Query 004861
Match_columns 726
No_of_seqs 117 out of 135
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 08:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.3 0.13 4.6E-06 48.4 24.2 15 582-596 43-57 (284)
2 1c1g_A Tropomyosin; contractIl 97.1 0.16 5.5E-06 47.9 23.4 38 616-653 70-107 (284)
3 3oja_B Anopheles plasmodium-re 96.9 0.011 3.9E-07 64.5 15.1 79 644-722 503-581 (597)
4 2efr_A General control protein 96.9 0.079 2.7E-06 51.1 18.7 134 556-721 1-141 (155)
5 4gkw_A Spindle assembly abnorm 96.8 0.047 1.6E-06 51.7 16.0 136 543-686 6-162 (167)
6 2dfs_A Myosin-5A; myosin-V, in 96.7 0.041 1.4E-06 66.2 18.7 82 623-707 971-1052(1080)
7 1i84_S Smooth muscle myosin he 96.5 0.0056 1.9E-07 73.8 9.6 39 616-654 928-966 (1184)
8 2dfs_A Myosin-5A; myosin-V, in 96.2 0.096 3.3E-06 63.1 17.4 37 575-611 892-928 (1080)
9 1i84_S Smooth muscle myosin he 96.1 0.078 2.7E-06 64.0 16.4 37 617-653 859-895 (1184)
10 3oja_A Leucine-rich immune mol 95.5 0.55 1.9E-05 50.5 18.2 116 588-717 354-481 (487)
11 3na7_A HP0958; flagellar bioge 95.1 2.5 8.6E-05 42.6 20.7 86 616-701 54-148 (256)
12 3oja_B Anopheles plasmodium-re 94.4 0.25 8.6E-06 54.0 12.1 72 638-709 511-582 (597)
13 3vkg_A Dynein heavy chain, cyt 92.7 5.1 0.00017 53.6 21.7 28 572-599 1926-1953(3245)
14 3na7_A HP0958; flagellar bioge 92.3 3.7 0.00013 41.3 15.9 41 616-656 40-80 (256)
15 1f5n_A Interferon-induced guan 92.0 20 0.00068 40.8 23.6 173 544-716 375-584 (592)
16 2ocy_A RAB guanine nucleotide 90.4 13 0.00045 35.8 16.5 141 572-719 5-149 (154)
17 2v71_A Nuclear distribution pr 90.2 16 0.00054 36.3 18.1 118 561-723 9-126 (189)
18 3o0z_A RHO-associated protein 89.5 17 0.00057 35.6 17.0 70 634-713 88-157 (168)
19 3vkg_A Dynein heavy chain, cyt 88.5 19 0.00065 48.4 21.2 23 587-609 1924-1946(3245)
20 2i1j_A Moesin; FERM, coiled-co 88.4 0.43 1.5E-05 53.8 5.6 124 592-722 326-456 (575)
21 1otr_A Protein CUE2; protein-p 87.8 0.46 1.6E-05 37.8 3.8 37 213-249 6-42 (49)
22 3iox_A AGI/II, PA; alpha helix 85.5 6.9 0.00024 43.8 12.8 74 637-720 35-108 (497)
23 2fxo_A Myosin heavy chain, car 83.7 26 0.0009 32.1 17.1 95 616-710 14-108 (129)
24 3i00_A HIP-I, huntingtin-inter 83.2 7.3 0.00025 36.0 10.0 69 541-609 8-80 (120)
25 3i00_A HIP-I, huntingtin-inter 82.8 2.9 9.7E-05 38.8 7.1 65 601-665 26-90 (120)
26 3o0z_A RHO-associated protein 82.7 17 0.00057 35.6 12.7 56 665-720 49-118 (168)
27 2b9c_A Striated-muscle alpha t 82.3 35 0.0012 32.4 15.3 82 644-725 53-141 (147)
28 2v66_B Nuclear distribution pr 81.8 32 0.0011 31.6 16.0 50 550-599 5-54 (111)
29 3mq7_A Bone marrow stromal ant 80.7 37 0.0013 31.6 13.5 53 664-716 49-102 (121)
30 1ic2_A Tropomyosin alpha chain 79.8 19 0.00064 30.6 10.7 41 681-721 30-70 (81)
31 3haj_A Human pacsin2 F-BAR; pa 78.7 77 0.0026 34.5 17.8 21 673-693 226-246 (486)
32 1m1j_B Fibrinogen beta chain; 77.9 39 0.0013 37.6 15.2 28 683-710 166-193 (464)
33 3oja_A Leucine-rich immune mol 77.2 22 0.00075 38.1 12.8 57 619-675 425-481 (487)
34 2lw1_A ABC transporter ATP-bin 76.8 6.5 0.00022 33.9 7.0 47 678-724 29-81 (89)
35 2xnx_M M protein, M1-BC1; cell 75.9 3.5 0.00012 39.5 5.4 53 600-652 43-96 (146)
36 3ghg_A Fibrinogen alpha chain; 75.3 25 0.00086 39.8 12.8 24 685-708 131-154 (562)
37 3hnw_A Uncharacterized protein 75.3 19 0.00064 33.8 10.2 59 637-709 76-134 (138)
38 1gmj_A ATPase inhibitor; coile 74.6 15 0.00053 32.3 8.7 45 670-720 35-79 (84)
39 3tnu_B Keratin, type II cytosk 74.5 9.1 0.00031 35.1 7.8 27 628-654 74-100 (129)
40 2b9c_A Striated-muscle alpha t 74.4 60 0.0021 30.8 14.8 93 590-682 27-119 (147)
41 4emc_A Monopolin complex subun 74.4 11 0.00037 37.6 8.7 28 626-653 10-37 (190)
42 3tnu_A Keratin, type I cytoske 73.8 7 0.00024 36.0 6.8 36 617-655 68-103 (131)
43 3u59_A Tropomyosin beta chain; 66.3 69 0.0023 28.2 11.5 37 684-720 50-86 (101)
44 2i1j_A Moesin; FERM, coiled-co 66.1 9.7 0.00033 42.9 7.2 145 557-708 302-456 (575)
45 3iox_A AGI/II, PA; alpha helix 65.2 64 0.0022 36.3 13.2 55 641-695 46-104 (497)
46 1m1j_C Fibrinogen gamma chain; 64.4 23 0.00079 38.7 9.5 29 610-642 33-61 (409)
47 1x8y_A Lamin A/C; structural p 63.9 44 0.0015 28.9 9.3 51 598-655 4-54 (86)
48 3q8t_A Beclin-1; autophagy, AT 63.7 78 0.0027 27.9 13.0 85 621-712 10-94 (96)
49 3u1c_A Tropomyosin alpha-1 cha 63.3 80 0.0027 27.9 12.7 38 617-654 25-62 (101)
50 2di0_A Activating signal coint 62.9 9.7 0.00033 32.5 4.9 39 210-248 12-50 (71)
51 2v71_A Nuclear distribution pr 60.6 1.4E+02 0.0047 29.7 18.2 135 549-701 18-159 (189)
52 2ocy_A RAB guanine nucleotide 60.4 1.1E+02 0.0037 29.6 12.2 74 613-711 11-84 (154)
53 2xus_A Breast cancer metastasi 58.8 21 0.00071 28.7 5.8 42 670-713 5-46 (49)
54 1fxk_A Prefoldin; archaeal pro 57.8 67 0.0023 27.6 9.6 73 585-657 20-100 (107)
55 2efr_A General control protein 56.4 1.4E+02 0.0049 28.6 15.2 28 620-647 26-53 (155)
56 3ni0_A Bone marrow stromal ant 56.3 84 0.0029 28.4 9.9 63 629-705 25-87 (99)
57 1deq_A Fibrinogen (alpha chain 56.1 1.1E+02 0.0036 33.6 12.5 41 682-722 117-157 (390)
58 1d7m_A Cortexillin I; coiled-c 55.3 1.2E+02 0.004 27.3 13.7 65 614-692 24-88 (101)
59 3trt_A Vimentin; cytoskeleton, 55.3 72 0.0025 26.3 9.0 65 589-655 11-75 (77)
60 4dk0_A Putative MACA; alpha-ha 55.0 10 0.00036 38.7 4.6 65 581-649 85-149 (369)
61 1u4q_A Spectrin alpha chain, b 53.2 1.8E+02 0.006 28.7 15.9 46 555-600 3-49 (322)
62 3tnu_B Keratin, type II cytosk 52.5 1.4E+02 0.0047 27.2 13.1 98 609-709 9-106 (129)
63 4dk0_A Putative MACA; alpha-ha 52.3 24 0.00083 36.0 6.8 18 694-711 131-148 (369)
64 1a92_A Delta antigen; leucine 52.2 12 0.00041 30.0 3.4 29 611-646 10-38 (50)
65 1go4_E MAD1 (mitotic arrest de 51.8 45 0.0016 30.1 7.5 62 582-657 14-89 (100)
66 1wle_A Seryl-tRNA synthetase; 51.3 1.3E+02 0.0044 33.6 12.8 15 616-630 71-85 (501)
67 1wgl_A TOLL-interacting protei 50.2 15 0.00053 29.9 3.9 38 213-250 11-48 (59)
68 3tnu_A Keratin, type I cytoske 49.9 1.5E+02 0.0052 27.0 12.2 41 609-649 11-58 (131)
69 1cii_A Colicin IA; bacteriocin 49.6 1.6E+02 0.0054 33.3 12.7 49 613-661 361-409 (602)
70 2xs1_A Programmed cell death 6 49.2 3E+02 0.01 31.5 15.7 25 543-567 377-401 (704)
71 3fpp_A Macrolide-specific effl 49.2 12 0.00041 38.0 3.9 57 582-642 85-141 (341)
72 2z5i_A TM, general control pro 47.4 51 0.0017 26.3 6.4 32 680-711 14-45 (52)
73 3q8t_A Beclin-1; autophagy, AT 47.2 45 0.0016 29.4 6.8 39 669-707 16-54 (96)
74 1gk4_A Vimentin; intermediate 47.2 1.3E+02 0.0046 25.6 10.9 50 599-655 3-52 (84)
75 2v4h_A NF-kappa-B essential mo 47.1 1.4E+02 0.0046 27.6 9.9 33 678-710 62-94 (110)
76 3mq9_A Bone marrow stromal ant 46.7 1.6E+02 0.0055 31.2 12.3 86 547-641 372-469 (471)
77 1cii_A Colicin IA; bacteriocin 46.7 1.5E+02 0.0052 33.4 12.0 41 614-654 355-395 (602)
78 3u59_A Tropomyosin beta chain; 46.4 1.5E+02 0.0052 25.9 12.2 11 589-599 11-21 (101)
79 3hnw_A Uncharacterized protein 45.4 81 0.0028 29.5 8.6 39 616-654 97-135 (138)
80 3a7p_A Autophagy protein 16; c 45.3 2.2E+02 0.0075 27.5 11.7 32 617-648 98-129 (152)
81 2eqb_B RAB guanine nucleotide 44.4 90 0.0031 28.1 8.2 60 630-724 6-65 (97)
82 3s4r_A Vimentin; alpha-helix, 44.3 1.3E+02 0.0044 26.4 9.2 59 637-718 24-82 (93)
83 2v4h_A NF-kappa-B essential mo 42.7 2E+02 0.007 26.4 11.9 30 680-709 78-107 (110)
84 1l8d_A DNA double-strand break 42.3 1.7E+02 0.0058 25.4 11.8 32 623-654 11-42 (112)
85 1ic2_A Tropomyosin alpha chain 41.9 1.6E+02 0.0054 24.9 9.8 30 614-643 5-34 (81)
86 2dhy_A CUE domain-containing p 41.2 8.9 0.0003 32.2 1.2 40 209-248 16-55 (67)
87 2fxo_A Myosin heavy chain, car 41.1 2.1E+02 0.0072 26.1 18.7 83 637-719 42-124 (129)
88 3bas_A Myosin heavy chain, str 41.0 1.8E+02 0.006 25.2 10.9 44 615-658 14-57 (89)
89 2p22_C Protein SRN2; endosome, 40.7 2.3E+02 0.0077 27.9 11.3 63 554-627 61-123 (192)
90 3pmr_A Amyloid-like protein 1; 40.7 1E+02 0.0035 31.3 8.9 66 598-663 26-103 (219)
91 2dq0_A Seryl-tRNA synthetase; 40.0 1E+02 0.0035 33.8 9.6 46 589-634 4-50 (455)
92 1sjj_A Actinin; 3-helix bundle 39.3 4.9E+02 0.017 29.8 19.9 44 556-599 371-416 (863)
93 3m9b_A Proteasome-associated A 37.8 23 0.00078 36.6 3.8 41 672-712 55-95 (251)
94 2jee_A YIIU; FTSZ, septum, coi 37.6 78 0.0027 27.7 6.5 29 685-713 20-48 (81)
95 2zqm_A Prefoldin beta subunit 36.9 1.9E+02 0.0064 25.0 9.2 75 583-657 23-105 (117)
96 3ajw_A Flagellar FLIJ protein; 36.6 2.1E+02 0.0072 25.5 9.7 104 607-725 11-114 (150)
97 2e7s_A RAB guanine nucleotide 36.2 2.5E+02 0.0087 26.5 10.3 115 582-713 17-131 (135)
98 3mq7_A Bone marrow stromal ant 36.2 2.7E+02 0.0093 25.9 10.8 36 614-649 70-105 (121)
99 1zbt_A RF-1, peptide chain rel 36.2 68 0.0023 34.8 7.3 40 552-594 21-60 (371)
100 3ghg_A Fibrinogen alpha chain; 35.7 1.8E+02 0.0061 33.1 10.6 31 535-565 39-74 (562)
101 3mud_A DNA repair protein XRCC 34.6 58 0.002 32.1 5.9 30 683-712 140-169 (175)
102 3u1c_A Tropomyosin alpha-1 cha 34.6 2.4E+02 0.0082 24.8 13.4 32 678-709 51-82 (101)
103 1cun_A Protein (alpha spectrin 34.4 2.8E+02 0.0095 25.5 19.0 47 679-725 140-197 (213)
104 2efl_A Formin-binding protein 33.2 3.6E+02 0.012 26.4 20.6 13 676-688 217-229 (305)
105 3mtu_E Head morphogenesis prot 33.1 59 0.002 28.2 5.0 34 679-712 38-71 (77)
