3 QELLEKLHQELEQNPP-------LDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEAS 65 (85)
T ss_pred HHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHh
Confidence 4678888888886543 4788888888776666652 23478888888888875
No 343
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=36.51 E-value=53 Score=25.64 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=24.1
Q ss_pred HHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhcc
Q 004861 215 VCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248 (726)
Q Consensus 215 VafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am~ 248 (726)
|.-++.+. ..+...|+.||-.++-||..|+..-
T Consensus 4 i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 4 IAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33344444 3489999999999999999999864
No 344
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=36.42 E-value=2.6e+02 Score=28.25 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=28.7
Q ss_pred hhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHH
Q 004861 632 ERANSAVRRLEVENTALRQEMEAAKLRAAESAA 664 (726)
Q Consensus 632 erAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~ 664 (726)
+++.-.+.||-....+|.+|+-..+++..++..
T Consensus 66 ~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~ 98 (173)
T PF07445_consen 66 QQVAFLAEKLVAQIEALQRELATQSLRKKESKP 98 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCccc
Confidence 566778889999999999999999998888777
No 345
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.29 E-value=4.9e+02 Score=26.69 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=47.0
Q ss_pred HHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHH-------HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004861 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA-------SCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (726)
Q Consensus 624 L~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~-------sc~ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (726)
|..+..+||-..-..-.|+..|+.||.++|.++..= +..+ ...+-+. .+...|=..|..+...|..=+..
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N-~~L~~dl~klt~~~~~l~--~eL~~ke~~~~~ee~~~~~y~~~ 138 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKAN-EALQEDLQKLTQDWERLR--DELEQKEAEWREEEENFNQYLSS 138 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcc
Confidence 333445555555555556666666666666555321 1111 0000000 01112234677777778888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004861 697 EKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 697 eK~Kl~~l~qel~qak~~ 714 (726)
|-.+|..|=.++...+-.
T Consensus 139 eh~rll~LWr~v~~lRr~ 156 (182)
T PF15035_consen 139 EHSRLLSLWREVVALRRQ 156 (182)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 888888877777765543
No 346
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=36.17 E-value=1e+03 Score=30.38 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=74.8
Q ss_pred HHHHHHhhhhHHHHHHHHHhHHHHHHHHH-Hh---hhhhhhhhhhHHHHHHHHHHhhhhhhhhhh-------hHHHHHhh
Q 004861 576 MQAARRLSKDKAELKTLRQEKEEVERLKK-EK---QILEENTMKKLSEMENALCKASGQVERANS-------AVRRLEVE 644 (726)
Q Consensus 576 mQaarRL~kdk~ELksLR~EkEE~erlkK-eK---q~lEe~T~KrLsEmEnAL~kas~QlerAns-------~vrrLE~E 644 (726)
|-...++--+++-+.-..+-+.+.+-+-+ +| .+|-+.--.+|.|||+-|.|-+...+.|.- -.++|.+|
T Consensus 886 enkihK~egEltcaE~i~q~kdee~altdhekeasicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE 965 (1424)
T KOG4572|consen 886 ENKIHKKEGELTCAECIKQMKDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAE 965 (1424)
T ss_pred hhHHHHhhhhhHHHHHHHHcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHH
Confidence 33444555555555444444444444322 22 234445556799999999998888877643 34566655
Q ss_pred hHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 645 NTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 645 nA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
|-+ ..|+|-|.|...|. +--++++. ...-+|---|.-|....+.-+..+.++++++.+..+|.|+-++|
T Consensus 966 ~da-eLe~~~ael~eleq---------k~le~~eD-ea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQ 1034 (1424)
T KOG4572|consen 966 IDA-ELEKEFAELIELEQ---------KALECKED-EAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQ 1034 (1424)
T ss_pred HHH-HHHHHHHHHHHHHH---------HHHHHhhh-HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432 12233344433322 11222211 12223333455566666666777777777777777777777766
No 347
>PLN02320 seryl-tRNA synthetase
Probab=36.06 E-value=2.7e+02 Score=32.96 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 689 LFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 689 lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
.|.+|...-|++|..|.+++.+++.
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554443
No 348
>PLN02769 Probable galacturonosyltransferase
Probab=35.54 E-value=1.2e+02 Score=36.61 Aligned_cols=75 Identities=23% Similarity=0.207 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhhh---hhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh
Q 004861 584 KDKAELKTLRQEKEEVERLKKEKQI---LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (726)
Q Consensus 584 kdk~ELksLR~EkEE~erlkKeKq~---lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (726)
....=.+.||+-..|.||.=-|--. |..+--+++.+||..|.+|.....--++.++||..-.-....|+.+.|-+
T Consensus 205 ~~~~l~~el~~~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq 282 (629)
T PLN02769 205 GQEKLTRELKQNIQEHERVLSESITDADLPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQ 282 (629)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456778888888777443333 45555699999999999999998888888999987777777777655544
No 349
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=35.52 E-value=3e+02 Score=30.08 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhH
Q 004861 618 SEMENALCKASGQVERANSAV 638 (726)
Q Consensus 618 sEmEnAL~kas~QlerAns~v 638 (726)
.+++..|..+..+++.|+...
T Consensus 109 ~~~~~~l~~a~~~l~~a~~~~ 129 (370)
T PRK11578 109 MELRAQRQQAEAELKLARVTL 129 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544433
No 350
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=35.47 E-value=1.2e+03 Score=30.96 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=7.7
Q ss_pred hHHHHHhhhHHHHHHHH
Q 004861 637 AVRRLEVENTALRQEME 653 (726)
Q Consensus 637 ~vrrLE~EnA~lR~EmE 653 (726)
.++.||.+.-.|..+.-
T Consensus 879 ~~~qle~~~~~l~e~~~ 895 (1294)
T KOG0962|consen 879 RLQQLEEDIEELSEEIT 895 (1294)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 34445554444444433
No 351
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.44 E-value=3.2e+02 Score=24.24 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=20.7
Q ss_pred hhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 628 SGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 628 s~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
-..|.+|=-++.-|.+||.+|+.+-.+.+
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555566688888888888888766655
No 352
>PRK06991 ferredoxin; Provisional
Probab=35.44 E-value=1.4e+02 Score=32.35 Aligned_cols=33 Identities=15% Similarity=0.424 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHH
Q 004861 565 HEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERL 602 (726)
Q Consensus 565 qewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erl 602 (726)
..|..|..++.=++ +..-|.+..|.++|+.++.
T Consensus 142 ~~~~~~~~~~a~~a-----r~r~~~r~~Rl~~~~~~~~ 174 (270)
T PRK06991 142 TGWDAWSQAQADAA-----RARHDARQARLRREREAAE 174 (270)
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 67888865544433 5556666677777766654
No 353
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=35.13 E-value=4.1e+02 Score=25.40 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 004861 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (726)
Q Consensus 621 EnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~K 700 (726)
..+|.++...++.+......|+....+....+...-. .--+...++.|..=...|.+.|...+..
T Consensus 22 ~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~---------------~g~~~~~l~~~~~fl~~L~~~i~~q~~~ 86 (146)
T PRK07720 22 LGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQ---------------SGLSIQEIRHYQQFVTNLERTIDHYQLL 86 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666667777777777777666666544211 1122335566666666777777777777
Q ss_pred HHHHHHHHHHHHH
Q 004861 701 VVQLLQELDQAKA 713 (726)
Q Consensus 701 l~~l~qel~qak~ 713 (726)
|.++.+++++.++
T Consensus 87 v~~~~~~ve~~r~ 99 (146)
T PRK07720 87 VMQAREQMNRKQQ 99 (146)
T ss_pred HHHHHHHHHHHHH
Confidence 7666666665543
No 354
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.01 E-value=4.4e+02 Score=30.82 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=59.9
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 004861 545 KRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENAL 624 (726)
Q Consensus 545 ~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL 624 (726)
.++|-++....+..+|+.|.. -++.=.-+...+-.-..-|-.+.+|++...+-.+.+++.+...| |++-+
T Consensus 303 d~~Et~~v~lke~~~Le~q~e-----~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~-----md~~~ 372 (446)
T KOG4438|consen 303 DSLETKVVELKEILELEDQIE-----LNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAM-----MDDNI 372 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHH
Confidence 357888888999999988876 23333333333333334455566677777666666666555444 33444
Q ss_pred HHhhhhhhhhhhhHHHHHhhhHHHHH
Q 004861 625 CKASGQVERANSAVRRLEVENTALRQ 650 (726)
Q Consensus 625 ~kas~QlerAns~vrrLE~EnA~lR~ 650 (726)
.+..-==+.-|+.+.++|.+|.++..
T Consensus 373 ~~~n~V~~kr~a~~~kie~~~~~ik~ 398 (446)
T KOG4438|consen 373 EKYNVVRQKRNAKVKKIEEKNEEIKK 398 (446)
T ss_pred HHhcccchhhccHHHHHHHHHHHHHH
Confidence 44433335678888999988888765
No 355
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=34.51 E-value=3.2e+02 Score=31.05 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=19.6
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 004861 549 IILKLIPRVRELHNQLHEWTEWANQKV 575 (726)
Q Consensus 549 milkLv~rv~eLq~qlqewtdWAnqKv 575 (726)
.+-.+..++.+|++.+..-.=|.+++-
T Consensus 8 ~~~~~~~~~~~le~~~~~p~~w~d~~~ 34 (360)
T TIGR00019 8 KLESLLERYEELEALLSDPEVISDQDK 34 (360)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCHHH
Confidence 344567788899999988777866643
No 356
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.41 E-value=4.4e+02 Score=32.13 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR 649 (726)
+.+..|++-+.+..-.|......|-.|+.+.++++
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555556666666666665
No 357
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.40 E-value=4.1e+02 Score=29.40 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=60.3
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhh
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQV 631 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Ql 631 (726)
+|=+.+.|++..+ .|+|..---|=+||+-|. =+++-||+.--.|||. |.++...++...+++
T Consensus 81 ~lk~~l~evEeky--------rkAMv~naQLDNek~~l~------yqvd~Lkd~lee~eE~----~~~~~re~~eK~~el 142 (302)
T PF09738_consen 81 DLKDSLAEVEEKY--------RKAMVSNAQLDNEKSALM------YQVDLLKDKLEELEET----LAQLQREYREKIREL 142 (302)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHhhhchHHHHHH------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3344556666655 589999999999998763 2333343333333443 556666677788889
Q ss_pred hhhhhhHHHHHhhhHHHHHHHHH
Q 004861 632 ERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 632 erAns~vrrLE~EnA~lR~EmEA 654 (726)
+|-.-....|..|.++||.++..
T Consensus 143 Er~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 143 ERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988863
No 358
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=34.00 E-value=7.9e+02 Score=28.38 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=30.5
Q ss_pred HHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhh
Q 004861 577 QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKAS 628 (726)
Q Consensus 577 QaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas 628 (726)
|-+-|...|-...++-| ...|+|-+-..|.||.|.=.+|=.+|.-|.
