Query 004862
Match_columns 726
No_of_seqs 366 out of 3696
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0481 DNA replication licens 100.0 9E-135 2E-139 1051.6 61.1 717 2-726 1-729 (729)
2 COG1241 MCM2 Predicted ATPase 100.0 8E-117 2E-121 985.6 65.9 659 35-722 3-680 (682)
3 KOG0480 DNA replication licens 100.0 5E-117 1E-121 943.7 48.1 601 29-646 19-651 (764)
4 PTZ00111 DNA replication licen 100.0 1E-112 2E-117 970.7 68.7 681 30-721 83-909 (915)
5 KOG0482 DNA replication licens 100.0 7E-113 1E-117 887.3 40.0 666 31-723 9-719 (721)
6 KOG0478 DNA replication licens 100.0 6E-111 1E-115 903.2 42.9 655 28-718 126-799 (804)
7 KOG0477 DNA replication licens 100.0 4E-105 8E-110 846.5 33.3 669 30-725 156-853 (854)
8 KOG0479 DNA replication licens 100.0 6E-103 1E-107 824.2 49.1 587 34-643 12-647 (818)
9 smart00350 MCM minichromosome 100.0 4.7E-91 1E-95 784.5 54.8 500 130-642 2-508 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 3.8E-68 8.2E-73 567.0 10.2 326 311-642 1-330 (331)
11 COG3829 RocR Transcriptional r 100.0 1.1E-28 2.3E-33 265.2 21.4 294 332-707 243-557 (560)
12 TIGR00368 Mg chelatase-related 100.0 4.9E-28 1.1E-32 269.2 21.9 264 334-637 192-498 (499)
13 COG0606 Predicted ATPase with 100.0 3.1E-28 6.6E-33 258.6 16.1 264 334-638 179-485 (490)
14 COG3604 FhlA Transcriptional r 100.0 1.4E-27 3.1E-32 252.8 19.1 273 366-707 245-543 (550)
15 PRK09862 putative ATP-dependen 100.0 3.5E-27 7.5E-32 260.8 20.5 265 334-638 191-492 (506)
16 COG2204 AtoC Response regulato 99.9 3.3E-27 7.2E-32 255.1 17.7 299 331-707 138-454 (464)
17 COG2255 RuvB Holliday junction 99.9 2.5E-25 5.5E-30 220.2 23.2 285 335-725 27-320 (332)
18 TIGR02442 Cob-chelat-sub cobal 99.9 5.3E-25 1.2E-29 254.3 24.3 268 333-643 3-309 (633)
19 PF01078 Mg_chelatase: Magnesi 99.9 4.6E-26 1E-30 221.4 11.4 172 333-518 2-203 (206)
20 TIGR02030 BchI-ChlI magnesium 99.9 2.4E-24 5.1E-29 228.6 21.9 269 333-643 3-314 (337)
21 PRK13407 bchI magnesium chelat 99.9 5.8E-24 1.3E-28 225.0 23.4 264 334-641 8-309 (334)
22 TIGR02031 BchD-ChlD magnesium 99.9 8.2E-24 1.8E-28 241.6 25.2 258 340-643 1-263 (589)
23 COG3283 TyrR Transcriptional r 99.9 1.1E-24 2.4E-29 220.6 15.0 268 368-707 228-505 (511)
24 CHL00081 chlI Mg-protoporyphyr 99.9 9.1E-24 2E-28 223.7 21.9 268 333-643 16-327 (350)
25 TIGR02974 phageshock_pspF psp 99.9 6.8E-22 1.5E-26 211.0 19.6 206 367-630 22-242 (329)
26 PRK13531 regulatory ATPase Rav 99.9 4.5E-21 9.7E-26 208.2 24.1 266 324-635 10-281 (498)
27 TIGR02329 propionate_PrpR prop 99.9 2.1E-21 4.5E-26 217.9 21.9 267 367-705 235-525 (526)
28 PRK15424 propionate catabolism 99.9 3.1E-21 6.8E-26 216.1 21.7 261 368-707 243-534 (538)
29 PRK11608 pspF phage shock prot 99.9 2.9E-21 6.3E-26 206.4 19.2 273 368-707 30-323 (326)
30 COG1239 ChlI Mg-chelatase subu 99.9 2.3E-20 5E-25 196.4 23.5 269 331-641 14-325 (423)
31 PRK11388 DNA-binding transcrip 99.9 4E-21 8.7E-26 224.5 19.9 269 367-707 348-628 (638)
32 COG3284 AcoR Transcriptional a 99.9 1.8E-21 3.9E-26 213.5 14.9 254 365-707 334-602 (606)
33 PRK05022 anaerobic nitric oxid 99.9 8.3E-21 1.8E-25 215.2 20.4 297 334-707 187-505 (509)
34 PRK10820 DNA-binding transcrip 99.9 1.2E-20 2.6E-25 213.8 20.9 206 368-632 228-448 (520)
35 COG1221 PspF Transcriptional r 99.9 1.2E-20 2.5E-25 201.0 19.0 229 325-621 69-312 (403)
36 TIGR01817 nifA Nif-specific re 99.9 2.7E-20 5.9E-25 212.9 21.7 207 367-633 219-440 (534)
37 PRK00080 ruvB Holliday junctio 99.9 3.3E-20 7.1E-25 199.4 20.6 288 333-726 24-320 (328)
38 PRK10923 glnG nitrogen regulat 99.8 7.8E-20 1.7E-24 206.7 19.9 274 367-707 161-466 (469)
39 PRK13406 bchD magnesium chelat 99.8 2.3E-19 5.1E-24 203.0 22.9 242 339-643 8-255 (584)
40 TIGR02915 PEP_resp_reg putativ 99.8 1.2E-19 2.6E-24 203.8 20.5 264 368-707 163-442 (445)
41 PRK15115 response regulator Gl 99.8 2E-19 4.4E-24 201.9 21.4 263 367-707 157-435 (444)
42 TIGR00635 ruvB Holliday juncti 99.8 5E-19 1.1E-23 188.7 23.0 290 334-726 4-299 (305)
43 PRK15429 formate hydrogenlyase 99.8 1.4E-19 3.1E-24 212.6 20.4 291 334-707 376-681 (686)
44 PRK11361 acetoacetate metaboli 99.8 3.7E-19 7.9E-24 200.7 21.8 270 368-707 167-454 (457)
45 PF05496 RuvB_N: Holliday junc 99.8 1.2E-19 2.7E-24 177.4 13.5 201 332-619 22-230 (233)
46 COG0714 MoxR-like ATPases [Gen 99.8 1.2E-18 2.7E-23 187.2 21.8 277 325-640 15-298 (329)
47 TIGR00764 lon_rel lon-related 99.8 1.2E-18 2.6E-23 199.5 22.5 171 422-639 208-392 (608)
48 TIGR01818 ntrC nitrogen regula 99.8 1.9E-18 4.1E-23 195.1 21.2 273 368-707 158-463 (463)
49 TIGR02902 spore_lonB ATP-depen 99.8 4.6E-18 9.9E-23 192.7 21.2 251 309-636 37-330 (531)
50 PRK10365 transcriptional regul 99.8 7.1E-18 1.5E-22 189.3 20.1 263 368-705 163-440 (441)
51 PF07726 AAA_3: ATPase family 99.7 9.7E-18 2.1E-22 149.8 10.4 126 369-509 1-130 (131)
52 TIGR01650 PD_CobS cobaltochela 99.7 9E-16 1.9E-20 160.3 23.0 221 368-638 65-294 (327)
53 TIGR02640 gas_vesic_GvpN gas v 99.7 3.3E-16 7.1E-21 162.6 18.7 210 368-635 22-254 (262)
54 PRK13765 ATP-dependent proteas 99.7 1.2E-15 2.6E-20 174.1 21.7 166 422-636 217-398 (637)
55 CHL00181 cbbX CbbX; Provisiona 99.7 8.3E-16 1.8E-20 161.0 14.3 225 324-618 13-254 (287)
56 PF14551 MCM_N: MCM N-terminal 99.7 7.2E-17 1.6E-21 147.5 5.1 112 35-149 1-121 (121)
57 TIGR02880 cbbX_cfxQ probable R 99.6 1.3E-15 2.9E-20 159.6 13.7 227 328-622 16-257 (284)
58 PF00158 Sigma54_activat: Sigm 99.6 1.9E-16 4.1E-21 152.5 4.6 130 367-510 22-164 (168)
59 PRK05342 clpX ATP-dependent pr 99.6 1.4E-14 3E-19 158.2 14.4 247 330-613 67-373 (412)
60 PF07728 AAA_5: AAA domain (dy 99.6 4.3E-15 9.3E-20 139.2 8.2 129 369-508 1-139 (139)
61 TIGR02881 spore_V_K stage V sp 99.6 8.1E-14 1.8E-18 144.9 17.3 219 335-619 7-239 (261)
62 COG2256 MGS1 ATPase related to 99.6 3.7E-14 7.9E-19 148.0 14.2 206 335-635 25-235 (436)
63 TIGR00382 clpX endopeptidase C 99.6 6.3E-14 1.4E-18 152.2 16.2 253 326-615 69-381 (413)
64 COG1222 RPT1 ATP-dependent 26S 99.5 1.8E-13 3.8E-18 140.7 17.8 190 369-639 187-393 (406)
65 TIGR02903 spore_lon_C ATP-depe 99.5 3.7E-13 8E-18 155.1 19.6 252 308-638 125-430 (615)
66 PHA02244 ATPase-like protein 99.5 3.1E-13 6.6E-18 142.6 17.1 137 368-514 120-258 (383)
67 KOG0734 AAA+-type ATPase conta 99.5 3.2E-13 6.9E-18 144.2 11.5 213 310-636 314-539 (752)
68 COG0466 Lon ATP-dependent Lon 99.4 9.5E-13 2.1E-17 146.2 13.2 243 329-635 318-581 (782)
69 PRK10787 DNA-binding ATP-depen 99.4 4.1E-12 8.8E-17 149.6 17.8 243 328-636 316-580 (784)
70 PRK11034 clpA ATP-dependent Cl 99.4 9.6E-12 2.1E-16 145.4 18.9 243 323-612 447-709 (758)
71 KOG2004 Mitochondrial ATP-depe 99.4 3.9E-12 8.4E-17 140.4 13.9 203 332-581 409-626 (906)
72 PRK14962 DNA polymerase III su 99.4 2.7E-11 5.8E-16 135.0 20.9 212 332-639 12-243 (472)
73 TIGR00763 lon ATP-dependent pr 99.4 5.2E-12 1.1E-16 150.2 16.2 175 326-528 312-502 (775)
74 PRK14956 DNA polymerase III su 99.4 3.5E-11 7.6E-16 132.0 20.8 216 328-638 12-246 (484)
75 PRK03992 proteasome-activating 99.4 5.3E-12 1.2E-16 138.4 13.7 194 368-641 166-375 (389)
76 TIGR03346 chaperone_ClpB ATP-d 99.3 1.6E-11 3.4E-16 147.4 18.2 243 325-615 556-822 (852)
77 PRK13342 recombination factor 99.3 2.2E-11 4.9E-16 134.9 17.5 202 335-637 13-218 (413)
78 TIGR02928 orc1/cdc6 family rep 99.3 2.3E-10 5E-15 125.3 24.4 300 334-716 15-350 (365)
79 COG4650 RtcR Sigma54-dependent 99.3 4.7E-11 1E-15 119.1 16.8 232 365-644 206-449 (531)
80 PLN03025 replication factor C 99.3 8.4E-11 1.8E-15 126.0 20.3 200 335-634 14-219 (319)
81 COG1223 Predicted ATPase (AAA+ 99.3 6.7E-12 1.4E-16 123.4 10.6 220 331-637 118-354 (368)
82 PRK14961 DNA polymerase III su 99.3 1.9E-10 4.1E-15 125.3 23.2 211 334-637 16-243 (363)
83 KOG0738 AAA+-type ATPase [Post 99.3 1.4E-11 3E-16 127.5 13.4 148 333-514 211-379 (491)
84 PRK13341 recombination factor 99.3 9.7E-11 2.1E-15 136.4 21.7 211 335-636 29-245 (725)
85 PRK14949 DNA polymerase III su 99.3 1.1E-10 2.5E-15 135.0 21.9 207 333-636 15-242 (944)
86 PRK07003 DNA polymerase III su 99.3 1.2E-10 2.6E-15 132.3 21.7 212 334-640 16-246 (830)
87 TIGR02639 ClpA ATP-dependent C 99.3 2.3E-11 5E-16 144.0 16.2 240 324-612 444-705 (731)
88 CHL00195 ycf46 Ycf46; Provisio 99.3 2.3E-11 4.9E-16 135.7 14.9 219 334-640 228-465 (489)
89 TIGR03420 DnaA_homol_Hda DnaA 99.3 3.1E-11 6.7E-16 122.8 14.8 182 368-635 39-225 (226)
90 PRK00411 cdc6 cell division co 99.3 5E-10 1.1E-14 123.9 24.7 296 334-716 30-358 (394)
91 KOG0730 AAA+-type ATPase [Post 99.3 2.2E-11 4.7E-16 134.4 13.1 224 334-641 434-677 (693)
92 PRK14960 DNA polymerase III su 99.3 1.3E-10 2.8E-15 130.9 19.5 208 334-636 15-241 (702)
93 KOG2028 ATPase related to the 99.3 3.4E-11 7.4E-16 123.5 13.0 221 334-636 138-366 (554)
94 TIGR01242 26Sp45 26S proteasom 99.3 2.2E-11 4.8E-16 132.9 12.6 223 335-637 123-362 (364)
95 KOG0989 Replication factor C, 99.3 6.1E-10 1.3E-14 112.7 21.0 199 335-633 37-249 (346)
96 PRK14958 DNA polymerase III su 99.3 2.4E-10 5.2E-15 128.8 20.3 210 334-638 16-244 (509)
97 PRK06645 DNA polymerase III su 99.3 5.7E-10 1.2E-14 125.0 22.5 215 334-638 21-256 (507)
98 PTZ00454 26S protease regulato 99.2 5.5E-11 1.2E-15 129.9 13.7 191 368-638 180-386 (398)
99 PRK08691 DNA polymerase III su 99.2 6.9E-10 1.5E-14 126.2 22.8 207 335-638 17-244 (709)
100 PTZ00112 origin recognition co 99.2 4.7E-10 1E-14 127.9 21.2 204 434-715 872-1085(1164)
101 PRK10865 protein disaggregatio 99.2 1.9E-10 4.2E-15 137.5 19.1 260 306-614 530-824 (857)
102 TIGR02639 ClpA ATP-dependent C 99.2 2.1E-10 4.5E-15 135.9 19.2 144 332-518 180-346 (731)
103 PRK12402 replication factor C 99.2 1.6E-09 3.6E-14 117.1 24.6 206 334-636 15-247 (337)
104 PRK12323 DNA polymerase III su 99.2 2.4E-10 5.2E-15 128.5 18.3 211 334-639 16-250 (700)
105 PRK00440 rfc replication facto 99.2 1.8E-09 3.8E-14 115.9 24.1 202 335-636 18-224 (319)
106 COG1219 ClpX ATP-dependent pro 99.2 3.5E-11 7.5E-16 121.8 9.8 156 326-483 53-228 (408)
107 PF07724 AAA_2: AAA domain (Cd 99.2 1.4E-11 3E-16 119.1 6.7 105 368-483 4-129 (171)
108 PRK08903 DnaA regulatory inact 99.2 4.6E-10 1E-14 114.3 18.1 179 368-635 43-223 (227)
109 CHL00095 clpC Clp protease ATP 99.2 6.4E-10 1.4E-14 133.3 21.1 261 305-612 470-775 (821)
110 TIGR03345 VI_ClpV1 type VI sec 99.2 4.1E-10 8.9E-15 134.3 18.9 240 324-613 556-825 (852)
111 PTZ00361 26 proteosome regulat 99.2 7.6E-11 1.6E-15 129.6 11.6 192 367-639 217-425 (438)
112 PRK14957 DNA polymerase III su 99.2 5.1E-10 1.1E-14 126.1 18.5 208 335-637 17-243 (546)
113 CHL00176 ftsH cell division pr 99.2 1.8E-10 3.9E-15 132.6 14.9 221 334-638 183-423 (638)
114 TIGR01241 FtsH_fam ATP-depende 99.2 2.7E-10 5.8E-15 129.4 15.8 118 368-518 89-226 (495)
115 COG1224 TIP49 DNA helicase TIP 99.2 7E-10 1.5E-14 114.0 17.1 145 432-642 292-436 (450)
116 PRK14964 DNA polymerase III su 99.2 1.2E-09 2.5E-14 121.5 20.2 210 334-638 13-241 (491)
117 PRK07994 DNA polymerase III su 99.2 2.5E-09 5.5E-14 122.3 22.8 208 333-636 15-242 (647)
118 PF12775 AAA_7: P-loop contain 99.2 5.4E-10 1.2E-14 116.2 15.5 210 368-615 34-252 (272)
119 PRK05896 DNA polymerase III su 99.2 1.5E-09 3.3E-14 122.4 20.0 214 328-636 10-242 (605)
120 PRK14951 DNA polymerase III su 99.2 1.6E-09 3.5E-14 123.6 20.5 206 335-637 17-248 (618)
121 PRK05201 hslU ATP-dependent pr 99.2 3.8E-10 8.3E-15 121.1 14.5 143 430-616 248-404 (443)
122 PRK08451 DNA polymerase III su 99.1 3.7E-09 8.1E-14 118.5 22.3 207 334-636 14-240 (535)
123 TIGR00390 hslU ATP-dependent p 99.1 9.3E-10 2E-14 118.1 16.2 144 430-616 246-402 (441)
124 PRK14959 DNA polymerase III su 99.1 3.8E-09 8.1E-14 119.8 21.6 210 335-637 17-243 (624)
125 COG0542 clpA ATP-binding subun 99.1 1.6E-09 3.5E-14 124.3 18.3 240 323-612 480-748 (786)
126 KOG0736 Peroxisome assembly fa 99.1 1.2E-09 2.7E-14 121.9 16.7 167 335-533 673-859 (953)
127 PRK05563 DNA polymerase III su 99.1 6.6E-09 1.4E-13 118.8 22.2 212 332-636 14-242 (559)
128 PRK14963 DNA polymerase III su 99.1 5.5E-09 1.2E-13 117.6 21.1 210 332-636 12-238 (504)
129 PRK14952 DNA polymerase III su 99.1 7.9E-09 1.7E-13 117.6 21.0 212 332-636 11-242 (584)
130 PRK14969 DNA polymerase III su 99.1 1.4E-08 3E-13 115.4 22.8 207 335-636 17-242 (527)
131 COG1474 CDC6 Cdc6-related prot 99.1 1.1E-08 2.5E-13 110.5 21.0 269 368-717 43-335 (366)
132 PF14532 Sigma54_activ_2: Sigm 99.1 2.2E-10 4.8E-15 107.1 6.8 115 368-516 22-137 (138)
133 TIGR02397 dnaX_nterm DNA polym 99.1 1.5E-08 3.2E-13 110.5 22.2 210 333-636 13-240 (355)
134 PRK14955 DNA polymerase III su 99.1 2.8E-09 6E-14 117.5 16.5 220 327-635 5-254 (397)
135 PRK06647 DNA polymerase III su 99.1 4.1E-08 8.8E-13 112.0 26.1 207 335-636 17-242 (563)
136 KOG0731 AAA+-type ATPase conta 99.1 2.7E-09 5.9E-14 121.6 16.0 211 309-636 320-551 (774)
137 PRK14965 DNA polymerase III su 99.1 9.6E-09 2.1E-13 118.0 20.7 209 334-635 16-241 (576)
138 TIGR01243 CDC48 AAA family ATP 99.0 1.7E-09 3.6E-14 128.6 15.0 153 334-518 453-623 (733)
139 cd00009 AAA The AAA+ (ATPases 99.0 7E-10 1.5E-14 103.7 9.2 143 338-515 2-150 (151)
140 smart00763 AAA_PrkA PrkA AAA d 99.0 1.8E-09 4E-14 114.4 13.1 99 424-532 229-328 (361)
141 PRK07764 DNA polymerase III su 99.0 1.2E-08 2.7E-13 120.4 21.2 206 335-635 16-243 (824)
142 PRK07133 DNA polymerase III su 99.0 2.3E-08 5E-13 115.1 22.5 210 335-637 19-242 (725)
143 KOG0737 AAA+-type ATPase [Post 99.0 3.3E-10 7.2E-15 117.6 6.6 158 334-517 92-261 (386)
144 KOG0652 26S proteasome regulat 99.0 1.4E-09 3.1E-14 106.9 10.7 193 364-639 202-413 (424)
145 CHL00206 ycf2 Ycf2; Provisiona 99.0 2.3E-09 5E-14 130.6 14.5 198 368-636 1631-1875(2281)
146 PRK06620 hypothetical protein; 99.0 9.6E-09 2.1E-13 103.2 16.7 163 368-635 45-213 (214)
147 PRK14950 DNA polymerase III su 99.0 2.2E-08 4.8E-13 115.6 21.9 210 332-636 14-243 (585)
148 COG0464 SpoVK ATPases of the A 99.0 3.5E-09 7.6E-14 120.6 15.0 220 335-640 243-485 (494)
149 PRK14953 DNA polymerase III su 99.0 2.1E-08 4.5E-13 112.6 20.7 207 334-636 16-242 (486)
150 PRK11034 clpA ATP-dependent Cl 99.0 1.3E-08 2.8E-13 119.4 19.5 195 335-579 187-405 (758)
151 TIGR03689 pup_AAA proteasome A 99.0 1.4E-09 3E-14 121.3 10.7 127 368-518 217-366 (512)
152 PRK06305 DNA polymerase III su 99.0 1.7E-08 3.8E-13 112.5 19.2 203 335-635 18-243 (451)
153 PRK14954 DNA polymerase III su 99.0 6.3E-08 1.4E-12 111.1 23.8 211 334-635 16-254 (620)
154 PRK08084 DNA replication initi 99.0 6.6E-09 1.4E-13 106.2 14.2 181 368-636 46-234 (235)
155 KOG0739 AAA+-type ATPase [Post 99.0 8.5E-10 1.8E-14 110.6 6.4 168 333-537 132-314 (439)
156 COG0465 HflB ATP-dependent Zn 98.9 4.3E-09 9.4E-14 117.9 12.2 134 368-538 184-336 (596)
157 PRK11331 5-methylcytosine-spec 98.9 1.2E-08 2.6E-13 111.0 15.0 158 333-515 174-357 (459)
158 KOG0745 Putative ATP-dependent 98.9 7.5E-09 1.6E-13 108.9 12.7 101 367-467 226-341 (564)
159 PRK12422 chromosomal replicati 98.9 1.4E-08 3.1E-13 112.8 15.8 187 368-637 142-342 (445)
160 CHL00095 clpC Clp protease ATP 98.9 6.1E-08 1.3E-12 116.4 22.0 209 334-585 179-403 (821)
161 COG5271 MDN1 AAA ATPase contai 98.9 1.9E-08 4.1E-13 118.6 16.4 138 368-512 1544-1686(4600)
162 PRK00149 dnaA chromosomal repl 98.9 8E-09 1.7E-13 116.0 13.3 190 368-638 149-349 (450)
163 PF00004 AAA: ATPase family as 98.9 6.6E-10 1.4E-14 102.5 3.7 117 370-515 1-131 (132)
164 PRK14970 DNA polymerase III su 98.9 3.8E-08 8.2E-13 107.8 18.0 206 335-636 18-231 (367)
165 PRK06893 DNA replication initi 98.9 3.7E-08 7.9E-13 100.4 16.6 181 368-636 40-228 (229)
166 KOG0733 Nuclear AAA ATPase (VC 98.9 8.2E-09 1.8E-13 112.7 12.1 146 368-537 224-376 (802)
167 KOG1942 DNA helicase, TBP-inte 98.9 6.7E-08 1.4E-12 96.9 17.4 145 432-641 297-441 (456)
168 PRK09111 DNA polymerase III su 98.9 4.2E-08 9.2E-13 112.3 18.5 208 335-636 25-255 (598)
169 PHA02544 44 clamp loader, smal 98.9 3.7E-07 8E-12 97.9 24.7 131 335-511 22-155 (316)
170 PRK14087 dnaA chromosomal repl 98.9 1.5E-08 3.3E-13 112.9 14.4 192 368-637 142-347 (450)
171 PRK10733 hflB ATP-dependent me 98.9 1.3E-08 2.8E-13 118.6 14.3 185 369-636 187-390 (644)
172 TIGR03345 VI_ClpV1 type VI sec 98.9 1.5E-08 3.2E-13 121.2 15.0 211 331-584 184-411 (852)
173 PRK09087 hypothetical protein; 98.9 2.9E-08 6.2E-13 100.7 14.7 176 368-638 45-222 (226)
174 PRK08727 hypothetical protein; 98.9 3.6E-08 7.8E-13 100.7 15.2 178 368-636 42-229 (233)
175 PRK14086 dnaA chromosomal repl 98.9 2.3E-08 5.1E-13 112.9 15.0 190 369-638 316-515 (617)
176 KOG0733 Nuclear AAA ATPase (VC 98.9 2.3E-08 5.1E-13 109.3 13.9 149 336-515 513-677 (802)
177 PRK14948 DNA polymerase III su 98.9 1E-07 2.2E-12 110.0 20.0 209 333-635 15-242 (620)
178 COG1067 LonB Predicted ATP-dep 98.8 5.9E-08 1.3E-12 110.8 16.7 223 368-637 132-398 (647)
179 TIGR02688 conserved hypothetic 98.8 1.4E-07 3.1E-12 101.4 18.4 247 323-638 174-433 (449)
180 PRK14971 DNA polymerase III su 98.8 1.8E-07 4E-12 107.9 20.8 207 335-635 18-243 (614)
181 PLN00020 ribulose bisphosphate 98.8 7.2E-09 1.6E-13 108.9 8.0 128 368-514 149-297 (413)
182 PRK04195 replication factor C 98.8 7.3E-08 1.6E-12 109.1 16.7 118 335-484 15-140 (482)
183 PRK14088 dnaA chromosomal repl 98.8 6.1E-08 1.3E-12 108.0 14.5 190 368-637 131-331 (440)
184 TIGR00362 DnaA chromosomal rep 98.8 4E-08 8.6E-13 109.0 12.2 189 368-637 137-336 (405)
185 COG1220 HslU ATP-dependent pro 98.8 2.3E-08 5.1E-13 102.3 9.2 139 431-612 250-401 (444)
186 PRK10865 protein disaggregatio 98.7 5.8E-08 1.3E-12 116.5 13.4 204 333-579 177-397 (857)
187 PRK05642 DNA replication initi 98.7 1.7E-07 3.7E-12 95.8 14.4 179 368-635 46-232 (234)
188 KOG0991 Replication factor C, 98.7 2.6E-07 5.7E-12 90.0 13.7 157 329-534 22-185 (333)
189 TIGR03015 pepcterm_ATPase puta 98.7 5.8E-07 1.2E-11 94.0 16.9 203 368-638 44-266 (269)
190 COG2812 DnaX DNA polymerase II 98.7 4.7E-07 1E-11 100.6 16.3 223 325-641 7-247 (515)
191 COG5271 MDN1 AAA ATPase contai 98.7 2E-07 4.3E-12 110.4 13.4 143 367-518 888-1035(4600)
192 PRK07940 DNA polymerase III su 98.7 3.3E-07 7.2E-12 100.2 14.6 157 332-518 3-177 (394)
193 TIGR01243 CDC48 AAA family ATP 98.7 1.5E-07 3.3E-12 112.1 13.0 150 335-518 179-347 (733)
194 KOG0727 26S proteasome regulat 98.6 1.4E-07 3E-12 92.8 10.2 93 369-483 191-303 (408)
195 TIGR03346 chaperone_ClpB ATP-d 98.6 2.8E-07 6E-12 111.1 15.0 208 334-584 173-397 (852)
196 PF00308 Bac_DnaA: Bacterial d 98.6 1.2E-07 2.6E-12 95.7 9.1 173 368-620 35-218 (219)
197 KOG0728 26S proteasome regulat 98.6 4.3E-07 9.4E-12 89.3 12.3 135 369-538 183-334 (404)
198 PF13337 Lon_2: Putative ATP-d 98.6 4.2E-06 9.1E-11 90.8 20.9 251 320-639 170-432 (457)
199 PRK04132 replication factor C 98.6 2.4E-06 5.2E-11 100.6 19.1 181 368-636 565-752 (846)
200 PRK09112 DNA polymerase III su 98.6 1.5E-06 3.2E-11 93.8 16.0 49 333-392 22-70 (351)
201 PF06068 TIP49: TIP49 C-termin 98.5 5.6E-07 1.2E-11 94.7 11.7 97 433-580 280-380 (398)
202 KOG0729 26S proteasome regulat 98.5 1.7E-07 3.6E-12 92.9 6.4 135 369-539 213-365 (435)
203 KOG0742 AAA+-type ATPase [Post 98.5 1.8E-06 3.8E-11 90.6 13.8 138 368-535 385-532 (630)
204 KOG1051 Chaperone HSP104 and r 98.5 5.5E-07 1.2E-11 105.2 10.7 151 323-483 551-710 (898)
205 KOG0740 AAA+-type ATPase [Post 98.4 1.3E-07 2.7E-12 102.1 4.3 171 333-533 152-335 (428)
206 KOG0735 AAA+-type ATPase [Post 98.4 8.2E-07 1.8E-11 98.9 10.0 154 335-520 668-837 (952)
207 TIGR02653 Lon_rel_chp conserve 98.4 2.2E-05 4.8E-10 88.6 20.9 250 322-639 180-441 (675)
208 COG0593 DnaA ATPase involved i 98.4 5.6E-06 1.2E-10 89.6 15.1 193 368-641 114-316 (408)
209 PF12774 AAA_6: Hydrolytic ATP 98.4 4.7E-06 1E-10 84.4 13.7 186 368-619 33-228 (231)
210 PHA01747 putative ATP-dependen 98.4 8.3E-06 1.8E-10 85.4 14.9 167 325-510 150-337 (425)
211 PRK15455 PrkA family serine pr 98.3 1.1E-05 2.3E-10 90.1 15.8 99 424-532 248-347 (644)
212 smart00382 AAA ATPases associa 98.3 1E-06 2.2E-11 81.3 6.0 130 368-514 3-144 (148)
213 KOG0744 AAA+-type ATPase [Post 98.3 6.3E-06 1.4E-10 84.3 11.0 148 340-520 153-330 (423)
214 KOG0730 AAA+-type ATPase [Post 98.2 3.3E-05 7.2E-10 86.3 15.8 119 365-514 216-348 (693)
215 TIGR00678 holB DNA polymerase 98.2 1.4E-05 2.9E-10 78.9 11.6 59 430-515 95-153 (188)
216 PRK07471 DNA polymerase III su 98.2 2.7E-05 5.8E-10 84.6 14.6 47 334-391 19-65 (365)
217 PRK06526 transposase; Provisio 98.2 5.4E-07 1.2E-11 92.9 0.9 140 342-508 81-222 (254)
218 KOG0651 26S proteasome regulat 98.1 2.7E-06 6E-11 86.5 5.4 101 368-484 167-281 (388)
219 PF05673 DUF815: Protein of un 98.1 4.9E-05 1.1E-09 76.4 13.7 161 336-531 29-207 (249)
220 KOG0726 26S proteasome regulat 98.1 4.7E-06 1E-10 83.9 5.6 133 368-536 220-370 (440)
221 PRK07399 DNA polymerase III su 98.1 0.0001 2.2E-09 78.5 16.1 48 333-391 3-50 (314)
222 KOG0743 AAA+-type ATPase [Post 98.1 5.3E-06 1.2E-10 89.1 6.1 111 370-515 238-368 (457)
223 COG0542 clpA ATP-binding subun 98.1 0.00015 3.1E-09 84.3 18.1 207 332-585 169-395 (786)
224 KOG2545 Conserved membrane pro 98.0 0.00062 1.4E-08 71.9 20.7 323 243-638 203-535 (543)
225 PRK05564 DNA polymerase III su 98.0 0.00014 3E-09 77.9 16.2 142 333-518 3-153 (313)
226 KOG0741 AAA+-type ATPase [Post 98.0 5E-06 1.1E-10 89.9 5.0 24 369-392 258-281 (744)
227 PF13177 DNA_pol3_delta2: DNA 98.0 2.9E-05 6.2E-10 74.6 9.3 132 338-509 1-154 (162)
228 COG0470 HolB ATPase involved i 98.0 1.6E-05 3.6E-10 85.3 8.6 141 335-512 2-164 (325)
229 COG5245 DYN1 Dynein, heavy cha 97.9 2.9E-05 6.3E-10 92.3 9.7 149 432-621 1564-1719(3164)
230 PRK12377 putative replication 97.9 2.2E-06 4.8E-11 87.7 0.2 118 368-508 102-222 (248)
231 KOG2680 DNA helicase TIP49, TB 97.9 0.00045 9.7E-09 70.3 16.1 176 368-641 253-432 (454)
232 PRK08181 transposase; Validate 97.9 2.6E-06 5.6E-11 88.3 0.2 118 368-508 107-230 (269)
233 KOG0990 Replication factor C, 97.9 0.0001 2.2E-09 75.8 11.3 113 368-509 63-183 (360)
234 PRK08058 DNA polymerase III su 97.9 5.7E-05 1.2E-09 81.2 10.1 144 335-518 6-170 (329)
235 PF01695 IstB_IS21: IstB-like 97.8 1.1E-06 2.5E-11 85.6 -3.9 119 367-508 47-171 (178)
236 KOG1514 Origin recognition com 97.8 0.0013 2.7E-08 74.4 19.0 146 432-644 509-661 (767)
237 PRK09183 transposase/IS protei 97.8 1.2E-05 2.5E-10 83.4 2.7 120 366-508 101-228 (259)
238 PRK08116 hypothetical protein; 97.8 1.1E-05 2.3E-10 84.1 2.4 98 368-483 115-220 (268)
239 PF13335 Mg_chelatase_2: Magne 97.7 0.00025 5.5E-09 61.4 9.7 90 522-637 4-95 (96)
240 KOG0732 AAA+-type ATPase conta 97.7 0.00047 1E-08 81.8 14.4 159 333-538 264-454 (1080)
241 COG1484 DnaC DNA replication p 97.6 1.2E-05 2.6E-10 82.9 0.3 144 336-508 81-230 (254)
242 TIGR00602 rad24 checkpoint pro 97.6 0.00069 1.5E-08 78.2 14.5 56 332-394 82-137 (637)
243 PF00910 RNA_helicase: RNA hel 97.6 7.7E-05 1.7E-09 66.3 4.8 99 370-482 1-106 (107)
244 PF05621 TniB: Bacterial TniB 97.6 0.0018 4E-08 67.3 15.4 60 327-394 27-88 (302)
245 PRK05707 DNA polymerase III su 97.5 0.00025 5.5E-09 75.9 8.8 62 430-518 105-166 (328)
246 COG1618 Predicted nucleotide k 97.5 0.00052 1.1E-08 64.0 9.4 27 367-393 5-31 (179)
247 PRK06835 DNA replication prote 97.5 3E-05 6.5E-10 82.8 1.0 96 368-483 184-288 (329)
248 KOG1808 AAA ATPase containing 97.5 0.00019 4E-09 89.6 7.7 135 368-510 441-580 (1856)
249 PRK06921 hypothetical protein; 97.5 4.8E-05 1E-09 79.1 2.0 95 368-484 118-225 (266)
250 PRK07952 DNA replication prote 97.5 4E-05 8.6E-10 78.4 1.3 113 368-508 100-221 (244)
251 PF13654 AAA_32: AAA domain; P 97.4 0.00048 1E-08 77.8 9.7 168 421-636 322-504 (509)
252 KOG1969 DNA replication checkp 97.4 0.001 2.3E-08 75.3 11.7 78 369-456 328-412 (877)
253 PF05491 RuvB_C: Holliday junc 97.4 0.00022 4.8E-09 57.7 4.3 65 654-726 4-69 (76)
254 COG2607 Predicted ATPase (AAA+ 97.3 0.0026 5.6E-08 63.2 12.0 151 336-518 62-227 (287)
255 KOG2035 Replication factor C, 97.3 0.00098 2.1E-08 67.3 8.4 62 433-521 129-190 (351)
256 PRK06871 DNA polymerase III su 97.3 0.031 6.7E-07 59.7 20.3 59 432-518 108-167 (325)
257 PF08298 AAA_PrkA: PrkA AAA do 97.3 0.0011 2.4E-08 70.2 9.1 98 424-531 226-324 (358)
258 KOG0736 Peroxisome assembly fa 97.2 0.022 4.7E-07 65.3 18.8 134 363-521 427-567 (953)
259 KOG2170 ATPase of the AAA+ sup 97.2 0.00034 7.3E-09 71.5 4.2 125 324-457 72-204 (344)
260 PF05272 VirE: Virulence-assoc 97.2 0.00048 1E-08 68.2 5.0 97 366-483 51-149 (198)
261 PF03266 NTPase_1: NTPase; In 97.2 0.00048 1E-08 66.4 4.8 23 369-391 1-23 (168)
262 PF13148 DUF3987: Protein of u 97.1 0.0041 9E-08 68.4 12.7 189 432-643 150-365 (378)
263 PHA02774 E1; Provisional 97.1 0.0016 3.5E-08 73.1 8.4 97 368-483 435-532 (613)
264 PRK08939 primosomal protein Dn 97.1 0.00022 4.8E-09 75.6 1.6 25 368-392 157-181 (306)
265 TIGR01613 primase_Cterm phage/ 97.0 0.025 5.4E-07 60.3 16.9 141 368-531 77-219 (304)
266 PF13401 AAA_22: AAA domain; P 97.0 0.00042 9.1E-09 63.6 2.5 26 366-391 3-28 (131)
267 PRK08769 DNA polymerase III su 97.0 0.0042 9.1E-08 66.1 10.4 55 432-512 114-168 (319)
268 PRK06964 DNA polymerase III su 96.8 0.0044 9.6E-08 66.5 9.3 60 432-519 133-193 (342)
269 PRK08699 DNA polymerase III su 96.8 0.0028 6E-08 67.9 7.6 29 430-458 112-140 (325)
270 COG4930 Predicted ATP-dependen 96.8 0.019 4E-07 60.9 13.3 144 309-482 176-326 (683)
271 COG3267 ExeA Type II secretory 96.8 0.0061 1.3E-07 61.4 9.3 198 368-632 52-267 (269)
272 PHA02624 large T antigen; Prov 96.8 0.0032 7E-08 71.1 7.7 119 368-517 432-562 (647)
273 PF13173 AAA_14: AAA domain 96.7 0.0042 9.2E-08 57.0 7.0 81 368-457 3-86 (128)
274 PRK07993 DNA polymerase III su 96.7 0.0066 1.4E-07 65.3 9.5 61 430-518 107-168 (334)
275 PF01637 Arch_ATPase: Archaeal 96.7 0.0052 1.1E-07 62.1 8.3 26 368-393 21-46 (234)
276 PF06309 Torsin: Torsin; Inte 96.7 0.0023 4.9E-08 57.8 4.9 62 325-391 16-77 (127)
277 COG3854 SpoIIIAA ncharacterize 96.7 0.005 1.1E-07 60.8 7.1 29 366-394 136-164 (308)
278 PRK06090 DNA polymerase III su 96.7 0.013 2.7E-07 62.5 10.9 59 432-518 109-168 (319)
279 PF03969 AFG1_ATPase: AFG1-lik 96.6 0.00073 1.6E-08 73.2 1.4 26 368-393 63-88 (362)
280 PRK05917 DNA polymerase III su 96.5 0.017 3.8E-07 60.3 10.2 55 431-512 95-150 (290)
281 KOG2227 Pre-initiation complex 96.4 0.045 9.8E-07 59.6 12.8 107 599-714 360-489 (529)
282 cd01120 RecA-like_NTPases RecA 96.4 0.0087 1.9E-07 56.6 6.8 24 369-392 1-24 (165)
283 PF00519 PPV_E1_C: Papillomavi 96.2 0.027 5.8E-07 60.3 9.9 96 368-483 263-360 (432)
284 PF05729 NACHT: NACHT domain 96.2 0.0084 1.8E-07 57.1 5.8 22 370-391 3-24 (166)
285 PRK13695 putative NTPase; Prov 95.9 0.036 7.8E-07 53.8 8.9 22 369-390 2-23 (174)
286 PRK10536 hypothetical protein; 95.9 0.021 4.5E-07 58.4 7.2 22 368-389 75-96 (262)
287 PF13671 AAA_33: AAA domain; P 95.7 0.0075 1.6E-07 56.2 2.9 23 370-392 2-24 (143)
288 PF01443 Viral_helicase1: Vira 95.6 0.021 4.5E-07 58.1 6.2 21 370-390 1-21 (234)
289 KOG3347 Predicted nucleotide k 95.6 0.0086 1.9E-07 55.2 2.7 32 365-396 5-36 (176)
290 PF13207 AAA_17: AAA domain; P 95.6 0.0079 1.7E-07 54.3 2.5 24 370-393 2-25 (121)
291 PF13604 AAA_30: AAA domain; P 95.4 0.017 3.7E-07 57.3 4.5 29 429-457 91-119 (196)
292 PF01057 Parvo_NS1: Parvovirus 95.4 0.046 9.9E-07 56.7 7.7 94 369-483 115-208 (271)
293 PHA00729 NTP-binding motif con 95.4 0.011 2.4E-07 59.4 3.0 25 368-392 18-42 (226)
294 PRK14532 adenylate kinase; Pro 95.4 0.016 3.4E-07 57.0 4.1 28 369-396 2-29 (188)
295 KOG0735 AAA+-type ATPase [Post 95.2 0.33 7.2E-06 55.6 14.0 27 368-394 432-458 (952)
296 TIGR02768 TraA_Ti Ti-type conj 95.2 0.04 8.6E-07 65.8 7.4 84 369-456 370-464 (744)
297 PF03215 Rad17: Rad17 cell cyc 95.2 0.081 1.8E-06 60.2 9.5 28 369-396 47-74 (519)
298 PRK13947 shikimate kinase; Pro 95.1 0.021 4.5E-07 55.1 4.0 28 369-396 3-30 (171)
299 PRK08118 topology modulation p 95.1 0.017 3.7E-07 55.7 3.3 28 369-396 3-30 (167)
300 TIGR01447 recD exodeoxyribonuc 95.1 0.044 9.6E-07 63.4 7.1 26 432-457 260-285 (586)
301 PF13191 AAA_16: AAA ATPase do 95.1 0.023 5E-07 55.2 4.1 47 336-391 2-48 (185)
302 PRK04296 thymidine kinase; Pro 95.0 0.037 8.1E-07 54.6 5.5 21 369-389 4-24 (190)
303 PF09848 DUF2075: Uncharacteri 95.0 0.018 3.9E-07 62.7 3.4 23 369-391 3-25 (352)
304 PRK14530 adenylate kinase; Pro 95.0 0.024 5.2E-07 57.1 4.1 29 368-396 4-32 (215)
305 PRK00131 aroK shikimate kinase 95.0 0.023 5E-07 54.7 3.8 29 368-396 5-33 (175)
306 cd01131 PilT Pilus retraction 94.9 0.083 1.8E-06 52.5 7.7 24 369-392 3-26 (198)
307 PF05970 PIF1: PIF1-like helic 94.9 0.046 9.9E-07 59.8 6.4 85 368-456 23-127 (364)
308 COG0563 Adk Adenylate kinase a 94.9 0.022 4.7E-07 55.5 3.4 27 369-395 2-28 (178)
309 PRK03839 putative kinase; Prov 94.9 0.024 5.2E-07 55.3 3.7 28 369-396 2-29 (180)
310 cd00464 SK Shikimate kinase (S 94.9 0.022 4.8E-07 53.7 3.4 28 369-396 1-28 (154)
311 COG4619 ABC-type uncharacteriz 94.9 0.043 9.2E-07 51.9 4.9 30 365-394 27-56 (223)
312 COG2766 PrkA Putative Ser prot 94.8 2.6 5.6E-05 47.4 19.2 58 424-483 249-306 (649)
313 PRK07261 topology modulation p 94.8 0.029 6.4E-07 54.3 4.0 24 369-392 2-25 (171)
314 TIGR01359 UMP_CMP_kin_fam UMP- 94.8 0.029 6.3E-07 54.8 4.0 25 370-394 2-26 (183)
315 COG1126 GlnQ ABC-type polar am 94.8 0.0083 1.8E-07 59.0 0.1 24 368-391 29-52 (240)
316 PF05049 IIGP: Interferon-indu 94.8 2.1 4.6E-05 46.5 18.3 188 504-705 111-312 (376)
317 KOG3595 Dyneins, heavy chain [ 94.7 0.21 4.5E-06 63.9 12.2 151 368-534 128-289 (1395)
318 PRK00625 shikimate kinase; Pro 94.7 0.029 6.4E-07 54.3 3.7 28 369-396 2-29 (173)
319 PRK14709 hypothetical protein; 94.6 0.58 1.3E-05 52.8 14.3 140 368-530 206-346 (469)
320 PRK07132 DNA polymerase III su 94.6 0.27 5.8E-06 52.0 11.0 60 431-518 90-150 (299)
321 PF13245 AAA_19: Part of AAA d 94.6 0.032 6.9E-07 46.1 3.2 23 369-391 12-35 (76)
322 PF13238 AAA_18: AAA domain; P 94.6 0.024 5.1E-07 51.5 2.6 22 370-391 1-22 (129)
323 cd02019 NK Nucleoside/nucleoti 94.6 0.03 6.5E-07 45.3 2.9 22 370-391 2-23 (69)
324 PTZ00088 adenylate kinase 1; P 94.5 0.043 9.4E-07 55.7 4.6 29 368-396 7-35 (229)
325 PRK13949 shikimate kinase; Pro 94.5 0.035 7.7E-07 53.6 3.7 28 369-396 3-30 (169)
326 PRK13826 Dtr system oriT relax 94.5 0.076 1.7E-06 65.0 7.3 85 368-457 398-494 (1102)
327 PRK13889 conjugal transfer rel 94.5 0.064 1.4E-06 65.3 6.6 84 369-456 364-458 (988)
328 PRK10875 recD exonuclease V su 94.5 0.099 2.2E-06 60.7 7.9 25 433-457 267-291 (615)
329 KOG0741 AAA+-type ATPase [Post 94.4 0.073 1.6E-06 58.7 6.1 124 368-520 539-675 (744)
330 PF01325 Fe_dep_repress: Iron 94.4 0.25 5.5E-06 38.7 7.6 57 657-720 3-59 (60)
331 TIGR00150 HI0065_YjeE ATPase, 94.4 0.069 1.5E-06 49.2 5.1 26 368-393 23-48 (133)
332 PRK14531 adenylate kinase; Pro 94.4 0.041 8.8E-07 53.9 3.9 28 368-395 3-30 (183)
333 PRK06762 hypothetical protein; 94.3 0.039 8.5E-07 53.0 3.7 26 369-394 4-29 (166)
334 cd01130 VirB11-like_ATPase Typ 94.3 0.069 1.5E-06 52.4 5.3 26 368-393 26-51 (186)
335 TIGR01448 recD_rel helicase, p 94.2 0.071 1.5E-06 63.5 6.2 88 369-456 340-441 (720)
336 cd02021 GntK Gluconate kinase 94.2 0.042 9.1E-07 51.7 3.5 24 370-393 2-25 (150)
337 cd01428 ADK Adenylate kinase ( 94.2 0.047 1E-06 53.7 3.9 27 369-395 1-27 (194)
338 PRK10078 ribose 1,5-bisphospho 94.2 0.045 9.7E-07 53.8 3.7 29 368-396 3-31 (186)
339 PRK06217 hypothetical protein; 94.1 0.049 1.1E-06 53.3 3.8 28 369-396 3-30 (183)
340 PF06048 DUF927: Domain of unk 94.1 0.046 9.9E-07 57.7 3.8 69 368-451 194-262 (286)
341 PRK13900 type IV secretion sys 94.0 0.061 1.3E-06 57.8 4.7 26 368-393 161-186 (332)
342 TIGR01313 therm_gnt_kin carboh 94.0 0.042 9E-07 52.6 3.2 24 370-393 1-24 (163)
343 PF13086 AAA_11: AAA domain; P 94.0 0.052 1.1E-06 54.7 4.0 21 370-390 20-40 (236)
344 TIGR01360 aden_kin_iso1 adenyl 93.9 0.042 9E-07 53.8 2.9 25 368-392 4-28 (188)
345 cd00227 CPT Chloramphenicol (C 93.9 0.046 1E-06 53.0 3.2 27 368-394 3-29 (175)
346 PRK05057 aroK shikimate kinase 93.9 0.065 1.4E-06 51.9 4.2 29 368-396 5-33 (172)
347 PRK14526 adenylate kinase; Pro 93.9 0.059 1.3E-06 54.1 3.9 28 369-396 2-29 (211)
348 PF13555 AAA_29: P-loop contai 93.8 0.056 1.2E-06 42.5 2.9 23 369-391 25-47 (62)
349 cd03222 ABC_RNaseL_inhibitor T 93.8 0.062 1.4E-06 52.3 3.9 83 368-457 26-116 (177)
350 PRK14528 adenylate kinase; Pro 93.8 0.062 1.3E-06 52.8 3.9 28 369-396 3-30 (186)
351 TIGR02322 phosphon_PhnN phosph 93.7 0.051 1.1E-06 52.8 3.1 24 369-392 3-26 (179)
352 PRK14700 recombination factor 93.6 0.34 7.3E-06 50.6 9.0 51 566-636 63-113 (300)
353 COG0703 AroK Shikimate kinase 93.6 0.062 1.3E-06 51.5 3.3 29 368-396 3-31 (172)
354 COG1116 TauB ABC-type nitrate/ 93.5 0.05 1.1E-06 54.9 2.8 27 368-394 30-56 (248)
355 TIGR01618 phage_P_loop phage n 93.5 0.053 1.1E-06 54.5 2.9 24 365-388 10-33 (220)
356 COG1373 Predicted ATPase (AAA+ 93.5 1.9 4E-05 47.8 15.3 49 664-716 222-270 (398)
357 PLN02200 adenylate kinase fami 93.5 0.082 1.8E-06 53.9 4.3 28 368-395 44-71 (234)
358 TIGR01351 adk adenylate kinase 93.4 0.069 1.5E-06 53.6 3.6 27 370-396 2-28 (210)
359 PTZ00301 uridine kinase; Provi 93.4 0.21 4.5E-06 50.1 7.0 24 368-391 4-27 (210)
360 PRK02496 adk adenylate kinase; 93.4 0.066 1.4E-06 52.4 3.3 26 369-394 3-28 (184)
361 COG1936 Predicted nucleotide k 93.4 0.23 4.9E-06 47.4 6.6 21 369-389 2-22 (180)
362 cd02020 CMPK Cytidine monophos 93.3 0.079 1.7E-06 49.4 3.6 27 370-396 2-28 (147)
363 PRK13946 shikimate kinase; Pro 93.3 0.084 1.8E-06 51.7 4.0 31 366-396 9-39 (184)
364 PF08477 Miro: Miro-like prote 93.3 0.066 1.4E-06 47.9 3.0 24 369-392 1-24 (119)
365 PRK08233 hypothetical protein; 93.3 0.065 1.4E-06 52.1 3.1 25 368-392 4-28 (182)
366 PRK00279 adk adenylate kinase; 93.3 0.088 1.9E-06 53.0 4.1 28 369-396 2-29 (215)
367 PRK13851 type IV secretion sys 93.3 0.11 2.3E-06 56.1 4.9 26 368-393 163-188 (344)
368 PRK05439 pantothenate kinase; 93.2 0.16 3.4E-06 53.9 5.9 81 303-392 25-111 (311)
369 cd01129 PulE-GspE PulE/GspE Th 93.2 0.54 1.2E-05 48.9 9.9 24 369-392 82-105 (264)
370 PRK06547 hypothetical protein; 93.2 0.15 3.2E-06 49.4 5.3 25 368-392 16-40 (172)
371 KOG0060 Long-chain acyl-CoA tr 93.2 0.061 1.3E-06 60.1 2.9 29 364-392 458-486 (659)
372 TIGR01420 pilT_fam pilus retra 93.1 0.3 6.6E-06 52.9 8.1 25 368-392 123-147 (343)
373 COG3839 MalK ABC-type sugar tr 93.0 0.073 1.6E-06 56.8 3.1 25 368-392 30-54 (338)
374 PLN02459 probable adenylate ki 92.9 0.13 2.9E-06 52.9 4.8 29 368-396 30-58 (261)
375 PRK03731 aroL shikimate kinase 92.9 0.098 2.1E-06 50.4 3.6 28 369-396 4-31 (171)
376 COG3378 Phage associated DNA p 92.8 0.49 1.1E-05 53.5 9.5 31 368-398 231-261 (517)
377 PRK13948 shikimate kinase; Pro 92.8 0.11 2.3E-06 50.9 3.8 29 368-396 11-39 (182)
378 cd00071 GMPK Guanosine monopho 92.8 0.084 1.8E-06 49.1 3.0 25 370-394 2-26 (137)
379 PHA02530 pseT polynucleotide k 92.8 0.096 2.1E-06 55.6 3.8 26 368-393 3-28 (300)
380 PF08461 HTH_12: Ribonuclease 92.8 0.21 4.5E-06 40.0 4.8 57 667-726 3-62 (66)
381 PF08220 HTH_DeoR: DeoR-like h 92.7 0.27 5.8E-06 38.1 5.2 52 665-723 3-54 (57)
382 TIGR03263 guanyl_kin guanylate 92.7 0.077 1.7E-06 51.6 2.7 25 369-393 3-27 (180)
383 PRK14527 adenylate kinase; Pro 92.7 0.085 1.8E-06 52.0 3.0 25 368-392 7-31 (191)
384 COG1120 FepC ABC-type cobalami 92.7 0.033 7E-07 57.1 -0.0 25 368-392 29-53 (258)
385 PLN02674 adenylate kinase 92.7 0.12 2.5E-06 53.0 4.0 28 368-395 32-59 (244)
386 TIGR00235 udk uridine kinase. 92.7 0.094 2E-06 52.4 3.3 25 368-392 7-31 (207)
387 PRK14529 adenylate kinase; Pro 92.6 0.092 2E-06 53.0 3.1 27 369-395 2-28 (223)
388 COG1102 Cmk Cytidylate kinase 92.6 0.098 2.1E-06 49.2 3.0 28 370-397 3-30 (179)
389 PRK00300 gmk guanylate kinase; 92.6 0.091 2E-06 52.3 3.0 25 368-392 6-30 (205)
390 PF13521 AAA_28: AAA domain; P 92.5 0.093 2E-06 50.2 2.9 21 370-390 2-22 (163)
391 PRK07276 DNA polymerase III su 92.5 0.58 1.3E-05 49.1 8.9 56 430-512 103-159 (290)
392 PRK04040 adenylate kinase; Pro 92.4 0.12 2.6E-06 50.8 3.6 25 368-392 3-27 (188)
393 cd02027 APSK Adenosine 5'-phos 92.4 0.087 1.9E-06 49.7 2.5 22 370-391 2-23 (149)
394 TIGR02788 VirB11 P-type DNA tr 92.3 0.17 3.6E-06 54.0 4.9 26 368-393 145-170 (308)
395 PRK06851 hypothetical protein; 92.2 0.092 2E-06 56.9 2.6 24 368-391 215-238 (367)
396 TIGR02782 TrbB_P P-type conjug 92.1 0.19 4.2E-06 53.2 4.9 25 368-392 133-157 (299)
397 PRK12339 2-phosphoglycerate ki 92.0 0.15 3.2E-06 50.6 3.7 28 368-395 4-31 (197)
398 PRK03846 adenylylsulfate kinas 92.0 0.14 3E-06 50.8 3.5 24 368-391 25-48 (198)
399 PRK05541 adenylylsulfate kinas 92.0 0.12 2.7E-06 50.0 3.1 25 368-392 8-32 (176)
400 PRK05480 uridine/cytidine kina 91.9 0.13 2.9E-06 51.4 3.4 24 368-391 7-30 (209)
401 COG4178 ABC-type uncharacteriz 91.9 0.12 2.5E-06 59.1 3.1 31 364-394 416-446 (604)
402 PF03193 DUF258: Protein of un 91.9 0.21 4.5E-06 47.6 4.4 23 368-390 36-58 (161)
403 TIGR00554 panK_bact pantothena 91.9 0.28 6.1E-06 51.6 5.8 25 368-392 63-87 (290)
404 PF08784 RPA_C: Replication pr 91.8 0.33 7.2E-06 42.5 5.4 52 663-717 48-99 (102)
405 cd02023 UMPK Uridine monophosp 91.8 0.12 2.7E-06 51.1 2.9 22 370-391 2-23 (198)
406 KOG0064 Peroxisomal long-chain 91.8 0.13 2.7E-06 57.0 3.1 29 365-393 506-534 (728)
407 PRK01184 hypothetical protein; 91.8 0.16 3.4E-06 49.7 3.6 24 369-393 3-26 (184)
408 COG4088 Predicted nucleotide k 91.8 0.1 2.2E-06 51.0 2.0 27 370-396 4-30 (261)
409 TIGR01043 ATP_syn_A_arch ATP s 91.7 6.7 0.00015 44.9 16.8 27 368-394 223-249 (578)
410 PF00437 T2SE: Type II/IV secr 91.7 0.17 3.7E-06 52.8 4.0 27 368-394 128-154 (270)
411 COG1485 Predicted ATPase [Gene 91.7 0.08 1.7E-06 56.0 1.4 25 369-393 67-91 (367)
412 KOG2228 Origin recognition com 91.6 0.84 1.8E-05 48.1 8.7 22 368-389 50-71 (408)
413 COG1117 PstB ABC-type phosphat 91.6 0.11 2.3E-06 51.3 2.1 23 368-390 34-56 (253)
414 PF00005 ABC_tran: ABC transpo 91.6 0.085 1.8E-06 48.7 1.4 25 368-392 12-36 (137)
415 PF13479 AAA_24: AAA domain 91.6 0.13 2.8E-06 51.7 2.8 26 368-397 4-29 (213)
416 PF01926 MMR_HSR1: 50S ribosom 91.6 0.13 2.8E-06 46.0 2.5 21 369-389 1-21 (116)
417 PRK09825 idnK D-gluconate kina 91.6 0.15 3.2E-06 49.7 3.1 26 368-393 4-29 (176)
418 TIGR03574 selen_PSTK L-seryl-t 91.5 0.12 2.6E-06 53.4 2.5 23 370-392 2-24 (249)
419 cd01124 KaiC KaiC is a circadi 91.5 0.13 2.9E-06 50.1 2.7 19 370-388 2-20 (187)
420 PRK13833 conjugal transfer pro 91.5 0.24 5.1E-06 52.9 4.8 24 368-391 145-168 (323)
421 PRK04182 cytidylate kinase; Pr 91.5 0.18 3.9E-06 48.8 3.7 28 369-396 2-29 (180)
422 cd00820 PEPCK_HprK Phosphoenol 91.5 0.16 3.4E-06 44.9 2.8 21 368-388 16-36 (107)
423 PF00392 GntR: Bacterial regul 91.3 1.3 2.9E-05 34.9 7.9 43 676-721 19-62 (64)
424 PF09339 HTH_IclR: IclR helix- 91.3 0.5 1.1E-05 35.7 5.1 47 667-716 5-51 (52)
425 PLN02165 adenylate isopentenyl 91.3 0.23 4.9E-06 53.0 4.3 29 368-396 44-72 (334)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.3 0.16 3.5E-06 51.1 3.1 25 368-392 31-55 (218)
427 TIGR02237 recomb_radB DNA repa 91.3 0.21 4.4E-06 49.9 3.9 22 368-389 13-34 (209)
428 TIGR02173 cyt_kin_arch cytidyl 91.2 0.2 4.3E-06 48.1 3.6 28 369-396 2-29 (171)
429 KOG1968 Replication factor C, 91.2 0.64 1.4E-05 55.9 8.4 102 370-483 360-468 (871)
430 COG3842 PotA ABC-type spermidi 91.2 0.14 3.1E-06 54.9 2.8 24 368-391 32-55 (352)
431 cd04177 RSR1 RSR1 subgroup. R 91.1 0.17 3.7E-06 48.4 3.0 23 368-390 2-24 (168)
432 PRK13541 cytochrome c biogenes 91.1 0.18 3.9E-06 49.8 3.2 25 368-392 27-51 (195)
433 cd03258 ABC_MetN_methionine_tr 91.1 0.17 3.8E-06 51.4 3.2 27 366-392 30-56 (233)
434 PRK05818 DNA polymerase III su 91.0 0.51 1.1E-05 48.5 6.4 53 432-511 89-142 (261)
435 cd03269 ABC_putative_ATPase Th 91.0 0.18 3.9E-06 50.4 3.2 24 368-391 27-50 (210)
436 cd04137 RheB Rheb (Ras Homolog 91.0 0.17 3.7E-06 48.9 2.9 22 368-389 2-23 (180)
437 cd03292 ABC_FtsE_transporter F 91.0 0.18 4E-06 50.5 3.2 25 368-392 28-52 (214)
438 cd03301 ABC_MalK_N The N-termi 90.9 0.19 4.1E-06 50.4 3.2 25 368-392 27-51 (213)
439 PRK13894 conjugal transfer ATP 90.9 0.31 6.6E-06 52.1 4.9 23 368-390 149-171 (319)
440 cd03216 ABC_Carb_Monos_I This 90.8 0.19 4.2E-06 48.1 3.1 92 366-457 25-127 (163)
441 cd03228 ABCC_MRP_Like The MRP 90.8 0.21 4.5E-06 48.3 3.3 28 366-393 27-54 (171)
442 PF00406 ADK: Adenylate kinase 90.8 0.14 3E-06 48.3 2.0 22 372-393 1-22 (151)
443 PRK05537 bifunctional sulfate 90.8 0.31 6.8E-06 56.3 5.2 52 332-393 367-418 (568)
444 PRK05800 cobU adenosylcobinami 90.8 0.31 6.6E-06 47.1 4.4 25 369-393 3-27 (170)
445 TIGR02315 ABC_phnC phosphonate 90.7 0.19 4.2E-06 51.4 3.1 25 368-392 29-53 (243)
446 cd03247 ABCC_cytochrome_bd The 90.7 0.21 4.5E-06 48.6 3.3 27 367-393 28-54 (178)
447 cd03264 ABC_drug_resistance_li 90.7 0.19 4.1E-06 50.3 3.0 24 369-392 27-50 (211)
448 TIGR03608 L_ocin_972_ABC putat 90.7 0.2 4.3E-06 49.9 3.1 25 368-392 25-49 (206)
449 PF00485 PRK: Phosphoribulokin 90.7 0.15 3.2E-06 50.4 2.2 24 370-393 2-25 (194)
450 PRK08356 hypothetical protein; 90.6 0.31 6.7E-06 48.2 4.4 22 368-389 6-27 (195)
451 PF10662 PduV-EutP: Ethanolami 90.6 0.18 3.8E-06 47.0 2.5 22 369-390 3-24 (143)
452 PRK00889 adenylylsulfate kinas 90.6 0.17 3.7E-06 49.0 2.5 25 368-392 5-29 (175)
453 COG4525 TauB ABC-type taurine 90.6 0.17 3.7E-06 49.1 2.3 27 368-394 32-58 (259)
454 cd03224 ABC_TM1139_LivF_branch 90.5 0.2 4.3E-06 50.5 3.0 27 366-392 25-51 (222)
455 cd02024 NRK1 Nicotinamide ribo 90.5 0.28 6E-06 48.2 3.8 23 370-392 2-24 (187)
456 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.4 0.22 4.7E-06 46.7 2.9 83 368-457 27-115 (144)
457 cd03263 ABC_subfamily_A The AB 90.4 0.22 4.7E-06 50.2 3.2 25 368-392 29-53 (220)
458 cd01858 NGP_1 NGP-1. Autoanti 90.4 0.45 9.7E-06 45.2 5.2 23 367-389 102-124 (157)
459 TIGR03499 FlhF flagellar biosy 90.4 0.59 1.3E-05 49.2 6.5 25 367-391 194-218 (282)
460 PRK14737 gmk guanylate kinase; 90.4 0.24 5.3E-06 48.6 3.4 26 368-393 5-30 (186)
461 PRK14738 gmk guanylate kinase; 90.3 0.21 4.6E-06 49.9 2.9 25 368-392 14-38 (206)
462 cd03266 ABC_NatA_sodium_export 90.3 0.22 4.8E-06 50.1 3.1 25 368-392 32-56 (218)
463 PRK08154 anaerobic benzoate ca 90.3 0.56 1.2E-05 50.1 6.3 32 365-396 131-162 (309)
464 TIGR01166 cbiO cobalt transpor 90.3 0.23 5E-06 48.8 3.1 25 368-392 19-43 (190)
465 cd04155 Arl3 Arl3 subfamily. 90.3 0.21 4.5E-06 47.9 2.8 24 367-390 14-37 (173)
466 cd03214 ABC_Iron-Siderophores_ 90.3 0.24 5.1E-06 48.3 3.2 28 366-393 24-51 (180)
467 PRK04220 2-phosphoglycerate ki 90.3 0.61 1.3E-05 49.1 6.3 27 368-394 93-119 (301)
468 smart00345 HTH_GNTR helix_turn 90.2 1.5 3.3E-05 33.6 7.2 40 678-720 17-57 (60)
469 PF13412 HTH_24: Winged helix- 90.2 1.3 2.8E-05 32.7 6.4 43 665-714 6-48 (48)
470 TIGR03410 urea_trans_UrtE urea 90.2 0.22 4.8E-06 50.6 3.1 26 367-392 26-51 (230)
471 TIGR02673 FtsE cell division A 90.2 0.23 5E-06 49.8 3.2 25 368-392 29-53 (214)
472 cd04119 RJL RJL (RabJ-Like) su 90.2 0.22 4.8E-06 47.1 2.9 23 368-390 1-23 (168)
473 cd03246 ABCC_Protease_Secretio 90.2 0.26 5.7E-06 47.6 3.5 26 368-393 29-54 (173)
474 PF03444 HrcA_DNA-bdg: Winged 90.2 0.75 1.6E-05 37.8 5.4 45 676-723 19-66 (78)
475 cd03230 ABC_DR_subfamily_A Thi 90.2 0.24 5.1E-06 48.0 3.1 26 368-393 27-52 (173)
476 PF09012 FeoC: FeoC like trans 90.2 0.21 4.6E-06 40.3 2.3 44 667-717 5-48 (69)
477 cd03226 ABC_cobalt_CbiO_domain 90.2 0.23 5.1E-06 49.4 3.1 25 368-392 27-51 (205)
478 PRK14722 flhF flagellar biosyn 90.2 0.77 1.7E-05 50.0 7.3 24 367-390 137-160 (374)
479 TIGR00017 cmk cytidylate kinas 90.2 0.3 6.6E-06 49.2 3.9 29 368-396 3-31 (217)
480 cd04124 RabL2 RabL2 subfamily. 90.2 0.23 4.9E-06 47.2 2.9 22 368-389 1-22 (161)
481 cd03262 ABC_HisP_GlnQ_permease 90.1 0.24 5.2E-06 49.6 3.2 25 368-392 27-51 (213)
482 smart00550 Zalpha Z-DNA-bindin 90.1 1.5 3.2E-05 35.3 7.2 48 664-717 8-56 (68)
483 cd03265 ABC_DrrA DrrA is the A 90.1 0.24 5.3E-06 49.9 3.2 26 367-392 26-51 (220)
484 PRK12338 hypothetical protein; 90.1 0.33 7.2E-06 51.5 4.3 29 368-396 5-33 (319)
485 PRK13540 cytochrome c biogenes 90.1 0.25 5.4E-06 49.0 3.2 25 368-392 28-52 (200)
486 cd03261 ABC_Org_Solvent_Resist 90.1 0.24 5.1E-06 50.5 3.2 25 368-392 27-51 (235)
487 TIGR00960 3a0501s02 Type II (G 90.0 0.24 5.3E-06 49.7 3.1 25 368-392 30-54 (216)
488 PRK13808 adenylate kinase; Pro 90.0 0.29 6.2E-06 52.3 3.8 28 369-396 2-29 (333)
489 TIGR00231 small_GTP small GTP- 90.0 0.24 5.2E-06 45.8 2.9 23 368-390 2-24 (161)
490 cd03229 ABC_Class3 This class 90.0 0.26 5.6E-06 47.9 3.2 26 368-393 27-52 (178)
491 cd01878 HflX HflX subfamily. 90.0 0.24 5.1E-06 49.2 3.0 25 366-390 40-64 (204)
492 PRK10584 putative ABC transpor 90.0 0.25 5.5E-06 50.0 3.2 25 368-392 37-61 (228)
493 cd03281 ABC_MSH5_euk MutS5 hom 90.0 0.6 1.3E-05 46.9 5.9 22 368-389 30-51 (213)
494 cd03256 ABC_PhnC_transporter A 89.9 0.25 5.4E-06 50.5 3.2 25 368-392 28-52 (241)
495 COG1124 DppF ABC-type dipeptid 89.9 0.27 6E-06 49.4 3.2 26 368-393 34-59 (252)
496 cd03293 ABC_NrtD_SsuB_transpor 89.9 0.25 5.3E-06 49.8 3.0 25 368-392 31-55 (220)
497 PF02421 FeoB_N: Ferrous iron 89.9 0.38 8.2E-06 45.7 4.1 24 368-391 1-24 (156)
498 cd03215 ABC_Carb_Monos_II This 89.9 0.25 5.5E-06 48.2 3.0 25 368-392 27-51 (182)
499 smart00175 RAB Rab subfamily o 89.9 0.23 5E-06 46.9 2.7 21 369-389 2-22 (164)
500 cd03254 ABCC_Glucan_exporter_l 89.8 0.26 5.6E-06 50.0 3.2 25 368-392 30-54 (229)
No 1
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=9.3e-135 Score=1051.56 Aligned_cols=717 Identities=58% Similarity=0.883 Sum_probs=657.6
Q ss_pred CCCCCCceeeecCCCCCCCccCCCcCCcccHHHHHHHHHHHHhccccCCCcchhHHHHhcC----CCEEEEecchhhccC
Q 004862 2 SGWDEGAVYYSDQAQFPDDAVGATADANHRRHTTLIKFKEFIRNFERDKNVFPYRESLIEN----PKFLLVHLEDLLAFD 77 (726)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Fl~~f~~~~~~~~Y~~~l~~~----~~~l~Vd~~dL~~f~ 77 (726)
+|||+|+|||++. + ++++... .-+.++++..|++|++.|+. ...|+|+++|++| ..+++|+++||.+||
T Consensus 1 ~~~D~~~i~~~d~-f-~~d~~~d----~~~~~~v~~~fkefir~f~~-~~~f~Yrd~L~~N~~~~~y~L~v~le~L~~fd 73 (729)
T KOG0481|consen 1 SGFDEPGIYYSDS-F-GGDGQAD----TGRKSQVKTKFKEFIRQFRT-GTDFKYRDQLKRNYNLGEYSLEVELEDLISFD 73 (729)
T ss_pred CCCCCCceEeecc-c-CCCCccc----cccHHHHHHHHHHHHHHhcc-ccccchHHHHHhcccccceEEEEEHHHhhccc
Confidence 6999999999973 2 2222222 12688999999999999984 4558999999988 457999999999999
Q ss_pred chHHHHHHhCHHHHHHHHHHHHHHHHHHhccccCCCCCCcceEEEEecCCCCcccccccCccCCCcEEEEEeEEEEeecc
Q 004862 78 ADLPSLLRSSPADFLPLFETAAAEVLASLKMKVDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAASRV 157 (726)
Q Consensus 78 ~~La~~l~~~P~~~l~~~~~a~~e~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~GiV~~~s~v 157 (726)
.+|++.|..+|.++||+|++|+.++..++..+....+....+|+|.+.....+.++|+|+++++.|||.|.|||+.+|.+
T Consensus 74 edl~~~L~~~P~~~lp~fEeAa~~Vad~i~~~~~~~E~~~~d~Qv~L~sda~p~~iR~l~s~~vsklVki~GIiiaAS~v 153 (729)
T KOG0481|consen 74 EDLADKLSKQPADHLPLFEEAAKEVADEITRPRPSGEEVLHDIQVLLTSDANPISIRQLKSDHVSKLVKISGIIIAASAV 153 (729)
T ss_pred hHHHHHHHhChHhHHHHHHHHHHHHHhhhcCCCcCCCccceeeEEEEecCCCcccHhHhhhHhhhhheeeccEEEEeeee
Confidence 99999999999999999999999999988765544445667899999999999999999999999999999999999999
Q ss_pred eeeEEEEEEEecCCCCeE-EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEecCCCceeeeeEEEeecCCCCCCCCC
Q 004862 158 KAKATYVHLSCKNCKSTL-DVPCRPGLGGAIVPRSCGHIPQAGEEPCPIDPWIIVPDKSQYVDQQTLKLQENPEDVPTGE 236 (726)
Q Consensus 158 ~~~~~~~~~~C~~C~~~~-~~~~~~~~~~~~~P~~C~~~~~~g~~~C~~~~~~~~~~~s~~~d~Q~I~iQE~~e~~~~g~ 236 (726)
+.+.+....+|..|.++. .+...++++.+..|..|.+.. .|+.+|+.+||.+.+++|+|+|+|.+||||.|+++|.|+
T Consensus 154 ~~kat~l~l~CrnC~~t~~~~~~~pgl~g~~lPR~C~~~~-~~k~~Cp~DPyii~pdks~~vD~QtLKLQE~pe~VP~GE 232 (729)
T KOG0481|consen 154 SAKATRLSLVCRNCRHTRPNVIMRPGLEGYALPRKCDTPQ-AGKPKCPLDPYIIMPDKSKCVDQQTLKLQELPEDVPVGE 232 (729)
T ss_pred eecceEEEEEeccccccccceecCCCccccccccccCCcc-cCCCCCCCCCEEEcccccceeehhheehhhCcccCCcCc
Confidence 999999999999999887 455667888899999998654 556779999999999999999999999999999999999
Q ss_pred CceEEEEEEecCccccccCCcEEEEEEEEEeeeCCCCCCCCCcceeEeeeEEEEEeeeeeccccc-cCCCCCCHHHHHHH
Q 004862 237 LPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQSANSPASHKGAVAVRQPYIRVVGLEETNEASS-RGAAAFTQEEIEKF 315 (726)
Q Consensus 237 ~Pr~i~v~l~~dLv~~~~pGd~V~V~GIl~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~~~~~~~~~~~ 315 (726)
+||++.++++++|++++.||.+|+|+|||.+.+......+.++..++...||+++||+...+... .....||++|.+.|
T Consensus 233 ~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~ss~~~~~~ft~eEEEeF 312 (729)
T KOG0481|consen 233 MPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGSSRSSATMFTPEEEEEF 312 (729)
T ss_pred CcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccCCccccCcccCChhHHHHH
Confidence 99999999999999999999999999999998654433334456789999999999997765422 23457999999999
Q ss_pred HHHhcCcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 316 KKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 316 ~~~~~~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
++++..|++|+.|.+||+|+|||++++|+|+.|.||||+.|.++||...|||+||||.|+|||+||+|++++.+.+|-++
T Consensus 313 k~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaV 392 (729)
T KOG0481|consen 313 KKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAV 392 (729)
T ss_pred HHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 396 YTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 396 ~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
|++|+|++++|||+++.+|+.+.+|.+++||+++|||||+||||||+|.++++.++||+||||+|+|+|+|++++||+||
T Consensus 393 YTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRt 472 (729)
T KOG0481|consen 393 YTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRT 472 (729)
T ss_pred EecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhccccc----ccccccCCHH
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVS----ADSKVSKEEN 551 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~----~~~~~~~~~~ 551 (726)
+|+||+||.+||||+.++..+|+.|.+.+|||||++|.+.|..+++.|..||+|++++|....+.. ......++.+
T Consensus 473 SVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~ 552 (729)
T KOG0481|consen 473 SVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIE 552 (729)
T ss_pred hhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHH
Confidence 999999999999999999999999999999999999999999999999999999999998643222 1245679999
Q ss_pred HHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHH
Q 004862 552 WLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEV 631 (726)
Q Consensus 552 ~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv 631 (726)
.|++||.|||.+|.|.||++|.+.|.++|+.+|+.......++++..++|+|+||||++||+++++|||+++..++++||
T Consensus 553 ~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV 632 (729)
T KOG0481|consen 553 KLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHV 632 (729)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHH
Confidence 99999999999999999999999999999999998887777778889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhcCccccc--cccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004862 632 NEAVRLFTVSTMDAARSGINQQV--NLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQ 709 (726)
Q Consensus 632 ~~ai~l~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~ 709 (726)
++|++||+.|+++.+.+|.+.+. ..+++..+.+++++..|+++++.+..+|+..|+++....|+++..+.++|..|.+
T Consensus 633 ~EA~RLF~vSTmdAa~~g~l~g~egf~s~e~~e~i~rie~qlkrr~~IG~~~se~~li~df~~~~y~e~~v~kal~~m~~ 712 (729)
T KOG0481|consen 633 EEALRLFQVSTMDAASQGTLAGVEGFTSPEDQEEIKRIEKQLKRRFAIGSQVSEHSLIRDFVRQGYSEHAVKKALQIMLR 712 (729)
T ss_pred HHHHHHHhHhhHHHHhcCchhcccccCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 99999999999999998876552 2567889999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCeEEEecC
Q 004862 710 RDEVEYKRERRVILRKV 726 (726)
Q Consensus 710 ~g~i~~~~~g~~~~~~~ 726 (726)
+|.|+....|+++.|.+
T Consensus 713 rg~iq~r~qrk~lyR~~ 729 (729)
T KOG0481|consen 713 RGEIQHRMQRKVLYRSG 729 (729)
T ss_pred hhHHHHHhcCceEEecC
Confidence 99999999999999975
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.8e-117 Score=985.60 Aligned_cols=659 Identities=42% Similarity=0.656 Sum_probs=578.7
Q ss_pred HHHHHHHHHhccccCCCcchhHHH--HhcC-CCEEEEecchhhccCchHHHHHHhCHHHHHHHHHHHHHHHHHHhccccC
Q 004862 35 TLIKFKEFIRNFERDKNVFPYRES--LIEN-PKFLLVHLEDLLAFDADLPSLLRSSPADFLPLFETAAAEVLASLKMKVD 111 (726)
Q Consensus 35 ~~~~f~~Fl~~f~~~~~~~~Y~~~--l~~~-~~~l~Vd~~dL~~f~~~La~~l~~~P~~~l~~~~~a~~e~~~~~~~~~~ 111 (726)
+.+.|+ |. |... ....|.++ +.+. ..++.|++.|+..|+++|+..|+++|.++++.|++|+.+++........