106 3a7p_A Autophagy protein 16; c 32.0 3.6E+02 0.012 26.0 10.8 43 681-723 92-134 (152)
107 3cl3_D NF-kappa-B essential mo 31.7 51 0.0017 31.1 4.7 15 695-709 79-93 (130)
108 1m1j_C Fibrinogen gamma chain; 31.5 3.8E+02 0.013 29.3 12.2 17 688-704 108-124 (409)
109 3edu_A Beta-I spectrin, spectr 30.4 3.5E+02 0.012 25.4 17.8 43 559-601 5-48 (218)
110 3iv1_A Tumor susceptibility ge 30.2 1.9E+02 0.0067 25.0 7.8 63 639-708 14-76 (78)
111 3mov_A Lamin-B1; LMNB1, B-type 29.4 2.9E+02 0.01 24.3 9.2 48 601-655 16-63 (95)
112 4dyl_A Tyrosine-protein kinase 29.1 1.7E+02 0.006 31.1 9.0 56 596-652 329-389 (406)
113 2no2_A HIP-I, huntingtin-inter 28.9 3.2E+02 0.011 24.5 11.4 27 630-656 16-42 (107)
114 2w6b_A RHO guanine nucleotide 28.8 61 0.0021 26.6 4.1 18 603-620 27-46 (56)
115 3haj_A Human pacsin2 F-BAR; pa 28.4 6E+02 0.02 27.5 15.4 23 614-636 184-206 (486)
116 1g8x_A Myosin II heavy chain f 27.9 8E+02 0.027 29.7 15.2 54 544-598 756-810 (1010)
117 3k66_A Beta-amyloid-like prote 27.2 2.3E+02 0.0078 29.2 9.0 65 598-662 14-97 (239)
118 2ejs_A Autocrine motility fact 27.0 85 0.0029 25.8 4.7 35 211-246 13-47 (58)
119 2f1m_A Acriflavine resistance 26.9 1.5E+02 0.005 29.1 7.5 21 691-711 97-117 (277)
120 2qyw_A Vesicle transport throu 26.9 1.4E+02 0.0049 26.3 6.6 43 679-721 16-71 (102)
121 2b5u_A Colicin E3; high resolu 26.8 7.5E+02 0.026 28.1 18.7 71 567-643 307-377 (551)
122 3iv1_A Tumor susceptibility ge 26.8 3.1E+02 0.011 23.7 9.2 25 584-611 22-46 (78)
123 1l8d_A DNA double-strand break 26.7 2.6E+02 0.0089 24.2 8.3 38 616-653 65-102 (112)
124 3umh_A Amyloid beta A4 protein 26.7 1.8E+02 0.0061 29.4 8.0 66 598-663 19-96 (211)
125 1ik9_A DNA repair protein XRCC 26.6 4.9E+02 0.017 25.9 11.5 38 672-719 172-210 (213)
126 4g3o_A E3 ubiquitin-protein li 26.2 91 0.0031 25.7 4.8 36 210-246 16-51 (58)
127 3d5a_X RF1, peptide chain rele 25.9 1.6E+02 0.0054 31.8 7.9 39 550-591 5-43 (354)
128 1u5p_A Spectrin alpha chain, b 25.5 4.1E+02 0.014 24.6 16.6 166 555-725 3-200 (216)
129 3onj_A T-snare VTI1; helix, HA 25.0 1.6E+02 0.0056 25.6 6.6 43 680-722 3-57 (97)
130 1uii_A Geminin; human, DNA rep 24.8 3.2E+02 0.011 24.0 8.2 50 667-719 31-80 (83)
131 3cvf_A Homer-3, homer protein 24.8 1.5E+02 0.0051 25.8 6.1 27 630-656 7-33 (79)
132 3lay_A Zinc resistance-associa 24.8 2E+02 0.0069 28.0 7.8 22 636-657 113-134 (175)
133 2xv5_A Lamin-A/C; structural p 24.6 1.6E+02 0.0054 25.1 6.2 17 617-633 14-30 (74)
134 3ghg_C Fibrinogen gamma chain; 24.3 2.8E+02 0.0095 30.5 9.6 29 682-710 102-130 (411)
135 2gd5_A Charged multivesicular 23.8 4.7E+02 0.016 24.8 11.1 65 615-682 10-75 (179)
136 1z96_A DNA-damage, UBA-domain 23.6 1.2E+02 0.0043 21.5 4.7 33 213-247 6-38 (40)
137 1gqe_A Release factor 2, RF2; 23.5 3.3E+02 0.011 29.5 9.9 36 552-590 29-64 (365)
138 3qne_A Seryl-tRNA synthetase, 23.2 1.7E+02 0.0058 32.7 7.8 21 614-634 32-52 (485)
139 2ke4_A CDC42-interacting prote 23.0 4E+02 0.014 23.6 9.3 69 638-721 17-91 (98)
140 3kbt_A Beta-I spectrin, spectr 22.6 5.6E+02 0.019 25.2 20.0 44 557-600 112-156 (326)
141 1ify_A HHR23A, UV excision rep 22.6 1E+02 0.0034 23.9 4.2 27 140-166 7-33 (49)
142 2ekf_A Ancient ubiquitous prot 22.5 98 0.0033 25.7 4.3 35 211-246 13-47 (61)
143 1lwu_C Fibrinogen gamma chain; 21.6 2.3E+02 0.0078 30.1 8.1 35 679-713 20-54 (323)
144 2k48_A Nucleoprotein; viral pr 21.3 2.9E+02 0.01 25.3 7.5 80 607-716 27-106 (107)
145 4etp_A Kinesin-like protein KA 21.0 1.6E+02 0.0056 31.6 7.0 30 619-648 28-57 (403)
146 1wlq_A Geminin; coiled-coil; 2 21.0 3.5E+02 0.012 23.8 7.7 50 667-719 23-72 (83)
147 4b6x_A AVRRPS4, avirulence pro 21.0 76 0.0026 27.9 3.5 32 688-719 25-56 (90)
148 1bb1_A Designed, thermostable 20.9 1.8E+02 0.0063 21.4 5.0 28 682-709 6-33 (36)
149 4dzn_A Coiled-coil peptide CC- 20.7 1.7E+02 0.006 21.2 4.7 25 688-712 5-29 (33)
150 3k29_A Putative uncharacterize 20.6 6.1E+02 0.021 24.9 18.9 42 565-606 15-56 (169)
151 3err_A Fusion protein of micro 20.3 1.7E+02 0.0056 33.0 7.0 37 588-626 3-39 (536)
152 2wt7_B Transcription factor MA 20.3 3.3E+02 0.011 24.1 7.5 47 661-713 37-83 (90)
153 3qwe_A GMIP, GEM-interacting p 20.3 7.4E+02 0.025 25.7 15.8 138 547-690 97-247 (279)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.26 E-value=0.13 Score=48.38 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=5.7
Q ss_pred hhhhHHHHHHHHHhH
Q 004861 582 LSKDKAELKTLRQEK 596 (726)
Q Consensus 582 L~kdk~ELksLR~Ek 596 (726)
+..-..++..++.+.
T Consensus 43 ~~~~~~~~~~~~~~~ 57 (284)
T 1c1g_A 43 LVSLQKKLKATEDEL 57 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.15 E-value=0.16 Score=47.86 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
.+.+++..+....+++......+..++.+...+..+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (284)
T 1c1g_A 70 KLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLA 107 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.92 E-value=0.011 Score=64.53 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
....+++++...+-...+-..-+++..+..++-.+.++.-++++..++..+..+|.++.++.||++++++..+|.|.+.
T Consensus 503 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 503 SSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555566667777777777778889999999999999999999999999999999998888888654
No 4
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.88 E-value=0.079 Score=51.08 Aligned_cols=134 Identities=25% Similarity=0.250 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhh-------
Q 004861 556 RVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKAS------- 628 (726)
Q Consensus 556 rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas------- 628 (726)
|+..|+.||++=.+=|..|.-.+|| +-.|+ |.++.. =+..-.|+.+||.+|+.+.
T Consensus 1 r~~~lE~qlkeaae~ad~KyeEvaR-~E~dL----------EraEER-------ae~aE~k~~eLEeeL~~v~~nlKsLE 62 (155)
T 2efr_A 1 RMKQLEDKVEELLSKNYHLENEVAR-LKKLL----------ERAEER-------AELSEGKSAELEEELKTVTNNLKSLE 62 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHH-HHHHH----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHhhccch
Confidence 5778999999998889999999999 33333 323222 1223445556665554443
Q ss_pred hhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 629 ~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel 708 (726)
.+-++++-..-.+|.++..|......|-.+|-+..+++ +-.|++-..|.++|..+|.|...++++|
T Consensus 63 ~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv--------------~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 63 AQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV--------------TKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777888999999998888888888888744 4457888899999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 004861 709 DQAKALQEQLEVF 721 (726)
Q Consensus 709 ~qak~~q~q~E~~ 721 (726)
.++=.--..+.++
T Consensus 129 d~tl~el~~~~~~ 141 (155)
T 2efr_A 129 KQLEDKVEELLSK 141 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc
Confidence 9876555555444
No 5
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=96.80 E-value=0.047 Score=51.71 Aligned_cols=136 Identities=31% Similarity=0.395 Sum_probs=99.0
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhHH----------HHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHH-HHHHhhhhhh
Q 004861 543 QDKRDEIILKLIPRVRELHNQLHEWTE----------WANQKVMQAARRLSKDKAELKTLRQEKEEVER-LKKEKQILEE 611 (726)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqewtd----------WAnqKvmQaarRL~kdk~ELksLR~EkEE~er-lkKeKq~lEe 611 (726)
-..||-+|-+|-.-+..|++++.|-.+ =-+.||=|--.|=.--+.||-.||.|.+-+|| |.|--+.|--
T Consensus 6 aE~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 6 VEDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp -CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 356888999999999999999987654 24678888888888888899999998888876 3332222222
Q ss_pred h---------hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHH-HHH
Q 004861 612 N---------TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM-KFQ 681 (726)
Q Consensus 612 ~---------T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lk-k~q 681 (726)
| -+.||-|+|--|... .+-|-.|..-+-.||+|+|--||.+.|...|+-. +|=|.+.+| |++
T Consensus 86 n~~qQnQQSlDiRKLrELEADLKEK-------DsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~-LkvENE~vkerl~ 157 (167)
T 4gkw_A 86 NSQQQNQQSLDMRKLGELEADLKEK-------DSMVESLTETIGILRKELENEKLKAAENMDSFEK-LSMENENLKEKIA 157 (167)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hhHHHhHhhhhHHHHHHHHhHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhHHHHHH
Confidence 1 577888888777654 4467778888899999999999999999998744 344444443 444
Q ss_pred hHHHH
Q 004861 682 SWEKQ 686 (726)
Q Consensus 682 sWEkQ 686 (726)
.+..|
T Consensus 158 mYR~Q 162 (167)
T 4gkw_A 158 HYRAQ 162 (167)
T ss_dssp HHTTT
T ss_pred HHHHh
Confidence 44333
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.70 E-value=0.041 Score=66.19 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=56.2
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004861 623 ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVV 702 (726)
Q Consensus 623 AL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~ 702 (726)
.|++...+++.+.+.|..|+.|+++++.+.+.+.-.-.+-...+++... ....++.++++++.+|++.+.+-...+.