T Consensus 198 ~~aak~~aetkI~~~qR-----~~el~Ka~~dveV~~~~aEA~lAyelqaak 244 (428)
T KOG2668|consen 198 QNAAKIDAETKIASAQR-----TKELIKAATDVEVNTNKAEADLAYELQAAK 244 (428)
T ss_pred HhHHhhhhhhhHHHhhh-----hHHHHHhhhhhHhhhhHHHHHHHHHHHHHH
Confidence 44444555544444444 455677777889999998888877775443
No 359
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=33.92 E-value=6.3e+02 Score=27.25 Aligned_cols=115 Identities=21% Similarity=0.263 Sum_probs=59.5
Q ss_pred HHHHHHhhhh--HHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 576 MQAARRLSKD--KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 576 mQaarRL~kd--k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
||+--|.-.. ..++++|-- ||.+.||+.- +-++|+|+|+|+-++.--.+++..-+ .|+.--.-.+
T Consensus 22 ~q~~skstgt~s~~~q~~l~n--ee~~eLk~qn----kli~K~l~ei~~~qd~reK~~~~I~s---sL~eTtkdf~---- 88 (230)
T PF03904_consen 22 TQTNSKSTGTQSQKTQMSLEN--EEIQELKRQN----KLIIKYLSEIEEKQDIREKNLKEIKS---SLEETTKDFI---- 88 (230)
T ss_pred hhhhhhccCCCcHHHHHHHhH--HHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----
Confidence 4544444333 566666644 4777886653 34799999999877654444443333 2221000000
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 654 AAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (726)
Q Consensus 654 AaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~q 710 (726)
..+.-...-.+++++.+-+..+. |.=+..+|.|+...++.+.+..||+.+
T Consensus 89 ---~~~~k~~~dF~~~Lq~~Lk~V~t----de~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 89 ---DKTEKVHNDFQDILQDELKDVDT----DELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhch----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223334455555555444422 344556777787766655555555433
No 360
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=33.62 E-value=5.5e+02 Score=29.95 Aligned_cols=104 Identities=15% Similarity=0.292 Sum_probs=70.6
Q ss_pred HHHHhHHHHHHHHHHH-----HhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 004861 550 ILKLIPRVRELHNQLH-----EWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENAL 624 (726)
Q Consensus 550 ilkLv~rv~eLq~qlq-----ewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL 624 (726)
.-.|+..-.++=|+|- +-..+|.+-|-+|-.||.+-+..|-.+|.+.--+.=.+. =+..+.-+..+|..|
T Consensus 221 a~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~-----a~~~~~lI~~Le~qL 295 (434)
T PRK15178 221 AQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKET-----ITAIYQLIAGFETQL 295 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH-----HHHHHHHHHHHHHHH
Confidence 3334444444444443 345789999999999999999999888876543311100 234677778888888
Q ss_pred HHhhhhhhhh-------hhhHHHHHhhhHHHHHHHHH--HHHh
Q 004861 625 CKASGQVERA-------NSAVRRLEVENTALRQEMEA--AKLR 658 (726)
Q Consensus 625 ~kas~QlerA-------ns~vrrLE~EnA~lR~EmEA--aKL~ 658 (726)
-.+..|++.. +-.|..|+.+++.|+++++. +|+-
T Consensus 296 a~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 296 AEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777733 56788999999999999865 4553
No 361
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.52 E-value=3.6e+02 Score=28.73 Aligned_cols=78 Identities=27% Similarity=0.302 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH---HhhhhhhhhhhhHHHHHhhhHHHH
Q 004861 573 QKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC---KASGQVERANSAVRRLEVENTALR 649 (726)
Q Consensus 573 qKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~---kas~QlerAns~vrrLE~EnA~lR 649 (726)
+++|-.+..|.+-.+-... =.||....+.+...||+.-.++-+++|.|-. .-..|.|.=+----||-.|++.|+
T Consensus 130 ~~~~~~~~~lk~~~~~~~~---~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK---LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHHhhhcccc---hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5555555544433332222 1222333333444444444444333333322 223455555555556666666666
Q ss_pred HHHH
Q 004861 650 QEME 653 (726)
Q Consensus 650 ~EmE 653 (726)
.+.|
T Consensus 207 ~~i~ 210 (216)
T KOG1962|consen 207 EQIE 210 (216)
T ss_pred HHHh
Confidence 5543
No 362
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=33.44 E-value=1.5e+02 Score=36.00 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=60.0
Q ss_pred HHhhhhHHHHHHHHHhHHHHHHHHHHh---hhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 580 RRLSKDKAELKTLRQEKEEVERLKKEK---QILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 580 rRL~kdk~ELksLR~EkEE~erlkKeK---q~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
-++.....=.+.||+-..|.||.=-|- .-|+-+.-+|+..||..|.+|.....-.++.++||..-.-....|+.++|
T Consensus 216 ak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k 295 (657)
T PLN02910 216 AKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALK 295 (657)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556666666666653322 22455667899999999999999999999999999998888888888888
Q ss_pred HhHH
Q 004861 657 LRAA 660 (726)
Q Consensus 657 L~A~ 660 (726)
.+++
T Consensus 296 ~qs~ 299 (657)
T PLN02910 296 KKSA 299 (657)
T ss_pred HHHH
Confidence 7754
No 363
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=33.32 E-value=4.3e+02 Score=25.14 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=6.0
Q ss_pred HHHHHhHHHHH
Q 004861 671 KREKKTQMKFQ 681 (726)
Q Consensus 671 krekk~lkk~q 681 (726)
.++.|.+.+|.
T Consensus 105 ~~~~k~lEkL~ 115 (147)
T PRK05689 105 KQRLEALETLQ 115 (147)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 364
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=32.78 E-value=5.7e+02 Score=26.33 Aligned_cols=147 Identities=19% Similarity=0.246 Sum_probs=89.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHH-HHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 004861 548 EIILKLIPRVRELHNQLHEWTEWANQKVM-QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (726)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvm-QaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (726)
+.+..+.-+.+.+++++++..+|.+.-++ .--.++-.|+..+..+.++.+. |....-+.-.|+.+|+-+.=+|
T Consensus 58 ~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~k------e~k~~~~~l~K~~se~~Kl~KK 131 (219)
T PF08397_consen 58 DALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEK------EYKRKRDELKKAESELKKLRKK 131 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhc
Confidence 56788999999999999999999999888 4567788888888877766543 2222222233445555444445
Q ss_pred hhh-hh---hhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004861 627 ASG-QV---ERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVV 702 (726)
Q Consensus 627 as~-Ql---erAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~ 702 (726)
+.+ .- -.....++.+..+. .|||..- ..+|.+++.-|++--=-| -+++..+++.|+.-.-+=+.
T Consensus 132 ~~kgk~~~~~~~~~~~~~v~~~~----~ele~~~------~~~~r~al~EERrRyc~l--v~~~~~~~~~~~~~~~~~~~ 199 (219)
T PF08397_consen 132 SRKGKDDQKYELKEALQDVTERQ----SELEEFE------KQSLREALLEERRRYCFL--VEKHCSVVKSELAFHNEAVE 199 (219)
T ss_dssp CCCCTSCHHHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccccHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 443 11 01111233333333 3333211 345677777776643333 57888888888887766566
Q ss_pred HHHHHHHHHH
Q 004861 703 QLLQELDQAK 712 (726)
Q Consensus 703 ~l~qel~qak 712 (726)
-|++.+..-.
T Consensus 200 ~L~~~~~~w~ 209 (219)
T PF08397_consen 200 HLQEKLDDWQ 209 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhHHHH
Confidence 7776665543
No 365
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=32.52 E-value=7.1e+02 Score=27.42 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHH-------hHHHHHHHHHHhhhhhhhhhhhHHHH
Q 004861 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQ-------EKEEVERLKKEKQILEENTMKKLSEM 620 (726)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~-------EkEE~erlkKeKq~lEe~T~KrLsEm 620 (726)
|.-+.=+-+.+||+.|+ +.-|.-|+...+..+....+.+.. ..+....--++...-=.-=..|..|.
T Consensus 155 E~~~~~~~k~keLE~Ql------~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~ef 228 (309)
T PF09728_consen 155 EEHFEKLLKQKELEVQL------AEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEF 228 (309)
T ss_pred HHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 004861 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQ 691 (726)
Q Consensus 621 EnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQ 691 (726)
+..|.|.+.--+.-..-.-++.-.+-.|.+|-.+-|...-.|..+..+....-....+.+..+.+|...|+
T Consensus 229 q~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 229 QDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 366
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.45 E-value=2.7e+02 Score=28.97 Aligned_cols=63 Identities=30% Similarity=0.360 Sum_probs=37.0
Q ss_pred HHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHH
Q 004861 592 LRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (726)
Q Consensus 592 LR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~E 661 (726)
|..-|++++.+-+.++..-..+-.+|..+|.--...- ..+..+|..+..|++|.+.-|..+.+
T Consensus 152 l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v-------~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 152 LAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELV-------SKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555655555544433 35666777777777777666665543
No 367
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.35 E-value=2.3e+02 Score=25.08 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=44.1
Q ss_pred HHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhh--hhhhH------HHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHH
Q 004861 578 AARRLSKDKAELKTLRQEKEEVERLKKEKQILEEN--TMKKL------SEMENALCKASGQVERANSAVRRLEVENTALR 649 (726)
Q Consensus 578 aarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~--T~KrL------sEmEnAL~kas~QlerAns~vrrLE~EnA~lR 649 (726)
...+|..-...+..|..++.+++...+|-..+++. +.+.+ ...+.++..-..+++.....+-+|+.+...+.
T Consensus 10 l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 10 LNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566777778888888888888888887 22221 12333344444444444455555555555555
Q ss_pred HHHHHH
Q 004861 650 QEMEAA 655 (726)
Q Consensus 650 ~EmEAa 655 (726)
.+|+..
T Consensus 90 ~~l~~~ 95 (106)
T PF01920_consen 90 KKLKEL 95 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 368
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.33 E-value=5.8e+02 Score=26.34 Aligned_cols=6 Identities=17% Similarity=0.595 Sum_probs=2.3
Q ss_pred HHHHHH
Q 004861 689 LFQEEL 694 (726)
Q Consensus 689 lLQEEL 694 (726)
+|+++|
T Consensus 179 iL~k~l 184 (205)
T PRK06231 179 LIKKKV 184 (205)
T ss_pred HHHhhC
Confidence 333333
No 369
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=32.24 E-value=5.2e+02 Score=27.46 Aligned_cols=101 Identities=26% Similarity=0.308 Sum_probs=71.5
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh---
Q 004861 582 LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR--- 658 (726)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~--- 658 (726)
|-.-..|+.+|++.++.-+++-..-|.+...+-.++++++.....+..++..+... |.++++.+..||++.-=.
T Consensus 70 le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~---l~~~~~k~~~~l~~l~~~v~~ 146 (256)
T PF14932_consen 70 LEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKE---LSAECSKLNNELNQLLGEVSK 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33344566677777777777777888888889999999999998888888877665 777777777777764211
Q ss_pred -HHHhHH----------------HHHHHHHHHHHhHHHHHhHHH
Q 004861 659 -AAESAA----------------SCQEVSKREKKTQMKFQSWEK 685 (726)
Q Consensus 659 -A~ES~~----------------sc~ev~krekk~lkk~qsWEk 685 (726)
+.+.+. .+-.-...+..+.+-|-.|=+
T Consensus 147 l~~~~~~~~~~~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~k 190 (256)
T PF14932_consen 147 LASELAHAHSGQQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTK 190 (256)
T ss_pred HHHHHHHhcccccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 222222 233566788888888888866
No 370
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.63 E-value=2.2e+02 Score=26.75 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 682 sWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
.++.+...|++.+..-.+++.+|++-++..+...+..++|.