T Consensus 3 ~~~~~~--~~-~~~~-~~~~~~~~~~~~~~~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~~~~~ 78 (682)
T COG1241 3 IAELFR--LR-FKWE-DILEYAENIILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFPEVD 78 (682)
T ss_pred hhhhhh--hh-cccc-hHHHHHHHhhhhhccceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcCcccc
Confidence 456677 44 5532 24556664 3332 2389999999999999999999999999999999999999887654432
Q ss_pred CCCCCcceEEEEecCCCCcccccccCccCCCcEEEEEeEEEEeecceeeEEEEEEEecCCCCeEEEecCCCCCCCCCCCC
Q 004862 112 NEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAASRVKAKATYVHLSCKNCKSTLDVPCRPGLGGAIVPRS 191 (726)
Q Consensus 112 ~~~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~GiV~~~s~v~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~P~~ 191 (726)
.....++++|.+.+...++|+|++.|+||||+|+|+|+|+|.|+|++++++|.|.+||+.+.+.+... .+..|..
T Consensus 79 ---~~~~~~~~~~~~~~~~~~iR~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~~~~~~~--~~~~~~~ 153 (682)
T COG1241 79 ---RSLKKIHVRFKNLPNRLSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQSEF--RVEPPRE 153 (682)
T ss_pred ---ccccceEEEecCCcCCcChhhCchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCCCEEEEEeccc--cccCCcc
Confidence 22367999999999999999999999999999999999999999999999999999999998887654 3678888
Q ss_pred CCCCCCCCCCCC---CCCCeEEecCCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccccccCCcEEEEEEEEEee
Q 004862 192 CGHIPQAGEEPC---PIDPWIIVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIF 268 (726)
Q Consensus 192 C~~~~~~g~~~C---~~~~~~~~~~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V~GIl~~~ 268 (726)
|++ | ...+|.++.+.|.|+|||+|+|||.|+.+|+|++|++++|+|++|||+++.|||+|.||||++..
T Consensus 154 C~~--------~~~~~~~~~~~~~~~s~f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~ 225 (682)
T COG1241 154 CEN--------CGKFGKGPLKLVPRKSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIV 225 (682)
T ss_pred CCC--------ccccCCCceEEecCcceeeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecc
Confidence 998 5 34579999999999999999999999999999999999999999999999999999999999988
Q ss_pred eCCCCCCCCCcceeEeeeEEEEEeeeeeccccccCCCCCCHHHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHHHHH
Q 004862 269 QSANSPASHKGAVAVRQPYIRVVGLEETNEASSRGAAAFTQEEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSC 348 (726)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~aill 348 (726)
+.... +..+...++..|++++++++... .....+|++|.+.|++++++|++|+.|++|+||+|||++.+|+||+|
T Consensus 226 ~~~~~--~~~~~~~~~~~~~~a~~v~~~~~---~~~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilL 300 (682)
T COG1241 226 PSRSL--SGRRKGPVFEIYLEANSVEKLDK---REEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILL 300 (682)
T ss_pred ccccc--ccccCCceEEEEEEEEEEEeccc---hhhccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHH
Confidence 74221 11334568999999999987653 25667999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCcee
Q 004862 349 LLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMV 428 (726)
Q Consensus 349 ~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~ 428 (726)
+||||+.|..++|+++|||+||||+|+||||||+|++++++.+|+++|++|++++.+|||+++.+|+.+|+|.+++||++
T Consensus 301 qLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALV 380 (682)
T COG1241 301 QLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALV 380 (682)
T ss_pred HhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhccc
Q 004862 429 LADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 429 la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
+||+|||||||||+|+..++.+||+|||||+|+++|+|++++||+||+|+||+||.+|+|++.+++.+|++|+++|||||
T Consensus 381 lAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRF 460 (682)
T COG1241 381 LADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRF 460 (682)
T ss_pred EecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcccccc------cccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHH
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASADAVSA------DSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQ 582 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~------~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~ 582 (726)
||+|.+.|.++++.|..+|+|++..|....+... +....-+.++|++||.|||+++.|.++++|.+.|.+||++
T Consensus 461 DLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~ 540 (682)
T COG1241 461 DLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVE 540 (682)
T ss_pred CeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999975443211 0000116889999999999999999999999999999999
Q ss_pred HHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhh---cCccccc----c
Q 004862 583 IRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAAR---SGINQQV----N 655 (726)
Q Consensus 583 ~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~---~~~~~~~----~ 655 (726)
+|+.... .. ...++|+|+||||++||+|+|+|||++++.|+++|+.+|++|+..|+.+.+. +|..+.. +
T Consensus 541 ~Rk~~~~---~~-~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~v~~dp~~g~~d~~~~~~~ 616 (682)
T COG1241 541 MRKKSAL---VE-EKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDPEKGKIDIDIIEPG 616 (682)
T ss_pred hhhcccc---cc-ccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCccCCceehhhhccC
Confidence 9987532 11 3468999999999999999999999999999999999999999999987653 4554432 3
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEE
Q 004862 656 LTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVI 722 (726)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~ 722 (726)
.+...+..+..++..+++....... ...++++++. |+++..++++|++|.+.|.++.++.|.+.
T Consensus 617 ~~~~~~~~~~~~~~~i~e~~~~~~~-~~~~~~~~~~--g~~~~~~e~~l~~l~~~g~i~~~~~g~~~ 680 (682)
T COG1241 617 KSKSKRDKIEKVLDIIKELVERSED-PVEEIIEEAE--GISEKEVEEALEKLKKKGDILEPNPGYYL 680 (682)
T ss_pred CcchhhhhHHHHHHHHHHHhhcccc-hHHHHHHHHc--CCCHHHHHHHHHHHHhcCcEeccCCCeee
Confidence 4556777777778877765433323 5667777776 99999999999999999999999998864
No 3
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=4.7e-117 Score=943.68 Aligned_cols=601 Identities=34% Similarity=0.541 Sum_probs=538.1
Q ss_pred cccHHHHHHHHHHHHhccccCCCcchhHHHHhcC----CCEEEEecchhhc-cCchHHHHHHhCHHHHHHHHHHHHHHHH
Q 004862 29 NHRRHTTLIKFKEFIRNFERDKNVFPYRESLIEN----PKFLLVHLEDLLA-FDADLPSLLRSSPADFLPLFETAAAEVL 103 (726)
Q Consensus 29 ~~~~~~~~~~f~~Fl~~f~~~~~~~~Y~~~l~~~----~~~l~Vd~~dL~~-f~~~La~~l~~~P~~~l~~~~~a~~e~~ 103 (726)
+.+...+.+.|.+||+.|....++.+|...+... ..+|.||+.||.. |++.|+..|.++|++++|++..|+++++
T Consensus 19 d~~g~~~~e~~~~Fle~~~~~~~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~l 98 (764)
T KOG0480|consen 19 DTTGERVEEEFLQFLESFKVQAGEKKYLQSIELLDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKVL 98 (764)
T ss_pred cccccchHHHHHHHHHHhhccccchhhHHHHHhhccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3455678888999999999878888999887643 3689999999999 9999999999999999999999999998
Q ss_pred HHhccccCCCCCCcceEEEEecCCCCcccccccCccCCCcEEEEEeEEEEeecceeeEEEEEEEecCCCCeEEEecCCCC
Q 004862 104 ASLKMKVDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAASRVKAKATYVHLSCKNCKSTLDVPCRPGL 183 (726)
Q Consensus 104 ~~~~~~~~~~~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~GiV~~~s~v~~~~~~~~~~C~~C~~~~~~~~~~~~ 183 (726)
.+.... .....+.|+++|+|+|....+|+|+++.+|+||+++|+|+|+|+|+|.+++++|.|..||..+.....+
T Consensus 99 ~d~~~~---~~~~~~~~~v~f~nlp~~~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t~i~~v~q~-- 173 (764)
T KOG0480|consen 99 KDWSTN---SGALVKKIYVRFYNLPTRHKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFLCEKCGTVIRNVEQQ-- 173 (764)
T ss_pred Hccccc---ccccceeEEEEEeccccccccccccHhhhcceEEEEEEEEEeecccceeeeeEEEHhhCCCeeccchhc--
Confidence 873222 235678999999999999999999999999999999999999999999999999999999998654433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCeEEecCCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccccccCCcEEEEE
Q 004862 184 GGAIVPRSCGHIPQAGEEPCPI-DPWIIVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIM 262 (726)
Q Consensus 184 ~~~~~P~~C~~~~~~g~~~C~~-~~~~~~~~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V~ 262 (726)
.+|+.|++|++.. |.+ ..|.++.+.|.|.|||+|+|||+.+++|.|.+||+++|+|.+|||++|+|||+|++|
T Consensus 174 fkYt~Pt~C~np~------C~nrr~f~l~~~~s~f~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~T 247 (764)
T KOG0480|consen 174 FKYTEPTKCPNPV------CSNRRSFTLDRSSSRFLDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDIT 247 (764)
T ss_pred CccCCCccCCCcc------ccCCceeeeecccceeeeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEE
Confidence 3799999999965 876 679999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCCC----C----CCCCCcceeEeeeEEEEEeeeeecccc------------------ccCCCCCCHHHHHHHH
Q 004862 263 GIYSIFQSAN----S----PASHKGAVAVRQPYIRVVGLEETNEAS------------------SRGAAAFTQEEIEKFK 316 (726)
Q Consensus 263 GIl~~~~~~~----~----~~~~~~~~~~~~~~i~~~~i~~~~~~~------------------~~~~~~~~~~~~~~~~ 316 (726)
||+.+.++-. . ...+.|.....-.++++++|+...-.. ..-...+|.+|+..+.
T Consensus 248 GiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~ 327 (764)
T KOG0480|consen 248 GILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIR 327 (764)
T ss_pred EEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcccccccchhhhHHHhhhccHHHHHHHH
Confidence 9999888511 0 011112233667788999986432110 0012347889999999
Q ss_pred HHhcCcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 317 KFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 317 ~~~~~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+++.++++|..|++|++|.||||+.+|+||+|+||||+.|....|+.+|||+|||++||||||||+++++++..+||++|
T Consensus 328 em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY 407 (764)
T KOG0480|consen 328 EMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY 407 (764)
T ss_pred HHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 397 TSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 397 ~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
++|+.++.+|||+++++|+.+++|.+++||+++||+|||||||||+|+..+|.+||||||||+|+|+|+|..++||+|++
T Consensus 408 tsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 408 TSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred ecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHH
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRY 556 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~y 556 (726)
|||||||..|+|+..+++.+|++++++++|||||+|.+.|.+++..|..|++||++.|..-..... ....++.+.+++|
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~-~~~~~~~e~vrkY 566 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATE-RVCVYTLEQVRKY 566 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccccc-ccccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876433211 1147999999999
Q ss_pred HHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 557 IQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 557 i~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
|.||| ++.|.++.+|.+.|.++|..||...... ....+|++|+||||++|||++|+||+++++.|+++|+++|++
T Consensus 567 i~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~----~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 567 IRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQG----NNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHH-hcCccccHHHHHHHHHHHHHHHHhhccc----cCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 99999 5999999999999999999999887432 125689999999999999999999999999999999999999
Q ss_pred HHhhhhhhhh
Q 004862 637 LFTVSTMDAA 646 (726)
Q Consensus 637 l~~~s~~~~~ 646 (726)
|+..|+....
T Consensus 642 Llk~Siv~ve 651 (764)
T KOG0480|consen 642 LLKKSIVRVE 651 (764)
T ss_pred HHHhhheeec
Confidence 9999987543
No 4
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=1.1e-112 Score=970.72 Aligned_cols=681 Identities=27% Similarity=0.428 Sum_probs=578.1
Q ss_pred ccHHHHHHHHHHHHhccccCCC---------------cchhHHHHh----cC----------CCEEEEecchhhccCchH
Q 004862 30 HRRHTTLIKFKEFIRNFERDKN---------------VFPYRESLI----EN----------PKFLLVHLEDLLAFDADL 80 (726)
Q Consensus 30 ~~~~~~~~~f~~Fl~~f~~~~~---------------~~~Y~~~l~----~~----------~~~l~Vd~~dL~~f~~~L 80 (726)
...++++++|-+||++|.+-.+ ..+|..+|. ++ ..+|.||++||..|++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd~~L 162 (915)
T PTZ00111 83 NRLEELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFDKVL 162 (915)
T ss_pred hHHHHHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhhHHH
Confidence 4567999999999999854211 234655543 22 247999999999999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHhccccCCC---CCCcceEEEEecCCCCcccccccCccCCCcEEEEEeEEEEeecc
Q 004862 81 PSLLRSSPADFLPLFETAAAEVLASLKMKVDNE---EPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAASRV 157 (726)
Q Consensus 81 a~~l~~~P~~~l~~~~~a~~e~~~~~~~~~~~~---~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~GiV~~~s~v 157 (726)
+++|+++|.+++++|++|+.+++..+....... ......++||++|.+....+|+|++.++||||+|+|+|+|+|.|
T Consensus 163 ~~~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~vr~~n~~~~~~iR~L~s~~i~kLV~v~GiV~r~S~v 242 (915)
T PTZ00111 163 YKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWI 242 (915)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHhhcccccchhccccceEEEEEeCCCCCCCcccCCHhhCCCeEEEEEEEEEccCc
Confidence 999999999999999999999876543321110 11233589999999999999999999999999999999999999
Q ss_pred eeeEEEEEEEecC-----------CCCeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCC-CCeEEecCCCceeeeeEEEe
Q 004862 158 KAKATYVHLSCKN-----------CKSTLDVPCRPGLGGAIVPRSCGHIPQAGEEPCPI-DPWIIVPDKSQYVDQQTLKL 225 (726)
Q Consensus 158 ~~~~~~~~~~C~~-----------C~~~~~~~~~~~~~~~~~P~~C~~~~~~g~~~C~~-~~~~~~~~~s~~~d~Q~I~i 225 (726)
+|+++.++|.|.. |++.....+..+ .+..|..|+. |++ ++|.++++.|.|+|||+|+|
T Consensus 243 ~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~~g--~~~~P~~C~~--------C~~~~~f~l~~~~s~f~D~Q~Ikl 312 (915)
T PTZ00111 243 VPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVIQG--EVNEPLLCNE--------CNSKYTFELNHNMCVYSTKKIVKL 312 (915)
T ss_pred chhhEEEEEECCCCCcccCCccccCCccccccccCC--cccCCCCCCC--------CCCCCCeEEccCccEEEeeeEEEE
Confidence 9999999999986 776655444433 5788999986 875 57999999999999999999
Q ss_pred ecCCCCCCCCCCc--------------------eEEEEEEecCccccccCCcEEEEEEEEEeeeCCCCCCCCCcceeEee
Q 004862 226 QENPEDVPTGELP--------------------RNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQSANSPASHKGAVAVRQ 285 (726)
Q Consensus 226 QE~~e~~~~g~~P--------------------r~i~v~l~~dLv~~~~pGd~V~V~GIl~~~~~~~~~~~~~~~~~~~~ 285 (726)
||.|+++|.|++| |+++|+|++||||+|+|||+|+||||+++.+... +...++...++.
T Consensus 313 QE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~-~~~~~~~~~~~~ 391 (915)
T PTZ00111 313 LQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIRT-STTRRTLKSLYT 391 (915)
T ss_pred eeCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEeccccc-cccccccccccc
Confidence 9999999999999 9999999999999999999999999999876432 112223456789
Q ss_pred eEEEEEeeeeecccc----------ccCCCCCCHHHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCc
Q 004862 286 PYIRVVGLEETNEAS----------SRGAAAFTQEEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSR 355 (726)
Q Consensus 286 ~~i~~~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~ 355 (726)
+|+.+++|+...... ......+|++|++.|++++++|++|+.|++||||.|+|++.+|+||+|+|+||+.
T Consensus 392 ~yl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~ 471 (915)
T PTZ00111 392 YFVNVIHVKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNK 471 (915)
T ss_pred eEEEEEEEEEeccccccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCc
Confidence 999999998643110 0123469999999999999999999999999999999999999999999999987
Q ss_pred cc-----CCCC----ccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee-ecCCCchhhhccC
Q 004862 356 KN-----LPDG----VKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI-RDGSSREFYLEGG 425 (726)
Q Consensus 356 ~~-----~~~g----~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~-~~~~~~~~~~~~G 425 (726)
+. .++| .++||++||||+|+||||||++|+++|+++|+..|++|.+++.+|+++... ++..+|+|.+++|
T Consensus 472 k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~G 551 (915)
T PTZ00111 472 NSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPG 551 (915)
T ss_pred cccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCC
Confidence 63 3445 789999999999999999999999999999999999999999999998876 4455789999999
Q ss_pred ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh
Q 004862 426 AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL 505 (726)
Q Consensus 426 ~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll 505 (726)
++++|++|+||||||++|++..|.+|+++||+|+++++++|+..+++++++||||+||.+|+|++.+++.+++.|+++||
T Consensus 552 aLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 552 AVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred cEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCeeeEeccCCChhhhHHHHHHHHHHhhhccccc-----------------------ccccccCCHHHHHHHHHHhHc
Q 004862 506 SRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVS-----------------------ADSKVSKEENWLKRYIQYCRL 562 (726)
Q Consensus 506 ~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~-----------------------~~~~~~~~~~~L~~yi~~a~~ 562 (726)
|||||+|.+.|.+++++|..||.||++.|....... ......++.++|++||.|||+
T Consensus 632 SRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~ 711 (915)
T PTZ00111 632 TRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKL 711 (915)
T ss_pred hhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999998763211000 001134789999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhhh--------hc---------ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCc
Q 004862 563 ECHPRLSESASAKLRDQYVQIRKDMRRQ--------AN---------ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHV 625 (726)
Q Consensus 563 ~~~p~ls~ea~~~l~~~y~~~R~~~~~~--------~~---------~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~ 625 (726)
+++|.|+++|.+.|.++|++||+..... .. .......+|+|+||||+|||+|+|+|||+++++
T Consensus 712 ~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~ 791 (915)
T PTZ00111 712 HCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTV 791 (915)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCc
Confidence 9999999999999999999999752110 00 011234689999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhhhhhhh---hcCcccc----ccccHHHHHHHHHHHHHHHHhcCC------CCCCCHHHHHHHH--
Q 004862 626 ATENEVNEAVRLFTVSTMDAA---RSGINQQ----VNLTAEMAHEIKQAETQIKRRIPI------GNQISERRLIDDL-- 690 (726)
Q Consensus 626 V~~~Dv~~ai~l~~~s~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~-- 690 (726)
|+++||.+|++|+..|+.+.+ .+|.+|. .+.+.++++.+..+++.|++.... ...+++++|++.+
T Consensus 792 Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 871 (915)
T PTZ00111 792 VTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQLNQMYEQVLSVLTRSSNQDSNKSLDLNEVLSLCHK 871 (915)
T ss_pred ccHHHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHHHHHHHHHHHHHHHHHHHhhhccccCCceeHHHHHHHHHh
Confidence 999999999999999998876 4677665 255677788778888777755421 2468999999887
Q ss_pred -------HHcCCCHHHHHHHHHHHHHCCeEEEecCCeE
Q 004862 691 -------TRMGMNESIIRRALIIMHQRDEVEYKRERRV 721 (726)
Q Consensus 691 -------~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~ 721 (726)
.+.|+++..++++|++|.+.|.|++++.|..
T Consensus 872 ~~~~~~~~~~~i~~~~~~~~l~~L~~~g~i~~~~~g~y 909 (915)
T PTZ00111 872 TFKDNRDHKDGEIYKLISEVLNKMVQEGTAVRENNSYY 909 (915)
T ss_pred hccccchhccCCCHHHHHHHHHHHHhCCeEeeeCCCch
Confidence 4579999999999999999999999999865
No 5
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=6.9e-113 Score=887.27 Aligned_cols=666 Identities=32% Similarity=0.508 Sum_probs=573.0
Q ss_pred cHHHHHHHHHHHHhccccCCCcchhHHHHhcCC----CEEEEecchhhccCc--hHHHHHHhCHHHHHHHHHHHHHHHHH
Q 004862 31 RRHTTLIKFKEFIRNFERDKNVFPYRESLIENP----KFLLVHLEDLLAFDA--DLPSLLRSSPADFLPLFETAAAEVLA 104 (726)
Q Consensus 31 ~~~~~~~~f~~Fl~~f~~~~~~~~Y~~~l~~~~----~~l~Vd~~dL~~f~~--~La~~l~~~P~~~l~~~~~a~~e~~~ 104 (726)
+...-+++.+.||..|.+.+..-+|+++|++.. ..+.||++||.+|+. +|...|..|..++..+|..|+.+++.
T Consensus 9 D~~~dk~~~~~fl~e~~e~~~~~kY~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp 88 (721)
T KOG0482|consen 9 DYAADKNKIKKFLDEFYEDNELGKYMNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLP 88 (721)
T ss_pred hhhhhhHHHHHHHHhhhccCchhHHHHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334456677888888875444458999998753 479999999999984 79999999999999999999999875
Q ss_pred HhccccC-C------------------CC-----------CCcceEEEEec--CCCCcccccccCccCCCcEEEEEeEEE
Q 004862 105 SLKMKVD-N------------------EE-----------PKTEEVQILLT--SKEDSMSMRSIGAQFISKLVKISGITI 152 (726)
Q Consensus 105 ~~~~~~~-~------------------~~-----------~~~~~i~v~~~--~~~~~~~ir~l~s~~igkLV~v~GiV~ 152 (726)
....... . .. .....+.+-|. ...++..+|+++++|||+||+|+|+|+
T Consensus 89 ~~~~~~~~~~d~lDv~~~qR~~~~~~~~p~~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~iG~LvtvrGIVT 168 (721)
T KOG0482|consen 89 EPTGEIPYGDDVLDVYMEQRLMRNETRDPELEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADHIGSLVTVRGIVT 168 (721)
T ss_pred CcccccccCccHHHHHHHHHHHhccccCccccchhhcCCHHHhhhheeeecccccCCccchhhhhhhhccceEEEEEEEE
Confidence 4331110 0 00 01123344443 335678999999999999999999999
Q ss_pred EeecceeeEEEEEEEecCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCCCCC----CCCeEEecCCCceeeeeEEEeecC
Q 004862 153 AASRVKAKATYVHLSCKNCKSTLDVPCRPGLGGAIVPRSCGHIPQAGEEPCP----IDPWIIVPDKSQYVDQQTLKLQEN 228 (726)
Q Consensus 153 ~~s~v~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~P~~C~~~~~~g~~~C~----~~~~~~~~~~s~~~d~Q~I~iQE~ 228 (726)
|+|+|||.+.+++|.|..||.++++++.+. .|.++..|++.. |. .+.+.+....|+|+.+|++|+||.
T Consensus 169 R~S~VKP~m~VatYtCd~CGaE~yQeV~s~--~F~pl~~CpS~e------C~~n~~~G~L~lqtRgSKFikfQe~kmQEl 240 (721)
T KOG0482|consen 169 RVSDVKPSMVVATYTCDQCGAETYQEVNSR--TFTPLSECPSEE------CRTNKAGGRLYLQTRGSKFIKFQEVKMQEL 240 (721)
T ss_pred eccccccceEEEEEecccccHhhhccccCc--cccchhhCChHH------hhhcccCCeEEEEecccccchhhhhhHHHH
Confidence 999999999999999999999999998764 477778899855 85 246888899999999999999999
Q ss_pred CCCCCCCCCceEEEEEEecCccccccCCcEEEEEEEEEeeeCCCCCCCCCcceeEeeeEEEEEeeeeeccccccCCCCCC
Q 004862 229 PEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQSANSPASHKGAVAVRQPYIRVVGLEETNEASSRGAAAFT 308 (726)
Q Consensus 229 ~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V~GIl~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 308 (726)
.+++|.|.+||+++|+++++++.+|+|||.|.|+||+.+.+..++.....| .+.++||++..|...++. ..+.+++
T Consensus 241 s~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aG--LladtYLeAh~v~~~nk~--~~~~~~~ 316 (721)
T KOG0482|consen 241 SDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAG--LLADTYLEAHRVVQINKK--YDNIEKT 316 (721)
T ss_pred hccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhh--hHHHHHHHHhhhhhhccc--ccccccc
Confidence 999999999999999999999999999999999999998877664322223 356899999877554432 3344444
Q ss_pred HHHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHH
Q 004862 309 QEEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~ 388 (726)
.+...+..++....++|++|+.||||+||||+++|||+||.|+||+.+.+.+|+++||++||+|+|+||++||+|+++|.
T Consensus 317 ~~~~~~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~ 396 (721)
T KOG0482|consen 317 GELEPEELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYIS 396 (721)
T ss_pred ccccHHHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHH
Confidence 44445556666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceE
Q 004862 389 KTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGIT 468 (726)
Q Consensus 389 ~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~ 468 (726)
+++||++|++|+|+|.+|||+++.+|+.+++..+++|||++||+|||||||||+|...++.++||+||||+|+|+|+|+.
T Consensus 397 rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~ 476 (721)
T KOG0482|consen 397 RLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGIN 476 (721)
T ss_pred hcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccC
Q 004862 469 TVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSK 548 (726)
Q Consensus 469 ~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 548 (726)
++||+|++|+||+||.+|+|++..++.+|++||++|||||||++.+.|.|+++.|..+|+||..+|+...... ....++
T Consensus 477 TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~-~~fepl 555 (721)
T KOG0482|consen 477 TTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPP-LDFEPL 555 (721)
T ss_pred cchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCC-ccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876544 335789
Q ss_pred CHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccH
Q 004862 549 EENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATE 628 (726)
Q Consensus 549 ~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~ 628 (726)
+.+.+|.||.+||+ ..|.++++..++|...|+++|+..... ......|+|.|.+++|+|.|+|+|++++.|.+
T Consensus 556 ~~~~mR~yI~~ak~-~~P~vp~~l~dyi~~AYv~~Rrea~~~------~~~t~ttpRtLL~IlRls~AlarLRls~~V~~ 628 (721)
T KOG0482|consen 556 DPNLMRRYISLAKR-KNPVVPEALADYITGAYVELRREARSS------KDFTYTTPRTLLGILRLSTALARLRLSDSVEE 628 (721)
T ss_pred CHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhcc------CCCcccCHHHHHHHHHHHHHHHHhhhccccch
Confidence 99999999999998 799999999999999999999987532 23456899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhc-CccccccccHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 004862 629 NEVNEAVRLFTVSTMDAARS-GINQQVNLTAEMAHEIKQAETQIKRRIPIG--NQISERRLIDDLTRMGMNESIIRRALI 705 (726)
Q Consensus 629 ~Dv~~ai~l~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~~~~~l~ 705 (726)
+||.||++|++.|....... ++ .........++.++++..+.+ ..+++..+.+.....|+++.++.++|.
T Consensus 629 ~DV~EALRLme~sK~sL~~~~~~-------~~~~~~~~~if~iirel~~e~g~~~v~~s~~~~r~~~kGfs~~ql~~~i~ 701 (721)
T KOG0482|consen 629 DDVNEALRLMEMSKDSLYQDDGQ-------KEDTSATDAIFAIIRELAGEGGKRCVKLSNAEQRCVRKGFSEAQLKKCID 701 (721)
T ss_pred hhHHHHHHHHHhhhccccccccc-------ccccchHHHHHHHHHHHHhhcCCceeeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999886543322 11 111122566778888876532 368999999999999999999999999
Q ss_pred HHHHCCeEEEecCCeEEE
Q 004862 706 IMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 706 ~l~~~g~i~~~~~g~~~~ 723 (726)
+|..-|.+...-.|..|+
T Consensus 702 ey~~lnVw~~~~~~~~I~ 719 (721)
T KOG0482|consen 702 EYAELNVWQVNNERTTIT 719 (721)
T ss_pred HHHhcCeEEEecCceeEe
Confidence 999999999887777775
No 6
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=6.4e-111 Score=903.16 Aligned_cols=655 Identities=35% Similarity=0.556 Sum_probs=574.0
Q ss_pred CcccHHHHHHHHHHHHhccccCC-CcchhHHHHhcC----CCEEEEecchhhccCchHHHHHHhCHHHHHHHHHHHHHHH
Q 004862 28 ANHRRHTTLIKFKEFIRNFERDK-NVFPYRESLIEN----PKFLLVHLEDLLAFDADLPSLLRSSPADFLPLFETAAAEV 102 (726)
Q Consensus 28 ~~~~~~~~~~~f~~Fl~~f~~~~-~~~~Y~~~l~~~----~~~l~Vd~~dL~~f~~~La~~l~~~P~~~l~~~~~a~~e~ 102 (726)
..+...++.+.|+.||.+|+-.+ ...+|++.+.+. ...+.+|..||..|+..|+..+..+|.++++.|+.+++++
T Consensus 126 t~v~iqe~~~~F~~fl~rf~~~d~~~~~yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~ 205 (804)
T KOG0478|consen 126 TNVNIQECPENFDDFLRRFRGIDPLCPYYIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEI 205 (804)
T ss_pred eEEEHHhhhhHHHHHHHhcCCCCccchHHHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHH
Confidence 57889999999999999996332 345699888764 3469999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCcceEEEEecCCCCcccccccCccCCCcEEEEEeEEEEeecceeeEEEEEEEecCCCCeEEEecCCC
Q 004862 103 LASLKMKVDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAASRVKAKATYVHLSCKNCKSTLDVPCRPG 182 (726)
Q Consensus 103 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~GiV~~~s~v~~~~~~~~~~C~~C~~~~~~~~~~~ 182 (726)
+.+.+.. ......++||.+|..+..++|+|++++|+|||+|+|+|+|+|++.|.+++++|+|..|++...+.+..+
T Consensus 206 ~~e~~~~----~~~~~~i~vRPfn~~~~~smr~lNp~dIDkLisI~GmViRss~vipem~~afFrC~vC~~~~~ve~drg 281 (804)
T KOG0478|consen 206 VLERYVL----EILEKSIKVRPFNAGKTFSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSVCGHEIAVESDRG 281 (804)
T ss_pred HHhhccc----cchhceeEeeccCcccccccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhhcCceEEEEeecC
Confidence 9887633 234678999999999999999999999999999999999999999999999999999999999888755
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCeEEecCCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccccccCCcEEEE
Q 004862 183 LGGAIVPRSCGHIPQAGEEPCP-IDPWIIVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTI 261 (726)
Q Consensus 183 ~~~~~~P~~C~~~~~~g~~~C~-~~~~~~~~~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V 261 (726)
.+..|..|.. |. ...|.+++++|.|.|.|.||+||.|+.+|.|++|+++.|++++||||+|+|||+|+|
T Consensus 282 --~i~eP~~C~~--------C~~~~~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~V 351 (804)
T KOG0478|consen 282 --RIKEPMLCKE--------CGTTNSFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEV 351 (804)
T ss_pred --ccCCCccccc--------ccCcccceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhhccCCCCeEEE
Confidence 5789999985 75 356999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeCCCCCCCCCcceeEeeeEEEEEeeeeecccc------ccCCCCCCHHHHHHHHHHhcCcchHHHHHHhhcCC
Q 004862 262 MGIYSIFQSANSPASHKGAVAVRQPYIRVVGLEETNEAS------SRGAAAFTQEEIEKFKKFASQPDAYKTVCSKIAPS 335 (726)
Q Consensus 262 ~GIl~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~ 335 (726)
||||+..+... +...+...+.|++||+++++.+.+... ...+..++.++++.|.++++.|++|+.|++||||+
T Consensus 352 TGi~ra~p~r~-np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~~~~~~~e~i~elskrpdiy~lLa~SiAPs 430 (804)
T KOG0478|consen 352 TGILRATPVRV-NPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEVRRIEDLEKIQELSKRPDIYELLARSIAPS 430 (804)
T ss_pred EEEEEeEEecc-CcchhhHHHHHHHHhHhhhhhhhhhhhccccccccccccccHHHHHHHHHHhcCccHHHHHHHhhchh
Confidence 99999988653 122223456899999999997654310 01123456677999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecC
Q 004862 336 IFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDG 415 (726)
Q Consensus 336 I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~ 415 (726)
|||+|++|+|+||+||||+.++...+.++||++|||||||||||||+|++++++++||++|++|++++++|||+.+.+|+
T Consensus 431 Iye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~ 510 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDP 510 (804)
T ss_pred hhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecC
Confidence 99999999999999999999988887799999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchh
Q 004862 416 SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQ 495 (726)
Q Consensus 416 ~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~ 495 (726)
.+++|.++.|+++++|+|+|||||||||+...|+.|||+||||+++|+|||+.++||+|++|||++||..++|++.+++.
T Consensus 511 dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~ 590 (804)
T KOG0478|consen 511 DTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSII 590 (804)
T ss_pred ccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHH
Q 004862 496 DNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAK 575 (726)
Q Consensus 496 ~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~ 575 (726)
+|++++++|||||||+|.+.|.+|+-.|+.|+.|+...|..... ......++..+|+.||.||+++++|.+++||.+.
T Consensus 591 eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~--~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~ 668 (804)
T KOG0478|consen 591 ENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGE--KQGSEAIDMNLLRDYIRYARKNIHPALSPEASQA 668 (804)
T ss_pred hccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccc--cchhHHHhHHHHHHHHHHHhccCCccccHHHHHH
Confidence 99999999999999999999999999999999999999876442 2233678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhh---hcCccc
Q 004862 576 LRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAA---RSGINQ 652 (726)
Q Consensus 576 l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~---~~~~~~ 652 (726)
+..+|+.+|+..... ..+..++|||++|+|+++|||++++++.|...||++|++|..+.+.+.+ .+|..+
T Consensus 669 l~~ayvd~rk~~~~~-------~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~aL~~~a~d~~tg~vd 741 (804)
T KOG0478|consen 669 LIQAYVDMRKIGEGA-------GQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREALKQSATDPATGKVD 741 (804)
T ss_pred HHHHhhhhhhhcccc-------cccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHhcccCCCCCCCcee
Confidence 999999999886542 2366799999999999999999999999999999999999998877654 234443
Q ss_pred c----ccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecC
Q 004862 653 Q----VNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRE 718 (726)
Q Consensus 653 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~ 718 (726)
. .+.+...++..+....++...+ .+. .+.++....+..+++.|.+.|.+...+.
T Consensus 742 ~~~l~tg~s~~~~~~~~~~~~ai~~~l-----------~~~-~~~~~~~~~~~~al~~l~~~~~~~~s~~ 799 (804)
T KOG0478|consen 742 MDILATGNSVVSRKKVEILGGAILKML-----------KDE-SQKGIEEEMFLEALEELQKEGKIIVSGK 799 (804)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHh-----------HHH-HHHHHHHHHHHHHHHHHhhcCceeeccc
Confidence 2 1223333333343444444331 233 4567788899999999999999887654
No 7
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-105 Score=846.49 Aligned_cols=669 Identities=33% Similarity=0.505 Sum_probs=577.4
Q ss_pred ccHHHHHHHHHHHHhccccCCCcchhHHHHhcC----CCEEEEecchhhccCchHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 004862 30 HRRHTTLIKFKEFIRNFERDKNVFPYRESLIEN----PKFLLVHLEDLLAFDADLPSLLRSSPADFLPLFETAAAEVLAS 105 (726)
Q Consensus 30 ~~~~~~~~~f~~Fl~~f~~~~~~~~Y~~~l~~~----~~~l~Vd~~dL~~f~~~La~~l~~~P~~~l~~~~~a~~e~~~~ 105 (726)
..+.++..+|++||..|.++.+..+|.+.|.+. ..++.|++.||..-.+.||.+|-+.|.+++.+|++++.+++..
T Consensus 156 ~~r~~i~~~fk~fl~~y~d~~~~~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~~v~~ 235 (854)
T KOG0477|consen 156 GVRREIARRFKNFLREYVDENGHNVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALEVVLL 235 (854)
T ss_pred chhhHHHHHHHHHHHHHhcccccchHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999888888899988864 4579999999999999999999999999999999999999998
Q ss_pred hccccCCCCCCcceEEEEecCCCCcccccccCccCCCcEEEEEeEEEEeecceeeEEEEEEEecCCCCeEEEecCCCCCC
Q 004862 106 LKMKVDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAASRVKAKATYVHLSCKNCKSTLDVPCRPGLGG 185 (726)
Q Consensus 106 ~~~~~~~~~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~GiV~~~s~v~~~~~~~~~~C~~C~~~~~~~~~~~~~~ 185 (726)
.++.+. -...+|+||+.++|....+|.|+..|.|+||.+.|+|++.|.|.|.+....|.|.+|+.....++.+. ..
T Consensus 236 ~~p~ye---ri~~~ihvris~lP~~~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vlgPF~qs~-n~ 311 (854)
T KOG0477|consen 236 HYPNYE---RIHNEIHVRISDLPVCESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVLGPFVQSS-NS 311 (854)
T ss_pred hCCChh---hcccceeeeeecCCccccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCccCceeecc-Cc
Confidence 887753 34568999999999999999999999999999999999999999999999999999997776555432 34
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCeEEecCCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccccccCCcEEEEEEE
Q 004862 186 AIVPRSCGHIPQAGEEPCPI-DPWIIVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGI 264 (726)
Q Consensus 186 ~~~P~~C~~~~~~g~~~C~~-~~~~~~~~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V~GI 264 (726)
...|..|+. |.+ +||.++.+...|.+||+|+|||.|..+|.|.+||+.+|+|..||||.|+|||.|.||||
T Consensus 312 evkp~~C~~--------cqSkGpf~vn~e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGI 383 (854)
T KOG0477|consen 312 EVKPGSCPE--------CQSKGPFEVNVEETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGI 383 (854)
T ss_pred eeCCCCCcc--------ccCCCCCccchhhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeee
Confidence 578999998 654 78999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCCCCCcceeEeeeEEEEEeeeeeccccccCCCCCCHHHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHH
Q 004862 265 YSIFQSANSPASHKGAVAVRQPYIRVVGLEETNEASSRGAAAFTQEEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKK 344 (726)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~ 344 (726)
|...++. +.+.++....+.+.|.+++|.+... .....++|.+|.+.|.+++++|.+-.++..||||+||||+.+|.
T Consensus 384 y~nn~d~--sLN~kngFpvfatvi~ANhV~~k~~--~~~~~~ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~ 459 (854)
T KOG0477|consen 384 YTNNFDG--SLNTKNGFPVFATVIEANHVVKKDG--KFDVDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKR 459 (854)
T ss_pred ecccccc--cccccCCccccceeheehhhhhhcc--ccchhHHhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHH
Confidence 9866543 3444555577899999999975532 24456789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhcc
Q 004862 345 AVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEG 424 (726)
Q Consensus 345 aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~ 424 (726)
|+.|+|+||++++...++++||++||||+|+|||||||+++++++.++|+++++|.|++++|||+++.++|.+++|.+++
T Consensus 460 AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa 539 (854)
T KOG0477|consen 460 AVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA 539 (854)
T ss_pred HHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhh
Q 004862 425 GAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTI 504 (726)
Q Consensus 425 G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~L 504 (726)
|||++||+|||||||||+|+..++..+|+|||||.|+|+|+|+.++|+++|+||||+||..|||++..++.+|..+..++
T Consensus 540 GALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePI 619 (854)
T KOG0477|consen 540 GALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPI 619 (854)
T ss_pred CeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCeeeEeccCCChhhhHHHHHHHHHHhhhccccccc-----------ccccCCHHHHHHHHHHhHccCCCCCCHHHH
Q 004862 505 LSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSAD-----------SKVSKEENWLKRYIQYCRLECHPRLSESAS 573 (726)
Q Consensus 505 l~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~-----------~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~ 573 (726)
|||||+.+++.|.-+...|+.+|+.++..|....+..+. ...+++.+.|++||.||+.++.|.|..--.
T Consensus 620 lSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~ 699 (854)
T KOG0477|consen 620 LSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDM 699 (854)
T ss_pred hhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccH
Confidence 999999999999999999999999999999876654411 124689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCcccc
Q 004862 574 AKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQ 653 (726)
Q Consensus 574 ~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~ 653 (726)
+.+.+.|..||+.... .+++|+|+|.+++++|+++|||+|++++.|+.+|+..||+.+..|.+++.+.+....
T Consensus 700 ~K~s~vya~lRkES~~-------tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldSfi~aQk~Sv~rs 772 (854)
T KOG0477|consen 700 DKISSVYADLRKESMA-------TGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDSFISAQKFSVMRS 772 (854)
T ss_pred HHHHHHHHHHHhhccc-------cCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987654 457999999999999999999999999999999999999999998876543221100
Q ss_pred -------c-cccHHHHHHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCe
Q 004862 654 -------V-NLTAEMAHEIKQAETQIKRRI-----PIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERR 720 (726)
Q Consensus 654 -------~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~ 720 (726)
. ....+..+. ++-.+|++. ..+.+.+..++.++|++++|..-.--.--+.+...|+-+- .+++
T Consensus 773 lr~tF~~y~~~~kd~nel---llf~lkql~~~q~~~~~~~~~~~e~~~ka~q~~i~~~~~fy~s~lf~~~~f~~d-~~r~ 848 (854)
T KOG0477|consen 773 LRKTFARYLSFRKDNNEL---LLFILKQLVAEQMKYQRFGAGLDELIEKAKQLDIHNLSPFYSSELFKDNGFSLD-PKRK 848 (854)
T ss_pred HHHHHHHhcccccCcchh---hhHHHHHHHHHHHHHhhccCCcHHHHHHHHhcCcccCCcccchhhhhhcCcccC-cccC
Confidence 0 000011111 111222211 1134666779999999988765443333344555555543 3455
Q ss_pred EEEec
Q 004862 721 VILRK 725 (726)
Q Consensus 721 ~~~~~ 725 (726)
.|.|.
T Consensus 849 ~il~~ 853 (854)
T KOG0477|consen 849 LILQQ 853 (854)
T ss_pred eeecc
Confidence 66553
No 8
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=100.00 E-value=6.2e-103 Score=824.16 Aligned_cols=587 Identities=36% Similarity=0.566 Sum_probs=509.3
Q ss_pred HHHHHHHHHHhccccCCCcchhHHHHhc----CCCEEEEecchhhccCchHHHHHHhCHHHHHHHHHHHHHHHHHHhccc
Q 004862 34 TTLIKFKEFIRNFERDKNVFPYRESLIE----NPKFLLVHLEDLLAFDADLPSLLRSSPADFLPLFETAAAEVLASLKMK 109 (726)
Q Consensus 34 ~~~~~f~~Fl~~f~~~~~~~~Y~~~l~~----~~~~l~Vd~~dL~~f~~~La~~l~~~P~~~l~~~~~a~~e~~~~~~~~ 109 (726)
+..+.|.+||.++. ....|.+.+.. ....|.|+++||..|++++|..|+.+|.++++.|++|+.++...+...
T Consensus 12 e~~r~f~efLd~~~---D~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~d~~ 88 (818)
T KOG0479|consen 12 ERVRDFIEFLDDEE---DADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRIDDV 88 (818)
T ss_pred HHHHHHHHHhcchh---hhhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcccch
Confidence 44555777776653 23468886664 357899999999999999999999999999999999999998775543
Q ss_pred cCCCCCCcceEEEEecCC--CCcccccccCccCCCcEEEEEeEEEEeecceeeEEEEEEEecCCCCeEEEecCCCCCCCC
Q 004862 110 VDNEEPKTEEVQILLTSK--EDSMSMRSIGAQFISKLVKISGITIAASRVKAKATYVHLSCKNCKSTLDVPCRPGLGGAI 187 (726)
Q Consensus 110 ~~~~~~~~~~i~v~~~~~--~~~~~ir~l~s~~igkLV~v~GiV~~~s~v~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~ 187 (726)
+. .....++|.|.+. ...+++|.|.+.++|+||+++|||+++|-|+|++.+.+..|+..+....-....-.....
T Consensus 89 ~~---~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~Y~D~T~~~~ 165 (818)
T KOG0479|consen 89 YA---KVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERDYRDATMLTT 165 (818)
T ss_pred hh---hhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhhhcchheecc
Confidence 32 2344678888653 467899999999999999999999999999999999999999987665433322111112
Q ss_pred CCC--CCCCCCCCCCCCCCCCCeEEecCCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccccccCCcEEEEEEEE
Q 004862 188 VPR--SCGHIPQAGEEPCPIDPWIIVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIY 265 (726)
Q Consensus 188 ~P~--~C~~~~~~g~~~C~~~~~~~~~~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V~GIl 265 (726)
.|. ..|... =..+++......|.|.|+|.|.|||.||..|+|++||+++|+|++||||+|+|||+|.|+|||
T Consensus 166 ~p~~svYPT~D------e~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV~ivG~y 239 (818)
T KOG0479|consen 166 LPTGSVYPTRD------EDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIY 239 (818)
T ss_pred cccCCcCCccC------CCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCeeEEEEEE
Confidence 222 222210 124568888899999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCCCCCCcceeEeeeEEEEEeeeeeccccccCCCCCCHHHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHH
Q 004862 266 SIFQSANSPASHKGAVAVRQPYIRVVGLEETNEASSRGAAAFTQEEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKA 345 (726)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~a 345 (726)
+..+... + .+..+.|.+.|-+++|..-.+ .....++.+|+..|+++++.+++|+.|+.|+||+||||+.+|+|
T Consensus 240 r~Lp~k~-~---g~tsg~FRTvliaNni~~l~k---e~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkA 312 (818)
T KOG0479|consen 240 RSLPGKS-N---GNTSGTFRTVLIANNIELLSK---EAAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKA 312 (818)
T ss_pred eeccCcc-C---CcccceeEEEEEeccHHhhcc---cccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHH
Confidence 9876542 1 123456788888888876543 24678999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccC
Q 004862 346 VSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGG 425 (726)
Q Consensus 346 ill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G 425 (726)
|+|.|.||+.+++.+|+++|||+||||+|+|.|+||+|+|++.+.+|+++-++|.|+|.+|||+++..|..+|+..+++|
T Consensus 313 illLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAG 392 (818)
T KOG0479|consen 313 ILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAG 392 (818)
T ss_pred HHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh
Q 004862 426 AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL 505 (726)
Q Consensus 426 ~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll 505 (726)
|+++||.||+||||||+|+.-++.++|++||||+|+|+|+|++++||+||+||||+||.+|+|+..+++.+|+.|+..||
T Consensus 393 AMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLL 472 (818)
T KOG0479|consen 393 AMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLL 472 (818)
T ss_pred ceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccc-----------------------------------------cc
Q 004862 506 SRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSA-----------------------------------------DS 544 (726)
Q Consensus 506 ~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~-----------------------------------------~~ 544 (726)
+||||+|++.|..+.+.|..|++|+++.|....+... ..
T Consensus 473 SRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~ 552 (818)
T KOG0479|consen 473 SRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQH 552 (818)
T ss_pred hhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccc
Confidence 9999999999999999999999999999954332210 01
Q ss_pred cccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCC
Q 004862 545 KVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSH 624 (726)
Q Consensus 545 ~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~ 624 (726)
...++.+|+|+||.|||.++.|.|+.+|.++|.+.|..+|...... +..+..|+|+|.||.|||+|.||||+++++
T Consensus 553 ~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~----d~~rt~PiTARtLETlIRLaTAhAKaRlSk 628 (818)
T KOG0479|consen 553 EKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRK----DQERTSPITARTLETLIRLATAHAKARLSK 628 (818)
T ss_pred cceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhcccccc----ccccccCCcHHHHHHHHHHHHHHHHhhhcc
Confidence 2346788999999999999999999999999999999999765421 234689999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhhhhh
Q 004862 625 VATENEVNEAVRLFTVSTM 643 (726)
Q Consensus 625 ~V~~~Dv~~ai~l~~~s~~ 643 (726)
+|+.+|++.|+.|+..++.
T Consensus 629 ~V~~~DAe~A~~Ll~fA~f 647 (818)
T KOG0479|consen 629 VVEKDDAEAAVNLLRFALF 647 (818)
T ss_pred eeehhhHHHHHHHHHHHHH
Confidence 9999999999998876553
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=4.7e-91 Score=784.48 Aligned_cols=500 Identities=48% Similarity=0.765 Sum_probs=447.4
Q ss_pred cccccccCccCCCcEEEEEeEEEEeecceeeEEEEEEEecCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCC-CCe
Q 004862 130 SMSMRSIGAQFISKLVKISGITIAASRVKAKATYVHLSCKNCKSTLDVPCRPGLGGAIVPRSCGHIPQAGEEPCPI-DPW 208 (726)
Q Consensus 130 ~~~ir~l~s~~igkLV~v~GiV~~~s~v~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~P~~C~~~~~~g~~~C~~-~~~ 208 (726)
+.++|+|++.++||||+|+|+|+|+|.|+|++++++|+|..|++.+.+.+..+ .+..|..|++.. |++ ++|
T Consensus 2 ~~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~~--~~~~p~~C~~~~------C~~~~~f 73 (509)
T smart00350 2 PSSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSG--RETEPTVCPPRE------CQSPTPF 73 (509)
T ss_pred CCCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecCC--cccCCCcCCCCc------CCCCCce
Confidence 56899999999999999999999999999999999999999999998876653 578999998754 875 469
Q ss_pred EEecCCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccccccCCcEEEEEEEEEeeeCCCCCCCCCcceeEeeeEE
Q 004862 209 IIVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQSANSPASHKGAVAVRQPYI 288 (726)
Q Consensus 209 ~~~~~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V~GIl~~~~~~~~~~~~~~~~~~~~~~i 288 (726)
.++.+.|+|+|||+|+|||.|+++|.|++||+++|+|++||||+|+|||+|+|+|||++.+... .....+....+..||
T Consensus 74 ~l~~~~s~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~-~~~~~~~~~~~~~~l 152 (509)
T smart00350 74 SLNHERSTFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGF-KLNTVKGLPVFATYI 152 (509)
T ss_pred EeccCCCeEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeecccc-ccccCCCcceeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999874111 111112234578999
Q ss_pred EEEeeeeeccccccC-----CCCCCHHHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCcc
Q 004862 289 RVVGLEETNEASSRG-----AAAFTQEEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVK 363 (726)
Q Consensus 289 ~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~ 363 (726)
++++|+......... ...+|++|++.|.+++++|++|+.|++||+|.|+|++.+|+|++++|+||+.+...+|.+
T Consensus 153 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~ 232 (509)
T smart00350 153 EANHVRKLDYKRSFEDCSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMK 232 (509)
T ss_pred EEeEEEEccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCcc
Confidence 999998653210111 135899999999999999999999999999999999999999999999999988899999
Q ss_pred ccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC
Q 004862 364 LRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM 443 (726)
Q Consensus 364 ~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~ 443 (726)
+||++||||+|+||||||++|+++++++|+..|++|.+.+.+|++++..+++.+++|.+++|++++|++|+||||||++|
T Consensus 233 ~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l 312 (509)
T smart00350 233 IRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKM 312 (509)
T ss_pred ccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhC
Confidence 99999999999999999999999999999999999988888899998888888899999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhh
Q 004862 444 RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQD 523 (726)
Q Consensus 444 ~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d 523 (726)
++..|.+|+++||+|++++.++|....++++++||||+||..|+|++.+++.+++.++++|||||||+|.+.|.+++++|
T Consensus 313 ~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d 392 (509)
T smart00350 313 DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERD 392 (509)
T ss_pred CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccc-cccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccC
Q 004862 524 KLIASHIIKIHASADAV-SADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPI 602 (726)
Q Consensus 524 ~~i~~~il~~~~~~~~~-~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~ 602 (726)
..|++|+++.|...... .......++.++|++||.|||+++.|.+++++.++|.++|+++|....... ....+++
T Consensus 393 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~----~~~~~~~ 468 (509)
T smart00350 393 RELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSE----ARSSIPI 468 (509)
T ss_pred HHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccc----cccccCc
Confidence 99999999987643221 112235799999999999999989999999999999999999997643210 0135899
Q ss_pred ChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhh
Q 004862 603 TVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVST 642 (726)
Q Consensus 603 t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~ 642 (726)
|+|+|++|+|+|+|+|+|++++.|+++||.+|++|++.|+
T Consensus 469 t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s~ 508 (509)
T smart00350 469 TVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESI 508 (509)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999875
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=3.8e-68 Score=567.00 Aligned_cols=326 Identities=53% Similarity=0.839 Sum_probs=271.7
Q ss_pred HHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHh
Q 004862 311 EIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
|++.|.+++++|++|+.|++||||+|+|++.+|+|++|+|+||+.+..++|.+.|+++||||+|+||||||+|+++++++
T Consensus 1 d~~~i~~l~~~~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~ 80 (331)
T PF00493_consen 1 DEEKIKELSKKPNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKL 80 (331)
T ss_dssp THHHHHCCCCTTTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT
T ss_pred CHHHHHHHhcCCcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEE
Q 004862 391 APIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTV 470 (726)
Q Consensus 391 ~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~ 470 (726)
+|+++|++|++++.+|||+++.+++.+++|.+++|++++|++|||||||+++|+.+++..||++||+|+++++++|+..+
T Consensus 81 ~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 81 APRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp -SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred CCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhccc
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred eeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccc---ccc-ccc
Q 004862 471 LNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAV---SAD-SKV 546 (726)
Q Consensus 471 l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~---~~~-~~~ 546 (726)
++++++|+||+||.+|+|++.++..++++++++|++||||+|.+.|.+++++|..+++|+++.|...... ... ...
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999776421 111 125
Q ss_pred cCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcc
Q 004862 547 SKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVA 626 (726)
Q Consensus 547 ~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V 626 (726)
.++.++|++||.|||+++.|.|+++|.+.|.+||+++|+..... ....|+|+|+||++||+|+|+|||+++++|
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~------~~~~~iT~R~LeSLIRLseA~AKl~lr~~V 314 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSN------NKSIPITIRQLESLIRLSEAHAKLRLRDEV 314 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCH------SS-B-SSCCCCCHHHHHHHHHHHCTTSSEC
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhccccccc------ccccccchhhHHHHHHHHHHHHHHhccCce
Confidence 79999999999999988999999999999999999999887421 246899999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhh
Q 004862 627 TENEVNEAVRLFTVST 642 (726)
Q Consensus 627 ~~~Dv~~ai~l~~~s~ 642 (726)
+++|+.+|++|++.|+
T Consensus 315 ~~~Dv~~Ai~L~~~Sl 330 (331)
T PF00493_consen 315 TEEDVEEAIRLFEESL 330 (331)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHhhc
Confidence 9999999999999875
No 11
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-28 Score=265.18 Aligned_cols=294 Identities=19% Similarity=0.230 Sum_probs=211.8
Q ss_pred hcCCccCc-hhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccce
Q 004862 332 IAPSIFGH-DDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTAS 410 (726)
Q Consensus 332 i~p~I~G~-~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~ 410 (726)
=+++|.|. ..+.+++.++--.. +.+.+|||.|++||||+.+|++||+.++|... ++..++|+
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~------PFIaiNCa 305 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANG------PFIAINCA 305 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCC------CeEEEecc
Confidence 35677775 44555555544333 34589999999999999999999999999866 77888888
Q ss_pred eeecC--CCchhhh------------ccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 411 VIRDG--SSREFYL------------EGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 411 ~~~~~--~~~~~~~------------~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
+.++. ++.-|.+ ++|.+.+|+||++|||||+.||...|.+|+++++++++ .+.|.+...+.+++
T Consensus 306 AiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei--~rvG~t~~~~vDVR 383 (560)
T COG3829 306 AIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEI--ERVGGTKPIPVDVR 383 (560)
T ss_pred cCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceE--EecCCCCceeeEEE
Confidence 77654 1122222 56777899999999999999999999999999999995 58999999999999
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeEeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
||||||. +.....+...|..+|++|.+ +-+.+|+.+++.+| +.++.+++..+......
T Consensus 384 IIAATN~------nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~-------------- 443 (560)
T COG3829 384 IIAATNR------NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGR-------------- 443 (560)
T ss_pred EEeccCc------CHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCC--------------
Confidence 9999995 34466778889999999999 56778888888777 56777776654333221
Q ss_pred HHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH-H
Q 004862 555 RYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN-E 633 (726)
Q Consensus 555 ~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~-~ 633 (726)
..+.++++|...|.+| +||+|+|+|+++|+.+.-+ +.....|+.+|+. .
