BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004862
(726 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/615 (37%), Positives = 352/615 (57%), Gaps = 39/615 (6%)
Query: 39 FKEFIRNFERDKNVFPYRESLIE----NPKFLLVHLEDLLAFDADLPSLLRSSPADFLPL 94
F EF+ F+ + N Y E + E K L++ D+L+F+ +L + ++ LP+
Sbjct: 8 FIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPI 67
Query: 95 FETAAAEVLASLKMKVDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAA 154
E A + + L + E+V + + + +R I + I KL+ I GI +
Sbjct: 68 LEGALYDHILQLDPTYQRD---IEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKV 124
Query: 155 SRVKA---KATYVHLSCKNCKSTLDVPCRPGLGGAI-VPRSCGHIPQAGEEPCPIDPWII 210
+ VK KATY H+ +C + P + + +P C + G+ + +
Sbjct: 125 TPVKERIYKATYKHIH-PDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQ-------FRL 176
Query: 211 VPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQS 270
+P+K++ +D Q +QE PE+VP+G+LPR + + ++ LV + PG R+ + GI I Q
Sbjct: 177 IPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQ- 235
Query: 271 ANSPASHKGAVAVRQPYIRVVGLEETNEASSRGAAAFTQEEIEKFKKFASQPDAYKTVCS 330
+SP +G+ AV Y++V +E + + ++E+ +K K A P + S
Sbjct: 236 -DSPVK-RGSRAVFDIYMKVSSIEVSQKVLDE--VIISEEDEKKIKDLAKDPWIRDRIIS 291
Query: 331 KIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKT 390
IAPSI+GH ++K+A++ LFGG K L D ++RGD+++L++GDP TAKSQ L+F+ +
Sbjct: 292 SIAPSIYGHWELKEALALALFGGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRV 350
Query: 391 APIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVA 450
AP AVYT+GKGS+AAGLTA+V+R+ + E+YLE GA+VLADGG+ IDE DKMR EDRVA
Sbjct: 351 APRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVA 410
Query: 451 IHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510
IHEAMEQQT+SIAKAGI LN+R +V+AA NP GRY + DNI+L TILSRFDL
Sbjct: 411 IHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDL 470
Query: 511 IFIVKDIRMYNQDKLXXXXXXXXXXXXXXXXXXXXXXXEENWLKRYIQYCRLECHPRLSE 570
IFI+KD + QD+ + + L++YI Y R P+++
Sbjct: 471 IFILKD-QPGEQDR-----ELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITS 524
Query: 571 SASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENE 630
A + D +V+ MR++++ET + +PI IT RQLEA++R+SEA AKM L T +
Sbjct: 525 EAKNLITDFFVE----MRKKSSETPD-SPILITPRQLEALIRISEAYAKMALKAEVTRED 579
Query: 631 VNEAV---RLFTVST 642
A+ RLF S
Sbjct: 580 AERAINIMRLFLESV 594
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 150/330 (45%), Gaps = 42/330 (12%)
Query: 311 EIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNV 370
E+E+F++ A + D T IAP + G ++V K ++ LF KN ++V
Sbjct: 192 ELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGKN-------SERLHV 242
Query: 371 LLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLA 430
LL G P ++ AP VY + + LTA + D R + L GA VLA
Sbjct: 243 LLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED---RGWALRAGAAVLA 299
Query: 431 DGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDD 490
DGG++ +D + R A+ EAM++ T+++ GI LN+R +VLAA NP D
Sbjct: 300 DGGILAVDHLEGAPEPHRWALMEAMDKGTVTV--DGIA--LNARCAVLAAINPGEQWPSD 355
Query: 491 LKSAQDNIDLQTTILSRFDLI-FIVKDIRMYNQDKLXXXXXXXXXXXXXXXXXXXXXXXE 549
A+ IDL LS FDLI F+ D R ++
Sbjct: 356 PPIAR--IDLDQDFLSHFDLIAFLGVDPRPGEPEE------------------QDTEVPS 395
Query: 550 ENWLKRYIQYC-RLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAP-IPITVRQL 607
L+RY+ Y R P L+E A +L Y R+ G P +P+T RQL
Sbjct: 396 YTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRRE---EVEERLGMGLPTLPVTRRQL 452
Query: 608 EAIVRLSEALAKMKLSHVATENEVNEAVRL 637
E++ RL++A A+M+LS +V+ A L
Sbjct: 453 ESVERLAKAHARMRLSDDVEPEDVDIAAEL 482