T Consensus 971 ~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777888888888888888887765444444444554442 3337788888888888887777776666
Q ss_pred HHHHH
Q 004861 703 QLLQE 707 (726)
Q Consensus 703 ~l~qe 707 (726)
+..++
T Consensus 1048 ~~~~~ 1052 (1080)
T 2dfs_A 1048 DQAKE 1052 (1080)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.50 E-value=0.0056 Score=73.76 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
++.+++..|.....+++.......++|.+..+++.+++.
T Consensus 928 ~l~ele~elee~ee~l~el~~e~~~le~el~~L~~elee 966 (1184)
T 1i84_S 928 ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966 (1184)
T ss_dssp HHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.15 E-value=0.096 Score=63.09 Aligned_cols=37 Identities=41% Similarity=0.389 Sum_probs=12.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhh
Q 004861 575 VMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEE 611 (726)
Q Consensus 575 vmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe 611 (726)
++|++-|--....+++.||.|...++++++.++-||.
T Consensus 892 ~iQs~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~ 928 (1080)
T 2dfs_A 892 YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928 (1080)
T ss_dssp HHHHHHHHHHHHHHTTTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3466666666677888888888888888888887774
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.10 E-value=0.078 Score=64.01 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
+.+++..|.....++++....+.+|+.+...|+.|++
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~ 895 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN 895 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344433333333333333333333
No 10
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.46 E-value=0.55 Score=50.47 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=77.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhh------------hhhhHHHHHhhhHHHHHHHHHH
Q 004861 588 ELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVER------------ANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 588 ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Qler------------Ans~vrrLE~EnA~lR~EmEAa 655 (726)
++..+++++...++-|++....-+.-++.+.||+..+..+-+|+|. -|..+.+.|...+++-.|+|.+
T Consensus 354 ~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (487)
T 3oja_A 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555555555444333343333445678888999999999999986 4444455554444444444432
Q ss_pred HHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 656 KLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (726)
Q Consensus 656 KL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q 717 (726)
+ +-.++.....+.|+.+++.++.||..-..+|....+.+.-|.++...
T Consensus 434 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 434 I--------------RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--------------hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 2 22445566788888999999999998888888888888877766543
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.10 E-value=2.5 Score=42.58 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHh---------hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEV---------ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~---------EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQ 686 (726)
.+.+++..+.+...+++.+.+.+.+.+. |...|.+|++.++.+-..-.....++..+-...-..+...+.+
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~ 133 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444332 3456778888888888777777777777776666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 004861 687 KALFQEELVTEKRKV 701 (726)
Q Consensus 687 K~lLQEELa~eK~Kl 701 (726)
...++++|...+..+
T Consensus 134 l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 134 MLELEKLALELESLV 148 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666776666555443
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.37 E-value=0.25 Score=53.98 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=43.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
++.++.+.+.+..+.++.+-...+--+.++.+-++-.+.-++++...++...|++|++..+.+|.++++++.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333344433333333333333334455554555555566777778888888899888888888887664
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.73 E-value=5.1 Score=53.62 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhHHHH
Q 004861 572 NQKVMQAARRLSKDKAELKTLRQEKEEV 599 (726)
Q Consensus 572 nqKvmQaarRL~kdk~ELksLR~EkEE~ 599 (726)
=+|..+++..+..-+.||..++.+.++.
T Consensus 1926 L~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1926 LKKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666655555543
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.30 E-value=3.7 Score=41.33 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
.+..++..+.++..+++-....++++|.++..++.-.+..+
T Consensus 40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 40 DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666677777777777777777776666555443
No 15
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.01 E-value=20 Score=40.75 Aligned_cols=173 Identities=15% Similarity=0.141 Sum_probs=115.8
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH-HHHhhhhHHH------------HHHHHHhHHHH-----------
Q 004861 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQA-ARRLSKDKAE------------LKTLRQEKEEV----------- 599 (726)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQa-arRL~kdk~E------------LksLR~EkEE~----------- 599 (726)
|...+.--+|..++.+.-.++..-.+=+..+--|+ -.+|...+.+ ...+.++++++
T Consensus 375 d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g~~~~~~~~~~~~~~Y~~~~~kg 454 (592)
T 1f5n_A 375 DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKG 454 (592)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHHHHHhcCCc
Confidence 55567777788888877777777666666554333 3444443333 12233333322
Q ss_pred -------HHHHHHhhhhhhh---hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHH
Q 004861 600 -------ERLKKEKQILEEN---TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEV 669 (726)
Q Consensus 600 -------erlkKeKq~lEe~---T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev 669 (726)
+.+=+.+..+++. |=+.|++.|.+|......-+.|....+.|+....++.+-||+-+.+=.|-.+...+=
T Consensus 455 ~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~k 534 (592)
T 1f5n_A 455 IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 534 (592)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333333 448888888888888888888888999999999999999999999999999999998
Q ss_pred HHHHHHhHHH-HHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 004861 670 SKREKKTQMK-FQSWEKQKALFQEELVTE--KRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 670 ~krekk~lkk-~qsWEkQK~lLQEELa~e--K~Kl~~l~qel~qak~~q~ 716 (726)
.++|++.+.+ .+..-..|.+-|++|..+ +.|...+++|+.+.++.+.
T Consensus 535 me~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 535 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888776554 344445555566666554 6777888888877766543
No 16
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.38 E-value=13 Score=35.83 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhHHHH----HHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHH
Q 004861 572 NQKVMQAARRLSKDKAELKTLRQEKEEV----ERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTA 647 (726)
Q Consensus 572 nqKvmQaarRL~kdk~ELksLR~EkEE~----erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~ 647 (726)
+.|.++|..|-+.-=.+|..+|++.+.. ..|-+.+..+..- ..++.+.+-.+.+...++.+....-...|.+...
T Consensus 5 StKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l-~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ 83 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTL-KRELSDRDDEVKRLREDIAKENELRTKAEEEADK 83 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666665522 1111111111111 1234445555555555555555555555556666
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 648 LRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 648 lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
|..|+|- |.|+ =+-|+=+---..-+.-..-|..-..|++.|.+-...|.-+|.+|...|..-..|+
T Consensus 84 ie~ElEe--LTas----LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 84 LNKEVED--LTAS----LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666653 3332 2222222222223334455667788999999999999999999998887654443
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.18 E-value=16 Score=36.32 Aligned_cols=118 Identities=21% Similarity=0.240 Sum_probs=78.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 004861 561 HNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRR 640 (726)
Q Consensus 561 q~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrr 640 (726)
+.++.-|++=|.+.- .++.-|+.|-+|.+..- -|||-+|. .+|++++...+.
T Consensus 9 ~ee~~ywk~~~~~~~-----------q~~~~le~El~EFqesS--------------rELE~ELE---~eL~~~Ek~~~~ 60 (189)
T 2v71_A 9 KEETAYWKELSMKYK-----------QSFQEARDELVEFQEGS--------------RELEAELE---AQLVQAEQRNRD 60 (189)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH--------------HHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH--------------HHHHHHHH---HHHHHHHHHHHH
Confidence 455666766665532 23444555555554331 13444444 366777778888
Q ss_pred HHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 641 LEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 641 LE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
|...|+.|+.|.+..|-.-..+- .-+.++-..||.||+.-+.....++..+-...+..+-+|.
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~-----------------~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQY-----------------AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88889999988888875443222 1345678889999998888888888888888888888775
Q ss_pred hhh
Q 004861 721 FFF 723 (726)
Q Consensus 721 ~w~ 723 (726)
.-|
T Consensus 124 ~~R 126 (189)
T 2v71_A 124 AKR 126 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.55 E-value=17 Score=35.64 Aligned_cols=70 Identities=24% Similarity=0.270 Sum_probs=43.7
Q ss_pred hhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 634 ANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 634 Ans~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
+.-.+..|++.+..|..|++..|-+-+. +.---++...|+-..||+|+-+.=||. -||..+|+.++|-..
T Consensus 88 ~se~~~elq~ri~~L~~El~~~k~~~~k-------~~~e~r~L~Ekl~~lEKe~a~~eid~~---~eLKalQ~~~eqE~~ 157 (168)
T 3o0z_A 88 DSEMIGDLQARITSLQEEVKHLKHNLEK-------VEGERKEAQDMLNHSEKEKNNLEIDLN---YKLKSLQQRLEQEVN 157 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHH
Confidence 4445567777777777777766644332 222345556677777888877775543 356677777776443
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.54 E-value=19 Score=48.42 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhh
Q 004861 587 AELKTLRQEKEEVERLKKEKQIL 609 (726)
Q Consensus 587 ~ELksLR~EkEE~erlkKeKq~l 609 (726)
.=|..|+.=.+.++.+|++-..+
T Consensus 1924 ~GL~KL~et~~~V~~l~~~L~~~ 1946 (3245)
T 3vkg_A 1924 IGLKKLRDTEAQVKDLQVSLAQK 1946 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544333
No 20
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=88.43 E-value=0.43 Score=53.76 Aligned_cols=124 Identities=17% Similarity=0.251 Sum_probs=39.7
Q ss_pred HHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHH
Q 004861 592 LRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSK 671 (726)
Q Consensus 592 LR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~k 671 (726)
-|+.||++||- ++.|| .||-+||..+++|...|.++.-++++|+.+......|.+----.+.|....++.+..
T Consensus 326 ~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 326 EIAARERAEKK---QQEYQ----DRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp CCCHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHh---HHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655 44444 599999999999999999999999999877654433333222223333333333322
Q ss_pred HHHHhHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 672 REKKTQM-------KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 672 rekk~lk-------k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
--.++.+ ++..-+-.-..|.+|-..--.-..+++++|..|+..+++...+.
T Consensus 399 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 399 TKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111 11122222233344433333344566666767766665554443
No 21
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=87.78 E-value=0.46 Score=37.81 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=33.7
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhccC
Q 004861 213 ELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDG 249 (726)
Q Consensus 213 GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am~~ 249 (726)
.=|.+|.+.||.++..++-++|..|+.|+-.||.+-.
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL 42 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4578999999999999999999999999999998754
No 22
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=85.51 E-value=6.9 Score=43.80 Aligned_cols=74 Identities=27% Similarity=0.262 Sum_probs=43.4
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
.+.....+|++|.+|-||.|-+=++.-+..-..+++ .++..+..+.++++=..|+++-++++++.+..+.
T Consensus 35 ~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~k----------Y~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 35 AVAANNAANAALTAENTAIKKRNADAKADYEAKLAK----------YQADLAKYQKDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777764444433333332222 4444455555666666677777777777776666
Q ss_pred HHHh
Q 004861 717 QLEV 720 (726)
Q Consensus 717 q~E~ 720 (726)
++|.
T Consensus 105 e~ek 108 (497)
T 3iox_A 105 ELEK 108 (497)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 6654
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.69 E-value=26 Score=32.07 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa 695 (726)
.+..|+-.|.+....+++....-..||.++..+..|+..-.++=.---..|.++-.+-.+..++-.-.|.+-.-|++.|.
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666655522221112344555555555555555556666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 004861 696 TEKRKVVQLLQELDQ 710 (726)
Q Consensus 696 ~eK~Kl~~l~qel~q 710 (726)
.+......|..+-.+
T Consensus 94 eeee~~~~L~~~kkk 108 (129)
T 2fxo_A 94 DEEEMNAELTAKKRK 108 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665554433
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=83.21 E-value=7.3 Score=36.03 Aligned_cols=69 Identities=25% Similarity=0.337 Sum_probs=54.0
Q ss_pred CCCCchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHh----HHHHHHHHHHhhhh
Q 004861 541 VPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQE----KEEVERLKKEKQIL 609 (726)
Q Consensus 541 Vp~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~E----kEE~erlkKeKq~l 609 (726)
+.+|+||.+|--|=.-|..|+.++..-+-=|+.-|.|--.|+..-.+||-.=|++ ++|.++|+.+...|
T Consensus 8 ~~~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 8 VNKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999888888777777776655 34466665555443
No 25
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.79 E-value=2.9 Score=38.76 Aligned_cols=65 Identities=8% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHH
Q 004861 601 RLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (726)
Q Consensus 601 rlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (726)
+||.+.+.|=-......+.|++-|....++|+-....+++.-+||..||.|++.....+.++...
T Consensus 26 ~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~ 90 (120)
T 3i00_A 26 GLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKA 90 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33333333333444555555555555555666666667788889999999999877766666544
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=82.73 E-value=17 Score=35.62 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHh
Q 004861 665 SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEK--------------RKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 665 sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK--------------~Kl~~l~qel~qak~~q~q~E~ 720 (726)
.|.|+-.+=......-..-|++.+-||-.|..|| .+|..|+.+|...+....+++.