T Consensus 444 ---------~v~~ls~~a~~~L~~y-------------------~WPGNVRELeNviER~v~~--~~~~~~I~~~~lp~~ 493 (560)
T COG3829 444 ---------NVKGLSPDALALLLRY-------------------DWPGNVRELENVIERAVNL--VESDGLIDADDLPAF 493 (560)
T ss_pred ---------CcccCCHHHHHHHHhC-------------------CCCchHHHHHHHHHHHHhc--cCCcceeehhhcchh
Confidence 2346999999999998 7999999999999887653 3334558888887 5
Q ss_pred HHHHHhhhhhhhhhcCccccc--cc-cHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 634 AVRLFTVSTMDAARSGINQQV--NL-TAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 634 ai~l~~~s~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
++.--. ...+...... .+ ...+..+...|.+++.+..++ ..+.|+.+||++.++.+.|++|
T Consensus 494 ~l~~k~-----~~~~~~~~~~~~~l~~~~e~~Ek~~I~~aL~~~~gn--------~~~aAk~LgIsrttL~rKlkk~ 557 (560)
T COG3829 494 ALEEKE-----PRPETTKQIEVGSLKEALEEYEKHLIREALERHGGN--------KSKAAKELGISRTTLYRKLKKY 557 (560)
T ss_pred hhcccc-----cCcCcccCcccccHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHhCCCHHHHHHHHHHh
Confidence 543220 0011000011 11 112233334455555554322 3566888999999999998876
No 12
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.96 E-value=4.9e-28 Score=269.22 Aligned_cols=264 Identities=22% Similarity=0.324 Sum_probs=205.9
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE---Ee-CCCCCCcccccc
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV---YT-SGKGSSAAGLTA 409 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~---~~-~g~~~~~~gl~~ 409 (726)
.+|+|++.+++++.+++.+| .|++|+||||||||++++.++.++|... .. .....+..|...
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g--------------~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~ 257 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGG--------------HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLI 257 (499)
T ss_pred HHhcCcHHHHhhhhhhccCC--------------CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhc
Confidence 35899999999999999887 8999999999999999999999887531 11 111112222211
Q ss_pred e-------eeecC---------CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 410 S-------VIRDG---------SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 410 ~-------~~~~~---------~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
. -.+.+ ..|.+...+|.+.+|++|+|||||++++++..|+.|+++||++.+++.+.|....+++
T Consensus 258 ~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa 337 (499)
T TIGR00368 258 DRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPA 337 (499)
T ss_pred cccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccC
Confidence 0 00000 1233456789999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCC-CCCcCCCc-----cchhh----hccCchhhhcccCeeeEeccCCCh--------hhhHHHHHHHHHHhh
Q 004862 474 RTSVLAAANP-PSGRYDDL-----KSAQD----NIDLQTTILSRFDLIFIVKDIRMY--------NQDKLIASHIIKIHA 535 (726)
Q Consensus 474 ~~~iiaa~Np-~~g~~~~~-----~~~~~----~~~l~~~Ll~RFdli~~l~d~~~~--------~~d~~i~~~il~~~~ 535 (726)
++++|||+|| ++|+|++. ++..+ ...++.+|+|||||++.+++.... +.+..++++|...+.
T Consensus 338 ~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~ 417 (499)
T TIGR00368 338 RFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKARE 417 (499)
T ss_pred CeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 9999999999 79999752 23222 347999999999999999976432 345678888887765
Q ss_pred hcccccc-----cccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHH
Q 004862 536 SADAVSA-----DSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAI 610 (726)
Q Consensus 536 ~~~~~~~-----~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~l 610 (726)
....+.. ..+..++...|++| + .+++++.+.+...|.. ...|.|....+
T Consensus 418 ~q~~R~~~~~~~~~N~~l~~~~l~~~-------~--~l~~~~~~~l~~a~~~-----------------~~lS~R~~~ri 471 (499)
T TIGR00368 418 IQNIRYEKFANINKNADLNSDEIEQF-------C--KLSAIDANDLEGALNK-----------------LGLSSRATHRI 471 (499)
T ss_pred HHHHHhcCCCCCcccccCCHHHHHhh-------c--CCCHHHHHHHHHHHHh-----------------cCCCchHHHHH
Confidence 5433311 12466788888886 2 3899999999988642 45899999999
Q ss_pred HHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 611 VRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 611 irla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
+|+|+++|+|++++.|+.+|+.+|+.+
T Consensus 472 lrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 472 LKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 999999999999999999999999864
No 13
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-28 Score=258.58 Aligned_cols=264 Identities=22% Similarity=0.292 Sum_probs=207.4
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE-----eCCCCCCccccc
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY-----TSGKGSSAAGLT 408 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~-----~~g~~~~~~gl~ 408 (726)
.+|.||+.+|+|+.++..|| +|+|++||||||||++|+.+..++|.-.. ++ .-.+..+..
T Consensus 179 ~DV~GQ~~AKrAleiAAAGg--------------HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s-~I~s~~g~~ 243 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGG--------------HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVS-AIHSLAGDL 243 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcC--------------CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHH-HHhhhcccc
Confidence 46899999999999999999 99999999999999999999888885311 00 000111100
Q ss_pred c--------eeeecC---------CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEe
Q 004862 409 A--------SVIRDG---------SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVL 471 (726)
Q Consensus 409 ~--------~~~~~~---------~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l 471 (726)
. .-.+.+ ..|.-..+||.+.+||+||+||||+.+......++|.+.||++++.|++++...++
T Consensus 244 ~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~y 323 (490)
T COG0606 244 HEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTY 323 (490)
T ss_pred cccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEE
Confidence 0 001111 12234568999999999999999999999999999999999999999999999999
Q ss_pred eCceEEEEecCC-CCCcCCCcc-----chh----hhccCchhhhcccCeeeEeccCCC---------hhhhHHHHHHHHH
Q 004862 472 NSRTSVLAAANP-PSGRYDDLK-----SAQ----DNIDLQTTILSRFDLIFIVKDIRM---------YNQDKLIASHIIK 532 (726)
Q Consensus 472 ~~~~~iiaa~Np-~~g~~~~~~-----~~~----~~~~l~~~Ll~RFdli~~l~d~~~---------~~~d~~i~~~il~ 532 (726)
|++|.++||||| ++|.+.... +.. ...+++.+|++|+|+.+.++..+- .+....+++++..
T Consensus 324 pa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~ 403 (490)
T COG0606 324 PARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAK 403 (490)
T ss_pred eeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHH
Confidence 999999999999 899877653 222 335588999999999999988751 2235778888888
Q ss_pred Hhhhcccccccc--cccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHH
Q 004862 533 IHASADAVSADS--KVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAI 610 (726)
Q Consensus 533 ~~~~~~~~~~~~--~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~l 610 (726)
.+..+..+.... +..++...|++|+ .++.++++.+...-. ...++.|....+
T Consensus 404 AR~~Q~~R~~~~~~Na~l~~~~l~k~~---------~L~~~~~~~L~~al~-----------------~~~lS~R~~~rI 457 (490)
T COG0606 404 AREAQIARAGRIGINAELSEEALRKFC---------ALQREDADLLKAALE-----------------RLGLSARAYHRI 457 (490)
T ss_pred HHHHHHHHhhccCcchhcCHHHHHHhc---------ccCHhHHHHHHHHHH-----------------hcchhHHHHHHH
Confidence 776555444433 5778888999862 378888888877421 356889999999
Q ss_pred HHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 611 VRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 611 irla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
+|+|+++|+|.+.+.|...|+.+|+..-
T Consensus 458 LKvarTiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 458 LKVARTIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred HHHHhhhhcccCcchhhHHHHHHHHhhh
Confidence 9999999999999999999999999754
No 14
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-27 Score=252.85 Aligned_cols=273 Identities=17% Similarity=0.214 Sum_probs=200.9
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecC-------------CCchhhhccCceeecCC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDG-------------SSREFYLEGGAMVLADG 432 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~-------------~~~~~~~~~G~l~la~~ 432 (726)
++.+|||.|++||||..+||+||..++|... +++-++|+...+. +||.+....|.+.+|||
T Consensus 245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~k------PfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdG 318 (550)
T COG3604 245 SDSTVLIRGETGTGKELVARAIHQLSPRRDK------PFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADG 318 (550)
T ss_pred CCCeEEEecCCCccHHHHHHHHHhhCcccCC------CceeeeccccchHHHHHHHhcccccccccchhccCcceeecCC
Confidence 4589999999999999999999999999765 6666777665543 55666677888999999
Q ss_pred CeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCe-e
Q 004862 433 GVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL-I 511 (726)
Q Consensus 433 gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl-i 511 (726)
|++|+|||..||...|.+|++++++|+ |.+.|...+++.+++|||||| .+.+..+.+..|...|+.|.++ =
T Consensus 319 GTLFLDEIGelPL~lQaKLLRvLQegE--ieRvG~~r~ikVDVRiIAATN------RDL~~~V~~G~FRaDLYyRLsV~P 390 (550)
T COG3604 319 GTLFLDEIGELPLALQAKLLRVLQEGE--IERVGGDRTIKVDVRVIAATN------RDLEEMVRDGEFRADLYYRLSVFP 390 (550)
T ss_pred CeEechhhccCCHHHHHHHHHHHhhcc--eeecCCCceeEEEEEEEeccc------hhHHHHHHcCcchhhhhhcccccc
Confidence 999999999999999999999999999 569999999999999999999 4455677888899999999883 4
Q ss_pred eEeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 004862 512 FIVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQ 590 (726)
Q Consensus 512 ~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~ 590 (726)
+.+|+..++..| ..+|.+++......... -.-.++++|.+.|.+|
T Consensus 391 l~lPPLRER~~DIplLA~~Fle~~~~~~gr-----------------------~~l~ls~~Al~~L~~y----------- 436 (550)
T COG3604 391 LELPPLRERPEDIPLLAGYFLEKFRRRLGR-----------------------AILSLSAEALELLSSY----------- 436 (550)
T ss_pred cCCCCcccCCccHHHHHHHHHHHHHHhcCC-----------------------cccccCHHHHHHHHcC-----------
Confidence 566888888777 67788877765433221 1225999999999998
Q ss_pred hcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhh-hhh---cCccc----c--cc-ccHH
Q 004862 591 ANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMD-AAR---SGINQ----Q--VN-LTAE 659 (726)
Q Consensus 591 ~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~-~~~---~~~~~----~--~~-~~~~ 659 (726)
.||+|+|+|+++|+.|...| +..++.+|+ --+.....++.. ... ..... . .+ ....
T Consensus 437 --------~wPGNVRELen~veRavlla----~~~~~~~d~-~~l~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~l~~~~ 503 (550)
T COG3604 437 --------EWPGNVRELENVVERAVLLA----GRLTRRGDL-CTLELSLSALLWKTLPAPEPSALPEPALPGEHTLREAT 503 (550)
T ss_pred --------CCCCcHHHHHHHHHHHHHHh----cccCCCcce-eehhhhhhccccccCCCCCccccCCccCCCcccchhhh
Confidence 69999999999999988777 334554553 111111110000 000 00000 0 01 1223
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 660 MAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
.....+.|.+++++..++ ...+|+.+|+++.++.+.+++|
T Consensus 504 ~~~eR~~I~~aL~~~~~~--------~a~AAr~LGl~~~~L~~~~kRl 543 (550)
T COG3604 504 EEFERQLIIAALEETNGN--------WAGAARRLGLTRRTLLYRMKRL 543 (550)
T ss_pred HHHHHHHHHHHHHHhCCc--------HHHHHHHhCCCHHHHHHHHHHc
Confidence 344455667777765332 3557888999999999998876
No 15
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.95 E-value=3.5e-27 Score=260.80 Aligned_cols=265 Identities=18% Similarity=0.298 Sum_probs=201.1
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE---e-CCCCCCcccc--
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY---T-SGKGSSAAGL-- 407 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~---~-~g~~~~~~gl-- 407 (726)
..++|+..+++++.+++.+| .|++|+|+||+|||++++.++.+.|.... . ...-.+.+|.
T Consensus 191 ~~v~Gq~~~~~al~laa~~G--------------~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~ 256 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGG--------------HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAES 256 (506)
T ss_pred EEEECcHHHHhhhheeccCC--------------cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcccc
Confidence 35789999999999888877 89999999999999999999998875311 0 0000111121
Q ss_pred -----cceeeecC---------CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 408 -----TASVIRDG---------SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 408 -----~~~~~~~~---------~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
+..-.+.+ ..|.+...+|.+.+|++|+|||||++.+++..|+.|+++||+|.+++.+.|....+++
T Consensus 257 ~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa 336 (506)
T PRK09862 257 VQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPA 336 (506)
T ss_pred ccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccC
Confidence 11111111 1234557789999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCC-CCCcCCCc---cchhhh----ccCchhhhcccCeeeEeccCCC---------hhhhHHHHHHHHHHhhh
Q 004862 474 RTSVLAAANP-PSGRYDDL---KSAQDN----IDLQTTILSRFDLIFIVKDIRM---------YNQDKLIASHIIKIHAS 536 (726)
Q Consensus 474 ~~~iiaa~Np-~~g~~~~~---~~~~~~----~~l~~~Ll~RFdli~~l~d~~~---------~~~d~~i~~~il~~~~~ 536 (726)
++++|||+|| ++|.|+.. |+..+. ..++.+|||||||.+.+++.+. .+....+++++......
T Consensus 337 ~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~ 416 (506)
T PRK09862 337 RFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARER 416 (506)
T ss_pred CEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHH
Confidence 9999999999 68988653 222222 4699999999999999987642 12334566676655443
Q ss_pred cccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHH
Q 004862 537 ADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEA 616 (726)
Q Consensus 537 ~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a 616 (726)
...+....+..++...+++|+ .+++++.+.+..+|.. ...|.|....++|+|++
T Consensus 417 q~~r~~~~n~~l~~~~l~~~~---------~l~~~~~~~l~~~~~~-----------------~~lS~Ra~~rlLrvART 470 (506)
T PRK09862 417 QFKRQNKLNAWLDSPEIRQFC---------KLESEDARWLEETLIH-----------------LGLSIRAWQRLLKVART 470 (506)
T ss_pred HHHHHHHHhcccCHHHHHHHh---------CCCHHHHHHHHHHHHH-----------------cCCCHHHHHHHHHHHHH
Confidence 222111113456677777763 3889999999888643 45789999999999999
Q ss_pred HHhhhCCCcccHHHHHHHHHHH
Q 004862 617 LAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 617 ~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
+|+|++++.|+++|+.+|+.+.
T Consensus 471 iADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 471 IADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred HHHHcCCCCCCHHHHHHHHHhh
Confidence 9999999999999999999765
No 16
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.95 E-value=3.3e-27 Score=255.13 Aligned_cols=299 Identities=18% Similarity=0.230 Sum_probs=207.6
Q ss_pred hhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccce
Q 004862 331 KIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTAS 410 (726)
Q Consensus 331 si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~ 410 (726)
.....++|+-..-+.+.-.+..- -.++.+|||.|++||||..+||+||..++|.-. +++.++|+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~------PFVavNca 201 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKG------PFIAVNCA 201 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCC------Cceeeecc
Confidence 35667888755444433222100 123489999999999999999999999998754 66677777
Q ss_pred eeecC-------------CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 411 VIRDG-------------SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 411 ~~~~~-------------~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
.+... +||.-.-..|.+..|+||+||||||..||.+.|.+|++++++++ +.+.|.+.+.+.+++|
T Consensus 202 Aip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~--~~rvG~~~~i~vdvRi 279 (464)
T COG2204 202 AIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQERE--FERVGGNKPIKVDVRI 279 (464)
T ss_pred cCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCe--eEecCCCcccceeeEE
Confidence 66543 23333345578899999999999999999999999999999999 4589999999999999
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccC-eeeEeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
|||||. +.........|.+.|++|++ +.+.+|+..++.+| +.|++|++........
T Consensus 280 IaaT~~------dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~---------------- 337 (464)
T COG2204 280 IAATNR------DLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELG---------------- 337 (464)
T ss_pred EeecCc------CHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcC----------------
Confidence 999994 34466677889999999999 67888888888877 6778887776543321
Q ss_pred HHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 556 YIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 556 yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
.-.+.++++|.+.|..| +||+|+|+|+|+++.+..++. .+.++.+|+..-+
T Consensus 338 -------~~~~~~s~~a~~~L~~y-------------------~WPGNVREL~N~ver~~il~~---~~~i~~~~l~~~~ 388 (464)
T COG2204 338 -------RPPKGFSPEALAALLAY-------------------DWPGNVRELENVVERAVILSE---GPEIEVEDLPLEI 388 (464)
T ss_pred -------CCCCCCCHHHHHHHHhC-------------------CCChHHHHHHHHHHHHHhcCC---ccccchhhccccc
Confidence 13457999999999998 799999999999988876554 7788888877433
Q ss_pred HHHhhhhhhhhhcCcc-cc-cccc-HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 636 RLFTVSTMDAARSGIN-QQ-VNLT-AEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 636 ~l~~~s~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
.. ..........+.. .. ..+. ..+.-+...|.++|....++ +.+.|+.+||++.+++++|++|
T Consensus 389 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~~aL~~~~g~--------~~~aA~~LGi~R~tLy~Klk~~ 454 (464)
T COG2204 389 LA-PAAEALAGPAGEAALPGLPLGEALAEVERQLILQALERTGGN--------KSEAAERLGISRKTLYRKLKEY 454 (464)
T ss_pred cc-cccccccccccccccccccHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHCCCHHHHHHHHHHh
Confidence 00 0000000000100 00 0011 11222223344455544322 3455777788888888777766
No 17
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.5e-25 Score=220.19 Aligned_cols=285 Identities=17% Similarity=0.260 Sum_probs=212.1
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCc--ceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCccccccee
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGD--VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASV 411 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~--~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~ 411 (726)
+.+||+.+|.-+-+.+.+.. .|+. -|+||+||||.|||+||..+++.+...+.+ +|......|-.++.
T Consensus 27 efiGQ~~vk~~L~ifI~AAk---------~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaai 97 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAK---------KRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAI 97 (332)
T ss_pred HhcChHHHHHHHHHHHHHHH---------hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHH
Confidence 56899999999988887652 1222 499999999999999999999998877654 22222111111111
Q ss_pred eecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeecc-c---eEEEee-CceEEEEecCCCCC
Q 004862 412 IRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKA-G---ITTVLN-SRTSVLAAANPPSG 486 (726)
Q Consensus 412 ~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~-g---~~~~l~-~~~~iiaa~Np~~g 486 (726)
.. .+..+.|+|||||+.+++..-+.|+.+||+-.+.+.=+ | ....++ ..|.+|+||-..
T Consensus 98 Lt--------------~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~-- 161 (332)
T COG2255 98 LT--------------NLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA-- 161 (332)
T ss_pred Hh--------------cCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc--
Confidence 10 24567899999999999999999999999988765311 1 122221 358888888642
Q ss_pred cCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCC
Q 004862 487 RYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHP 566 (726)
Q Consensus 487 ~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p 566 (726)
..++.+|.+||.++..+.- ++.+.|.+.+.-....+.-
T Consensus 162 -----------G~lt~PLrdRFGi~~rlef-------------------------------Y~~~eL~~Iv~r~a~~l~i 199 (332)
T COG2255 162 -----------GMLTNPLRDRFGIIQRLEF-------------------------------YTVEELEEIVKRSAKILGI 199 (332)
T ss_pred -----------ccccchhHHhcCCeeeeec-------------------------------CCHHHHHHHHHHHHHHhCC
Confidence 2388999999999998743 4444455555444444677
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhh
Q 004862 567 RLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAA 646 (726)
Q Consensus 567 ~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~ 646 (726)
.+++++...|.+. ..+|||-..+|+|+.+.+|..+....|+.+-+..|+..+.
T Consensus 200 ~i~~~~a~eIA~r--------------------SRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~------- 252 (332)
T COG2255 200 EIDEEAALEIARR--------------------SRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKMLD------- 252 (332)
T ss_pred CCChHHHHHHHHh--------------------ccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhC-------
Confidence 8999999888875 4589999999999999999999999999999999987665
Q ss_pred hcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH-HHHHCCeEEEecCCeEEEec
Q 004862 647 RSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALI-IMHQRDEVEYKRERRVILRK 725 (726)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~g~~~~~~ 725 (726)
.|..+++...+.++ ..+-+.+ .+++++.++| +...|.+++++++.++ .|.+.|+|+++.+||++|+.
T Consensus 253 ----Vd~~GLd~~D~k~L----~~li~~f-~GgPVGl~ti---a~~lge~~~TiEdv~EPyLiq~gfi~RTpRGR~aT~~ 320 (332)
T COG2255 253 ----VDELGLDEIDRKYL----RALIEQF-GGGPVGLDTI---AAALGEDRDTIEDVIEPYLIQQGFIQRTPRGRIATAK 320 (332)
T ss_pred ----cccccccHHHHHHH----HHHHHHh-CCCCccHHHH---HHHhcCchhHHHHHHhHHHHHhchhhhCCCcceecHH
Confidence 23345554444444 4443333 2568999999 7788999999999999 88999999999999999975
No 18
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.93 E-value=5.3e-25 Score=254.28 Aligned_cols=268 Identities=22% Similarity=0.244 Sum_probs=200.5
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCC-------------
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSG------------- 399 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g------------- 399 (726)
+..|+||+.+|++++++++.+.. .+|||.|+||||||++|++++.++|.-....|
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~------------g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRI------------GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCC------------CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 46799999999999999986511 37999999999999999999999973111100
Q ss_pred ----------------------CCCCccccccee--eecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHH
Q 004862 400 ----------------------KGSSAAGLTASV--IRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAM 455 (726)
Q Consensus 400 ----------------------~~~~~~gl~~~~--~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~m 455 (726)
.+.+...|.++. ...-..+.+...+|.+..|++|+|||||++.|++..|+.|+++|
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l 150 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA 150 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH
Confidence 000000111111 00001345667899999999999999999999999999999999
Q ss_pred hcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhh
Q 004862 456 EQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHA 535 (726)
Q Consensus 456 e~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~ 535 (726)
+++.+.+.+.|....+++++.+|||+||..| .++++|++||++.+.+.+..+.+.+..+..+.+....
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~eg------------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~ 218 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEEG------------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDA 218 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCCC------------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999998533 3889999999999999888776666666655443221
Q ss_pred hcccccccccccCCHHHHHHHHHHhHccCC-CCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccC-ChhHHHHHHHH
Q 004862 536 SADAVSADSKVSKEENWLKRYIQYCRLECH-PRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPI-TVRQLEAIVRL 613 (726)
Q Consensus 536 ~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~-p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~-t~R~L~~lirl 613 (726)
.... ...........+.++|..++.... ..+++++.++|..++..++ + ++|....++|+
T Consensus 219 ~~~~--~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~-----------------i~s~Ra~i~~~r~ 279 (633)
T TIGR02442 219 DPEA--FAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFG-----------------VDGHRADIVMARA 279 (633)
T ss_pred CcHH--HHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC-----------------CCCccHHHHHHHH
Confidence 1100 000001123467788888887433 3689999999999987542 3 57999999999
Q ss_pred HHHHHhhhCCCcccHHHHHHHHHHHhhhhh
Q 004862 614 SEALAKMKLSHVATENEVNEAVRLFTVSTM 643 (726)
Q Consensus 614 a~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~ 643 (726)
|+|+|.|++++.|+++|+.+|+.++....+
T Consensus 280 Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 280 ARALAALDGRRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHhhhhc
Confidence 999999999999999999999998875543
No 19
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.93 E-value=4.6e-26 Score=221.40 Aligned_cols=172 Identities=27% Similarity=0.399 Sum_probs=100.5
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC----CCCCCcccc-
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS----GKGSSAAGL- 407 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~----g~~~~~~gl- 407 (726)
+.+|.||+.+|+|++++.+|+ +|+||+||||||||++|+.+..++|.-.... ....+..++
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~--------------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~ 67 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG--------------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLG 67 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S
T ss_pred hhhhcCcHHHHHHHHHHHcCC--------------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCC
Confidence 468999999999999999998 8999999999999999999999998643221 111122221
Q ss_pred -cceee-----ecC---------CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 408 -TASVI-----RDG---------SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 408 -~~~~~-----~~~---------~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
..... +.+ ..+.....||.+.+||+||||+||+..+++...+.|+++||++.+++.++|...++|
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~P 147 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYP 147 (206)
T ss_dssp ---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB
T ss_pred CCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEe
Confidence 01111 111 012235689999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCC-CCCcCCCc-----cchh----hhccCchhhhcccCeeeEeccCC
Q 004862 473 SRTSVLAAANP-PSGRYDDL-----KSAQ----DNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 473 ~~~~iiaa~Np-~~g~~~~~-----~~~~----~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
++|.+|||+|| ++|.|... ++.. ....++.+|++|||+.+.++...
T Consensus 148 a~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~ 203 (206)
T PF01078_consen 148 ARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVS 203 (206)
T ss_dssp --EEEEEEE-S---------------------------------------------
T ss_pred cccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999 99988732 2332 33558899999999999887654
No 20
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.93 E-value=2.4e-24 Score=228.58 Aligned_cols=269 Identities=17% Similarity=0.203 Sum_probs=193.2
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCC--C---------
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGK--G--------- 401 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~--~--------- 401 (726)
+..|+||+.+|.+++++++... .-|+||.|+||+|||+++++++.++|..-...+. .
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 4578999999999999998741 1489999999999999999999988642110000 0
Q ss_pred --------------------CCcc---------cccceeeecC--CCchhhhccCceeecCCCeEEecccCcCCHHHHHH
Q 004862 402 --------------------SSAA---------GLTASVIRDG--SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVA 450 (726)
Q Consensus 402 --------------------~~~~---------gl~~~~~~~~--~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~ 450 (726)
.+.. .++++..-+. .+|.+.+++|.+..|++|++||||++.|++..|..
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~ 150 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDV 150 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHH
Confidence 0001 1111111111 25778889999999999999999999999999999
Q ss_pred HHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHH
Q 004862 451 IHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHI 530 (726)
Q Consensus 451 L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~i 530 (726)
|+++|+++.+++.+.|....+++++.++|++||..| .++++|++||.+.+.+..+.+.+....|.++.
T Consensus 151 Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg------------~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 151 LLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred HHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccC------------CCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 999999998888899999999999999999998643 28999999999999888876533333333332
Q ss_pred HHHhhhcccccccccccCCHHHHHHHHHHhHccCC-CCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHH
Q 004862 531 IKIHASADAVSADSKVSKEENWLKRYIQYCRLECH-PRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEA 609 (726)
Q Consensus 531 l~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~-p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~ 609 (726)
............ ........+.+-|..+++.+. ..+++++.+++.+.+..+|. -++|....
T Consensus 219 ~~~~~~~~~~~~--~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~----------------~s~Ra~i~ 280 (337)
T TIGR02030 219 TEYDADPHAFCE--KWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDV----------------DGLRGELT 280 (337)
T ss_pred hhcccCchhhhh--hhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCC----------------CCCcHHHH
Confidence 111000000000 000012234455555665332 35899999999998765431 26799999
Q ss_pred HHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhh
Q 004862 610 IVRLSEALAKMKLSHVATENEVNEAVRLFTVSTM 643 (726)
Q Consensus 610 lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~ 643 (726)
++|.|+|+|.+++++.|+++||..|..+......
T Consensus 281 l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 281 LNRAAKALAAFEGRTEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999988876643
No 21
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.92 E-value=5.8e-24 Score=225.04 Aligned_cols=264 Identities=16% Similarity=0.196 Sum_probs=187.2
Q ss_pred CCccCchhHHHHHHHHHh-CCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCC-----------
Q 004862 334 PSIFGHDDVKKAVSCLLF-GGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKG----------- 401 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~-~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~----------- 401 (726)
..|.|++.+|++++++++ .| -.|+||.|+||||||+++++++.++|.-....+..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~-------------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPG-------------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPE 74 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccC-------------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcc
Confidence 468899999999998875 22 05899999999999999999999997522111110
Q ss_pred ----------------------CCcccccceeeecC--CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhc
Q 004862 402 ----------------------SSAAGLTASVIRDG--SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 402 ----------------------~~~~gl~~~~~~~~--~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~ 457 (726)
.+...++++..-+. .+|.+.+++|.+..|++|++|+||++.++++.|+.|+++|++
T Consensus 75 ~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee 154 (334)
T PRK13407 75 WAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred cccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHc
Confidence 00000111111111 146778899999999999999999999999999999999999
Q ss_pred ceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhc
Q 004862 458 QTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASA 537 (726)
Q Consensus 458 ~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~ 537 (726)
+.+++.+.|....+++++.++|++||..+ .++++|++||.+.+.+..+.+.+....+..+........
T Consensus 155 ~~v~v~r~G~~~~~p~rfiviAt~NP~e~------------~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~ 222 (334)
T PRK13407 155 GENVVEREGLSIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADH 222 (334)
T ss_pred CCeEEEECCeEEecCCCEEEEecCCcccC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999998533 288999999999999977765343333333221110000
Q ss_pred ccc--cccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHH
Q 004862 538 DAV--SADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSE 615 (726)
Q Consensus 538 ~~~--~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~ 615 (726)
... ..........+.+...-...+ ...+++++.+++.+.....|. -++|....+++.|.
T Consensus 223 ~~~~~~~~~~~~~~~~~i~~a~~~~~---~V~v~~~~~~yi~~l~~~~~~----------------~s~Ra~i~l~~aA~ 283 (334)
T PRK13407 223 DAFMAKWGAEDMQLRGRILGARARLP---QLKTPNTVLHDCAALCIALGS----------------DGLRGELTLLRAAR 283 (334)
T ss_pred hhhhccccccccCCHHHHHHHHHhcC---CcccCHHHHHHHHHHHHHHCC----------------CCchHHHHHHHHHH
Confidence 000 000012233344444333222 235899999999998765542 26788888999999
Q ss_pred HHHhhhCCCcccHHHHHHHHHHHhhh
Q 004862 616 ALAKMKLSHVATENEVNEAVRLFTVS 641 (726)
Q Consensus 616 a~A~l~~~~~V~~~Dv~~ai~l~~~s 641 (726)
++|-+++++.|+++|+..+..+....
T Consensus 284 a~A~l~Gr~~V~~~Di~~~~~~vl~h 309 (334)
T PRK13407 284 ALAAFEGAEAVGRSHLRSVATMALSH 309 (334)
T ss_pred HHHHHcCCCeeCHHHHHHHHHHhhhh
Confidence 99999999999999999888665544
No 22
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.92 E-value=8.2e-24 Score=241.60 Aligned_cols=258 Identities=17% Similarity=0.167 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE-Ee-CCCCCCcccccceee--ecC
Q 004862 340 DDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV-YT-SGKGSSAAGLTASVI--RDG 415 (726)
Q Consensus 340 ~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~-~~-~g~~~~~~gl~~~~~--~~~ 415 (726)
+.+|.|++|..+...- -||||.|+||||||+++++++.++++.. |+ ...+.+...|.+.+- ...
T Consensus 1 ~~~~~Al~l~av~p~~------------g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~ 68 (589)
T TIGR02031 1 ERAKLALTLLAVDPSL------------GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESL 68 (589)
T ss_pred ChHHHHHHHhccCCCc------------ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhh
Confidence 4689999998887621 4899999999999999999999998741 22 111112222322211 001
Q ss_pred CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchh
Q 004862 416 SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQ 495 (726)
Q Consensus 416 ~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~ 495 (726)
.++.|..++|.+..|++|++||||++.+++..|..|+++|+++.+++.+.|....+++++++|||+||..
T Consensus 69 ~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e---------- 138 (589)
T TIGR02031 69 AGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE---------- 138 (589)
T ss_pred hcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc----------
Confidence 2467888999999999999999999999999999999999999999999999999999999999999853
Q ss_pred hhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCC-CCCCHHHHH
Q 004862 496 DNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECH-PRLSESASA 574 (726)
Q Consensus 496 ~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~-p~ls~ea~~ 574 (726)
....|+++|++||++.+.+.+.+..+....|.++.+..+... .......++++|..++..+. ..+++++.+
T Consensus 139 ~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~--------~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~ 210 (589)
T TIGR02031 139 GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFR--------MNDELELLRGQIEAARELLPQVTISAEQVK 210 (589)
T ss_pred ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhh--------cchhhHHHHHHHHHHHHhcCCccCCHHHHH
Confidence 123589999999999998888876665566666655321110 12345678888888887533 268999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhh
Q 004862 575 KLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTM 643 (726)
Q Consensus 575 ~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~ 643 (726)
+|..++..++ . .++|....++|.|+|+|.+++++.|+++|+.+|+.++....+
T Consensus 211 ~l~~~~~~~g---------------v-~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 211 ELVLTAASLG---------------I-SGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred HHHHHHHHcC---------------C-CCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhc
Confidence 9999976431 1 248999999999999999999999999999999998876544
No 23
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.92 E-value=1.1e-24 Score=220.56 Aligned_cols=268 Identities=18% Similarity=0.205 Sum_probs=195.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecC--CCchhhhc------cCceeecCCCeEEecc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDG--SSREFYLE------GGAMVLADGGVVCIDE 439 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~--~~~~~~~~------~G~l~la~~gvl~iDE 439 (726)
.++||.|++||||..+|+++|..+||+.- .+.+++|+..++. ++.-|... .|.+.+|+||++|+||
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~------pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDe 301 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSK------PFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDE 301 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCC------CeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeeh
Confidence 58999999999999999999999999754 6777888777654 23334443 4678899999999999
Q ss_pred cCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeEeccCC
Q 004862 440 FDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKDIR 518 (726)
Q Consensus 440 i~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d~~ 518 (726)
|.+|++..|.+|++++.+|+ +.+.|......++++||+||.- +...+.+...+...|+.|.+ |.+.+|+..
T Consensus 302 IgEmSp~lQaKLLRFL~DGt--FRRVGee~Ev~vdVRVIcatq~------nL~~lv~~g~fReDLfyRLNVLtl~~PpLR 373 (511)
T COG3283 302 IGEMSPRLQAKLLRFLNDGT--FRRVGEDHEVHVDVRVICATQV------NLVELVQKGKFREDLFYRLNVLTLNLPPLR 373 (511)
T ss_pred hhhcCHHHHHHHHHHhcCCc--eeecCCcceEEEEEEEEecccc------cHHHHHhcCchHHHHHHHhheeeecCCccc
Confidence 99999999999999999999 5589999999999999999984 33456677889999999999 788888888
Q ss_pred Chhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 004862 519 MYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEA 597 (726)
Q Consensus 519 ~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~ 597 (726)
++..| ..++++++..+..... ...|.++++...+|.+|
T Consensus 374 er~~di~pL~e~Fv~q~s~elg-----------------------~p~pkl~~~~~~~L~~y------------------ 412 (511)
T COG3283 374 ERPQDIMPLAELFVQQFSDELG-----------------------VPRPKLAADLLTVLTRY------------------ 412 (511)
T ss_pred cCcccchHHHHHHHHHHHHHhC-----------------------CCCCccCHHHHHHHHHc------------------
Confidence 77766 5677777665543321 25789999999999998
Q ss_pred CCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCC
Q 004862 598 APIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPI 677 (726)
Q Consensus 598 ~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (726)
.||+|+|||.+.+-.|.+... ...++.+|+.-+-.-.....-+....| +..+.+..++..+.+++
T Consensus 413 -~WpGNVRqL~N~iyRA~s~~E---g~~l~i~~i~Lp~~~~~~~~~~~~~~g---------sLdei~~~fE~~VL~rl-- 477 (511)
T COG3283 413 -AWPGNVRQLKNAIYRALTLLE---GYELRIEDILLPDYDAATVVGEDALEG---------SLDEIVSRFERSVLTRL-- 477 (511)
T ss_pred -CCCccHHHHHHHHHHHHHHhc---cCccchhhcccCCcccccccchhhccC---------CHHHHHHHHHHHHHHHH--
Confidence 799999999999988776544 678888888743311111111111122 22333333444333221
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 678 GNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 678 ~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
+.++.+..+.|+++|.|...+.++|++|
T Consensus 478 --y~~yPStRkLAkRLgvSHTaIAnKLRqy 505 (511)
T COG3283 478 --YRSYPSTRKLAKRLGVSHTAIANKLRQY 505 (511)
T ss_pred --HHhCCcHHHHHHHhCCcHHHHHHHHHHh
Confidence 1223334555777777777777666554
No 24
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.92 E-value=9.1e-24 Score=223.68 Aligned_cols=268 Identities=14% Similarity=0.177 Sum_probs=191.0
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCC-----------
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKG----------- 401 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~----------- 401 (726)
+..|+||+.+|+||+++++.... -++||.|++|||||+++|.++..++......+..
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~------------~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~ 83 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKI------------GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELM 83 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCC------------CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhh
Confidence 34689999999999999987411 3699999999999999999998887532111110
Q ss_pred --------------------CCcccccceeeecC-----------CCchhhhccCceeecCCCeEEecccCcCCHHHHHH
Q 004862 402 --------------------SSAAGLTASVIRDG-----------SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVA 450 (726)
Q Consensus 402 --------------------~~~~gl~~~~~~~~-----------~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~ 450 (726)
.+...+..++..+. ..+.+.+++|.+..|++|++|+||++.+++..|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~ 163 (350)
T CHL00081 84 SDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDI 163 (350)
T ss_pred chhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHH
Confidence 00000000000000 13445668999999999999999999999999999
Q ss_pred HHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHH
Q 004862 451 IHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHI 530 (726)
Q Consensus 451 L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~i 530 (726)
|+++|+++.+++.+.|....+++++.++|+.||..|. ++++|++||.+.+.+..+.+.+...+|.++.
T Consensus 164 LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~------------l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 164 LLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGE------------LRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred HHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCC------------CCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 9999999998899999999999999999999986432 8899999999999998877545444444433
Q ss_pred HHHhhhccc--ccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHH
Q 004862 531 IKIHASADA--VSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLE 608 (726)
Q Consensus 531 l~~~~~~~~--~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~ 608 (726)
......... ...........+.+...-...+ ...+++++.++|.+....+|. -++|...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~---~V~v~~~~~~yi~~l~~~~~~----------------~s~Ra~i 292 (350)
T CHL00081 232 TSFDKNPQEFREKYEESQEELRSKIVAAQNLLP---KVEIDYDLRVKISQICSELDV----------------DGLRGDI 292 (350)
T ss_pred hccccChhhhhhhhccccccCHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHCC----------------CCChHHH
Confidence 211000000 0000011223333433322222 236899999999998765531 3689999
Q ss_pred HHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhh
Q 004862 609 AIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTM 643 (726)
Q Consensus 609 ~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~ 643 (726)
.++|.|+|+|-+++++.|+++||..+..+......
T Consensus 293 ~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 293 VTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999988876654
No 25
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.88 E-value=6.8e-22 Score=211.00 Aligned_cols=206 Identities=19% Similarity=0.223 Sum_probs=150.3
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec-------------CCCchhhhccCceeecCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD-------------GSSREFYLEGGAMVLADGG 433 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~-------------~~~~~~~~~~G~l~la~~g 433 (726)
+.+|||.|++||||+++|++||..+++... ++..++|+...+ ..++.-...+|.+..|++|
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~------pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG 95 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQG------PLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGG 95 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCC------CeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCC
Confidence 379999999999999999999998876321 222233322111 1112222346778899999
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eee
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIF 512 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~ 512 (726)
++|||||+.|+.+.|..|+.+++++.+ .+.|.....+.++++|+|+|.. .........+.+.|++||+ +.+
T Consensus 96 tL~Ldei~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiI~at~~~------l~~~~~~g~fr~dL~~rl~~~~i 167 (329)
T TIGR02974 96 TLFLDELATASLLVQEKLLRVIEYGEF--ERVGGSQTLQVDVRLVCATNAD------LPALAAEGRFRADLLDRLAFDVI 167 (329)
T ss_pred EEEeCChHhCCHHHHHHHHHHHHcCcE--EecCCCceeccceEEEEechhh------HHHHhhcCchHHHHHHHhcchhc
Confidence 999999999999999999999999984 4667777788999999999952 2233455678899999996 688
Q ss_pred EeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 513 IVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 513 ~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
.+|+..++..| ..++.+++..+... ....+.+.++++|.+.|..|
T Consensus 168 ~lPpLReR~eDI~~L~~~fl~~~~~~----------------------~~~~~~~~ls~~a~~~L~~y------------ 213 (329)
T TIGR02974 168 TLPPLRERQEDIMLLAEHFAIRMARE----------------------LGLPLFPGFTPQAREQLLEY------------ 213 (329)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHH----------------------hCCCCCCCcCHHHHHHHHhC------------
Confidence 88988887766 56666665532211 11111157999999999998
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHH
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENE 630 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~D 630 (726)
+||+|+|+|+++++.+...+. .+.++.+|
T Consensus 214 -------~WPGNvrEL~n~i~~~~~~~~---~~~~~~~~ 242 (329)
T TIGR02974 214 -------HWPGNVRELKNVVERSVYRHG---LEEAPIDE 242 (329)
T ss_pred -------CCCchHHHHHHHHHHHHHhCC---CCccchhh
Confidence 799999999999988776553 33455555
No 26
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.88 E-value=4.5e-21 Score=208.18 Aligned_cols=266 Identities=13% Similarity=0.127 Sum_probs=185.6
Q ss_pred hHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc---EEeCCC
Q 004862 324 AYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA---VYTSGK 400 (726)
Q Consensus 324 ~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~---~~~~g~ 400 (726)
.+..+...+...|+|++.+.+.+++++.+| .||||.||||||||++|++++..+.+. .+....
T Consensus 10 ~i~~l~~~l~~~i~gre~vI~lll~aalag--------------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ 75 (498)
T PRK13531 10 RISRLSSALEKGLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 75 (498)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHccC--------------CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeee
Confidence 356788889999999999999999888887 799999999999999999999987642 111111
Q ss_pred CCCccccccee-eec-CCCchhh-hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 401 GSSAAGLTASV-IRD-GSSREFY-LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 401 ~~~~~gl~~~~-~~~-~~~~~~~-~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
.++..++++.. ... ...+.|. ..+|.+..++ ++|+|||+++++..|.+|+++|+++.++. +|....+|.++.+
T Consensus 76 fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv 151 (498)
T PRK13531 76 FSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLV 151 (498)
T ss_pred ecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEE
Confidence 11222343322 111 1134553 5567666665 99999999999999999999999999774 6777788887766
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHH
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYI 557 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi 557 (726)
+|+ ||. .+...+.+++++||-+.+.++.+.+.++-.. ++..............+.++.+.+....
T Consensus 152 ~AT-N~L----------PE~g~~leAL~DRFliri~vp~l~~~~~e~~----lL~~~~~~~~~~~~~~~vis~eel~~lq 216 (498)
T PRK13531 152 TAS-NEL----------PEADSSLEALYDRMLIRLWLDKVQDKANFRS----MLTSQQDENDNPVPASLQITDEEYQQWQ 216 (498)
T ss_pred EEC-CCC----------cccCCchHHhHhhEEEEEECCCCCchHHHHH----HHHcccccccCCCcccCCCCHHHHHHHH
Confidence 666 862 1133466799999966676666654332122 2222111000111113458888888877
Q ss_pred HHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 558 QYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 558 ~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
..+++ + .+++++.++|.+....+|+... ...+|+|....++++++|.|-+++|+.|+++|+..|.
T Consensus 217 ~~v~~-V--~v~d~v~eyI~~L~~~lr~~r~----------~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll~ 281 (498)
T PRK13531 217 KEIGK-I--TLPDHVFELIFQLRQQLDALPN----------APYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILLK 281 (498)
T ss_pred HHhcc-e--eCCHHHHHHHHHHHHHHhcCCC----------CCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHhH
Confidence 77654 3 5889999988887655553211 1238999999999999999999999999999999443
No 27
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.88 E-value=2.1e-21 Score=217.94 Aligned_cols=267 Identities=19% Similarity=0.214 Sum_probs=181.7
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecC---------CCchhh-----hccCceeecCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDG---------SSREFY-----LEGGAMVLADG 432 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~---------~~~~~~-----~~~G~l~la~~ 432 (726)
+.+|||.|++||||+++|++||..+++... ++..++|+...+. ..|.|. ..+|.+..|++
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~------pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g 308 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDF------PFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHR 308 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCC------CEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCC
Confidence 379999999999999999999998876422 3334444433221 011121 24567778999
Q ss_pred CeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-ee
Q 004862 433 GVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LI 511 (726)
Q Consensus 433 gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li 511 (726)
|++|||||+.||+..|..|+++++++.+ .+.|.....+.++++|+|+|.. .........|...|+.|++ +.
T Consensus 309 GTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~--~r~g~~~~~~~dvRiIaat~~~------l~~~v~~g~fr~dL~~rL~~~~ 380 (526)
T TIGR02329 309 GTLFLDEIGEMPLPLQTRLLRVLEEREV--VRVGGTEPVPVDVRVVAATHCA------LTTAVQQGRFRRDLFYRLSILR 380 (526)
T ss_pred ceEEecChHhCCHHHHHHHHHHHhcCcE--EecCCCceeeecceEEeccCCC------HHHHhhhcchhHHHHHhcCCcE
Confidence 9999999999999999999999999985 4667777788899999999953 2234556678899999998 88
Q ss_pred eEeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHH-------HHHHHHHH
Q 004862 512 FIVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAK-------LRDQYVQI 583 (726)
Q Consensus 512 ~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~-------l~~~y~~~ 583 (726)
+.+|+..++..| ..++.|++..+... ....+++++.+. |..|
T Consensus 381 I~lPPLReR~eDI~~L~~~fl~~~~~~--------------------------~~~~~~~~a~~~~~~~~~~L~~y---- 430 (526)
T TIGR02329 381 IALPPLRERPGDILPLAAEYLVQAAAA--------------------------LRLPDSEAAAQVLAGVADPLQRY---- 430 (526)
T ss_pred EeCCCchhchhHHHHHHHHHHHHHHHH--------------------------cCCCCCHHHHHHhHHHHHHHHhC----
Confidence 999999988777 66777776643211 112377788777 6665
Q ss_pred HHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH-HHhhhhhhhhhcCccccccccHHHHH
Q 004862 584 RKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR-LFTVSTMDAARSGINQQVNLTAEMAH 662 (726)
Q Consensus 584 R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~-l~~~s~~~~~~~~~~~~~~~~~~~~~ 662 (726)
+||+|+|+|+++++.+...+.......|+.+|+..... +...+ .........+...+.-
T Consensus 431 ---------------~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~~~~~~~~-----~~~~~~~~~l~~~~~~ 490 (526)
T TIGR02329 431 ---------------PWPGNVRELRNLVERLALELSAMPAGALTPDVLRALAPELAEAS-----GKGKTSALSLRERSRV 490 (526)
T ss_pred ---------------CCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhhchhhcccc-----cccccCccchHHHHHH
Confidence 79999999999999887665322345788888754321 00000 0000000011111222
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 004862 663 EIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALI 705 (726)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 705 (726)
+...|.+++++..++ ..+.|+.+||++.++.+.|+
T Consensus 491 Er~~I~~aL~~~~Gn--------~~~aA~~LGIsRtTL~Rklk 525 (526)
T TIGR02329 491 EALAVRAALERFGGD--------RDAAAKALGISRTTLWRRLK 525 (526)
T ss_pred HHHHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHh
Confidence 334456666655333 25668899999999999886
No 28
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.87 E-value=3.1e-21 Score=216.14 Aligned_cols=261 Identities=15% Similarity=0.168 Sum_probs=175.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHh--------CCCcEEeCCCCCCcccccceeeecC---------CCchhh-----hccC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT--------APIAVYTSGKGSSAAGLTASVIRDG---------SSREFY-----LEGG 425 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~--------~~~~~~~~g~~~~~~gl~~~~~~~~---------~~~~~~-----~~~G 425 (726)
.+|||.|++||||+++|++||.. +++... ++..++|+...+. ..|.|. ..+|
T Consensus 243 ~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~------pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~G 316 (538)
T PRK15424 243 AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSH------PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 316 (538)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCC------CeEEeecccCChhhHHHHhcCCccccccCccccccCC
Confidence 79999999999999999999998 554321 3444555443321 011111 2357
Q ss_pred ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh
Q 004862 426 AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL 505 (726)
Q Consensus 426 ~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll 505 (726)
.+..|++|++|||||+.|++..|..|+++++++.+. +.|.....+.++++|+|||.. .........|.+.|+
T Consensus 317 l~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~--r~G~~~~~~~dvRiIaat~~~------L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 317 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT--RVGGHQPVPVDVRVISATHCD------LEEDVRQGRFRRDLF 388 (538)
T ss_pred chhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEE--ecCCCceeccceEEEEecCCC------HHHHHhcccchHHHH
Confidence 788999999999999999999999999999999854 677777889999999999952 223455667889999
Q ss_pred cccC-eeeEeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHH-------HHH
Q 004862 506 SRFD-LIFIVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESAS-------AKL 576 (726)
Q Consensus 506 ~RFd-li~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~-------~~l 576 (726)
.|+. +.+.+|+..++..| ..++.|++..+... ....+++++. +.|
T Consensus 389 yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~--------------------------~~~~~~~~a~~~~~~a~~~L 442 (538)
T PRK15424 389 YRLSILRLQLPPLRERVADILPLAESFLKQSLAA--------------------------LSAPFSAALRQGLQQCETLL 442 (538)
T ss_pred HHhcCCeecCCChhhchhHHHHHHHHHHHHHHHH--------------------------cCCCCCHHHHHhhHHHHHHH
Confidence 9998 78888998888777 56777766643221 1112555554 555
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCccccccc
Q 004862 577 RDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNL 656 (726)
Q Consensus 577 ~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~ 656 (726)
..| +||+|+|+|+++++.+..++.-.....++.+++.... . .. ...... .
T Consensus 443 ~~y-------------------~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~~~~---~-~~----~~~~~~---~ 492 (538)
T PRK15424 443 LHY-------------------DWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQLLL---P-EL----ARESAK---T 492 (538)
T ss_pred HhC-------------------CCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhhhhc---c-cc----cccccc---c
Confidence 555 7999999999999987765432223456666653211 0 00 000000 0
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 657 TAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
... ..+...|.+++++..++ ..+.|+.+||++.++.+.|++|
T Consensus 493 ~~~-~~Er~~I~~~L~~~~Gn--------~~~aA~~LGIsRtTL~RkLk~~ 534 (538)
T PRK15424 493 PAP-RLLAATLQQALERFNGD--------KTAAANYLGISRTTLWRRLKAE 534 (538)
T ss_pred chh-HHHHHHHHHHHHHhCCC--------HHHHHHHhCCCHHHHHHHHHHh
Confidence 111 12334456666655433 2556888999999999988876
No 29
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.87 E-value=2.9e-21 Score=206.40 Aligned_cols=273 Identities=15% Similarity=0.147 Sum_probs=176.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecC-------------CCchhhhccCceeecCCCe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDG-------------SSREFYLEGGAMVLADGGV 434 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~-------------~~~~~~~~~G~l~la~~gv 434 (726)
.+|||+|++||||+++|++||..+++... ++.-+.|+...+. .++......|.+..|++|+
T Consensus 30 ~pVlI~GE~GtGK~~lA~~iH~~s~r~~~------pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGt 103 (326)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSSRWQG------PFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGT 103 (326)
T ss_pred CCEEEECCCCCcHHHHHHHHHHhCCccCC------CeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCe
Confidence 79999999999999999999998875311 1222222221110 1111112357788899999
Q ss_pred EEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeE
Q 004862 435 VCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFI 513 (726)
Q Consensus 435 l~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~ 513 (726)
+||||++.|++..|..|+.+++++.+. +.|.....+.+++||+++|.. .........+.+.|++||. +.+.
T Consensus 104 L~l~~i~~L~~~~Q~~L~~~l~~~~~~--~~g~~~~~~~~~RiI~~s~~~------l~~l~~~g~f~~dL~~~l~~~~i~ 175 (326)
T PRK11608 104 LFLDELATAPMLVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNAD------LPAMVAEGKFRADLLDRLAFDVVQ 175 (326)
T ss_pred EEeCChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCchh------HHHHHHcCCchHHHHHhcCCCEEE
Confidence 999999999999999999999998843 556666778899999999852 2234456678899999995 7888
Q ss_pred eccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 514 VKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 514 l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
+|+..++..| ..++.|++....... ...+.|.+++++.+.|..|
T Consensus 176 lPpLReR~eDI~~L~~~fl~~~~~~~----------------------~~~~~~~~s~~al~~L~~y------------- 220 (326)
T PRK11608 176 LPPLRERQSDIMLMAEHFAIQMCREL----------------------GLPLFPGFTERARETLLNY------------- 220 (326)
T ss_pred CCChhhhhhhHHHHHHHHHHHHHHHh----------------------CCCCCCCCCHHHHHHHHhC-------------
Confidence 9999888777 566666665432111 1112357999999999998
Q ss_pred ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHH-HHHHHhhhhhh-hhhc-Cccccc--cccHH-HHHHHHH
Q 004862 593 ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNE-AVRLFTVSTMD-AARS-GINQQV--NLTAE-MAHEIKQ 666 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~-ai~l~~~s~~~-~~~~-~~~~~~--~~~~~-~~~~~~~ 666 (726)
+||+|+|+|+++++.+...+. .+.++.+|+.. +.. ....... .... ...... .+... +..+...
T Consensus 221 ------~WPGNvrEL~~vl~~a~~~~~---~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Er~~ 290 (326)
T PRK11608 221 ------RWPGNIRELKNVVERSVYRHG---TSEYPLDNIIIDPFK-RRPAEEAIAVSETTSLPTLPLDLREWQHQQEKEL 290 (326)
T ss_pred ------CCCcHHHHHHHHHHHHHHhcC---CCCCchhhccccccc-ccccccccccccccccccccccHHHHHHHHHHHH
Confidence 799999999999998876543 33444444310 000 0000000 0000 000000 11110 1222334
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 667 AETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
|.+++++..++ ..+.|+.+||++.++.++|++|
T Consensus 291 I~~aL~~~~gn--------~~~aA~~LGIsR~tLyrklk~~ 323 (326)
T PRK11608 291 LQRSLQQAKFN--------QKRAAELLGLTYHQLRALLKKH 323 (326)
T ss_pred HHHHHHHhCCC--------HHHHHHHhCCCHHHHHHHHHHc
Confidence 55666654332 3566888999999999988875
No 30
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.86 E-value=2.3e-20 Score=196.37 Aligned_cols=269 Identities=19% Similarity=0.203 Sum_probs=190.0
Q ss_pred hhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCC------C-
Q 004862 331 KIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGS------S- 403 (726)
Q Consensus 331 si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~------~- 403 (726)
..+..|.|++.+|++|++..+.-. - -.+||-|+.|||||+++|+++.++|....+.|... +
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~-----i-------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQ-----I-------GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccc-----c-------ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 356679999999999999854321 0 36999999999999999999999997654433311 0
Q ss_pred ------------------------cccccceeeecC-----------CCchhhhccCceeecCCCeEEecccCcCCHHHH
Q 004862 404 ------------------------AAGLTASVIRDG-----------SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDR 448 (726)
Q Consensus 404 ------------------------~~gl~~~~~~~~-----------~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~ 448 (726)
++++--....|. ..+.-.++||.|..||+||+++||++.++...+
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 111111111110 124556789999999999999999999999999
Q ss_pred HHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHH
Q 004862 449 VAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIAS 528 (726)
Q Consensus 449 ~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~ 528 (726)
+.||.+++.|.-.+.+.|+...+|++|.+|||+||..|. |.++|++||.+.+.+-.+.+.+.-..|.+
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGe------------LrpqLlDRfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGE------------LRPQLLDRFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccc------------cchhhHhhhcceeeccCCCCHHHHHHHHH
Confidence 999999999877788999999999999999999997554 89999999999998877776554455555
Q ss_pred HHHHHhhhcccccccccccCCHHHHHHHHHHhHccC-CCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHH
Q 004862 529 HIIKIHASADAVSADSKVSKEENWLKRYIQYCRLEC-HPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQL 607 (726)
Q Consensus 529 ~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~-~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L 607 (726)
+.+.... .+...-....-....|+.-+.-|++.+ ...+++++...+......+ .. -+.|.-
T Consensus 230 r~~~f~~--~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~---------------~v-~g~rad 291 (423)
T COG1239 230 RRLAFEA--VPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARL---------------AV-DGHRAD 291 (423)
T ss_pred HHHHhhc--CcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHh---------------cc-CCCchh
Confidence 4444311 000000000001223443333344321 2356777777777663321 11 236888
Q ss_pred HHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhh
Q 004862 608 EAIVRLSEALAKMKLSHVATENEVNEAVRLFTVS 641 (726)
Q Consensus 608 ~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 641 (726)
..++|.|.++|-+.++.+|+.+|+.+|..+....
T Consensus 292 i~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~h 325 (423)
T COG1239 292 IVVVRAAKALAALRGRTEVEEEDIREAAELALLH 325 (423)
T ss_pred hHHHHHHHHHHHhcCceeeehhhHHHHHhhhhhh
Confidence 8999999999999999999999999999877543
No 31
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.86 E-value=4e-21 Score=224.47 Aligned_cols=269 Identities=12% Similarity=0.136 Sum_probs=182.4
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecC---------C-CchhhhccCceeecCCCeEE
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDG---------S-SREFYLEGGAMVLADGGVVC 436 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~---------~-~~~~~~~~G~l~la~~gvl~ 436 (726)
+.+|||.|++||||+++|++||..+++... ++..++|+...+. . .....-.+|.+..|++|++|
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~------pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAG------PYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCC------CeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 378999999999999999999998875321 2222333322210 0 00111235678899999999
Q ss_pred ecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeEec
Q 004862 437 IDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVK 515 (726)
Q Consensus 437 iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~ 515 (726)
||||+.|+++.|..|+++++++.++ +.|.....+.++++|+|||.. .........|.+.|+.|+. +.+.+|
T Consensus 422 ldei~~l~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~t~~~------l~~~~~~~~f~~dL~~~l~~~~i~lP 493 (638)
T PRK11388 422 LEKVEYLSPELQSALLQVLKTGVIT--RLDSRRLIPVDVRVIATTTAD------LAMLVEQNRFSRQLYYALHAFEITIP 493 (638)
T ss_pred EcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceEEeeEEEEEeccCC------HHHHHhcCCChHHHhhhhceeEEeCC
Confidence 9999999999999999999999854 666666778899999999953 2234455678899999998 778889
Q ss_pred cCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhccc
Q 004862 516 DIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANET 594 (726)
Q Consensus 516 d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~ 594 (726)
+..++..| ..++.+++...... .. ..+.+++++.+.|.+|
T Consensus 494 pLreR~~Di~~L~~~~l~~~~~~----------------------~~--~~~~~s~~a~~~L~~y--------------- 534 (638)
T PRK11388 494 PLRMRREDIPALVNNKLRSLEKR----------------------FS--TRLKIDDDALARLVSY--------------- 534 (638)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHH----------------------hC--CCCCcCHHHHHHHHcC---------------
Confidence 88887656 56666665532110 11 1346999999999998
Q ss_pred CCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHh
Q 004862 595 GEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRR 674 (726)
Q Consensus 595 ~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (726)
+||+|+|+|+++++.+...+. ...|+.+|+...+.. ..+.. ............-+..+...|.+++++.
T Consensus 535 ----~WPGNvreL~~~l~~~~~~~~---~~~i~~~~lp~~~~~-~~~~~---~~~~~~~~~~~~l~~~E~~~i~~al~~~ 603 (638)
T PRK11388 535 ----RWPGNDFELRSVIENLALSSD---NGRIRLSDLPEHLFT-EQATD---DVSATRLSTSLSLAELEKEAIINAAQVC 603 (638)
T ss_pred ----CCCChHHHHHHHHHHHHHhCC---CCeecHHHCchhhhc-ccccc---cccccccccchhHHHHHHHHHHHHHHHh
Confidence 799999999999998776543 557999998876631 00000 0000000000011222334456666655
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 675 IPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 675 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
.++ ..+.|+.+||++.++.++|++|
T Consensus 604 ~gn--------~~~aA~~LGisR~TLyrklk~~ 628 (638)
T PRK11388 604 GGR--------IQEMAALLGIGRTTLWRKMKQH 628 (638)
T ss_pred CCC--------HHHHHHHHCCCHHHHHHHHHHc
Confidence 332 3566888999999999888765
No 32
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.86 E-value=1.8e-21 Score=213.46 Aligned_cols=254 Identities=17% Similarity=0.236 Sum_probs=185.7
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecC--CCchhhhcc------------Cceeec
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDG--SSREFYLEG------------GAMVLA 430 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~--~~~~~~~~~------------G~l~la 430 (726)
+.++++|+.|+|||||..++|++|..+. .-. .++.++|+.+++. ++.-|.+.+ |.+.+|
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~-~~g------pfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A 406 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSE-AAG------PFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQA 406 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhccc-ccC------CeEEEEeccchHHhhhHHHhccCccccccchhccccccceec
Confidence 4558999999999999999999998876 211 4556677666553 112233333 455789
Q ss_pred CCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-
Q 004862 431 DGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD- 509 (726)
Q Consensus 431 ~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd- 509 (726)
++|++|+|||..||.+.|..|++++++++|. ..|... .+.+++||+||+ .+...++.+..|.+.|++|..
T Consensus 407 ~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~--p~g~~~-~~vdirvi~ath------~dl~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 407 DGGTLFLDEIGDMPLALQSRLLRVLQEGVVT--PLGGTR-IKVDIRVIAATH------RDLAQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred CCCccHHHHhhhchHHHHHHHHHHHhhCcee--ccCCcc-eeEEEEEEeccC------cCHHHHHHcCCchHHHHHHhcC
Confidence 9999999999999999999999999999965 777777 899999999999 445578888999999999998
Q ss_pred eeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 004862 510 LIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRR 589 (726)
Q Consensus 510 li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~ 589 (726)
+.+.+|+..++..+..+-.+++..+.. -.-.|++++...|..|
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~---------------------------~~~~l~~~~~~~l~~~---------- 520 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKREND---------------------------WRLQLDDDALARLLAY---------- 520 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccC---------------------------CCccCCHHHHHHHHhC----------
Confidence 888888888776666655555543321 1125899999999988
Q ss_pred hhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHH
Q 004862 590 QANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAET 669 (726)
Q Consensus 590 ~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (726)
.||+|+|+|.++++.+.+++. ...|...|+...+.--..+. ....+. ..++.
T Consensus 521 ---------~WPGNirel~~v~~~~~~l~~---~g~~~~~dlp~~l~~~~~~~-------------~~~~~~---~~l~~ 572 (606)
T COG3284 521 ---------RWPGNIRELDNVIERLAALSD---GGRIRVSDLPPELLEEQATP-------------REDIEK---AALLA 572 (606)
T ss_pred ---------CCCCcHHHHHHHHHHHHHcCC---CCeeEcccCCHHHHhhhccc-------------ccchHH---HHHHH
Confidence 799999999999988776654 66788888887653211110 111122 23344
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 670 QIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
++....++ +-+.++.+||+++++++.|+++
T Consensus 573 al~~~~~~--------is~aa~~lgi~R~T~yrklk~~ 602 (606)
T COG3284 573 ALQATNGN--------ISEAARLLGISRSTLYRKLKRH 602 (606)
T ss_pred HHHHcCCC--------HHHHHHHhCCCHHHHHHHHHHh
Confidence 44433221 4566788888888888887765
No 33
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.86 E-value=8.3e-21 Score=215.17 Aligned_cols=297 Identities=17% Similarity=0.210 Sum_probs=192.6
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 413 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~ 413 (726)
..|+|+...-+.+.-.+..- -..+.+|||+|++||||+.+|+++|..+++.-. ++..++|+...
T Consensus 187 ~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~------p~v~v~c~~~~ 250 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADK------PLVYLNCAALP 250 (509)
T ss_pred CceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCC------CeEEEEcccCC
Confidence 35778765544443333211 012379999999999999999999999875421 22222332221
Q ss_pred c-------------CCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEe
Q 004862 414 D-------------GSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAA 480 (726)
Q Consensus 414 ~-------------~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa 480 (726)
+ ..++...-..|.+..|+||++|||||+.|+++.|..|+++++++.+ .+.|.....+.++++||+
T Consensus 251 ~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiI~~ 328 (509)
T PRK05022 251 ESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEI--QRVGSDRSLRVDVRVIAA 328 (509)
T ss_pred hHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCE--eeCCCCcceecceEEEEe
Confidence 1 1111112245677889999999999999999999999999999885 466666677889999999
Q ss_pred cCCCCCcCCCccchhhhccCchhhhcccC-eeeEeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHH
Q 004862 481 ANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQ 558 (726)
Q Consensus 481 ~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~ 558 (726)
||.. .........|...|++|+. +.+.+|+..++..| ..++.|++.......
T Consensus 329 t~~~------l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~-------------------- 382 (509)
T PRK05022 329 TNRD------LREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARL-------------------- 382 (509)
T ss_pred cCCC------HHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHc--------------------
Confidence 9952 2234556679999999998 56888999888777 566666665432111
Q ss_pred HhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCC---cccHHHHHHHH
Q 004862 559 YCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSH---VATENEVNEAV 635 (726)
Q Consensus 559 ~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~---~V~~~Dv~~ai 635 (726)
.+ -.+.++++|.+.|..| +||+|+|+|+++++.|...|.-...+ .|+.+|+....
T Consensus 383 -~~--~~~~~s~~a~~~L~~y-------------------~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~~~~ 440 (509)
T PRK05022 383 -GL--RSLRLSPAAQAALLAY-------------------DWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLPA 440 (509)
T ss_pred -CC--CCCCCCHHHHHHHHhC-------------------CCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcCccc
Confidence 00 2357999999999998 79999999999999988777632211 46676665321
Q ss_pred HHHhhhhhhhhhcCcc---ccccccH-HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 636 RLFTVSTMDAARSGIN---QQVNLTA-EMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 636 ~l~~~s~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
.. ........... ....+.. .+..+...|.+++++..++ ..+.|+.+||++.++.++|++|
T Consensus 441 ~~---~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~~aL~~~~gn--------~~~aA~~LGisr~tL~rklk~~ 505 (509)
T PRK05022 441 EV---ALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQHQGN--------WAAAARALELDRANLHRLAKRL 505 (509)
T ss_pred cc---ccCccccccccccccccCHHHHHHHHHHHHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHHHc
Confidence 00 00000000000 0001111 1122334456666655332 2466888999999999988876
No 34
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.86 E-value=1.2e-20 Score=213.81 Aligned_cols=206 Identities=18% Similarity=0.221 Sum_probs=151.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecC-------------CCchhhhccCceeecCCCe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDG-------------SSREFYLEGGAMVLADGGV 434 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~-------------~~~~~~~~~G~l~la~~gv 434 (726)
.+|||+|++||||+++|++||..+.+... ++..++|+...+. .++......|.+..|++|+
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~------pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~Gt 301 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKK------PFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGS 301 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCC------CeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCE
Confidence 78999999999999999999998876421 2223333332211 0111112356677899999
Q ss_pred EEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeE
Q 004862 435 VCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFI 513 (726)
Q Consensus 435 l~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~ 513 (726)
+|||||+.|++..|..|+++++++.+ .+.|.....+.+++||+||+.. .....+...+.+.|++|+. +.+.