T Consensus 77 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 77 QLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777888888888887777777777664
No 371
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.60 E-value=2.7e+02 Score=30.45 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 668 EVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 668 ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
++-+..+...+.+++.-.|-..+|..+..-+.++.++++++.+.++-+++++.+
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555444444444444433
No 372
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.49 E-value=9.3e+02 Score=28.43 Aligned_cols=113 Identities=22% Similarity=0.307 Sum_probs=68.0
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh----HHHHHHHHHhHHHHHH-HHHHhhhhhhhhhhhHHHHHHHHHHh
Q 004861 553 LIPRVRELHNQLHEWTEWANQKVMQAARRLSKD----KAELKTLRQEKEEVER-LKKEKQILEENTMKKLSEMENALCKA 627 (726)
Q Consensus 553 Lv~rv~eLq~qlqewtdWAnqKvmQaarRL~kd----k~ELksLR~EkEE~er-lkKeKq~lEe~T~KrLsEmEnAL~ka 627 (726)
|-|.--+|+-.+..-.|+--+|.|-..++|-.| ..-|+-||-|+=+.+- |..|...|=..--||+..+|-.-+-.
T Consensus 141 Lr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~L 220 (552)
T KOG2129|consen 141 LRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYL 220 (552)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334566666666678889999999999765 4556788887765542 33344455555667777666543332
Q ss_pred hhhhhh---------------------hh---hhHHHHHhhhHHHHHHHHHHHHhHHHhHHH
Q 004861 628 SGQVER---------------------AN---SAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (726)
Q Consensus 628 s~Qler---------------------An---s~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (726)
..-+|. |. .-++.|..|.--||...-+|.+++.|-...
T Consensus 221 q~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~q 282 (552)
T KOG2129|consen 221 QKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQ 282 (552)
T ss_pred HHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 11 235666777777777777777666664443
No 373
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=31.44 E-value=1e+03 Score=28.95 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHH
Q 004861 644 ENTALRQEMEAAKLRAAESAASCQEV 669 (726)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~ev 669 (726)
|..++..+-++||..-.|..+..-|+
T Consensus 471 e~~~~Q~~~e~~~~e~~e~~~al~el 496 (607)
T KOG0240|consen 471 ELSEIQEENEAAKDEVKEVLTALEEL 496 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666666655555544444
No 374
>PRK10865 protein disaggregation chaperone; Provisional
Probab=31.28 E-value=5e+02 Score=32.37 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=12.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHh
Q 004861 638 VRRLEVENTALRQEMEAAKLR 658 (726)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~ 658 (726)
+.+||..+..|+.|+++++..
T Consensus 412 L~rLer~l~~L~~E~e~l~~e 432 (857)
T PRK10865 412 LDRLDRRIIQLKLEQQALMKE 432 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666666666544
No 375
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=31.16 E-value=5.3e+02 Score=29.06 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 694 LVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 694 La~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
|-.-|.||-+||+.|..++...+.+
T Consensus 189 LNeKK~KIR~lq~~L~~~~~~~~~~ 213 (342)
T PF06632_consen 189 LNEKKAKIRELQRLLASAKEEEKSP 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhhccccch
Confidence 3456899999999999988755543
No 376
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=31.00 E-value=9.3e+02 Score=28.29 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHH
Q 004861 563 QLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKE 597 (726)
Q Consensus 563 qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkE 597 (726)
+..+++.=+|.+.-|-.++-+.=.+++-.||.|-+
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ 44 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESR 44 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666766666666666666665543
No 377
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.95 E-value=2e+02 Score=29.02 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhhhh---hhhhhHHHHHHHHHHhh
Q 004861 598 EVERLKKEKQILEE---NTMKKLSEMENALCKAS 628 (726)
Q Consensus 598 E~erlkKeKq~lEe---~T~KrLsEmEnAL~kas 628 (726)
.+++|+++-..|++ .+++.|.++++.|..+-
T Consensus 30 ~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 30 RIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 37899999999999887
No 378
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.74 E-value=5.8e+02 Score=28.58 Aligned_cols=57 Identities=23% Similarity=0.492 Sum_probs=31.2
Q ss_pred CchhHHHHHHhHHH--HHHHHHHHHhHHHHHHHHHHHH-HHhhhhHHHH-HHHHHhHHHHHH
Q 004861 544 DKRDEIILKLIPRV--RELHNQLHEWTEWANQKVMQAA-RRLSKDKAEL-KTLRQEKEEVER 601 (726)
Q Consensus 544 D~KDEmilkLv~rv--~eLq~qlqewtdWAnqKvmQaa-rRL~kdk~EL-ksLR~EkEE~er 601 (726)
.+.++||..||.-+ .+.+.+|+.|.. .|+..++.- .|+..|...+ +.+..|+++.++
T Consensus 100 E~vEdii~nL~~~~d~~~te~~l~~y~~-~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~ 160 (309)
T TIGR00570 100 EEVEDIVYNLTNNIDLENTKKKIETYQK-ENKDVIQKNKEKSTREQEELEEALEFEKEEEEQ 160 (309)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHH-HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 36789999999864 456677777655 344444433 3333333333 234444444433
No 379
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.70 E-value=5e+02 Score=25.05 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=53.7
Q ss_pred HHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 640 RLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMK-FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 640 rLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk-~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
.++..++-|-.+||-.|.+--| +.++++.|+. +++-+.|..-+..-+..-+.||..+.+.|+.-|....++
T Consensus 13 el~n~La~Le~slE~~K~S~~e--------L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l 84 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGE--------LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLEL 84 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777765444 3556666654 467788888888888888999999999998866666588
Q ss_pred Hhhh
Q 004861 719 EVFF 722 (726)
Q Consensus 719 E~~w 722 (726)
|++.
T Consensus 85 ~~r~ 88 (107)
T PF09304_consen 85 ESRL 88 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 380
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.70 E-value=3.7e+02 Score=23.60 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHH
Q 004861 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (726)
Q Consensus 620 mEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~E 661 (726)
||-.+.--...+|++..-+...+.+|..|+.|.+.+=-+..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445666666666666777777777777666544444
No 381
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=30.64 E-value=1.3e+03 Score=29.70 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=33.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 639 RRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (726)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~q 706 (726)
-++|.|-|++++||+-.|.---|+ +.+.-|.-|+++..|+..-+..+.++.+
T Consensus 1055 ~kie~efAa~eaemdeik~~~~ed----------------rakqkei~k~L~ehelenLrnEieklnd 1106 (1424)
T KOG4572|consen 1055 AKIEDEFAAIEAEMDEIKDGKCED----------------RAKQKEIDKILKEHELENLRNEIEKLND 1106 (1424)
T ss_pred hhHHHHHHHHHhhhhhhhhhhhhh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999887654444 4455555666666555544444444443
No 382
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=30.20 E-value=2.2e+02 Score=32.31 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=29.1
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHH----HHHHHhhhhHHHHHHHHHhHHHHHHH
Q 004861 551 LKLIPRVRELHNQLHEWTEWANQKVM----QAARRLSKDKAELKTLRQEKEEVERL 602 (726)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKvm----QaarRL~kdk~ELksLR~EkEE~erl 602 (726)
-.+..|..+|+.+|.+-.=|.+++-+ +.-.+|..-...++.|++..++++.+
T Consensus 26 ~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~ 81 (367)
T PRK00578 26 DALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEEL 81 (367)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999887777666443 33333333333444444444444333
No 383
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=30.10 E-value=6.5e+02 Score=26.16 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=17.7
Q ss_pred hhhhhhhHHHH---HHHHHHhhhhhhhhhhhHHHHHhhh
Q 004861 610 EENTMKKLSEM---ENALCKASGQVERANSAVRRLEVEN 645 (726)
Q Consensus 610 Ee~T~KrLsEm---EnAL~kas~QlerAns~vrrLE~En 645 (726)
=+|+-+|-..| ..+|.++-.+++.++..+-+++-+.
T Consensus 74 ~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~ 112 (204)
T PF10368_consen 74 LKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIEDEK 112 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT----------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 34455554444 4689999999999999998888663
No 384
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=30.06 E-value=3.3e+02 Score=30.98 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=18.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
.++.....+..|.++|...+.++.+|++++++.
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555556666666666666666655543
No 385
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=29.83 E-value=3.9e+02 Score=32.53 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHhHHH-----------HHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 004861 582 LSKDKAELKTLRQEKEE-----------VERLKKEKQILEENTMKKLSEMENALCK 626 (726)
Q Consensus 582 L~kdk~ELksLR~EkEE-----------~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (726)
.+.+...|.++..=.|| ...+-|+-|.|..-.+.++.|||..+..
T Consensus 292 ~s~~~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~ 347 (632)
T PF14817_consen 292 VSDESQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSG 347 (632)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44555555555443333 2345567778888888888888887433
No 386
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.81 E-value=1.9e+02 Score=30.97 Aligned_cols=91 Identities=18% Similarity=0.307 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH-H-----------------------HhHH------HhHHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA-K-----------------------LRAA------ESAASC 666 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa-K-----------------------L~A~------ES~~sc 666 (726)
|.+++..|..+..+++.....+.+||...+.+-.+..+. + ++.. ....+.
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Confidence 456677777777777777777788877777776653332 1 1111 133455
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 667 ~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
+.|...-..-. ..--.-|.+|+...++++..|++|++..+.
T Consensus 81 LpIVtsQRDRF------R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 81 LPIVTSQRDRF------RQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554433322 122344666666666666666666665544
No 387
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=29.77 E-value=3.1e+02 Score=33.23 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=23.1
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
.|+-|.||-+-+...|-+|-.-.+.-|+|..|+++++.-.|+
T Consensus 77 ~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEe 118 (907)
T KOG2264|consen 77 IGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEE 118 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344445555555555555544455556666667666655544
No 388
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=29.66 E-value=1.3e+02 Score=30.44 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=14.4
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 636 SAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 636 s~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
+.+..++...+.++.|+..+...-.+-+.....+...=.+.-+++..=+.....|+.|++.-+.+|..+..+|.