T Consensus 49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~ 118 (168)
T 3o0z_A 49 LNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEG 118 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333333344444555555555555555 2566666666666665555554
No 27
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=82.32 E-value=35 Score=32.41 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHH-------HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 644 ENTALRQEMEAAKLRAAESAASCQEVSKREK-------KTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~ev~krek-------k~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
.+..|-.+..-||..|-++..-+.|+.+|-. ++-.|...-|..-.-|.+||..--.+|..|.-.-.++-+..+
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~ 132 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNY 132 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 3444555566666667777777777666533 223344444555556666666666666666666666666666
Q ss_pred HHHhhhhcC
Q 004861 717 QLEVFFFSF 725 (726)
Q Consensus 717 q~E~~w~q~ 725 (726)
.+|.+++.+
T Consensus 133 ~yee~I~~L 141 (147)
T 2b9c_A 133 HLENEVARL 141 (147)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
Confidence 666666543
No 28
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.76 E-value=32 Score=31.60 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=32.1
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHH
Q 004861 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEV 599 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~ 599 (726)
+-+|..++.-|..++-+|++=.++---++-.-...-..||..||.+++..
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l 54 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQL 54 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888887555444444444555566666666666644
No 29
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.70 E-value=37 Score=31.65 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 664 ASCQEVSKREKKTQMKFQSW-EKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 664 ~sc~ev~krekk~lkk~qsW-EkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
++|-....-=+.+|++-++| .++-..||.||.+-++||-....++++.+.-..
T Consensus 49 aTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 49 ATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 46666666666666666666 455667999999999988887777776654443
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.84 E-value=19 Score=30.63 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 681 qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
..-|+....+.+||.+-++||..|..+|.++...-.+...+
T Consensus 30 ~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 30 KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677888888888888888888776665554443
No 31
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=78.71 E-value=77 Score=34.51 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=11.3
Q ss_pred HHHhHHHHHhHHHHHHHHHHH
Q 004861 673 EKKTQMKFQSWEKQKALFQEE 693 (726)
Q Consensus 673 ekk~lkk~qsWEkQK~lLQEE 693 (726)
-...+..||..|.+++..--+
T Consensus 226 ~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 226 MEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666554433
No 32
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=77.86 E-value=39 Score=37.56 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 683 WEKQKALFQEELVTEKRKVVQLLQELDQ 710 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~Kl~~l~qel~q 710 (726)
-..+-..||..|...+.||.+|...+.+
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777776654
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.17 E-value=22 Score=38.07 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 004861 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKK 675 (726)
Q Consensus 619 EmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk 675 (726)
++|+...++....+.....+.+|+.||+.++++++-....-.+.-+-.+++..|+..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 445555555566666666777777788888888877777777777766666666554
No 34
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.78 E-value=6.5 Score=33.95 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004861 678 MKFQSWEKQKALFQEELVT------EKRKVVQLLQELDQAKALQEQLEVFFFS 724 (726)
Q Consensus 678 kk~qsWEkQK~lLQEELa~------eK~Kl~~l~qel~qak~~q~q~E~~w~q 724 (726)
.++...|.+...|+++|++ --.++..|+++++++++.-++.+.||-.
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999985 3579999999999999999999999954
No 35
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=75.94 E-value=3.5 Score=39.53 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=29.7
Q ss_pred HHHHHHhhhhhhhh-hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHH
Q 004861 600 ERLKKEKQILEENT-MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEM 652 (726)
Q Consensus 600 erlkKeKq~lEe~T-~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~Em 652 (726)
+.|+.++|++|.+. --|--=+|+.+...+-.++...++...++.+.+.++++.
T Consensus 43 ~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~ 96 (146)
T 2xnx_M 43 KKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEK 96 (146)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 34455555555542 122333455555566666666667777776666666653
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.35 E-value=25 Score=39.78 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 685 KQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 685 kQK~lLQEELa~eK~Kl~~l~qel 708 (726)
+++..||-=|.++..||.+|.-.+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777776543
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.31 E-value=19 Score=33.84 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=34.1
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
.+..|+.++.++..|+..-|-...+.- +++..-+++...|++|+.....++.+|+.+|.
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~--------------~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQ--------------IKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554433322 25555566666777777777777777766654
No 38
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=74.60 E-value=15 Score=32.28 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=34.9
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 670 SKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 670 ~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
-++++..|++| |.+|++||...+..|..|+.++...++..++++-
T Consensus 35 rqkekEqL~~L------Kkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAAL------KKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666664 5566899999999999999999988888877753
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.55 E-value=9.1 Score=35.06 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.8
Q ss_pred hhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 628 SGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 628 s~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
..++..++..+..||.+.+.+|.+|+.
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 457888899999999999999999975
No 40
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=74.36 E-value=60 Score=30.76 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=42.1
Q ss_pred HHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHH
Q 004861 590 KTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEV 669 (726)
Q Consensus 590 ksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev 669 (726)
....+.-+|.+|..|--..-+...-.|+..+|..|..|....+-|+--.....-..+-+-.+.+.|.=+|-.+-..|.++
T Consensus 27 eeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eL 106 (147)
T 2b9c_A 27 EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAEL 106 (147)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555443322222222333555555555555555555544444444444445555555544444444444444
Q ss_pred HHHHHHhHHHHHh
Q 004861 670 SKREKKTQMKFQS 682 (726)
Q Consensus 670 ~krekk~lkk~qs 682 (726)
-..=+-.-.++++
T Consensus 107 EeeL~~~~~nlKs 119 (147)
T 2b9c_A 107 EEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 41
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.35 E-value=11 Score=37.55 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=17.4
Q ss_pred HhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 626 KASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 626 kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
.+..|+|.|+-.|.+|-.||..|+.+.+
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999988
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.75 E-value=7 Score=35.99 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa 655 (726)
|.|+|.- -..+++.++..+..||.+.+.+|.+|+.-
T Consensus 68 l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 68 LEETKGR---YCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 24578888999999999999999999753
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=66.31 E-value=69 Score=28.17 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004861 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEV 720 (726)
Q Consensus 684 EkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~ 720 (726)
.+.-..|++|+..-...+..+++.|+.+...-.+.|+
T Consensus 50 ~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 50 QKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345555555555555555555555555554444
No 44
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.07 E-value=9.7 Score=42.95 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhh---hhhhHHHHHHHHHHhhhhhhh
Q 004861 557 VRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEEN---TMKKLSEMENALCKASGQVER 633 (726)
Q Consensus 557 v~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~---T~KrLsEmEnAL~kas~Qler 633 (726)
|+-++.|-+|.+ ++|-|+- .||.+++..=...-++++|.++. -+.+||. ++.-|.+.|.....--.++.+
T Consensus 302 ~qqm~~~a~e~~---~~~~~e~-~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~ 374 (575)
T 2i1j_A 302 VQQMKAQAREEK---LAKQAQR-EKLQLEIAARERAEKKQQEYQDR---LRQMQEEMERSQANLLEAQDMILRLEEQLRQ 374 (575)
T ss_dssp HHHHHHHHHHHH---HHHHHHH-TTCCSCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555543 3344443 34665554444444444444433 2333343 344555555555566667777
Q ss_pred hhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 004861 634 ANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW-------EKQKALFQEELVTEKRKVVQLLQ 706 (726)
Q Consensus 634 Ans~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsW-------EkQK~lLQEELa~eK~Kl~~l~q 706 (726)
|.....+||.+..++..+|+.-+.++.-++..=..+..+-.......... +.+...||+|+..-+....+..+
T Consensus 375 ~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~ 454 (575)
T 2i1j_A 375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAA 454 (575)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788877777777777766665555443333322222222222222 33444555555555554444444
Q ss_pred HH
Q 004861 707 EL 708 (726)
Q Consensus 707 el 708 (726)
+|
T Consensus 455 ~l 456 (575)
T 2i1j_A 455 AL 456 (575)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 45
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=65.23 E-value=64 Score=36.26 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHhhhHHHHHHHHHHHHhHHHhHHHHHHHH----HHHHHhHHHHHhHHHHHHHHHHHHH
Q 004861 641 LEVENTALRQEMEAAKLRAAESAASCQEVS----KREKKTQMKFQSWEKQKALFQEELV 695 (726)
Q Consensus 641 LE~EnA~lR~EmEAaKL~A~ES~~sc~ev~----krekk~lkk~qsWEkQK~lLQEELa 695 (726)
++.||+.||+.=++||-.=-.-.+..++.+ +...+...++..|+..++..+.+|+
T Consensus 46 i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 46 LTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555443222233333332 2333444555566666666665555
No 46
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=64.41 E-value=23 Score=38.71 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=16.2
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 004861 610 EENTMKKLSEMENALCKASGQVERANSAVRRLE 642 (726)
Q Consensus 610 Ee~T~KrLsEmEnAL~kas~QlerAns~vrrLE 642 (726)
|.+.-|.|.+||+.|. ||+...+.|..|-
T Consensus 33 e~~V~~~l~~LE~~l~----elsn~ts~v~~Lv 61 (409)
T 1m1j_C 33 RLTTDGELLEIEGLLQ----QATNSTGSIEYLI 61 (409)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4555667777777776 3344444444433
No 47
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=63.89 E-value=44 Score=28.85 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 004861 598 EVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 598 E~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa 655 (726)
|++.||..+..|| .+|.|+|.-. ..|++..+..+-.||.+.+.+|.+|+.-
T Consensus 4 eie~L~~q~~~Le----~~l~e~E~~~---~~~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 4 QLSQLQCQLAAKE----AKLRDLEDSL---ARERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp --------CTTHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555664 4578888854 5689999999999999999999999753
No 48
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=63.71 E-value=78 Score=27.92 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=59.9
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 004861 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (726)
Q Consensus 621 EnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~K 700 (726)
+..|.+...+=.++-.....||.+.+.+..|+++....+ ..+-..|.+..+..-.-..|.+-+|+|+..-..+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~-------~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEA-------ERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455566778888888888887766533 2344566666677777778889999999999999
Q ss_pred HHHHHHHHHHHH
Q 004861 701 VVQLLQELDQAK 712 (726)
Q Consensus 701 l~~l~qel~qak 712 (726)
+.-.+..|.+.+
T Consensus 83 ~~~~~~qLdkL~ 94 (96)
T 3q8t_A 83 MRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 998888887754
No 49
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=63.34 E-value=80 Score=27.92 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
..+.|.-+..+....+++..-|.-|.-.|..+..|+|.
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444443
No 50
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=62.95 E-value=9.7 Score=32.53 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=35.3
Q ss_pred HHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhcc
Q 004861 210 ILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248 (726)
Q Consensus 210 SL~GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am~ 248 (726)
-|..+|..++..||+|..+-+..||.-.+-|+..+|..-
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~L 50 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNI 50 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 366899999999999999999999999999999988754
No 51
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.61 E-value=1.4e+02 Score=29.69 Aligned_cols=135 Identities=24% Similarity=0.315 Sum_probs=78.3
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHH-------HHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 004861 549 IILKLIPRVRELHNQLHEWTEWANQ-------KVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEME 621 (726)
Q Consensus 549 milkLv~rv~eLq~qlqewtdWAnq-------KvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmE 621 (726)
....+..++.+|+.++.+..+=-.+ =+-|+-.|+..-+..+..|+.|.++... .-+..--...+-++.++
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~---K~~~~~~e~~~~~~~Lq 94 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKE---KLEHQYAQSYKQVSVLE 94 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566788899999999888765432 2334445555555566666666555421 11111112233566777
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004861 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKV 701 (726)
Q Consensus 622 nAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl 701 (726)
..|.......+.-...+|.||..|-.| |.+......|..-. -.|=...+ -..++|+.||. ||..+
T Consensus 95 ~el~~l~~~~~~l~~~ireLEq~NDdl----Er~~R~~~~SleD~---e~kln~ai-------Er~alLE~El~-EKe~l 159 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVRELEQANDDL----ERAKRATIMSLEDF---EQRLNQAI-------ERNAFLESELD-EKESL 159 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHH-------HHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHhhHHHH---HHHHHHHH-------HHHHHHHHHHH-HHHHH
Confidence 777777777888888888888888765 44444444444322 22222222 24677777776 35543
No 52
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.36 E-value=1.1e+02 Score=29.56 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQE 692 (726)
.+-|-+.+|-.|..+..+++.+...+..||.....++. ....+..|+.+...|++
T Consensus 11 Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~-------------------------l~~~~~~~~~e~~~L~~ 65 (154)
T 2ocy_A 11 SVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT-------------------------LKRELSDRDDEVKRLRE 65 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-------------------------HHTHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHhhhhHHHHHHHH
Confidence 34455666666666666666666666666654433222 11223457777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004861 693 ELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 693 ELa~eK~Kl~~l~qel~qa 711 (726)
+|..|+.+-....+++.++
T Consensus 66 ~l~~E~~~R~~aE~~~~~i 84 (154)
T 2ocy_A 66 DIAKENELRTKAEEEADKL 84 (154)
T ss_dssp HHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777776655555444443
No 53
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=58.79 E-value=21 Score=28.66 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=36.1
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 670 SKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 670 ~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
-+|...++..+..-|+|-+.|.|-|= +++|++|.++|+++++
T Consensus 5 errr~e~ld~l~~LEkqF~~LkEqlY--~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 5 ERRRSECVSEMLDLEKQFSELKEKLF--RERLSQLRLRLEEVGA 46 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHc
Confidence 37888999999999999999999885 5679999999998764
No 54
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.84 E-value=67 Score=27.56 Aligned_cols=73 Identities=8% Similarity=0.126 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhhhhhhh-hhh-H------HHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 585 DKAELKTLRQEKEEVERLKKEKQILEENT-MKK-L------SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 585 dk~ELksLR~EkEE~erlkKeKq~lEe~T-~Kr-L------sEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
=...+..|..++.|++...+|-..|++++ .-| + ...+.|+..-...++.....+.+|+.+...++.+|+..|
T Consensus 20 l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 20 ISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888899999988875 111 1 123444444445555556788888888888888887655
Q ss_pred H
Q 004861 657 L 657 (726)
Q Consensus 657 L 657 (726)
-
T Consensus 100 ~ 100 (107)
T 1fxk_A 100 V 100 (107)
T ss_dssp H
T ss_pred H
Confidence 3
No 55
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.37 E-value=1.4e+02 Score=28.62 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhHH
Q 004861 620 MENALCKASGQVERANSAVRRLEVENTA 647 (726)
Q Consensus 620 mEnAL~kas~QlerAns~vrrLE~EnA~ 647 (726)
+|..|.+|--.++.|.+-++.||.+.-.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~ 53 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKT 53 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888876544
No 56
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=56.31 E-value=84 Score=28.36 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=38.1
Q ss_pred hhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (726)
Q Consensus 629 ~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~ 705 (726)
.||-||.-..|+-|++-+-|. .++-..++-+++||.- -|-|.++-..||.||++-++||-.+.