T Consensus 302 L~LdeI~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~vRiI~st~~~------l~~l~~~g~f~~dL~~rL~~~~i~ 373 (520)
T PRK10820 302 VLLDEIGEMSPRMQAKLLRFLNDGTF--RRVGEDHEVHVDVRVICATQKN------LVELVQKGEFREDLYYRLNVLTLN 373 (520)
T ss_pred EEEeChhhCCHHHHHHHHHHHhcCCc--ccCCCCcceeeeeEEEEecCCC------HHHHHHcCCccHHHHhhcCeeEEe
Confidence 99999999999999999999999874 4666666677889999999842 2244566678899999987 7888
Q ss_pred eccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 514 VKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 514 l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
+|+..++..| ..++.+++....... ..-.|.+++++.+.|..|
T Consensus 374 lPpLreR~~Di~~L~~~fl~~~~~~~-----------------------g~~~~~ls~~a~~~L~~y------------- 417 (520)
T PRK10820 374 LPPLRDRPQDIMPLTELFVARFADEQ-----------------------GVPRPKLAADLNTVLTRY------------- 417 (520)
T ss_pred CCCcccChhHHHHHHHHHHHHHHHHc-----------------------CCCCCCcCHHHHHHHhcC-------------
Confidence 9998887766 456666655432111 112467999999999988
Q ss_pred ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 004862 593 ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN 632 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~ 632 (726)
+||+|+|+|+++++.|...+. ...++.+|+.
T Consensus 418 ------~WPGNvreL~nvl~~a~~~~~---~~~i~~~~~~ 448 (520)
T PRK10820 418 ------GWPGNVRQLKNAIYRALTQLE---GYELRPQDIL 448 (520)
T ss_pred ------CCCCHHHHHHHHHHHHHHhCC---CCcccHHHcC
Confidence 799999999999988776554 5678888863
No 35
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-20 Score=201.05 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=164.5
Q ss_pred HHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCc
Q 004862 325 YKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSA 404 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~ 404 (726)
-..+.++....++|...--+.++-++-. -.++| .|||+.|++||||+.+|+.||..+.+. ...++
T Consensus 69 ~~~~~~~~~~~LIG~~~~~~~~~eqik~----~ap~~------~~vLi~GetGtGKel~A~~iH~~s~r~-----~~~PF 133 (403)
T COG1221 69 RPYLKSEALDDLIGESPSLQELREQIKA----YAPSG------LPVLIIGETGTGKELFARLIHALSARR-----AEAPF 133 (403)
T ss_pred hhhccchhhhhhhccCHHHHHHHHHHHh----hCCCC------CcEEEecCCCccHHHHHHHHHHhhhcc-----cCCCE
Confidence 3445556667777764433322222211 11223 899999999999999999999877663 12245
Q ss_pred ccccceeeecC-------------CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEe
Q 004862 405 AGLTASVIRDG-------------SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVL 471 (726)
Q Consensus 405 ~gl~~~~~~~~-------------~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l 471 (726)
+.++|+...+. .+|...-.+|.+..|+||+||+|||..||+..|+.|+.+||+|++ .+.|.....
T Consensus 134 I~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~--~rvG~~~~~ 211 (403)
T COG1221 134 IAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEY--RRVGGSQPR 211 (403)
T ss_pred EEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCce--EecCCCCCc
Confidence 55666544332 345455677888999999999999999999999999999999995 477888889
Q ss_pred eCceEEEEecCCCCCcCCCccchhhhccCchhhhc-ccCeeeEeccCCChhhh-HHHHHHHHHHhhhcccccccccccCC
Q 004862 472 NSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS-RFDLIFIVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKE 549 (726)
Q Consensus 472 ~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~-RFdli~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~ 549 (726)
++++++|+|||-..+ +.+.--..|++ |+.+++.+|+...+..| ..+++|++.........
T Consensus 212 ~~dVRli~AT~~~l~---------~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~--------- 273 (403)
T COG1221 212 PVDVRLICATTEDLE---------EAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGL--------- 273 (403)
T ss_pred CCCceeeeccccCHH---------HHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCC---------
Confidence 999999999994211 11111146777 78899999999888767 56777777765443221
Q ss_pred HHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhh
Q 004862 550 ENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMK 621 (726)
Q Consensus 550 ~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~ 621 (726)
-.+..+++|...|..| +||+|+|+|+++|+.+.+.+...
T Consensus 274 --------------~~~~~~~~a~~~L~~y-------------------~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 274 --------------PLSVDSPEALRALLAY-------------------DWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred --------------CCCCCCHHHHHHHHhC-------------------CCCCcHHHHHHHHHHHHHHhccc
Confidence 1234567899999988 79999999999999999988643
No 36
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.85 E-value=2.7e-20 Score=212.90 Aligned_cols=207 Identities=20% Similarity=0.289 Sum_probs=152.8
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec-------------CCCchhhhccCceeecCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD-------------GSSREFYLEGGAMVLADGG 433 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~-------------~~~~~~~~~~G~l~la~~g 433 (726)
+.+|||+||+||||+++|++||..+++... ++.-++|+...+ ..++.....+|.+..+++|
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~------pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~G 292 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKR------PFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGG 292 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCC------CeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCC
Confidence 379999999999999999999998875311 222222222111 0111112245667889999
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eee
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIF 512 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~ 512 (726)
++|||||+.|++..|..|+++++++.+. +.|.....+.++++|+|+|.. .........|.+.|++|++ +.+
T Consensus 293 tL~ldei~~L~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~s~~~------l~~~~~~~~f~~~L~~rl~~~~i 364 (534)
T TIGR01817 293 TLFLDEIGEISPAFQAKLLRVLQEGEFE--RVGGNRTLKVDVRLVAATNRD------LEEAVAKGEFRADLYYRINVVPI 364 (534)
T ss_pred eEEEechhhCCHHHHHHHHHHHhcCcEE--ECCCCceEeecEEEEEeCCCC------HHHHHHcCCCCHHHHHHhcCCee
Confidence 9999999999999999999999998854 555556677889999999853 1234456678999999998 578
Q ss_pred EeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 513 IVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 513 ~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
.+|+..++.+| ..|+.+++...... +. ..+.+++++.+.|..|
T Consensus 365 ~lPpLreR~eDi~~L~~~~l~~~~~~---------------------~~---~~~~~s~~a~~~L~~~------------ 408 (534)
T TIGR01817 365 FLPPLRERREDIPLLAEAFLEKFNRE---------------------NG---RPLTITPSAIRVLMSC------------ 408 (534)
T ss_pred eCCCcccccccHHHHHHHHHHHHHHH---------------------cC---CCCCCCHHHHHHHHhC------------
Confidence 88888887666 46777766543211 01 1257999999999998
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHH
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNE 633 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ 633 (726)
+||+|+|+|+++++.+...+. ...|+.+|+..
T Consensus 409 -------~WPGNvrEL~~v~~~a~~~~~---~~~I~~~~l~~ 440 (534)
T TIGR01817 409 -------KWPGNVRELENCLERTATLSR---SGTITRSDFSC 440 (534)
T ss_pred -------CCCChHHHHHHHHHHHHHhCC---CCcccHHHCch
Confidence 799999999999998776554 66899999864
No 37
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.85 E-value=3.3e-20 Score=199.40 Aligned_cols=288 Identities=17% Similarity=0.269 Sum_probs=194.5
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCccccccee
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASV 411 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~ 411 (726)
+.+++|++.+++.+...+...... + ....|+||+||||||||++|+++++.....+.. .+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~----~---~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~---------- 86 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR----G---EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPA---------- 86 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc----C---CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccc----------
Confidence 345789999999887666532100 0 122589999999999999999999987654432 1110
Q ss_pred eecCCCchhhhccCce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEee--eccceE----EEeeCceEEEEecCCC
Q 004862 412 IRDGSSREFYLEGGAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISI--AKAGIT----TVLNSRTSVLAAANPP 484 (726)
Q Consensus 412 ~~~~~~~~~~~~~G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i--~~~g~~----~~l~~~~~iiaa~Np~ 484 (726)
... .+... +.+ .+..++++|||||+.++...++.|+.+|++..+.+ ..+... ..++ ++.+|+|+|+.
T Consensus 87 ~~~--~~~l~---~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~ 160 (328)
T PRK00080 87 LEK--PGDLA---AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRA 160 (328)
T ss_pred ccC--hHHHH---HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCc
Confidence 000 00000 000 13467899999999999999999999999876532 111111 1223 47888999853
Q ss_pred CCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccC
Q 004862 485 SGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLEC 564 (726)
Q Consensus 485 ~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~ 564 (726)
. .++++|.+||.+++.+..+...+ +.+++...-...
T Consensus 161 ~-------------~l~~~L~sRf~~~~~l~~~~~~e-------------------------------~~~il~~~~~~~ 196 (328)
T PRK00080 161 G-------------LLTSPLRDRFGIVQRLEFYTVEE-------------------------------LEKIVKRSARIL 196 (328)
T ss_pred c-------------cCCHHHHHhcCeeeecCCCCHHH-------------------------------HHHHHHHHHHHc
Confidence 1 26788999999888776554222 222222211123
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhh
Q 004862 565 HPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMD 644 (726)
Q Consensus 565 ~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~ 644 (726)
...+++++.+.|... ..+++|.+..+++.+...|.......|+.+++..++..+..
T Consensus 197 ~~~~~~~~~~~ia~~--------------------~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~---- 252 (328)
T PRK00080 197 GVEIDEEGALEIARR--------------------SRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGV---- 252 (328)
T ss_pred CCCcCHHHHHHHHHH--------------------cCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC----
Confidence 446899999888875 34788999999998888887776778999999999865432
Q ss_pred hhhcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH-HHHHCCeEEEecCCeEEE
Q 004862 645 AARSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALI-IMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~g~~~~ 723 (726)
+..+++..+...+ ..+.+.+. +..++.+++ +..+|.+..++++.++ .|.+.|+|..+.+||++|
T Consensus 253 -------~~~~l~~~~~~~l----~~~~~~~~-~~~~~~~~~---a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr~~~ 317 (328)
T PRK00080 253 -------DELGLDEMDRKYL----RTIIEKFG-GGPVGLDTL---AAALGEERDTIEDVYEPYLIQQGFIQRTPRGRVAT 317 (328)
T ss_pred -------CcCCCCHHHHHHH----HHHHHHcC-CCceeHHHH---HHHHCCCcchHHHHhhHHHHHcCCcccCCchHHHH
Confidence 1123444444443 33333322 346788887 7888999999999999 999999999999999998
Q ss_pred ecC
Q 004862 724 RKV 726 (726)
Q Consensus 724 ~~~ 726 (726)
++|
T Consensus 318 ~~~ 320 (328)
T PRK00080 318 PKA 320 (328)
T ss_pred HHH
Confidence 764
No 38
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.83 E-value=7.8e-20 Score=206.66 Aligned_cols=274 Identities=17% Similarity=0.206 Sum_probs=183.5
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec-------------CCCchhhhccCceeecCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD-------------GSSREFYLEGGAMVLADGG 433 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~-------------~~~~~~~~~~G~l~la~~g 433 (726)
+.++|+.|++||||+++|+++|..+++... ++..+.|+...+ ..++......|.+..++||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~------~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKA------PFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCC------CeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 479999999999999999999998875321 222222222111 0112222346778899999
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eee
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIF 512 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~ 512 (726)
++||||++.|++..|..|+++++++.+. +.|.....+.++++|+|++.. .....+...+.+.|++||. +.+
T Consensus 235 tl~l~~i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~------l~~~~~~~~~~~~L~~~l~~~~i 306 (469)
T PRK10923 235 TLFLDEIGDMPLDVQTRLLRVLADGQFY--RVGGYAPVKVDVRIIAATHQN------LEQRVQEGKFREDLFHRLNVIRV 306 (469)
T ss_pred EEEEeccccCCHHHHHHHHHHHhcCcEE--eCCCCCeEEeeEEEEEeCCCC------HHHHHHcCCchHHHHHHhcceee
Confidence 9999999999999999999999999854 555555667789999999852 2234456678999999996 888
Q ss_pred EeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 513 IVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 513 ~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
.+|+..++..| ..++.|++..+..... .-.+.++++|.+.|..|
T Consensus 307 ~~PpLreR~~Di~~l~~~~l~~~~~~~~-----------------------~~~~~~~~~a~~~L~~~------------ 351 (469)
T PRK10923 307 HLPPLRERREDIPRLARHFLQVAARELG-----------------------VEAKLLHPETEAALTRL------------ 351 (469)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHcC-----------------------CCCCCcCHHHHHHHHhC------------
Confidence 89999988777 5677776654322110 01236999999999998
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhh--hhcC-----------cccc---cc
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDA--ARSG-----------INQQ---VN 655 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~--~~~~-----------~~~~---~~ 655 (726)
+||+|+|+|+++++.+...+. ...|+.+|+...+.......... .... .... ..
T Consensus 352 -------~wpgNv~eL~~~i~~~~~~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (469)
T PRK10923 352 -------AWPGNVRQLENTCRWLTVMAA---GQEVLIQDLPGELFESTVPESTSQMQPDSWATLLAQWADRALRSGHQNL 421 (469)
T ss_pred -------CCCChHHHHHHHHHHHHHhCC---CCcccHHHCcHhhhccccccccccccccccccccccccccccccccchh
Confidence 799999999999998876665 66899999875543210000000 0000 0000 00
Q ss_pred ccH-HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 656 LTA-EMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 656 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
+.. -+..+...|..++++..++ ..+.|+.+||++.+++++|++|
T Consensus 422 l~~~l~~~E~~~i~~aL~~~~gn--------~~~aA~~Lgisr~tL~rkl~~~ 466 (469)
T PRK10923 422 LSEAQPELERTLLTTALRHTQGH--------KQEAARLLGWGRNTLTRKLKEL 466 (469)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHhCCCHHHHHHHHHHh
Confidence 001 1112233455556654333 3566888999999999998876
No 39
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.83 E-value=2.3e-19 Score=202.97 Aligned_cols=242 Identities=15% Similarity=0.202 Sum_probs=179.3
Q ss_pred chhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC--cEEeCCCCCCcccccceeeec--
Q 004862 339 HDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI--AVYTSGKGSSAAGLTASVIRD-- 414 (726)
Q Consensus 339 ~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~--~~~~~g~~~~~~gl~~~~~~~-- 414 (726)
++.+|.|++|..+.... + -.|||.|++|||||++++.++.++|. .+.....+.+...|.++.--+
T Consensus 8 ~~~~~~Al~l~av~p~~--------~---gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPAG--------L---GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCccc--------c---ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 78999999988875411 0 25999999999999999999999886 222222333333333322000
Q ss_pred CCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccch
Q 004862 415 GSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSA 494 (726)
Q Consensus 415 ~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~ 494 (726)
-..|....++|.+.+||+|||||||++.+++..++.|+++||+|.+++.+.|.+.++|++|.+||+.|+.
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~---------- 146 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA---------- 146 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh----------
Confidence 0134445789999999999999999999999999999999999999999999999999999999987753
Q ss_pred hhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHcc-CCCCCCHHHH
Q 004862 495 QDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLE-CHPRLSESAS 573 (726)
Q Consensus 495 ~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~-~~p~ls~ea~ 573 (726)
.+...++++|++||+|.+.+......+... ...+.+.+.+ |+.. -...++++..
T Consensus 147 ~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~---------------------~~~~~~~I~~----AR~rl~~v~v~~~~l 201 (584)
T PRK13406 147 EEDERAPAALADRLAFHLDLDGLALRDARE---------------------IPIDADDIAA----ARARLPAVGPPPEAI 201 (584)
T ss_pred hcccCCCHHhHhheEEEEEcCCCChHHhcc---------------------cCCCHHHHHH----HHHHHccCCCCHHHH
Confidence 122459999999999999998776443210 0111111111 2211 1235788888
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCccC-ChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhh
Q 004862 574 AKLRDQYVQIRKDMRRQANETGEAAPIPI-TVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTM 643 (726)
Q Consensus 574 ~~l~~~y~~~R~~~~~~~~~~~~~~~~~~-t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~ 643 (726)
+++...+.. ..+ +.|....++|.|+++|.|++++.|+++||.+|..+......
T Consensus 202 ~~i~~~~~~-----------------~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~ 255 (584)
T PRK13406 202 AALCAAAAA-----------------LGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRA 255 (584)
T ss_pred HHHHHHHHH-----------------hCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhc
Confidence 777765432 334 89999999999999999999999999999999998876544
No 40
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.83 E-value=1.2e-19 Score=203.76 Aligned_cols=264 Identities=16% Similarity=0.216 Sum_probs=180.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec-------------CCCchhhhccCceeecCCCe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD-------------GSSREFYLEGGAMVLADGGV 434 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~-------------~~~~~~~~~~G~l~la~~gv 434 (726)
.+++|.|++||||+++|+++|..+++... ++..+.|+...+ ..++.....+|.+..|+||+
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~------~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDK------RFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGT 236 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCC------CeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCE
Confidence 78999999999999999999998875321 122222222111 11222233467788999999
Q ss_pred EEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeE
Q 004862 435 VCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFI 513 (726)
Q Consensus 435 l~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~ 513 (726)
+||||++.|++..|..|+++++++.+ .+.|.....+.++++|+|+|.. .........+.+.|+.|+. +.+.
T Consensus 237 l~l~~i~~l~~~~q~~l~~~l~~~~~--~~~~~~~~~~~~~rii~~~~~~------l~~~~~~~~~~~~L~~~l~~~~i~ 308 (445)
T TIGR02915 237 LFLDEIGDLPLNLQAKLLRFLQERVI--ERLGGREEIPVDVRIVCATNQD------LKRMIAEGTFREDLFYRIAEISIT 308 (445)
T ss_pred EEEechhhCCHHHHHHHHHHHhhCeE--EeCCCCceeeeceEEEEecCCC------HHHHHHcCCccHHHHHHhccceec
Confidence 99999999999999999999999985 4566666778899999999953 1233455668889999987 7888
Q ss_pred eccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 514 VKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 514 l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
+|+..++..| ..++.+++....... . .-.+.+++++.+.|..|
T Consensus 309 lPpLr~R~~Di~~l~~~~l~~~~~~~---------------------~--~~~~~~~~~a~~~L~~~------------- 352 (445)
T TIGR02915 309 IPPLRSRDGDAVLLANAFLERFAREL---------------------K--RKTKGFTDDALRALEAH------------- 352 (445)
T ss_pred CCCchhchhhHHHHHHHHHHHHHHHh---------------------C--CCCCCCCHHHHHHHHhC-------------
Confidence 8988888766 566666655432111 1 12347999999999998
Q ss_pred ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCccccccccH-HHHHHHHHHHHHH
Q 004862 593 ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLTA-EMAHEIKQAETQI 671 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 671 (726)
+||+|+|+|+++++.|...+. ...++.+|+.. ... . ..... ....+.. .+..+...|..++
T Consensus 353 ------~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l~~-----~~~--~-~~~~~-~~~~l~~~~~~~E~~~i~~al 414 (445)
T TIGR02915 353 ------AWPGNVRELENKVKRAVIMAE---GNQITAEDLGL-----DAR--E-RAETP-LEVNLREVRERAEREAVRKAI 414 (445)
T ss_pred ------CCCChHHHHHHHHHHHHHhCC---CCcccHHHcCC-----ccc--c-ccccc-cccCHHHHHHHHHHHHHHHHH
Confidence 799999999999998876554 56788887651 000 0 00000 0001111 1122234455666
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 672 KRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
++..++ ..+.|+.+||++.++++.|++|
T Consensus 415 ~~~~gn--------~~~aA~~Lgisr~tl~rkl~~~ 442 (445)
T TIGR02915 415 ARVDGN--------IARAAELLGITRPTLYDLMKKH 442 (445)
T ss_pred HHhCCC--------HHHHHHHhCCCHHHHHHHHHHh
Confidence 655332 2556888999999999998876
No 41
>PRK15115 response regulator GlrR; Provisional
Probab=99.83 E-value=2e-19 Score=201.92 Aligned_cols=263 Identities=18% Similarity=0.254 Sum_probs=180.8
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee-------------cCCCchhhhccCceeecCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR-------------DGSSREFYLEGGAMVLADGG 433 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~-------------~~~~~~~~~~~G~l~la~~g 433 (726)
+.+++|.|++||||+.+|+++|..+++... .+..+.|+... ...++......|.+..+++|
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~------~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASK------PFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCC------CeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 378999999999999999999998875311 12222222111 11122333456788899999
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eee
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIF 512 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~ 512 (726)
++||||++.|++..|..|+++++++.+ .+.|.....+.++++|+|++. +.........|.+.|+.|++ +.+
T Consensus 231 tl~l~~i~~l~~~~q~~L~~~l~~~~~--~~~g~~~~~~~~~rii~~~~~------~l~~~~~~~~f~~~l~~~l~~~~i 302 (444)
T PRK15115 231 TLFLDEIGDMPAPLQVKLLRVLQERKV--RPLGSNRDIDIDVRIISATHR------DLPKAMARGEFREDLYYRLNVVSL 302 (444)
T ss_pred EEEEEccccCCHHHHHHHHHHHhhCCE--EeCCCCceeeeeEEEEEeCCC------CHHHHHHcCCccHHHHHhhceeee
Confidence 999999999999999999999999985 355666667789999999984 22344555678899999998 678
Q ss_pred EeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 513 IVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 513 ~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
.+|+..++.+| ..++.+++....... . ...+.++++|.+.|..|
T Consensus 303 ~lPpLr~R~eDi~~l~~~~l~~~~~~~---------------------~--~~~~~~~~~a~~~L~~~------------ 347 (444)
T PRK15115 303 KIPALAERTEDIPLLANHLLRQAAERH---------------------K--PFVRAFSTDAMKRLMTA------------ 347 (444)
T ss_pred cCCChHhccccHHHHHHHHHHHHHHHh---------------------C--CCCCCcCHHHHHHHHhC------------
Confidence 88888877666 456666665432110 1 12236999999999998
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCcccccccc-HHHHHHHHHHHHH
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLT-AEMAHEIKQAETQ 670 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 670 (726)
+||+|+|+|+++++.+...+. ...|+.+|+...+.- . .... ..+. ..+..+...|.++
T Consensus 348 -------~WpgNvreL~~~i~~~~~~~~---~~~i~~~~l~~~~~~--~------~~~~---~~~~~~~~~~E~~~i~~a 406 (444)
T PRK15115 348 -------SWPGNVRQLVNVIEQCVALTS---SPVISDALVEQALEG--E------NTAL---PTFVEARNQFELNYLRKL 406 (444)
T ss_pred -------CCCChHHHHHHHHHHHHHhCC---CCccChhhhhhhhcc--c------cccc---ccHHHHHHHHHHHHHHHH
Confidence 799999999999998876554 567888888654320 0 0000 0010 0112233445666
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 671 IKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
+++..++ ..+.|+.+||++.+++++|++|
T Consensus 407 l~~~~gn--------~~~aA~~Lgisr~tL~rkl~~~ 435 (444)
T PRK15115 407 LQITKGN--------VTHAARMAGRNRTEFYKLLSRH 435 (444)
T ss_pred HHHhCCC--------HHHHHHHhCCCHHHHHHHHHHh
Confidence 6655333 2556778888888888888876
No 42
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.83 E-value=5e-19 Score=188.71 Aligned_cols=290 Identities=13% Similarity=0.202 Sum_probs=187.1
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 413 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~ 413 (726)
.+++|++.+++.+..++.+.... .....|++|+||||||||++|+++++........... ....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~---------~~~~ 67 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSG---------PALE 67 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEecc---------chhc
Confidence 46899999999887766532100 0112589999999999999999999877654432110 0000
Q ss_pred cCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeee-ccce----EEEeeCceEEEEecCCCCCcC
Q 004862 414 DGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIA-KAGI----TTVLNSRTSVLAAANPPSGRY 488 (726)
Q Consensus 414 ~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~-~~g~----~~~l~~~~~iiaa~Np~~g~~ 488 (726)
. .+.+... .-.+..++++||||++.++++.++.|+.+|++....+- .++. .......+.+++++|.+
T Consensus 68 ~--~~~l~~~--l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~---- 139 (305)
T TIGR00635 68 K--PGDLAAI--LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA---- 139 (305)
T ss_pred C--chhHHHH--HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc----
Confidence 0 0111000 00123567999999999999999999999997654321 1111 11112247788888743
Q ss_pred CCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCC
Q 004862 489 DDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRL 568 (726)
Q Consensus 489 ~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~l 568 (726)
..+.++|.+||.+++.+......+ ++.++...-......+
T Consensus 140 ---------~~l~~~l~sR~~~~~~l~~l~~~e-------------------------------~~~il~~~~~~~~~~~ 179 (305)
T TIGR00635 140 ---------GMLTSPLRDRFGIILRLEFYTVEE-------------------------------LAEIVSRSAGLLNVEI 179 (305)
T ss_pred ---------cccCHHHHhhcceEEEeCCCCHHH-------------------------------HHHHHHHHHHHhCCCc
Confidence 136788999998887776554322 2222211111123468
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhc
Q 004862 569 SESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARS 648 (726)
Q Consensus 569 s~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~ 648 (726)
++++.+.|.+. ..+++|.+..+++.+...|.......|+.+++..++..+..+
T Consensus 180 ~~~al~~ia~~--------------------~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~------- 232 (305)
T TIGR00635 180 EPEAALEIARR--------------------SRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMID------- 232 (305)
T ss_pred CHHHHHHHHHH--------------------hCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC-------
Confidence 89999888775 346789999999988778877667789999999988663211
Q ss_pred CccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH-HHHHCCeEEEecCCeEEEecC
Q 004862 649 GINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALI-IMHQRDEVEYKRERRVILRKV 726 (726)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~g~~~~~~~ 726 (726)
..+++..++.. +.++.+... +..++..++ +..+|.+..+++..++ .|.+.|+|+.+..|+++|.+|
T Consensus 233 ----~~~l~~~~~~~----L~al~~~~~-~~~~~~~~i---a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~~~~~~ 299 (305)
T TIGR00635 233 ----ELGLDEIDRKL----LSVLIEQFQ-GGPVGLKTL---AAALGEDADTIEDVYEPYLLQIGFLQRTPRGRIATELA 299 (305)
T ss_pred ----CCCCCHHHHHH----HHHHHHHhC-CCcccHHHH---HHHhCCCcchHHHhhhHHHHHcCCcccCCchhhhhHHH
Confidence 11233333333 343333222 334555555 8889999999999999 699999999999999988754
No 43
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.83 E-value=1.4e-19 Score=212.63 Aligned_cols=291 Identities=15% Similarity=0.183 Sum_probs=185.0
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 413 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~ 413 (726)
..++|.....+.+.-.+..- -.++.||||+|+||||||++|++||..+++.-. ++.-++|+...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~------~~v~i~c~~~~ 439 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNR------RMVKMNCAAMP 439 (686)
T ss_pred cceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCC------CeEEEecccCC
Confidence 36888766655554333211 012379999999999999999999998875321 22222222111
Q ss_pred c-------------CCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEe
Q 004862 414 D-------------GSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAA 480 (726)
Q Consensus 414 ~-------------~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa 480 (726)
+ ..++......|.+..|++|++|||||+.++.+.|..|+.+++++.+ .+.|.....+.++++||+
T Consensus 440 ~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~--~~~g~~~~~~~~~RiI~~ 517 (686)
T PRK15429 440 AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEF--ERLGSNKIIQTDVRLIAA 517 (686)
T ss_pred hhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCE--EeCCCCCcccceEEEEEe
Confidence 1 0111112234567789999999999999999999999999999874 456666667788999999
Q ss_pred cCCCCCcCCCccchhhhccCchhhhcccC-eeeEeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHH
Q 004862 481 ANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQ 558 (726)
Q Consensus 481 ~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~ 558 (726)
+|.. .........|...|+.|+. +.+.+|+..++..| ..++.+++.......
T Consensus 518 t~~~------l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------------------- 571 (686)
T PRK15429 518 TNRD------LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM-------------------- 571 (686)
T ss_pred CCCC------HHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc--------------------
Confidence 9953 2234556678899999998 57888888887666 556666555422111
Q ss_pred HhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 559 YCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 559 ~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
.+ -.+.++++|.+.|..| +||+|+|+|+++++.+...+. ...++.+ +.... .
T Consensus 572 --~~-~~~~~s~~al~~L~~y-------------------~WPGNvrEL~~~i~~a~~~~~---~~~i~~~-l~~~~--~ 623 (686)
T PRK15429 572 --GR-NIDSIPAETLRTLSNM-------------------EWPGNVRELENVIERAVLLTR---GNVLQLS-LPDIT--L 623 (686)
T ss_pred --CC-CCCCcCHHHHHHHHhC-------------------CCCCcHHHHHHHHHHHHHhCC---CCccccc-Cchhh--c
Confidence 11 1246999999999998 799999999999998876554 4445442 22211 0
Q ss_pred hhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 639 TVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 639 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
.. ........ .....+..+...|.+++++..++..+ . .+.|+.+||++.++.++|++|
T Consensus 624 ~~----~~~~~~~~--~~~~~~~~Er~~I~~aL~~~~gn~~~--~---~~aA~~LGi~R~tL~rklk~~ 681 (686)
T PRK15429 624 PE----PETPPAAT--VVAQEGEDEYQLIVRVLKETNGVVAG--P---KGAAQRLGLKRTTLLSRMKRL 681 (686)
T ss_pred cc----cccccccc--ccccHHHHHHHHHHHHHHHcCCCccc--H---HHHHHHhCCCHHHHHHHHHHc
Confidence 00 00000000 01111223345567777766443211 1 245777888888888877765
No 44
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.82 E-value=3.7e-19 Score=200.67 Aligned_cols=270 Identities=14% Similarity=0.179 Sum_probs=179.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee-------------cCCCchhhhccCceeecCCCe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR-------------DGSSREFYLEGGAMVLADGGV 434 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~-------------~~~~~~~~~~~G~l~la~~gv 434 (726)
.++|+.|++||||+++|+++|..+++... .+..+.|+... ...++......|.+..|++|+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~------~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKG------PFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCC------CeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 78999999999999999999987764311 11111121111 011233334568889999999
Q ss_pred EEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeE
Q 004862 435 VCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFI 513 (726)
Q Consensus 435 l~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~ 513 (726)
+|||||+.|++..|..|+++++++.+. +.|.....+.++++|+|+|.. .........+.+.|+.|+. +.+.
T Consensus 241 l~ld~i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~------l~~~~~~g~~~~~l~~~l~~~~i~ 312 (457)
T PRK11361 241 LLLDEIGEMPLVLQAKLLRILQEREFE--RIGGHQTIKVDIRIIAATNRD------LQAMVKEGTFREDLFYRLNVIHLI 312 (457)
T ss_pred EEEechhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeeceEEEEeCCCC------HHHHHHcCCchHHHHHHhccceec
Confidence 999999999999999999999998854 566666778899999999953 2234455668889999987 6777
Q ss_pred eccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 514 VKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 514 l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
+|+..++..| ..++.+++...... . ..-.+.++++|.+.|..|
T Consensus 313 ~ppLreR~~di~~l~~~~l~~~~~~----------------------~-~~~~~~~~~~a~~~L~~~------------- 356 (457)
T PRK11361 313 LPPLRDRREDISLLANHFLQKFSSE----------------------N-QRDIIDIDPMAMSLLTAW------------- 356 (457)
T ss_pred CCChhhchhhHHHHHHHHHHHHHHH----------------------c-CCCCCCcCHHHHHHHHcC-------------
Confidence 7888877666 34555555432111 0 111347999999999998
Q ss_pred ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCc-ccc-ccccH-HHHHHHHHHHH
Q 004862 593 ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGI-NQQ-VNLTA-EMAHEIKQAET 669 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~ 669 (726)
+||+|+|+|+++++.+...+. ...++.+|+...+..- .. ....... ... ..+.. -+..+...|.+
T Consensus 357 ------~wpgNv~eL~~~~~~~~~~~~---~~~i~~~~l~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~E~~~i~~ 424 (457)
T PRK11361 357 ------SWPGNIRELSNVIERAVVMNS---GPIIFSEDLPPQIRQP--VC-NAGEVKTAPVGERNLKEEIKRVEKRIIME 424 (457)
T ss_pred ------CCCCcHHHHHHHHHHHHHhCC---CCcccHHHChHhhhcc--cc-cccccccccccccchhhHHHHHHHHHHHH
Confidence 799999999999998776554 5678999987654211 00 0000000 000 01111 11222344555
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 670 QIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
++++..++ ..+.|+.+||++.++.++|++|
T Consensus 425 al~~~~gn--------~~~aA~~LGisr~tL~rkl~~~ 454 (457)
T PRK11361 425 VLEQQEGN--------RTRTALMLGISRRALMYKLQEY 454 (457)
T ss_pred HHHHhCCC--------HHHHHHHHCCCHHHHHHHHHHh
Confidence 66654332 3566888999999999988876
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=1.2e-19 Score=177.44 Aligned_cols=201 Identities=18% Similarity=0.269 Sum_probs=128.2
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccC--cceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCccccc
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRG--DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLT 408 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~--~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~ 408 (726)
-..+++||+.++..+-..+-... .|+ =.|+||+||||+|||+||+.|++.+...+.. +|......+-
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~---------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~d- 91 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAK---------KRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGD- 91 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHH---------CTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHH-
T ss_pred CHHHccCcHHHHhhhHHHHHHHH---------hcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHH-
Confidence 35578999999987654443220 011 1599999999999999999999999877653 2211111100
Q ss_pred ceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeee-ccc---eEEEee-CceEEEEecCC
Q 004862 409 ASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIA-KAG---ITTVLN-SRTSVLAAANP 483 (726)
Q Consensus 409 ~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~-~~g---~~~~l~-~~~~iiaa~Np 483 (726)
...+-. .+..+-|+|||||+++++..|+.|+.+||++.+.+. ..| .+..++ .+|++|+||+.
T Consensus 92 ----------l~~il~---~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 92 ----------LAAILT---NLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ----------HHHHHH---T--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ----------HHHHHH---hcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 000000 134567999999999999999999999999998652 333 122332 46999999974
Q ss_pred CCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHcc
Q 004862 484 PSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLE 563 (726)
Q Consensus 484 ~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~ 563 (726)
. ..+++||.+||.++..+. .++.+.|.+.+..+...
T Consensus 159 ~-------------g~ls~pLrdRFgi~~~l~-------------------------------~Y~~~el~~Iv~r~a~~ 194 (233)
T PF05496_consen 159 A-------------GLLSSPLRDRFGIVLRLE-------------------------------FYSEEELAKIVKRSARI 194 (233)
T ss_dssp G-------------CCTSHCCCTTSSEEEE-----------------------------------THHHHHHHHHHCCHC
T ss_pred c-------------cccchhHHhhcceecchh-------------------------------cCCHHHHHHHHHHHHHH
Confidence 2 348999999999998763 45555666676665555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHh
Q 004862 564 CHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAK 619 (726)
Q Consensus 564 ~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~ 619 (726)
+...+++++...|.+. ..+|||-..+++|....+|.
T Consensus 195 l~i~i~~~~~~~Ia~r--------------------srGtPRiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 195 LNIEIDEDAAEEIARR--------------------SRGTPRIANRLLRRVRDFAQ 230 (233)
T ss_dssp TT-EE-HHHHHHHHHC--------------------TTTSHHHHHHHHHHHCCCCC
T ss_pred hCCCcCHHHHHHHHHh--------------------cCCChHHHHHHHHHHHHHHH
Confidence 6778999999998874 56999999999998876554
No 46
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=187.20 Aligned_cols=277 Identities=17% Similarity=0.219 Sum_probs=192.6
Q ss_pred HHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe--CCCCC
Q 004862 325 YKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT--SGKGS 402 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~--~g~~~ 402 (726)
...+...+.+.++|.+.+...+++++..| -|+||.|+||||||++++.+++.+...++. +....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~--------------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAG--------------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcC--------------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 44566678888999999999999999888 699999999999999999999998865443 22233
Q ss_pred CcccccceeeecCC---CchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEE
Q 004862 403 SAAGLTASVIRDGS---SREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLA 479 (726)
Q Consensus 403 ~~~gl~~~~~~~~~---~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iia 479 (726)
...++++....... .+.+.+.+|.+..+.++++++|||++.+++.|++|+++|+++.+++...+. ..++..+.++|
T Consensus 81 ~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~via 159 (329)
T COG0714 81 LPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTT-IRLPPPFIVIA 159 (329)
T ss_pred CHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCC-cCCCCCCEEEE
Confidence 33344443333222 455667788887777789999999999999999999999999988754443 67888999999
Q ss_pred ecCCC--CCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHH
Q 004862 480 AANPP--SGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYI 557 (726)
Q Consensus 480 a~Np~--~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi 557 (726)
|+||. .|. ..+++++++||.+...+.-+.++++...+..+........ ......+.++...+.++.
T Consensus 160 T~Np~e~~g~----------~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~ 227 (329)
T COG0714 160 TQNPGEYEGT----------YPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELD--LESLVKPVLSDEELLRLQ 227 (329)
T ss_pred ccCccccCCC----------cCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccc--cchhhhhhhCHHHHHHHH
Confidence 99983 233 3489999999987777665544432222222221110000 011112334444444433
Q ss_pred HHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 558 QYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 558 ~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
...+ ...+++++.+++.......|.... ..+..++|....++..+.+.|.+.++..+.++|+......
T Consensus 228 ~~~~---~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~ 295 (329)
T COG0714 228 KEVK---KVPVSDEVIDYIVTLVAALREAPD---------VALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEP 295 (329)
T ss_pred hhhc---cCCchHHHHHHHHHHHHhhccccc---------hhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhh
Confidence 2222 345788888888777655543321 2456789999999999999999999999999999876654
Q ss_pred Hhh
Q 004862 638 FTV 640 (726)
Q Consensus 638 ~~~ 640 (726)
...
T Consensus 296 ~~~ 298 (329)
T COG0714 296 ALA 298 (329)
T ss_pred hhh
Confidence 443
No 47
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.81 E-value=1.2e-18 Score=199.47 Aligned_cols=171 Identities=20% Similarity=0.248 Sum_probs=129.0
Q ss_pred hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccce--------EEEeeCceEEEEecCCCCCcCCCccc
Q 004862 422 LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGI--------TTVLNSRTSVLAAANPPSGRYDDLKS 493 (726)
Q Consensus 422 ~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~--------~~~l~~~~~iiaa~Np~~g~~~~~~~ 493 (726)
.++|++..|+||+|||||++.|++..|..|+++|+++++.+..... ....|+++++|+++||.
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~--------- 278 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD--------- 278 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH---------
Confidence 4689999999999999999999999999999999999987654311 23457899999999962
Q ss_pred hhhhccCchhhhcccC---eeeEeccCCC--hhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHcc-CCCC
Q 004862 494 AQDNIDLQTTILSRFD---LIFIVKDIRM--YNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLE-CHPR 567 (726)
Q Consensus 494 ~~~~~~l~~~Ll~RFd---li~~l~d~~~--~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~-~~p~ 567 (726)
....+.++|++||+ +.+.+.+..+ .+....++.++... ++++ ..|.
T Consensus 279 --~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~--------------------------~~r~G~l~~ 330 (608)
T TIGR00764 279 --DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE--------------------------VKKDGRIPH 330 (608)
T ss_pred --HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH--------------------------HHHhCCCCc
Confidence 23358899999999 6666655432 22222233322221 2222 3567
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 004862 568 LSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFT 639 (726)
Q Consensus 568 ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 639 (726)
++++|.+.|.++|..+ . +....|+++.|+|.+++|.|.+.|+.+.++.|+.+||.+|++...
T Consensus 331 ~s~~Av~~Li~~~~R~--a--------g~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 331 FTRDAVEEIVREAQRR--A--------GRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred CCHHHHHHHHHHHHHH--H--------hcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 9999999999987533 2 123469999999999999999999999999999999999987543
No 48
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.80 E-value=1.9e-18 Score=195.14 Aligned_cols=273 Identities=18% Similarity=0.220 Sum_probs=181.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee-------------cCCCchhhhccCceeecCCCe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR-------------DGSSREFYLEGGAMVLADGGV 434 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~-------------~~~~~~~~~~~G~l~la~~gv 434 (726)
.++++.|++||||+++|+++|..+++... ++..++|+... ...++......|.+..+++|+
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~------~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANG------PFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGT 231 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCC------CeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCe
Confidence 78999999999999999999998875421 11112221111 011122223457788999999
Q ss_pred EEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeE
Q 004862 435 VCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFI 513 (726)
Q Consensus 435 l~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~ 513 (726)
+||||++.|+++.|..|+++++++.+. +.|.....+.++++|+|+|.. .........+.+.|+.|+. +.+.
T Consensus 232 l~l~ei~~l~~~~q~~ll~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~------l~~~~~~~~f~~~L~~rl~~~~i~ 303 (463)
T TIGR01818 232 LFLDEIGDMPLDAQTRLLRVLADGEFY--RVGGRTPIKVDVRIVAATHQN------LEALVRQGKFREDLFHRLNVIRIH 303 (463)
T ss_pred EEEEchhhCCHHHHHHHHHHHhcCcEE--ECCCCceeeeeeEEEEeCCCC------HHHHHHcCCcHHHHHHHhCcceec
Confidence 999999999999999999999999854 556656677789999999953 2233455668889999988 6888
Q ss_pred eccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 514 VKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 514 l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
+|+..++..| ..++.+++....... . .-.+.++++|.+.|..|
T Consensus 304 lPpLr~R~~Di~~l~~~~l~~~~~~~----------------------~-~~~~~~~~~a~~~L~~~------------- 347 (463)
T TIGR01818 304 LPPLRERREDIPRLARHFLALAAREL----------------------D-VEPKLLDPEALERLKQL------------- 347 (463)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHh----------------------C-CCCCCcCHHHHHHHHhC-------------
Confidence 8998887766 566766665432111 0 01246999999999998
Q ss_pred ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcC-----------------cccccc
Q 004862 593 ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSG-----------------INQQVN 655 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~-----------------~~~~~~ 655 (726)
+||+|+|+|+++++.+...|. ...++.+|+...+.............+ ......
T Consensus 348 ------~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (463)
T TIGR01818 348 ------RWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSRGEQGL 418 (463)
T ss_pred ------CCCChHHHHHHHHHHHHHhCC---CCcccHHhchHHHhccccccccccccccccccccccccccccccccccch
Confidence 799999999999998877664 668999998766532100000000000 000000
Q ss_pred ccH-HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004862 656 LTA-EMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIM 707 (726)
Q Consensus 656 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 707 (726)
+.. -+..+...|..++++..++ ..+.|+.+||++.+++++|++|
T Consensus 419 ~~~~l~~~E~~~i~~al~~~~gn--------~~~aA~~Lgisr~tL~rkl~~~ 463 (463)
T TIGR01818 419 LDRALPEFERPLLEAALQHTRGH--------KQEAAALLGWGRNTLTRKLKEL 463 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHHhC
Confidence 000 1122223455555554332 3666889999999999999875
No 49
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.79 E-value=4.6e-18 Score=192.72 Aligned_cols=251 Identities=19% Similarity=0.238 Sum_probs=161.4
Q ss_pred HHHHHHHHHHhc---CcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHH
Q 004862 309 QEEIEKFKKFAS---QPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLK 385 (726)
Q Consensus 309 ~~~~~~~~~~~~---~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~ 385 (726)
.++++.++++.. ...+-++..-.-+.+++|++...+++..++++.. +.|+||+||||||||++|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~------------~~~vLi~Ge~GtGKt~lAr 104 (531)
T TIGR02902 37 KKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPN------------PQHVIIYGPPGVGKTAAAR 104 (531)
T ss_pred hHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHH
Confidence 445566655532 2222222222223369999999988887776552 2799999999999999999
Q ss_pred HHHHhCCCcEEeC-CCCCCccccccee---------------eecC---------CCchhhhccCceeecCCCeEEeccc
Q 004862 386 FVEKTAPIAVYTS-GKGSSAAGLTASV---------------IRDG---------SSREFYLEGGAMVLADGGVVCIDEF 440 (726)
Q Consensus 386 ~i~~~~~~~~~~~-g~~~~~~gl~~~~---------------~~~~---------~~~~~~~~~G~l~la~~gvl~iDEi 440 (726)
+++..+.+..... ....++..+.++. ..++ ..+.....+|.+..|++|++||||+
T Consensus 105 ~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI 184 (531)
T TIGR02902 105 LVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEI 184 (531)
T ss_pred HHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEech
Confidence 9987532110000 0000111111110 0011 0111223567888999999999999
Q ss_pred CcCCHHHHHHHHHHHhcceEeeeccce---------------EEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh
Q 004862 441 DKMRPEDRVAIHEAMEQQTISIAKAGI---------------TTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL 505 (726)
Q Consensus 441 ~~~~~~~~~~L~~~me~~~i~i~~~g~---------------~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll 505 (726)
+.|++..|+.|+.+||++.+.+..+.. ...+++++++|+||+... ..++++|.
T Consensus 185 ~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p------------~~L~paLr 252 (531)
T TIGR02902 185 GELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP------------EEIPPALR 252 (531)
T ss_pred hhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc------------ccCChHHh
Confidence 999999999999999998876542100 124578899998887411 13789999
Q ss_pred cccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHH
Q 004862 506 SRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRK 585 (726)
Q Consensus 506 ~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~ 585 (726)
+|+..++ +++... +.-..++++.++ .....+++++.+.|..|
T Consensus 253 sR~~~I~-f~pL~~-eei~~Il~~~a~------------------------------k~~i~is~~al~~I~~y------ 294 (531)
T TIGR02902 253 SRCVEIF-FRPLLD-EEIKEIAKNAAE------------------------------KIGINLEKHALELIVKY------ 294 (531)
T ss_pred hhhheee-CCCCCH-HHHHHHHHHHHH------------------------------HcCCCcCHHHHHHHHHh------
Confidence 9986443 444432 111222222111 13346899999988876
Q ss_pred HHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 586 DMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 586 ~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
.| +.|++.++++.|...|..+.+..|+.+|+++++.
T Consensus 295 -------------~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 295 -------------AS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred -------------hh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 24 6799999999998888877888999999999985
No 50
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.78 E-value=7.1e-18 Score=189.32 Aligned_cols=263 Identities=17% Similarity=0.257 Sum_probs=176.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec-------------CCCchhhhccCceeecCCCe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD-------------GSSREFYLEGGAMVLADGGV 434 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~-------------~~~~~~~~~~G~l~la~~gv 434 (726)
.++++.|++||||+++++++|..+++... ++..+.|+...+ ..++......|.+..|++|+
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~------~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEK------PLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCC------CeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 78999999999999999999988875421 111122221110 01111123467888999999
Q ss_pred EEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeE
Q 004862 435 VCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFI 513 (726)
Q Consensus 435 l~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~ 513 (726)
+|||||+.|++..|..|+.+++++.+. +.|.....+.++++|+|++... ........+.+.|+.|+. +.+.
T Consensus 237 l~ldei~~l~~~~q~~l~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~~------~~~~~~~~~~~~l~~~l~~~~i~ 308 (441)
T PRK10365 237 LFLDEIGDISPMMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDL------AAEVNAGRFRQDLYYRLNVVAIE 308 (441)
T ss_pred EEEeccccCCHHHHHHHHHHHccCcEE--eCCCCceeeeceEEEEeCCCCH------HHHHHcCCchHHHHHHhccceec
Confidence 999999999999999999999999853 5666667788999999998531 233445568889999997 6777
Q ss_pred eccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 514 VKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 514 l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
+|+..++..| ..++.+++...... .. .-.+.+++++.+.|..|
T Consensus 309 ~ppLreR~~Di~~l~~~~l~~~~~~----------------------~~-~~~~~~~~~a~~~L~~~------------- 352 (441)
T PRK10365 309 VPSLRQRREDIPLLAGHFLQRFAER----------------------NR-KAVKGFTPQAMDLLIHY------------- 352 (441)
T ss_pred CCChhhcchhHHHHHHHHHHHHHHH----------------------hC-CCCCCcCHHHHHHHHhC-------------
Confidence 8888877666 55666655532111 01 12246999999999988
Q ss_pred ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHH
Q 004862 593 ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIK 672 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (726)
+||+|+|+|+++++.+...+. ...++.+|+...+.. ... ... ....+..-+..+...|.+++.
T Consensus 353 ------~wpgN~reL~~~~~~~~~~~~---~~~i~~~~l~~~~~~--~~~----~~~--~~~~~~~l~~~e~~~i~~~l~ 415 (441)
T PRK10365 353 ------DWPGNIRELENAVERAVVLLT---GEYISERELPLAIAS--TPI----PLG--QSQDIQPLVEVEKEVILAALE 415 (441)
T ss_pred ------CCCCHHHHHHHHHHHHHHhCC---CCccchHhCchhhcc--ccc----Ccc--cccchhhHHHHHHHHHHHHHH
Confidence 799999999999998766543 567898888765421 000 000 000011111222234555566
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 004862 673 RRIPIGNQISERRLIDDLTRMGMNESIIRRALI 705 (726)
Q Consensus 673 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 705 (726)
+..++ ..+.|+.+||++.+++++|+
T Consensus 416 ~~~gn--------~~~aa~~Lgisr~tl~rk~~ 440 (441)
T PRK10365 416 KTGGN--------KTEAARQLGITRKTLLAKLS 440 (441)
T ss_pred HhCCC--------HHHHHHHhCCCHHHHHHHhh
Confidence 54332 36668899999999999886
No 51
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.74 E-value=9.7e-18 Score=149.83 Aligned_cols=126 Identities=25% Similarity=0.372 Sum_probs=84.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEe-CCC-CCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHH
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGK-GSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPE 446 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~-~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~ 446 (726)
||||.|.||+|||++++++++.....+.- ..+ .....++++..+.+..++.|.+.+|.+. .+++++|||+..++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh---hceeeecccccCCHH
Confidence 89999999999999999999998866432 121 1223455555555555677777777765 469999999999999
Q ss_pred HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCC--CCcCCCccchhhhccCchhhhcccC
Q 004862 447 DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPP--SGRYDDLKSAQDNIDLQTTILSRFD 509 (726)
Q Consensus 447 ~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~--~g~~~~~~~~~~~~~l~~~Ll~RFd 509 (726)
.|++|+++|+++.|++ .|....+|..+.||||.||. .|. ..+++++++||=
T Consensus 78 tQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e~~Gt----------y~Lpea~~DRF~ 130 (131)
T PF07726_consen 78 TQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVEQEGT----------YPLPEAQLDRFM 130 (131)
T ss_dssp HHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT--S----------------HHHHTTSS
T ss_pred HHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCccccCce----------ecCCHHHhcccc
Confidence 9999999999999875 67888999999999999994 233 349999999994
No 52
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.72 E-value=9e-16 Score=160.29 Aligned_cols=221 Identities=14% Similarity=0.203 Sum_probs=140.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEe-C-CCCCCccccccee---eecCCCchhhhccCceee--cCCCeEEeccc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-S-GKGSSAAGLTASV---IRDGSSREFYLEGGAMVL--ADGGVVCIDEF 440 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~-g~~~~~~gl~~~~---~~~~~~~~~~~~~G~l~l--a~~gvl~iDEi 440 (726)
-||||.|+||||||++++.+++.+...++. . ....+..++.+.. .++. ...+.+..|.+.. .+++++++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g-~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDG-KQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCC-cceeEEecCcchhHHhCCeEEEechh
Confidence 589999999999999999999988876553 1 1222233333321 1111 1224456777755 45778999999
Q ss_pred CcCCHHHHHHHHHHHh-cceEeeeccceEEEeeCceEEEEecCCCC-CcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 441 DKMRPEDRVAIHEAME-QQTISIAKAGITTVLNSRTSVLAAANPPS-GRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 441 ~~~~~~~~~~L~~~me-~~~i~i~~~g~~~~l~~~~~iiaa~Np~~-g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
|.++++.+..|+.++| .+.+++...+....-+..|++|||+||.. | +..--......++.++++||-+++.+..++
T Consensus 144 n~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G--d~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~ 221 (327)
T TIGR01650 144 DAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG--DTTGLYHGTQQINQAQMDRWSIVTTLNYLE 221 (327)
T ss_pred hccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC--CCCcceeeeecCCHHHHhheeeEeeCCCCC
Confidence 9999999999999999 46888866665555566899999999953 2 111112345568999999997766554443
Q ss_pred ChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 004862 519 MYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAA 598 (726)
Q Consensus 519 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~ 598 (726)
.+....|. ...... +.+..+++..+.+.+.....|+.... ...
T Consensus 222 -~e~E~~Il----~~~~~~--------------------------~~~~~~~~i~~~mV~la~~tR~~~~~------~~i 264 (327)
T TIGR01650 222 -HDNEAAIV----LAKAKG--------------------------FDDTEGKDIINAMVRVADMTRNAFIN------GDI 264 (327)
T ss_pred -HHHHHHHH----HhhccC--------------------------CCccchHHHHHHHHHHHHHHHhhhcc------CCc
Confidence 22222221 111000 11112345666677777667764321 134
Q ss_pred CccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 599 PIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 599 ~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
.+++|+|.+.+|.+++...- .|+..|+++.
T Consensus 265 ~~~~SpR~li~w~~~~~~f~----------~~~~~a~~~~ 294 (327)
T TIGR01650 265 STVMSPRTVITWAENAEIFD----------HDIALAFRLT 294 (327)
T ss_pred cccccHHHHHHHHHHHHhhC----------ccHHHHHHHH
Confidence 67899999999998876541 2666666543
No 53
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.71 E-value=3.3e-16 Score=162.64 Aligned_cols=210 Identities=15% Similarity=0.193 Sum_probs=136.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCC-CCcccccceeee----------------cCCCchhhhccCceee
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKG-SSAAGLTASVIR----------------DGSSREFYLEGGAMVL 429 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~-~~~~gl~~~~~~----------------~~~~~~~~~~~G~l~l 429 (726)
.|+||.||||||||++|+++++.....+.. ++.. .....+...... ..........+|.+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 689999999999999999999877655442 2221 111112111100 0000111123566653
Q ss_pred --cCCCeEEecccCcCCHHHHHHHHHHHhcceEeeecc---ceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhh
Q 004862 430 --ADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKA---GITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTI 504 (726)
Q Consensus 430 --a~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~---g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~L 504 (726)
+.|++++||||++++++.+..|+++||++.+++... +.....+.+++||||+||... .....++++|
T Consensus 102 A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~--------~g~~~l~~aL 173 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEY--------AGVHETQDAL 173 (262)
T ss_pred HHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccc--------cceecccHHH
Confidence 578999999999999999999999999999877542 234456779999999998410 1112368899
Q ss_pred hcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHH
Q 004862 505 LSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIR 584 (726)
Q Consensus 505 l~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R 584 (726)
++||- .+.+ +.|+.+....|. ..+ + .++++..+.+.+.+..+|
T Consensus 174 ~~R~~-~i~i-~~P~~~~e~~Il----~~~-----------------------------~--~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 174 LDRLI-TIFM-DYPDIDTETAIL----RAK-----------------------------T--DVAEDSAATIVRLVREFR 216 (262)
T ss_pred HhhcE-EEEC-CCCCHHHHHHHH----HHh-----------------------------h--CCCHHHHHHHHHHHHHHH
Confidence 99983 3333 444443333321 110 1 367788888999999998
Q ss_pred HHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 585 KDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
... .....++|++..+.|.+.++ .++..|+++|+....
T Consensus 217 ~~~----------~~~~~~~r~~i~~~~~~~~~---~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 217 ASG----------DEITSGLRASLMIAEVATQQ---DIPVDVDDEDFVDLC 254 (262)
T ss_pred hhC----------CccCCcHHHHHHHHHHHHHc---CCCCCCCcHHHHHHH
Confidence 321 12345688887777666554 568999999998654
No 54
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.69 E-value=1.2e-15 Score=174.13 Aligned_cols=166 Identities=20% Similarity=0.317 Sum_probs=122.4
Q ss_pred hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeecc----ce----EEEeeCceEEEEecCCCCCcCCCccc
Q 004862 422 LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKA----GI----TTVLNSRTSVLAAANPPSGRYDDLKS 493 (726)
Q Consensus 422 ~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~----g~----~~~l~~~~~iiaa~Np~~g~~~~~~~ 493 (726)
+++|++..|+||+|||||++.|++..|..|+++|+++++.+... +. ....+.++++|+++|+.
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~--------- 287 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLD--------- 287 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcC---------
Confidence 38999999999999999999999999999999999999876321 11 34567899999999972
Q ss_pred hhhhccCchhhhcccC---eeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHcc-----CC
Q 004862 494 AQDNIDLQTTILSRFD---LIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLE-----CH 565 (726)
Q Consensus 494 ~~~~~~l~~~Ll~RFd---li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~-----~~ 565 (726)
....+.++|++||. +.+.+.+.. ..+.+..++|+++..+. -.
T Consensus 288 --ll~~~dpdL~~rfk~~~v~v~f~~~~----------------------------~d~~e~~~~~~~~iaqe~~~~G~l 337 (637)
T PRK13765 288 --ALENMHPALRSRIKGYGYEVYMRDTM----------------------------EDTPENRRKLVRFVAQEVKRDGKI 337 (637)
T ss_pred --HHHhhhHHHHHHhccCeEEEEccccc----------------------------CCCHHHHHHHHHHHHHHhhhccCC
Confidence 11235788999987 444433222 12223333444432221 24
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 566 PRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 566 p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
|.++++|...|.++|.. .. +.........|+|..|+|.|...|+...++.|+.+|+..|+.
T Consensus 338 ~~f~~eAVa~LI~~~~R--~a--------g~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 338 PHFDRDAVEEIIREAKR--RA--------GRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred CCCCHHHHHHHHHHHHH--Hh--------CCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 67999999999999863 22 223356677899999999999999999999999999998874
No 55
>CHL00181 cbbX CbbX; Provisional
Probab=99.66 E-value=8.3e-16 Score=160.99 Aligned_cols=225 Identities=18% Similarity=0.156 Sum_probs=133.6
Q ss_pred hHHHHHHhhcCCccCchhHHHHHHHH---H-hCCCcccCCCCcc-ccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-
Q 004862 324 AYKTVCSKIAPSIFGHDDVKKAVSCL---L-FGGSRKNLPDGVK-LRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT- 397 (726)
Q Consensus 324 ~~~~l~~si~p~I~G~~~~k~aill~---L-~~~~~~~~~~g~~-~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~- 397 (726)
....+...+.++++|++.+|+.+.-. + +....+. -|.. .+...|+||+||||||||++|+++++.+...-+.
T Consensus 13 ~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~--~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 13 QIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKN--LGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred CHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 44567788999999999999966311 1 1111111 1111 1234799999999999999999998765321110
Q ss_pred CCCC--CCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC---------CHHHHHHHHHHHhcceEeeeccc
Q 004862 398 SGKG--SSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM---------RPEDRVAIHEAMEQQTISIAKAG 466 (726)
Q Consensus 398 ~g~~--~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~---------~~~~~~~L~~~me~~~i~i~~~g 466 (726)
.+.. .+...+....... +.. ...+.+..+.+||+||||++.+ ..+.+..|+.+|+++.
T Consensus 91 ~~~~~~v~~~~l~~~~~g~--~~~--~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~------- 159 (287)
T CHL00181 91 KGHLLTVTRDDLVGQYIGH--TAP--KTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR------- 159 (287)
T ss_pred CCceEEecHHHHHHHHhcc--chH--HHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-------
Confidence 0000 0000111100000 000 0112344577899999999986 4567889999998643
Q ss_pred eEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccc
Q 004862 467 ITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKV 546 (726)
Q Consensus 467 ~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 546 (726)
.++.||+|+++. ....-..+.|+|.+||+.++.+++....+ -..|..+++..
T Consensus 160 ------~~~~vI~ag~~~--------~~~~~~~~np~L~sR~~~~i~F~~~t~~e-l~~I~~~~l~~------------- 211 (287)
T CHL00181 160 ------DDLVVIFAGYKD--------RMDKFYESNPGLSSRIANHVDFPDYTPEE-LLQIAKIMLEE------------- 211 (287)
T ss_pred ------CCEEEEEeCCcH--------HHHHHHhcCHHHHHhCCceEEcCCcCHHH-HHHHHHHHHHH-------------
Confidence 347788888742 11222345689999999999888776322 23333322221
Q ss_pred cCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHH
Q 004862 547 SKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALA 618 (726)
Q Consensus 547 ~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A 618 (726)
....+++++.+.+..++...+ ..+|++|.|.+.++++.+...-
T Consensus 212 -----------------~~~~l~~~~~~~L~~~i~~~~------------~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 212 -----------------QQYQLTPEAEKALLDYIKKRM------------EQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred -----------------hcCCCChhHHHHHHHHHHHhC------------CCCCCccHHHHHHHHHHHHHHH
Confidence 123477777777777654321 1368899999999997655433
No 56
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.65 E-value=7.2e-17 Score=147.49 Aligned_cols=112 Identities=38% Similarity=0.557 Sum_probs=85.1
Q ss_pred HHHHHHHHHhccccCCCcchhHHHHhc----CCCEEEEecchhhccCchHHHHHHhCHHHHHHHHHHHHHHHHHHhcc--
Q 004862 35 TLIKFKEFIRNFERDKNVFPYRESLIE----NPKFLLVHLEDLLAFDADLPSLLRSSPADFLPLFETAAAEVLASLKM-- 108 (726)
Q Consensus 35 ~~~~f~~Fl~~f~~~~~~~~Y~~~l~~----~~~~l~Vd~~dL~~f~~~La~~l~~~P~~~l~~~~~a~~e~~~~~~~-- 108 (726)
|+++|++||.+|.. ..+|+++|++ ...+|.|||+||.+|+++||++|+++|.+++++|+.|+++++.+...
T Consensus 1 i~~~F~~Fl~~f~~---~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~~ 77 (121)
T PF14551_consen 1 IKRRFREFLREFKE---EPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELFPSE 77 (121)
T ss_dssp --HHHHHHCCCH-T---S-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT----
T ss_pred ChHHHHHHHHcCCC---chHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 57899999999863 6679998875 46789999999999999999999999999999999999999987532
Q ss_pred ---ccCCCCCCcceEEEEecCCCCcccccccCccCCCcEEEEEe
Q 004862 109 ---KVDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISG 149 (726)
Q Consensus 109 ---~~~~~~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~G 149 (726)
.........+.++|++.|.+...++|+|++++||+||+|+|
T Consensus 78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 78 QQSSFPPELKRRKEIQVRFYNLPKSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp ------GCCTTTS--EEEEES-S-EE-GGG-SGGGTTSEEEEEE
T ss_pred cccCCchhhccceeEEEEEcCCCCCcCcCCCChHHCCCEEEEeC
Confidence 11111234578999999999999999999999999999999
No 57
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.64 E-value=1.3e-15 Score=159.58 Aligned_cols=227 Identities=19% Similarity=0.172 Sum_probs=132.4
Q ss_pred HHHhhcCCccCchhHHHHHHHH--HhCCCcccCCCCcc-ccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCC--
Q 004862 328 VCSKIAPSIFGHDDVKKAVSCL--LFGGSRKNLPDGVK-LRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKG-- 401 (726)
Q Consensus 328 l~~si~p~I~G~~~~k~aill~--L~~~~~~~~~~g~~-~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~-- 401 (726)
+...+.-++.|++.+|+.+.-. +.-........|.. .....|+||+||||||||++|+++++.+...-+. .+..
T Consensus 16 ~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~ 95 (284)
T TIGR02880 16 VLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS 95 (284)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE
Confidence 3334445679999999986321 11110000111211 1133699999999999999998876655321110 0000
Q ss_pred CCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC---------CHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 402 SSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM---------RPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 402 ~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~---------~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
.+...+......+ +.. ...+.+..+.+|+|||||++.+ +.+.+..|++.|+++.
T Consensus 96 v~~~~l~~~~~g~--~~~--~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~------------- 158 (284)
T TIGR02880 96 VTRDDLVGQYIGH--TAP--KTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR------------- 158 (284)
T ss_pred ecHHHHhHhhccc--chH--HHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-------------
Confidence 0000111110000 000 0123345577899999999977 3556789999998653
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
.++.||+|+++. ....-..+.++|.+||+..+.++++.. +.-..|..+++..
T Consensus 159 ~~~~vI~a~~~~--------~~~~~~~~np~L~sR~~~~i~fp~l~~-edl~~I~~~~l~~------------------- 210 (284)
T TIGR02880 159 DDLVVILAGYKD--------RMDSFFESNPGFSSRVAHHVDFPDYSE-AELLVIAGLMLKE------------------- 210 (284)
T ss_pred CCEEEEEeCCcH--------HHHHHHhhCHHHHhhCCcEEEeCCcCH-HHHHHHHHHHHHH-------------------
Confidence 357888888753 112223467999999999998888772 2223443333322
Q ss_pred HHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhC
Q 004862 553 LKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKL 622 (726)
Q Consensus 553 L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~ 622 (726)
..+.+++++.+.+..|....+ ..+||+|.|+|.++++.+......++
T Consensus 211 -----------~~~~l~~~a~~~L~~~l~~~~------------~~~~~GN~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 211 -----------QQYRFSAEAEEAFADYIALRR------------TQPHFANARSIRNAIDRARLRQANRL 257 (284)
T ss_pred -----------hccccCHHHHHHHHHHHHHhC------------CCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 223578888888877643221 23799999999999987766554443
No 58
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.62 E-value=1.9e-16 Score=152.46 Aligned_cols=130 Identities=16% Similarity=0.317 Sum_probs=93.5
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee-------------cCCCchhhhccCceeecCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR-------------DGSSREFYLEGGAMVLADGG 433 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~-------------~~~~~~~~~~~G~l~la~~g 433 (726)
+.||||+|++||||+.+|++||..+++... ++..++|+... ...++......|.+..|++|
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~------pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G 95 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNG------PFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG 95 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-------EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccC------CeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce
Confidence 379999999999999999999998886421 22222222211 11122223356888999999
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCe
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
++|||||+.|++..|..|+++|+++++. +.|.....+.+++|||+||. +.....++..|.++|+.|+..
T Consensus 96 tL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~st~~------~l~~~v~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 96 TLFLDEIEDLPPELQAKLLRVLEEGKFT--RLGSDKPVPVDVRIIASTSK------DLEELVEQGRFREDLYYRLNV 164 (168)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHHHSEEE--CCTSSSEEE--EEEEEEESS-------HHHHHHTTSS-HHHHHHHTT
T ss_pred EEeecchhhhHHHHHHHHHHHHhhchhc--cccccccccccceEEeecCc------CHHHHHHcCCChHHHHHHhce
Confidence 9999999999999999999999999854 55666677889999999994 344566777899999999864
No 59
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=1.4e-14 Score=158.24 Aligned_cols=247 Identities=15% Similarity=0.199 Sum_probs=142.9
Q ss_pred HhhcCCccCchhHHHHHHHHHhCCCccc---CCC-CccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC-CCCCCc
Q 004862 330 SKIAPSIFGHDDVKKAVSCLLFGGSRKN---LPD-GVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS-GKGSSA 404 (726)
Q Consensus 330 ~si~p~I~G~~~~k~aill~L~~~~~~~---~~~-g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~-g~~~~~ 404 (726)
..+...|+||+.+|+++..++.....+. ... ......+.|+||+||||||||++|+++++.+...+... +...+.