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELK 140 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666555555555444444445555555555555555555555555555444
No 389
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=29.63 E-value=2e+02 Score=26.86 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHh--hhhhhhhhhhHHHHHhhhHHHHHHH
Q 004861 613 TMKKLSEMENALCKA--SGQVERANSAVRRLEVENTALRQEM 652 (726)
Q Consensus 613 T~KrLsEmEnAL~ka--s~QlerAns~vrrLE~EnA~lR~Em 652 (726)
.-.||+.+|..|+.. ..+|-+-+-.+-+++++...+++++
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 567899999998887 6655555555555555555554444
No 390
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=29.57 E-value=3.4e+02 Score=31.72 Aligned_cols=108 Identities=32% Similarity=0.377 Sum_probs=64.1
Q ss_pred ccCCCCchhHHHHH-----HhHHHHHHHHHHHHhHHHHHHHHH--HHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhh
Q 004861 539 HLVPQDKRDEIILK-----LIPRVRELHNQLHEWTEWANQKVM--QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEE 611 (726)
Q Consensus 539 ~~Vp~D~KDEmilk-----Lv~rv~eLq~qlqewtdWAnqKvm--QaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe 611 (726)
.|.|+|.-.--|+. || |.+|==--||++|+|-||-|. |.-.-+-+|- |.-=|||-||.|.+ =--|++
T Consensus 101 ~w~~ddpDi~~~l~gvnSGLv-rAKDSItSlKekt~~vnQHVq~LQseCsvlsEn--LErrrQEaeELEgy---CsqLk~ 174 (558)
T PF15358_consen 101 PWAPDDPDITELLEGVNSGLV-RAKDSITSLKEKTSRVNQHVQTLQSECSVLSEN--LERRRQEAEELEGY---CSQLKE 174 (558)
T ss_pred CCCCCCccHHHHHhhhcccce-ecccchhhHHHhhHHHHHHHHHHHHHhHHHHHH--HHhhhhHHHHHHHH---HHHHHH
Confidence 46666654433332 55 888888899999999999874 4444444443 44457888887754 222345
Q ss_pred hhhhhHHHHHHHHHHh-----------------hhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 612 NTMKKLSEMENALCKA-----------------SGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 612 ~T~KrLsEmEnAL~ka-----------------s~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
|-+|=..-.|.|=-|+ .+||. .-.-||-|+|--+|.+-|||
T Consensus 175 nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLq--dE~prrqe~e~qELeqklea 232 (558)
T PF15358_consen 175 NCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQ--DETPRRQEAEWQELEQKLEA 232 (558)
T ss_pred HHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhc--ccCcchhhhhHHHHHHHHhh
Confidence 5555444444443332 23332 12335667777788887777
No 391
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=29.52 E-value=38 Score=31.47 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhcCCchHHHHHHHhhccccccCCcc-hhHHHHHHHHhhcc
Q 004861 126 ESQLEELVLSNLDAIFKSAIKKIVACGYMEEVATKAVLRSGLCYGSKDT-VSNIVDNTLAFLRS 188 (726)
Q Consensus 126 e~~Lr~~LL~~Ih~fY~~ALarLP~~g~re~~~~rALL~AG~CYGplDP-VSNII~NTIwyl~~ 188 (726)
+.--|.+|-|+|.++-+-||.||...+= .+ .-.|.||-...- .--.|.|+|||.-.
T Consensus 16 AKrHRK~LsDnIqgitKpaIRRlARr~G-----Vk--Ri~G~~yeE~~~~~k~fl~n~i~~A~~ 72 (103)
T KOG3467|consen 16 AKRHRKVLRDNIQGITKPAIRRLARRGG-----VK--RISGLIYEETRGVLKVFLENVIRDAVT 72 (103)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHhcC-----cc--hhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678999999999999999975431 11 246899987444 34468899998654
No 392
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.35 E-value=2.8e+02 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 685 KQKALFQEELVTEKRKVVQLLQELDQ 710 (726)
Q Consensus 685 kQK~lLQEELa~eK~Kl~~l~qel~q 710 (726)
.+|..++..|...|..+..|.++|.+
T Consensus 54 s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 54 SERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56677788888888888888877754
No 393
>COG5283 Phage-related tail protein [Function unknown]
Probab=29.20 E-value=1.5e+03 Score=30.00 Aligned_cols=38 Identities=29% Similarity=0.412 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhhhhhhhh-------hhhHHHHHhhhHHHHHHH
Q 004861 615 KKLSEMENALCKASGQVERA-------NSAVRRLEVENTALRQEM 652 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerA-------ns~vrrLE~EnA~lR~Em 652 (726)
+++...|+.++++|+|+++| ...+++++.+++.+-+=|
T Consensus 99 ~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~m 143 (1213)
T COG5283 99 AQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSM 143 (1213)
T ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 46788999999999999988 567888888888877755
No 394
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.02 E-value=1.4e+03 Score=29.66 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=76.5
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHH
Q 004861 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSE 619 (726)
Q Consensus 540 ~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsE 619 (726)
-+|--.|.|+= |=+||+||...|+- +-.|=..|++-|+-|-+=|=+.+++.. +----|-...+
T Consensus 218 ~l~saskte~e--Lr~QvrdLtEkLet-----------lR~kR~EDk~Kl~ElekmkiqleqlqE----fkSkim~qqa~ 280 (1243)
T KOG0971|consen 218 PLPSASKTEEE--LRAQVRDLTEKLET-----------LRLKRAEDKAKLKELEKMKIQLEQLQE----FKSKIMEQQAD 280 (1243)
T ss_pred CCCccccchHH--HHHHHHHHHHHHHH-----------HHhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34444666664 55566665544432 122345566666666555555554411 11125677888
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh---HHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004861 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR---AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (726)
Q Consensus 620 mEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~---A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa 695 (726)
++..|..+....+.|-.+--++-.|.+.+.--||-+-|. |-|=|.+.|.-..- .-.|+..+|..--.|.+|+.
T Consensus 281 Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~---lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 281 LQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEA---LKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 888898888888888888888887777777666665442 33333333321111 11244455555555555544
No 395
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.95 E-value=4.3e+02 Score=29.12 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=8.8
Q ss_pred HhHHHHHHHHHHHHH
Q 004861 681 QSWEKQKALFQEELV 695 (726)
Q Consensus 681 qsWEkQK~lLQEELa 695 (726)
..|..+...|.+.+.
T Consensus 294 ~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 294 ERWSEQIEELEEQLK 308 (344)
T ss_dssp HCCHCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc
Confidence 357766666655543
No 396
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=28.90 E-value=4.4e+02 Score=23.87 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=20.0
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhh
Q 004861 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERAN 635 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAn 635 (726)
++-+|...|.+..--+-+. .......++-++....+.+..++|..+
T Consensus 4 ik~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr 49 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELR 49 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555433333222 233344445555544444444444333
No 397
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.44 E-value=2.8e+02 Score=33.01 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa 695 (726)
.+.+++.....+-.+|.. +.+..++++..|+-+-....+....+...+.=.+..+.++.--.+-.-|..||.
T Consensus 172 ~~k~~~~~w~~~~~~Lp~--------~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 172 SLKAMQQKWKKRKKDLPN--------KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHhcCC--------chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555542 223334444444443334445555555555444444555555555667888999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004861 696 TEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 696 ~eK~Kl~~l~qel~qak~ 713 (726)
..++.+.+..++|.+|.+
T Consensus 244 ~~~~~~~~~~~~lk~ap~ 261 (555)
T TIGR03545 244 NDKKQLKADLAELKKAPQ 261 (555)
T ss_pred HhHHHHHHHHHHHHhccH
Confidence 999888888888877754
No 398
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=28.37 E-value=1.1e+02 Score=28.10 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=33.9
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHh
Q 004861 623 ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES 662 (726)
Q Consensus 623 AL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES 662 (726)
-+.+-+.||...|+.|..++.+...+|..-++||-.|...
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RA 64 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRA 64 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999999999877654
No 399
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=28.35 E-value=8.5e+02 Score=27.00 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=47.7
Q ss_pred HHHHhHHHHHHHHHH----hh------hhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHH---HHHHH--
Q 004861 591 TLRQEKEEVERLKKE----KQ------ILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ---EMEAA-- 655 (726)
Q Consensus 591 sLR~EkEE~erlkKe----Kq------~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~---EmEAa-- 655 (726)
.|.+|..|-+++... +- .+=.+-+.++.+++..|..|+.==..-...++..+.-...|.. +++++
T Consensus 100 ~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~v~~k~~~~~~~l~lL~~~~~~l~~~~P 179 (353)
T cd09236 100 ILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENFVP 179 (353)
T ss_pred HHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCC
Confidence 466666666666542 21 1222346788888888887765222222222222322233311 11111
Q ss_pred HHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004861 656 KLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (726)
Q Consensus 656 KL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEEL 694 (726)
+.....-..+--.+..+=+..|+++...++|+..+-++|
T Consensus 180 s~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~L 218 (353)
T cd09236 180 SSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERA 218 (353)
T ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000001222344445556666666666666666665
No 400
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.11 E-value=1.2e+03 Score=28.86 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=4.8
Q ss_pred HHHHhHHHHHHH
Q 004861 591 TLRQEKEEVERL 602 (726)
Q Consensus 591 sLR~EkEE~erl 602 (726)
..|+..++++|.
T Consensus 92 ~~r~~~~~~dr~ 103 (716)
T KOG4593|consen 92 LARNYEAEVDRK 103 (716)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 401
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=28.09 E-value=4.3e+02 Score=29.96 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 004861 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQ 577 (726)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvmQ 577 (726)
+.+-.+..++.+|++++..-.=|-+++-.|
T Consensus 6 ~~~e~~~~~~~~le~~~~~~~~w~d~~~~~ 35 (359)
T PRK00591 6 DKLEALEERYEELEALLSDPEVISDQKRFR 35 (359)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 345566778899999998888886664433
No 402
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=27.94 E-value=1e+03 Score=27.84 Aligned_cols=120 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHH
Q 004861 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (726)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (726)
++.|..+|-|.+-++.- +.+.|..-.++..+++.+.-.-.-.+.+.+++|+++--|.-.-...-+.
T Consensus 80 ~~qlr~~rtel~~a~~~--------------k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q 145 (499)
T COG4372 80 RPQLRALRTELGTAQGE--------------KRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQ 145 (499)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 666 CQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 666 c~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
.+.+--|-+..-..-+-.|-|+--|+-+-+.-.--..||.-+....+..+++||
T Consensus 146 ~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ie 199 (499)
T COG4372 146 AQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIE 199 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 403
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.86 E-value=4.1e+02 Score=27.18 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=10.0
Q ss_pred HHHhhhHHHHHHHHHHHHhHHHhHH
Q 004861 640 RLEVENTALRQEMEAAKLRAAESAA 664 (726)
Q Consensus 640 rLE~EnA~lR~EmEAaKL~A~ES~~ 664 (726)
.++.+...|.++.+..+-.-.+-..
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~ 90 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEE 90 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333
No 404
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=27.85 E-value=8.6e+02 Score=26.88 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004861 682 SWEKQKALFQEELVTEKRK 700 (726)
Q Consensus 682 sWEkQK~lLQEELa~eK~K 700 (726)
--+.|.+..|++|+..+-.
T Consensus 103 q~~~q~aqY~D~LaRkR~~ 121 (276)
T PF12037_consen 103 QQKQQRAQYEDELARKRYQ 121 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665543
No 405
>PLN02678 seryl-tRNA synthetase
Probab=27.76 E-value=4.3e+02 Score=30.71 Aligned_cols=50 Identities=4% Similarity=0.169 Sum_probs=25.9
Q ss_pred HHHHHH----hHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 004861 589 LKTLRQ----EKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVR 639 (726)
Q Consensus 589 LksLR~----EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vr 639 (726)
++-+|. ..|++.+--+-+. +..+..-+|.++....++...++|..++.--
T Consensus 4 ~k~ir~~~~~~~~~v~~~l~~R~-~~~~~id~il~ld~~~r~l~~~~e~lr~erN 57 (448)
T PLN02678 4 INLFREEKGGDPELIRESQRRRF-ASVELVDEVIALDKEWRQRQFELDSLRKEFN 57 (448)
T ss_pred HHHHhcccccCHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566774 4444433333332 2223456677777777776666655444333
No 406
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.36 E-value=2.5e+02 Score=24.07 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=7.0
Q ss_pred HHHHHHHHHHh
Q 004861 617 LSEMENALCKA 627 (726)
Q Consensus 617 LsEmEnAL~ka 627 (726)
|..||..++.+
T Consensus 41 l~qMe~E~~~~ 51 (79)
T PF05008_consen 41 LKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHCTS
T ss_pred HHHHHHHHHhC
Confidence 66666666655
No 407
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.31 E-value=1.1e+03 Score=27.94 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=53.2
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhh----------hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHh
Q 004861 613 TMKKLSEMENALCKASGQVERANS----------AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns----------~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qs 682 (726)
..+.|.++....+....+++|-+. .++.|+.+...|....+...-.-.+.....-++..+=++..+.+..