T Consensus 25 ~qLT~Aq~~l~~~eaQAaTCN-----------qTV~tL~~SL~kekaq---~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 25 RQLTRTQDSLLQAETQANSCN-----------LTVVTLQESLEKKVSQ---ALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655555444433333 3444455556666543 44556777888999988888776654
No 57
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.08 E-value=1.1e+02 Score=33.58 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 682 sWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
..|++.+.||+-+..+=..|..||..|++...-.+.+|..+
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777776666666666666666666556666543
No 58
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=55.31 E-value=1.2e+02 Score=27.26 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQE 692 (726)
+|.-.|+|++|..--+|-+.-|-.++.|+..+-+.=+-++--||---+=.. |+--.||.|+.|.=
T Consensus 24 ~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~--------------RLsKtEKDkAiLEL 88 (101)
T 1d7m_A 24 IKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEA--------------RLAKTEKDRAILEL 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH--------------HHhhhhhHHHHHHH
Confidence 555567788888888888888888888888887776666665654444333 66667888887753
No 59
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.25 E-value=72 Score=26.35 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=39.2
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 004861 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa 655 (726)
|.-+|.+-|+. ..|-++.+|.--..|+.|+.....+-+..|..+..-+.+|...+..|..|+++.
T Consensus 11 l~eiRaQYE~i--a~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 11 MRDVRQQYESV--AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666654 234555667767778888877766666666655555555555555555555543
No 60
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=54.95 E-value=10 Score=38.73 Aligned_cols=65 Identities=14% Similarity=0.270 Sum_probs=34.1
Q ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHH
Q 004861 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (726)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR 649 (726)
.|..-+++|...+.+.+..+.|.+.. --+...|.+.+.++..+..+++.+.+.++.++.+...++
T Consensus 85 ~l~~a~~~~~~a~~~~~r~~~L~~~~----~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 85 QLVARKTAYDVALSNYQRLSKLYGQK----ATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAE 149 (369)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHGGGSS----CSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC----CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444442221 114556666777777777666666655555544443333
No 61
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=53.21 E-value=1.8e+02 Score=28.70 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-HHhhhhHHHHHHHHHhHHHHH
Q 004861 555 PRVRELHNQLHEWTEWANQKVMQAA-RRLSKDKAELKTLRQEKEEVE 600 (726)
Q Consensus 555 ~rv~eLq~qlqewtdWAnqKvmQaa-rRL~kdk~ELksLR~EkEE~e 600 (726)
.|.+.++..+++-.+|-.++--+.. .-+++|+++.+.|-++++..+
T Consensus 3 ~~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le 49 (322)
T 1u4q_A 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLE 49 (322)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHH
Confidence 3677888889999999888665543 246889999998888877543
No 62
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.51 E-value=1.4e+02 Score=27.20 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=27.9
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHH
Q 004861 609 LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKA 688 (726)
Q Consensus 609 lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~ 688 (726)
+|.--..|+.|+.....+-+..|..+..-+.+|-..+..|+.|+++.|-.-.-=..+..++-.+-.. .+..+...-.
T Consensus 9 aE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~ 85 (129)
T 3tnu_B 9 AESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLA 85 (129)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3444555666666655555555544444444444444444444443322211111222222222222 2223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004861 689 LFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 689 lLQEELa~eK~Kl~~l~qel~ 709 (726)
.|.+||..-|..+....++.+
T Consensus 86 ~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 86 ELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 455555555555554444433
No 63
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=52.26 E-value=24 Score=36.02 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004861 694 LVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 694 La~eK~Kl~~l~qel~qa 711 (726)
|..-+..|.+++.+|+++
T Consensus 131 ~~~~~~~l~~~~~~l~~a 148 (369)
T 4dk0_A 131 MDVVQENIKQAEIEVNTA 148 (369)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444433
No 64
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=52.16 E-value=12 Score=30.00 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=23.6
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhH
Q 004861 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVENT 646 (726)
Q Consensus 611 e~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA 646 (726)
.+++|++.|+|.-|+|+.. .+.+||-||-
T Consensus 10 v~~Rkk~eeler~lrk~kk-------~iKklEdeNP 38 (50)
T 1a92_A 10 VSGRKKLEELERDLRKLKK-------KIKKLEEDNP 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHhhhccCC
Confidence 4689999999999998766 6778888773
No 65
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.75 E-value=45 Score=30.12 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH--hhhhhhh------------hhhhHHHHHhhhHH
Q 004861 582 LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK--ASGQVER------------ANSAVRRLEVENTA 647 (726)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k--as~Qler------------Ans~vrrLE~EnA~ 647 (726)
+.+-+.++.+|++|.+ +|+ +++.++|--|.+ -.|.-+. |..+.+..+.+...
T Consensus 14 ~~~lr~ei~~Le~E~~---rLr-----------~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~ 79 (100)
T 1go4_E 14 ADTLRLKVEELEGERS---RLE-----------EEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQ 79 (100)
T ss_dssp HHHHHHHHHHHHHHHH---HHH-----------HHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHH-----------HHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHH
Confidence 4444555566666544 333 334444444544 3355555 33445566777777
Q ss_pred HHHHHHHHHH
Q 004861 648 LRQEMEAAKL 657 (726)
Q Consensus 648 lR~EmEAaKL 657 (726)
|++|+|.-|.
T Consensus 80 Lq~E~erLr~ 89 (100)
T 1go4_E 80 LQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776553
No 66
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=51.34 E-value=1.3e+02 Score=33.61 Aligned_cols=15 Identities=13% Similarity=-0.004 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHhhhh
Q 004861 616 KLSEMENALCKASGQ 630 (726)
Q Consensus 616 rLsEmEnAL~kas~Q 630 (726)
++.++....++...+
T Consensus 71 ~~~~ld~~~r~~~~~ 85 (501)
T 1wle_A 71 GIISTWQELRQLREQ 85 (501)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 67
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.18 E-value=15 Score=29.91 Aligned_cols=38 Identities=13% Similarity=-0.091 Sum_probs=33.2
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhccCC
Q 004861 213 ELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDGD 250 (726)
Q Consensus 213 GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am~~~ 250 (726)
.-+..|++.||.++....-.-|..++.|+..||.+-..
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 56788999999999998888888999999999987643
No 68
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.91 E-value=1.5e+02 Score=27.00 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=6.6
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhh-------hhhHHHHHhhhHHHH
Q 004861 609 LEENTMKKLSEMENALCKASGQVERA-------NSAVRRLEVENTALR 649 (726)
Q Consensus 609 lEe~T~KrLsEmEnAL~kas~QlerA-------ns~vrrLE~EnA~lR 649 (726)
+|.--..|+.|+.....+-+..|..+ +..|++|+.|+..++
T Consensus 11 aE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~ 58 (131)
T 3tnu_A 11 AEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQL 58 (131)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666665555544444444 444444444444443
No 69
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=49.61 E-value=1.6e+02 Score=33.27 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHH
Q 004861 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (726)
Q Consensus 613 T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~E 661 (726)
.+-+++-.|+++...+.||.+.+...+..+-...++.+|.+.++-++++
T Consensus 361 ArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~ 409 (602)
T 1cii_A 361 ARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSG 409 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567888899999999999999998888888888888787777555533
No 70
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=49.19 E-value=3e+02 Score=31.55 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.0
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHh
Q 004861 543 QDKRDEIILKLIPRVRELHNQLHEW 567 (726)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqew 567 (726)
.++|+++|...+.++.++.+++...
T Consensus 377 ~e~k~~lvr~~~~~~~~~~~~l~~~ 401 (704)
T 2xs1_A 377 NQRKADLVNRSIAQMREATTLANGV 401 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999888877654
No 71
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=49.17 E-value=12 Score=37.96 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 004861 582 LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLE 642 (726)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE 642 (726)
|..-+++|...+.+.+..++|.+.. --+...|.+.+.++..+..|++.+.+.+..++
T Consensus 85 l~~a~~~~~~a~~~~~r~~~L~~~~----~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~ 141 (341)
T 3fpp_A 85 RQQAEAELKLARVTYSRQQRLAQTQ----AVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQ 141 (341)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTS----SSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444443221 11445555566666655555555555444444
No 72
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=47.41 E-value=51 Score=26.31 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=27.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qa 711 (726)
.+--||+-..|.+||..+|.|...+.++|.|+
T Consensus 14 V~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34456788899999999999999999999885
No 73
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.24 E-value=45 Score=29.43 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=27.0
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (726)
Q Consensus 669 v~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qe 707 (726)
+..-|...+..|..-|++++.|-.||.+.+....+|.++
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 344455556677788888888888888777766666543
No 74
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=47.15 E-value=1.3e+02 Score=25.57 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 004861 599 VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 599 ~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa 655 (726)
.+-+|..+..||. .|.|+|.-. ..++..++..+..||.+.+.+|.+|+.-
T Consensus 3 l~~l~~~~~sLE~----~l~e~e~~~---~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 3 VDALKGTNESLER----QMREMEENF---AVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555543 366777655 4578888999999999999999999754
No 75
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=47.06 E-value=1.4e+02 Score=27.57 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=16.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (726)
Q Consensus 678 kk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~q 710 (726)
.+.+..+-|-....++..+|+.---.++.+.++
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~ 94 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEY 94 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHH
Confidence 344555555555555555555444444444333
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.66 E-value=1.6e+02 Score=31.24 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=0.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHH------------HHHHHHHhhhhhhhhh
Q 004861 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEE------------VERLKKEKQILEENTM 614 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE------------~erlkKeKq~lEe~T~ 614 (726)
++.+-++..+++++=.+. +|+......++-|-++++|++.==.+.|. -+-|.|++---+
T Consensus 372 eeal~~~~~~i~~~l~~~-----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 442 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGL-----RAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---- 442 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhh-----HHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH----
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHH
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRL 641 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrL 641 (726)
||+.|+|+.|.+-..||+-+.+.|.||
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 77
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=46.65 E-value=1.5e+02 Score=33.38 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
++||.+--|.|.++..-|...++.|-++..|.-.....++|
T Consensus 355 rQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a 395 (602)
T 1cii_A 355 RQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNA 395 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999998988888888777765554444433
No 78
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.38 E-value=1.5e+02 Score=25.95 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=5.8
Q ss_pred HHHHHHhHHHH
Q 004861 589 LKTLRQEKEEV 599 (726)
Q Consensus 589 LksLR~EkEE~ 599 (726)
+.+||.|+|.+
T Consensus 11 m~~lk~e~e~a 21 (101)
T 3u59_A 11 MQMLKLDKENA 21 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 79
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=45.42 E-value=81 Score=29.54 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
.|-+..-.+..+..+++....-+..|+.++..|-.|++.
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555556666666666666677777777776666654
No 80
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=45.28 E-value=2.2e+02 Score=27.49 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHH
Q 004861 617 LSEMENALCKASGQVERANSAVRRLEVENTAL 648 (726)
Q Consensus 617 LsEmEnAL~kas~QlerAns~vrrLE~EnA~l 648 (726)
+..+--++--..-|+..+....++|+.||..|
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666777777777777777655
No 81
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.39 E-value=90 Score=28.12 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
+++++.-.+++|+.+++. |+.+...|+++|..|+.+-....+++.