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 3344459999999999987774211100 000 01112447999999999999999999998876654432 111111
Q ss_pred ccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHH--------------HHHHHHHHHhcceEeeeccceEEE
Q 004862 405 AGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPE--------------DRVAIHEAMEQQTISIAKAGITTV 470 (726)
Q Consensus 405 ~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~~~g~~~~ 470 (726)
.+..+.-........+....+.+..+.+||+||||||++++. .|.+|+++||...+.+...|....
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 111100000000000111223345678899999999999764 799999999977666655454333
Q ss_pred eeCceEEEEecCCCC---CcCCCcc------------------c----------hh--------hhccCchhhhcccCee
Q 004862 471 LNSRTSVLAAANPPS---GRYDDLK------------------S----------AQ--------DNIDLQTTILSRFDLI 511 (726)
Q Consensus 471 l~~~~~iiaa~Np~~---g~~~~~~------------------~----------~~--------~~~~l~~~Ll~RFdli 511 (726)
-..++.+|+|+|+.+ |.|.... . .. ....|.|.|+.|+|.+
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~i 306 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVV 306 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCee
Confidence 346788899999832 3332100 0 00 1123688999999988
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHH-HhHccCCCCCCHHHHHHHHHH-HHHHHHHHhh
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQ-YCRLECHPRLSESASAKLRDQ-YVQIRKDMRR 589 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~-~a~~~~~p~ls~ea~~~l~~~-y~~~R~~~~~ 589 (726)
+.+.+...++ ..+|+.... ...+++|.. ++...+...+++++.+.|.+. |
T Consensus 307 v~f~~L~~~~-----L~~Il~~~~--------------~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~--------- 358 (412)
T PRK05342 307 ATLEELDEEA-----LVRILTEPK--------------NALVKQYQKLFEMDGVELEFTDEALEAIAKKAI--------- 358 (412)
T ss_pred eecCCCCHHH-----HHHHHHHHH--------------HHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCC---------
Confidence 8887666333 122222110 012334422 233446667999999998874 2
Q ss_pred hhcccCCCCCccCChhHHHHHHHH
Q 004862 590 QANETGEAAPIPITVRQLEAIVRL 613 (726)
Q Consensus 590 ~~~~~~~~~~~~~t~R~L~~lirl 613 (726)
.-..-+|.|.++++.
T Consensus 359 ---------~~~~GAR~Lrriie~ 373 (412)
T PRK05342 359 ---------ERKTGARGLRSILEE 373 (412)
T ss_pred ---------CCCCCCchHHHHHHH
Confidence 123557888887763
No 60
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.57 E-value=4.3e-15 Score=139.24 Aligned_cols=129 Identities=23% Similarity=0.410 Sum_probs=90.7
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEe--CCCCCCcccccceeeecCCCchhhhccCceeec--CCCeEEecccCcCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYT--SGKGSSAAGLTASVIRDGSSREFYLEGGAMVLA--DGGVVCIDEFDKMR 444 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~--~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la--~~gvl~iDEi~~~~ 444 (726)
||||+||||||||++++.+++.....++. ....++...+....... .+.....+|.+..+ ++++++||||++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 69999999999999999999998776543 23334444555444432 34455566666643 78899999999999
Q ss_pred HHHHHHHHHHHhcceEeeeccceEEEeeC------ceEEEEecCCCCCcCCCccchhhhccCchhhhccc
Q 004862 445 PEDRVAIHEAMEQQTISIAKAGITTVLNS------RTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 445 ~~~~~~L~~~me~~~i~i~~~g~~~~l~~------~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
++.+..|+.+++++.+.+...+.....+. .+++|||+||.. .....++++|++||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~---------~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD---------KGRKELSPALLDRF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST-----------TTTTCHHHHTT-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC---------CCcCcCCHHHHhhC
Confidence 99999999999999987666555554444 499999999863 23445999999998
No 61
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.56 E-value=8.1e-14 Score=144.94 Aligned_cols=219 Identities=20% Similarity=0.230 Sum_probs=123.7
Q ss_pred CccCchhHHHHHHHH--HhCCCcccCCCCcc-ccCcceEEEECCCchhHHHHHHHHHHhCCCc-EEeCCCC--CCccccc
Q 004862 335 SIFGHDDVKKAVSCL--LFGGSRKNLPDGVK-LRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA-VYTSGKG--SSAAGLT 408 (726)
Q Consensus 335 ~I~G~~~~k~aill~--L~~~~~~~~~~g~~-~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~-~~~~g~~--~~~~gl~ 408 (726)
+++|++.+|+.+--. ..--.......|.. ..+..|+||+||||||||++|+++++.+... ....+.. .+...+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 378999999876311 11000000011211 1223799999999999999999998764211 0000000 0000111
Q ss_pred ceeeecCCCchhhhccCceeecCCCeEEecccCcCC--------HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEe
Q 004862 409 ASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR--------PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAA 480 (726)
Q Consensus 409 ~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~--------~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa 480 (726)
.....+ +. . ...+.+..+.+||+||||++.+. .+.+..|+..|++.. .++.++++
T Consensus 87 ~~~~g~--~~-~-~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila 149 (261)
T TIGR02881 87 GEYIGH--TA-Q-KTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILA 149 (261)
T ss_pred hhhccc--hH-H-HHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------------CCEEEEec
Confidence 110000 00 0 00123445678999999999876 345678888888642 24566666
Q ss_pred cCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHh
Q 004862 481 ANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYC 560 (726)
Q Consensus 481 ~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a 560 (726)
+++.. ...-..+.++|.+||+..+.+++...++ -..|.+ +++
T Consensus 150 ~~~~~--------~~~~~~~~p~L~sRf~~~i~f~~~~~~e-l~~Il~--------------------------~~~--- 191 (261)
T TIGR02881 150 GYSDE--------MDYFLSLNPGLRSRFPISIDFPDYTVEE-LMEIAE--------------------------RMV--- 191 (261)
T ss_pred CCcch--------hHHHHhcChHHHhccceEEEECCCCHHH-HHHHHH--------------------------HHH---
Confidence 66521 1122347789999999888887655222 122222 221
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHh
Q 004862 561 RLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAK 619 (726)
Q Consensus 561 ~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~ 619 (726)
+. ....+++++.+.|..++..++... ...++|.|.+.+++..|..+..
T Consensus 192 ~~-~~~~l~~~a~~~l~~~~~~~~~~~----------~~~~gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 192 KE-REYKLTEEAKWKLREHLYKVDQLS----------SREFSNARYVRNIIEKAIRRQA 239 (261)
T ss_pred HH-cCCccCHHHHHHHHHHHHHHHhcc----------CCCCchHHHHHHHHHHHHHHHH
Confidence 11 223588999999888776654311 2456899999999998776654
No 62
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.56 E-value=3.7e-14 Score=148.02 Aligned_cols=206 Identities=19% Similarity=0.239 Sum_probs=128.2
Q ss_pred CccCchhHH---HHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccccce
Q 004862 335 SIFGHDDVK---KAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTAS 410 (726)
Q Consensus 335 ~I~G~~~~k---~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~ 410 (726)
+++||+.+- +.|--++-+|.- .+++|+||||||||+||+.|+......+.. ++..++...+-.
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l------------~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~- 91 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHL------------HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLRE- 91 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCC------------ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHH-
Confidence 478888763 233344444411 689999999999999999999987766552 111111111100
Q ss_pred eeecCCCchhhhccCc-eeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCC
Q 004862 411 VIRDGSSREFYLEGGA-MVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYD 489 (726)
Q Consensus 411 ~~~~~~~~~~~~~~G~-l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~ 489 (726)
..-++.. .....+-|+|||||++++...|..|+..||+|.|. +|+||-
T Consensus 92 ---------i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii---------------lIGATT------- 140 (436)
T COG2256 92 ---------IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII---------------LIGATT------- 140 (436)
T ss_pred ---------HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE---------------EEeccC-------
Confidence 0001100 11123459999999999999999999999999854 556652
Q ss_pred CccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCC
Q 004862 490 DLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLS 569 (726)
Q Consensus 490 ~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls 569 (726)
....+.+.++|+||. .+|.+.+..+++-...+.+........-. ...+.++
T Consensus 141 ----ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~------------------------~~~~~i~ 191 (436)
T COG2256 141 ----ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLG------------------------GQIIVLD 191 (436)
T ss_pred ----CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCC------------------------cccccCC
Confidence 223455889999997 56667766644422222222222111000 0234588
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 570 ESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 570 ~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
++|.+.|... ..+..|.+.++++++...++-.. ..+.+++.+.+
T Consensus 192 ~~a~~~l~~~--------------------s~GD~R~aLN~LE~~~~~~~~~~--~~~~~~l~~~l 235 (436)
T COG2256 192 EEALDYLVRL--------------------SNGDARRALNLLELAALSAEPDE--VLILELLEEIL 235 (436)
T ss_pred HHHHHHHHHh--------------------cCchHHHHHHHHHHHHHhcCCCc--ccCHHHHHHHH
Confidence 9999999886 34788999999998887776332 33366666554
No 63
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.55 E-value=6.3e-14 Score=152.19 Aligned_cols=253 Identities=16% Similarity=0.201 Sum_probs=144.7
Q ss_pred HHHHHhhcCCccCchhHHHHHHHHHhCCCcc------cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-C
Q 004862 326 KTVCSKIAPSIFGHDDVKKAVSCLLFGGSRK------NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-S 398 (726)
Q Consensus 326 ~~l~~si~p~I~G~~~~k~aill~L~~~~~~------~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~ 398 (726)
..|.+.+...|+||+.+|+++..++...... ...+...-.+..|+||+||||||||++|+++|+.+...+.. .
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 4455667777999999999999887421100 00000011234699999999999999999999887544332 1
Q ss_pred CCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCH--------------HHHHHHHHHHhcceE-eee
Q 004862 399 GKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP--------------EDRVAIHEAMEQQTI-SIA 463 (726)
Q Consensus 399 g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~--------------~~~~~L~~~me~~~i-~i~ 463 (726)
....+..|+.+.-.....+......++.+..+.+||+||||++++++ ..|..|+++|| |++ .+.
T Consensus 149 a~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~ 227 (413)
T TIGR00382 149 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVP 227 (413)
T ss_pred hhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecc
Confidence 11111111111000000000011224455667889999999999987 68999999997 554 333
Q ss_pred ccceEEEeeCceEEEEecCCC---CCcCCCc-------------------cc-------h--------hhhccCchhhhc
Q 004862 464 KAGITTVLNSRTSVLAAANPP---SGRYDDL-------------------KS-------A--------QDNIDLQTTILS 506 (726)
Q Consensus 464 ~~g~~~~l~~~~~iiaa~Np~---~g~~~~~-------------------~~-------~--------~~~~~l~~~Ll~ 506 (726)
..|....-..++.+|.|+|.. .|-|... .. . .....|.|.|+.
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 333332223568889999982 1333110 00 0 012237899999
Q ss_pred ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHH-HhHccCCCCCCHHHHHHHHHHHHHHHH
Q 004862 507 RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQ-YCRLECHPRLSESASAKLRDQYVQIRK 585 (726)
Q Consensus 507 RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~-~a~~~~~p~ls~ea~~~l~~~y~~~R~ 585 (726)
|+|.+..+.+...++ ..+|+..... ..+++|-. +....+.-.++++|.+.|.+.-
T Consensus 308 Rld~Iv~f~pL~~~~-----L~~Il~~~~n--------------~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~----- 363 (413)
T TIGR00382 308 RLPVIATLEKLDEEA-----LIAILTKPKN--------------ALVKQYQALFKMDNVELDFEEEALKAIAKKA----- 363 (413)
T ss_pred CCCeEeecCCCCHHH-----HHHHHHHHHH--------------HHHHHHHHHhccCCeEEEECHHHHHHHHHhC-----
Confidence 999888877665333 1222222110 12333422 2223355578999999888751
Q ss_pred HHhhhhcccCCCCCccCChhHHHHHHHHHH
Q 004862 586 DMRRQANETGEAAPIPITVRQLEAIVRLSE 615 (726)
Q Consensus 586 ~~~~~~~~~~~~~~~~~t~R~L~~lirla~ 615 (726)
..-...+|.|.++++...
T Consensus 364 ------------~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 364 ------------LERKTGARGLRSIVEGLL 381 (413)
T ss_pred ------------CCCCCCchHHHHHHHHhh
Confidence 123356788888887443
No 64
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.8e-13 Score=140.72 Aligned_cols=190 Identities=25% Similarity=0.282 Sum_probs=118.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccccceeeecCCCchhhhccCceeecC---CCeEEecccCcC-
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASVIRDGSSREFYLEGGAMVLAD---GGVVCIDEFDKM- 443 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~---~gvl~iDEi~~~- 443 (726)
.|||+||||||||+||+++|+...-.+.- .| ..|.-..+. .|.. +....+.+|. ..|+||||||.+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg-----SElVqKYiG---EGaR-lVRelF~lArekaPsIIFiDEIDAIg 257 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVG-----SELVQKYIG---EGAR-LVRELFELAREKAPSIIFIDEIDAIG 257 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEecc-----HHHHHHHhc---cchH-HHHHHHHHHhhcCCeEEEEechhhhh
Confidence 49999999999999999999876544331 11 001000000 0000 1111223332 469999999986
Q ss_pred ----------CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCee
Q 004862 444 ----------RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLI 511 (726)
Q Consensus 444 ----------~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli 511 (726)
+.+.|-.|++.+.|-- |- .-..++.||+|||.+. -|.|+||+ |||-.
T Consensus 258 ~kR~d~~t~gDrEVQRTmleLL~qlD------GF--D~~~nvKVI~ATNR~D-------------~LDPALLRPGR~DRk 316 (406)
T COG1222 258 AKRFDSGTSGDREVQRTMLELLNQLD------GF--DPRGNVKVIMATNRPD-------------ILDPALLRPGRFDRK 316 (406)
T ss_pred cccccCCCCchHHHHHHHHHHHHhcc------CC--CCCCCeEEEEecCCcc-------------ccChhhcCCCcccce
Confidence 3457888888886521 11 1134689999999641 26777775 89977
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
+.++ .| |..=+..|+++|.....-. ..++.+.|-+ +
T Consensus 317 IEfp-lP----d~~gR~~Il~IHtrkM~l~----~dvd~e~la~--------------------~--------------- 352 (406)
T COG1222 317 IEFP-LP----DEEGRAEILKIHTRKMNLA----DDVDLELLAR--------------------L--------------- 352 (406)
T ss_pred eecC-CC----CHHHHHHHHHHHhhhccCc----cCcCHHHHHH--------------------h---------------
Confidence 7666 34 3344778888887654321 1222222211 1
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFT 639 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 639 (726)
.-..|-.++.++..-|--+|-=+.+..|+.+|+.+|+.-+.
T Consensus 353 -------~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 353 -------TEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred -------cCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 12256678888888888888778899999999999996543
No 65
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.52 E-value=3.7e-13 Score=155.11 Aligned_cols=252 Identities=17% Similarity=0.193 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHhcCcchHHHHHHh----hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHH
Q 004862 308 TQEEIEKFKKFASQPDAYKTVCSK----IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQF 383 (726)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~s----i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~l 383 (726)
+-+++..++++.+ ..+-+-+... -+++|+|++...++++-++.... ..|++|+||||||||++
T Consensus 125 ~~~~~~~l~~~~~-~~~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~------------~~~vlL~Gp~GtGKTTL 191 (615)
T TIGR02903 125 TLKKLERLEKLEK-KKLHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPF------------PQHIILYGPPGVGKTTA 191 (615)
T ss_pred HHHHHHHHHHHHH-HHhhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCC------------CCeEEEECCCCCCHHHH
Confidence 4455555555421 1222333333 45568899998888766664331 25899999999999999
Q ss_pred HHHHHHhCCCc-----------EEeCCCCCCc--c----cccceeeecC----------CCchhhhccCceeecCCCeEE
Q 004862 384 LKFVEKTAPIA-----------VYTSGKGSSA--A----GLTASVIRDG----------SSREFYLEGGAMVLADGGVVC 436 (726)
Q Consensus 384 a~~i~~~~~~~-----------~~~~g~~~~~--~----gl~~~~~~~~----------~~~~~~~~~G~l~la~~gvl~ 436 (726)
|+.++...... +...+..... . .+... ..++ .++......|.+..+++|++|
T Consensus 192 Ar~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~-~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~ 270 (615)
T TIGR02903 192 ARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGS-VHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLF 270 (615)
T ss_pred HHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCC-ccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEE
Confidence 99998766321 1112211100 0 00000 0000 001112335566678899999
Q ss_pred ecccCcCCHHHHHHHHHHHhcceEeeeccceE---------------EEeeCceEEEEecCCCCCcCCCccchhhhccCc
Q 004862 437 IDEFDKMRPEDRVAIHEAMEQQTISIAKAGIT---------------TVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQ 501 (726)
Q Consensus 437 iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~---------------~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~ 501 (726)
|||++.|++..|..|+.+|+++.+.+...... ...+.++.++++++... ..++
T Consensus 271 LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~------------~~l~ 338 (615)
T TIGR02903 271 IDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP------------EEIN 338 (615)
T ss_pred EeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc------------cccC
Confidence 99999999999999999999998765432110 11245577777665310 1367
Q ss_pred hhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHH
Q 004862 502 TTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYV 581 (726)
Q Consensus 502 ~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~ 581 (726)
++|.+||..+ .+++.. .+.-..|.++.+. .....+++++.+.|.+|
T Consensus 339 ~aLrSR~~~i-~~~pls-~edi~~Il~~~a~------------------------------~~~v~ls~eal~~L~~y-- 384 (615)
T TIGR02903 339 PALRSRCAEV-FFEPLT-PEDIALIVLNAAE------------------------------KINVHLAAGVEELIARY-- 384 (615)
T ss_pred HHHHhceeEE-EeCCCC-HHHHHHHHHHHHH------------------------------HcCCCCCHHHHHHHHHC--
Confidence 8999999854 344433 2212233322211 12234788888888886
Q ss_pred HHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhh--------CCCcccHHHHHHHHHHH
Q 004862 582 QIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMK--------LSHVATENEVNEAVRLF 638 (726)
Q Consensus 582 ~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~--------~~~~V~~~Dv~~ai~l~ 638 (726)
.|++ |...+++..+...+..+ ....|+.+|+.+++..-
T Consensus 385 -----------------s~~g--Rraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 385 -----------------TIEG--RKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred -----------------CCcH--HHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 4644 55555555444433111 12368999999998643
No 66
>PHA02244 ATPase-like protein
Probab=99.52 E-value=3.1e-13 Score=142.62 Aligned_cols=137 Identities=19% Similarity=0.255 Sum_probs=96.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCcee--ecCCCeEEecccCcCCH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMV--LADGGVVCIDEFDKMRP 445 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~--la~~gvl~iDEi~~~~~ 445 (726)
.||||.||||||||++|++++......++..........+... .. ..+.| ..|.+. ++.||+|+|||++.+++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~-i~--~~g~~--~dgpLl~A~~~GgvLiLDEId~a~p 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGF-ID--ANGKF--HETPFYEAFKKGGLFFIDEIDASIP 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccc-cc--ccccc--cchHHHHHhhcCCEEEEeCcCcCCH
Confidence 7999999999999999999999887766542211111111111 11 12223 333332 56899999999999999
Q ss_pred HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEe
Q 004862 446 EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIV 514 (726)
Q Consensus 446 ~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l 514 (726)
+.+..|+.+++++.+. ..|.....+.++++|||+||....|+. .......+++++++||- ++.+
T Consensus 195 ~vq~~L~~lLd~r~l~--l~g~~i~~h~~FRlIATsN~~~~G~~~--~y~G~k~L~~AllDRFv-~I~~ 258 (383)
T PHA02244 195 EALIIINSAIANKFFD--FADERVTAHEDFRVISAGNTLGKGADH--IYVARNKIDGATLDRFA-PIEF 258 (383)
T ss_pred HHHHHHHHHhccCeEE--ecCcEEecCCCEEEEEeeCCCccCccc--ccCCCcccCHHHHhhcE-EeeC
Confidence 9999999999998755 456666777899999999996533432 12245568999999994 4444
No 67
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.2e-13 Score=144.17 Aligned_cols=213 Identities=24% Similarity=0.351 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHH
Q 004862 310 EEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.|+++|.++-++|.-|..| || ++|.| |||+||||||||+|||+++.
T Consensus 314 ~ELeEiVefLkdP~kftrL-----------------------GG---KLPKG--------VLLvGPPGTGKTlLARAvAG 359 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRL-----------------------GG---KLPKG--------VLLVGPPGTGKTLLARAVAG 359 (752)
T ss_pred HHHHHHHHHhcCcHHhhhc-----------------------cC---cCCCc--------eEEeCCCCCchhHHHHHhhc
Confidence 4566777777777666543 45 34444 99999999999999999999
Q ss_pred hCCCcEEe-CCCCCC--cccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHH----HH----HHHHHHHhcc
Q 004862 390 TAPIAVYT-SGKGSS--AAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPE----DR----VAIHEAMEQQ 458 (726)
Q Consensus 390 ~~~~~~~~-~g~~~~--~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~----~~----~~L~~~me~~ 458 (726)
.+...+|. +|.... ++|..+.-+|+- |. .+ - .....|+||||||..... ++ ..|.+.+-+
T Consensus 360 EA~VPFF~~sGSEFdEm~VGvGArRVRdL----F~-aA--k-~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvE- 430 (752)
T KOG0734|consen 360 EAGVPFFYASGSEFDEMFVGVGARRVRDL----FA-AA--K-ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVE- 430 (752)
T ss_pred ccCCCeEeccccchhhhhhcccHHHHHHH----HH-HH--H-hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHH-
Confidence 98887764 222111 123222222210 10 00 0 112469999999987321 22 233333221
Q ss_pred eEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh--cccCeeeEeccCCChhhhHHHHHHHHHHhhh
Q 004862 459 TISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL--SRFDLIFIVKDIRMYNQDKLIASHIIKIHAS 536 (726)
Q Consensus 459 ~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll--~RFdli~~l~d~~~~~~d~~i~~~il~~~~~ 536 (726)
-.| ..-+..+.||||||-+. .|.++|+ -|||..+.++.+.-+. +..|++.|..
T Consensus 431 -----mDG--F~qNeGiIvigATNfpe-------------~LD~AL~RPGRFD~~v~Vp~PDv~G-----R~eIL~~yl~ 485 (752)
T KOG0734|consen 431 -----MDG--FKQNEGIIVIGATNFPE-------------ALDKALTRPGRFDRHVTVPLPDVRG-----RTEILKLYLS 485 (752)
T ss_pred -----hcC--cCcCCceEEEeccCChh-------------hhhHHhcCCCccceeEecCCCCccc-----HHHHHHHHHh
Confidence 011 11244688999999642 1444554 3899888876554333 3444444433
Q ss_pred cccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHH
Q 004862 537 ADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEA 616 (726)
Q Consensus 537 ~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a 616 (726)
... +++++-..+.. +..-.+|-..|++++-.|--
T Consensus 486 ki~----------------------------~~~~VD~~iiA------------------RGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 486 KIP----------------------------LDEDVDPKIIA------------------RGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred cCC----------------------------cccCCCHhHhc------------------cCCCCCchHHHHHHHHHHHH
Confidence 211 22222111211 12445788899999999999
Q ss_pred HHhhhCCCcccHHHHHHHHH
Q 004862 617 LAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 617 ~A~l~~~~~V~~~Dv~~ai~ 636 (726)
.|..++...|+..|++.|-.
T Consensus 520 kAa~dga~~VtM~~LE~akD 539 (752)
T KOG0734|consen 520 KAAVDGAEMVTMKHLEFAKD 539 (752)
T ss_pred HHHhcCcccccHHHHhhhhh
Confidence 99999999999999999864
No 68
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.5e-13 Score=146.18 Aligned_cols=243 Identities=18% Similarity=0.205 Sum_probs=143.4
Q ss_pred HHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccc
Q 004862 329 CSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLT 408 (726)
Q Consensus 329 ~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~ 408 (726)
..-+..+-||.+.+|.-|+-.|+-+.....-.| .-+||+||||+|||+|+++||+.+.|.++-. +-.|+
T Consensus 318 ~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kG------pILcLVGPPGVGKTSLgkSIA~al~RkfvR~----sLGGv- 386 (782)
T COG0466 318 EKILDKDHYGLEKVKERILEYLAVQKLTKKLKG------PILCLVGPPGVGKTSLGKSIAKALGRKFVRI----SLGGV- 386 (782)
T ss_pred HHHhcccccCchhHHHHHHHHHHHHHHhccCCC------cEEEEECCCCCCchhHHHHHHHHhCCCEEEE----ecCcc-
Confidence 344677789999999999877765532222223 6799999999999999999999999987632 11121
Q ss_pred ceeeecC--CCch---h-hhccCceee------cCCCeEEecccCcCCHHHH----HHHHHHHh-cceEeeeccceEEEe
Q 004862 409 ASVIRDG--SSRE---F-YLEGGAMVL------ADGGVVCIDEFDKMRPEDR----VAIHEAME-QQTISIAKAGITTVL 471 (726)
Q Consensus 409 ~~~~~~~--~~~~---~-~~~~G~l~l------a~~gvl~iDEi~~~~~~~~----~~L~~~me-~~~i~i~~~g~~~~l 471 (726)
+|. ..|. | ..-||.++. ..+-+++|||||+|..+.| ++|+|+++ +|.-++...-....+
T Consensus 387 ----rDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~y 462 (782)
T COG0466 387 ----RDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPY 462 (782)
T ss_pred ----ccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCcc
Confidence 221 0111 1 123555432 3467999999999976654 89999998 444334332221111
Q ss_pred -eCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCH
Q 004862 472 -NSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEE 550 (726)
Q Consensus 472 -~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 550 (726)
-+++.+|||+|.. ..+|.||++|..++- +.-.. +++-..||+..+--.+..... +.
T Consensus 463 DLS~VmFiaTANsl-------------~tIP~PLlDRMEiI~-lsgYt-~~EKl~IAk~~LiPk~~~~~g-------L~- 519 (782)
T COG0466 463 DLSKVMFIATANSL-------------DTIPAPLLDRMEVIR-LSGYT-EDEKLEIAKRHLIPKQLKEHG-------LK- 519 (782)
T ss_pred chhheEEEeecCcc-------------ccCChHHhcceeeee-ecCCC-hHHHHHHHHHhcchHHHHHcC-------CC-
Confidence 1468999999952 138999999997665 33333 233455554333211111100 00
Q ss_pred HHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHH-HHHHhhhCCC--ccc
Q 004862 551 NWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLS-EALAKMKLSH--VAT 627 (726)
Q Consensus 551 ~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla-~a~A~l~~~~--~V~ 627 (726)
.-.-.++++|...|.+||. |..+ ...=-|++..++|-+ ..+..-.... .|+
T Consensus 520 ------------~~el~i~d~ai~~iI~~YT--REAG------------VR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~ 573 (782)
T COG0466 520 ------------KGELTITDEAIKDIIRYYT--REAG------------VRNLEREIAKICRKAAKKILLKKEKSIVKID 573 (782)
T ss_pred ------------ccceeecHHHHHHHHHHHh--Hhhh------------hhHHHHHHHHHHHHHHHHHHhcCcccceeeC
Confidence 0112589999999999996 3322 112225555555532 2222212222 467
Q ss_pred HHHHHHHH
Q 004862 628 ENEVNEAV 635 (726)
Q Consensus 628 ~~Dv~~ai 635 (726)
..++.+-+
T Consensus 574 ~~~l~~yL 581 (782)
T COG0466 574 EKNLKKYL 581 (782)
T ss_pred HHHHHHHh
Confidence 77777655
No 69
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.41 E-value=4.1e-12 Score=149.65 Aligned_cols=243 Identities=17% Similarity=0.216 Sum_probs=139.3
Q ss_pred HHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC--CCCCCcc
Q 004862 328 VCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS--GKGSSAA 405 (726)
Q Consensus 328 l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~--g~~~~~~ 405 (726)
...-+..++||++.+|+.|+-.|........ .++ ..++|+||||+|||++++.++..+++..+.. |......
T Consensus 316 ~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~-----~~g-~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~ 389 (784)
T PRK10787 316 AQEILDTDHYGLERVKDRILEYLAVQSRVNK-----IKG-PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEA 389 (784)
T ss_pred HHHHhhhhccCHHHHHHHHHHHHHHHHhccc-----CCC-ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 3445667799999999999855543211111 122 4699999999999999999999888775432 1111111
Q ss_pred cccceeeecCCCchh-hhccCcee------ecCCCeEEecccCcCCHHH----HHHHHHHHhc-ceEeeeccceEEEe-e
Q 004862 406 GLTASVIRDGSSREF-YLEGGAMV------LADGGVVCIDEFDKMRPED----RVAIHEAMEQ-QTISIAKAGITTVL-N 472 (726)
Q Consensus 406 gl~~~~~~~~~~~~~-~~~~G~l~------la~~gvl~iDEi~~~~~~~----~~~L~~~me~-~~i~i~~~g~~~~l-~ 472 (726)
.+.... ..| ...+|.+. ...+.|++|||||++.++. +++|+++|+. +..++...-....+ -
T Consensus 390 ~i~g~~------~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 390 EIRGHR------RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred Hhccch------hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccC
Confidence 111100 001 01233321 1235699999999998875 4899999985 44444322221111 1
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
.++.+|||+|.. .++++|++||++ +.+.... .++-..|+++.+....
T Consensus 464 s~v~~i~TaN~~--------------~i~~aLl~R~~i-i~~~~~t-~eek~~Ia~~~L~~k~----------------- 510 (784)
T PRK10787 464 SDVMFVATSNSM--------------NIPAPLLDRMEV-IRLSGYT-EDEKLNIAKRHLLPKQ----------------- 510 (784)
T ss_pred CceEEEEcCCCC--------------CCCHHHhcceee-eecCCCC-HHHHHHHHHHhhhHHH-----------------
Confidence 468899999831 389999999975 4455555 3334555555442111
Q ss_pred HHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHH-HHHH-HhhhCC-----Cc
Q 004862 553 LKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRL-SEAL-AKMKLS-----HV 625 (726)
Q Consensus 553 L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirl-a~a~-A~l~~~-----~~ 625 (726)
+++. ........+++++.+.|.+.|. -..-+|.|++++.. ++.. +++-+. -.
T Consensus 511 ~~~~---~l~~~~l~i~~~ai~~ii~~yt------------------~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~ 569 (784)
T PRK10787 511 IERN---ALKKGELTVDDSAIIGIIRYYT------------------REAGVRSLEREISKLCRKAVKQLLLDKSLKHIE 569 (784)
T ss_pred HHHh---CCCCCeEEECHHHHHHHHHhCC------------------cccCCcHHHHHHHHHHHHHHHHHHhcCCCceee
Confidence 1110 0011234688999988887663 12345666665542 2211 122111 25
Q ss_pred ccHHHHHHHHH
Q 004862 626 ATENEVNEAVR 636 (726)
Q Consensus 626 V~~~Dv~~ai~ 636 (726)
|+.+++.+.+.
T Consensus 570 v~~~~~~~~lg 580 (784)
T PRK10787 570 INGDNLHDYLG 580 (784)
T ss_pred ecHHHHHHHhC
Confidence 88888887663
No 70
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=9.6e-12 Score=145.36 Aligned_cols=243 Identities=14% Similarity=0.174 Sum_probs=143.8
Q ss_pred chHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCC
Q 004862 323 DAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGS 402 (726)
Q Consensus 323 ~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~ 402 (726)
..+..|...+--.|+||+.+++.+.-++.-... .+.+ ..+...++||+||||||||.+|+.+++.+...+..... +
T Consensus 447 ~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~-gl~~--~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~-s 522 (758)
T PRK11034 447 DTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRA-GLGH--EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM-S 522 (758)
T ss_pred HHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhc-cccC--CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeec-h
Confidence 455667888999999999998887766642100 0000 11222479999999999999999999988654332110 0
Q ss_pred Cccc--ccceeeecCCCchhhh-ccCce----eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 403 SAAG--LTASVIRDGSSREFYL-EGGAM----VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 403 ~~~g--l~~~~~~~~~~~~~~~-~~G~l----~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
.... ........+ .+...+ ..|.+ .....+|++||||++++++.++.|+++|++|.++.. .|....+ .++
T Consensus 523 e~~~~~~~~~LiG~~-~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~-~g~~vd~-rn~ 599 (758)
T PRK11034 523 EYMERHTVSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKADF-RNV 599 (758)
T ss_pred hhcccccHHHHcCCC-CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC-CCceecC-CCc
Confidence 0000 000000000 011111 12222 223568999999999999999999999999998743 3333222 357
Q ss_pred EEEEecCCC--------CCcCCCccc-----hhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccc
Q 004862 476 SVLAAANPP--------SGRYDDLKS-----AQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSA 542 (726)
Q Consensus 476 ~iiaa~Np~--------~g~~~~~~~-----~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~ 542 (726)
.+|+|+|.- .| |..... ..-...|.|.|+.|+|.++.+.+...++- ..|+...+..
T Consensus 600 iiI~TsN~g~~~~~~~~~g-~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l-~~I~~~~l~~--------- 668 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIG-LIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVI-HQVVDKFIVE--------- 668 (758)
T ss_pred EEEEeCCcCHHHHhhcccC-cccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHH-HHHHHHHHHH---------
Confidence 799999942 11 110000 01124588999999999888877764432 3343333321
Q ss_pred cccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHH
Q 004862 543 DSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVR 612 (726)
Q Consensus 543 ~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lir 612 (726)
+.+-+ .+..+.-.+++++.++|...- .+-...+|.|+++|+
T Consensus 669 ----------~~~~l--~~~~i~l~~~~~~~~~l~~~~-----------------~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 669 ----------LQAQL--DQKGVSLEVSQEARDWLAEKG-----------------YDRAMGARPMARVIQ 709 (758)
T ss_pred ----------HHHHH--HHCCCCceECHHHHHHHHHhC-----------------CCCCCCCchHHHHHH
Confidence 11111 223366679999999887641 122356788888876
No 71
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.9e-12 Score=140.42 Aligned_cols=203 Identities=18% Similarity=0.276 Sum_probs=124.4
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccce-
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTAS- 410 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~- 410 (726)
+..+-||++++|+-|+-.++-|.-+....| .-++|+||||+|||.++++||+.+.|.++-- +..|++.-
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qG------kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf----SvGG~tDvA 478 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQG------KILCFVGPPGVGKTSIAKSIARALNRKFFRF----SVGGMTDVA 478 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCC------cEEEEeCCCCCCcccHHHHHHHHhCCceEEE----eccccccHH
Confidence 566789999999999988876633332233 4699999999999999999999999987742 22233211
Q ss_pred eeecCCCchh-hhccCcee------ecCCCeEEecccCcCCHHH----HHHHHHHHh-cceEeeeccceEEEe-eCceEE
Q 004862 411 VIRDGSSREF-YLEGGAMV------LADGGVVCIDEFDKMRPED----RVAIHEAME-QQTISIAKAGITTVL-NSRTSV 477 (726)
Q Consensus 411 ~~~~~~~~~~-~~~~G~l~------la~~gvl~iDEi~~~~~~~----~~~L~~~me-~~~i~i~~~g~~~~l-~~~~~i 477 (726)
-++.. ...| ..-||.++ ...+-+++|||||++.... -++|+|+|+ +|.-++...-....+ -+++.+
T Consensus 479 eIkGH-RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 479 EIKGH-RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred hhccc-ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 11110 0111 12355553 3456799999999986433 379999998 344333222111111 136889
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHH-HhhhcccccccccccCCHHHHHHH
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIK-IHASADAVSADSKVSKEENWLKRY 556 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~-~~~~~~~~~~~~~~~~~~~~L~~y 556 (726)
|||+|.. -.+|++|++|..+|-. .-.. .++-..||+..+- ....... ++.+
T Consensus 558 icTAN~i-------------dtIP~pLlDRMEvIel-sGYv-~eEKv~IA~~yLip~a~~~~g--------l~~e----- 609 (906)
T KOG2004|consen 558 ICTANVI-------------DTIPPPLLDRMEVIEL-SGYV-AEEKVKIAERYLIPQALKDCG--------LKPE----- 609 (906)
T ss_pred EEecccc-------------ccCChhhhhhhheeec-cCcc-HHHHHHHHHHhhhhHHHHHcC--------CCHH-----
Confidence 9999953 2489999999987652 2222 2334455544332 2111110 1110
Q ss_pred HHHhHccCCCCCCHHHHHHHHHHHH
Q 004862 557 IQYCRLECHPRLSESASAKLRDQYV 581 (726)
Q Consensus 557 i~~a~~~~~p~ls~ea~~~l~~~y~ 581 (726)
+..++++|...|..+|.
T Consensus 610 --------~v~is~~al~~lI~~Yc 626 (906)
T KOG2004|consen 610 --------QVKISDDALLALIERYC 626 (906)
T ss_pred --------hcCccHHHHHHHHHHHH
Confidence 12588888888888875
No 72
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=2.7e-11 Score=135.04 Aligned_cols=212 Identities=19% Similarity=0.177 Sum_probs=126.8
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe----C---------
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT----S--------- 398 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~----~--------- 398 (726)
-+.+|+||+.+++.+.-++..+. -..++||+||||||||++|+++++.+.-.... +
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~-----------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i 80 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNS-----------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI 80 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence 34468999999888877776651 11348999999999999999998876431110 0
Q ss_pred --CCCCCcccccceeeecCCCchhh-h--ccC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 399 --GKGSSAAGLTASVIRDGSSREFY-L--EGG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 399 --g~~~~~~gl~~~~~~~~~~~~~~-~--~~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
|.......+.++..+. ..... + ... .-..++..+++|||++.|..+.+..|+..||+. +
T Consensus 81 ~~g~~~dv~el~aa~~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-------------~ 145 (472)
T PRK14962 81 DEGTFMDVIELDAASNRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP-------------P 145 (472)
T ss_pred hcCCCCccEEEeCcccCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-------------C
Confidence 0000111111111000 00000 0 000 012345679999999999999999999999862 1
Q ss_pred CceEEE-EecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHH
Q 004862 473 SRTSVL-AAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEEN 551 (726)
Q Consensus 473 ~~~~ii-aa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 551 (726)
..+.+| +++||. .+++++.+|+. ++.+.+... +
T Consensus 146 ~~vv~Ilattn~~--------------kl~~~L~SR~~-vv~f~~l~~-------------------------------~ 179 (472)
T PRK14962 146 SHVVFVLATTNLE--------------KVPPTIISRCQ-VIEFRNISD-------------------------------E 179 (472)
T ss_pred CcEEEEEEeCChH--------------hhhHHHhcCcE-EEEECCccH-------------------------------H
Confidence 123444 455431 36889999996 444544332 2
Q ss_pred HHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHH
Q 004862 552 WLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEV 631 (726)
Q Consensus 552 ~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv 631 (726)
.+..++..+-..-...++++|.+.|.++ ..++.|.+.+.+..+.+.+ ...|+.+||
T Consensus 180 el~~~L~~i~~~egi~i~~eal~~Ia~~--------------------s~GdlR~aln~Le~l~~~~----~~~It~e~V 235 (472)
T PRK14962 180 LIIKRLQEVAEAEGIEIDREALSFIAKR--------------------ASGGLRDALTMLEQVWKFS----EGKITLETV 235 (472)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------hCCCHHHHHHHHHHHHHhc----CCCCCHHHH
Confidence 2223332221112335899999999875 2378888888886544432 235999999
Q ss_pred HHHHHHHh
Q 004862 632 NEAVRLFT 639 (726)
Q Consensus 632 ~~ai~l~~ 639 (726)
.+++....
T Consensus 236 ~~~l~~~~ 243 (472)
T PRK14962 236 HEALGLIP 243 (472)
T ss_pred HHHHcCCC
Confidence 99875443
No 73
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.37 E-value=5.2e-12 Score=150.19 Aligned_cols=175 Identities=19% Similarity=0.222 Sum_probs=103.2
Q ss_pred HHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC-CCC-CC
Q 004862 326 KTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS-GKG-SS 403 (726)
Q Consensus 326 ~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~-g~~-~~ 403 (726)
..+...+..+++|++.+|+.+.-.+.....+... ++ .++||+||||||||++|+++++.+.+.++.. ..+ ..
T Consensus 312 ~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~-----~~-~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~ 385 (775)
T TIGR00763 312 KRAKEILDEDHYGLKKVKERILEYLAVQKLRGKM-----KG-PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRD 385 (775)
T ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCC-----CC-ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCccc
Confidence 3456677888999999999987655422111111 12 4899999999999999999999987665532 111 01
Q ss_pred cccccceeeecCCCchhh-hccCce----e--ecCCCeEEecccCcCCHHHH----HHHHHHHhc---ceEeeeccceEE
Q 004862 404 AAGLTASVIRDGSSREFY-LEGGAM----V--LADGGVVCIDEFDKMRPEDR----VAIHEAMEQ---QTISIAKAGITT 469 (726)
Q Consensus 404 ~~gl~~~~~~~~~~~~~~-~~~G~l----~--la~~gvl~iDEi~~~~~~~~----~~L~~~me~---~~i~i~~~g~~~ 469 (726)
...+... . ..|. ..+|.+ . ...+.|++|||||++.+..+ ++|+++|+. +.+.-...+...
T Consensus 386 ~~~i~g~-~-----~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~ 459 (775)
T TIGR00763 386 EAEIRGH-R-----RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPF 459 (775)
T ss_pred HHHHcCC-C-----CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCcee
Confidence 1111100 0 0000 011211 1 22456999999999976543 789999984 222211112222
Q ss_pred EeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHH
Q 004862 470 VLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIAS 528 (726)
Q Consensus 470 ~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~ 528 (726)
.+ .++.+|+|||+.. .++++|++||++ +.++.+.. +....|++
T Consensus 460 d~-s~v~~I~TtN~~~-------------~i~~~L~~R~~v-i~~~~~~~-~e~~~I~~ 502 (775)
T TIGR00763 460 DL-SKVIFIATANSID-------------TIPRPLLDRMEV-IELSGYTE-EEKLEIAK 502 (775)
T ss_pred cc-CCEEEEEecCCch-------------hCCHHHhCCeeE-EecCCCCH-HHHHHHHH
Confidence 22 4678999999641 388999999974 45555553 33344443
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=3.5e-11 Score=132.03 Aligned_cols=216 Identities=14% Similarity=0.125 Sum_probs=130.5
Q ss_pred HHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE----eCCCC--
Q 004862 328 VCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY----TSGKG-- 401 (726)
Q Consensus 328 l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~----~~g~~-- 401 (726)
..-.-+.+++||+.+.+.|.-++..+. -.+.+||+||||||||++|+.+++.+.-... .+|.-
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~r-----------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSGK-----------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 333344568899999998888777661 1134899999999999999999887653211 11110
Q ss_pred ---------CCcccccceeeecCCCchh-hhccCce---eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceE
Q 004862 402 ---------SSAAGLTASVIRDGSSREF-YLEGGAM---VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGIT 468 (726)
Q Consensus 402 ---------~~~~gl~~~~~~~~~~~~~-~~~~G~l---~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~ 468 (726)
.....+.++.... .... .+..... .....-|++|||++.|+.+.+++|+..||+-
T Consensus 81 C~~i~~g~~~dviEIdaas~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP---------- 148 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP---------- 148 (484)
T ss_pred HHHHHccCCccceeechhhccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC----------
Confidence 0011111110000 0000 0000000 0112349999999999999999999999862
Q ss_pred EEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccC
Q 004862 469 TVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSK 548 (726)
Q Consensus 469 ~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 548 (726)
+..+.+|.+||. ...++++++||+. .|.+...+
T Consensus 149 ---p~~viFILaTte-------------~~kI~~TI~SRCq-~~~f~~ls------------------------------ 181 (484)
T PRK14956 149 ---PAHIVFILATTE-------------FHKIPETILSRCQ-DFIFKKVP------------------------------ 181 (484)
T ss_pred ---CCceEEEeecCC-------------hhhccHHHHhhhh-eeeecCCC------------------------------
Confidence 234566666652 2248899999985 33343333
Q ss_pred CHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccH
Q 004862 549 EENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATE 628 (726)
Q Consensus 549 ~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~ 628 (726)
.+.+.+|+.+.-..-...++++|...|.++ ..+++|...+++..+.+.+ ...|+.
T Consensus 182 -~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--------------------S~Gd~RdAL~lLeq~i~~~----~~~it~ 236 (484)
T PRK14956 182 -LSVLQDYSEKLCKIENVQYDQEGLFWIAKK--------------------GDGSVRDMLSFMEQAIVFT----DSKLTG 236 (484)
T ss_pred -HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCChHHHHHHHHHHHHHhC----CCCcCH
Confidence 233333333322112335899999999886 3488999999997665543 346899
Q ss_pred HHHHHHHHHH
Q 004862 629 NEVNEAVRLF 638 (726)
Q Consensus 629 ~Dv~~ai~l~ 638 (726)
++|.+.+.+.
T Consensus 237 ~~V~~~lg~~ 246 (484)
T PRK14956 237 VKIRKMIGYH 246 (484)
T ss_pred HHHHHHhCCC
Confidence 9998776443
No 75
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.36 E-value=5.3e-12 Score=138.41 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=115.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceee---cCCCeEEecccCcC-
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVL---ADGGVVCIDEFDKM- 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~l---a~~gvl~iDEi~~~- 443 (726)
.++||+||||||||++|++++..+...++.. +...+...... .+.+... ..+.. ...+|+||||+|.+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v----~~~~l~~~~~g---~~~~~i~-~~f~~a~~~~p~IlfiDEiD~l~ 237 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRV----VGSELVQKFIG---EGARLVR-ELFELAREKAPSIIFIDEIDAIA 237 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEEEe----ehHHHhHhhcc---chHHHHH-HHHHHHHhcCCeEEEEechhhhh
Confidence 5799999999999999999998877654421 00111110000 0111110 11111 23579999999997
Q ss_pred ----------CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCee
Q 004862 444 ----------RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLI 511 (726)
Q Consensus 444 ----------~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli 511 (726)
+.+.+..+.+.+.+-. |. .-..++.||||||.+. .++++|++ |||..
T Consensus 238 ~~r~~~~~~~~~~~~~~l~~lL~~ld------~~--~~~~~v~VI~aTn~~~-------------~ld~allRpgRfd~~ 296 (389)
T PRK03992 238 AKRTDSGTSGDREVQRTLMQLLAEMD------GF--DPRGNVKIIAATNRID-------------ILDPAILRPGRFDRI 296 (389)
T ss_pred cccccCCCCccHHHHHHHHHHHHhcc------cc--CCCCCEEEEEecCChh-------------hCCHHHcCCccCceE
Confidence 2445556666654311 00 0123678999999641 37788886 99988
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
+.++.+..++ +..|+..+..... +.+.+. ...|...
T Consensus 297 I~v~~P~~~~-----R~~Il~~~~~~~~------------------------~~~~~~---~~~la~~------------ 332 (389)
T PRK03992 297 IEVPLPDEEG-----RLEILKIHTRKMN------------------------LADDVD---LEELAEL------------ 332 (389)
T ss_pred EEECCCCHHH-----HHHHHHHHhccCC------------------------CCCcCC---HHHHHHH------------
Confidence 8776655332 3333443322111 111111 1112211
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhh
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVS 641 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 641 (726)
.-..+.+++.++++.|...|--+.+..|+.+|+.+|+..+..+
T Consensus 333 -------t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 333 -------TEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred -------cCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcc
Confidence 2347889999999999888877778899999999999877654
No 76
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.35 E-value=1.6e-11 Score=147.41 Aligned_cols=243 Identities=16% Similarity=0.146 Sum_probs=145.4
Q ss_pred HHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc---E-EeCCC
Q 004862 325 YKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA---V-YTSGK 400 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~---~-~~~g~ 400 (726)
+..+...+...|+|++.+.+++.-++..... .+. ...|...++||+||||||||.+|++++..+..+ + .....
T Consensus 556 l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~-gl~--~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s 632 (852)
T TIGR03346 556 LLHMEEVLHERVVGQDEAVEAVSDAIRRSRA-GLS--DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMS 632 (852)
T ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhc-cCC--CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 4456677888899999988888776653200 000 011233579999999999999999999876432 1 11110
Q ss_pred CCCcccccce-eeecCCCchhhh-ccCce----eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 401 GSSAAGLTAS-VIRDGSSREFYL-EGGAM----VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 401 ~~~~~gl~~~-~~~~~~~~~~~~-~~G~l----~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
.... ....+ ....+ .+-..+ +.|.+ ......|++||||++++++.+..|+++|++|.++.. .|....+ .+
T Consensus 633 ~~~~-~~~~~~l~g~~-~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~-rn 708 (852)
T TIGR03346 633 EYME-KHSVARLIGAP-PGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDF-RN 708 (852)
T ss_pred hhcc-cchHHHhcCCC-CCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecC-CCeEEec-CC
Confidence 0000 00000 00000 011111 12222 223456999999999999999999999999998743 3444443 35
Q ss_pred eEEEEecCCCCCcCCC------ccch------hhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccc
Q 004862 475 TSVLAAANPPSGRYDD------LKSA------QDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSA 542 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~------~~~~------~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~ 542 (726)
+.||+|||-....+.. .... .....|++.|+.|+|-++.+.+...++ -..|....+..
T Consensus 709 ~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~-l~~I~~l~L~~--------- 778 (852)
T TIGR03346 709 TVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQ-IARIVEIQLGR--------- 778 (852)
T ss_pred cEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHH-HHHHHHHHHHH---------
Confidence 7899999962221111 0011 124458899999999888777665332 23343333321
Q ss_pred cccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCc--cCChhHHHHHHHHHH
Q 004862 543 DSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPI--PITVRQLEAIVRLSE 615 (726)
Q Consensus 543 ~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~--~~t~R~L~~lirla~ 615 (726)
+.+.+ ....+.+.+++++.+.|.++ .| +++.|.|+++++...
T Consensus 779 ----------l~~~l--~~~~~~l~i~~~a~~~L~~~-------------------~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 779 ----------LRKRL--AERKITLELSDAALDFLAEA-------------------GYDPVYGARPLKRAIQREI 822 (852)
T ss_pred ----------HHHHH--HHCCCeecCCHHHHHHHHHh-------------------CCCCCCCchhHHHHHHHHH
Confidence 22221 12235567999999999886 35 799999999997543
No 77
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.34 E-value=2.2e-11 Score=134.93 Aligned_cols=202 Identities=16% Similarity=0.220 Sum_probs=121.4
Q ss_pred CccCchhHHH---HHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccccee
Q 004862 335 SIFGHDDVKK---AVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASV 411 (726)
Q Consensus 335 ~I~G~~~~k~---aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~ 411 (726)
+++|++.+.. .+.-++.++. -.|+||+||||||||++|+.+++.....+........ +. ..
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~------------~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--~~--~~ 76 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGR------------LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--GV--KD 76 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCC------------CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--cH--HH
Confidence 5778887732 2444443331 1589999999999999999999877655432110000 00 00
Q ss_pred eecCCCchhhhcc-CceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCC
Q 004862 412 IRDGSSREFYLEG-GAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDD 490 (726)
Q Consensus 412 ~~~~~~~~~~~~~-G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~ 490 (726)
++ ...-.. .......+.++||||++.++...|+.|+..||++. +.+|++++..
T Consensus 77 ir-----~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~---------------iilI~att~n------ 130 (413)
T PRK13342 77 LR-----EVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT---------------ITLIGATTEN------ 130 (413)
T ss_pred HH-----HHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc---------------EEEEEeCCCC------
Confidence 00 000000 00112256799999999999999999999998765 2355554321
Q ss_pred ccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCH
Q 004862 491 LKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSE 570 (726)
Q Consensus 491 ~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ 570 (726)
....+.++|++|+ .++.+.+.+.++. ..+..+++.. ....+ ..+++
T Consensus 131 -----~~~~l~~aL~SR~-~~~~~~~ls~e~i-~~lL~~~l~~--------------------------~~~~~-i~i~~ 176 (413)
T PRK13342 131 -----PSFEVNPALLSRA-QVFELKPLSEEDI-EQLLKRALED--------------------------KERGL-VELDD 176 (413)
T ss_pred -----hhhhccHHHhccc-eeeEeCCCCHHHH-HHHHHHHHHH--------------------------hhcCC-CCCCH
Confidence 1123778999999 4555655542221 1111111110 00001 25788
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 571 SASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 571 ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
++.+.|.++ .++++|++.+++..+... ...|+.+++.+++..
T Consensus 177 ~al~~l~~~--------------------s~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 177 EALDALARL--------------------ANGDARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred HHHHHHHHh--------------------CCCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 888888775 358899999998776543 567999999988764
No 78
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.33 E-value=2.3e-10 Score=125.26 Aligned_cols=300 Identities=15% Similarity=0.127 Sum_probs=163.8
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCC----------CcEEeCCCC-C
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAP----------IAVYTSGKG-S 402 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~----------~~~~~~g~~-~ 402 (726)
+.+.|++...+.|.-.|..... | ....+++|+||||||||++++++.+.+. ..+|..... .
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-----~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-----G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-----C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 3488998887777666643110 0 1125799999999999999999876432 123332211 1
Q ss_pred Ccccc----cceee--ec--CCCc----h-hhhccCcee-ecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceE
Q 004862 403 SAAGL----TASVI--RD--GSSR----E-FYLEGGAMV-LADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGIT 468 (726)
Q Consensus 403 ~~~gl----~~~~~--~~--~~~~----~-~~~~~G~l~-la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~ 468 (726)
+...+ ...+. .. +..+ + +..--..+. .....+++|||+|.+....+..|.+.+.-...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~-------- 158 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN-------- 158 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccc--------
Confidence 11101 00110 00 0000 0 000000011 11234899999999953333444444321100
Q ss_pred EEe-eCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeEeccCCChhhhHHHHHHHHHHhhhcccccccccc
Q 004862 469 TVL-NSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKV 546 (726)
Q Consensus 469 ~~l-~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 546 (726)
... +.++.+|+++|.+. . ...+.+++.+||. ..+.+++...
T Consensus 159 ~~~~~~~v~lI~i~n~~~--------~--~~~l~~~~~s~~~~~~i~f~p~~~--------------------------- 201 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLK--------F--RENLDPRVKSSLCEEEIIFPPYDA--------------------------- 201 (365)
T ss_pred cCCCCCeEEEEEEECCcc--------h--HhhcCHHHhccCCcceeeeCCCCH---------------------------
Confidence 011 24688999998531 1 1236677888885 3344443332
Q ss_pred cCCHHHHHHHHHHhHc-cC-CCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCC
Q 004862 547 SKEENWLKRYIQYCRL-EC-HPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSH 624 (726)
Q Consensus 547 ~~~~~~L~~yi~~a~~-~~-~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~ 624 (726)
+.+..++...-. .. ...+++++.+.+..... ...+.+|.+..+++.|...|..+.+.
T Consensus 202 ----~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~-----------------~~~Gd~R~al~~l~~a~~~a~~~~~~ 260 (365)
T TIGR02928 202 ----EELRDILENRAEKAFYDGVLDDGVIPLCAALAA-----------------QEHGDARKAIDLLRVAGEIAEREGAE 260 (365)
T ss_pred ----HHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 122222211100 01 12477787777765421 12378999999999998888888888
Q ss_pred cccHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH----HcC---CCH
Q 004862 625 VATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLT----RMG---MNE 697 (726)
Q Consensus 625 ~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g---~~~ 697 (726)
.|+.+|+..|+.....+.....- .+++..+...+..+....+. ....+...++++... ..| ++.
T Consensus 261 ~it~~~v~~a~~~~~~~~~~~~i------~~l~~~~~~~l~ai~~~~~~---~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 331 (365)
T TIGR02928 261 RVTEDHVEKAQEKIEKDRLLELI------RGLPTHSKLVLLAIANLAAN---DEDPFRTGEVYEVYKEVCEDIGVDPLTQ 331 (365)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHHhc---CCCCccHHHHHHHHHHHHHhcCCCCCcH
Confidence 99999999999877544322111 12333333333323222221 233566677776443 234 788
Q ss_pred HHHHHHHHHHHHCCeEEEe
Q 004862 698 SIIRRALIIMHQRDEVEYK 716 (726)
Q Consensus 698 ~~~~~~l~~l~~~g~i~~~ 716 (726)
.++.+.+++|...|+|...
T Consensus 332 ~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 332 RRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999965
No 79
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=4.7e-11 Score=119.09 Aligned_cols=232 Identities=19% Similarity=0.238 Sum_probs=148.1
Q ss_pred cCcceEEEECCCchhHHHHHHHH-------HHhCCCcEEe-CCC--CCCc-ccccceeeecCCCchhhhccCceeecCCC
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFV-------EKTAPIAVYT-SGK--GSSA-AGLTASVIRDGSSREFYLEGGAMVLADGG 433 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i-------~~~~~~~~~~-~g~--~~~~-~gl~~~~~~~~~~~~~~~~~G~l~la~~g 433 (726)
|+..++||.||+|.|||.||+.| |+++.+-+-+ +.+ +.++ ..|++ -++...+|.....+|.+..||||
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg-hvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG-HVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh-hhccccccchhhhhhhhccCCCc
Confidence 55689999999999999999988 3344433322 110 1110 01111 12222455555677888899999
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCe-ee
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL-IF 512 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl-i~ 512 (726)
.+|+|||.++..+.|..|+.++|+..+ ..-|......+++.+||.|-. +.........+.+.|+.|.+| .|
T Consensus 285 mlfldeigelgadeqamllkaieekrf--~pfgsdr~v~sdfqliagtvr------dlrq~vaeg~fredl~arinlwtf 356 (531)
T COG4650 285 MLFLDEIGELGADEQAMLLKAIEEKRF--YPFGSDRQVSSDFQLIAGTVR------DLRQLVAEGKFREDLYARINLWTF 356 (531)
T ss_pred eEehHhhhhcCccHHHHHHHHHHhhcc--CCCCCccccccchHHhhhhHH------HHHHHHhccchHHHHHHhhheeee
Confidence 999999999999999999999999885 356666777889999998863 222334455678889999886 45
Q ss_pred EeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 513 IVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 513 ~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
.+|-...+.+| ..+.++.+ |.++...... ...+..||......+.
T Consensus 357 ~lpgl~qr~ed--------------------iepnldye-lerha~~~g~--~vrfntearra~l~fa------------ 401 (531)
T COG4650 357 TLPGLRQRQED--------------------IEPNLDYE-LERHASLTGD--SVRFNTEARRAWLAFA------------ 401 (531)
T ss_pred eccccccCccc--------------------cCCCccHH-HHHHHHhhCc--eeeeehHHHHHHHHhc------------
Confidence 55443322211 12333332 3333222221 1246666666555542
Q ss_pred ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhh
Q 004862 593 ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMD 644 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~ 644 (726)
......|.+|.|+|..-+.....+|. +..|+.+-|++-|.-+..+..+
T Consensus 402 -~spqa~w~gnfrelsasvtrmatlad---~grit~~~ve~ei~rlr~~w~~ 449 (531)
T COG4650 402 -TSPQATWRGNFRELSASVTRMATLAD---SGRITLDVVEDEINRLRYNWQE 449 (531)
T ss_pred -cCcchhhcccHHHHhHHHHHHHHHhc---CCceeHHHHHHHHHHHHHHhhh
Confidence 11234799999999887755445554 7889999998887666655543
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=99.33 E-value=8.4e-11 Score=125.99 Aligned_cols=200 Identities=17% Similarity=0.136 Sum_probs=117.8
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD 414 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~ 414 (726)
+++|++.+...|--.+.++ .-.|+||+||||||||++|+++++.+....+. .....++++-.+.
T Consensus 14 ~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~----~~~~eln~sd~~~ 77 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYK----EAVLELNASDDRG 77 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCc----cceeeeccccccc
Confidence 4679998888765444433 11589999999999999999998875221110 0111122211110
Q ss_pred CC-----CchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCC
Q 004862 415 GS-----SREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYD 489 (726)
Q Consensus 415 ~~-----~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~ 489 (726)
.. ...+......+......+++|||+|.|....|.+|+..||.- +..++++.++|..
T Consensus 78 ~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~----- 139 (319)
T PLN03025 78 IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTS----- 139 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCc-----
Confidence 00 000000000011123469999999999999999999999841 2235577778742
Q ss_pred CccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHH-hHccCCCCC
Q 004862 490 DLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQY-CRLECHPRL 568 (726)
Q Consensus 490 ~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~-a~~~~~p~l 568 (726)
..+.++|.+|+. ++.+...+ .+.+.+++.. +++ -...+
T Consensus 140 --------~~i~~~L~SRc~-~i~f~~l~-------------------------------~~~l~~~L~~i~~~-egi~i 178 (319)
T PLN03025 140 --------SKIIEPIQSRCA-IVRFSRLS-------------------------------DQEILGRLMKVVEA-EKVPY 178 (319)
T ss_pred --------cccchhHHHhhh-cccCCCCC-------------------------------HHHHHHHHHHHHHH-cCCCC
Confidence 125688999984 44444443 2222223222 221 23358
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 569 SESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 569 s~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
++++.+.|... ..++.|.+.+.++.+. . ....|+.+++...
T Consensus 179 ~~~~l~~i~~~--------------------~~gDlR~aln~Lq~~~----~-~~~~i~~~~v~~~ 219 (319)
T PLN03025 179 VPEGLEAIIFT--------------------ADGDMRQALNNLQATH----S-GFGFVNQENVFKV 219 (319)
T ss_pred CHHHHHHHHHH--------------------cCCCHHHHHHHHHHHH----h-cCCCCCHHHHHHH
Confidence 88998888775 3478899988887332 1 2457888888753
No 81
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.32 E-value=6.7e-12 Score=123.35 Aligned_cols=220 Identities=20% Similarity=0.246 Sum_probs=122.5
Q ss_pred hhcCCccCchhHHHHHHHHH--hCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccc
Q 004862 331 KIAPSIFGHDDVKKAVSCLL--FGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLT 408 (726)
Q Consensus 331 si~p~I~G~~~~k~aill~L--~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~ 408 (726)
....+++||+.+|+..-+.+ .-... . .|. =..-|||++||||||||++|++++..+...++.. .+..|.
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe-~--Fg~--WAPknVLFyGppGTGKTm~Akalane~kvp~l~v----kat~li 188 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPE-R--FGD--WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLV----KATELI 188 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChH-H--hcc--cCcceeEEECCCCccHHHHHHHHhcccCCceEEe----chHHHH
Confidence 35667999999998643332 11110 0 111 1225899999999999999999998877665521 111121
Q ss_pred ceeeecCCC--chhhhccCceeecCCCeEEecccCcCCHHH------------HHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 409 ASVIRDGSS--REFYLEGGAMVLADGGVVCIDEFDKMRPED------------RVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 409 ~~~~~~~~~--~~~~~~~G~l~la~~gvl~iDEi~~~~~~~------------~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
+..+.|... .+..-.+ ..+...|+||||+|.+..+. -++|+.-|+. . . -+-.
T Consensus 189 GehVGdgar~Ihely~rA---~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg-i--------~--eneG 254 (368)
T COG1223 189 GEHVGDGARRIHELYERA---RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG-I--------K--ENEG 254 (368)
T ss_pred HHHhhhHHHHHHHHHHHH---HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC-c--------c--cCCc
Confidence 111111000 0000011 12345699999999975442 3556655542 1 1 1334
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
+..|||||.+. .|.+++.|||.--+.+.-+.+++ +.+++.
T Consensus 255 VvtIaaTN~p~-------------~LD~aiRsRFEeEIEF~LP~~eE-----r~~ile---------------------- 294 (368)
T COG1223 255 VVTIAATNRPE-------------LLDPAIRSRFEEEIEFKLPNDEE-----RLEILE---------------------- 294 (368)
T ss_pred eEEEeecCChh-------------hcCHHHHhhhhheeeeeCCChHH-----HHHHHH----------------------
Confidence 66789999542 27889999998444333333333 222222
Q ss_pred HHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhH-HHHHHHHHHHHHhhhCCCcccHHHHHH
Q 004862 555 RYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQ-LEAIVRLSEALAKMKLSHVATENEVNE 633 (726)
Q Consensus 555 ~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~-L~~lirla~a~A~l~~~~~V~~~Dv~~ 633 (726)
.| ++...- .+... .+.+... .-..|-|. -+.+++.|.-.|-...++.|+.+|++.
T Consensus 295 ~y---~k~~Pl-pv~~~-~~~~~~~-------------------t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~ 350 (368)
T COG1223 295 YY---AKKFPL-PVDAD-LRYLAAK-------------------TKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEK 350 (368)
T ss_pred HH---HHhCCC-ccccC-HHHHHHH-------------------hCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHH
Confidence 22 222111 11211 1122211 12245565 467888888888889999999999999
Q ss_pred HHHH
Q 004862 634 AVRL 637 (726)
Q Consensus 634 ai~l 637 (726)
|+.-
T Consensus 351 al~k 354 (368)
T COG1223 351 ALKK 354 (368)
T ss_pred HHHh
Confidence 8864
No 82
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.9e-10 Score=125.32 Aligned_cols=211 Identities=21% Similarity=0.187 Sum_probs=125.5
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE-Ee---CCCCCCc----c
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV-YT---SGKGSSA----A 405 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~-~~---~g~~~~~----~ 405 (726)
-+|+||+.+++.+.-++..+. -.+.+||+||||+|||++|+.+++.+.-.. +. +|.-.+. .
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEK 84 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 368899999999888777651 113469999999999999999988764211 00 1000000 0
Q ss_pred cccceee-ecCCC----chhh--hcc-Cc-eeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 406 GLTASVI-RDGSS----REFY--LEG-GA-MVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 406 gl~~~~~-~~~~~----~~~~--~~~-G~-l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
+....+. -++.+ .... .+. .. -..++..+++|||++.|+...+++|+..||+- +..+.
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-------------~~~~~ 151 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PQHIK 151 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeE
Confidence 0000000 00000 0000 000 00 01234469999999999999999999999862 22345
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHH
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRY 556 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~y 556 (726)
+|.+||-+ ..+.+++.+|+ ..+.+.+.. .+.+..|
T Consensus 152 fIl~t~~~-------------~~l~~tI~SRc-~~~~~~~l~-------------------------------~~el~~~ 186 (363)
T PRK14961 152 FILATTDV-------------EKIPKTILSRC-LQFKLKIIS-------------------------------EEKIFNF 186 (363)
T ss_pred EEEEcCCh-------------HhhhHHHHhhc-eEEeCCCCC-------------------------------HHHHHHH
Confidence 55555421 12778999998 455554433 3333334
Q ss_pred HHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 557 IQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 557 i~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
+...-+.-...+++++.+.|..+ ..+++|.+.+++..+.+. +...|+.++|.+++.
T Consensus 187 L~~~~~~~g~~i~~~al~~ia~~--------------------s~G~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 187 LKYILIKESIDTDEYALKLIAYH--------------------AHGSMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 33311112335889999888876 347899988888765543 367899999988775
Q ss_pred H
Q 004862 637 L 637 (726)
Q Consensus 637 l 637 (726)
.