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ 390 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE 390 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665432 4677777777777777776666666666666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004861 683 WEKQKALFQEELVTEKR 699 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~ 699 (726)
-+++-..+.+.|..-+.
T Consensus 391 ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 391 IEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544433
No 408
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.06 E-value=1.1e+03 Score=27.88 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004861 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARR 581 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvmQaarR 581 (726)
.+-||+|+-.|+.|+++----|-+.+-.-+||
T Consensus 252 nlqLvhR~h~LEEq~reqElraeE~l~Ee~rr 283 (502)
T KOG0982|consen 252 NLQLVHRYHMLEEQRREQELRAEESLSEEERR 283 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 35677888888888777776777766666655
No 409
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=26.90 E-value=6.9e+02 Score=29.46 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004861 683 WEKQKALFQEELVTEKRKVVQL 704 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~Kl~~l 704 (726)
|..+|..|++-|..+=+++..+
T Consensus 159 ~~~lr~~L~~~L~~~w~~lv~~ 180 (593)
T PF06248_consen 159 YSELRENLQYQLSEEWERLVQW 180 (593)
T ss_pred HHHHHHHHHHHHHHHHHhheee
Confidence 6666666666666665555444
No 410
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.85 E-value=6.8e+02 Score=25.37 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=75.1
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHH-HHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHH
Q 004861 609 LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQE-MEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK 687 (726)
Q Consensus 609 lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~E-mEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK 687 (726)
.=|++++-+..+.+.|.....+|...-..|-+||..--..|.. ||.+|=-..=|..-..++-.+-...+.+|..+..+-
T Consensus 21 I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E 100 (159)
T PF05384_consen 21 IAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRERE 100 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777777777777777777777655544443 233333322234445555556666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 688 ALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
.-|+.---.-...|.++..-++.|..+-.||-+
T Consensus 101 ~qLr~rRD~LErrl~~l~~tierAE~l~sqi~v 133 (159)
T PF05384_consen 101 KQLRERRDELERRLRNLEETIERAENLVSQIGV 133 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666677788888888888888777753
No 411
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=26.64 E-value=9.3e+02 Score=26.90 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 004861 701 VVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 701 l~~l~qel~qak~~q~q~E~~w 722 (726)
+.+++.++.+++....+++..|
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 412
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=26.40 E-value=1.9e+02 Score=32.47 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=26.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 678 kk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
.++...|..-.-|++.+..-.+.+..+.+++.+.+...+.+|.+-|
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3555555555666666666666666666665555555555565544
No 413
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=26.39 E-value=1.2e+02 Score=24.44 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=25.9
Q ss_pred HHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004861 215 VCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (726)
Q Consensus 215 VafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am 247 (726)
+-.|+.+||.--...-=--|-.|+.||..||+.
T Consensus 5 idiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~ 37 (39)
T PF03474_consen 5 IDILTRVFPHQKRSVLELILQRCNGDVVQAIEQ 37 (39)
T ss_pred HHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHH
Confidence 457888999877665555567899999999974
No 414
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.39 E-value=1.1e+03 Score=27.69 Aligned_cols=58 Identities=24% Similarity=0.191 Sum_probs=24.0
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILE 610 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lE 610 (726)
.+..+.++++.+++++..=. +...+-...|.-.+.||+.+.=.-.|-+.|..+.+.|.
T Consensus 165 ~~~~~~~~~~~~L~~l~~~~-~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~ 222 (563)
T TIGR00634 165 ELYQAWLKARQQLKDRQQKE-QELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLS 222 (563)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHh
Confidence 33444444444444442211 11222333344444455544444444444544444443
No 415
>PRK11032 hypothetical protein; Provisional
Probab=26.37 E-value=4.7e+02 Score=26.61 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=45.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH--HHHHhHHHHHHH
Q 004861 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELK--TLRQEKEEVERL 602 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELk--sLR~EkEE~erl 602 (726)
++||-.|..++++-+..++.|-+.|.+ .++++..|.+|-.+|- -||-..+++-+.
T Consensus 9 ~~ll~~v~~~l~~~~~~l~~~ve~a~~-~~~~~~elT~dEl~lv~~ylkRDL~ef~~~ 65 (160)
T PRK11032 9 RELVASLTERLRNGERDIDALVESARK-RVDAAGELTRDEVDLITRAVRRDLEEFARS 65 (160)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999899999999876 5688999998888775 478888887663
No 416
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=26.33 E-value=8.3e+02 Score=26.21 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=5.0
Q ss_pred CCCC-cCcccC
Q 004861 524 NCGY-AGILSD 533 (726)
Q Consensus 524 ~~~~-~~i~~D 533 (726)
.+|| ++.-..
T Consensus 122 i~D~vAd~ra~ 132 (319)
T PF02601_consen 122 IADFVADLRAP 132 (319)
T ss_pred HHHHHHHhhCC
Confidence 4555 555444
No 417
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.30 E-value=1.1e+03 Score=27.76 Aligned_cols=74 Identities=27% Similarity=0.440 Sum_probs=40.8
Q ss_pred chhHHHH-HHhHHHHHHHHHHHHhHHHHHHHHHHHH-HHhhhhH-HHHHHHHHhHHHHHHHHHHhh-hhhhhhhhhHHHH
Q 004861 545 KRDEIIL-KLIPRVRELHNQLHEWTEWANQKVMQAA-RRLSKDK-AELKTLRQEKEEVERLKKEKQ-ILEENTMKKLSEM 620 (726)
Q Consensus 545 ~KDEmil-kLv~rv~eLq~qlqewtdWAnqKvmQaa-rRL~kdk-~ELksLR~EkEE~erlkKeKq-~lEe~T~KrLsEm 620 (726)
+-+|.|- .|+..++.|+++-.-- |. |-..- -=|-+++ .-|+.||.||=+.|++-..-| .+=.--|+++..+
T Consensus 96 qeeEfisntLlkkiqal~keketl---a~--~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Kl 170 (552)
T KOG2129|consen 96 QEEEFISNTLLKKIQALFKEKETL---AT--VYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKL 170 (552)
T ss_pred hHHHHHHHHHHHHHHHhhcccccc---ch--hhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457777 7888887776642110 00 00000 0112222 247889988888887755555 3333367777777
Q ss_pred HHH
Q 004861 621 ENA 623 (726)
Q Consensus 621 EnA 623 (726)
||.
T Consensus 171 en~ 173 (552)
T KOG2129|consen 171 ENK 173 (552)
T ss_pred hhh
Confidence 774
No 418
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.25 E-value=4.4e+02 Score=30.08 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=25.2
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhh
Q 004861 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANS 636 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns 636 (726)
++-+|...+++.+--+-+. +. ....+|.++.+..++...|+|..++
T Consensus 4 ~k~ir~n~~~v~~~l~~R~-~~-~~vd~i~~ld~~~r~l~~~~~~lr~ 49 (425)
T PRK05431 4 IKLIRENPEAVKEALAKRG-FP-LDVDELLELDEERRELQTELEELQA 49 (425)
T ss_pred HHHHHhCHHHHHHHHHhcC-Cc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566766666655444442 22 2355666666666666665554433
No 419
>PRK10865 protein disaggregation chaperone; Provisional
Probab=26.22 E-value=4.8e+02 Score=32.56 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=8.6
Q ss_pred ccCCCCchhHHHHHH
Q 004861 539 HLVPQDKRDEIILKL 553 (726)
Q Consensus 539 ~~Vp~D~KDEmilkL 553 (726)
.+|++-..++.+..|
T Consensus 336 i~v~eP~~~~~~~iL 350 (857)
T PRK10865 336 VFVAEPSVEDTIAIL 350 (857)
T ss_pred EEeCCCCHHHHHHHH
Confidence 456666666655543
No 420
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=26.20 E-value=1.4e+02 Score=27.21 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 689 LFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 689 lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
++..||...|.||+++|..|.....+..+.|
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888889999999888887777777766
No 421
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=26.11 E-value=7.6e+02 Score=25.68 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 665 SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 665 sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
+.-++-.+=.+..-.++.|+.+-.-++.+|.....-...+++.+..+.....+|+.+...
T Consensus 79 s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 79 SLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666667778999999999999999999999999999999999999999877553
No 422
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=26.04 E-value=2e+02 Score=31.59 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHhHH
Q 004861 551 LKLIPRVRELHNQLHEWTE 569 (726)
Q Consensus 551 lkLv~rv~eLq~qlqewtd 569 (726)
..|-.+..++..+++.+.|
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666
No 423
>PTZ00121 MAEBL; Provisional
Probab=25.97 E-value=1.9e+03 Score=30.17 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=5.7
Q ss_pred CCCCcCcccC
Q 004861 524 NCGYAGILSD 533 (726)
Q Consensus 524 ~~~~~~i~~D 533 (726)
.++|-++.||
T Consensus 1073 ~~s~~~~~~~ 1082 (2084)
T PTZ00121 1073 KPSYKDFDFD 1082 (2084)
T ss_pred ccccccccch
Confidence 3455566666
No 424
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=25.89 E-value=4.2e+02 Score=25.37 Aligned_cols=67 Identities=24% Similarity=0.279 Sum_probs=41.7
Q ss_pred HhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 642 EVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW---EKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (726)
Q Consensus 642 E~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsW---EkQK~lLQEELa~eK~Kl~~l~qel~qak~~ 714 (726)
+.+..+|..+++.||-+.-+.=-.= =.+.|..++.+ ++-+...|++|..-++||.+.+.||.+|+..
T Consensus 23 ~~K~~~Ie~qI~~Ak~~gN~~rv~G------Le~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~ 92 (115)
T PF06476_consen 23 EAKEQAIEKQIEYAKAHGNQHRVAG------LEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAK 92 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777776543322111 12233333333 5566777888888888888888888877653
No 425
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.80 E-value=4.3e+02 Score=25.88 Aligned_cols=83 Identities=20% Similarity=0.400 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH--------hhhhHHHH--------HHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh
Q 004861 567 WTEWANQKVMQAARR--------LSKDKAEL--------KTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQ 630 (726)
Q Consensus 567 wtdWAnqKvmQaarR--------L~kdk~EL--------ksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Q 630 (726)
|+-|.=-=+|=+||| ++|.+..+ +-|-+..+.+..--.+-..+-+.|++...|+-.-+....+.
T Consensus 25 wKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~d 104 (126)
T PF07889_consen 25 WKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDD 104 (126)
T ss_pred ecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred hhhhhhhHHHHHhhhHHHH
Q 004861 631 VERANSAVRRLEVENTALR 649 (726)
Q Consensus 631 lerAns~vrrLE~EnA~lR 649 (726)
|+.-+..|+-||..+.+|.
T Consensus 105 v~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 105 VDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHh
No 426
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=25.75 E-value=1.6e+02 Score=30.53 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=6.3
Q ss_pred HHHHHHHHHhHHHHHH
Q 004861 586 KAELKTLRQEKEEVER 601 (726)
Q Consensus 586 k~ELksLR~EkEE~er 601 (726)
+.+|..++.+.+..+.