T Consensus 6 ~~e~lre~l~~le~~~~~-----------------------------------~~~e~~~L~~~l~eE~~~R~~aE~~~~ 50 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSD-----------------------------------RDDEVKRLREDIAKENELRTKAEEEAD 50 (97)
T ss_dssp CHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-----------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhc
Q 004861 710 QAKALQEQLEVFFFS 724 (726)
Q Consensus 710 qak~~q~q~E~~w~q 724 (726)
++.+--+.+=+-.+.
T Consensus 51 ~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 51 KLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 82
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=44.33 E-value=1.3e+02 Score=26.36 Aligned_cols=59 Identities=31% Similarity=0.408 Sum_probs=34.4
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
-||-||.+|+.|..+.+.-+ .. +.. .-..+++.||..-+.+|..+..+-+++.-..+
T Consensus 24 KVR~LEqqN~~Le~~i~~l~--~~------------~~~---------~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLK--GQ------------GKS---------RLGDLYEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HH------------HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--hc------------cCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999976654322 11 100 12245666777777777666666555544433
Q ss_pred HH
Q 004861 717 QL 718 (726)
Q Consensus 717 q~ 718 (726)
.+
T Consensus 81 nl 82 (93)
T 3s4r_A 81 NL 82 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 83
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=42.72 E-value=2e+02 Score=26.41 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 680 FQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
|++=..-+-++++|+..-...|..||+++.
T Consensus 78 F~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 78 FQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444444455666666666666666666553
No 84
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.27 E-value=1.7e+02 Score=25.37 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=16.4
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 623 ALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 623 AL~kas~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
.+.....+++..+....+++.++..+++.++-
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444555566666666665543
No 85
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.95 E-value=1.6e+02 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHh
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEV 643 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~ 643 (726)
.||+.-|++-+.+|..+++.++.-++..|.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~ 34 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666555555443
No 86
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.24 E-value=8.9 Score=32.22 Aligned_cols=40 Identities=8% Similarity=-0.094 Sum_probs=34.4
Q ss_pred HHHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhcc
Q 004861 209 YILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248 (726)
Q Consensus 209 RSL~GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am~ 248 (726)
..+...|..|++.||.+......|-|..++.|+..||..-
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445678889999999999999999999999999998753
No 87
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.06 E-value=2.1e+02 Score=26.06 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=47.4
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
...+|..|...|..++++-+=..++...-|..+.++....-.++.-.+....-..+....--.+-..+++++...+...+
T Consensus 42 ~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 42 KMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777766655555555544444433333333333334444444444444
Q ss_pred HHH
Q 004861 717 QLE 719 (726)
Q Consensus 717 q~E 719 (726)
..|
T Consensus 122 d~e 124 (129)
T 2fxo_A 122 DLE 124 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 88
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.99 E-value=1.8e+02 Score=25.15 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHh
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (726)
+.+..|+-.|.++...+++.......||..+..|-.|...--++
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677777777777777777777777777666665554444
No 89
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=40.75 E-value=2.3e+02 Score=27.94 Aligned_cols=63 Identities=16% Similarity=0.352 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh
Q 004861 554 IPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA 627 (726)
Q Consensus 554 v~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka 627 (726)
++.+++++.++..+..+|.+ |..-...|..+| ..++.+=.+-+.|+..=+++..+|..+|..-
T Consensus 61 l~~~q~~~~~~e~l~s~ae~--------ll~l~~~Le~~r---~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~ 123 (192)
T 2p22_C 61 FNPLTDFAGKIHAFRDQFKQ--------LEENFEDLHEQK---DKVQALLENARILESKYVASWQDYHSEFSKK 123 (192)
T ss_dssp GSCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678888888887444443 322223444444 4444445567777888899999998888443
No 90
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=40.69 E-value=1e+02 Score=31.31 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh------------hhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhH
Q 004861 598 EVERLKKEKQILEENTMKKLSEMENALCKASGQ------------VERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (726)
Q Consensus 598 E~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Q------------lerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (726)
|-+++++-|+.||+.=|+|.+++-....-|-.| .+|=...|.-||.|.+.-|+++++.=+.-++..
T Consensus 26 EH~~f~~Ak~rLe~~hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v~aLE~E~~~ErqqL~etH~~RV~a~ 103 (219)
T 3pmr_A 26 EHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVETHATRVIAL 103 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888877766655555444 345556788899999999999887766555443
No 91
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.05 E-value=1e+02 Score=33.83 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=24.1
Q ss_pred HHHHHHhHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhhhhhhhh
Q 004861 589 LKTLRQEKEEVERLKKEKQILE-ENTMKKLSEMENALCKASGQVERA 634 (726)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lE-e~T~KrLsEmEnAL~kas~QlerA 634 (726)
++-+|...|.+.+--+-+...+ .....++.++...-++...++|..
T Consensus 4 ~~~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l 50 (455)
T 2dq0_A 4 IKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRL 50 (455)
T ss_dssp HHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776655444343212 223455666666666555544433
No 92
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=39.29 E-value=4.9e+02 Score=29.78 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-hhh-hHHHHHHHHHhHHHH
Q 004861 556 RVRELHNQLHEWTEWANQKVMQAARR-LSK-DKAELKTLRQEKEEV 599 (726)
Q Consensus 556 rv~eLq~qlqewtdWAnqKvmQaarR-L~k-dk~ELksLR~EkEE~ 599 (726)
.++.++..+.+-..|..++--..+.- .+. |+++.+.|-+.++..
T Consensus 371 l~~~F~~~~~~~~~Wl~~~e~~l~~~~~g~~dl~~v~~ll~kh~~f 416 (863)
T 1sjj_A 371 LAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAF 416 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHH
Confidence 34556667777888887766554432 343 777777777766544
No 93
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.78 E-value=23 Score=36.61 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=33.9
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 672 REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 672 rekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
|-+.....+...+.|-.+|.++|..-+++|.+|++|+++.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445667788888888899999999999999999998865
No 94
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.58 E-value=78 Score=27.68 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 685 KQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 685 kQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
.--.+||.||.+.|.|-..|.++.+.++.
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888887776555544333
No 95
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.94 E-value=1.9e+02 Score=25.05 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhhhhhh--hhhH------HHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 004861 583 SKDKAELKTLRQEKEEVERLKKEKQILEENT--MKKL------SEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (726)
Q Consensus 583 ~kdk~ELksLR~EkEE~erlkKeKq~lEe~T--~KrL------sEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEA 654 (726)
..=...+..|..++.|++...+|-..|++++ .+-+ ...+.|+..-...++.....+.+|+.+...++.+|+.
T Consensus 23 ~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 23 QLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667778888888888888888888764 1111 1344455555555666677788888888888888776
Q ss_pred HHH
Q 004861 655 AKL 657 (726)
Q Consensus 655 aKL 657 (726)
.|-
T Consensus 103 lk~ 105 (117)
T 2zqm_A 103 LTA 105 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 96
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=36.60 E-value=2.1e+02 Score=25.50 Aligned_cols=104 Identities=10% Similarity=0.151 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHH
Q 004861 607 QILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (726)
Q Consensus 607 q~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQ 686 (726)
+.|=+-..++..+...+|..+..+++.+..-+..|+....+.+.++...--... ++. .++.|..-
T Consensus 11 ~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~-~~~--------------~l~~~~~f 75 (150)
T 3ajw_A 11 ETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGI-ASN--------------RWINYQQF 75 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGG-GHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHH--------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 004861 687 KALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFFSF 725 (726)
Q Consensus 687 K~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~q~ 725 (726)
...|...|...+..|..++++++++++.=.+...+-+-|
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~ 114 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAW 114 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 97
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.20 E-value=2.5e+02 Score=26.54 Aligned_cols=115 Identities=21% Similarity=0.266 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHH
Q 004861 582 LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (726)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~E 661 (726)
|+.-+..++.|=..+++..+++++.. ..+..+.+...++.+....-..-|.++..|..|+|- |.|+
T Consensus 17 l~~~~~~~~~le~l~~~l~~l~~~l~-----------~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~--LTas- 82 (135)
T 2e7s_A 17 IASQKAAIENYNQLKEDYNTLKRELS-----------DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED--LTAS- 82 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-----------THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH--HHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-
Confidence 33334444444444444444444432 333334444455555555555555555556565553 2221
Q ss_pred hHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 662 SAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 662 S~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
=+-|+=+---..-+.-..-|+.-..|++.|.+-...|.-+|.+|...|.
T Consensus 83 ---LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 83 ---LFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp ---HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222233444555667777777777777777777766554
No 98
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.20 E-value=2.7e+02 Score=25.95 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHH
Q 004861 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR 649 (726)
.|++.|++..|..-..+|..|-+.|.||..+|-.+.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 345666676666666666666666666555554443
No 99
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=36.17 E-value=68 Score=34.83 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=13.9
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQ 594 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELksLR~ 594 (726)
.|..|..||+.+|.+=.=|.+++ .+++|+++..+|+.+=.
T Consensus 21 ~~~~r~~el~~~l~~p~~~~d~~---~~~~~~ke~~~l~~~v~ 60 (371)
T 1zbt_A 21 AVEDRYEELGELLSDPDVVSDTK---RFMELSREEANSRETVA 60 (371)
T ss_dssp HHHHHHHHC-----------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhCHH---HHHHHHHHHHHHHHHHH
Confidence 57889999999999988888864 34566666666654433
No 100
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.68 E-value=1.8e+02 Score=33.12 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=15.9
Q ss_pred CcccccCCC-----CchhHHHHHHhHHHHHHHHHHH
Q 004861 535 TSLEHLVPQ-----DKRDEIILKLIPRVRELHNQLH 565 (726)
Q Consensus 535 ~~~~~~Vp~-----D~KDEmilkLv~rv~eLq~qlq 565 (726)
++||.--|- +-=|+.=.+|-.||.||.++|.
T Consensus 39 eDwGvkCPSGCrLQglLdkqErDltkrINELKnqLE 74 (562)
T 3ghg_A 39 EDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLF 74 (562)
T ss_dssp SSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCcccchhhhHHhhcCcHHHHHHHHHHHHH
Confidence 566666663 3334444455555555555543
No 101
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=34.61 E-value=58 Score=32.08 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 683 WEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 683 WEkQK~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
-+++-..|++||..+|.|-..++++|.|.=
T Consensus 140 LqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 140 NEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999998853
No 102
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.56 E-value=2.4e+02 Score=24.84 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=17.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 678 kk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
+|++.-|.+...+++.|.+-+.||-.-.+...
T Consensus 51 kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 51 KQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566655555555555544444
No 103
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=34.42 E-value=2.8e+02 Score=25.55 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=31.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhhcC
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQEL-----------DQAKALQEQLEVFFFSF 725 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel-----------~qak~~q~q~E~~w~q~ 725 (726)
..+..-++-..|++||...+..|..|...- ..++....++..+|..|
T Consensus 140 ~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~l 197 (213)
T 1cun_A 140 AIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDL 197 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 344444555667888888888887776654 23666777888888764
No 104
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=33.24 E-value=3.6e+02 Score=26.45 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=6.3
Q ss_pred hHHHHHhHHHHHH
Q 004861 676 TQMKFQSWEKQKA 688 (726)
Q Consensus 676 ~lkk~qsWEkQK~ 688 (726)
.+..||.+|.++.
T Consensus 217 ~~~~lQ~le~~r~ 229 (305)
T 2efl_A 217 IFQKIQEMEERRI 229 (305)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555543
No 105
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=33.10 E-value=59 Score=28.25 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=31.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
..-+.||+-.-|.++|..+|.|...++++|.|+=
T Consensus 38 ~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 38 NYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998863
No 106
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=31.96 E-value=3.6e+02 Score=26.05 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004861 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEVFFF 723 (726)
Q Consensus 681 qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E~~w~ 723 (726)
.-+.+--..||+|+.+-.--+..+.+.+.+.+.--+++=.||-
T Consensus 92 ~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 92 ALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555678888888887777777777777766666666774
No 107
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=31.67 E-value=51 Score=31.11 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 004861 695 VTEKRKVVQLLQELD 709 (726)
Q Consensus 695 a~eK~Kl~~l~qel~ 709 (726)
.+||+|+++||---.