>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|B Chain B, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|C Chain C, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
Length = 268
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 130/264 (49%), Gaps = 22/264 (8%)
Query: 39 FKEFIRNFERDKNVFPYRESLIE----NPKFLLVHLEDLLAFDADLPSLLRSSPADFLPL 94
F EF+ F+ + N Y E + E K L++ D+L+F+ +L + ++ LP+
Sbjct: 14 FIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPI 73
Query: 95 FETAAAEVLASLKMKVDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAA 154
E A + + L + E+V + + + +R I + I KL+ I GI +
Sbjct: 74 LEGALYDHILQLDPTYQRD---IEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKV 130
Query: 155 SRVKA---KATYVHLSCKNCKSTLDVPCRPGLGGAI-VPRSCGHIPQAGEEPCPIDPWII 210
+ VK KATY H+ +C + P + + +P C + G+ + +
Sbjct: 131 TPVKERIYKATYKHIH-PDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQ-------FRL 182
Query: 211 VPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQS 270
+P+K++ +D Q +QE PE+VP+G+LPR + + ++ LV + PG R+ + GI I Q
Sbjct: 183 IPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQ- 241
Query: 271 ANSPASHKGAVAVRQPYIRVVGLE 294
+SP +G+ AV Y++V +E
Sbjct: 242 -DSPVK-RGSRAVFDIYMKVSSIE 263
>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|B Chain B, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|C Chain C, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|D Chain D, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|E Chain E, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|F Chain F, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
Length = 279
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 30/297 (10%)
Query: 32 RHTTLIKFKEFIRNFERDKNVFPYRESLIENPKFLLVHLEDLLAFDADLPSLLRSSPADF 91
+ TL KF+EF + VF E N + + V DL FD DL LL P D
Sbjct: 11 KSKTLTKFEEFFSLQDYKDRVFEAIEKY-PNVRSIEVDYLDLEMFDPDLADLLIEKPDDV 69
Query: 92 LPLFETAAAEVLASLKMKVDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGIT 151
+ + A + L+ VD + I + + + +R + ++FI K V + GI
Sbjct: 70 IRAAQQAIRNI-DRLRKNVD--------LNIRFSGISNVIPLRELRSKFIGKFVAVDGIV 120
Query: 152 IAASRVKAKATYVHLSCKNCKSTLDVPCRPGLGGAIVPRSCGHIPQAGEEPCPIDPWIIV 211
++ + C+ C V + P C C + ++
Sbjct: 121 RKTDEIRPRIVKAVFECRGCMRHHAVTQSTNM--ITEPSLCSE--------CGGRSFRLL 170
Query: 212 PDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQSA 271
D+S+++D QTLKLQE E++ GE PR + + ++ LV T+ PG + + G +
Sbjct: 171 QDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDE 230
Query: 272 NSPASHKGAVAVRQPYIRVVGLEETNEASSRGAAAFTQEEIEKFKKFASQPDAYKTV 328
+ + G ++E+ EK K+ A P+ Y+ +
Sbjct: 231 RTKRFKNF----------IYGNYTEFLEQEFEELQISEEDEEKIKELAGDPNIYEKI 277
>pdb|4IJB|A Chain A, Crystal Structure Of Engineered Protein, Northeast
Structural Genomics Consortium Target Or288
Length = 256
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 602 ITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMA 661
+T R+LE+++ + + L + EN+++ A+R + A GI Q N T E+
Sbjct: 137 LTERELESLLEYARSYGXEPLIEINDENDLDIALR------IGARFIGIWSQDNETLEIN 190
Query: 662 HEIKQAETQIKRRIP------IGNQISERRLIDDLTRMGMNESIIRRAL 704
K+ + ++ IP G ISER I++L ++G+N +I +L
Sbjct: 191 ---KENQRKLISXIPSNVVKVAGGGISERNEIEELRKLGVNAFLIGESL 236
>pdb|2ENX|A Chain A, Structure Of The Family Ii Inorganic Pyrophosphatase From
Streptococcus Agalactiae At 2.8 Resolution
pdb|2ENX|B Chain B, Structure Of The Family Ii Inorganic Pyrophosphatase From
Streptococcus Agalactiae At 2.8 Resolution
Length = 310
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 361 GVKLRGDV-NVLLLGDPSTAKSQF--LKFVEKTAPIAVYTSG-----KGSSAAGLTASVI 412
G+ L G + + LLL P+T S K + + A + + G G++ + TA+ +
Sbjct: 141 GLLLSGLISDTLLLKSPTTHASDIPVAKELAELAGVNLEEYGLEMLKAGTNLSSKTAAEL 200