T Consensus 243 ~ 243 (363)
T PRK14961 243 L 243 (363)
T ss_pred C
Confidence 3
No 83
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.4e-11 Score=127.55 Aligned_cols=148 Identities=22% Similarity=0.227 Sum_probs=86.3
Q ss_pred cCCccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccccee
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASV 411 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~ 411 (726)
..+|.|..++|+-|--+.+-... .+...| ..|..-.||++||||||||+||++++......+|.. +...|+.
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV----SsstltS-- 283 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV----SSSTLTS-- 283 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe----chhhhhh--
Confidence 34678988776655333321100 000011 124456799999999999999999998887666632 2222222
Q ss_pred eecCCCchhhhccCce-----ee---cCCCeEEecccCcCCH------------HHHHHHHHHHhcceEeeeccceEEEe
Q 004862 412 IRDGSSREFYLEGGAM-----VL---ADGGVVCIDEFDKMRP------------EDRVAIHEAMEQQTISIAKAGITTVL 471 (726)
Q Consensus 412 ~~~~~~~~~~~~~G~l-----~l---a~~gvl~iDEi~~~~~------------~~~~~L~~~me~~~i~i~~~g~~~~l 471 (726)
.|.-+...+ .+ ....++||||||.+.. ...+-|+.-|+--. .....
T Consensus 284 -------KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~-------~t~e~ 349 (491)
T KOG0738|consen 284 -------KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ-------GTLEN 349 (491)
T ss_pred -------hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc-------ccccc
Confidence 222111111 12 2346999999998742 23455666665211 11111
Q ss_pred eCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEe
Q 004862 472 NSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIV 514 (726)
Q Consensus 472 ~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l 514 (726)
...+.|+||||-|+ + +.++|++||.=.+.+
T Consensus 350 ~k~VmVLAATN~PW---d----------iDEAlrRRlEKRIyI 379 (491)
T KOG0738|consen 350 SKVVMVLAATNFPW---D----------IDEALRRRLEKRIYI 379 (491)
T ss_pred ceeEEEEeccCCCc---c----------hHHHHHHHHhhheee
Confidence 33588999999774 3 889999999944433
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.32 E-value=9.7e-11 Score=136.39 Aligned_cols=211 Identities=14% Similarity=0.160 Sum_probs=122.5
Q ss_pred CccCchhHHH--HHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 335 SIFGHDDVKK--AVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 335 ~I~G~~~~k~--aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
+++|++.+.. ..+..++.. ..-.|+||+||||||||++|+++++.....+.. +.+...
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~-----------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~---------lna~~~ 88 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKA-----------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSS---------LNAVLA 88 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhc-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccee---------ehhhhh
Confidence 6789988753 333333332 111589999999999999999999876433221 111100
Q ss_pred ecCCCchhhhcc-Cce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCC
Q 004862 413 RDGSSREFYLEG-GAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDD 490 (726)
Q Consensus 413 ~~~~~~~~~~~~-G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~ 490 (726)
.-.......-.. ..+ ....++++||||++.++...|+.|+..||++. +.+|+++++.
T Consensus 89 ~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~---------------IiLI~aTTen------ 147 (725)
T PRK13341 89 GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT---------------ITLIGATTEN------ 147 (725)
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce---------------EEEEEecCCC------
Confidence 000000000000 001 11245699999999999999999999998765 3456655431
Q ss_pred ccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCH
Q 004862 491 LKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSE 570 (726)
Q Consensus 491 ~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ 570 (726)
....+.++|+||.. ++.+++...++ -..+.++++...... +.. -...+++
T Consensus 148 -----p~~~l~~aL~SR~~-v~~l~pLs~ed-i~~IL~~~l~~~~~~---------------------~g~--~~v~I~d 197 (725)
T PRK13341 148 -----PYFEVNKALVSRSR-LFRLKSLSDED-LHQLLKRALQDKERG---------------------YGD--RKVDLEP 197 (725)
T ss_pred -----hHhhhhhHhhcccc-ceecCCCCHHH-HHHHHHHHHHHHHhh---------------------cCC--cccCCCH
Confidence 11236789999975 45555555322 122222222210000 001 1346899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCC--cccHHHHHHHHH
Q 004862 571 SASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSH--VATENEVNEAVR 636 (726)
Q Consensus 571 ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~--~V~~~Dv~~ai~ 636 (726)
++.+.|.++ .++++|++.++++.+...+...... .|+.+++.+++.
T Consensus 198 eaL~~La~~--------------------s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 198 EAEKHLVDV--------------------ANGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred HHHHHHHHh--------------------CCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH
Confidence 999999886 3689999999999876544322222 367777777663
No 85
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.1e-10 Score=135.02 Aligned_cols=207 Identities=17% Similarity=0.163 Sum_probs=126.6
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcce-EEEECCCchhHHHHHHHHHHhCCCcEEe----CCCCCCc---
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVN-VLLLGDPSTAKSQFLKFVEKTAPIAVYT----SGKGSSA--- 404 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~-vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g~~~~~--- 404 (726)
+-+|+||+.+++.|.-++..+.- .| +||+||||||||++||.+++.+.-.... +|.-.+.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl------------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRL------------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC------------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 34688999999998877766511 45 4899999999999999999876532111 1100000
Q ss_pred -ccccceee-ecCC--Cc--h-------hhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEe
Q 004862 405 -AGLTASVI-RDGS--SR--E-------FYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVL 471 (726)
Q Consensus 405 -~gl~~~~~-~~~~--~~--~-------~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l 471 (726)
.+....+. -+.. .+ . ..+.+ ..+...|++|||+++|+.+.+++|+..||+-
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P---~~gk~KViIIDEAh~LT~eAqNALLKtLEEP------------- 146 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP---SRGRFKVYLIDEVHMLSRSSFNALLKTLEEP------------- 146 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhh---hcCCcEEEEEechHhcCHHHHHHHHHHHhcc-------------
Confidence 00000000 0100 00 0 00111 1133459999999999999999999999962
Q ss_pred eCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHH
Q 004862 472 NSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEEN 551 (726)
Q Consensus 472 ~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 551 (726)
+..+++|.+||.+ ..+.++++||+ .+|.+.. ++.+
T Consensus 147 P~~vrFILaTTe~-------------~kLl~TIlSRC-q~f~fkp-------------------------------Ls~e 181 (944)
T PRK14949 147 PEHVKFLLATTDP-------------QKLPVTVLSRC-LQFNLKS-------------------------------LTQD 181 (944)
T ss_pred CCCeEEEEECCCc-------------hhchHHHHHhh-eEEeCCC-------------------------------CCHH
Confidence 2345555555521 12678999998 4555543 4444
Q ss_pred HHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHH
Q 004862 552 WLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEV 631 (726)
Q Consensus 552 ~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv 631 (726)
.+++|+.+.-..-...+++++.+.|..+ ..+++|...+++..+.+. ....++.++|
T Consensus 182 EI~~~L~~il~~EgI~~edeAL~lIA~~--------------------S~Gd~R~ALnLLdQala~----~~~~It~~~V 237 (944)
T PRK14949 182 EIGTQLNHILTQEQLPFEAEALTLLAKA--------------------ANGSMRDALSLTDQAIAF----GGGQVMLTQV 237 (944)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh----cCCcccHHHH
Confidence 4555554432222346889999999876 358899999998765543 2356777777
Q ss_pred HHHHH
Q 004862 632 NEAVR 636 (726)
Q Consensus 632 ~~ai~ 636 (726)
.+.+.
T Consensus 238 ~~llG 242 (944)
T PRK14949 238 QTMLG 242 (944)
T ss_pred HHHhC
Confidence 65543
No 86
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.2e-10 Score=132.33 Aligned_cols=212 Identities=20% Similarity=0.194 Sum_probs=127.9
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe----CCC---------
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT----SGK--------- 400 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g~--------- 400 (726)
.+|+||+.+++.|.-++-++. -.+-+||+|++|||||++++.+++.+.-.... +|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 357899999999988887661 12345999999999999999998866421110 110
Q ss_pred --CCCcccccceeeecCCCchh--hhcc--CceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 401 --GSSAAGLTASVIRDGSSREF--YLEG--GAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 401 --~~~~~gl~~~~~~~~~~~~~--~~~~--G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
......+.++..+. ..+. .++. -.-......|++|||+++|+...++.|+..||+- +..
T Consensus 85 G~h~DviEIDAas~rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~ 149 (830)
T PRK07003 85 GRFVDYVEMDAASNRG--VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPH 149 (830)
T ss_pred CCCceEEEeccccccc--HHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-------------CCC
Confidence 00000011100000 0000 0000 0001234469999999999999999999999963 234
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
+.+|.+||.+ ..+.++++||+ ..|.+.... .+.+.
T Consensus 150 v~FILaTtd~-------------~KIp~TIrSRC-q~f~Fk~Ls-------------------------------~eeIv 184 (830)
T PRK07003 150 VKFILATTDP-------------QKIPVTVLSRC-LQFNLKQMP-------------------------------AGHIV 184 (830)
T ss_pred eEEEEEECCh-------------hhccchhhhhe-EEEecCCcC-------------------------------HHHHH
Confidence 6677777622 23788999999 555554443 22222
Q ss_pred HHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 555 RYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 555 ~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
.++...-..-...+++++.+.|.+. ..+++|...+++..+.++. ...|+.++|...
T Consensus 185 ~~L~~Il~~EgI~id~eAL~lIA~~--------------------A~GsmRdALsLLdQAia~~----~~~It~~~V~~~ 240 (830)
T PRK07003 185 SHLERILGEERIAFEPQALRLLARA--------------------AQGSMRDALSLTDQAIAYS----ANEVTETAVSGM 240 (830)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhc----cCCcCHHHHHHH
Confidence 2222211112235788999888876 3478999999987666543 356898888877
Q ss_pred HHHHhh
Q 004862 635 VRLFTV 640 (726)
Q Consensus 635 i~l~~~ 640 (726)
+.+...
T Consensus 241 LG~~d~ 246 (830)
T PRK07003 241 LGALDQ 246 (830)
T ss_pred hCCCCH
Confidence 655443
No 87
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.31 E-value=2.3e-11 Score=143.99 Aligned_cols=240 Identities=14% Similarity=0.170 Sum_probs=143.8
Q ss_pred hHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCC
Q 004862 324 AYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGS 402 (726)
Q Consensus 324 ~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~ 402 (726)
.+..+...+-..|+||+.+++.+.-++..... ... ...|...++||+||||||||.+|+++++.+...+.. .+...
T Consensus 444 ~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~-g~~--~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 444 KLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRA-GLG--NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred HHHHHHHHHhcceeCcHHHHHHHHHHHHHHhc-CCC--CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 44567888899999999999988777653200 000 011222468999999999999999999988654332 11000
Q ss_pred ----CcccccceeeecCCCchhhhc-cC----ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 403 ----SAAGLTASVIRDGSSREFYLE-GG----AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 403 ----~~~gl~~~~~~~~~~~~~~~~-~G----~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
+...+.++ + .+...++ .| ++.....+|++||||+++.++.++.|+++|++|.++-. .|....+ .
T Consensus 521 ~~~~~~~~lig~----~-~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~-~ 593 (731)
T TIGR02639 521 MEKHTVSRLIGA----P-PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN-NGRKADF-R 593 (731)
T ss_pred hhcccHHHHhcC----C-CCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecC-CCcccCC-C
Confidence 00001111 0 0101111 11 22234568999999999999999999999999997643 3333333 3
Q ss_pred ceEEEEecCCCCCc-------CCCcc-----chhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhccccc
Q 004862 474 RTSVLAAANPPSGR-------YDDLK-----SAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVS 541 (726)
Q Consensus 474 ~~~iiaa~Np~~g~-------~~~~~-----~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~ 541 (726)
++.+|+|+|..... |.... ...-...|+|.|++|||-++.+.+...++ -..|+++.+...
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~-l~~Iv~~~L~~l------- 665 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEV-LEKIVQKFVDEL------- 665 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHH-HHHHHHHHHHHH-------
Confidence 67899999973211 11000 00112348899999999888887776433 344444444321
Q ss_pred ccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHH
Q 004862 542 ADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVR 612 (726)
Q Consensus 542 ~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lir 612 (726)
.+.+ ....+.-.+++++.+.|...- ..-....|.|+++|+
T Consensus 666 ------------~~~l--~~~~~~l~i~~~a~~~La~~~-----------------~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 666 ------------SKQL--NEKNIKLELTDDAKKYLAEKG-----------------YDEEFGARPLARVIQ 705 (731)
T ss_pred ------------HHHH--HhCCCeEEeCHHHHHHHHHhC-----------------CCcccCchHHHHHHH
Confidence 1111 112234468999999888741 022357888888886
No 88
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.31 E-value=2.3e-11 Score=135.72 Aligned_cols=219 Identities=22% Similarity=0.216 Sum_probs=124.7
Q ss_pred CCccCchhHHHHHHHH--HhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccccee
Q 004862 334 PSIFGHDDVKKAVSCL--LFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASV 411 (726)
Q Consensus 334 p~I~G~~~~k~aill~--L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~ 411 (726)
.+|.|++.+|+-+.-. .+.... ...| .+..-.+||+||||||||++|++++..+...++....+ .+....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~--~~~g--l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~----~l~~~~ 299 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQA--SNYG--LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVG----KLFGGI 299 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHH--HhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhH----Hhcccc
Confidence 4688999998866532 111000 0011 12234699999999999999999999887665532111 111111
Q ss_pred eecCCC--chhhhccCceeecCCCeEEecccCcCCHH------------HHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 412 IRDGSS--REFYLEGGAMVLADGGVVCIDEFDKMRPE------------DRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 412 ~~~~~~--~~~~~~~G~l~la~~gvl~iDEi~~~~~~------------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
+.+... ......+ ......|+||||||++... ....++.+|++. ..++.|
T Consensus 300 vGese~~l~~~f~~A---~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~v 363 (489)
T CHL00195 300 VGESESRMRQMIRIA---EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-------------KSPVFV 363 (489)
T ss_pred cChHHHHHHHHHHHH---HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-------------CCceEE
Confidence 110000 0000000 1124579999999986431 123455666532 235789
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
|||||.+. .+++++++ |||.++.++.+..++ +..|+..|....
T Consensus 364 IaTTN~~~-------------~Ld~allR~GRFD~~i~v~lP~~~e-----R~~Il~~~l~~~----------------- 408 (489)
T CHL00195 364 VATANNID-------------LLPLEILRKGRFDEIFFLDLPSLEE-----REKIFKIHLQKF----------------- 408 (489)
T ss_pred EEecCChh-------------hCCHHHhCCCcCCeEEEeCCcCHHH-----HHHHHHHHHhhc-----------------
Confidence 99999542 37888887 999888776554333 333333332211
Q ss_pred HHHHhHccCCCC-CCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 556 YIQYCRLECHPR-LSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 556 yi~~a~~~~~p~-ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
.|. .++.-.+.|... .-.+|.++++++++-|...|-... ..++.+|+..|
T Consensus 409 ---------~~~~~~~~dl~~La~~-------------------T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a 459 (489)
T CHL00195 409 ---------RPKSWKKYDIKKLSKL-------------------SNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLA 459 (489)
T ss_pred ---------CCCcccccCHHHHHhh-------------------cCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHH
Confidence 111 111112222221 235788999999998887776554 56899999999
Q ss_pred HHHHhh
Q 004862 635 VRLFTV 640 (726)
Q Consensus 635 i~l~~~ 640 (726)
+.-+..
T Consensus 460 ~~~~~P 465 (489)
T CHL00195 460 LKQFIP 465 (489)
T ss_pred HHhcCC
Confidence 976543
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.30 E-value=3.1e-11 Score=122.81 Aligned_cols=182 Identities=15% Similarity=0.174 Sum_probs=111.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.+++|+||||||||++|+++++.+..... +..-+.+....+. ...+. . .+...++++|||++.++...
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~------~~~~i~~~~~~~~-~~~~~--~---~~~~~~lLvIDdi~~l~~~~ 106 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGK------SAIYLPLAELAQA-DPEVL--E---GLEQADLVCLDDVEAIAGQP 106 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCC------cEEEEeHHHHHHh-HHHHH--h---hcccCCEEEEeChhhhcCCh
Confidence 68999999999999999999876532100 1100111111000 00000 0 01234699999999998754
Q ss_pred --HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCc-hhhhcccC--eeeEeccCCChhh
Q 004862 448 --RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQ-TTILSRFD--LIFIVKDIRMYNQ 522 (726)
Q Consensus 448 --~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~-~~Ll~RFd--li~~l~d~~~~~~ 522 (726)
+..|..+++... . .+..+|.++|... ....+. +.|.+||. ..+.++++.. +.
T Consensus 107 ~~~~~L~~~l~~~~----~--------~~~~iIits~~~~----------~~~~~~~~~L~~r~~~~~~i~l~~l~~-~e 163 (226)
T TIGR03420 107 EWQEALFHLYNRVR----E--------AGGRLLIAGRAAP----------AQLPLRLPDLRTRLAWGLVFQLPPLSD-EE 163 (226)
T ss_pred HHHHHHHHHHHHHH----H--------cCCeEEEECCCCh----------HHCCcccHHHHHHHhcCeeEecCCCCH-HH
Confidence 788888876421 1 1135677777421 112233 67888985 6676766654 22
Q ss_pred hHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccC
Q 004862 523 DKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPI 602 (726)
Q Consensus 523 d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~ 602 (726)
+..+.+ .+. .+ ....+++++.+.|..+ |++
T Consensus 164 ~~~~l~--------------------------~~~---~~-~~~~~~~~~l~~L~~~--------------------~~g 193 (226)
T TIGR03420 164 KIAALQ--------------------------SRA---AR-RGLQLPDEVADYLLRH--------------------GSR 193 (226)
T ss_pred HHHHHH--------------------------HHH---HH-cCCCCCHHHHHHHHHh--------------------ccC
Confidence 222221 111 11 2345899999999874 899
Q ss_pred ChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 603 TVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 603 t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
|+|+|.++++.+.+.|.-.. ..|+.+.+.+++
T Consensus 194 n~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 194 DMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 99999999999887665554 469988888765
No 90
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=5e-10 Score=123.89 Aligned_cols=296 Identities=13% Similarity=0.112 Sum_probs=161.8
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC------cEEeCCCCC-Cccc
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI------AVYTSGKGS-SAAG 406 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~------~~~~~g~~~-~~~g 406 (726)
+.++|.+...+.+...+..+.. | ....+++|+|+||||||++++.+.+.+.. .+++..... +...
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~-----~---~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR-----G---SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-----C---CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 3466777766666666533311 0 11257999999999999999999765421 233322211 1000
Q ss_pred c----cceeee--cCCCc----hh-hhccCceee-cCCCeEEecccCcCC----HHHHHHHHHHHhcceEeeeccceEEE
Q 004862 407 L----TASVIR--DGSSR----EF-YLEGGAMVL-ADGGVVCIDEFDKMR----PEDRVAIHEAMEQQTISIAKAGITTV 470 (726)
Q Consensus 407 l----~~~~~~--~~~~~----~~-~~~~G~l~l-a~~gvl~iDEi~~~~----~~~~~~L~~~me~~~i~i~~~g~~~~ 470 (726)
+ ...+.. .+..+ +. ..-...+.. ...-+++|||+|.+. .+....|++++++..
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~----------- 170 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP----------- 170 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC-----------
Confidence 0 000000 00000 00 000000000 112389999999986 233334444443211
Q ss_pred eeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCC
Q 004862 471 LNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKE 549 (726)
Q Consensus 471 l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 549 (726)
..++.+|+++|+.. ..+ .+.+.+.+||. ..+.+++...++
T Consensus 171 -~~~v~vI~i~~~~~--------~~~--~l~~~~~s~~~~~~i~f~py~~~e---------------------------- 211 (394)
T PRK00411 171 -GARIGVIGISSDLT--------FLY--ILDPRVKSVFRPEEIYFPPYTADE---------------------------- 211 (394)
T ss_pred -CCeEEEEEEECCcc--------hhh--hcCHHHHhcCCcceeecCCCCHHH----------------------------
Confidence 12578999998631 111 15666777775 233444333221
Q ss_pred HHHHHHHHHH-hHccCC-CCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCccc
Q 004862 550 ENWLKRYIQY-CRLECH-PRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVAT 627 (726)
Q Consensus 550 ~~~L~~yi~~-a~~~~~-p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~ 627 (726)
+..++.. ++..+. -.+++++.+.+.+... ...+.+|.+..+++.|...|.-+.++.|+
T Consensus 212 ---~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~-----------------~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~ 271 (394)
T PRK00411 212 ---IFDILKDRVEEGFYPGVVDDEVLDLIADLTA-----------------REHGDARVAIDLLRRAGLIAEREGSRKVT 271 (394)
T ss_pred ---HHHHHHHHHHhhcccCCCCHhHHHHHHHHHH-----------------HhcCcHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 1111111 111111 1478888888887632 12467899999999988888888889999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH----HcCCCH---HHH
Q 004862 628 ENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLT----RMGMNE---SII 700 (726)
Q Consensus 628 ~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~---~~~ 700 (726)
.+|+..|+..+..+.....- ..++..+...+..+....+. ....++.+++++... ..|+++ .++
T Consensus 272 ~~~v~~a~~~~~~~~~~~~~------~~L~~~~k~~L~ai~~~~~~---~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~ 342 (394)
T PRK00411 272 EEDVRKAYEKSEIVHLSEVL------RTLPLHEKLLLRAIVRLLKK---GGDEVTTGEVYEEYKELCEELGYEPRTHTRF 342 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHHHcCCCcCcHHHH
Confidence 99999999876543321111 13344444333333222211 223567777776643 468754 999
Q ss_pred HHHHHHHHHCCeEEEe
Q 004862 701 RRALIIMHQRDEVEYK 716 (726)
Q Consensus 701 ~~~l~~l~~~g~i~~~ 716 (726)
...+.+|...|+|...
T Consensus 343 ~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 343 YEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHhcCCeEEE
Confidence 9999999999999854
No 91
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.2e-11 Score=134.35 Aligned_cols=224 Identities=19% Similarity=0.179 Sum_probs=125.7
Q ss_pred CCccCchhHHHHHHHHHhCCCcc-cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRK-NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~-~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
.+|-|++.+|+.+--+..-.... ..-.+.-+...-.|||+||||||||++|++++..+.-.+... ....|...++
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv----kgpEL~sk~v 509 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV----KGPELFSKYV 509 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec----cCHHHHHHhc
Confidence 35778999998775444221110 000001112223599999999999999999998877655421 1111222222
Q ss_pred ecCCCchhhhc---cCceeecCCCeEEecccCcCCHHH-----------HHHHHHHHhcceEeeeccceEEEeeCceEEE
Q 004862 413 RDGSSREFYLE---GGAMVLADGGVVCIDEFDKMRPED-----------RVAIHEAMEQQTISIAKAGITTVLNSRTSVL 478 (726)
Q Consensus 413 ~~~~~~~~~~~---~G~l~la~~gvl~iDEi~~~~~~~-----------~~~L~~~me~~~i~i~~~g~~~~l~~~~~ii 478 (726)
.+. +-.+. ..|-..+ ..|+|+||||.+..+. .+.|+.-|+-.. . ..++.||
T Consensus 510 GeS---Er~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~--~k~V~Vi 574 (693)
T KOG0730|consen 510 GES---ERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------A--LKNVLVI 574 (693)
T ss_pred Cch---HHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------c--cCcEEEE
Confidence 211 11000 0011122 3799999999875432 355555554222 1 2468999
Q ss_pred EecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHH
Q 004862 479 AAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRY 556 (726)
Q Consensus 479 aa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~y 556 (726)
||||.|. .+.++|++ |||-++.++.+. .+-+..|++.+....+
T Consensus 575 AATNRpd-------------~ID~ALlRPGRlD~iiyVplPD-----~~aR~~Ilk~~~kkmp----------------- 619 (693)
T KOG0730|consen 575 AATNRPD-------------MIDPALLRPGRLDRIIYVPLPD-----LEARLEILKQCAKKMP----------------- 619 (693)
T ss_pred eccCChh-------------hcCHHHcCCcccceeEeecCcc-----HHHHHHHHHHHHhcCC-----------------
Confidence 9999752 28899999 999777765443 3335555665543321
Q ss_pred HHHhHccCCCCCCHH-HHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhC--CCcccHHHHHH
Q 004862 557 IQYCRLECHPRLSES-ASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKL--SHVATENEVNE 633 (726)
Q Consensus 557 i~~a~~~~~p~ls~e-a~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~--~~~V~~~Dv~~ 633 (726)
++++ -.+.|... .-.+|-++|..+.+-|...|--+- -..|+.+|.++
T Consensus 620 -----------~~~~vdl~~La~~-------------------T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~ 669 (693)
T KOG0730|consen 620 -----------FSEDVDLEELAQA-------------------TEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEE 669 (693)
T ss_pred -----------CCccccHHHHHHH-------------------hccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 2222 11122221 123677888888888876663221 34677888888
Q ss_pred HHHHHhhh
Q 004862 634 AVRLFTVS 641 (726)
Q Consensus 634 ai~l~~~s 641 (726)
|+.-...|
T Consensus 670 al~~~r~s 677 (693)
T KOG0730|consen 670 ALKAVRPS 677 (693)
T ss_pred HHHhhccc
Confidence 87655544
No 92
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.3e-10 Score=130.92 Aligned_cols=208 Identities=15% Similarity=0.152 Sum_probs=126.3
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe----CC----------
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT----SG---------- 399 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g---------- 399 (726)
.+|+|++.+++.|.-++..+ |-.+.+||+||||+|||++|+++++.+.-.... ||
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 36889999999998888766 222557999999999999999998876421100 11
Q ss_pred -CCCCcccccceeeecCCCchhh--hccCce--eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 400 -KGSSAAGLTASVIRDGSSREFY--LEGGAM--VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 400 -~~~~~~gl~~~~~~~~~~~~~~--~~~G~l--~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
.......+.++... . ...+. ...... ..+...|++|||++.|+...+++|+..||+- +..
T Consensus 84 g~hpDviEIDAAs~~-~-VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~~ 148 (702)
T PRK14960 84 GRFIDLIEIDAASRT-K-VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PEH 148 (702)
T ss_pred CCCCceEEecccccC-C-HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-------------CCC
Confidence 00000011111000 0 00000 000000 1223459999999999999999999999862 223
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
+.+|.+||.+ ..++.++++|+. +|.+.... .+.+.
T Consensus 149 v~FILaTtd~-------------~kIp~TIlSRCq-~feFkpLs-------------------------------~eEI~ 183 (702)
T PRK14960 149 VKFLFATTDP-------------QKLPITVISRCL-QFTLRPLA-------------------------------VDEIT 183 (702)
T ss_pred cEEEEEECCh-------------HhhhHHHHHhhh-eeeccCCC-------------------------------HHHHH
Confidence 4555555521 125678889984 44443333 33344
Q ss_pred HHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 555 RYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 555 ~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
+++...-..-...+++++...|.+. ..+++|.+.+++..+.+. +...|+.+||...
T Consensus 184 k~L~~Il~kEgI~id~eAL~~IA~~--------------------S~GdLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 184 KHLGAILEKEQIAADQDAIWQIAES--------------------AQGSLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 4433321112345889999988876 348999999998655443 3567999999876
Q ss_pred HH
Q 004862 635 VR 636 (726)
Q Consensus 635 i~ 636 (726)
+.
T Consensus 240 LG 241 (702)
T PRK14960 240 LG 241 (702)
T ss_pred hc
Confidence 54
No 93
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.28 E-value=3.4e-11 Score=123.47 Aligned_cols=221 Identities=14% Similarity=0.213 Sum_probs=122.9
Q ss_pred CCccCchhH--HHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccccee
Q 004862 334 PSIFGHDDV--KKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASV 411 (726)
Q Consensus 334 p~I~G~~~~--k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~ 411 (726)
-+.+||+.+ -.+++..++-... -..++|+||||||||+||+.++..+....| .++.+.+..
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~-----------ipSmIlWGppG~GKTtlArlia~tsk~~Sy------rfvelSAt~ 200 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNR-----------IPSMILWGPPGTGKTTLARLIASTSKKHSY------RFVELSATN 200 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCC-----------CCceEEecCCCCchHHHHHHHHhhcCCCce------EEEEEeccc
Confidence 346777665 2467776664411 146999999999999999999987765533 122222111
Q ss_pred eecC-CCchhhhccC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCC
Q 004862 412 IRDG-SSREFYLEGG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYD 489 (726)
Q Consensus 412 ~~~~-~~~~~~~~~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~ 489 (726)
.... ..+.|..... .......-|+|||||++++..+|..++...|+|.|+ +|+||-
T Consensus 201 a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~---------------lIGATT------- 258 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDIT---------------LIGATT------- 258 (554)
T ss_pred cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceE---------------EEeccc-------
Confidence 0000 0001100000 011223569999999999999999999999988754 555552
Q ss_pred CccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCC
Q 004862 490 DLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLS 569 (726)
Q Consensus 490 ~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls 569 (726)
....+.+..+|+||.- +|++...+-++--..+.+.|-.+- ........++.. ...++
T Consensus 259 ----ENPSFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~-----dser~~~~l~n~-------------s~~ve 315 (554)
T KOG2028|consen 259 ----ENPSFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLG-----DSERPTDPLPNS-------------SMFVE 315 (554)
T ss_pred ----CCCccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhc-----cccccCCCCCCc-------------chhhh
Confidence 2234558899999994 555655553332222222221111 110000011100 00244
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhC----CCcccHHHHHHHHH
Q 004862 570 ESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKL----SHVATENEVNEAVR 636 (726)
Q Consensus 570 ~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~----~~~V~~~Dv~~ai~ 636 (726)
+.+.+++... .-+..|...+.++++.+.+-.+- +..++.+||.++++
T Consensus 316 ~siidyla~l--------------------sdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq 366 (554)
T KOG2028|consen 316 DSIIDYLAYL--------------------SDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQ 366 (554)
T ss_pred HHHHHHHHHh--------------------cCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHh
Confidence 5555555443 23567777777777744333332 34789999999885
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.28 E-value=2.2e-11 Score=132.94 Aligned_cols=223 Identities=20% Similarity=0.206 Sum_probs=122.9
Q ss_pred CccCchhHHHHHHHHHhCCCcc-cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRK-NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 413 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~-~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~ 413 (726)
+|.|.+..++.+.-++...-.. .......+....++||+||||||||++|++++..+...++... ...+......
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~~l~~~~~g 198 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GSELVRKYIG 198 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hHHHHHHhhh
Confidence 4677777666665444321000 0000000122346999999999999999999998876544210 0111110000
Q ss_pred cCCCchhhhccCceee---cCCCeEEecccCcCC-----------HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEE
Q 004862 414 DGSSREFYLEGGAMVL---ADGGVVCIDEFDKMR-----------PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLA 479 (726)
Q Consensus 414 ~~~~~~~~~~~G~l~l---a~~gvl~iDEi~~~~-----------~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iia 479 (726)
.+.... ...+.. ...+|+||||+|.+. +..+..+.+.+.+-. +. .-..++.||+
T Consensus 199 ---~~~~~i-~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ 266 (364)
T TIGR01242 199 ---EGARLV-REIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIA 266 (364)
T ss_pred ---HHHHHH-HHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEE
Confidence 000000 001111 134699999999873 334555666654311 00 0123678999
Q ss_pred ecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHH
Q 004862 480 AANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYI 557 (726)
Q Consensus 480 a~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi 557 (726)
|||.+. .+++++++ |||-.+.++.+...+ +..++..+.....
T Consensus 267 ttn~~~-------------~ld~al~r~grfd~~i~v~~P~~~~-----r~~Il~~~~~~~~------------------ 310 (364)
T TIGR01242 267 ATNRPD-------------ILDPALLRPGRFDRIIEVPLPDFEG-----RLEILKIHTRKMK------------------ 310 (364)
T ss_pred ecCChh-------------hCChhhcCcccCceEEEeCCcCHHH-----HHHHHHHHHhcCC------------------
Confidence 999642 26777775 999877776544322 2233333221110
Q ss_pred HHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 558 QYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 558 ~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
+.+.++ .+.+... .-..+.+.+.++++.|...|-.+.+..|+.+|+.+|+.-
T Consensus 311 ------l~~~~~---~~~la~~-------------------t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 311 ------LAEDVD---LEAIAKM-------------------TEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred ------CCccCC---HHHHHHH-------------------cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 111111 1112221 123688999999999999998888899999999999864
No 95
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.26 E-value=6.1e-10 Score=112.73 Aligned_cols=199 Identities=19% Similarity=0.207 Sum_probs=119.1
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC-cEEeCCCCCCcccccce---
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI-AVYTSGKGSSAAGLTAS--- 410 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~-~~~~~g~~~~~~gl~~~--- 410 (726)
++.|++.+..++.=++.++ .-.|.|++||||||||..+++.++.+.- ..+.++.- .++++
T Consensus 37 e~~gQe~vV~~L~~a~~~~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl----~lnaSder 100 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRR------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL----ELNASDER 100 (346)
T ss_pred hhcchHHHHHHHHHHHhhc------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh----hhcccccc
Confidence 5689999999999888764 1279999999999999999998776543 22222211 11222
Q ss_pred ---eeecCCCchhhhccCc------eeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEec
Q 004862 411 ---VIRDGSSREFYLEGGA------MVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAA 481 (726)
Q Consensus 411 ---~~~~~~~~~~~~~~G~------l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~ 481 (726)
+.+... ..|..-... -....--|++|||.|.|+.+.|.+|...||+-. ..++++--|
T Consensus 101 Gisvvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-------------~~trFiLIc 166 (346)
T KOG0989|consen 101 GISVVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-------------RTTRFILIC 166 (346)
T ss_pred cccchhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-------------cceEEEEEc
Confidence 122110 011100000 011222599999999999999999999999621 235677777
Q ss_pred CCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhH
Q 004862 482 NPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCR 561 (726)
Q Consensus 482 Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~ 561 (726)
|-. ..++.++.||..= |.++... |..+..++.. |. .
T Consensus 167 nyl-------------srii~pi~SRC~K-frFk~L~----d~~iv~rL~~------------------------Ia--~ 202 (346)
T KOG0989|consen 167 NYL-------------SRIIRPLVSRCQK-FRFKKLK----DEDIVDRLEK------------------------IA--S 202 (346)
T ss_pred CCh-------------hhCChHHHhhHHH-hcCCCcc----hHHHHHHHHH------------------------HH--H
Confidence 732 2478899999752 2223333 1122221111 11 1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCccc-HHHHHH
Q 004862 562 LECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVAT-ENEVNE 633 (726)
Q Consensus 562 ~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~-~~Dv~~ 633 (726)
.-...++++|.+.|..+ ..++.|..+.++. ..|. +...++ ...+++
T Consensus 203 -~E~v~~d~~al~~I~~~--------------------S~GdLR~Ait~Lq---sls~--~gk~It~~~~~e~ 249 (346)
T KOG0989|consen 203 -KEGVDIDDDALKLIAKI--------------------SDGDLRRAITTLQ---SLSL--LGKRITTSLVNEE 249 (346)
T ss_pred -HhCCCCCHHHHHHHHHH--------------------cCCcHHHHHHHHH---Hhhc--cCcccchHHHHHH
Confidence 12335889999999886 3478888888874 4444 455566 444443
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.4e-10 Score=128.81 Aligned_cols=210 Identities=17% Similarity=0.092 Sum_probs=126.7
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe----CCC---------
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT----SGK--------- 400 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g~--------- 400 (726)
-+|+||+.+++.|.-++..+. -.+.+||+||||||||++|+.+++.+.-.... ||.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE 84 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence 368899999999988886651 11347999999999999999998876421110 111
Q ss_pred --CCCcccccceeeecCCCchhh--hccC--ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 401 --GSSAAGLTASVIRDGSSREFY--LEGG--AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 401 --~~~~~gl~~~~~~~~~~~~~~--~~~G--~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
......+.++... . ..++. .+.- .-..+...|++|||+++|+.+.+++|+..||+- |..
T Consensus 85 g~~~d~~eidaas~~-~-v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~~ 149 (509)
T PRK14958 85 GRFPDLFEVDAASRT-K-VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-------------PSH 149 (509)
T ss_pred CCCceEEEEcccccC-C-HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-------------CCC
Confidence 0000111111000 0 00000 0000 001223459999999999999999999999962 334
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
+.+|.+|+.+ ..++++++||+ .+|.+...+ .+.+.
T Consensus 150 ~~fIlattd~-------------~kl~~tI~SRc-~~~~f~~l~-------------------------------~~~i~ 184 (509)
T PRK14958 150 VKFILATTDH-------------HKLPVTVLSRC-LQFHLAQLP-------------------------------PLQIA 184 (509)
T ss_pred eEEEEEECCh-------------HhchHHHHHHh-hhhhcCCCC-------------------------------HHHHH
Confidence 5555555521 12667799998 444443333 23333
Q ss_pred HHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 555 RYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 555 ~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
+++...-+.-...+++++.+.|.+. ..+++|.+.+++..+.+. +...|+.+||.+.
T Consensus 185 ~~l~~il~~egi~~~~~al~~ia~~--------------------s~GslR~al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 185 AHCQHLLKEENVEFENAALDLLARA--------------------ANGSVRDALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCcHHHHHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 3333221112335788998888776 348899999999765443 3567999999987
Q ss_pred HHHH
Q 004862 635 VRLF 638 (726)
Q Consensus 635 i~l~ 638 (726)
+...
T Consensus 241 lg~~ 244 (509)
T PRK14958 241 LGTI 244 (509)
T ss_pred HCCC
Confidence 6443
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=5.7e-10 Score=124.98 Aligned_cols=215 Identities=13% Similarity=0.169 Sum_probs=130.7
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe--------CCCCCCcc
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT--------SGKGSSAA 405 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~--------~g~~~~~~ 405 (726)
-+++||+.+.+.+.-++..+ |-..++||+||||||||++|+.+++.+.-.... ++.-.+..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~ 89 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCI 89 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHH
Confidence 35789999999887777665 223689999999999999999998876432111 11000000
Q ss_pred cccc----eee-ecCC--Cch-----hhhccC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 406 GLTA----SVI-RDGS--SRE-----FYLEGG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 406 gl~~----~~~-~~~~--~~~-----~~~~~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
.+.. .+. -+.. ++. ..-... .-..++..|++|||++.|+...++.|+..||+. +
T Consensus 90 ~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p 156 (507)
T PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------P 156 (507)
T ss_pred HHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------C
Confidence 0000 000 0000 000 000000 012356779999999999999999999999852 3
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
..+.+|.+|+.+ ..+++++.+|+ ..+.+.... .+.
T Consensus 157 ~~~vfI~aTte~-------------~kI~~tI~SRc-~~~ef~~ls-------------------------------~~e 191 (507)
T PRK06645 157 PHIIFIFATTEV-------------QKIPATIISRC-QRYDLRRLS-------------------------------FEE 191 (507)
T ss_pred CCEEEEEEeCCh-------------HHhhHHHHhcc-eEEEccCCC-------------------------------HHH
Confidence 345666666521 13778899998 445454333 233
Q ss_pred HHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 004862 553 LKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN 632 (726)
Q Consensus 553 L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~ 632 (726)
+..|+.+.-+.-...++++|.+.|... ..+++|.+.+++..+.+++.-. ...|+.+||.
T Consensus 192 l~~~L~~i~~~egi~ie~eAL~~Ia~~--------------------s~GslR~al~~Ldkai~~~~~~-~~~It~~~V~ 250 (507)
T PRK06645 192 IFKLLEYITKQENLKTDIEALRIIAYK--------------------SEGSARDAVSILDQAASMSAKS-DNIISPQVIN 250 (507)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhhccC-CCCcCHHHHH
Confidence 333333322112345889999888775 3489999999998776665311 3469999999
Q ss_pred HHHHHH
Q 004862 633 EAVRLF 638 (726)
Q Consensus 633 ~ai~l~ 638 (726)
+.+.+.
T Consensus 251 ~llg~~ 256 (507)
T PRK06645 251 QMLGLV 256 (507)
T ss_pred HHHCCC
Confidence 876443
No 98
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.25 E-value=5.5e-11 Score=129.88 Aligned_cols=191 Identities=17% Similarity=0.188 Sum_probs=110.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCce---eecCCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAM---VLADGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l---~la~~gvl~iDEi~~~~ 444 (726)
.++||+||||||||++|++++..+...++... ...+...... .+...+. ..+ ......|+||||+|.+.
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~~~fi~i~----~s~l~~k~~g---e~~~~lr-~lf~~A~~~~P~ILfIDEID~i~ 251 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV----GSEFVQKYLG---EGPRMVR-DVFRLARENAPSIIFIDEVDSIA 251 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe----hHHHHHHhcc---hhHHHHH-HHHHHHHhcCCeEEEEECHhhhc
Confidence 57999999999999999999998766544210 0001000000 0000000 001 11235699999999863
Q ss_pred H-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCee
Q 004862 445 P-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLI 511 (726)
Q Consensus 445 ~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli 511 (726)
. ..+..+.+.+.+-. |. .-..++.||+|||.+. .+++++++ |||..
T Consensus 252 ~~r~~~~~~~d~~~~r~l~~LL~~ld------~~--~~~~~v~VI~aTN~~d-------------~LDpAllR~GRfd~~ 310 (398)
T PTZ00454 252 TKRFDAQTGADREVQRILLELLNQMD------GF--DQTTNVKVIMATNRAD-------------TLDPALLRPGRLDRK 310 (398)
T ss_pred cccccccCCccHHHHHHHHHHHHHhh------cc--CCCCCEEEEEecCCch-------------hCCHHHcCCCcccEE
Confidence 2 23344445443210 00 0123578999999642 37788887 99988
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
+.++.+..+. +..++..+..... +.+.+. .+.+...
T Consensus 311 I~~~~P~~~~-----R~~Il~~~~~~~~------------------------l~~dvd---~~~la~~------------ 346 (398)
T PTZ00454 311 IEFPLPDRRQ-----KRLIFQTITSKMN------------------------LSEEVD---LEDFVSR------------ 346 (398)
T ss_pred EEeCCcCHHH-----HHHHHHHHHhcCC------------------------CCcccC---HHHHHHH------------
Confidence 8776444222 2334433322111 111111 1111111
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
.-..|.+++.++++.|...|--+.+..|+.+|+.+|+...
T Consensus 347 -------t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 347 -------PEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred -------cCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 2347899999999999888887888899999999998764
No 99
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=6.9e-10 Score=126.24 Aligned_cols=207 Identities=19% Similarity=0.208 Sum_probs=127.1
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe----CCCCC--------
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT----SGKGS-------- 402 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g~~~-------- 402 (726)
+|+|++.+++.|.-++..+ |-.+.+||+|++|+|||++|+.+++.+.-.... ||.-.
T Consensus 17 dIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g 85 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAG 85 (709)
T ss_pred HHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhcc
Confidence 5789999999998888765 112458999999999999999998865321110 11000
Q ss_pred Cccc---ccceeeecCCCch--h--hhccC--ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 403 SAAG---LTASVIRDGSSRE--F--YLEGG--AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 403 ~~~g---l~~~~~~~~~~~~--~--~~~~G--~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
...+ +.++. ..+. . .++.- .-..+...|++|||+++|+...++.|+..||+- +.
T Consensus 86 ~~~DvlEidaAs----~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~ 148 (709)
T PRK08691 86 RYVDLLEIDAAS----NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PE 148 (709)
T ss_pred CccceEEEeccc----cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-------------CC
Confidence 0000 10000 0000 0 00000 001244569999999999999999999999952 23
Q ss_pred ceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHH
Q 004862 474 RTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWL 553 (726)
Q Consensus 474 ~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L 553 (726)
.+.+|.+||.+ ..++.+++||+ +.|.+... +.+.+
T Consensus 149 ~v~fILaTtd~-------------~kL~~TIrSRC-~~f~f~~L-------------------------------s~eeI 183 (709)
T PRK08691 149 HVKFILATTDP-------------HKVPVTVLSRC-LQFVLRNM-------------------------------TAQQV 183 (709)
T ss_pred CcEEEEEeCCc-------------cccchHHHHHH-hhhhcCCC-------------------------------CHHHH
Confidence 45566666522 13667788888 44433333 33333
Q ss_pred HHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHH
Q 004862 554 KRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNE 633 (726)
Q Consensus 554 ~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ 633 (726)
.+++...-..-...+++++...|.++ ..+++|.+.+++..+.++ +...|+.++|..
T Consensus 184 ~~~L~~Il~kEgi~id~eAL~~Ia~~--------------------A~GslRdAlnLLDqaia~----g~g~It~e~V~~ 239 (709)
T PRK08691 184 ADHLAHVLDSEKIAYEPPALQLLGRA--------------------AAGSMRDALSLLDQAIAL----GSGKVAENDVRQ 239 (709)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHH--------------------hCCCHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 34433322222335889999999886 348999999999766654 245799999998
Q ss_pred HHHHH
Q 004862 634 AVRLF 638 (726)
Q Consensus 634 ai~l~ 638 (726)
.+...
T Consensus 240 lLG~~ 244 (709)
T PRK08691 240 MIGAV 244 (709)
T ss_pred HHccc
Confidence 76543
No 100
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.24 E-value=4.7e-10 Score=127.90 Aligned_cols=204 Identities=14% Similarity=0.114 Sum_probs=119.9
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeE
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFI 513 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~ 513 (726)
||+|||||.+....+..|+..++--.. ..+++.|||++|+.. -...+.+++.+||..-..
T Consensus 872 IIILDEID~L~kK~QDVLYnLFR~~~~----------s~SKLiLIGISNdlD----------LperLdPRLRSRLg~eeI 931 (1164)
T PTZ00112 872 ILIIDEIDYLITKTQKVLFTLFDWPTK----------INSKLVLIAISNTMD----------LPERLIPRCRSRLAFGRL 931 (1164)
T ss_pred EEEeehHhhhCccHHHHHHHHHHHhhc----------cCCeEEEEEecCchh----------cchhhhhhhhhccccccc
Confidence 799999999988788888888873211 134688999999521 111355677888763211
Q ss_pred eccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcc
Q 004862 514 VKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANE 593 (726)
Q Consensus 514 l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~ 593 (726)
..++. +.+.|+..+...-......++++|.+++.+.-.
T Consensus 932 vF~PY------------------------------TaEQL~dILk~RAe~A~gVLdDdAIELIArkVA------------ 969 (1164)
T PTZ00112 932 VFSPY------------------------------KGDEIEKIIKERLENCKEIIDHTAIQLCARKVA------------ 969 (1164)
T ss_pred cCCCC------------------------------CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh------------
Confidence 12222 222333332221111223589999999987421
Q ss_pred cCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHH
Q 004862 594 TGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKR 673 (726)
Q Consensus 594 ~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (726)
...+.+|....++|.|...+ ....|+++||.+|+..++.+.....- .+++..+.-.+..+...++.
T Consensus 970 -----q~SGDARKALDILRrAgEik---egskVT~eHVrkAleeiE~srI~e~I------ktLPlHqKLVLlALIlLlk~ 1035 (1164)
T PTZ00112 970 -----NVSGDIRKALQICRKAFENK---RGQKIVPRDITEATNQLFDSPLTNAI------NYLPWPFKMFLTCLIVELRM 1035 (1164)
T ss_pred -----hcCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHhhhHHHHH------HcCCHHHHHHHHHHHHHHhh
Confidence 23488999999999887653 46689999999999766554422111 12222222222212111111
Q ss_pred hcCCCCCCCHHHHHHHHHH--------cCCCHHH--HHHHHHHHHHCCeEEE
Q 004862 674 RIPIGNQISERRLIDDLTR--------MGMNESI--IRRALIIMHQRDEVEY 715 (726)
Q Consensus 674 ~~~~~~~~~~~~l~~~~~~--------~g~~~~~--~~~~l~~l~~~g~i~~ 715 (726)
.+ ...+..++|++..+. +|+++.+ +...|.+|...|+|..
T Consensus 1036 -tg-~~~i~TGEVYerYk~Lce~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1036 -LN-DFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred -cC-CCceeHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCeEEe
Confidence 01 114666666655542 3565555 8999999999999864
No 101
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=1.9e-10 Score=137.52 Aligned_cols=260 Identities=16% Similarity=0.159 Sum_probs=150.1
Q ss_pred CCCHHHHHHHHHHhc----------CcchHHHHHHhhcCCccCchhHHHHHHHHHhC----CCcccCCCCccccCcceEE
Q 004862 306 AFTQEEIEKFKKFAS----------QPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFG----GSRKNLPDGVKLRGDVNVL 371 (726)
Q Consensus 306 ~~~~~~~~~~~~~~~----------~~~~~~~l~~si~p~I~G~~~~k~aill~L~~----~~~~~~~~g~~~r~~~~vL 371 (726)
.++.+++..+-.-+. ....+..+...+.-.|+|++.+.+.+.-++.. ..... +.-.++|
T Consensus 530 ~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~L 602 (857)
T PRK10865 530 KVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFL 602 (857)
T ss_pred ccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEE
Confidence 466667655543221 12345667888999999999987776655532 21111 1113799
Q ss_pred EECCCchhHHHHHHHHHHhCCCc---EE-eCCCCCCcccccceeeecCCCchhhhc-cC----ceeecCCCeEEecccCc
Q 004862 372 LLGDPSTAKSQFLKFVEKTAPIA---VY-TSGKGSSAAGLTASVIRDGSSREFYLE-GG----AMVLADGGVVCIDEFDK 442 (726)
Q Consensus 372 L~G~pGtGKt~la~~i~~~~~~~---~~-~~g~~~~~~gl~~~~~~~~~~~~~~~~-~G----~l~la~~gvl~iDEi~~ 442 (726)
|+||||||||++|++++..+... +. ..................+ .+..... .| ++.....+|++|||+++
T Consensus 603 f~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~-pgy~g~~~~g~l~~~v~~~p~~vLllDEiek 681 (857)
T PRK10865 603 FLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAP-PGYVGYEEGGYLTEAVRRRPYSVILLDEVEK 681 (857)
T ss_pred EECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCC-CcccccchhHHHHHHHHhCCCCeEEEeehhh
Confidence 99999999999999999876422 11 1000000000000000000 0000011 11 12233568999999999
Q ss_pred CCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCC----cCCCcc-----c---hhhhccCchhhhcccCe
Q 004862 443 MRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSG----RYDDLK-----S---AQDNIDLQTTILSRFDL 510 (726)
Q Consensus 443 ~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g----~~~~~~-----~---~~~~~~l~~~Ll~RFdl 510 (726)
++++.+..|+++|++|.++- ..|....+ .++.||+|+|.... +|+... . ......|.|+|++|+|.
T Consensus 682 a~~~v~~~Ll~ile~g~l~d-~~gr~vd~-rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~ 759 (857)
T PRK10865 682 AHPDVFNILLQVLDDGRLTD-GQGRTVDF-RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDE 759 (857)
T ss_pred CCHHHHHHHHHHHhhCceec-CCceEEee-cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCe
Confidence 99999999999999998763 23333333 24679999996211 121110 0 12245588999999998
Q ss_pred eeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 004862 511 IFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQ 590 (726)
Q Consensus 511 i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~ 590 (726)
++.+.+...+ .-..|+++.+..... +. .+..+...+++++.+.|..+-
T Consensus 760 iivF~PL~~e-dl~~Iv~~~L~~l~~------------------rl---~~~gi~l~is~~al~~L~~~g---------- 807 (857)
T PRK10865 760 VVVFHPLGEQ-HIASIAQIQLQRLYK------------------RL---EERGYEIHISDEALKLLSENG---------- 807 (857)
T ss_pred eEecCCCCHH-HHHHHHHHHHHHHHH------------------HH---HhCCCcCcCCHHHHHHHHHcC----------
Confidence 8877766533 234555444432111 10 122245579999999998751
Q ss_pred hcccCCCCCccCChhHHHHHHHHH
Q 004862 591 ANETGEAAPIPITVRQLEAIVRLS 614 (726)
Q Consensus 591 ~~~~~~~~~~~~t~R~L~~lirla 614 (726)
.+-...+|.|.++|+.-
T Consensus 808 -------y~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 808 -------YDPVYGARPLKRAIQQQ 824 (857)
T ss_pred -------CCccCChHHHHHHHHHH
Confidence 12335689999888643
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.24 E-value=2.1e-10 Score=135.87 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=84.8
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC----------cEEeCCCC
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI----------AVYTSGKG 401 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~----------~~~~~g~~ 401 (726)
-...++|++....-++-.|... ...|+||+||||||||++++.++..... .++..
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~--- 244 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL--- 244 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe---
Confidence 3445789988777666545433 2268999999999999999999876521 12210
Q ss_pred CCcccccceeeecCCCchhhhccCc-e---eecCCCeEEecccCcCC---------HHHHHHHHHHHhcceEeeeccceE
Q 004862 402 SSAAGLTASVIRDGSSREFYLEGGA-M---VLADGGVVCIDEFDKMR---------PEDRVAIHEAMEQQTISIAKAGIT 468 (726)
Q Consensus 402 ~~~~gl~~~~~~~~~~~~~~~~~G~-l---~la~~gvl~iDEi~~~~---------~~~~~~L~~~me~~~i~i~~~g~~ 468 (726)
+...+.+.. ...|+|...-.. + ....+.|+||||++.+. .+.++.|...|+.|.
T Consensus 245 -~~~~l~a~~---~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~--------- 311 (731)
T TIGR02639 245 -DMGSLLAGT---KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK--------- 311 (731)
T ss_pred -cHHHHhhhc---cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC---------
Confidence 000111110 112333211100 1 11235699999999874 234567777776554
Q ss_pred EEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 469 TVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 469 ~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
+.+|+|||+. .....+...++|.+||.. +.+..+.
T Consensus 312 ------i~~IgaTt~~--------e~~~~~~~d~al~rRf~~-i~v~~p~ 346 (731)
T TIGR02639 312 ------LRCIGSTTYE--------EYKNHFEKDRALSRRFQK-IDVGEPS 346 (731)
T ss_pred ------eEEEEecCHH--------HHHHHhhhhHHHHHhCce-EEeCCCC
Confidence 5689999862 112334578899999984 4454443
No 103
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.24 E-value=1.6e-09 Score=117.12 Aligned_cols=206 Identities=15% Similarity=0.117 Sum_probs=118.5
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc------EEeCCCCCCcccc
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA------VYTSGKGSSAAGL 407 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~------~~~~g~~~~~~gl 407 (726)
.+++|++.++..+.-++..+. ..|+||+||||||||++|+++++..... ++.+..... ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~------------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~-~~~ 81 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN------------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF-DQG 81 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh-hcc
Confidence 346799998888776665441 1489999999999999999998765321 121110000 000
Q ss_pred cceeeecCC---------------Cchhh----hccCce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccce
Q 004862 408 TASVIRDGS---------------SREFY----LEGGAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGI 467 (726)
Q Consensus 408 ~~~~~~~~~---------------~~~~~----~~~G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~ 467 (726)
......++. ...+. ...+.. ..++..+++|||++.++++.+..|+..|++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-------- 153 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-------- 153 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc--------
Confidence 000000000 00000 000111 12456799999999999999999999998532
Q ss_pred EEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhccccccccccc
Q 004862 468 TTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVS 547 (726)
Q Consensus 468 ~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 547 (726)
..+++|.++|.+ ..+.++|.+|+.. +.+.++.
T Consensus 154 -----~~~~~Il~~~~~-------------~~~~~~L~sr~~~-v~~~~~~----------------------------- 185 (337)
T PRK12402 154 -----RTCRFIIATRQP-------------SKLIPPIRSRCLP-LFFRAPT----------------------------- 185 (337)
T ss_pred -----CCCeEEEEeCCh-------------hhCchhhcCCceE-EEecCCC-----------------------------
Confidence 124455555421 0245678888743 3333322
Q ss_pred CCHHHHHHHHHH-hHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcc
Q 004862 548 KEENWLKRYIQY-CRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVA 626 (726)
Q Consensus 548 ~~~~~L~~yi~~-a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V 626 (726)
.+.+..++.. +++ -...+++++.+.|..+ .++++|.+.+.+..+ + .....|
T Consensus 186 --~~~~~~~l~~~~~~-~~~~~~~~al~~l~~~--------------------~~gdlr~l~~~l~~~---~--~~~~~I 237 (337)
T PRK12402 186 --DDELVDVLESIAEA-EGVDYDDDGLELIAYY--------------------AGGDLRKAILTLQTA---A--LAAGEI 237 (337)
T ss_pred --HHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHH---H--HcCCCC
Confidence 2222333322 221 2345899999999886 368899988777532 2 124579
Q ss_pred cHHHHHHHHH
Q 004862 627 TENEVNEAVR 636 (726)
Q Consensus 627 ~~~Dv~~ai~ 636 (726)
+.+|+.+++.
T Consensus 238 t~~~v~~~~~ 247 (337)
T PRK12402 238 TMEAAYEALG 247 (337)
T ss_pred CHHHHHHHhC
Confidence 9999998764
No 104
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.4e-10 Score=128.46 Aligned_cols=211 Identities=17% Similarity=0.137 Sum_probs=123.7
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE----E-----eCCC----
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV----Y-----TSGK---- 400 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~----~-----~~g~---- 400 (726)
.+|+||+.+++.|.-++..+. -.+-+||+|++|+|||++++.+++.+.-.. . -||.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC 84 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRAC 84 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHH
Confidence 358899999999988887661 113369999999999999999988764210 0 0110
Q ss_pred -------CCCcccccceeeecCCCchh-hhccCc-e--eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEE
Q 004862 401 -------GSSAAGLTASVIRDGSSREF-YLEGGA-M--VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITT 469 (726)
Q Consensus 401 -------~~~~~gl~~~~~~~~~~~~~-~~~~G~-l--~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~ 469 (726)
......+.++... ...+. .+.... . ......|++|||+++|+...+++|+..||+-
T Consensus 85 ~~I~aG~hpDviEIdAas~~--gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP----------- 151 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNR--GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP----------- 151 (700)
T ss_pred HHHHcCCCCcceEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-----------
Confidence 0000011111000 00000 000000 0 1123359999999999999999999999862
Q ss_pred EeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCC
Q 004862 470 VLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKE 549 (726)
Q Consensus 470 ~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 549 (726)
+.++.+|.+||. ...+.++++||+ ..|.+....
T Consensus 152 --P~~v~FILaTte-------------p~kLlpTIrSRC-q~f~f~~ls------------------------------- 184 (700)
T PRK12323 152 --PEHVKFILATTD-------------PQKIPVTVLSRC-LQFNLKQMP------------------------------- 184 (700)
T ss_pred --CCCceEEEEeCC-------------hHhhhhHHHHHH-HhcccCCCC-------------------------------
Confidence 234566666652 223778999998 444444333
Q ss_pred HHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHH
Q 004862 550 ENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATEN 629 (726)
Q Consensus 550 ~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~ 629 (726)
.+.+.+++.+.-..-...+++++.+.|.+. ..+++|...+++..+.+.. ...|+.+
T Consensus 185 ~eei~~~L~~Il~~Egi~~d~eAL~~IA~~--------------------A~Gs~RdALsLLdQaia~~----~~~It~~ 240 (700)
T PRK12323 185 PGHIVSHLDAILGEEGIAHEVNALRLLAQA--------------------AQGSMRDALSLTDQAIAYS----AGNVSEE 240 (700)
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhc----cCCcCHH
Confidence 222222222211111234778888888765 3488999988886554432 3468888
Q ss_pred HHHHHHHHHh
Q 004862 630 EVNEAVRLFT 639 (726)
Q Consensus 630 Dv~~ai~l~~ 639 (726)
+|.+.+.+..
T Consensus 241 ~V~~~LG~~d 250 (700)
T PRK12323 241 AVRGMLGAID 250 (700)
T ss_pred HHHHHhCCCC
Confidence 8887665443
No 105
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.23 E-value=1.8e-09 Score=115.89 Aligned_cols=202 Identities=16% Similarity=0.184 Sum_probs=121.0
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD 414 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~ 414 (726)
+++|++.++..+.-++-.+. ..|+||+||||||||++++.+++.+....+. .....++++-...
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~------------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~----~~~i~~~~~~~~~ 81 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN------------MPHLLFAGPPGTGKTTAALALARELYGEDWR----ENFLELNASDERG 81 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHHcCCccc----cceEEeccccccc
Confidence 36799998888877765441 1479999999999999999998765322110 0011111110000
Q ss_pred CCC-----chhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCC
Q 004862 415 GSS-----REFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYD 489 (726)
Q Consensus 415 ~~~-----~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~ 489 (726)
... ..+. ....+..++..+++|||++.++.+.+..|+..|++.. ..+.+|.++|..
T Consensus 82 ~~~~~~~i~~~~-~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-------------~~~~lIl~~~~~----- 142 (319)
T PRK00440 82 IDVIRNKIKEFA-RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-------------QNTRFILSCNYS----- 142 (319)
T ss_pred hHHHHHHHHHHH-hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-------------CCCeEEEEeCCc-----
Confidence 000 0000 0011111345699999999999998999999987521 234566666632
Q ss_pred CccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCC
Q 004862 490 DLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLS 569 (726)
Q Consensus 490 ~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls 569 (726)
..+.+++.+|+.. +.+.+.. .+.+.+++...-..-...++
T Consensus 143 --------~~l~~~l~sr~~~-~~~~~l~-------------------------------~~ei~~~l~~~~~~~~~~i~ 182 (319)
T PRK00440 143 --------SKIIDPIQSRCAV-FRFSPLK-------------------------------KEAVAERLRYIAENEGIEIT 182 (319)
T ss_pred --------cccchhHHHHhhe-eeeCCCC-------------------------------HHHHHHHHHHHHHHcCCCCC
Confidence 1245678888764 3443333 22333333321111234689
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 570 ESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 570 ~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
+++.+.|... ..+++|.+.+.++.+.+. ...|+.++|..++.
T Consensus 183 ~~al~~l~~~--------------------~~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 183 DDALEAIYYV--------------------SEGDMRKAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 9999998775 347899998888755432 46799999998764
No 106
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.5e-11 Score=121.76 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=97.2
Q ss_pred HHHHHhhcCCccCchhHHHHHHHHHhCCCcccCC---CCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC-CCC
Q 004862 326 KTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLP---DGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS-GKG 401 (726)
Q Consensus 326 ~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~---~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~-g~~ 401 (726)
..|...+.--+.||+.+|+.+..+...-.++-.. +..---+..||||+||+|+|||.||+.+|+++...+-.. .+.
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 3455566777999999999998877654332111 111223457999999999999999999999987765432 222
Q ss_pred CCcccccceeeecCCCchhhhc--cCceeecCCCeEEecccCcCC--------------HHHHHHHHHHHhcceEeeecc
Q 004862 402 SSAAGLTASVIRDGSSREFYLE--GGAMVLADGGVVCIDEFDKMR--------------PEDRVAIHEAMEQQTISIAKA 465 (726)
Q Consensus 402 ~~~~gl~~~~~~~~~~~~~~~~--~G~l~la~~gvl~iDEi~~~~--------------~~~~~~L~~~me~~~i~i~~~ 465 (726)
.+.+|..+.-+..- -...++ ...+..|..||++|||||++. +..|.+|+..||--..++...
T Consensus 133 LTEAGYVGEDVENi--llkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPq 210 (408)
T COG1219 133 LTEAGYVGEDVENI--LLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQ 210 (408)
T ss_pred hhhccccchhHHHH--HHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCC
Confidence 23333221100000 000011 123456889999999999974 346899999999777677666
Q ss_pred ceEEEeeCceEEEEecCC
Q 004862 466 GITTVLNSRTSVLAAANP 483 (726)
Q Consensus 466 g~~~~l~~~~~iiaa~Np 483 (726)
|+...-+-.+.-+-|+|-
T Consensus 211 GGRKHP~Qe~iqvDT~NI 228 (408)
T COG1219 211 GGRKHPQQEFIQVDTSNI 228 (408)
T ss_pred CCCCCCccceEEEcccce
Confidence 654333334444555554
No 107
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.22 E-value=1.4e-11 Score=119.11 Aligned_cols=105 Identities=23% Similarity=0.273 Sum_probs=72.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC----cEEeCCCCCCcccccceeeec----C--CCchhhhccCceeecCCCeEEe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI----AVYTSGKGSSAAGLTASVIRD----G--SSREFYLEGGAMVLADGGVVCI 437 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~----~~~~~g~~~~~~gl~~~~~~~----~--~~~~~~~~~G~l~la~~gvl~i 437 (726)
.++||+||+|+|||.+|+++++.+.- .... +.++...+ . ........+|....+.+||+||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~---------~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVll 74 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIR---------IDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLL 74 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEE---------EEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHH---------HhhhcccccchHHhhhhhhhhcccceeeccchhhhhh
Confidence 68999999999999999999988762 1110 11111110 0 0111222344455567789999
Q ss_pred cccCcCCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC
Q 004862 438 DEFDKMRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP 483 (726)
Q Consensus 438 DEi~~~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np 483 (726)
|||||+.+ ..|..|+++||.++++-. .|....+ .++.+|+|+|-
T Consensus 75 DEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd~-~n~ifI~Tsn~ 129 (171)
T PF07724_consen 75 DEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVDT-SNIIFIMTSNF 129 (171)
T ss_dssp ETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEEG-TTEEEEEEESS
T ss_pred HHHhhccccccccchhhHHHHHHHHHHHhcccceecc-cceEEEe-CCceEEEeccc
Confidence 99999999 999999999999998743 3433333 47899999995
No 108
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.22 E-value=4.6e-10 Score=114.34 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=113.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.+++|+|+||||||+||+++++.....-. ...-+++.... ... -.....++++|||++.++...
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~------~~~~i~~~~~~----~~~------~~~~~~~~liiDdi~~l~~~~ 106 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGR------NARYLDAASPL----LAF------DFDPEAELYAVDDVERLDDAQ 106 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCC------cEEEEehHHhH----HHH------hhcccCCEEEEeChhhcCchH
Confidence 58999999999999999999876421100 00001111000 000 012346799999999999989
Q ss_pred HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhccc--CeeeEeccCCChhhhHH
Q 004862 448 RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF--DLIFIVKDIRMYNQDKL 525 (726)
Q Consensus 448 ~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF--dli~~l~d~~~~~~d~~ 525 (726)
+..|+.+++... .. ....++.+++.+ .....+.+.|.+|| .+.+.++++.+++ +..