T Consensus 79 ~eEKrkLAqLQ~AY~ 93 (130)
T 3cl3_D 79 SEEKRKLAQLQVAYH 93 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346666666664433
No 108
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.52 E-value=3.8e+02 Score=29.29 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004861 688 ALFQEELVTEKRKVVQL 704 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~~l 704 (726)
..||+-|...+.||.+|
T Consensus 108 ~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 108 QQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33444343333333333
No 109
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=30.38 E-value=3.5e+02 Score=25.44 Aligned_cols=43 Identities=19% Similarity=0.426 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-HHhhhhHHHHHHHHHhHHHHHH
Q 004861 559 ELHNQLHEWTEWANQKVMQAA-RRLSKDKAELKTLRQEKEEVER 601 (726)
Q Consensus 559 eLq~qlqewtdWAnqKvmQaa-rRL~kdk~ELksLR~EkEE~er 601 (726)
.+..++.+-.+|-++|.--+. .-++.|+..++.|++..++.++
T Consensus 5 ~f~~~~~~l~~Wl~~ke~~l~~~~~g~dl~~v~~l~~k~~~f~~ 48 (218)
T 3edu_A 5 QLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFAR 48 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHHHHH
Confidence 344555555667666544332 3567899999999888776643
No 110
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.24 E-value=1.9e+02 Score=25.03 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=44.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 639 RRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (726)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel 708 (726)
|||--++....+||++-|.-- .|+.+=..|--.-+.-.+.+++.|+..|...|.|..+|.+.|
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~-------~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTE-------EDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777788888887766432 233333334444567788999999999999999988876543
No 111
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.41 E-value=2.9e+02 Score=24.29 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=34.0
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 004861 601 RLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (726)
Q Consensus 601 rlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAa 655 (726)
.|++.+..|| .+|.|||.-+. .|++..+..+..||.+.+.+|.+|+.-
T Consensus 16 ~Lq~~~~~LE----~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 16 QGQKESRACL----ERIQELEDLLA---KEKDNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp --CCCCHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454 35777777554 477888889999999999999999764
No 112
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=29.07 E-value=1.7e+02 Score=31.07 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhh-----HHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHH
Q 004861 596 KEEVERLKKEKQILEENTMKK-----LSEMENALCKASGQVERANSAVRRLEVENTALRQEM 652 (726)
Q Consensus 596 kEE~erlkKeKq~lEe~T~Kr-----LsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~Em 652 (726)
+++++.|++.++.-.++|-+| |+. =.||.-+..||.-.-+...+|+++...|++-|
T Consensus 329 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~ 389 (406)
T 4dyl_A 329 QEMVTQLQQELRNEEENTHPRERVQLLGK-RQVLQEALQGLQVALCSQAKLQAQQELLQTKL 389 (406)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCGGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCcchHHHHHhH-HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445666666677666666665 553 35788889999999999999998877666544
No 113
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=28.88 E-value=3.2e+02 Score=24.55 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=11.1
Q ss_pred hhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 630 QVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
||..+..+.-.++-+..+|..+|+-++
T Consensus 16 qL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 16 QVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444
No 114
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.85 E-value=61 Score=26.59 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=10.0
Q ss_pred HHHhhhhhhh--hhhhHHHH
Q 004861 603 KKEKQILEEN--TMKKLSEM 620 (726)
Q Consensus 603 kKeKq~lEe~--T~KrLsEm 620 (726)
|+=+++||+. .||||.+|
T Consensus 27 k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 27 KKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3345666666 45665554
No 115
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=28.42 E-value=6e+02 Score=27.53 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhh
Q 004861 614 MKKLSEMENALCKASGQVERANS 636 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerAns 636 (726)
.|.+.-++..+.++..+++.|..
T Consensus 184 ~k~~eK~~~k~~k~~~~~~~a~~ 206 (486)
T 3haj_A 184 PEQLKKLQDKIEKCKQDVLKTKE 206 (486)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555543
No 116
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=27.92 E-value=8e+02 Score=29.68 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=31.4
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH-HHhhhhHHHHHHHHHhHHH
Q 004861 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAA-RRLSKDKAELKTLRQEKEE 598 (726)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvmQaa-rRL~kdk~ELksLR~EkEE 598 (726)
+.+|+.+-+.+..++ .+....+...|-+.|..... ++...+...++.+-+.+..
T Consensus 756 ~~R~~~l~~~~~~iQ-Y~~~a~~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~ 810 (1010)
T 1g8x_A 756 EAREQRLGSEQTKSD-YLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKE 810 (1010)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 345555555555444 44455666778777665443 3455667777777655433
No 117
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=27.19 E-value=2.3e+02 Score=29.17 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh-------------------hhhhhhhHHHHHhhhHHHHHHHHHHHHh
Q 004861 598 EVERLKKEKQILEENTMKKLSEMENALCKASGQ-------------------VERANSAVRRLEVENTALRQEMEAAKLR 658 (726)
Q Consensus 598 E~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Q-------------------lerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (726)
|-+.+++.|+-||+.=|+|.+++-....-|-.| .+|=...|.-||.|.+.-|+++++.=+.
T Consensus 14 EH~~f~~Ak~rLe~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~q 93 (239)
T 3k66_A 14 EHDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEE 93 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345678888888988888887765544444333 3344456777999999999998877655
Q ss_pred HHHh
Q 004861 659 AAES 662 (726)
Q Consensus 659 A~ES 662 (726)
-++.
T Consensus 94 RV~a 97 (239)
T 3k66_A 94 RVQA 97 (239)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 118
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.02 E-value=85 Score=25.82 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=28.6
Q ss_pred HHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhh
Q 004861 211 LAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACA 246 (726)
Q Consensus 211 L~GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~a 246 (726)
+..||--+++.||+++....+|=|.... ++.+-+.
T Consensus 13 ~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~Tie 47 (58)
T 2ejs_A 13 LNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTD 47 (58)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHH
Confidence 5667888999999999999999998876 6655543
No 119
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=26.87 E-value=1.5e+02 Score=29.05 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004861 691 QEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 691 QEELa~eK~Kl~~l~qel~qa 711 (726)
+.|+..-+..+.+.+.+++++
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a 117 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAA 117 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333433334444444444333
No 120
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=26.86 E-value=1.4e+02 Score=26.31 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=32.2
Q ss_pred HHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004861 679 KFQSWEKQKALFQEELV-------------TEKRKVVQLLQELDQAKALQEQLEVF 721 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa-------------~eK~Kl~~l~qel~qak~~q~q~E~~ 721 (726)
-|.+.|.|-..|+.+|. .-|..|.++++.|++|.++.+|||--
T Consensus 16 lFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE 71 (102)
T 2qyw_A 16 HFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEE 71 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777766662 23567889999999999999997743
No 121
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=26.82 E-value=7.5e+02 Score=28.14 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHh
Q 004861 567 WTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEV 643 (726)
Q Consensus 567 wtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~ 643 (726)
..||--.+=..+|+| |+...|+|.++++..-.++|..-..|.+=+-+.-.||.-|..+|-+|-+.+-.++.
T Consensus 307 ~qew~~~hp~~~Aer------~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~ 377 (551)
T 2b5u_A 307 QQEWDATHPVEAAER------NYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNR 377 (551)
T ss_dssp HHHHHHHCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhhhcCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhh
Confidence 345554555556655 58888999999988877777755667777777777777777777666666665553
No 122
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.75 E-value=3.1e+02 Score=23.74 Aligned_cols=25 Identities=48% Similarity=0.706 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhhhhhh
Q 004861 584 KDKAELKTLRQEKEEVERLKKEKQILEE 611 (726)
Q Consensus 584 kdk~ELksLR~EkEE~erlkKeKq~lEe 611 (726)
--.+||.+||+=.+| |+++++-|++
T Consensus 22 q~qaEl~sLrrT~~E---L~~G~~KL~~ 46 (78)
T 3iv1_A 22 RAQAELNALKRTEED---LKKGHQKLEE 46 (78)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH---HHhhhHHHHH
Confidence 335899999887665 5667776654
No 123
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.69 E-value=2.6e+02 Score=24.17 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH
Q 004861 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (726)
Q Consensus 616 rLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmE 653 (726)
.+.+.+..+.....++...+..+..|+.+...++.++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555566655555555554
No 124
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=26.69 E-value=1.8e+02 Score=29.42 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh------------hhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhH
Q 004861 598 EVERLKKEKQILEENTMKKLSEMENALCKASGQ------------VERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (726)
Q Consensus 598 E~erlkKeKq~lEe~T~KrLsEmEnAL~kas~Q------------lerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (726)
|-+++++-|+.||+.=|+|.+++-....-|-.| .+|=...|.-||.|++.-|+++++.=+.-++..
T Consensus 19 EH~~f~~Ak~~Le~~hr~k~~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v~aLE~E~~~ErqqL~etH~qRV~a~ 96 (211)
T 3umh_A 19 EHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAM 96 (211)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 345688888888988888888876666555544 344456788899999999999888766555443
No 125
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=26.65 E-value=4.9e+02 Score=25.91 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=25.8
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 004861 672 REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL-QELDQAKALQEQLE 719 (726)
Q Consensus 672 rekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~-qel~qak~~q~q~E 719 (726)
.|...++||..- |-.-|.||.++| +=|+.|++.+++++
T Consensus 172 ~E~~L~~KF~~l----------LNeKK~KIR~lq~~Ll~~~~~~~~~~~ 210 (213)
T 1ik9_A 172 LETDLYKRFILV----------LNEKKTKIRSLHNKLLNAAQEREKDIK 210 (213)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344555555543 345689999999 55666888887765
No 126
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=26.22 E-value=91 Score=25.75 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=30.0
Q ss_pred HHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhh
Q 004861 210 ILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACA 246 (726)
Q Consensus 210 SL~GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~a 246 (726)
-|..||--+++.||.++....+|=|... .++.+.++
T Consensus 16 ql~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~Tie 51 (58)
T 4g3o_A 16 QLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTD 51 (58)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHH
Confidence 5788999999999999999999999876 56655443
No 127
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=25.87 E-value=1.6e+02 Score=31.83 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=25.0
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHH
Q 004861 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKT 591 (726)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELks 591 (726)
+-.|..|..+|+.+|.+=.=|.+++- +++|+++..+|+.
T Consensus 5 l~~~~~r~~el~~~~~~p~~~~d~~~---~~~~~ke~~~l~~ 43 (354)
T 3d5a_X 5 LDRLEEEYRELEALLSDPEVLKDKGR---YQSLSRRYAEMGE 43 (354)
T ss_dssp HHHHTHHHHHHHHHTTSTTTTSCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhhCHHH---HHHHHHHHHHHHH
Confidence 34678899999999988776777433 2344444444443
No 128
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=25.49 E-value=4.1e+02 Score=24.61 Aligned_cols=166 Identities=13% Similarity=0.206 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-HhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh------
Q 004861 555 PRVRELHNQLHEWTEWANQKVMQAAR-RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA------ 627 (726)
Q Consensus 555 ~rv~eLq~qlqewtdWAnqKvmQaar-RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka------ 627 (726)
.|.+..+..+.+-.+|-.++--+.+. -+++|++..+.|-++++..+ ++-...++ .+..+..+=..|-..