T Consensus 77 ~~~~~~~~~~~~r~~~ 92 (322)
T TIGR01730 77 EAQLELAQRSFERAER 92 (322)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444333333
No 427
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=25.73 E-value=7.6e+02 Score=25.53 Aligned_cols=101 Identities=28% Similarity=0.349 Sum_probs=59.9
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHH-HhhhhHHHHHHHHHhHHHHH----HHHHHhhhhhhhhhhhHHHHHHHHH
Q 004861 551 LKLIPRVRELHNQLHEWTEWANQKVMQAAR-RLSKDKAELKTLRQEKEEVE----RLKKEKQILEENTMKKLSEMENALC 625 (726)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKvmQaar-RL~kdk~ELksLR~EkEE~e----rlkKeKq~lEe~T~KrLsEmEnAL~ 625 (726)
|.||..+++=-.+|+. ++=++.|.|+... .--.-...|+.++.|+++.+ .+.|+|+.|. ++..|+.++|..|+
T Consensus 26 L~lIksLKeei~emkk-~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~-~~k~rl~~~ek~l~ 103 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKK-KEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ-NLKARLKELEKELK 103 (201)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3455555554444444 4445555555433 22222334555565555543 3455666664 57778888888888
Q ss_pred HhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 626 KASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 626 kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
...-+-+--.-.+.+|+.|.-+|..--+
T Consensus 104 ~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 104 DLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777777777777777666665554
No 428
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=25.70 E-value=5.5e+02 Score=30.53 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=31.6
Q ss_pred HhHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 675 KTQMKFQSWEKQ-KALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 675 k~lkk~qsWEkQ-K~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
++|.|...+|.+ +.++|.-+..||.---.+||.|+--.++.+|+|...+|
T Consensus 545 eslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L~~~sk~reqaeqs~~~ 595 (641)
T KOG3915|consen 545 ESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEALEFESKRREQAEQSLKQ 595 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhcccc
Confidence 455565555544 55667777777766666777776666666666655443
No 429
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=25.60 E-value=4.1e+02 Score=31.35 Aligned_cols=58 Identities=28% Similarity=0.344 Sum_probs=34.4
Q ss_pred ccCCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHH
Q 004861 539 HLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLS 618 (726)
Q Consensus 539 ~~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLs 618 (726)
.-.|-|-|.--+-.|--||.||---+.--++ ...-||+.||+|.| ||-||.--.
T Consensus 560 k~e~~~~~k~s~delr~qi~el~~ive~lk~--------------~~~kel~kl~~dle------------eek~mr~~l 613 (627)
T KOG4348|consen 560 KVETDDVKKNSLDELRAQIIELLCIVEALKK--------------DHGKELEKLRKDLE------------EEKTMRSNL 613 (627)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH------------HHHHHHhhh
Confidence 3345565655555666666666543332221 12357888888877 666777667
Q ss_pred HHHH
Q 004861 619 EMEN 622 (726)
Q Consensus 619 EmEn 622 (726)
|||-
T Consensus 614 emei 617 (627)
T KOG4348|consen 614 EMEI 617 (627)
T ss_pred HhhH
Confidence 7773
No 430
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=25.58 E-value=5.6e+02 Score=31.06 Aligned_cols=41 Identities=20% Similarity=0.099 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 666 CQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (726)
Q Consensus 666 c~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~q 706 (726)
.....+-.+..++++.---+||..|+.|++..++-.+|+.-
T Consensus 386 ~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rm 426 (645)
T KOG0681|consen 386 LISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRM 426 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhh
Confidence 44444444445555555566777777777777766666543
No 431
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=25.54 E-value=3.7e+02 Score=27.85 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.4
Q ss_pred ccCCCC
Q 004861 539 HLVPQD 544 (726)
Q Consensus 539 ~~Vp~D 544 (726)
..|.+.
T Consensus 46 ~~V~kG 51 (322)
T TIGR01730 46 QKVKKG 51 (322)
T ss_pred CEEcCC
Confidence 444433
No 432
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.46 E-value=8.2e+02 Score=25.82 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=22.7
Q ss_pred hhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhH
Q 004861 627 ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (726)
Q Consensus 627 as~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (726)
--..||-+.-.-.+|-.|+..||.+|-..+ +|++-+
T Consensus 27 L~~~ve~~ee~na~L~~e~~~L~~q~~s~Q-qal~~a 62 (193)
T PF14662_consen 27 LQRSVETAEEGNAQLAEEITDLRKQLKSLQ-QALQKA 62 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 334556666666677777777777777664 455444
No 433
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=25.45 E-value=93 Score=31.15 Aligned_cols=38 Identities=3% Similarity=0.022 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhcC
Q 004861 688 ALFQEELVTEKRKVVQLLQ--ELDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~~l~q--el~qak~~q~q~E~~w~q~ 725 (726)
.+|++||..-+.+|..... .|-.+|+.|..+|.|.+++
T Consensus 37 ~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L 76 (160)
T PRK06342 37 KALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYL 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHH
Confidence 4566777666666555532 2333677777777777653
No 434
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=24.99 E-value=3.9e+02 Score=30.27 Aligned_cols=68 Identities=28% Similarity=0.213 Sum_probs=50.3
Q ss_pred hhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHH---------HHhHHHHHhHHHHHHHHHHHHHHH
Q 004861 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKRE---------KKTQMKFQSWEKQKALFQEELVTE 697 (726)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~kre---------kk~lkk~qsWEkQK~lLQEELa~e 697 (726)
||-.--.--|+||.|.-.|..--++-|..-.||..++++-+||- .|---.+.-||.|-.+-|||-..+
T Consensus 229 Qv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~c~~kvevd~eK~~~~i~q~eeq~rkr~eE~~k~ 305 (410)
T KOG4715|consen 229 QVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKMAAEIAQAEEQARKRQEEREKE 305 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHhHhHHHhh
Confidence 33333344578888887777777888888999999999999883 444455667888888888876544
No 435
>PF01517 HDV_ag: Hepatitis delta virus delta antigen; InterPro: IPR002506 The Hepatitis delta virus (HDV) encodes a single protein, the hepatitis delta antigen (HDAg). The central region of this protein has been shown to bind RNA []. Several interactions are also mediated by a coiled-coil region at the N terminus of the protein [].; GO: 0003723 RNA binding, 0042025 host cell nucleus; PDB: 1A92_D 1BY0_A.
Probab=24.94 E-value=1.2e+02 Score=31.07 Aligned_cols=45 Identities=38% Similarity=0.447 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHH
Q 004861 587 AELKTLRQEKEEVERLKKEKQILE--ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTA 647 (726)
Q Consensus 587 ~ELksLR~EkEE~erlkKeKq~lE--e~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~ 647 (726)
.|-+.-|..+|++ || .+++|++.|+|.-|+|+.. .+.+||-+|-=
T Consensus 4 se~kk~r~gre~~---------le~wv~~rk~~eeler~lrk~~k-------~ikkled~npw 50 (194)
T PF01517_consen 4 SESKKNRGGREEI---------LEQWVSGRKKAEELERDLRKAKK-------KIKKLEDDNPW 50 (194)
T ss_dssp ---------HHHH---------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-TT
T ss_pred cccccCcccHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhccCcc
Confidence 3445556666654 33 4799999999999998766 77889988853
No 436
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=24.93 E-value=3.8e+02 Score=30.43 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=19.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHH
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQ 577 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQ 577 (726)
.+..|..+|+.+|..-.=|.+.+-+|
T Consensus 27 ~~~~~~~~le~~~~~p~~w~d~~~~~ 52 (364)
T TIGR00020 27 KKKARLEELEKEMEDPNFWNDQERAQ 52 (364)
T ss_pred HHHHHHHHHHHHhcCCccccCHHHHH
Confidence 56678888898888877787765443
No 437
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.49 E-value=5.5e+02 Score=23.48 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=41.1
Q ss_pred hhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHh
Q 004861 632 ERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (726)
Q Consensus 632 erAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qs 682 (726)
+.....|++|....+.|-+|++.+.=++..=...|.||+.|=+-.+..+.+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888999999999998888888888899999888777666543
No 438
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.38 E-value=9.3e+02 Score=27.08 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=48.9
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHH---------------------HHhHHHHHHHHHHHHH
Q 004861 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMK---------------------FQSWEKQKALFQEELV 695 (726)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk---------------------~qsWEkQK~lLQEELa 695 (726)
|++-|-.|...+|.|++.=|+-|-+=..-|+.+.++-...... +---..|.-.|++|+.
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~ 89 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVE 89 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888899999999998555444566655544433311 1233456667888888
Q ss_pred HHHHHHHHHHHHH
Q 004861 696 TEKRKVVQLLQEL 708 (726)
Q Consensus 696 ~eK~Kl~~l~qel 708 (726)
.-++||.++|-+.
T Consensus 90 ~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 90 ELRQKLNEAQGDI 102 (319)
T ss_pred HHHHHHHHHhchH
Confidence 8888888777663
No 439
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=24.16 E-value=4.7e+02 Score=25.94 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=24.7
Q ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhh
Q 004861 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEEN 612 (726)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~ 612 (726)
|.---+++++..|.+.|-.+....|--.+.|.
T Consensus 31 R~~~lk~dik~~k~~~enledA~~EieL~Ded 62 (131)
T KOG1760|consen 31 RKDDLKADIKEAKTEIENLEDASNEIELLDED 62 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHhhcCcc
Confidence 33344678888899999888888888888776
No 440
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=24.01 E-value=5.4e+02 Score=31.00 Aligned_cols=57 Identities=25% Similarity=0.240 Sum_probs=48.6
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 004861 599 VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 599 ~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa 655 (726)
.++|.+|-+.||-.+...|-+-|.....-...+|.|.+.+-++|...+....++..-
T Consensus 7 ~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~ 63 (701)
T PF09763_consen 7 EERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSV 63 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888889999999999999999999999999999999988888777777653
No 441
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.84 E-value=1.1e+02 Score=31.54 Aligned_cols=119 Identities=21% Similarity=0.371 Sum_probs=70.8
Q ss_pred cccccCCCC-------chhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh--------H--------------
Q 004861 536 SLEHLVPQD-------KRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKD--------K-------------- 586 (726)
Q Consensus 536 ~~~~~Vp~D-------~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kd--------k-------------- 586 (726)
..|.+||.+ ..||+|.++|.++++|+.+|++-+.|+-.-+-.--.-+..+ +
T Consensus 5 ~~G~lvp~~~ik~~d~l~De~V~~~~~~a~~l~~~l~~fK~~~f~d~~af~~l~~e~Yg~k~gg~kGn~Tl~sfDG~~kV 84 (195)
T PF11363_consen 5 AKGRLVPEENIKPYDLLRDELVREIVGKAKELSEQLAEFKAHTFEDIEAFIELSAEEYGVKLGGKKGNVTLTSFDGRYKV 84 (195)
T ss_pred CCCCEechHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcCcEEEEEeCCCEEE
Confidence 445666654 37999999999999999999999999877553322111110 0
Q ss_pred ----HHHHHHHHhHHHHHHHHHHhhhhhhhhhh---hH-HHHHHHHHH-hhhhhhhhh-hhHHHHHhhhHHHHHHHHHHH
Q 004861 587 ----AELKTLRQEKEEVERLKKEKQILEENTMK---KL-SEMENALCK-ASGQVERAN-SAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 587 ----~ELksLR~EkEE~erlkKeKq~lEe~T~K---rL-sEmEnAL~k-as~QlerAn-s~vrrLE~EnA~lR~EmEAaK 656 (726)
.+..+..-+.+-+..| =.++|.+-|.- .| .=.+.|+.. ..|+|+.+. -..|||+-+-.....-|+|-+
T Consensus 85 ~i~~~~~~~Fde~l~~Ak~l--Ide~l~~w~~g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl~i~D~~w~~am~aI~ 162 (195)
T PF11363_consen 85 TIAVQDRISFDERLQAAKAL--IDECLNEWAKGADPELRALVNRAFQVDKEGNLNTSRILGLRRLEIDDERWQEAMDAIK 162 (195)
T ss_pred EEEecccCCcChHHHHHHHH--HHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcCHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 1112222222222222 12334443322 11 224667776 788888874 457888888777777777743
No 442
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.83 E-value=8.2e+02 Score=25.29 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=7.6
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 004861 638 VRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 638 vrrLE~EnA~lR~EmEAaK 656 (726)
+.+|+-+.+.++.+||+..