Query: 413 RDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472
D ++ F L G A+ +A V I++ + E VAI EA+ + S IT ++N
Sbjct: 201 IDIDAKTFELNGEAVRVAQVNTVDINDILARQEEIEVAIQEAIVTEGYSDFVLMITDIVN 260
Query: 473 SRTSVLA 479
S + +LA
Sbjct: 261 SNSEILA 267
>pdb|1I74|A Chain A, Streptococcus Mutans Inorganic Pyrophosphatase
pdb|1I74|B Chain B, Streptococcus Mutans Inorganic Pyrophosphatase
Length = 309
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 361 GVKLRGDV-NVLLLGDPSTAKSQ--FLKFVEKTAPIAVYTSG-----KGSSAAGLTASVI 412
GV L G + + LLL P+T S + + K A + + G G++ A TA+ +
Sbjct: 140 GVXLSGLISDTLLLKSPTTHASDPAVAEDLAKIAGVDLQEYGLAXLKAGTNLASKTAAQL 199
Query: 413 RDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472
D ++ F L G + +A V I+E + + E AI + S IT +LN
Sbjct: 200 VDIDAKTFELNGSQVRVAQVNTVDINEVLERQNEIEEAIKASQAANGYSDFVLXITDILN 259
Query: 473 SRTSVLAAAN 482
S + +LA N
Sbjct: 260 SNSEILALGN 269
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 371 LLLGDPSTAKSQFLK-FVEK--TAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAM 427
+LL K +FL+ EK A A+ G GS AA L IR G + L G M
Sbjct: 97 VLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGD--HYVLNGTKM 154
Query: 428 VLADGG-VVCIDEFDKMRPEDR 448
+++GG + F + PE R
Sbjct: 155 WISNGGEAEWVVVFATVNPELR 176
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 19/122 (15%)
Query: 372 LLGDPSTAKSQFL---------KFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYL 422
++ DP A + ++ K +EK P AV + G +A + R G EF
Sbjct: 54 IMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEF-- 111
Query: 423 EGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAAN 482
G M+ A D DK EDR AM++ + A++GI + +V A
Sbjct: 112 -GVTMIGATA-----DAIDK--AEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVG 163
Query: 483 PP 484
P
Sbjct: 164 FP 165
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 19/122 (15%)
Query: 372 LLGDPSTAKSQFL---------KFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYL 422
++ DP A + ++ K +EK P AV + G +A + R G EF
Sbjct: 54 IMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEF-- 111
Query: 423 EGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAAN 482
G M+ A D DK EDR AM++ + A++GI + +V A
Sbjct: 112 -GVTMIGATA-----DAIDK--AEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVG 163
Query: 483 PP 484
P
Sbjct: 164 FP 165
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 19/122 (15%)
Query: 372 LLGDPSTAKSQFL---------KFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYL 422
++ DP A + ++ K +EK P AV + G +A + R G EF
Sbjct: 54 IMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEF-- 111
Query: 423 EGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAAN 482
G M+ A D DK EDR AM++ + A++GI + +V A
Sbjct: 112 -GVTMIGATA-----DAIDK--AEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVG 163
Query: 483 PP 484
P
Sbjct: 164 FP 165
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 370 VLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSS----AAGLTASVIRD 414
VLL+G P T K+ K V A + ++ G GSS GL AS +RD
Sbjct: 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMG-GSSFIEMFVGLGASRVRD 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,737,505
Number of Sequences: 62578
Number of extensions: 731308
Number of successful extensions: 1844
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1814
Number of HSP's gapped (non-prelim): 29
length of query: 726
length of database: 14,973,337
effective HSP length: 106
effective length of query: 620
effective length of database: 8,340,069
effective search space: 5170842780
effective search space used: 5170842780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)