T Consensus 3 ~~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le---~~i~~~~~-~v~~l~~~~~~L~~~~~~~~~ 78 (216)
T 1u5p_A 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLE---ADISAHED-RLKDLNSQADSLMTSSAFDTS 78 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHTCSSSCTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHhcCCCChH
Confidence 35677788888888898877655543 37888888888877776543 22222211 122222222222111
Q ss_pred --hhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHH----HHHH--------hHHHHHhHHHHHHHHHHH
Q 004861 628 --SGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSK----REKK--------TQMKFQSWEKQKALFQEE 693 (726)
Q Consensus 628 --s~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~k----rekk--------~lkk~qsWEkQK~lLQEE 693 (726)
...++.-+..-..|..--..-|..+|++.. .-+-...|.++.. ++.- ++.-.+.--++-..|+.|
T Consensus 79 ~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-l~qf~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~kh~~~~~e 157 (216)
T 1u5p_A 79 QVKDKRETINGRFQRIKSMAAARRAKLNESHR-LHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAE 157 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHH
Confidence 111222233333343333444444444422 2222222322221 1110 122334444455567788
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhcC
Q 004861 694 LVTEKRKVVQLLQELD-----------QAKALQEQLEVFFFSF 725 (726)
Q Consensus 694 La~eK~Kl~~l~qel~-----------qak~~q~q~E~~w~q~ 725 (726)
|......|..|...-. .++....++..+|..+
T Consensus 158 l~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L 200 (216)
T 1u5p_A 158 LAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKEL 200 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888877777765433 3555556667788654
No 129
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.03 E-value=1.6e+02 Score=25.63 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=31.8
Q ss_pred HHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004861 680 FQSWEKQKALFQEELV------------TEKRKVVQLLQELDQAKALQEQLEVFF 722 (726)
Q Consensus 680 ~qsWEkQK~lLQEELa------------~eK~Kl~~l~qel~qak~~q~q~E~~w 722 (726)
|.+.|.|-..+.++|. .-|..|.++++.|..|.++..|||---
T Consensus 3 F~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~ 57 (97)
T 3onj_A 3 LISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEV 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665 345678899999999999999998543
No 130
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.84 E-value=3.2e+02 Score=23.99 Aligned_cols=50 Identities=16% Similarity=0.340 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 667 ~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
..++.+-++.|.... .+...|+++|..-+..|+.+.+++...+++..+++
T Consensus 31 k~lAE~RR~AL~eaL---~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 31 KEVAEKRRKALYEAL---KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666554 46667888888888888888888888888777654
No 131
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.82 E-value=1.5e+02 Score=25.75 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=14.2
Q ss_pred hhhhhhhhHHHHHhhhHHHHHHHHHHH
Q 004861 630 QVERANSAVRRLEVENTALRQEMEAAK 656 (726)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaK 656 (726)
|.+.+-..++.+|.+|..|+......+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le 33 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAME 33 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344555556666666666666555544
No 132
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.81 E-value=2e+02 Score=27.95 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=16.3
Q ss_pred hhHHHHHhhhHHHHHHHHHHHH
Q 004861 636 SAVRRLEVENTALRQEMEAAKL 657 (726)
Q Consensus 636 s~vrrLE~EnA~lR~EmEAaKL 657 (726)
+.|+.|..|+++||.+|+...+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888776543
No 133
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.62 E-value=1.6e+02 Score=25.08 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhhhhh
Q 004861 617 LSEMENALCKASGQVER 633 (726)
Q Consensus 617 LsEmEnAL~kas~Qler 633 (726)
|+++|.+|..+...+++
T Consensus 14 i~~lE~eL~~~r~e~~~ 30 (74)
T 2xv5_A 14 LAEKEREMAEMRARMQQ 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 134
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.32 E-value=2.8e+02 Score=30.50 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 682 SWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (726)
Q Consensus 682 sWEkQK~lLQEELa~eK~Kl~~l~qel~q 710 (726)
.-+.|-..||+-+..-.+||.+|.+.+.+
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~L~~~v~~ 130 (411)
T 3ghg_C 102 THDSSIRYLQEIYNSNNQKIVNLKEKVAQ 130 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777766666555555543
No 135
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=23.76 E-value=4.7e+02 Score=24.76 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHH-HHHHhHHHhHHHHHHHHHHHHHhHHHHHh
Q 004861 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME-AAKLRAAESAASCQEVSKREKKTQMKFQS 682 (726)
Q Consensus 615 KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmE-AaKL~A~ES~~sc~ev~krekk~lkk~qs 682 (726)
.+|-+..+.|+++..+||| .+++||.+-..+..++. |+|-...+++.-...-+-|.++...+|..
T Consensus 10 e~lr~~~~~L~~~~r~Ldr---~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~ 75 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDR---QIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYA 75 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788889999999999 55566655555555543 33333334444444444444444444443
No 136
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=23.55 E-value=1.2e+02 Score=21.55 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=26.8
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004861 213 ELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (726)
Q Consensus 213 GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~am 247 (726)
..|.-|... .++..+|...|..++.|+..|+..
T Consensus 6 ~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~ 38 (40)
T 1z96_A 6 SKIAQLVSM--GFDPLEAAQALDAANGDLDVAASF 38 (40)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 345666665 789999999999999999998763
No 137
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=23.46 E-value=3.3e+02 Score=29.45 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=24.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q 004861 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELK 590 (726)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvmQaarRL~kdk~ELk 590 (726)
.+..|+.||+.+|.+=.=|.+++- +++|++++++|+
T Consensus 29 ~~~~r~~el~~~~~~p~~w~d~~~---~~~~~ke~~~l~ 64 (365)
T 1gqe_A 29 AKKERLEEVNAELEQPDVWNEPER---AQALGKERSSLE 64 (365)
T ss_dssp HHHHHHHHHHHHHHSGGGGGSHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccCHHH---HHHHHHHHHHHH
Confidence 457889999999988777877653 344555544444
No 138
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.22 E-value=1.7e+02 Score=32.65 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhh
Q 004861 614 MKKLSEMENALCKASGQVERA 634 (726)
Q Consensus 614 ~KrLsEmEnAL~kas~QlerA 634 (726)
..++.+++...+++..++|..
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l 52 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEH 52 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555655555555544433
No 139
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.95 E-value=4e+02 Score=23.63 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=44.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 004861 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKAL------FQEELVTEKRKVVQLLQELDQA 711 (726)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQK~l------LQEELa~eK~Kl~~l~qel~qa 711 (726)
.++|..++.+|.+|++-+.- .+..|+|++.-=.+.-. ++.+|..-..||..|+.++.+.
T Consensus 17 kkkL~~Ki~el~~ei~ke~~---------------~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~ 81 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVD---------------QREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKY 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666554322 24444555444322221 3888999999999999999999
Q ss_pred HHHHHHHHhh
Q 004861 712 KALQEQLEVF 721 (726)
Q Consensus 712 k~~q~q~E~~ 721 (726)
...=.++|.+
T Consensus 82 q~~L~e~e~~ 91 (98)
T 2ke4_A 82 EAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 8888888865
No 140
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=22.64 E-value=5.6e+02 Score=25.18 Aligned_cols=44 Identities=16% Similarity=0.376 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HhhhhHHHHHHHHHhHHHHH
Q 004861 557 VRELHNQLHEWTEWANQKVMQAAR-RLSKDKAELKTLRQEKEEVE 600 (726)
Q Consensus 557 v~eLq~qlqewtdWAnqKvmQaar-RL~kdk~ELksLR~EkEE~e 600 (726)
+..+..++.+-.+|-.++-..+.. -++.|...+..|.+..+..+
T Consensus 112 l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~d~~~v~~l~~~~~~f~ 156 (326)
T 3kbt_A 112 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFA 156 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHHHH
Confidence 345556666777777765443322 24667777777766665543
No 141
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.58 E-value=1e+02 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhcCCchHHHHHHHhhcc
Q 004861 140 IFKSAIKKIVACGYMEEVATKAVLRSG 166 (726)
Q Consensus 140 fY~~ALarLP~~g~re~~~~rALL~AG 166 (726)
.|.+.|.+|..+||.+..+.+||..++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~ 33 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASY 33 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 477899999999999998888887644
No 142
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.47 E-value=98 Score=25.73 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=27.9
Q ss_pred HHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhh
Q 004861 211 LAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACA 246 (726)
Q Consensus 211 L~GLVafLr~~fP~LS~~DAmwyLLlaDaDLl~A~a 246 (726)
|..||--+++.||+++....+|=|.... ++.+.+.
T Consensus 13 l~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~Tie 47 (61)
T 2ekf_A 13 LATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTIT 47 (61)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHH
Confidence 3456777999999999999999998765 6666555
No 143
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.58 E-value=2.3e+02 Score=30.08 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=25.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 679 k~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
.+..=+.+...||+.|...+.||.+|++.+.+.+.
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777888888888888888877766543
No 144
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.27 E-value=2.9e+02 Score=25.26 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHHHHhHHHH
Q 004861 607 QILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (726)
Q Consensus 607 q~lEe~T~KrLsEmEnAL~kas~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk~qsWEkQ 686 (726)
|-+.--||--|.|+|.+|..--+||.-|. ++|+..+..--.-=+--..++.++=.
T Consensus 27 ~~~~~~tM~~ieeLQ~Ei~~~E~QL~iAr---QKLkdAe~~~E~DPDevNK~tl~~R~---------------------- 81 (107)
T 2k48_A 27 QGIDPFTMSTLQELQENITAHEQQLVTAR---QKLKDAEKAVEVDPDDVNKSTLQNRR---------------------- 81 (107)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHH----------------------
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCcHHHHHHHHHHH----------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 687 KALFQEELVTEKRKVVQLLQELDQAKALQE 716 (726)
Q Consensus 687 K~lLQEELa~eK~Kl~~l~qel~qak~~q~ 716 (726)
.+..+-+.||++|++.|+-+-..++
T Consensus 82 -----~~Vsalq~KiaeLKrqLAd~va~gk 106 (107)
T 2k48_A 82 -----AAVSTLETKLGELKRQLADLVAAQK 106 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhcc
No 145
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.01 E-value=1.6e+02 Score=31.63 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhhHHH
Q 004861 619 EMENALCKASGQVERANSAVRRLEVENTAL 648 (726)
Q Consensus 619 EmEnAL~kas~QlerAns~vrrLE~EnA~l 648 (726)
+++..+.....++...+..-|+|-.+..++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 28 DTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333334444444444444444444444433
No 146
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.00 E-value=3.5e+02 Score=23.75 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=35.3
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 667 ~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
.+++.+-++.|.... .+..+|+++|..-+..|..|.++..+.+.+..+++
T Consensus 23 k~lAE~Rr~AL~eaL---~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 23 KEVAEQRRKALYEAL---KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666554 34556788888888888888888888777776654
No 147
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=20.99 E-value=76 Score=27.94 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 688 ALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~~l~qel~qak~~q~q~E 719 (726)
+-|+|||.+-..=|-.|.+||++|.+.-+..|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpae 56 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAE 56 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 45788888877777888888887776544433
No 148
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=20.92 E-value=1.8e+02 Score=21.44 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 682 SWEKQKALFQEELVTEKRKVVQLLQELD 709 (726)
Q Consensus 682 sWEkQK~lLQEELa~eK~Kl~~l~qel~ 709 (726)
.-|-+.+-+.|||++-|.||+.+.+-++
T Consensus 6 aieyeqaaikeeiaaikdkiaaikeyia 33 (36)
T 1bb1_A 6 AIEYEQAAIKEEIAAIKDKIAAIKEYIA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999999999998876554
No 149
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.71 E-value=1.7e+02 Score=21.22 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 688 ALFQEELVTEKRKVVQLLQELDQAK 712 (726)
Q Consensus 688 ~lLQEELa~eK~Kl~~l~qel~qak 712 (726)
+-|..||++-|..|+.|.=|++..|
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655555444
No 150
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.59 E-value=6.1e+02 Score=24.86 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHh
Q 004861 565 HEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEK 606 (726)
Q Consensus 565 qewtdWAnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeK 606 (726)
+.+.|=|-+=|-++-+-|-+++.+|.-+--|++.+-+-++.|
T Consensus 15 ~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k 56 (169)
T 3k29_A 15 KDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQK 56 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999887776655
No 151
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=20.31 E-value=1.7e+02 Score=32.97 Aligned_cols=37 Identities=35% Similarity=0.491 Sum_probs=23.2
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 004861 588 ELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (726)
Q Consensus 588 ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (726)
.||.||+|-|-.-|-+.|||.-.+ .+|+.+++-.|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 39 (536)
T 3err_A 3 DLKRLRQEPEVFHRAIREKGVALD--LEALLAVDEQLHK 39 (536)
T ss_dssp CHHHHHSCHHHHHHHHHHHTCCCC--HHHHHHHHHHHHH
T ss_pred chHhhhcChHHHHHHHHHhhHHHH--HHHHHHHHHHHHH
Confidence 377888888877777777774333 4455555544443
No 152
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.25 E-value=3.3e+02 Score=24.08 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004861 661 ESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (726)
Q Consensus 661 ES~~sc~ev~krekk~lkk~qsWEkQK~lLQEELa~eK~Kl~~l~qel~qak~ 713 (726)
-.|.+|.. |-+.....-|.++.-|+-|+..-+..+.++.+|+...++
T Consensus 37 gyAq~CR~------Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 37 GYAQSCRY------KRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778853 222333555666666666666666666666666655443
No 153
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=20.25 E-value=7.4e+02 Score=25.70 Aligned_cols=138 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHH-H--HHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHhhhhhhh--hhhhHHHHH
Q 004861 547 DEIILKLIPRVRELHNQLHEWTE-W--ANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEEN--TMKKLSEME 621 (726)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtd-W--AnqKvmQaarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~--T~KrLsEmE 621 (726)
..|+=.|..+..++++.=|+|+| | +.+||..|..-|-|=+.-..++-.|-|.+ |.+-..-|+. +..-.-.+|
T Consensus 97 ~~~~~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~eka---k~~~~~~e~~q~~~~~~K~le 173 (279)
T 3qwe_A 97 RDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRAR---SQGSPEDSAPQASPGPSKQQE 173 (279)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CCCC-------------HHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccccccccccccchhh
Q ss_pred HHHHH---hhhhhhhhhhhHHHHHhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHhHHH-----HHhHHHHHHHH
Q 004861 622 NALCK---ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMK-----FQSWEKQKALF 690 (726)
Q Consensus 622 nAL~k---as~QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~ev~krekk~lkk-----~qsWEkQK~lL 690 (726)
.+-+. |-.-++-|+...+..-.+--..|.|+|..| .+.+...+++...---+||. ||....|-+-|
T Consensus 174 k~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk---~~~v~~Lr~LI~e~D~~lk~~t~~~fq~~~~~~~~~ 247 (279)
T 3qwe_A 174 RRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAK---QRIVSHVRKLVFQGDEVLRRVTLSLFGLRGAQAERG 247 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Done!