T Consensus 140 i~el~~~~~~~~~~ke~~~ 158 (190)
T PF05266_consen 140 ILELQRQAAKLKEKKEAKD 158 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433
No 443
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.76 E-value=5.5e+02 Score=23.25 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004861 690 FQEELVTEKRKVVQLLQE 707 (726)
Q Consensus 690 LQEELa~eK~Kl~~l~qe 707 (726)
|.+|...-|.+|..+..+
T Consensus 72 l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 444
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=23.70 E-value=2.9e+02 Score=28.06 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=22.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 677 lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
+.|.+...+++..-+.|+..-+..+..++.++++++..-+++
T Consensus 39 ~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (265)
T TIGR00999 39 YEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAKSELRSA 80 (265)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444455666666666666666666555544443
No 445
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.69 E-value=6.3e+02 Score=26.58 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=17.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~q 706 (726)
.+..-|.|-.-|++=|+.-++-|.+|+|
T Consensus 168 Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666777777777666665555543
No 446
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=7.7e+02 Score=24.84 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=51.9
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHH
Q 004861 608 ILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK 687 (726)
Q Consensus 608 ~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK 687 (726)
.|.|-..|+-.+....|++.-...+.+.--.+-|..+.-+++..+. -|+.+-=|+. ..+..+.+-
T Consensus 9 ~l~dl~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~-~k~~~G~s~~--------------q~~nyq~fI 73 (148)
T COG2882 9 KLLDLAKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLN-EKLKSGVSAA--------------QWQNYQQFI 73 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccHH--------------HHHHHHHHH
Confidence 3445555555666667777777777776677777766666665532 2343333333 334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 688 ALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
.-|+.+|...++.|.++...++++.
T Consensus 74 ~~Le~~I~q~~~~~~~~~~~ve~~r 98 (148)
T COG2882 74 SQLEVAIDQQQSQLSKLRKQVEQKR 98 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665555555544
No 447
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.09 E-value=5.1e+02 Score=29.62 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004861 690 FQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 690 LQEELa~eK~Kl~~l~qel~qa 711 (726)
|.+|...-|.+|.++.+++.++
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 448
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=23.05 E-value=8.3e+02 Score=25.06 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=18.3
Q ss_pred hhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 629 GQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 629 ~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
..+-+=|.-++.|..||.+||.=.|
T Consensus 63 ~~l~~En~qi~~Lq~EN~eL~~~le 87 (181)
T PF05769_consen 63 AGLQQENRQIRQLQQENRELRQSLE 87 (181)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4445557778999999999986444
No 449
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.98 E-value=4e+02 Score=25.11 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=35.5
Q ss_pred HHHhHHHHHHHHHHHHHhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 659 AAESAASCQEVSKREKKTQ-MKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 659 A~ES~~sc~ev~krekk~l-kk~qsWEkQK~lLQEELa~eK~Kl~~l~qel 708 (726)
+.|..--||+.+-.....+ .+++.+..+...|+.++...+.++..|++|+
T Consensus 67 ~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 67 SIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677778888666654444 4567777777777777777777777777764
No 450
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=22.94 E-value=1.1e+02 Score=30.31 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=28.3
Q ss_pred cccCcCcccccCCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHH
Q 004861 530 ILSDDTSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAE 588 (726)
Q Consensus 530 i~~D~~~~~~~Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~E 588 (726)
|.+| + .|+....+|. .++.|+.+++. |+++..||+||+.|-..
T Consensus 92 fkl~-~---~~~l~~~~d~-------~l~~LE~e~~l-----Q~qI~eAArrLa~e~~l 134 (138)
T PF11819_consen 92 FKLD-E---QNILKKDEDD-------ELSQLERELAL-----QQQIVEAARRLANEPNL 134 (138)
T ss_pred ccCc-h---hhccCcCcch-------HHHHHHHHHHH-----HHHHHHHHHHHhcCccc
Confidence 6777 2 2566666663 33455555543 68999999999998543
No 451
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=22.82 E-value=7.3e+02 Score=24.31 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=31.0
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 670 SKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 670 ~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
-||=.=.-+-+.+.|.|-.-+|+|....|.+|.++|+.-+
T Consensus 75 ~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 75 GKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333445667899999999999999999999998754
No 452
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=22.72 E-value=97 Score=28.71 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=25.7
Q ss_pred HhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 626 KASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 626 kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
..-+||++.+-+|+-|+--++.|..|+-|||
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaAR 93 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAAR 93 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456889999999999999999888888876
No 453
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.29 E-value=5.4e+02 Score=25.62 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHh---hhHHHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEV---ENTALRQEMEAAK 656 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~---EnA~lR~EmEAaK 656 (726)
++.+.+.++....+||+-+|..+..|.. .|.+|+++.+.-+
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq 64 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQ 64 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4444455555555666666666555554 4555555544433
No 454
>PF09607 BrkDBD: Brinker DNA-binding domain; InterPro: IPR018586 This DNA-binding domain is the first approx. 100 residues of the N-terminal end of Brinker. The structure of this domain in complex with DNA consists of four alpha-helices that contain a helix-turn-helix DNA recognition motif specific for GC-rich DNA. The Brinker nuclear repressor is a major element of the Drosophila Decapentaplegic morphogen signalling pathway []. ; PDB: 2GLO_A.
Probab=22.09 E-value=70 Score=27.58 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=25.5
Q ss_pred HHhHHHhHHH---HH---H-HHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004861 656 KLRAAESAAS---CQ---E-VSKREKKTQMKFQSWEKQKALFQEELV 695 (726)
Q Consensus 656 KL~A~ES~~s---c~---e-v~krekk~lkk~qsWEkQK~lLQEELa 695 (726)
||.+.|++.. |+ - +.++=.=.-+..+-|-+|+..||++.+
T Consensus 11 KL~Vv~~a~~~~nc~~~~RAaarkf~V~r~~Vr~W~kqe~~L~~~~~ 57 (58)
T PF09607_consen 11 KLKVVEYAEKDNNCKGNQRAAARKFNVSRRQVRKWRKQEEELREEDA 57 (58)
T ss_dssp HHHHHHHHHH-TTTTT-HHHHHHHTTS-HHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHccchhhhHHHHHHHhCccHHHHHHHHHHHHHHHhhhc
Confidence 6667766643 33 2 233322244678899999999999864
No 455
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.83 E-value=9.7e+02 Score=25.38 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=10.5
Q ss_pred HHHHhhhhHHHHHHHHHhHH
Q 004861 578 AARRLSKDKAELKTLRQEKE 597 (726)
Q Consensus 578 aarRL~kdk~ELksLR~EkE 597 (726)
-..+..+|+.++-.=|...|
T Consensus 16 ~g~~~~kel~~flkeRa~IE 35 (261)
T cd07674 16 HGQISTKELADFVRERAAIE 35 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45666666665544444333
No 456
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=21.79 E-value=1.2e+02 Score=26.07 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHhhccccccCCcchhHHHHHHH
Q 004861 137 LDAIFKSAIKKIVACGYMEEVATKAVLRSGLCYGSKDTVSNIVDNTL 183 (726)
Q Consensus 137 Ih~fY~~ALarLP~~g~re~~~~rALL~AG~CYGplDPVSNII~NTI 183 (726)
++|+=...+.++..+|+..+....+|.+-| |--+|+++|+-.|.|
T Consensus 5 ~~Gi~~~lVd~F~~mGF~~dkVvevlrrlg--ik~~n~~dn~t~~~i 49 (55)
T PF09288_consen 5 LYGIDKDLVDQFENMGFERDKVVEVLRRLG--IKSMNGVDNETENKI 49 (55)
T ss_dssp ----SHHHHHHHHHHT--HHHHHHHHHHS----SS--SS--HHHHHH
T ss_pred HcCCCHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCccchhHHHH
Confidence 456667788999999999998999999988 688999999999987
No 457
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=21.60 E-value=1.7e+02 Score=31.93 Aligned_cols=40 Identities=35% Similarity=0.560 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHH-HHHHHHhhhhhh
Q 004861 568 TEWANQKVMQAARRLSKDKAELKTLRQEKEEV-ERLKKEKQILEE 611 (726)
Q Consensus 568 tdWAnqKvmQaarRL~kdk~ELksLR~EkEE~-erlkKeKq~lEe 611 (726)
.+||.+ |-.||..|++-|...=.+-||- |++..||+.|++
T Consensus 201 ~~WA~e----A~~R~~eel~lL~~fYE~~eek~E~y~~ek~al~~ 241 (260)
T PF11079_consen 201 HDWAEE----ARERWQEELALLDHFYEDEEEKPEQYEIEKQALQE 241 (260)
T ss_pred cHHHHH----HHHHHHHHHHHHHHhhcchhcchHHHHHHHHHHHH
Confidence 568764 7789999999998887776554 788888888865
No 458
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=21.60 E-value=4.5e+02 Score=28.96 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 691 QEELVTEKRKVVQLLQELDQAKALQEQL 718 (726)
Q Consensus 691 QEELa~eK~Kl~~l~qel~qak~~q~q~ 718 (726)
|.|+...+..+.+.+.++++++..-+++
T Consensus 138 ~~~~~~~~~~~~~a~a~~~~a~a~l~~a 165 (385)
T PRK09578 138 ERDYTEAVADERQAKAAVASAKAELARA 165 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444444444444444444433333
No 459
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.48 E-value=1.1e+03 Score=26.70 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=45.7
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
..++||..+...++-.|. -.+.-+.|.....|.++.++.+..==++... ..-..+++.+.+|++++..++..-.
T Consensus 12 efq~Lqethr~Y~qKlee----l~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~--~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 12 EFQELQETHRSYKQKLEE----LSKLQDKCSSSISHQKKRLKELKKSLKRCKK--SLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHHHhhHH
Confidence 445555555555444332 2344567777777777766665432221100 0122456778888888888888888
Q ss_pred HHHhh
Q 004861 717 QLEVF 721 (726)
Q Consensus 717 q~E~~ 721 (726)
++|+.
T Consensus 86 DmEa~ 90 (330)
T PF07851_consen 86 DMEAF 90 (330)
T ss_pred HHHhh
Confidence 88854
No 460
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.48 E-value=2.7e+02 Score=24.15 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 619 EmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
.+-.+--.+..+|.-|...-+.|+.++..|+.|||-.+
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556677788888889999999999999998754
No 461
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=21.46 E-value=8.3e+02 Score=24.47 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHH----------HHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTAL----------RQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWE 684 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~l----------R~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWE 684 (726)
-|+.-.|-+|.-.-..||.|+.+|+. .|+-.+ +--|++.|++-.+..= ....++|..=+
T Consensus 29 ~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv---------~nkq~~l~AA~ 97 (136)
T PF11570_consen 29 ERQASAEQALNGRRSELDQANKKVKE--AEIKQDEFFANNPPHEYGRGWQLKVRRAQKDV---------QNKQNKLKAAQ 97 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH--HHhcccccccCCCccccccHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 35667778899999999999999998 222211 1246665555332221 22334566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 685 KQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 685 kQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
+.+.-+++||..-+.=|.+..+.--|...-.+..|.