T Consensus 107 ~~~L~~~~~~~~----~~-------~~~~vl~~~~~~----------~~~~~l~~~L~sr~~~~~~i~l~pl~~~~-~~~ 164 (227)
T PRK08903 107 QIALFNLFNRVR----AH-------GQGALLVAGPAA----------PLALPLREDLRTRLGWGLVYELKPLSDAD-KIA 164 (227)
T ss_pred HHHHHHHHHHHH----Hc-------CCcEEEEeCCCC----------HHhCCCCHHHHHHHhcCeEEEecCCCHHH-HHH
Confidence 999999886421 11 122344555421 01223568899998 4777787776442 222
Q ss_pred HHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChh
Q 004862 526 IASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVR 605 (726)
Q Consensus 526 i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R 605 (726)
+.. ++ +.. ....+++++.+.|.+. |++|+|
T Consensus 165 ~l~--------------------------~~---~~~-~~v~l~~~al~~L~~~--------------------~~gn~~ 194 (227)
T PRK08903 165 ALK--------------------------AA---AAE-RGLQLADEVPDYLLTH--------------------FRRDMP 194 (227)
T ss_pred HHH--------------------------HH---HHH-cCCCCCHHHHHHHHHh--------------------ccCCHH
Confidence 211 11 111 2346899999999874 999999
Q ss_pred HHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 606 QLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 606 ~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
+|.++++.-.+.|.... ..|+...+.+++
T Consensus 195 ~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l 223 (227)
T PRK08903 195 SLMALLDALDRYSLEQK-RPVTLPLLREML 223 (227)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence 99999997666665444 579988888775
No 109
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.20 E-value=6.4e-10 Score=133.27 Aligned_cols=261 Identities=18% Similarity=0.173 Sum_probs=151.3
Q ss_pred CCCCHHHHHHHHHHh-c---------CcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEEC
Q 004862 305 AAFTQEEIEKFKKFA-S---------QPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLG 374 (726)
Q Consensus 305 ~~~~~~~~~~~~~~~-~---------~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G 374 (726)
..++.+++..+-.-+ . +......|...+.-.|+||+.+.+.+.-++...... ..+ ..|.-..+||+|
T Consensus 470 ~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g-l~~--~~~p~~~~lf~G 546 (821)
T CHL00095 470 PVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG-LKN--PNRPIASFLFSG 546 (821)
T ss_pred CccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc-ccC--CCCCceEEEEEC
Confidence 346777766554322 1 123345678889999999999999887776522100 000 012223589999
Q ss_pred CCchhHHHHHHHHHHhCCC---cEEeCCCCCCcccc-cc-eeeecCCCchhhh-ccCc----eeecCCCeEEecccCcCC
Q 004862 375 DPSTAKSQFLKFVEKTAPI---AVYTSGKGSSAAGL-TA-SVIRDGSSREFYL-EGGA----MVLADGGVVCIDEFDKMR 444 (726)
Q Consensus 375 ~pGtGKt~la~~i~~~~~~---~~~~~g~~~~~~gl-~~-~~~~~~~~~~~~~-~~G~----l~la~~gvl~iDEi~~~~ 444 (726)
|||||||.+|+++++.+.. .+.... .+...+. .. .....+ .|-..+ +.|. +......|++|||+++++
T Consensus 547 p~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~~l~g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~ 624 (821)
T CHL00095 547 PTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVSKLIGSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH 624 (821)
T ss_pred CCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHHHhcCCC-CcccCcCccchHHHHHHhCCCeEEEECChhhCC
Confidence 9999999999999987632 111100 0011000 00 000000 010011 1121 222344799999999999
Q ss_pred HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCC---------cCCCcc---------chh------hhccC
Q 004862 445 PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSG---------RYDDLK---------SAQ------DNIDL 500 (726)
Q Consensus 445 ~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g---------~~~~~~---------~~~------~~~~l 500 (726)
++.++.|+++||+|.++... |....+ .++.+|.|+|.... -|.... .+. -...|
T Consensus 625 ~~v~~~Llq~le~g~~~d~~-g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f 702 (821)
T CHL00095 625 PDIFNLLLQILDDGRLTDSK-GRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFF 702 (821)
T ss_pred HHHHHHHHHHhccCceecCC-CcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhc
Confidence 99999999999999987543 444444 47999999996211 021100 000 12238
Q ss_pred chhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHH-
Q 004862 501 QTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQ- 579 (726)
Q Consensus 501 ~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~- 579 (726)
+|.|++|+|-++.+.+...++ -..|++..+... .+++ ..+.+.-.+++++.+.|...
T Consensus 703 ~peflnRid~ii~F~pL~~~~-l~~Iv~~~l~~l------------------~~rl---~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 703 RPEFLNRLDEIIVFRQLTKND-VWEIAEIMLKNL------------------FKRL---NEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred CHHHhccCCeEEEeCCCCHHH-HHHHHHHHHHHH------------------HHHH---HHCCcEEEECHHHHHHHHHhc
Confidence 899999999888888777443 234443333321 1111 22235567899999988875
Q ss_pred HHHHHHHHhhhhcccCCCCCccCChhHHHHHHH
Q 004862 580 YVQIRKDMRRQANETGEAAPIPITVRQLEAIVR 612 (726)
Q Consensus 580 y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lir 612 (726)
| +-....|.|.++++
T Consensus 761 ~------------------~~~~GAR~l~r~i~ 775 (821)
T CHL00095 761 Y------------------NPLYGARPLRRAIM 775 (821)
T ss_pred C------------------CCCCChhhHHHHHH
Confidence 1 22356788888775
No 110
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.20 E-value=4.1e-10 Score=134.33 Aligned_cols=240 Identities=15% Similarity=0.108 Sum_probs=140.4
Q ss_pred hHHHHHHhhcCCccCchhHHHHHHHHHhC---CCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC---cEEe
Q 004862 324 AYKTVCSKIAPSIFGHDDVKKAVSCLLFG---GSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI---AVYT 397 (726)
Q Consensus 324 ~~~~l~~si~p~I~G~~~~k~aill~L~~---~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~---~~~~ 397 (726)
....|...+--.|+||+.+.+++.-++.. |.. +. .+.-..+||+||||||||.+|++++..+-. .+..
T Consensus 556 ~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~----~~--~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~ 629 (852)
T TIGR03345 556 AVLSLPDRLAERVIGQDHALEAIAERIRTARAGLE----DP--RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLIT 629 (852)
T ss_pred HHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCC----CC--CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEE
Confidence 44567788999999999998888766642 211 00 112235899999999999999999887632 1111
Q ss_pred CCCCCCc--ccccceeeecCCCchhhh-ccCce----eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEE
Q 004862 398 SGKGSSA--AGLTASVIRDGSSREFYL-EGGAM----VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTV 470 (726)
Q Consensus 398 ~g~~~~~--~gl~~~~~~~~~~~~~~~-~~G~l----~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~ 470 (726)
.. .+.. ..-.......+ .|...+ +.|.+ .....+|++||||++++++.++.|+++|++|.++-. .|....
T Consensus 630 ~d-mse~~~~~~~~~l~g~~-~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~-~Gr~vd 706 (852)
T TIGR03345 630 IN-MSEFQEAHTVSRLKGSP-PGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-EGREID 706 (852)
T ss_pred Ee-HHHhhhhhhhccccCCC-CCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecC-CCcEEe
Confidence 00 0000 00000000000 011111 22322 234568999999999999999999999999998743 455555
Q ss_pred eeCceEEEEecCCCCCcCCC-----c-----cchh------hhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHh
Q 004862 471 LNSRTSVLAAANPPSGRYDD-----L-----KSAQ------DNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIH 534 (726)
Q Consensus 471 l~~~~~iiaa~Np~~g~~~~-----~-----~~~~------~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~ 534 (726)
+. ++.||.|+|-..+.|.. . .... -...|+|+|++|+| ++.+.+...++ -..|....+...
T Consensus 707 ~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~-l~~Iv~~~L~~l 783 (852)
T TIGR03345 707 FK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDV-LAAIVRLKLDRI 783 (852)
T ss_pred cc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHH-HHHHHHHHHHHH
Confidence 54 68999999973322211 0 0001 12348899999998 55566554322 233333332211
Q ss_pred hhcccccccccccCCHHHHHHHHHHhHc-cCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHH
Q 004862 535 ASADAVSADSKVSKEENWLKRYIQYCRL-ECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRL 613 (726)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~L~~yi~~a~~-~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirl 613 (726)
.++ +..+ .+.-.+++++.++|....- +-....|.|.++|+.
T Consensus 784 ------------------~~r---l~~~~gi~l~i~d~a~~~La~~g~-----------------~~~~GAR~L~r~Ie~ 825 (852)
T TIGR03345 784 ------------------ARR---LKENHGAELVYSEALVEHIVARCT-----------------EVESGARNIDAILNQ 825 (852)
T ss_pred ------------------HHH---HHHhcCceEEECHHHHHHHHHHcC-----------------CCCCChHHHHHHHHH
Confidence 111 1111 2444689999999988621 123467888888864
No 111
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.20 E-value=7.6e-11 Score=129.61 Aligned_cols=192 Identities=19% Similarity=0.196 Sum_probs=109.9
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccccceeeecCCCchhhhccCceeec---CCCeEEecccCc
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASVIRDGSSREFYLEGGAMVLA---DGGVVCIDEFDK 442 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la---~~gvl~iDEi~~ 442 (726)
..++||+||||||||++|++++..+...++. .+. .+...... .+... ....+..| ...|+||||||.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s-----eL~~k~~G---e~~~~-vr~lF~~A~~~~P~ILfIDEID~ 287 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS-----ELIQKYLG---DGPKL-VRELFRVAEENAPSIVFIDEIDA 287 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc-----hhhhhhcc---hHHHH-HHHHHHHHHhCCCcEEeHHHHHH
Confidence 3579999999999999999999987655432 110 11111000 00000 00111111 346999999987
Q ss_pred CCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccC
Q 004862 443 MRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFD 509 (726)
Q Consensus 443 ~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFd 509 (726)
+.. +.+..+.+.+.+-. |. .-..++.||+|||.+. .+++++++ |||
T Consensus 288 l~~kR~~~~sgg~~e~qr~ll~LL~~Ld------g~--~~~~~V~VI~ATNr~d-------------~LDpaLlRpGRfd 346 (438)
T PTZ00361 288 IGTKRYDATSGGEKEIQRTMLELLNQLD------GF--DSRGDVKVIMATNRIE-------------SLDPALIRPGRID 346 (438)
T ss_pred HhccCCCCCCcccHHHHHHHHHHHHHHh------hh--cccCCeEEEEecCChH-------------HhhHHhccCCeeE
Confidence 632 22344455443210 00 0123578999999531 26777875 999
Q ss_pred eeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 004862 510 LIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRR 589 (726)
Q Consensus 510 li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~ 589 (726)
..+.++.+.... +..|+..+..... +.+.+. . +.+...
T Consensus 347 ~~I~~~~Pd~~~-----R~~Il~~~~~k~~------------------------l~~dvd--l-~~la~~---------- 384 (438)
T PTZ00361 347 RKIEFPNPDEKT-----KRRIFEIHTSKMT------------------------LAEDVD--L-EEFIMA---------- 384 (438)
T ss_pred EEEEeCCCCHHH-----HHHHHHHHHhcCC------------------------CCcCcC--H-HHHHHh----------
Confidence 888776544222 3344443322111 111111 0 111111
Q ss_pred hhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 004862 590 QANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFT 639 (726)
Q Consensus 590 ~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 639 (726)
.-.+|.+++.++++.|...|.-+.+..|+.+|+..|+.-+.
T Consensus 385 ---------t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 385 ---------KDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVL 425 (438)
T ss_pred ---------cCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHH
Confidence 23478889999999888888777889999999999997654
No 112
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=5.1e-10 Score=126.11 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=125.6
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe----CCCCC--------
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT----SGKGS-------- 402 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g~~~-------- 402 (726)
+|+||+.+++.+.-++..+ |..+.+||+||||+|||++|+.+++.+.-.... +|.-.
T Consensus 17 diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 5789999999988877665 222348899999999999999998865321100 11000
Q ss_pred Cccc---ccceeeecCCCchh--hhc-cC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 403 SAAG---LTASVIRDGSSREF--YLE-GG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 403 ~~~g---l~~~~~~~~~~~~~--~~~-~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
+..+ +.++... . ..+. .++ .. .-..++..|++|||+++|+.+.++.|+..||+. |..+
T Consensus 86 ~~~dlieidaas~~-g-vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v 150 (546)
T PRK14957 86 SFIDLIEIDAASRT-G-VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYV 150 (546)
T ss_pred CCCceEEeeccccc-C-HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-------------CCCc
Confidence 0001 1110000 0 0000 000 00 002345569999999999999999999999963 2234
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
.+|.+|+- ...+.++++||. .++.+.... .+.+.+
T Consensus 151 ~fIL~Ttd-------------~~kil~tI~SRc-~~~~f~~Ls-------------------------------~~eI~~ 185 (546)
T PRK14957 151 KFILATTD-------------YHKIPVTILSRC-IQLHLKHIS-------------------------------QADIKD 185 (546)
T ss_pred eEEEEECC-------------hhhhhhhHHHhe-eeEEeCCCC-------------------------------HHHHHH
Confidence 44544441 122567799999 555554443 333333
Q ss_pred HHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 556 YIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 556 yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
++...-..-...+++++.+.|..+ ..+++|.+.+++..+.+.+. +.|+.+++.+++
T Consensus 186 ~L~~il~~egi~~e~~Al~~Ia~~--------------------s~GdlR~alnlLek~i~~~~----~~It~~~V~~~l 241 (546)
T PRK14957 186 QLKIILAKENINSDEQSLEYIAYH--------------------AKGSLRDALSLLDQAISFCG----GELKQAQIKQML 241 (546)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhcc----CCCCHHHHHHHH
Confidence 333321112346889999998876 34789999999976665432 579999998865
Q ss_pred HH
Q 004862 636 RL 637 (726)
Q Consensus 636 ~l 637 (726)
..
T Consensus 242 ~~ 243 (546)
T PRK14957 242 GI 243 (546)
T ss_pred cc
Confidence 43
No 113
>CHL00176 ftsH cell division protein; Validated
Probab=99.19 E-value=1.8e-10 Score=132.59 Aligned_cols=221 Identities=22% Similarity=0.291 Sum_probs=116.6
Q ss_pred CCccCchhHHHHHHHHH--hCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC-CCCC--Cccccc
Q 004862 334 PSIFGHDDVKKAVSCLL--FGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS-GKGS--SAAGLT 408 (726)
Q Consensus 334 p~I~G~~~~k~aill~L--~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~-g~~~--~~~gl~ 408 (726)
.+|.|.+.+|+.+.-.+ ......-..-| .+...++||+||||||||++|++++..+...++.. +... ...|..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g--~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~ 260 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVG--AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVG 260 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhh
Confidence 45788888887653222 11111000001 12235799999999999999999998776554421 1000 000100
Q ss_pred ceeeecCCCchhhhccCceeecCCCeEEecccCcCCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 409 ASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 409 ~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
....+ ..|. .+ ......|+||||||.+.. ..+..|.+.+..-. |. .-+.++.|
T Consensus 261 ~~~vr----~lF~-~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d------g~--~~~~~ViV 324 (638)
T CHL00176 261 AARVR----DLFK-KA---KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD------GF--KGNKGVIV 324 (638)
T ss_pred HHHHH----HHHH-HH---hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc------cc--cCCCCeeE
Confidence 00000 0000 00 012245999999998742 22334444443210 00 01346789
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
|||||.+. .+.++|++ |||..+.+..+..++ +..+++.|....
T Consensus 325 IaaTN~~~-------------~LD~ALlRpGRFd~~I~v~lPd~~~-----R~~IL~~~l~~~----------------- 369 (638)
T CHL00176 325 IAATNRVD-------------ILDAALLRPGRFDRQITVSLPDREG-----RLDILKVHARNK----------------- 369 (638)
T ss_pred EEecCchH-------------hhhhhhhccccCceEEEECCCCHHH-----HHHHHHHHHhhc-----------------
Confidence 99999641 25677775 899888775544222 333444332210
Q ss_pred HHHHhHccCCCCCC-HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc-CChhHHHHHHHHHHHHHhhhCCCcccHHHHHH
Q 004862 556 YIQYCRLECHPRLS-ESASAKLRDQYVQIRKDMRRQANETGEAAPIP-ITVRQLEAIVRLSEALAKMKLSHVATENEVNE 633 (726)
Q Consensus 556 yi~~a~~~~~p~ls-~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~-~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ 633 (726)
.+. +.....+.. .++ .|.++|.++++.|...|.-+....|+.+|+.+
T Consensus 370 -----------~~~~d~~l~~lA~--------------------~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~ 418 (638)
T CHL00176 370 -----------KLSPDVSLELIAR--------------------RTPGFSGADLANLLNEAAILTARRKKATITMKEIDT 418 (638)
T ss_pred -----------ccchhHHHHHHHh--------------------cCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 111 111222221 133 58888888888776666566677788888888
Q ss_pred HHHHH
Q 004862 634 AVRLF 638 (726)
Q Consensus 634 ai~l~ 638 (726)
|+.-+
T Consensus 419 Ai~rv 423 (638)
T CHL00176 419 AIDRV 423 (638)
T ss_pred HHHHH
Confidence 87543
No 114
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.18 E-value=2.7e-10 Score=129.35 Aligned_cols=118 Identities=30% Similarity=0.373 Sum_probs=68.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCc----ccccceeeecCCCchhhhccCceeecCCCeEEecccCcC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSA----AGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~----~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~ 443 (726)
.++||+||||||||+++++++..+...++... .+.. .|.+....+ ..|. . + .....+|+||||||.+
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~-~~~~~~~~~g~~~~~l~----~~f~-~--a-~~~~p~Il~iDEid~l 159 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS-GSDFVEMFVGVGASRVR----DLFE-Q--A-KKNAPCIIFIDEIDAV 159 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeecc-HHHHHHHHhcccHHHHH----HHHH-H--H-HhcCCCEEEEechhhh
Confidence 46999999999999999999988766544210 0000 010000000 0000 0 0 1123479999999997
Q ss_pred CHHH--------------HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--c
Q 004862 444 RPED--------------RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--R 507 (726)
Q Consensus 444 ~~~~--------------~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--R 507 (726)
.... .+.|+..|+.- .-...+.||||||++. .+.++|++ |
T Consensus 160 ~~~r~~~~~~~~~~~~~~~~~lL~~~d~~-----------~~~~~v~vI~aTn~~~-------------~ld~al~r~gR 215 (495)
T TIGR01241 160 GRQRGAGLGGGNDEREQTLNQLLVEMDGF-----------GTNTGVIVIAATNRPD-------------VLDPALLRPGR 215 (495)
T ss_pred hhccccCcCCccHHHHHHHHHHHhhhccc-----------cCCCCeEEEEecCChh-------------hcCHHHhcCCc
Confidence 5422 12233333210 0123478999999652 37788886 9
Q ss_pred cCeeeEeccCC
Q 004862 508 FDLIFIVKDIR 518 (726)
Q Consensus 508 Fdli~~l~d~~ 518 (726)
||..+.++.+.
T Consensus 216 fd~~i~i~~Pd 226 (495)
T TIGR01241 216 FDRQVVVDLPD 226 (495)
T ss_pred ceEEEEcCCCC
Confidence 99888776544
No 115
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.18 E-value=7e-10 Score=114.04 Aligned_cols=145 Identities=21% Similarity=0.224 Sum_probs=101.6
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCee
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLI 511 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli 511 (726)
.|||||||.+.|+-+.-+.|..+||+--- ..||.|||.-.-+-.- -....-..+|..||+|. ||
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~a--------------PIii~AtNRG~~kiRG-Td~~sPhGIP~DlLDRl-lI 355 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELA--------------PIIILATNRGMTKIRG-TDIESPHGIPLDLLDRL-LI 355 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccC--------------cEEEEEcCCceeeecc-cCCcCCCCCCHhhhhhe-eE
Confidence 48999999999999999999999996431 2467778861110000 01233355899999997 66
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
+...+.+.++ .+.|+..+.. . -...++++|.++|...
T Consensus 356 I~t~py~~~E-----ireIi~iRa~-------------------------e-e~i~l~~~Ale~L~~i------------ 392 (450)
T COG1224 356 ISTRPYSREE-----IREIIRIRAK-------------------------E-EDIELSDDALEYLTDI------------ 392 (450)
T ss_pred EecCCCCHHH-----HHHHHHHhhh-------------------------h-hccccCHHHHHHHHhh------------
Confidence 6555544322 1222222211 1 2235999999999876
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhh
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVST 642 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~ 642 (726)
...-|.|-..+|+.-|.-.|+.+++..|..+||++|-.+|....
T Consensus 393 -------g~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 393 -------GEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred -------chhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhHH
Confidence 23467899999999999999999999999999999999997543
No 116
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.2e-09 Score=121.49 Aligned_cols=210 Identities=13% Similarity=0.153 Sum_probs=127.1
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC----cEEeCCC---------
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI----AVYTSGK--------- 400 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~----~~~~~g~--------- 400 (726)
.+++||+.+++.+.-++..| |-.+++||+||||+|||++|+.+++.+.- ...-+|.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 36789999999887666655 22357999999999999999999875311 0000110
Q ss_pred --CCCcccccceeeecCCCchhh--hc-cCce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 401 --GSSAAGLTASVIRDGSSREFY--LE-GGAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 401 --~~~~~gl~~~~~~~~~~~~~~--~~-~G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
......+.++.... ..+.. .+ .... ..+...|++|||++.|+.+.+++|+..||+- +..
T Consensus 82 ~~~~Dv~eidaas~~~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p~~ 146 (491)
T PRK14964 82 SNHPDVIEIDAASNTS--VDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-------------APH 146 (491)
T ss_pred cCCCCEEEEecccCCC--HHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-------------CCC
Confidence 10111111110000 00000 00 0000 2355679999999999999999999999962 223
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
+.+|.+|+.+ ..+++++.+|+- .+.+.... .+.+.
T Consensus 147 v~fIlatte~-------------~Kl~~tI~SRc~-~~~f~~l~-------------------------------~~el~ 181 (491)
T PRK14964 147 VKFILATTEV-------------KKIPVTIISRCQ-RFDLQKIP-------------------------------TDKLV 181 (491)
T ss_pred eEEEEEeCCh-------------HHHHHHHHHhhe-eeeccccc-------------------------------HHHHH
Confidence 4555555421 127788999984 34343332 22333
Q ss_pred HHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 555 RYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 555 ~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
+++...-..-...+++++.+.|.+. ..+++|.+.+++..+.+++. ..|+.++|.+.
T Consensus 182 ~~L~~ia~~Egi~i~~eAL~lIa~~--------------------s~GslR~alslLdqli~y~~----~~It~e~V~~l 237 (491)
T PRK14964 182 EHLVDIAKKENIEHDEESLKLIAEN--------------------SSGSMRNALFLLEQAAIYSN----NKISEKSVRDL 237 (491)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHH
Confidence 3333221112346899999998876 34789999999877665543 57999999987
Q ss_pred HHHH
Q 004862 635 VRLF 638 (726)
Q Consensus 635 i~l~ 638 (726)
+.+.
T Consensus 238 lg~~ 241 (491)
T PRK14964 238 LGCV 241 (491)
T ss_pred HccC
Confidence 6443
No 117
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=2.5e-09 Score=122.26 Aligned_cols=208 Identities=18% Similarity=0.160 Sum_probs=125.5
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcce-EEEECCCchhHHHHHHHHHHhCCCcEEe----CCC-------
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVN-VLLLGDPSTAKSQFLKFVEKTAPIAVYT----SGK------- 400 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~-vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g~------- 400 (726)
+.+|+||+.+++.|.-++..|. - .| +||+|++|+|||++|+.+++.+.-.... ||.
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-----------l-~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-----------L-HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----------C-CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 3367899999999888887661 1 45 5899999999999999998776432110 110
Q ss_pred ----CCCcccccceeeecCCCchhh-h-ccCce--eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 401 ----GSSAAGLTASVIRDGSSREFY-L-EGGAM--VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 401 ----~~~~~gl~~~~~~~~~~~~~~-~-~~G~l--~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
......+.++. +.. ..+.. + +.-.. ......|++|||+++|+...+++|+..||+- +
T Consensus 83 ~~g~~~D~ieidaas-~~~-VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p 147 (647)
T PRK07994 83 EQGRFVDLIEIDAAS-RTK-VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------P 147 (647)
T ss_pred HcCCCCCceeecccc-cCC-HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------C
Confidence 00000011110 000 00000 0 00000 1123359999999999999999999999962 2
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
..+.+|.+|+.+ ..+.++++||+ ..|.+...+ .+.
T Consensus 148 ~~v~FIL~Tt~~-------------~kLl~TI~SRC-~~~~f~~Ls-------------------------------~~e 182 (647)
T PRK07994 148 EHVKFLLATTDP-------------QKLPVTILSRC-LQFHLKALD-------------------------------VEQ 182 (647)
T ss_pred CCeEEEEecCCc-------------cccchHHHhhh-eEeeCCCCC-------------------------------HHH
Confidence 344555555421 13788999997 666565444 333
Q ss_pred HHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 004862 553 LKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN 632 (726)
Q Consensus 553 L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~ 632 (726)
+..|+.+.-..-...+++++...|..+ ..+++|...+++..+.+. ....|+.+++.
T Consensus 183 i~~~L~~il~~e~i~~e~~aL~~Ia~~--------------------s~Gs~R~Al~lldqaia~----~~~~it~~~v~ 238 (647)
T PRK07994 183 IRQQLEHILQAEQIPFEPRALQLLARA--------------------ADGSMRDALSLTDQAIAS----GNGQVTTDDVS 238 (647)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh----cCCCcCHHHHH
Confidence 444443321111335788888888776 348899999998755443 23468888888
Q ss_pred HHHH
Q 004862 633 EAVR 636 (726)
Q Consensus 633 ~ai~ 636 (726)
..+.
T Consensus 239 ~~lg 242 (647)
T PRK07994 239 AMLG 242 (647)
T ss_pred HHHc
Confidence 7654
No 118
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.16 E-value=5.4e-10 Score=116.22 Aligned_cols=210 Identities=16% Similarity=0.174 Sum_probs=116.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeec---CCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLA---DGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la---~~gvl~iDEi~~~~ 444 (726)
.|+||+||+|||||++++.+-...+...|........+..++.....-......-..|...-. ..-|+|||+++...
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S-
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCC
Confidence 799999999999999998876655554332100000000111111100000011111221111 22389999998875
Q ss_pred HH------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 445 PE------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 445 ~~------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
++ ..+.|.++|+.|.+.-.+......+ .++.++||+||..|+. .++++|++.|.++. .+.+
T Consensus 114 ~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr~----------~is~R~~r~f~i~~--~~~p 180 (272)
T PF12775_consen 114 PDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGRN----------PISPRFLRHFNILN--IPYP 180 (272)
T ss_dssp --TTS--HHHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT------------SHHHHHHTTEEEEE------
T ss_pred CCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCCC----------CCChHHhhheEEEE--ecCC
Confidence 44 3589999999988754333233333 4689999999976653 38899999998655 3344
Q ss_pred ChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 004862 519 MYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAA 598 (726)
Q Consensus 519 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~ 598 (726)
+.+.-..|...++..+.....- .. .+. .+.+.......+.|..++..-.-. -.+.
T Consensus 181 ~~~sl~~If~~il~~~l~~~~f-------------------~~-~v~-~~~~~lv~ati~ly~~i~~~~~pt----p~k~ 235 (272)
T PF12775_consen 181 SDESLNTIFSSILQSHLKNGGF-------------------PE-DVQ-KLADKLVQATIELYQKIRQQFLPT----PSKP 235 (272)
T ss_dssp TCCHHHHHHHHHHHHHTCHTTS-------------------SG-GGC-CCHHHHHHHHHHHHHHHHHHS-TT----TTCT
T ss_pred ChHHHHHHHHHHHhhhcccCCC-------------------Ch-HHH-HHHHHHHHHHHHHHHhhhcccCCC----Cccc
Confidence 4444566666666655432110 00 011 245566667777787777654321 1235
Q ss_pred CccCChhHHHHHHHHHH
Q 004862 599 PIPITVRQLEAIVRLSE 615 (726)
Q Consensus 599 ~~~~t~R~L~~lirla~ 615 (726)
.+-+|+|.+.++++-..
T Consensus 236 HY~FnlRDlsrv~qGil 252 (272)
T PF12775_consen 236 HYTFNLRDLSRVFQGIL 252 (272)
T ss_dssp TTTSHHHHHHHHHHHHH
T ss_pred eeeccHHHHHHHHHHHH
Confidence 77889999999987543
No 119
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=1.5e-09 Score=122.37 Aligned_cols=214 Identities=14% Similarity=0.129 Sum_probs=126.2
Q ss_pred HHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC-c---EEeCCCCC-
Q 004862 328 VCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI-A---VYTSGKGS- 402 (726)
Q Consensus 328 l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~-~---~~~~g~~~- 402 (726)
....-+.+|+||+.+++.+.-++..+ +..+.+||+||||+|||++|+.+++.+.- . ...+|.-.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 33334446789999999888877665 22255999999999999999999887531 1 00111100
Q ss_pred ----------CcccccceeeecCCCchhh--hc-cC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceE
Q 004862 403 ----------SAAGLTASVIRDGSSREFY--LE-GG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGIT 468 (726)
Q Consensus 403 ----------~~~gl~~~~~~~~~~~~~~--~~-~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~ 468 (726)
....+.++... ..++.. .. .. .-..++.+|++|||++.|..+.+++|+..||+-
T Consensus 79 Cr~i~~~~h~DiieIdaas~i--gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP---------- 146 (605)
T PRK05896 79 CESINTNQSVDIVELDAASNN--GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP---------- 146 (605)
T ss_pred HHHHHcCCCCceEEecccccc--CHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC----------
Confidence 00001110000 000000 00 00 002346789999999999999999999999963
Q ss_pred EEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccC
Q 004862 469 TVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSK 548 (726)
Q Consensus 469 ~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 548 (726)
+..+.+|.+|+.+ ..+.+++.+|+. ++.+...
T Consensus 147 ---p~~tvfIL~Tt~~-------------~KLl~TI~SRcq-~ieF~~L------------------------------- 178 (605)
T PRK05896 147 ---PKHVVFIFATTEF-------------QKIPLTIISRCQ-RYNFKKL------------------------------- 178 (605)
T ss_pred ---CCcEEEEEECCCh-------------HhhhHHHHhhhh-hcccCCC-------------------------------
Confidence 2234455555421 236788999986 3434333
Q ss_pred CHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccH
Q 004862 549 EENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATE 628 (726)
Q Consensus 549 ~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~ 628 (726)
+.+.+..++...-..-...+++++.+.|... ..+++|.+.+++....+.+ + ..|+.
T Consensus 179 s~~eL~~~L~~il~kegi~Is~eal~~La~l--------------------S~GdlR~AlnlLekL~~y~---~-~~It~ 234 (605)
T PRK05896 179 NNSELQELLKSIAKKEKIKIEDNAIDKIADL--------------------ADGSLRDGLSILDQLSTFK---N-SEIDI 234 (605)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCcHHHHHHHHHHHHhhc---C-CCCCH
Confidence 3333444433321112335888998888775 3478898888887644433 2 34999
Q ss_pred HHHHHHHH
Q 004862 629 NEVNEAVR 636 (726)
Q Consensus 629 ~Dv~~ai~ 636 (726)
+++.+.+.
T Consensus 235 e~V~ellg 242 (605)
T PRK05896 235 EDINKTFG 242 (605)
T ss_pred HHHHHHhc
Confidence 98887654
No 120
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.6e-09 Score=123.61 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=123.5
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE--E-------eCC------
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV--Y-------TSG------ 399 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~--~-------~~g------ 399 (726)
+|+||+.+++.|.-++..+ |-.+-+||+|++|+|||++|+.+++.+.-.. . -||
T Consensus 17 dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~ 85 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACR 85 (618)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHH
Confidence 5789999999988888776 2223359999999999999999987653100 0 000
Q ss_pred -----CCCCcccccceeeecC-CCchh----hhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEE
Q 004862 400 -----KGSSAAGLTASVIRDG-SSREF----YLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITT 469 (726)
Q Consensus 400 -----~~~~~~gl~~~~~~~~-~~~~~----~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~ 469 (726)
.......+.++..... ...+. .+.+ ..+...|++|||++.|+.+.++.|+..||+-
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p---~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP----------- 151 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKP---VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP----------- 151 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCc---ccCCceEEEEEChhhCCHHHHHHHHHhcccC-----------
Confidence 0000111111100000 00000 0011 1223459999999999999999999999862
Q ss_pred EeeCceEEEEec-CCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccC
Q 004862 470 VLNSRTSVLAAA-NPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSK 548 (726)
Q Consensus 470 ~l~~~~~iiaa~-Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 548 (726)
+..+.+|.+| +|. .+..+++||+ ++|.+...+
T Consensus 152 --P~~~~fIL~Ttd~~--------------kil~TIlSRc-~~~~f~~Ls------------------------------ 184 (618)
T PRK14951 152 --PEYLKFVLATTDPQ--------------KVPVTVLSRC-LQFNLRPMA------------------------------ 184 (618)
T ss_pred --CCCeEEEEEECCch--------------hhhHHHHHhc-eeeecCCCC------------------------------
Confidence 2334455444 431 2567799998 566555444
Q ss_pred CHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccH
Q 004862 549 EENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATE 628 (726)
Q Consensus 549 ~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~ 628 (726)
.+.+.+++...-..-.-.+++++.+.|.++ ..+++|.+.+++..+.+. +...|+.
T Consensus 185 -~eei~~~L~~i~~~egi~ie~~AL~~La~~--------------------s~GslR~al~lLdq~ia~----~~~~It~ 239 (618)
T PRK14951 185 -PETVLEHLTQVLAAENVPAEPQALRLLARA--------------------ARGSMRDALSLTDQAIAF----GSGQLQE 239 (618)
T ss_pred -HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh----cCCCcCH
Confidence 222333332211112335788999888876 348899999998655544 2457999
Q ss_pred HHHHHHHHH
Q 004862 629 NEVNEAVRL 637 (726)
Q Consensus 629 ~Dv~~ai~l 637 (726)
++|.+.+..
T Consensus 240 ~~V~~~Lg~ 248 (618)
T PRK14951 240 AAVRQMLGS 248 (618)
T ss_pred HHHHHHHcC
Confidence 999887643
No 121
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.16 E-value=3.8e-10 Score=121.10 Aligned_cols=143 Identities=18% Similarity=0.273 Sum_probs=91.4
Q ss_pred cCCCeEEecccCcCCH------------HHHHHHHHHHhcceEeeeccceEEEee-CceEEEEecCCCCCcCCCccchhh
Q 004862 430 ADGGVVCIDEFDKMRP------------EDRVAIHEAMEQQTISIAKAGITTVLN-SRTSVLAAANPPSGRYDDLKSAQD 496 (726)
Q Consensus 430 a~~gvl~iDEi~~~~~------------~~~~~L~~~me~~~i~i~~~g~~~~l~-~~~~iiaa~Np~~g~~~~~~~~~~ 496 (726)
+..||+||||||++.. .+|..|+..||.-++++ +.| ..+ .++.+||+. -|...+
T Consensus 248 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~---~i~T~~ILFI~~G-----AF~~~k---- 314 (443)
T PRK05201 248 EQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYG---MVKTDHILFIASG-----AFHVSK---- 314 (443)
T ss_pred HcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cce---eEECCceeEEecC-----CcCCCC----
Confidence 3789999999999852 36889999999877765 322 222 235555543 343222
Q ss_pred hccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhH-ccCCCCCCHHHHHH
Q 004862 497 NIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCR-LECHPRLSESASAK 575 (726)
Q Consensus 497 ~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~-~~~~p~ls~ea~~~ 575 (726)
...|-|.|.-||.+++.+.+...++ -.+||. . -....+++|....+ ..+.-.|+++|.+.
T Consensus 315 p~DlIPEl~GR~Pi~v~L~~L~~~d-----L~~ILt---e-----------P~nsLikQy~~Lf~~egv~L~Ftd~Al~~ 375 (443)
T PRK05201 315 PSDLIPELQGRFPIRVELDALTEED-----FVRILT---E-----------PKASLIKQYQALLATEGVTLEFTDDAIRR 375 (443)
T ss_pred hhhccHHHhCccceEEECCCCCHHH-----HHHHhc---C-----------ChhHHHHHHHHHHhhcCcEEEEcHHHHHH
Confidence 2347799999999999998776322 112221 1 11346778866543 33555799999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHH
Q 004862 576 LRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEA 616 (726)
Q Consensus 576 l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a 616 (726)
|.+...+.... .-.+-.|.|.+++.....
T Consensus 376 IA~~A~~~N~~------------~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 376 IAEIAYQVNEK------------TENIGARRLHTVMEKLLE 404 (443)
T ss_pred HHHHHHHhccc------------ccccchhhHHHHHHHHHH
Confidence 99886543211 123667989888875443
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=3.7e-09 Score=118.55 Aligned_cols=207 Identities=18% Similarity=0.174 Sum_probs=126.2
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcce-EEEECCCchhHHHHHHHHHHhCCCcE----EeCCC--------
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVN-VLLLGDPSTAKSQFLKFVEKTAPIAV----YTSGK-------- 400 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~-vLL~G~pGtGKt~la~~i~~~~~~~~----~~~g~-------- 400 (726)
-+|+||+.+++.+.-++-.|.- .| .||+||||+|||++|+++++.+.-.. ..+|.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl------------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL------------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC------------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 3689999999999888876621 34 48999999999999999987652110 00000
Q ss_pred ---CCCcccccceeeecCCCchhh--hccC--ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 401 ---GSSAAGLTASVIRDGSSREFY--LEGG--AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 401 ---~~~~~gl~~~~~~~~~~~~~~--~~~G--~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
......+.++..+. ..... .+.. .-..+...|++|||+++|+.+.+++|+..||+- |.
T Consensus 82 ~~~h~dv~eldaas~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~ 146 (535)
T PRK08451 82 ENRHIDIIEMDAASNRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-------------PS 146 (535)
T ss_pred hcCCCeEEEeccccccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-------------CC
Confidence 00000011100000 00000 0000 002345579999999999999999999999962 33
Q ss_pred ceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHH
Q 004862 474 RTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWL 553 (726)
Q Consensus 474 ~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L 553 (726)
.+.+|.+|+.+ ..+.+++.||.. .|.+.+.+ .+.+
T Consensus 147 ~t~FIL~ttd~-------------~kL~~tI~SRc~-~~~F~~Ls-------------------------------~~ei 181 (535)
T PRK08451 147 YVKFILATTDP-------------LKLPATILSRTQ-HFRFKQIP-------------------------------QNSI 181 (535)
T ss_pred ceEEEEEECCh-------------hhCchHHHhhce-eEEcCCCC-------------------------------HHHH
Confidence 45555555521 237789999974 55554443 2333
Q ss_pred HHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHH
Q 004862 554 KRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNE 633 (726)
Q Consensus 554 ~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ 633 (726)
.+|+...-..-...+++++.+.|.+. ..+++|.+.+++..+.+.+ ...|+.++|.+
T Consensus 182 ~~~L~~Il~~EGi~i~~~Al~~Ia~~--------------------s~GdlR~alnlLdqai~~~----~~~It~~~V~~ 237 (535)
T PRK08451 182 ISHLKTILEKEGVSYEPEALEILARS--------------------GNGSLRDTLTLLDQAIIYC----KNAITESKVAD 237 (535)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCcHHHHHHHHHHHHHhc----CCCCCHHHHHH
Confidence 33333211112335788999888876 3478999999997766554 35688888887
Q ss_pred HHH
Q 004862 634 AVR 636 (726)
Q Consensus 634 ai~ 636 (726)
.+.
T Consensus 238 ~lg 240 (535)
T PRK08451 238 MLG 240 (535)
T ss_pred HhC
Confidence 654
No 123
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.14 E-value=9.3e-10 Score=118.12 Aligned_cols=144 Identities=17% Similarity=0.292 Sum_probs=91.6
Q ss_pred cCCCeEEecccCcCCH------------HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhh
Q 004862 430 ADGGVVCIDEFDKMRP------------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDN 497 (726)
Q Consensus 430 a~~gvl~iDEi~~~~~------------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~ 497 (726)
+..||+||||||++.. .+|..|+..||-.++.. +.|... -.++.+||+. -|...+ .
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~--T~~ILFI~~G-----AF~~~k----p 313 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVK--TDHILFIAAG-----AFQLAK----P 313 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEE--CCceeEEecC-----CcCCCC----h
Confidence 5789999999999853 26889999999777664 333211 1235555543 343221 2
Q ss_pred ccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHc-cCCCCCCHHHHHHH
Q 004862 498 IDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRL-ECHPRLSESASAKL 576 (726)
Q Consensus 498 ~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~-~~~p~ls~ea~~~l 576 (726)
..|-|.|.-||.+++.+.+...++ -.+||. .+ ...++++|....+. .+.-.|+++|.+.|
T Consensus 314 ~DlIPEl~GR~Pi~v~L~~L~~ed-----L~rILt---eP-----------~nsLikQy~~Lf~~egv~L~Ftd~Al~~I 374 (441)
T TIGR00390 314 SDLIPELQGRFPIRVELQALTTDD-----FERILT---EP-----------KNSLIKQYKALMKTEGVNIEFSDEAIKRI 374 (441)
T ss_pred hhccHHHhCccceEEECCCCCHHH-----HHHHhc---CC-----------hhHHHHHHHHHHhhcCcEEEEeHHHHHHH
Confidence 237899999999999998776322 122221 11 12467788665443 24457899999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHH
Q 004862 577 RDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEA 616 (726)
Q Consensus 577 ~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a 616 (726)
.+...++... .-.+-+|.|.+++.....
T Consensus 375 A~~A~~~N~~------------~~~iGAR~LrtilE~~l~ 402 (441)
T TIGR00390 375 AELAYNVNEK------------TENIGARRLHTVLERLLE 402 (441)
T ss_pred HHHHHHhccc------------ccccchhhHHHHHHHHHH
Confidence 9886544222 123667889888865443
No 124
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=3.8e-09 Score=119.82 Aligned_cols=210 Identities=16% Similarity=0.124 Sum_probs=123.4
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe----CCC----------
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT----SGK---------- 400 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g~---------- 400 (726)
+|+||+.+++.|.-++..+ |-.+++||+||||||||++|+.+++.+.-.... ++.
T Consensus 17 dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQG 85 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcC
Confidence 5779999998888877665 222678999999999999999998876421100 000
Q ss_pred -CCCcccccceeeecCCC-chhhhccCc-eeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 401 -GSSAAGLTASVIRDGSS-REFYLEGGA-MVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 401 -~~~~~gl~~~~~~~~~~-~~~~~~~G~-l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
......+.++....... ....-.... -..+...|++|||++.|+.+.++.|+..||+-. ..+.+
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-------------~~~if 152 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-------------ARVTF 152 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-------------CCEEE
Confidence 00000010000000000 000000000 012345699999999999999999999998621 23555
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHH
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYI 557 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi 557 (726)
|.+||.+ ..+...+.+|+. ++.+.... .+.+.+++
T Consensus 153 ILaTt~~-------------~kll~TI~SRcq-~i~F~pLs-------------------------------~~eL~~~L 187 (624)
T PRK14959 153 VLATTEP-------------HKFPVTIVSRCQ-HFTFTRLS-------------------------------EAGLEAHL 187 (624)
T ss_pred EEecCCh-------------hhhhHHHHhhhh-ccccCCCC-------------------------------HHHHHHHH
Confidence 5555521 125567889985 33444333 33333333
Q ss_pred HHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 558 QYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 558 ~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
...-..-...+++++.+.|..+ ..+++|.+.+++..+. + ...+.|+.++|..++.+
T Consensus 188 ~~il~~egi~id~eal~lIA~~--------------------s~GdlR~Al~lLeqll--~--~g~~~It~d~V~~~lg~ 243 (624)
T PRK14959 188 TKVLGREGVDYDPAAVRLIARR--------------------AAGSVRDSMSLLGQVL--A--LGESRLTIDGARGVLGL 243 (624)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHH--H--hcCCCcCHHHHHHHhCC
Confidence 3211112335889999998886 3478898888886432 2 24568999999877644
No 125
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.6e-09 Score=124.30 Aligned_cols=240 Identities=17% Similarity=0.186 Sum_probs=143.1
Q ss_pred chHHHHHHhhcCCccCchhHHHHHHHHHh----CCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc---E
Q 004862 323 DAYKTVCSKIAPSIFGHDDVKKAVSCLLF----GGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA---V 395 (726)
Q Consensus 323 ~~~~~l~~si~p~I~G~~~~k~aill~L~----~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~---~ 395 (726)
.....+.+.+...|+||+.+..++.-++- |=...+ |.--..||.||+|+|||.||++++..+..+ .
T Consensus 480 ~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~al 552 (786)
T COG0542 480 EKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQAL 552 (786)
T ss_pred HHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccc
Confidence 34556788899999999998877765553 322222 222378999999999999999999877532 1
Q ss_pred EeCCCCCCcc-ccc-ceeeecCCCchhhh-ccCceee----cCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceE
Q 004862 396 YTSGKGSSAA-GLT-ASVIRDGSSREFYL-EGGAMVL----ADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGIT 468 (726)
Q Consensus 396 ~~~g~~~~~~-gl~-~~~~~~~~~~~~~~-~~G~l~l----a~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~ 468 (726)
..-. .|.+. .-+ ...+..| -|-..+ ++|.|.- ..-.|+++|||++..|+..+.|+++|++|+++-.+ |..
T Consensus 553 iR~D-MSEy~EkHsVSrLIGaP-PGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~-Gr~ 629 (786)
T COG0542 553 IRID-MSEYMEKHSVSRLIGAP-PGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ-GRT 629 (786)
T ss_pred eeec-hHHHHHHHHHHHHhCCC-CCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC-CCE
Confidence 1000 00000 000 0001111 011111 2333322 23469999999999999999999999999987543 344
Q ss_pred EEeeCceEEEEecCCCCCc----C-----CCccch------hhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHH
Q 004862 469 TVLNSRTSVLAAANPPSGR----Y-----DDLKSA------QDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKI 533 (726)
Q Consensus 469 ~~l~~~~~iiaa~Np~~g~----~-----~~~~~~------~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~ 533 (726)
..+. ++.||.|+|--... . ...... .-...|+|.++.|+|-++.+.+.... .-..|....+..
T Consensus 630 VdFr-NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~-~l~~Iv~~~L~~ 707 (786)
T COG0542 630 VDFR-NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKE-VLERIVDLQLNR 707 (786)
T ss_pred Eecc-eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHH-HHHHHHHHHHHH
Confidence 4443 68899999962110 1 101111 22345889999999987777666532 223333333322
Q ss_pred hhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHH
Q 004862 534 HASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVR 612 (726)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lir 612 (726)
|.+-+ .++.+.-.+++++.+.|...+. +-....|.|.++|+
T Consensus 708 -------------------l~~~L--~~~~i~l~~s~~a~~~l~~~gy-----------------d~~~GARpL~R~Iq 748 (786)
T COG0542 708 -------------------LAKRL--AERGITLELSDEAKDFLAEKGY-----------------DPEYGARPLRRAIQ 748 (786)
T ss_pred -------------------HHHHH--HhCCceEEECHHHHHHHHHhcc-----------------CCCcCchHHHHHHH
Confidence 22222 2334666799999999887531 22356788888775
No 126
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.2e-09 Score=121.91 Aligned_cols=167 Identities=21% Similarity=0.280 Sum_probs=94.4
Q ss_pred CccCchhHHHHHHHHHhCCCcccCC--CCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccc--ccce
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLP--DGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAG--LTAS 410 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~--~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~g--l~~~ 410 (726)
+|-|.+++|.-|+-.+--. -..+ .|...|....|||+||||||||.+|+++|....-.+. |..| |..-
T Consensus 673 DVGGLeevK~eIldTIqlP--L~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~Fl------SVKGPELLNM 744 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLP--LKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFL------SVKGPELLNM 744 (953)
T ss_pred cccCHHHHHHHHHHHhcCc--ccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEE------eecCHHHHHH
Confidence 3568899999987655321 1111 1223444467999999999999999999987765554 2111 1100
Q ss_pred eeecCCCch-hhhccCceeecCCCeEEecccCcCCHHH-------------HHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 411 VIRDGSSRE-FYLEGGAMVLADGGVVCIDEFDKMRPED-------------RVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 411 ~~~~~~~~~-~~~~~G~l~la~~gvl~iDEi~~~~~~~-------------~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
.+...+... -+++ .-..|..-|+|+||+|.+.|.. -..|+.-|+ |....-...+-
T Consensus 745 YVGqSE~NVR~VFe--rAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~VF 813 (953)
T KOG0736|consen 745 YVGQSEENVREVFE--RARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDVF 813 (953)
T ss_pred HhcchHHHHHHHHH--HhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCceE
Confidence 000000000 0000 0124556799999999987652 233444333 22222345688
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHH
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKI 533 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~ 533 (726)
||+|||.|. + +.++||+ |||=.+.+-...+.+.-..+-+.+.+.
T Consensus 814 ViGATNRPD--------L-----LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk 859 (953)
T KOG0736|consen 814 VIGATNRPD--------L-----LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK 859 (953)
T ss_pred EEecCCCcc--------c-----cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH
Confidence 999999762 1 5566664 899666676666555444444444443
No 127
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=6.6e-09 Score=118.83 Aligned_cols=212 Identities=17% Similarity=0.122 Sum_probs=124.9
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe----CC--------
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT----SG-------- 399 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g-------- 399 (726)
-+-+++||+.+++.+.-++..+ +-.+..||+||+|||||++|+.+++.+.-.... ||
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 3446889999999998888765 112447899999999999999998765311100 11
Q ss_pred ---CCCCcccccceeeecCC-CchhhhccC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 400 ---KGSSAAGLTASVIRDGS-SREFYLEGG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 400 ---~~~~~~gl~~~~~~~~~-~~~~~~~~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
.......+.++...... -.+...... .-..++..|++|||+++|....+++|+..||+- |..
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-------------p~~ 149 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-------------PAH 149 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-------------CCC
Confidence 00000001110000000 000000000 002345679999999999999999999999853 233
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
+.+|.+|+.+ ..+++++.||+.. +.+... +...+.
T Consensus 150 ~ifIlatt~~-------------~ki~~tI~SRc~~-~~f~~~-------------------------------~~~ei~ 184 (559)
T PRK05563 150 VIFILATTEP-------------HKIPATILSRCQR-FDFKRI-------------------------------SVEDIV 184 (559)
T ss_pred eEEEEEeCCh-------------hhCcHHHHhHheE-EecCCC-------------------------------CHHHHH
Confidence 4444444311 1377889999853 333332 223333
Q ss_pred HHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 555 RYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 555 ~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
.++.+.-+.-...+++++...|... ..+++|.+.+++..+.+.+ .+.|+.+||..+
T Consensus 185 ~~L~~i~~~egi~i~~~al~~ia~~--------------------s~G~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 185 ERLKYILDKEGIEYEDEALRLIARA--------------------AEGGMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 3333321112335888998888875 2378999999987665543 467999999876
Q ss_pred HH
Q 004862 635 VR 636 (726)
Q Consensus 635 i~ 636 (726)
+.
T Consensus 241 lg 242 (559)
T PRK05563 241 TG 242 (559)
T ss_pred hC
Confidence 53
No 128
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=5.5e-09 Score=117.60 Aligned_cols=210 Identities=17% Similarity=0.153 Sum_probs=124.5
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceE-EEECCCchhHHHHHHHHHHhCCC-c-EE-eCCC-------
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNV-LLLGDPSTAKSQFLKFVEKTAPI-A-VY-TSGK------- 400 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~v-LL~G~pGtGKt~la~~i~~~~~~-~-~~-~~g~------- 400 (726)
-+.+|+||+.++..|.-++..+.. .|. ||+||||||||++|+++++.+.- . .. .+|.
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l------------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i 79 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRL------------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAV 79 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHH
Confidence 344689999999988877766511 355 99999999999999999876531 0 00 0110
Q ss_pred ----CCCcccccceeeecC-CCchhhhccCc-eeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 401 ----GSSAAGLTASVIRDG-SSREFYLEGGA-MVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 401 ----~~~~~gl~~~~~~~~-~~~~~~~~~G~-l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
......++++..... .-.+..-.... -..+...+++|||++.|+.+.++.|+..||+.. ..
T Consensus 80 ~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-------------~~ 146 (504)
T PRK14963 80 RRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-------------EH 146 (504)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-------------CC
Confidence 000111111100000 00000000010 123456799999999999999999999998631 23
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
+.+|.++|.+ ..+.+.+.+|+. .+.+... +.+.+.
T Consensus 147 t~~Il~t~~~-------------~kl~~~I~SRc~-~~~f~~l-------------------------------s~~el~ 181 (504)
T PRK14963 147 VIFILATTEP-------------EKMPPTILSRTQ-HFRFRRL-------------------------------TEEEIA 181 (504)
T ss_pred EEEEEEcCCh-------------hhCChHHhcceE-EEEecCC-------------------------------CHHHHH
Confidence 4555555521 236788889985 4444433 333344
Q ss_pred HHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 555 RYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 555 ~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
.|+...-..-.-.+++++.+.|... ..+++|.+.+++....+. ...|+.++|.++
T Consensus 182 ~~L~~i~~~egi~i~~~Al~~ia~~--------------------s~GdlR~aln~Lekl~~~-----~~~It~~~V~~~ 236 (504)
T PRK14963 182 GKLRRLLEAEGREAEPEALQLVARL--------------------ADGAMRDAESLLERLLAL-----GTPVTRKQVEEA 236 (504)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHhc-----CCCCCHHHHHHH
Confidence 4443321112234788999888876 347889998888755331 447999998877
Q ss_pred HH
Q 004862 635 VR 636 (726)
Q Consensus 635 i~ 636 (726)
+.
T Consensus 237 l~ 238 (504)
T PRK14963 237 LG 238 (504)
T ss_pred HC
Confidence 54
No 129
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=7.9e-09 Score=117.64 Aligned_cols=212 Identities=15% Similarity=0.084 Sum_probs=125.9
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcce-EEEECCCchhHHHHHHHHHHhCCCcEE----eCCCCCCccc
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVN-VLLLGDPSTAKSQFLKFVEKTAPIAVY----TSGKGSSAAG 406 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~-vLL~G~pGtGKt~la~~i~~~~~~~~~----~~g~~~~~~g 406 (726)
-+.+|+||+.+++.|.-++..|.. .| +||+||+|||||++|+.+++.+.-... -+|.=.+-..
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 78 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRI------------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA 78 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence 345688999999998888876621 46 699999999999999999876541100 0110000000
Q ss_pred cc------cee-eecCCC--c--hhh-hc--cC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEe
Q 004862 407 LT------ASV-IRDGSS--R--EFY-LE--GG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVL 471 (726)
Q Consensus 407 l~------~~~-~~~~~~--~--~~~-~~--~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l 471 (726)
+. ..+ .-+..+ + +.. +. .- .-..++..|++|||++.|+.+.+++|+..||+-
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp------------- 145 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP------------- 145 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-------------
Confidence 00 000 001000 0 000 00 00 002356679999999999999999999999962
Q ss_pred eCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHH
Q 004862 472 NSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEEN 551 (726)
Q Consensus 472 ~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 551 (726)
+..+.+|.+|+.+ ..+.+++.||. ..|.+.... .+
T Consensus 146 p~~~~fIL~tte~-------------~kll~TI~SRc-~~~~F~~l~-------------------------------~~ 180 (584)
T PRK14952 146 PEHLIFIFATTEP-------------EKVLPTIRSRT-HHYPFRLLP-------------------------------PR 180 (584)
T ss_pred CCCeEEEEEeCCh-------------HhhHHHHHHhc-eEEEeeCCC-------------------------------HH
Confidence 2234455444421 24788999996 445444333 23
Q ss_pred HHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHH
Q 004862 552 WLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEV 631 (726)
Q Consensus 552 ~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv 631 (726)
.+.+|+.+.-..-...+++++..+|..+ ..+++|.+.+++....+.+ +...|+.+++
T Consensus 181 ~i~~~L~~i~~~egi~i~~~al~~Ia~~--------------------s~GdlR~aln~Ldql~~~~---~~~~It~~~v 237 (584)
T PRK14952 181 TMRALIARICEQEGVVVDDAVYPLVIRA--------------------GGGSPRDTLSVLDQLLAGA---ADTHVTYQRA 237 (584)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHhcc---CCCCcCHHHH
Confidence 3333433321112335888888888775 3478999999987654433 2567999888
Q ss_pred HHHHH
Q 004862 632 NEAVR 636 (726)
Q Consensus 632 ~~ai~ 636 (726)
...+.
T Consensus 238 ~~llg 242 (584)
T PRK14952 238 LGLLG 242 (584)
T ss_pred HHHHC
Confidence 87653
No 130
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=1.4e-08 Score=115.44 Aligned_cols=207 Identities=18% Similarity=0.170 Sum_probs=121.8
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcce-EEEECCCchhHHHHHHHHHHhCCCcEEe----CCCCC-------
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVN-VLLLGDPSTAKSQFLKFVEKTAPIAVYT----SGKGS------- 402 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~-vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g~~~------- 402 (726)
+|+||+.+++.+.-++..+. - .| +||+||||+|||++|+.+++.+.-.... +|.-.
T Consensus 17 divGq~~v~~~L~~~i~~~~-----------~-~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-----------L-HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----------C-CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 57899999999888887651 1 34 6899999999999999998776321100 11100
Q ss_pred -Cccc---ccceeeecC-CCchhhhcc-CceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 403 -SAAG---LTASVIRDG-SSREFYLEG-GAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 403 -~~~g---l~~~~~~~~-~~~~~~~~~-G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
...+ +.++..... ...+..-.. ..-..++..|++|||+++|+.+.+++|+..||+- +..+.
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~~ 151 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVK 151 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCEE
Confidence 0000 000000000 000000000 0001234569999999999999999999999862 22344
Q ss_pred EEEec-CCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 477 VLAAA-NPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 477 iiaa~-Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
+|.+| +|. .+.++++||+ .++.+...+ .+.+.+
T Consensus 152 fIL~t~d~~--------------kil~tI~SRc-~~~~f~~l~-------------------------------~~~i~~ 185 (527)
T PRK14969 152 FILATTDPQ--------------KIPVTVLSRC-LQFNLKQMP-------------------------------PPLIVS 185 (527)
T ss_pred EEEEeCChh--------------hCchhHHHHH-HHHhcCCCC-------------------------------HHHHHH
Confidence 44444 431 2555688887 444443333 333333
Q ss_pred HHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 556 YIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 556 yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
|+...-..-.-.+++++.+.|... ..+++|.+.+++..+.+. ....|+.++|.+.+
T Consensus 186 ~L~~il~~egi~~~~~al~~la~~--------------------s~Gslr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 186 HLQHILEQENIPFDATALQLLARA--------------------AAGSMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 333211111224788888888876 347899999998766554 36779999998766
Q ss_pred H
Q 004862 636 R 636 (726)
Q Consensus 636 ~ 636 (726)
.
T Consensus 242 ~ 242 (527)
T PRK14969 242 G 242 (527)
T ss_pred C
Confidence 4
No 131
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.1e-08 Score=110.46 Aligned_cols=269 Identities=14% Similarity=0.100 Sum_probs=155.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc------EEeCCC-CCCcccccceee----ecCCCchhhhc-----cCcee-ec
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA------VYTSGK-GSSAAGLTASVI----RDGSSREFYLE-----GGAMV-LA 430 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~------~~~~g~-~~~~~gl~~~~~----~~~~~~~~~~~-----~G~l~-la 430 (726)
.|++++|+||||||..++++.+..... +|+... ..+...+...+. .-+.+|.-..+ -..+. ..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence 479999999999999999997655332 443221 111111111111 11111110000 00000 11
Q ss_pred CCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCe
Q 004862 431 DGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 431 ~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
..-|+.|||+|.|....++.|+.......- ..+++.+|+.+|. ..-...+.+.+-++|..
T Consensus 123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~~----------~~~~v~vi~i~n~----------~~~~~~ld~rv~s~l~~ 182 (366)
T COG1474 123 KTVIVILDEVDALVDKDGEVLYSLLRAPGE----------NKVKVSIIAVSND----------DKFLDYLDPRVKSSLGP 182 (366)
T ss_pred CeEEEEEcchhhhccccchHHHHHHhhccc----------cceeEEEEEEecc----------HHHHHHhhhhhhhccCc
Confidence 123788999999988766667766653221 1567899999993 22244566777777663
Q ss_pred ee-EeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHH-hHc-cCCCCCCHHHHHHHHHHHHHHHHHH
Q 004862 511 IF-IVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQY-CRL-ECHPRLSESASAKLRDQYVQIRKDM 587 (726)
Q Consensus 511 i~-~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~-a~~-~~~p~ls~ea~~~l~~~y~~~R~~~ 587 (726)
.- .+++.. .+.|..++.. +.. .-...+++++.+++...+..
T Consensus 183 ~~I~F~pY~-------------------------------a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~----- 226 (366)
T COG1474 183 SEIVFPPYT-------------------------------AEELYDILRERVEEGFSAGVIDDDVLKLIAALVAA----- 226 (366)
T ss_pred ceeeeCCCC-------------------------------HHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH-----
Confidence 22 233333 2223332222 111 12346889999988876421
Q ss_pred hhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHH
Q 004862 588 RRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQA 667 (726)
Q Consensus 588 ~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (726)
..+.+|....++|.|.-+|.-+.+.+|+++|+..|..-.+........ ..++..+.-.
T Consensus 227 ------------~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~------~~L~~~~ki~---- 284 (366)
T COG1474 227 ------------ESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVL------KTLPLHQKIV---- 284 (366)
T ss_pred ------------cCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHH------HcCCHhHHHH----
Confidence 235899999999999999999999999999999996555544332211 1222222222
Q ss_pred HHHHHHhcCCCCCCCHHHHHHH----HHHcCCCHHHHHHHHHHHHHCCeEEEec
Q 004862 668 ETQIKRRIPIGNQISERRLIDD----LTRMGMNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
+.++-... ..++-.++++. .+..+.++..+...+++|...|.|....
T Consensus 285 L~~i~~~~---~~~~~~~~y~~y~~~~~~~~~~~~~~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 285 LLAIVELT---VEISTGELYDVYESLCERLRTSQRRFSDIISELEGLGIVSASL 335 (366)
T ss_pred HHHHHHhc---CCCChHHHHHHHHHHHhhhCchHHHHHHHHHHHHhcCeEEeee
Confidence 22222221 23333333333 3446667888999999999999998653
No 132
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.07 E-value=2.2e-10 Score=107.14 Aligned_cols=115 Identities=18% Similarity=0.322 Sum_probs=80.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.+|||+|+|||||+++|+++|....+... .+.-..+... ..++ +..+.+|+++|+|++.++++.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~------~~~~~~~~~~----~~~~------l~~a~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANG------PFIVIDCASL----PAEL------LEQAKGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-------CCCCCHHCT----CHHH------HHHCTTSEEEEECGCCS-HHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCC------CeEEechhhC----cHHH------HHHcCCCEEEECChHHCCHHH
Confidence 79999999999999999999998776321 1111111111 1112 223589999999999999999
Q ss_pred HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeEecc
Q 004862 448 RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKD 516 (726)
Q Consensus 448 ~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d 516 (726)
|..|.++++... ..++++|+++..+ .....+...+.+.|+.||+ +.+.+|+
T Consensus 86 Q~~L~~~l~~~~------------~~~~RlI~ss~~~------l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 86 QRRLLDLLKRQE------------RSNVRLIASSSQD------LEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp HHHHHHHHHHCT------------TTTSEEEEEECC-------CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred HHHHHHHHHhcC------------CCCeEEEEEeCCC------HHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 999999998632 3467999999842 3355677889999999999 6666654
No 133
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.07 E-value=1.5e-08 Score=110.54 Aligned_cols=210 Identities=15% Similarity=0.130 Sum_probs=122.3
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE----eCCC--------
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY----TSGK-------- 400 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~----~~g~-------- 400 (726)
+.+|.|++.++..+.-++..|. -...+||+||||+|||++++.+++.+.-... .+|.
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-----------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-----------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 3468899999998888776651 1245899999999999999999877542200 0110
Q ss_pred ---CCCcccccceeeecCC-CchhhhccCce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 401 ---GSSAAGLTASVIRDGS-SREFYLEGGAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 401 ---~~~~~gl~~~~~~~~~-~~~~~~~~G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
......+.+....... ........... ..++..+++|||++.++...++.|+..+|+- +..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~ 148 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHV 148 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------ccce
Confidence 0000000000000000 00000001111 2345679999999999999899999998752 2345
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
.+|.++|.+ ..+.+++.+|+. .+.+.++. .+.+..
T Consensus 149 ~lIl~~~~~-------------~~l~~~l~sr~~-~~~~~~~~-------------------------------~~~l~~ 183 (355)
T TIGR02397 149 VFILATTEP-------------HKIPATILSRCQ-RFDFKRIP-------------------------------LEDIVE 183 (355)
T ss_pred eEEEEeCCH-------------HHHHHHHHhhee-EEEcCCCC-------------------------------HHHHHH
Confidence 666666521 135678889985 33333222 222233
Q ss_pred HHHH-hHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 556 YIQY-CRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 556 yi~~-a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
|+.. +++ -.-.+++++.+.|... ..+++|.+.+.+..+...+ ...|+.+||.++
T Consensus 184 ~l~~~~~~-~g~~i~~~a~~~l~~~--------------------~~g~~~~a~~~lekl~~~~----~~~it~~~v~~~ 238 (355)
T TIGR02397 184 RLKKILDK-EGIKIEDEALELIARA--------------------ADGSLRDALSLLDQLISFG----NGNITYEDVNEL 238 (355)
T ss_pred HHHHHHHH-cCCCCCHHHHHHHHHH--------------------cCCChHHHHHHHHHHHhhc----CCCCCHHHHHHH
Confidence 3222 221 1225788888888875 3467888888876554443 245999999877
Q ss_pred HH
Q 004862 635 VR 636 (726)
Q Consensus 635 i~ 636 (726)
+.
T Consensus 239 ~~ 240 (355)
T TIGR02397 239 LG 240 (355)
T ss_pred hC
Confidence 63
No 134
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=2.8e-09 Score=117.54 Aligned_cols=220 Identities=16% Similarity=0.121 Sum_probs=129.1
Q ss_pred HHHHhhcC----CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE-E-----
Q 004862 327 TVCSKIAP----SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV-Y----- 396 (726)
Q Consensus 327 ~l~~si~p----~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~-~----- 396 (726)
.|++.+-| +|+||+.+++.|.-++..| |-.+.+||+||||+|||++|+++++.+.-.. +
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~ 73 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADY 73 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccc
Confidence 34444444 6889999999887777665 2224599999999999999999987653210 0
Q ss_pred ------eCCCCCC------cccccceeeecCC-C--chhh-h-ccC--ceeecCCCeEEecccCcCCHHHHHHHHHHHhc
Q 004862 397 ------TSGKGSS------AAGLTASVIRDGS-S--REFY-L-EGG--AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 397 ------~~g~~~~------~~gl~~~~~~~~~-~--~~~~-~-~~G--~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~ 457 (726)
.+|.-.+ ............. . .+.. + +.- .-..++..+++|||++.|+.+.++.|+..||+
T Consensus 74 ~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe 153 (397)
T PRK14955 74 LQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE 153 (397)
T ss_pred cccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc
Confidence 0110000 0000000000000 0 0000 0 000 01245667999999999999999999999985
Q ss_pred ceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhc
Q 004862 458 QTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASA 537 (726)
Q Consensus 458 ~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~ 537 (726)
- +..+.+|.+++.. ..+.+++.+|+. ++.+
T Consensus 154 p-------------~~~t~~Il~t~~~-------------~kl~~tl~sR~~-~v~f----------------------- 183 (397)
T PRK14955 154 P-------------PPHAIFIFATTEL-------------HKIPATIASRCQ-RFNF----------------------- 183 (397)
T ss_pred C-------------CCCeEEEEEeCCh-------------HHhHHHHHHHHH-Hhhc-----------------------
Confidence 2 2234455555411 135567777774 2222
Q ss_pred ccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHH
Q 004862 538 DAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEAL 617 (726)
Q Consensus 538 ~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~ 617 (726)
.+++.+.+.+|+...-+.-...+++++.+.|... ..+++|.+.+.+....++
T Consensus 184 --------~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~--------------------s~g~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 184 --------KRIPLEEIQQQLQGICEAEGISVDADALQLIGRK--------------------AQGSMRDAQSILDQVIAF 235 (397)
T ss_pred --------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh
Confidence 2344445555544322112345899999999886 347899999988776666
Q ss_pred Hhh-hCCCcccHHHHHHHH
Q 004862 618 AKM-KLSHVATENEVNEAV 635 (726)
Q Consensus 618 A~l-~~~~~V~~~Dv~~ai 635 (726)
+.- .....|+.+||.+++
T Consensus 236 ~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 236 SVESEGEGSIRYDKVAELL 254 (397)
T ss_pred ccccCCCCccCHHHHHHHH
Confidence 531 224579998888765
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=4.1e-08 Score=111.97 Aligned_cols=207 Identities=15% Similarity=0.109 Sum_probs=123.8
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE----eCCCCC------Cc
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY----TSGKGS------SA 404 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~----~~g~~~------~~ 404 (726)
+|+||+.+++.+.-++..+. -.+.+||+||||+|||++|+++++.+.-... .+|.-. ..