T Consensus 98 ~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAen 133 (136)
T PF11570_consen 98 KELNAADEELNRIQAALSQAMERRKQKESKKKDAEN 133 (136)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 666777777666555555555555554444444443
No 462
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=21.31 E-value=5.8e+02 Score=22.58 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWE----------KQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWE----------kQK~lLQEELa~eK~Kl~~l~qel 708 (726)
.+.++|..+. +....|.++.+.-...++++..|. -+..+|..|+...-.....+|+..
T Consensus 27 Ds~~lR~~i~-------~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~ 94 (102)
T PF14523_consen 27 DSQELREKIH-------QLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRY 94 (102)
T ss_dssp --HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666553 667788999999999999999991 334445555544444444444433
No 463
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=21.27 E-value=6.6e+02 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=13.7
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhhHHHHHHH
Q 004861 623 ALCKASGQVERANSAVRRLEVENTALRQEM 652 (726)
Q Consensus 623 AL~kas~QlerAns~vrrLE~EnA~lR~Em 652 (726)
+|..+..+++.....+..|.....+...++
T Consensus 21 ~la~~~~~~~~~~~~l~~l~~~~~~~~~~~ 50 (141)
T TIGR02473 21 ELAKAQAEFERLETQLQQLIKYREEYEQQA 50 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444554444444444
No 464
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.27 E-value=1.6e+02 Score=31.81 Aligned_cols=14 Identities=57% Similarity=0.714 Sum_probs=7.0
Q ss_pred HHHHhhhHHHHHHH
Q 004861 639 RRLEVENTALRQEM 652 (726)
Q Consensus 639 rrLE~EnA~lR~Em 652 (726)
+.|+.||.+||+|.
T Consensus 69 ~~l~~EN~~Lr~e~ 82 (283)
T TIGR00219 69 NNLEYENYKLRQEL 82 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 465
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=21.26 E-value=3.5e+02 Score=32.02 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=17.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
||+.=.|-|.+|||-|..+-..--+..|-+.
T Consensus 564 r~kkEkk~k~k~qe~L~~~sk~reqaeqs~~ 594 (641)
T KOG3915|consen 564 RLKKEKKAKRKLQEALEFESKRREQAEQSLK 594 (641)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhhhhccc
Confidence 3333344577888888777633333333333
No 466
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=21.24 E-value=2.6e+02 Score=25.46 Aligned_cols=41 Identities=32% Similarity=0.399 Sum_probs=34.5
Q ss_pred HHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHH
Q 004861 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA 664 (726)
Q Consensus 624 L~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~ 664 (726)
+.+.+.+|---|+.|-+||+..-.+|.+..|||-.|...-+
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~ 67 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQ 67 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 56778888889999999999999999999999987765443
No 467
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.12 E-value=1.4e+02 Score=29.00 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=12.6
Q ss_pred ccCCCCchhHHHHHHhH
Q 004861 539 HLVPQDKRDEIILKLIP 555 (726)
Q Consensus 539 ~~Vp~D~KDEmilkLv~ 555 (726)
.-|.-|-|=|..++||.
T Consensus 42 ~VvaIDNKIeQAMDLVK 58 (123)
T KOG4797|consen 42 SVVAIDNKIEQAMDLVK 58 (123)
T ss_pred ceEeechHHHHHHHHHH
Confidence 34555678899999985
No 468
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=21.06 E-value=9.4e+02 Score=25.62 Aligned_cols=72 Identities=22% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 649 RQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 649 R~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
|++.=+..|..+|... .++.+.....-.+++.++++...+-++-..+-.++ .++.+++|++.-+++..+|+.
T Consensus 37 R~~~I~~~l~~Ae~~~--~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~--~~~il~~A~~ea~~~~~~a~~ 108 (250)
T PRK14474 37 RQQRIANRWQDAEQRQ--QEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQ--RQHLLNEAREDVATARDEWLE 108 (250)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
No 469
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=21.03 E-value=1.4e+03 Score=26.79 Aligned_cols=29 Identities=28% Similarity=0.388 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 681 QSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 681 qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
-...|+|..|-.||..-|+-+.|++-+++
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777776666666554
No 470
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.98 E-value=4.3e+02 Score=25.97 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=8.3
Q ss_pred HHHHhHHHHHHHHHHH
Q 004861 550 ILKLIPRVRELHNQLH 565 (726)
Q Consensus 550 ilkLv~rv~eLq~qlq 565 (726)
+-.|=.++.+|+.|+.
T Consensus 74 l~~ld~ei~~L~~el~ 89 (169)
T PF07106_consen 74 LAELDAEIKELREELA 89 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445666655543
No 471
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=20.89 E-value=7.3e+02 Score=23.60 Aligned_cols=35 Identities=11% Similarity=0.319 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
.+..|..-...|.+.|...+..|..++++++++++
T Consensus 65 ~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~ 99 (147)
T PRK05689 65 WWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARK 99 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777777776666544
No 472
>PRK12705 hypothetical protein; Provisional
Probab=20.81 E-value=1.5e+03 Score=27.07 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhh
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVEN 645 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~En 645 (726)
||.+-|..|.+...+|++-...+.+.+.+.
T Consensus 85 rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l 114 (508)
T PRK12705 85 RLVQKEEQLDARAEKLDNLENQLEEREKAL 114 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554444443333
No 473
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=20.80 E-value=3.9e+02 Score=27.00 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 594 QEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 594 ~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
+...|.+.|+++....- +-....+|+.+|.+.-.|+..-..--++-|+....-+.|+|+.+
T Consensus 60 ~r~~E~~~Lk~~lk~~k--~~~~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v~ 120 (168)
T PF06102_consen 60 YREKEIKELKKQLKKTK--DPEEREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKVK 120 (168)
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=20.76 E-value=3.3e+02 Score=24.34 Aligned_cols=49 Identities=39% Similarity=0.578 Sum_probs=26.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH--Hhhhhhhhhhh
Q 004861 559 ELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKK--EKQILEENTMK 615 (726)
Q Consensus 559 eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkK--eKq~lEe~T~K 615 (726)
++.+--+|+.||-+| |-+-..||..+|-+..+.+.+|. ||+.--|-|.|
T Consensus 4 dv~~l~~EkeeL~~k--------lk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK 54 (69)
T PF08912_consen 4 DVANLAKEKEELNNK--------LKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLK 54 (69)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666554 33334556666666655555544 55555554444
No 475
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=20.67 E-value=1.2e+03 Score=26.06 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=15.7
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhhhHH
Q 004861 589 LKTLRQEKEEVERLKKEKQILEENTMKKLS 618 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLs 618 (726)
-|.|....++...++|-+..+|+...|.++
T Consensus 23 qk~l~~~~~l~~~~~k~~~~~e~~~~k~~~ 52 (332)
T TIGR01541 23 EKSLQSRSDEIIALIKLEKLLEEAERKALE 52 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555555444444
No 476
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=20.63 E-value=7e+02 Score=23.27 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=46.6
Q ss_pred hhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 631 VERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 631 lerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~ 705 (726)
+.+.....+.++-+...++++--..|..-.|-++.++++.++.+.... -..-..+-..++.++..++++..-++
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777788888888888888888888888888877766555 11111222334455555555444333
No 477
>KOG3102 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.50 E-value=2.6e+02 Score=30.05 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=24.1
Q ss_pred cCcccCcCccccc------CCCCchhHHHHHHhHHH
Q 004861 528 AGILSDDTSLEHL------VPQDKRDEIILKLIPRV 557 (726)
Q Consensus 528 ~~i~~D~~~~~~~------Vp~D~KDEmilkLv~rv 557 (726)
+.||+..+++..+ +|.|+|+|.+|++|-++
T Consensus 70 R~FpHerGNwAthVYVP~~a~~~~~eEf~l~~va~l 105 (269)
T KOG3102|consen 70 RNFPHERGNWATHVYVPVCAPPLPKEEFVLKKVASL 105 (269)
T ss_pred ccCccccCceeEEEEEeeccCCChHHHHHHHHHHhh
Confidence 8899987776544 37899999999988765
No 478
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.34 E-value=1.1e+03 Score=25.40 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=61.5
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHH-HHhHHHHHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMK-FQSWEKQKALFQ 691 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk-~qsWEkQK~lLQ 691 (726)
+-+.|++.|..+.....+.+.+....+.|+.......+.|+..+.+-.|-.....+-.+.+++.+.. ...+-.++...|
T Consensus 195 ~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq 274 (297)
T PF02841_consen 195 ADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQ 274 (297)
T ss_dssp H-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888887777777777777777887778888888888887777777766666666654333 223334444455
Q ss_pred HHHHHH--HHHHHHHHHHHH
Q 004861 692 EELVTE--KRKVVQLLQELD 709 (726)
Q Consensus 692 EELa~e--K~Kl~~l~qel~ 709 (726)
+++-.+ +.++..+++|+.
T Consensus 275 ~~~l~e~~~~~~~~l~~ei~ 294 (297)
T PF02841_consen 275 EELLKEGFQEEAEKLQKEIQ 294 (297)
T ss_dssp HHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 554333 445555555544
No 479
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=20.29 E-value=9.9e+02 Score=24.88 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHH-hH
Q 004861 585 DKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE-SA 663 (726)
Q Consensus 585 dk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~E-S~ 663 (726)
+.++|..|++..++. +..+...-++=+.+.|.-+....+.++.+-..+..=-.+.-+-++|.-..++++.= ..
T Consensus 47 ~rA~LNKl~k~id~~------RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~ 120 (215)
T PF07083_consen 47 DRAELNKLKKAIDDK------RKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEM 120 (215)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655532 22233444556777787777777777777666555444444555555445544431 11
Q ss_pred HHHHHH----HH--HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 664 ASCQEV----SK--REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 664 ~sc~ev----~k--rekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
.....| .. ..-+.+.+.-+|-+ ..+||.+ .+..+.+++++.+..+..++..
T Consensus 121 ~~~~~v~~~~fe~~~~~~wlnks~s~kk----~~eei~~---~i~~~~~~~~~~~~~~~~i~~~ 177 (215)
T PF07083_consen 121 AEEYGVDPEPFERIIKPKWLNKSYSLKK----IEEEIDD---QIDKIKQDLEEIKAAKQAIEEK 177 (215)
T ss_pred HHHcCCChHHHhhhcchHHhhcCCcHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11 33455555555544 6777776 5666666666666666666543
No 480
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=20.06 E-value=2.1e+02 Score=21.45 Aligned_cols=31 Identities=35% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhh
Q 004861 214 LVCVLREVRPFFSTGDAMWCLLICDMNVSHACA 246 (726)
Q Consensus 214 LVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~a 246 (726)
.|.-|+.. .|+..+|...|..|+.|+..|+.
T Consensus 5 ~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~ 35 (37)
T PF00627_consen 5 KVQQLMEM--GFSREQAREALRACNGNVERAVD 35 (37)
T ss_dssp HHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 45566666 78999999999999999999975
Done!