T Consensus 17 diiGqe~iv~~L~~~i~~~~-----------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-----------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDND 85 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcC
Confidence 68899999999888887651 1245999999999999999999887642110 011000 00
Q ss_pred ccccceeeecCC--Cc--hhh-h----ccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 405 AGLTASVIRDGS--SR--EFY-L----EGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 405 ~gl~~~~~~~~~--~~--~~~-~----~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
..+..... +.. .+ ... + .... ..++..+++|||++.|+...+++|+..||+- |..+
T Consensus 86 ~~~dv~~i-dgas~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~~ 150 (563)
T PRK06647 86 NSLDVIEI-DGASNTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYI 150 (563)
T ss_pred CCCCeEEe-cCcccCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCCE
Confidence 00000000 100 00 110 0 0000 1345679999999999999999999999852 2345
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
.+|.+++.+ ..+.++|.+|+.. +.+...+ .+.+.+
T Consensus 151 vfI~~tte~-------------~kL~~tI~SRc~~-~~f~~l~-------------------------------~~el~~ 185 (563)
T PRK06647 151 VFIFATTEV-------------HKLPATIKSRCQH-FNFRLLS-------------------------------LEKIYN 185 (563)
T ss_pred EEEEecCCh-------------HHhHHHHHHhceE-EEecCCC-------------------------------HHHHHH
Confidence 555555421 1377899999863 3343332 222333
Q ss_pred HHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 556 YIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 556 yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
++...-..-.-.+++++...|... ..+++|.+.+++..+.+.+ ...++.+++.+++
T Consensus 186 ~L~~i~~~egi~id~eAl~lLa~~--------------------s~GdlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 186 MLKKVCLEDQIKYEDEALKWIAYK--------------------STGSVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 332211112335889999988875 3478899999887554443 3568888888765
Q ss_pred H
Q 004862 636 R 636 (726)
Q Consensus 636 ~ 636 (726)
.
T Consensus 242 g 242 (563)
T PRK06647 242 G 242 (563)
T ss_pred C
Confidence 3
No 136
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.7e-09 Score=121.56 Aligned_cols=211 Identities=27% Similarity=0.393 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHH
Q 004862 309 QEEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~ 388 (726)
++|+.+|.++-++|..|..+ |. ..|. -+||+||||||||.||+++|
T Consensus 320 K~El~E~V~fLKNP~~Y~~l-----------------------GA---KiPk--------GvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQEL-----------------------GA---KIPK--------GVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHc-----------------------CC---cCcC--------ceEEECCCCCcHHHHHHHHh
Confidence 45677888888888888755 11 1233 39999999999999999999
Q ss_pred HhCCCcEEeCCCCCCcc----cccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH---------------HH
Q 004862 389 KTAPIAVYTSGKGSSAA----GLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED---------------RV 449 (726)
Q Consensus 389 ~~~~~~~~~~g~~~~~~----gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~---------------~~ 449 (726)
..+.-.++.. .++.+. |..++-+++ -| +-+-.. ...++||||||...... .+
T Consensus 366 GEAgVPF~sv-SGSEFvE~~~g~~asrvr~----lf---~~ar~~-aP~iifideida~~~~r~G~~~~~~~~e~e~tln 436 (774)
T KOG0731|consen 366 GEAGVPFFSV-SGSEFVEMFVGVGASRVRD----LF---PLARKN-APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLN 436 (774)
T ss_pred cccCCceeee-chHHHHHHhcccchHHHHH----HH---HHhhcc-CCeEEEecccccccccccccccCCCChHHHHHHH
Confidence 9998877632 111221 222222221 11 001111 13599999999864322 12
Q ss_pred HHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHH
Q 004862 450 AIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIA 527 (726)
Q Consensus 450 ~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~ 527 (726)
.|+--|+ |... ...+.++|+||.+.. +.++|++ |||=.+.+.. | |..=+
T Consensus 437 Qll~emD---------gf~~--~~~vi~~a~tnr~d~-------------ld~allrpGRfdr~i~i~~-p----~~~~r 487 (774)
T KOG0731|consen 437 QLLVEMD---------GFET--SKGVIVLAATNRPDI-------------LDPALLRPGRFDRQIQIDL-P----DVKGR 487 (774)
T ss_pred HHHHHhc---------CCcC--CCcEEEEeccCCccc-------------cCHHhcCCCccccceeccC-C----chhhh
Confidence 2333332 1111 246889999997532 4555543 8997666543 3 33336
Q ss_pred HHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHH
Q 004862 528 SHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQL 607 (726)
Q Consensus 528 ~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L 607 (726)
..|++.|.....-. .+...+.+ .|. ..|. .+...|
T Consensus 488 ~~i~~~h~~~~~~~------~e~~dl~~---~a~--~t~g----------------------------------f~gadl 522 (774)
T KOG0731|consen 488 ASILKVHLRKKKLD------DEDVDLSK---LAS--LTPG----------------------------------FSGADL 522 (774)
T ss_pred HHHHHHHhhccCCC------cchhhHHH---HHh--cCCC----------------------------------CcHHHH
Confidence 67777776543210 11222222 121 2333 344555
Q ss_pred HHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 608 EAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 608 ~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
.++.--|.-+|--+.+..|+..|+..|++
T Consensus 523 ~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 523 ANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 56665566666666677788888887776
No 137
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=9.6e-09 Score=118.01 Aligned_cols=209 Identities=16% Similarity=0.172 Sum_probs=123.8
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE----eCCCCCCcc----
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY----TSGKGSSAA---- 405 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~----~~g~~~~~~---- 405 (726)
-+|+||+.+++.|.-++-.|. -.+.+||+||+|+|||++|+.+++.+.-... -||.-.+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 368899999999988887661 1134699999999999999999887532110 011000000
Q ss_pred ccccee-eecCCCc----hh-hhc--cC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 406 GLTASV-IRDGSSR----EF-YLE--GG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 406 gl~~~~-~~~~~~~----~~-~~~--~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
|-...+ .-+..+. +. .+. .. .-..++..|++|||+++|+...+++|+..||+- +..+.
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~~~ 151 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPHVK 151 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCCeE
Confidence 000000 0000000 00 000 00 002355679999999999999999999999962 23455
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHH
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRY 556 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~y 556 (726)
+|.+||.+ ..++++++||+. .|.+.. ++.+.+..+
T Consensus 152 fIl~t~~~-------------~kl~~tI~SRc~-~~~f~~-------------------------------l~~~~i~~~ 186 (576)
T PRK14965 152 FIFATTEP-------------HKVPITILSRCQ-RFDFRR-------------------------------IPLQKIVDR 186 (576)
T ss_pred EEEEeCCh-------------hhhhHHHHHhhh-hhhcCC-------------------------------CCHHHHHHH
Confidence 55555521 237788999984 333332 233333333
Q ss_pred HHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 557 IQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 557 i~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
+...-+.-...+++++...|.+. ..++.|.+.+++..+.+.+ .+.|+.+|+...+
T Consensus 187 L~~i~~~egi~i~~~al~~la~~--------------------a~G~lr~al~~Ldqliay~----g~~It~edV~~ll 241 (576)
T PRK14965 187 LRYIADQEGISISDAALALVARK--------------------GDGSMRDSLSTLDQVLAFC----GDAVGDDDVAELL 241 (576)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 33211112335889999888876 3478899988887555443 2469999988653
No 138
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.05 E-value=1.7e-09 Score=128.63 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=86.1
Q ss_pred CCccCchhHHHHHHHHHhCCCcc-cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRK-NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~-~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
-+|.|++.+|+.+.-.+.-.... ..-.....+....+||+||||||||++|++++..+...++... ...+....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~----~~~l~~~~v 528 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR----GPEILSKWV 528 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe----hHHHhhccc
Confidence 44779999998876554321110 0000011233356999999999999999999998766544210 001111111
Q ss_pred ecCCCchhhhccCce---eecCCCeEEecccCcCCHH------------HHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 413 RDGSSREFYLEGGAM---VLADGGVVCIDEFDKMRPE------------DRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 413 ~~~~~~~~~~~~G~l---~la~~gvl~iDEi~~~~~~------------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
.+ .+..+. ..+ ......|+||||+|.+.+. ..+.|+..|+.-. -..++.|
T Consensus 529 Ge---se~~i~-~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~v~v 593 (733)
T TIGR01243 529 GE---SEKAIR-EIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-----------ELSNVVV 593 (733)
T ss_pred Cc---HHHHHH-HHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-----------CCCCEEE
Confidence 00 000000 001 1223579999999987321 2234555554210 1346889
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCC
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIR 518 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~ 518 (726)
|||||.+. .+.+++++ |||.++.++.+.
T Consensus 594 I~aTn~~~-------------~ld~allRpgRfd~~i~v~~Pd 623 (733)
T TIGR01243 594 IAATNRPD-------------ILDPALLRPGRFDRLILVPPPD 623 (733)
T ss_pred EEeCCChh-------------hCCHhhcCCCccceEEEeCCcC
Confidence 99999652 37888886 999888775543
No 139
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.04 E-value=7e-10 Score=103.67 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=88.6
Q ss_pred CchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCC---CcEEe-CCCCCCcccccceeee
Q 004862 338 GHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAP---IAVYT-SGKGSSAAGLTASVIR 413 (726)
Q Consensus 338 G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~---~~~~~-~g~~~~~~gl~~~~~~ 413 (726)
|++.+...+...+... +..+++++|+||+|||++++.++.... ..++. ...... .....
T Consensus 2 ~~~~~~~~i~~~~~~~------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~-----~~~~~ 64 (151)
T cd00009 2 GQEEAIEALREALELP------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL-----EGLVV 64 (151)
T ss_pred chHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh-----hhhHH
Confidence 5666777776666542 116899999999999999999998763 22221 110000 00000
Q ss_pred cCCCch--hhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCc
Q 004862 414 DGSSRE--FYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDL 491 (726)
Q Consensus 414 ~~~~~~--~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~ 491 (726)
...... +..........+.++++|||++.+++.....+++.++...... ..+.++.+|+++|+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~----- 132 (151)
T cd00009 65 AELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL----- 132 (151)
T ss_pred HHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc-----
Confidence 000000 0011112234567899999999998888888999888754321 23467899999997421
Q ss_pred cchhhhccCchhhhcccCeeeEec
Q 004862 492 KSAQDNIDLQTTILSRFDLIFIVK 515 (726)
Q Consensus 492 ~~~~~~~~l~~~Ll~RFdli~~l~ 515 (726)
..+.+.+.+||+..+.++
T Consensus 133 ------~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 133 ------GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ------CCcChhHHhhhccEeecC
Confidence 346788999998766553
No 140
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.04 E-value=1.8e-09 Score=114.37 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=70.7
Q ss_pred cCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCC-CCcCCCccchhhhccCch
Q 004862 424 GGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPP-SGRYDDLKSAQDNIDLQT 502 (726)
Q Consensus 424 ~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~-~g~~~~~~~~~~~~~l~~ 502 (726)
.|.+..|++|++.++|+.+.+.+.+..|+.+++++.+.+. |....++.+..|||++|+. +..| .+....+
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e~~~~-------~~~k~~e 299 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQRF-------KSNKKNE 299 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHHHhhh-------hccccch
Confidence 4788899999999999999999999999999999998764 3333667788999999983 2222 1223468
Q ss_pred hhhcccCeeeEeccCCChhhhHHHHHHHHH
Q 004862 503 TILSRFDLIFIVKDIRMYNQDKLIASHIIK 532 (726)
Q Consensus 503 ~Ll~RFdli~~l~d~~~~~~d~~i~~~il~ 532 (726)
+|++|+. ++.++-..+-....+|.+..+.
T Consensus 300 af~dR~~-~i~vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 300 ALLDRII-KVKVPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred hhhhceE-EEeCCCcCCHHHHHHHHHHHhc
Confidence 9999998 4444444433333455444443
No 141
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=1.2e-08 Score=120.42 Aligned_cols=206 Identities=17% Similarity=0.136 Sum_probs=118.8
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc----EEeCCCCC--------
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA----VYTSGKGS-------- 402 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~----~~~~g~~~-------- 402 (726)
+|+||+.+++.|.-++..+ |-.+-+||+|++|||||++++.+++.+.=. ...||.=.
T Consensus 16 eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g 84 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPG 84 (824)
T ss_pred HhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcC
Confidence 6789999999988888765 122337999999999999999998776310 00011100
Q ss_pred --CcccccceeeecCCC--c--hh-hhcc---CceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 403 --SAAGLTASVIRDGSS--R--EF-YLEG---GAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 403 --~~~gl~~~~~~~~~~--~--~~-~~~~---G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
....+. .+ +..+ + +. .+.. -.-......|++|||+++|+...++.|+..||+- +
T Consensus 85 ~~~~~dv~--ei-daas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-------------P 148 (824)
T PRK07764 85 GPGSLDVT--EI-DAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-------------P 148 (824)
T ss_pred CCCCCcEE--Ee-cccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-------------C
Confidence 000000 00 0000 0 00 0000 0002245569999999999999999999999962 2
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
..+.+|.+||-. ..+.++|.||.- ++.+... +.+.
T Consensus 149 ~~~~fIl~tt~~-------------~kLl~TIrSRc~-~v~F~~l-------------------------------~~~~ 183 (824)
T PRK07764 149 EHLKFIFATTEP-------------DKVIGTIRSRTH-HYPFRLV-------------------------------PPEV 183 (824)
T ss_pred CCeEEEEEeCCh-------------hhhhHHHHhhee-EEEeeCC-------------------------------CHHH
Confidence 234555555421 127778999984 3333322 2233
Q ss_pred HHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 004862 553 LKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN 632 (726)
Q Consensus 553 L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~ 632 (726)
|.+|+...-..-...+++++..+|... ..+++|.+.+++....+.+ ..+.|+.+++.
T Consensus 184 l~~~L~~il~~EGv~id~eal~lLa~~--------------------sgGdlR~Al~eLEKLia~~---~~~~IT~e~V~ 240 (824)
T PRK07764 184 MRGYLERICAQEGVPVEPGVLPLVIRA--------------------GGGSVRDSLSVLDQLLAGA---GPEGVTYERAV 240 (824)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHhhc---CCCCCCHHHHH
Confidence 333333211111234788888877765 2367788877776544332 25668888887
Q ss_pred HHH
Q 004862 633 EAV 635 (726)
Q Consensus 633 ~ai 635 (726)
..+
T Consensus 241 all 243 (824)
T PRK07764 241 ALL 243 (824)
T ss_pred HHh
Confidence 654
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=2.3e-08 Score=115.09 Aligned_cols=210 Identities=16% Similarity=0.167 Sum_probs=123.6
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE-----eCCCCCCcccccc
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY-----TSGKGSSAAGLTA 409 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~-----~~g~~~~~~gl~~ 409 (726)
+|+||+.+++.+.-++..+ |-.+..||+||+|+|||++|+.+++.+.-... .|+.-.+..+...
T Consensus 19 dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~ 87 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSL 87 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCC
Confidence 5789999999988888766 12244699999999999999999876532110 0000000000000
Q ss_pred eee-ecCCC--c-----hhhhccCce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEe
Q 004862 410 SVI-RDGSS--R-----EFYLEGGAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAA 480 (726)
Q Consensus 410 ~~~-~~~~~--~-----~~~~~~G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa 480 (726)
.+. -+..+ + +..-..... ..++..|++|||++.|....+++|+..||+- |..+.+|.+
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILa 154 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILA 154 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEE
Confidence 000 00000 0 000000001 1245569999999999999999999999963 233455555
Q ss_pred cCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHh
Q 004862 481 ANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYC 560 (726)
Q Consensus 481 ~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a 560 (726)
|+.+ ..+++++++|+. .+.+.+.+ .+.+.+++...
T Consensus 155 Tte~-------------~KLl~TI~SRcq-~ieF~~L~-------------------------------~eeI~~~L~~i 189 (725)
T PRK07133 155 TTEV-------------HKIPLTILSRVQ-RFNFRRIS-------------------------------EDEIVSRLEFI 189 (725)
T ss_pred cCCh-------------hhhhHHHHhhce-eEEccCCC-------------------------------HHHHHHHHHHH
Confidence 5421 137788999995 45444333 23333333321
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 561 RLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 561 ~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
-..-.-.+++++.+.|... ..+++|.+.+++..+.+.+ ...|+.+++.+++.+
T Consensus 190 l~kegI~id~eAl~~LA~l--------------------S~GslR~AlslLekl~~y~----~~~It~e~V~ellg~ 242 (725)
T PRK07133 190 LEKENISYEKNALKLIAKL--------------------SSGSLRDALSIAEQVSIFG----NNKITLKNVEELFGL 242 (725)
T ss_pred HHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHcC
Confidence 1112235788888888775 3478899888887655443 345899998876543
No 143
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.3e-10 Score=117.56 Aligned_cols=158 Identities=27% Similarity=0.347 Sum_probs=94.2
Q ss_pred CCccCchhHHHHHHHHHhC--CCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccccee
Q 004862 334 PSIFGHDDVKKAVSCLLFG--GSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASV 411 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~--~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~ 411 (726)
-+|.|.+.+|.++--...= ..+.--..|.-.+....|||+||||||||++|+++++.+...+. ++..+.
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fI---------nv~~s~ 162 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFI---------NVSVSN 162 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcc---------eeeccc
Confidence 3577888887775322211 01111114445667788999999999999999999998765433 121111
Q ss_pred eecCCCchhhhccCce-----eec---CCCeEEecccCcCCHHHHHHHHHHHhc--ceEeeeccceEEEeeCceEEEEec
Q 004862 412 IRDGSSREFYLEGGAM-----VLA---DGGVVCIDEFDKMRPEDRVAIHEAMEQ--QTISIAKAGITTVLNSRTSVLAAA 481 (726)
Q Consensus 412 ~~~~~~~~~~~~~G~l-----~la---~~gvl~iDEi~~~~~~~~~~L~~~me~--~~i~i~~~g~~~~l~~~~~iiaa~ 481 (726)
. ++.|.-++..+ .+| ...++||||+|.+-...+..=||+|.. .++-..=.|....-+.++.|+|||
T Consensus 163 l----t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 163 L----TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred c----chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 1 22343332222 233 246999999998753334444555542 111111134444445679999999
Q ss_pred CCCCCcCCCccchhhhccCchhhhcccCeeeEeccC
Q 004862 482 NPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDI 517 (726)
Q Consensus 482 Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~ 517 (726)
|.|. .+..++++|+.-.|.+.-+
T Consensus 239 NRP~-------------DlDeAiiRR~p~rf~V~lP 261 (386)
T KOG0737|consen 239 NRPF-------------DLDEAIIRRLPRRFHVGLP 261 (386)
T ss_pred CCCc-------------cHHHHHHHhCcceeeeCCC
Confidence 9763 3789999999977766433
No 144
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.4e-09 Score=106.94 Aligned_cols=193 Identities=22% Similarity=0.244 Sum_probs=110.7
Q ss_pred ccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCC--CcccccceeeecCCCchhhhccCceeecC---CCeEEe
Q 004862 364 LRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGS--SAAGLTASVIRDGSSREFYLEGGAMVLAD---GGVVCI 437 (726)
Q Consensus 364 ~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~--~~~gl~~~~~~~~~~~~~~~~~G~l~la~---~gvl~i 437 (726)
++..-.+|++||||||||.+||+++......+.. .|... -+.|-.+..++ .++.+|. ..|+||
T Consensus 202 i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVR-----------DAFaLAKEkaP~IIFI 270 (424)
T KOG0652|consen 202 IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVR-----------DAFALAKEKAPTIIFI 270 (424)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHH-----------HHHHHhhccCCeEEEE
Confidence 4444569999999999999999998765432210 00000 00111111222 1233332 469999
Q ss_pred cccCcCC-----------HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc
Q 004862 438 DEFDKMR-----------PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS 506 (726)
Q Consensus 438 DEi~~~~-----------~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~ 506 (726)
||+|.+. .+.|-.+++.+.|-- |- .-..++.||||||... -+.|+||+
T Consensus 271 DElDAIGtKRfDSek~GDREVQRTMLELLNQLD------GF--ss~~~vKviAATNRvD-------------iLDPALlR 329 (424)
T KOG0652|consen 271 DELDAIGTKRFDSEKAGDREVQRTMLELLNQLD------GF--SSDDRVKVIAATNRVD-------------ILDPALLR 329 (424)
T ss_pred echhhhccccccccccccHHHHHHHHHHHHhhc------CC--CCccceEEEeeccccc-------------ccCHHHhh
Confidence 9999863 456788888887521 11 1245789999999631 15667664
Q ss_pred --ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHH
Q 004862 507 --RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIR 584 (726)
Q Consensus 507 --RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R 584 (726)
|.|--+.++-+.. .-+.+|+.+|....+.. +.+..+.| ||.
T Consensus 330 SGRLDRKIEfP~Pne-----~aRarIlQIHsRKMnv~----~DvNfeEL------aRs---------------------- 372 (424)
T KOG0652|consen 330 SGRLDRKIEFPHPNE-----EARARILQIHSRKMNVS----DDVNFEEL------ARS---------------------- 372 (424)
T ss_pred cccccccccCCCCCh-----HHHHHHHHHhhhhcCCC----CCCCHHHH------hhc----------------------
Confidence 5775555544432 23667788876654322 11222222 111
Q ss_pred HHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 004862 585 KDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFT 639 (726)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 639 (726)
.-.+|-.|+.++.--|-..|.-+....|+-+|..++|.-++
T Consensus 373 --------------TddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 373 --------------TDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQ 413 (424)
T ss_pred --------------ccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHH
Confidence 11244456666555555666666778899999999885444
No 145
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.02 E-value=2.3e-09 Score=130.63 Aligned_cols=198 Identities=12% Similarity=0.206 Sum_probs=109.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCc---ccccc---------------eeeecCCCc--h-------
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSA---AGLTA---------------SVIRDGSSR--E------- 419 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~---~gl~~---------------~~~~~~~~~--~------- 419 (726)
-.|||+||||||||.||+++|..+...++. +|...-. .|... .+-++-.+. +
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~ 1710 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTM 1710 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhh
Confidence 369999999999999999999988776553 1110000 00000 000000000 0
Q ss_pred -hhhccCc------eeec---CCCeEEecccCcCCHHH-----HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCC
Q 004862 420 -FYLEGGA------MVLA---DGGVVCIDEFDKMRPED-----RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPP 484 (726)
Q Consensus 420 -~~~~~G~------l~la---~~gvl~iDEi~~~~~~~-----~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~ 484 (726)
.....++ +.+| ...|+||||||.+.... ...|+..|+... . ..-...+.||||||.|
T Consensus 1711 ~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~-------~-~~s~~~VIVIAATNRP 1782 (2281)
T CHL00206 1711 DMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC-------E-RCSTRNILVIASTHIP 1782 (2281)
T ss_pred hhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc-------c-cCCCCCEEEEEeCCCc
Confidence 0001111 2223 24699999999997653 244555554211 0 0012357899999976
Q ss_pred CCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHc
Q 004862 485 SGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRL 562 (726)
Q Consensus 485 ~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~ 562 (726)
. .++|||++ |||-.+.++.+.-..+...+. ++ .+...
T Consensus 1783 D-------------~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~--IL-l~tkg------------------------- 1821 (2281)
T CHL00206 1783 Q-------------KVDPALIAPNKLNTCIKIRRLLIPQQRKHFF--TL-SYTRG------------------------- 1821 (2281)
T ss_pred c-------------cCCHhHcCCCCCCeEEEeCCCCchhHHHHHH--HH-HhhcC-------------------------
Confidence 2 28899998 999777765444222111111 00 01000
Q ss_pred cCCCCCCHHH--HHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 563 ECHPRLSESA--SAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 563 ~~~p~ls~ea--~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
++ +.++. .+.+.+ ..-..|.+.|.+++.-|...|-.+.+..|+.+|+..|+.
T Consensus 1822 -~~--L~~~~vdl~~LA~-------------------~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1822 -FH--LEKKMFHTNGFGS-------------------ITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred -CC--CCcccccHHHHHH-------------------hCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 00 11100 111111 134468899999999888888888888999999999875
No 146
>PRK06620 hypothetical protein; Validated
Probab=99.02 E-value=9.6e-09 Score=103.23 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=97.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.+++|+||||+|||+|++++++.... .+.. .... ... ......++|||||+.+...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~-----~~~~---------~~~--------~~~~~d~lliDdi~~~~~~- 100 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-YIIK-----DIFF---------NEE--------ILEKYNAFIIEDIENWQEP- 100 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-EEcc-----hhhh---------chh--------HHhcCCEEEEeccccchHH-
Confidence 46999999999999999998775432 2211 0000 000 0123468999999976432
Q ss_pred HHHHHHHH----hcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEeccCCChh
Q 004862 448 RVAIHEAM----EQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKDIRMYN 521 (726)
Q Consensus 448 ~~~L~~~m----e~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d~~~~~ 521 (726)
.|.... |.|. ..+++++.++. ...+ ++|.||+. +++.+..+.+++
T Consensus 101 --~lf~l~N~~~e~g~---------------~ilits~~~p~-----------~l~l-~~L~SRl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 101 --ALLHIFNIINEKQK---------------YLLLTSSDKSR-----------NFTL-PDLSSRIKSVLSILLNSPDDEL 151 (214)
T ss_pred --HHHHHHHHHHhcCC---------------EEEEEcCCCcc-----------ccch-HHHHHHHhCCceEeeCCCCHHH
Confidence 333332 3332 23555554431 2236 88999998 566665544221
Q ss_pred hhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 004862 522 QDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIP 601 (726)
Q Consensus 522 ~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~ 601 (726)
+ ..++ ++.. +. ..-.+++++.++|... ++
T Consensus 152 ----~-~~~l----------------------~k~~---~~-~~l~l~~ev~~~L~~~--------------------~~ 180 (214)
T PRK06620 152 ----I-KILI----------------------FKHF---SI-SSVTISRQIIDFLLVN--------------------LP 180 (214)
T ss_pred ----H-HHHH----------------------HHHH---HH-cCCCCCHHHHHHHHHH--------------------cc
Confidence 1 1111 1111 11 1235999999999986 56
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 602 ITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 602 ~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
.+.|.+++++....+.|.... ..||...+.+++
T Consensus 181 ~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 181 REYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 889999999987665555443 468888887764
No 147
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=2.2e-08 Score=115.60 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=121.3
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE-----eCCCCCCcc-
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY-----TSGKGSSAA- 405 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~-----~~g~~~~~~- 405 (726)
-+.+|+||+.+++.|.-++..+. -.+.+||+||||+|||++++.+++.+.-... .+|.-....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~-----------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR-----------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 34478899999999887777651 1245799999999999999999877631100 011000000
Q ss_pred ---cccceee-ecCC--Cc--hh---h--hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 406 ---GLTASVI-RDGS--SR--EF---Y--LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 406 ---gl~~~~~-~~~~--~~--~~---~--~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
+....+. -+.. .+ .. . .... -..++..|++|||++.|+.+.++.|+..||+-.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~-p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp------------- 148 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFR-PALARYKVYIIDEVHMLSTAAFNALLKTLEEPP------------- 148 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhC-cccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-------------
Confidence 0000000 0000 00 00 0 0000 123567799999999999999999999998631
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
..+.+|.+++.. ..+.+.+.+|+.. +.+.... ...
T Consensus 149 ~~tv~Il~t~~~-------------~kll~tI~SR~~~-i~f~~l~-------------------------------~~e 183 (585)
T PRK14950 149 PHAIFILATTEV-------------HKVPATILSRCQR-FDFHRHS-------------------------------VAD 183 (585)
T ss_pred CCeEEEEEeCCh-------------hhhhHHHHhccce-eeCCCCC-------------------------------HHH
Confidence 234455444411 1255678888753 3333222 222
Q ss_pred HHHHHHH-hHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHH
Q 004862 553 LKRYIQY-CRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEV 631 (726)
Q Consensus 553 L~~yi~~-a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv 631 (726)
+..++.. ++. -.-.+++++...|..+ ..+++|.+.+.+...... ....|+.+++
T Consensus 184 l~~~L~~~a~~-egl~i~~eal~~La~~--------------------s~Gdlr~al~~LekL~~y----~~~~It~e~V 238 (585)
T PRK14950 184 MAAHLRKIAAA-EGINLEPGALEAIARA--------------------ATGSMRDAENLLQQLATT----YGGEISLSQV 238 (585)
T ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh----cCCCCCHHHH
Confidence 2233222 221 2234888888888776 347889888888743322 3557999998
Q ss_pred HHHHH
Q 004862 632 NEAVR 636 (726)
Q Consensus 632 ~~ai~ 636 (726)
.+.+.
T Consensus 239 ~~ll~ 243 (585)
T PRK14950 239 QSLLG 243 (585)
T ss_pred HHHhc
Confidence 87654
No 148
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.5e-09 Score=120.56 Aligned_cols=220 Identities=21% Similarity=0.227 Sum_probs=123.4
Q ss_pred CccCchhHHHHHHHHHhCCCcc-cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRK-NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 413 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~-~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~ 413 (726)
+|.|.+.+|..+.-++.-.... ..-.+...+....+||+||||||||+||++++..+...+...-. ..++
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~----~~l~----- 313 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG----SELL----- 313 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC----HHHh-----
Confidence 3556777766654433221100 00000113344589999999999999999999977665542100 0111
Q ss_pred cCCCchhhhccCc-----ee---ecCCCeEEecccCcCCHH-----------HHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 414 DGSSREFYLEGGA-----MV---LADGGVVCIDEFDKMRPE-----------DRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 414 ~~~~~~~~~~~G~-----l~---la~~gvl~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
+.|..+... +. .....|+||||+|.+-+. ....|+..|+... + ..+
T Consensus 314 ----sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e----~-------~~~ 378 (494)
T COG0464 314 ----SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE----K-------AEG 378 (494)
T ss_pred ----ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC----c-------cCc
Confidence 112111111 11 233579999999997432 3344555554221 1 124
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
+.||||||.+. .+++++++ |||-.+.++.+...+ +..++..|...... .+..+
T Consensus 379 v~vi~aTN~p~-------------~ld~a~lR~gRfd~~i~v~~pd~~~-----r~~i~~~~~~~~~~------~~~~~- 433 (494)
T COG0464 379 VLVIAATNRPD-------------DLDPALLRPGRFDRLIYVPLPDLEE-----RLEIFKIHLRDKKP------PLAED- 433 (494)
T ss_pred eEEEecCCCcc-------------ccCHhhcccCccceEeecCCCCHHH-----HHHHHHHHhcccCC------cchhh-
Confidence 77999999763 27889999 999887776554332 44444444332110 01111
Q ss_pred HHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhC-CCcccHHHH
Q 004862 553 LKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKL-SHVATENEV 631 (726)
Q Consensus 553 L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~-~~~V~~~Dv 631 (726)
-..+.+.+. .-..+..++..+++-|.-.|.-+. ...|+.+|+
T Consensus 434 ------------------~~~~~l~~~-------------------t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~ 476 (494)
T COG0464 434 ------------------VDLEELAEI-------------------TEGYSGADIAALVREAALEALREARRREVTLDDF 476 (494)
T ss_pred ------------------hhHHHHHHH-------------------hcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHH
Confidence 111111110 011567888888888887777666 678999999
Q ss_pred HHHHHHHhh
Q 004862 632 NEAVRLFTV 640 (726)
Q Consensus 632 ~~ai~l~~~ 640 (726)
.+|++-...
T Consensus 477 ~~a~~~~~p 485 (494)
T COG0464 477 LDALKKIKP 485 (494)
T ss_pred HHHHHhcCC
Confidence 999976443
No 149
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=2.1e-08 Score=112.62 Aligned_cols=207 Identities=19% Similarity=0.173 Sum_probs=123.5
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc---E-EeCCCC--------
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA---V-YTSGKG-------- 401 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~---~-~~~g~~-------- 401 (726)
-++.||+.+.+.+.-++..+. -.+..||+||||+|||++|+.+++.+.-. . ..+|.-
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~ 84 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDK 84 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhc
Confidence 357799999999888886651 11336899999999999999998876421 0 001100
Q ss_pred CCcccc---cceeeecCCCchh-hh--ccCce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 402 SSAAGL---TASVIRDGSSREF-YL--EGGAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 402 ~~~~gl---~~~~~~~~~~~~~-~~--~~G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
.+..++ .++..+. .... .+ ..... ..++..|++|||++.|+.+.+++|+..||+- +..
T Consensus 85 g~~~d~~eidaas~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-------------p~~ 149 (486)
T PRK14953 85 GSFPDLIEIDAASNRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-------------PPR 149 (486)
T ss_pred CCCCcEEEEeCccCCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-------------CCC
Confidence 000011 0000000 0000 00 00001 2345679999999999999999999999853 223
Q ss_pred eEE-EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHH
Q 004862 475 TSV-LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWL 553 (726)
Q Consensus 475 ~~i-iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L 553 (726)
+.+ ++++++ ..+++++.+|+. .+.+.+ ++.+.+
T Consensus 150 ~v~Il~tt~~--------------~kl~~tI~SRc~-~i~f~~-------------------------------ls~~el 183 (486)
T PRK14953 150 TIFILCTTEY--------------DKIPPTILSRCQ-RFIFSK-------------------------------PTKEQI 183 (486)
T ss_pred eEEEEEECCH--------------HHHHHHHHHhce-EEEcCC-------------------------------CCHHHH
Confidence 344 444432 126678899985 343433 233334
Q ss_pred HHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHH
Q 004862 554 KRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNE 633 (726)
Q Consensus 554 ~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ 633 (726)
..|+...-+.-.-.+++++.+.|..+ ..+++|.+.+++..+.+.+ ...++.++|.+
T Consensus 184 ~~~L~~i~k~egi~id~~al~~La~~--------------------s~G~lr~al~~Ldkl~~~~----~~~It~~~V~~ 239 (486)
T PRK14953 184 KEYLKRICNEEKIEYEEKALDLLAQA--------------------SEGGMRDAASLLDQASTYG----EGKVTIKVVEE 239 (486)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhc----CCCcCHHHHHH
Confidence 44433311112335788999988876 3478999999998765543 45799999998
Q ss_pred HHH
Q 004862 634 AVR 636 (726)
Q Consensus 634 ai~ 636 (726)
++.
T Consensus 240 ~lg 242 (486)
T PRK14953 240 FLG 242 (486)
T ss_pred HhC
Confidence 764
No 150
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.00 E-value=1.3e-08 Score=119.40 Aligned_cols=195 Identities=11% Similarity=0.143 Sum_probs=103.0
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC----------cEEeCCCCCCc
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI----------AVYTSGKGSSA 404 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~----------~~~~~g~~~~~ 404 (726)
.++|.+..-.-++-.|... ...|+||+||||||||.+++.++...-. .++.. +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----~~ 250 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----DI 250 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----cH
Confidence 4778777666665555443 2268999999999999999999865311 11100 00
Q ss_pred ccccceeeecCCCchhhhccC----ceeecCCCeEEecccCcCC---------HHHHHHHHHHHhcceEeeeccceEEEe
Q 004862 405 AGLTASVIRDGSSREFYLEGG----AMVLADGGVVCIDEFDKMR---------PEDRVAIHEAMEQQTISIAKAGITTVL 471 (726)
Q Consensus 405 ~gl~~~~~~~~~~~~~~~~~G----~l~la~~gvl~iDEi~~~~---------~~~~~~L~~~me~~~i~i~~~g~~~~l 471 (726)
..+.+.. ...|+|...-. .+....++|+|||||+.+- .+..+.|..+++.+
T Consensus 251 ~~llaG~---~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g------------- 314 (758)
T PRK11034 251 GSLLAGT---KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG------------- 314 (758)
T ss_pred HHHhccc---chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-------------
Confidence 0111110 11223321110 1112456899999999871 12223455555543
Q ss_pred eCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHH
Q 004862 472 NSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEEN 551 (726)
Q Consensus 472 ~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 551 (726)
++.+|+|||+.. ....+...++|.+||+. +.+..+. .+.-..|-+.+...+.... ...++.+
T Consensus 315 --~i~vIgATt~~E--------~~~~~~~D~AL~rRFq~-I~v~ePs-~~~~~~IL~~~~~~ye~~h------~v~i~~~ 376 (758)
T PRK11034 315 --KIRVIGSTTYQE--------FSNIFEKDRALARRFQK-IDITEPS-IEETVQIINGLKPKYEAHH------DVRYTAK 376 (758)
T ss_pred --CeEEEecCChHH--------HHHHhhccHHHHhhCcE-EEeCCCC-HHHHHHHHHHHHHHhhhcc------CCCcCHH
Confidence 367999999631 11234578999999984 4444433 3333333333322222211 1345556
Q ss_pred HHHHHHHHhHccCCC-CCCHHHHHHHHHH
Q 004862 552 WLKRYIQYCRLECHP-RLSESASAKLRDQ 579 (726)
Q Consensus 552 ~L~~yi~~a~~~~~p-~ls~ea~~~l~~~ 579 (726)
.++..+..+.+++.. .+++.|.+.|...
T Consensus 377 al~~a~~ls~ryi~~r~lPdKaidlldea 405 (758)
T PRK11034 377 AVRAAVELAVKYINDRHLPDKAIDVIDEA 405 (758)
T ss_pred HHHHHHHHhhccccCccChHHHHHHHHHH
Confidence 665555555554433 3555566666554
No 151
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.00 E-value=1.4e-09 Score=121.33 Aligned_cols=127 Identities=19% Similarity=0.193 Sum_probs=69.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeC-CCCCCcccccceeeecCCCchhh--hc---cCceeec---CCCeEEec
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS-GKGSSAAGLTASVIRDGSSREFY--LE---GGAMVLA---DGGVVCID 438 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~-g~~~~~~gl~~~~~~~~~~~~~~--~~---~G~l~la---~~gvl~iD 438 (726)
.++||+||||||||++++++++.+....+.. +....+..+..+-.-....++.. +. ..+...+ ...|+|||
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfID 296 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFD 296 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 4699999999999999999999876543320 00000000000000000001100 00 0000111 24599999
Q ss_pred ccCcCCHH------------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc
Q 004862 439 EFDKMRPE------------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS 506 (726)
Q Consensus 439 Ei~~~~~~------------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~ 506 (726)
|+|.+-.. ....|+..|+.-. . ..++.||+|||.+. .++++|++
T Consensus 297 EiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~----~-------~~~ViVI~ATN~~d-------------~LDpALlR 352 (512)
T TIGR03689 297 EMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE----S-------LDNVIVIGASNRED-------------MIDPAILR 352 (512)
T ss_pred hhhhhhcccCCCccchHHHHHHHHHHHHhcccc----c-------CCceEEEeccCChh-------------hCCHhhcC
Confidence 99987321 1234444444210 0 13578999999642 37899998
Q ss_pred --ccCeeeEeccCC
Q 004862 507 --RFDLIFIVKDIR 518 (726)
Q Consensus 507 --RFdli~~l~d~~ 518 (726)
|||..+.++.+.
T Consensus 353 pGRfD~~I~~~~Pd 366 (512)
T TIGR03689 353 PGRLDVKIRIERPD 366 (512)
T ss_pred ccccceEEEeCCCC
Confidence 999988776554
No 152
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.7e-08 Score=112.50 Aligned_cols=203 Identities=17% Similarity=0.148 Sum_probs=119.7
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE-----eCCC---------
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY-----TSGK--------- 400 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~-----~~g~--------- 400 (726)
+|+||+.++..+.-++..| +-.+.+||+||||+|||++|+.+++.+.-... .+|.
T Consensus 18 diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~ 86 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS 86 (451)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence 5889999999887777655 11245899999999999999999876532110 0100
Q ss_pred CC--CcccccceeeecCCCc--hhh--hcc-Cc-eeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 401 GS--SAAGLTASVIRDGSSR--EFY--LEG-GA-MVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 401 ~~--~~~gl~~~~~~~~~~~--~~~--~~~-G~-l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
+. ....+.++ ...+ ... .+. .. -..++..|++|||++.|..+.++.|+..||+- +
T Consensus 87 ~~~~d~~~i~g~----~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-------------~ 149 (451)
T PRK06305 87 GTSLDVLEIDGA----SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-------------P 149 (451)
T ss_pred CCCCceEEeecc----ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-------------C
Confidence 00 00000000 0000 000 000 00 01356679999999999999999999999862 2
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
..+.+|.++|.+ ..+.+++.+|+.+ +.+.... .+.
T Consensus 150 ~~~~~Il~t~~~-------------~kl~~tI~sRc~~-v~f~~l~-------------------------------~~e 184 (451)
T PRK06305 150 QHVKFFLATTEI-------------HKIPGTILSRCQK-MHLKRIP-------------------------------EET 184 (451)
T ss_pred CCceEEEEeCCh-------------HhcchHHHHhceE-EeCCCCC-------------------------------HHH
Confidence 245566666521 2377889999864 3343333 233
Q ss_pred HHHHHHH-hHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHH
Q 004862 553 LKRYIQY-CRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEV 631 (726)
Q Consensus 553 L~~yi~~-a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv 631 (726)
+.+++.. ++. ..-.+++++.+.|..+ ..+++|.+.+++...... . ...|+.++|
T Consensus 185 l~~~L~~~~~~-eg~~i~~~al~~L~~~--------------------s~gdlr~a~~~Lekl~~~---~-~~~It~~~V 239 (451)
T PRK06305 185 IIDKLALIAKQ-EGIETSREALLPIARA--------------------AQGSLRDAESLYDYVVGL---F-PKSLDPDSV 239 (451)
T ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh---c-cCCcCHHHH
Confidence 3333332 221 2234788888888876 346788888877654332 1 245888888
Q ss_pred HHHH
Q 004862 632 NEAV 635 (726)
Q Consensus 632 ~~ai 635 (726)
.+++
T Consensus 240 ~~l~ 243 (451)
T PRK06305 240 AKAL 243 (451)
T ss_pred HHHH
Confidence 7655
No 153
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=6.3e-08 Score=111.08 Aligned_cols=211 Identities=16% Similarity=0.135 Sum_probs=123.1
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE------------EeCCCC
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV------------YTSGKG 401 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~------------~~~g~~ 401 (726)
.+|+||+.+++.|.-++..| |-.+.+||+||||+|||++|+.+++.+.-.. ..||.-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 35789999999888777665 2224599999999999999999987653210 001110
Q ss_pred CC------cccccceeeecCC--Cc--hhh-----hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccc
Q 004862 402 SS------AAGLTASVIRDGS--SR--EFY-----LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAG 466 (726)
Q Consensus 402 ~~------~~gl~~~~~~~~~--~~--~~~-----~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g 466 (726)
.+ ...+..... +.. .+ +.. +.-+. ..++.-|++|||++.|....+++|+..||+-
T Consensus 85 ~sC~~~~~g~~~n~~~~-d~~s~~~vd~Ir~l~e~~~~~P-~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-------- 154 (620)
T PRK14954 85 ESCRDFDAGTSLNISEF-DAASNNSVDDIRQLRENVRYGP-QKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-------- 154 (620)
T ss_pred HHHHHHhccCCCCeEEe-cccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEeChhhcCHHHHHHHHHHHhCC--------
Confidence 00 000000000 100 00 000 00001 2456679999999999999999999999962
Q ss_pred eEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccc
Q 004862 467 ITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKV 546 (726)
Q Consensus 467 ~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 546 (726)
+..+.+|.+++.. ..+.+++.+|.. ++.+.
T Consensus 155 -----p~~tv~IL~t~~~-------------~kLl~TI~SRc~-~vef~------------------------------- 184 (620)
T PRK14954 155 -----PPHAIFIFATTEL-------------HKIPATIASRCQ-RFNFK------------------------------- 184 (620)
T ss_pred -----CCCeEEEEEeCCh-------------hhhhHHHHhhce-EEecC-------------------------------
Confidence 1223344344311 236778888974 33332
Q ss_pred cCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHh-hhCCCc
Q 004862 547 SKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAK-MKLSHV 625 (726)
Q Consensus 547 ~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~-l~~~~~ 625 (726)
.++.+.+.+|+...-..-.-.+++++.+.|... ..+++|.+.+.+....+++. -.....
T Consensus 185 ~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~--------------------s~Gdlr~al~eLeKL~~y~~~~~~~~~ 244 (620)
T PRK14954 185 RIPLDEIQSQLQMICRAEGIQIDADALQLIARK--------------------AQGSMRDAQSILDQVIAFSVGSEAEKV 244 (620)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------hCCCHHHHHHHHHHHHHhccccccCCc
Confidence 233344444444321112335889999888876 34788888888775555541 012456
Q ss_pred ccHHHHHHHH
Q 004862 626 ATENEVNEAV 635 (726)
Q Consensus 626 V~~~Dv~~ai 635 (726)
|+.+||.+.+
T Consensus 245 It~~~V~~lv 254 (620)
T PRK14954 245 IAYQGVAELL 254 (620)
T ss_pred cCHHHHHHHH
Confidence 8888887765
No 154
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.98 E-value=6.6e-09 Score=106.21 Aligned_cols=181 Identities=18% Similarity=0.202 Sum_probs=102.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC----cEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI----AVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~----~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~ 443 (726)
.+++|+||||||||+|++++++.... ..|.... .. ... ..+. . .+ +..-.++||||++.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~-----~~-~~~-----~~~~-~-~~---~~~~dlliiDdi~~~ 109 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD-----KR-AWF-----VPEV-L-EG---MEQLSLVCIDNIECI 109 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH-----HH-hhh-----hHHH-H-HH---hhhCCEEEEeChhhh
Confidence 58999999999999999998765432 1221100 00 000 0000 0 00 111248999999998
Q ss_pred CH--HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEeccCCC
Q 004862 444 RP--EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKDIRM 519 (726)
Q Consensus 444 ~~--~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d~~~ 519 (726)
+. ..+..|+.++.... .. .++++|.|++.+...| ..+.++|.||+. +++.+.++.+
T Consensus 110 ~~~~~~~~~lf~l~n~~~----e~-------g~~~li~ts~~~p~~l---------~~~~~~L~SRl~~g~~~~l~~~~~ 169 (235)
T PRK08084 110 AGDELWEMAIFDLYNRIL----ES-------GRTRLLITGDRPPRQL---------NLGLPDLASRLDWGQIYKLQPLSD 169 (235)
T ss_pred cCCHHHHHHHHHHHHHHH----Hc-------CCCeEEEeCCCChHHc---------CcccHHHHHHHhCCceeeecCCCH
Confidence 64 33445555443211 00 1234555554321221 125689999997 7777766553
Q ss_pred hhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 004862 520 YNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAP 599 (726)
Q Consensus 520 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~ 599 (726)
++.-. ++..+ +... .-.+++++.++|.+.
T Consensus 170 ~~~~~-----~l~~~-------------------------a~~~-~~~l~~~v~~~L~~~-------------------- 198 (235)
T PRK08084 170 EEKLQ-----ALQLR-------------------------ARLR-GFELPEDVGRFLLKR-------------------- 198 (235)
T ss_pred HHHHH-----HHHHH-------------------------HHHc-CCCCCHHHHHHHHHh--------------------
Confidence 22111 11110 1111 235899999999886
Q ss_pred ccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 600 IPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 600 ~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
++.+.|.|++++.... .+.+.....||.+.+.+++.
T Consensus 199 ~~~d~r~l~~~l~~l~-~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 199 LDREMRTLFMTLDQLD-RASITAQRKLTIPFVKEILK 234 (235)
T ss_pred hcCCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHc
Confidence 5689999999998753 34444455699988888764
No 155
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.5e-10 Score=110.62 Aligned_cols=168 Identities=23% Similarity=0.271 Sum_probs=92.9
Q ss_pred cCCccCchhHHHHHHHHHhCCCcc-cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccccee
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRK-NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASV 411 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~-~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~ 411 (726)
..+|.|.+.+|+||--+.+=..+- .+..| ..+....+||+||||||||.||++++..+...+|.. +..+|...+
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv----SSSDLvSKW 206 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV----SSSDLVSKW 206 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe----ehHHHHHHH
Confidence 346789988888875443211110 00111 112335699999999999999999998887555522 222332222
Q ss_pred eecCCCchhhhccCceeec---CCCeEEecccCcCCHH-----------HHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 412 IRDGSSREFYLEGGAMVLA---DGGVVCIDEFDKMRPE-----------DRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 412 ~~~~~~~~~~~~~G~l~la---~~gvl~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
..+. +- +....+.+| ...|+||||||.+... ...-++--|+ | .|. -+..+.|
T Consensus 207 mGES---Ek-LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-G------VG~---d~~gvLV 272 (439)
T KOG0739|consen 207 MGES---EK-LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-G------VGN---DNDGVLV 272 (439)
T ss_pred hccH---HH-HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-c------ccc---CCCceEE
Confidence 2111 00 111112232 3579999999987422 1122222221 1 111 1345889
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhc
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASA 537 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~ 537 (726)
++|||.|+- |..++.+||+-.+.++- | +..-+.+++++|...
T Consensus 273 LgATNiPw~-------------LDsAIRRRFekRIYIPL-P----e~~AR~~MF~lhlG~ 314 (439)
T KOG0739|consen 273 LGATNIPWV-------------LDSAIRRRFEKRIYIPL-P----EAHARARMFKLHLGD 314 (439)
T ss_pred EecCCCchh-------------HHHHHHHHhhcceeccC-C----cHHHhhhhheeccCC
Confidence 999997742 77899999996555542 2 222345566666543
No 156
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.3e-09 Score=117.89 Aligned_cols=134 Identities=30% Similarity=0.377 Sum_probs=81.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCC--CcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGS--SAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~--~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~ 444 (726)
-.+||+||||||||.||++++..+...++. +|... -++|..++-+||-+ .++ ...| ..|+||||||...
T Consensus 184 kGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF-----~qA--kk~a-P~IIFIDEiDAvG 255 (596)
T COG0465 184 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLF-----EQA--KKNA-PCIIFIDEIDAVG 255 (596)
T ss_pred cceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHH-----HHh--hccC-CCeEEEehhhhcc
Confidence 359999999999999999999998877664 22211 12344444444321 111 1122 3699999999974
Q ss_pred HHH--------------HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh--ccc
Q 004862 445 PED--------------RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL--SRF 508 (726)
Q Consensus 445 ~~~--------------~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll--~RF 508 (726)
... .+.|+.-|+--. -+..+-++||||.+. . +.++|+ -||
T Consensus 256 r~Rg~g~GggnderEQTLNQlLvEmDGF~-----------~~~gviviaaTNRpd--------V-----lD~ALlRpgRF 311 (596)
T COG0465 256 RQRGAGLGGGNDEREQTLNQLLVEMDGFG-----------GNEGVIVIAATNRPD--------V-----LDPALLRPGRF 311 (596)
T ss_pred cccCCCCCCCchHHHHHHHHHHhhhccCC-----------CCCceEEEecCCCcc--------c-----chHhhcCCCCc
Confidence 332 233444443211 134578999999651 1 445554 389
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcc
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASAD 538 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~ 538 (726)
|-.+.+. .| |...++.|++.|....
T Consensus 312 DRqI~V~-~P----Di~gRe~IlkvH~~~~ 336 (596)
T COG0465 312 DRQILVE-LP----DIKGREQILKVHAKNK 336 (596)
T ss_pred ceeeecC-Cc----chhhHHHHHHHHhhcC
Confidence 9666553 33 5666888888886643
No 157
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.94 E-value=1.2e-08 Score=111.04 Aligned_cols=158 Identities=14% Similarity=0.130 Sum_probs=95.9
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE------EeC-CCCCCcc
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV------YTS-GKGSSAA 405 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~------~~~-g~~~~~~ 405 (726)
.-++++.+..-..++.+|..+ .|++|+|+||||||++|+.++..+.... .++ ....+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 445667777777777777665 6899999999999999999987764211 010 1111111
Q ss_pred cccceeeecCCCchhhhccCce------e---ecCCCeEEecccCcCCHHH-HHHHHHHHhcce------Eee--ec-cc
Q 004862 406 GLTASVIRDGSSREFYLEGGAM------V---LADGGVVCIDEFDKMRPED-RVAIHEAMEQQT------ISI--AK-AG 466 (726)
Q Consensus 406 gl~~~~~~~~~~~~~~~~~G~l------~---la~~gvl~iDEi~~~~~~~-~~~L~~~me~~~------i~i--~~-~g 466 (726)
++..+... ....+...+|.+ . ...+.+++||||++.+.+. ...++.+||.+. +.+ .. .+
T Consensus 240 DFI~G~rP--~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~ 317 (459)
T PRK11331 240 DFIQGYRP--NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDE 317 (459)
T ss_pred HHhcccCC--CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccc
Confidence 11111111 111223334432 1 1235699999999998664 677888888541 221 12 12
Q ss_pred eEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEec
Q 004862 467 ITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVK 515 (726)
Q Consensus 467 ~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~ 515 (726)
....+|.++.||||+|... ++. ..+..+|++||..+-..+
T Consensus 318 e~f~iP~Nl~IIgTMNt~D------rs~---~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 318 ERFYVPENVYIIGLMNTAD------RSL---AVVDYALRRRFSFIDIEP 357 (459)
T ss_pred ccccCCCCeEEEEecCccc------cch---hhccHHHHhhhheEEecC
Confidence 3457799999999999642 111 248899999997655443
No 158
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.5e-09 Score=108.92 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=66.1
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCC-CCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCC-
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSG-KGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR- 444 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g-~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~- 444 (726)
..||||+||+|+|||.||+.+|+.+...+-.+. +..+.+|..+.-+..-.........+.+..|..||+||||+|++.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 369999999999999999999999987766543 222333322110000000001112344567889999999999985
Q ss_pred -------------HHHHHHHHHHHhcceEeeeccce
Q 004862 445 -------------PEDRVAIHEAMEQQTISIAKAGI 467 (726)
Q Consensus 445 -------------~~~~~~L~~~me~~~i~i~~~g~ 467 (726)
+.+|.+|+..+|--.|.+...|.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~ 341 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGS 341 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCC
Confidence 34689999999977776644333
No 159
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.94 E-value=1.4e-08 Score=112.82 Aligned_cols=187 Identities=13% Similarity=0.230 Sum_probs=109.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC----CcEEeCCCCCCcccccce---eeecCCCchhhhccCceeecCCCeEEeccc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP----IAVYTSGKGSSAAGLTAS---VIRDGSSREFYLEGGAMVLADGGVVCIDEF 440 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~----~~~~~~g~~~~~~gl~~~---~~~~~~~~~~~~~~G~l~la~~gvl~iDEi 440 (726)
-+++|+||||+|||+|++++++.+. +..|++. ..++.. ..+......+.. ....-.+++|||+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-----~~f~~~~~~~l~~~~~~~f~~-----~~~~~dvLiIDDi 211 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-----ELFTEHLVSAIRSGEMQRFRQ-----FYRNVDALFIEDI 211 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-----HHHHHHHHHHHhcchHHHHHH-----HcccCCEEEEcch
Confidence 3699999999999999999987542 2233221 111000 000000000100 1234569999999
Q ss_pred CcCCH--HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEecc
Q 004862 441 DKMRP--EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKD 516 (726)
Q Consensus 441 ~~~~~--~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d 516 (726)
+.+.. ..|+.++..+.... .. .-++|.|+|.+ ..+-..+.++|.+||. +++.+.+
T Consensus 212 q~l~~k~~~qeelf~l~N~l~----~~--------~k~IIlts~~~---------p~~l~~l~~rL~SR~~~Gl~~~l~~ 270 (445)
T PRK12422 212 EVFSGKGATQEEFFHTFNSLH----TE--------GKLIVISSTCA---------PQDLKAMEERLISRFEWGIAIPLHP 270 (445)
T ss_pred hhhcCChhhHHHHHHHHHHHH----HC--------CCcEEEecCCC---------HHHHhhhHHHHHhhhcCCeEEecCC
Confidence 99854 34666666654321 01 12455555521 1222347889999996 7777755
Q ss_pred CCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 004862 517 IRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGE 596 (726)
Q Consensus 517 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~ 596 (726)
+..++ +..++...-......+++++.++|...
T Consensus 271 pd~e~-------------------------------r~~iL~~k~~~~~~~l~~evl~~la~~----------------- 302 (445)
T PRK12422 271 LTKEG-------------------------------LRSFLERKAEALSIRIEETALDFLIEA----------------- 302 (445)
T ss_pred CCHHH-------------------------------HHHHHHHHHHHcCCCCCHHHHHHHHHh-----------------
Confidence 54222 112221111112346899999988775
Q ss_pred CCCccCChhHHHHHHHHH---HHHHhhhCCCcccHHHHHHHHHH
Q 004862 597 AAPIPITVRQLEAIVRLS---EALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 597 ~~~~~~t~R~L~~lirla---~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
+..++|+|++.+... .|.+.+..+ .++.+++.++++-
T Consensus 303 ---~~~dir~L~g~l~~l~~~~a~~~~~~~-~i~~~~~~~~l~~ 342 (445)
T PRK12422 303 ---LSSNVKSLLHALTLLAKRVAYKKLSHQ-LLYVDDIKALLHD 342 (445)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHH
Confidence 457889999888765 367777654 5899888888763
No 160
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.93 E-value=6.1e-08 Score=116.41 Aligned_cols=209 Identities=13% Similarity=0.110 Sum_probs=117.8
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCccccccee-
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASV- 411 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~- 411 (726)
..|+|.+...+.++-.|... ..-|++|+||||||||.+++.++......... .-.+.....+..+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH
Confidence 45889988877777666543 22589999999999999999998765321000 00000111111110
Q ss_pred e-ecCCCchhhhccCce----eecCCCeEEecccCcCCH--------HHHHHHHHHHhcceEeeeccceEEEeeCceEEE
Q 004862 412 I-RDGSSREFYLEGGAM----VLADGGVVCIDEFDKMRP--------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVL 478 (726)
Q Consensus 412 ~-~~~~~~~~~~~~G~l----~la~~gvl~iDEi~~~~~--------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ii 478 (726)
. .....|+|...-..+ ....+.|+|||||+.+-. +..+.|..++..|. +++|
T Consensus 247 ~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~---------------l~~I 311 (821)
T CHL00095 247 LAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE---------------LQCI 311 (821)
T ss_pred hccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC---------------cEEE
Confidence 0 011124443211111 112345899999986532 23455666665443 6789
Q ss_pred EecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHH
Q 004862 479 AAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQ 558 (726)
Q Consensus 479 aa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~ 558 (726)
+|||+.. ....+...++|.+||..+ .+.. ++.+.-..|.+.+...+..... ..++.+.+.....
T Consensus 312 gaTt~~e--------y~~~ie~D~aL~rRf~~I-~v~e-p~~~e~~aILr~l~~~~e~~~~------v~i~deal~~i~~ 375 (821)
T CHL00095 312 GATTLDE--------YRKHIEKDPALERRFQPV-YVGE-PSVEETIEILFGLRSRYEKHHN------LSISDKALEAAAK 375 (821)
T ss_pred EeCCHHH--------HHHHHhcCHHHHhcceEE-ecCC-CCHHHHHHHHHHHHHHHHHHcC------CCCCHHHHHHHHH
Confidence 9998631 111234578999999865 3333 3333334555444443332221 2378888888888
Q ss_pred HhHccCCC-CCCHHHHHHHHHHHHHHHH
Q 004862 559 YCRLECHP-RLSESASAKLRDQYVQIRK 585 (726)
Q Consensus 559 ~a~~~~~p-~ls~ea~~~l~~~y~~~R~ 585 (726)
.+.+++.- .+++.|.+.|-......|.
T Consensus 376 ls~~yi~~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 376 LSDQYIADRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred HhhccCccccCchHHHHHHHHHHHHHHh
Confidence 88776543 3677888888877655543
No 161
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.92 E-value=1.9e-08 Score=118.55 Aligned_cols=138 Identities=19% Similarity=0.254 Sum_probs=99.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeC--CCCCCcccccceeeecCCCchhhhc--cCceeecCCCeEEecccCcC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS--GKGSSAAGLTASVIRDGSSREFYLE--GGAMVLADGGVVCIDEFDKM 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~--g~~~~~~gl~~~~~~~~~~~~~~~~--~G~l~la~~gvl~iDEi~~~ 443 (726)
-++||.|.||+|||.|..++|+..+....-. ...+.-.+|.++-.+-..+|+|... |-.-.+.+||-+++||++..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 3799999999999999999999887653321 1122233445544433334554332 22224668999999999999
Q ss_pred CHHHHHHHHHHHhc-ceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeee
Q 004862 444 RPEDRVAIHEAMEQ-QTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIF 512 (726)
Q Consensus 444 ~~~~~~~L~~~me~-~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~ 512 (726)
+..+.+.|...++. ++..|.....+...+.+++|.||-||.+.. ..+..+|..+++||.+++
T Consensus 1624 SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qg-------gGRKgLPkSF~nRFsvV~ 1686 (4600)
T COG5271 1624 SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQG-------GGRKGLPKSFLNRFSVVK 1686 (4600)
T ss_pred HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcC-------CCcccCCHHHhhhhheEE
Confidence 99999999999996 555666666777788899999999994311 123349999999998877
No 162
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.92 E-value=8e-09 Score=116.01 Aligned_cols=190 Identities=17% Similarity=0.246 Sum_probs=108.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC------cEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI------AVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFD 441 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~------~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~ 441 (726)
-+++|+|+||+|||+|++++++.+.. ..|++.... ...+..+ .+......+. . .+..-.+++|||++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~-~~~~~~~-~~~~~~~~~~---~--~~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF-TNDFVNA-LRNNTMEEFK---E--KYRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-HHHHHHH-HHcCcHHHHH---H--HHhcCCEEEEehhh
Confidence 36999999999999999999876522 122211000 0000000 0000000010 0 11234599999999
Q ss_pred cCCHH--HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecC-CCCCcCCCccchhhhccCchhhhcccC--eeeEecc
Q 004862 442 KMRPE--DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAAN-PPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKD 516 (726)
Q Consensus 442 ~~~~~--~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~N-p~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d 516 (726)
.+... .++.|+..++... ..| ..++.++| ++ .+-..+.++|.|||. +++.+..
T Consensus 222 ~l~~~~~~~~~l~~~~n~l~----~~~--------~~iiits~~~p----------~~l~~l~~~l~SRl~~gl~v~i~~ 279 (450)
T PRK00149 222 FLAGKERTQEEFFHTFNALH----EAG--------KQIVLTSDRPP----------KELPGLEERLRSRFEWGLTVDIEP 279 (450)
T ss_pred hhcCCHHHHHHHHHHHHHHH----HCC--------CcEEEECCCCH----------HHHHHHHHHHHhHhcCCeeEEecC
Confidence 88543 4556666554321 111 12444454 32 111126788999996 6666644
Q ss_pred CCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 004862 517 IRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGE 596 (726)
Q Consensus 517 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~ 596 (726)
+..+. ...++. +.. .. ....+++++.++|...
T Consensus 280 pd~~~-----r~~il~----------------------~~~---~~-~~~~l~~e~l~~ia~~----------------- 311 (450)
T PRK00149 280 PDLET-----RIAILK----------------------KKA---EE-EGIDLPDEVLEFIAKN----------------- 311 (450)
T ss_pred CCHHH-----HHHHHH----------------------HHH---HH-cCCCCCHHHHHHHHcC-----------------
Confidence 43211 222222 111 11 1335899999999874
Q ss_pred CCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 597 AAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 597 ~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
+..++|.|++++....+.|.+..+ .|+.+.+.+++.-+
T Consensus 312 ---~~~~~R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~~ 349 (450)
T PRK00149 312 ---ITSNVRELEGALNRLIAYASLTGK-PITLELAKEALKDL 349 (450)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHh
Confidence 568999999999988888887754 58999999888754
No 163
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.92 E-value=6.6e-10 Score=102.53 Aligned_cols=117 Identities=26% Similarity=0.394 Sum_probs=73.2
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCC--chhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSS--REFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~--~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
|||+||||||||++++.+++.+...++..... .+......+... ..+..++. ..+...|++|||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~----~~~~~~~~~~~~~i~~~~~~~~--~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS----ELISSYAGDSEQKIRDFFKKAK--KSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT----HHHTSSTTHHHHHHHHHHHHHH--HTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccc----cccccccccccccccccccccc--ccccceeeeeccchhccccc
Confidence 69999999999999999999987655421100 000000000000 00000100 01125799999999998876
Q ss_pred -----------HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh-cccCeeeEec
Q 004862 448 -----------RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL-SRFDLIFIVK 515 (726)
Q Consensus 448 -----------~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll-~RFdli~~l~ 515 (726)
...|+..|+... +. ..++.+|++||.+ ..++++|+ +||+..+.++
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~~~----~~------~~~~~vI~ttn~~-------------~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDNPS----SK------NSRVIVIATTNSP-------------DKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHTTT----TT------SSSEEEEEEESSG-------------GGSCHHHHSTTSEEEEEE-
T ss_pred ccccccccccccceeeecccccc----cc------cccceeEEeeCCh-------------hhCCHhHHhCCCcEEEEcC
Confidence 677777777543 11 3468999999942 23888999 9999888764
No 164
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=3.8e-08 Score=107.79 Aligned_cols=206 Identities=14% Similarity=0.133 Sum_probs=120.2
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC-CCC--CCccccccee
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS-GKG--SSAAGLTASV 411 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~-g~~--~~~~gl~~~~ 411 (726)
++.||+.+++.+.-.+..|. -..++||+||||+|||++++++++......... +.. .....+.+..
T Consensus 18 ~iig~~~~~~~l~~~i~~~~-----------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~ 86 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNH-----------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS 86 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc
Confidence 57899999999888886651 125899999999999999999988754321110 000 0000111100
Q ss_pred eecCCCchh---hhccCce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCc
Q 004862 412 IRDGSSREF---YLEGGAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGR 487 (726)
Q Consensus 412 ~~~~~~~~~---~~~~G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~ 487 (726)
... .... .-+.... ..++..+++|||++.+....++.|+..||+. +..+.+|.++|.
T Consensus 87 ~~~--~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-------------~~~~~~Il~~~~---- 147 (367)
T PRK14970 87 NNS--VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-------------PAHAIFILATTE---- 147 (367)
T ss_pred CCC--HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCceEEEEEeCC----
Confidence 000 0010 0000011 2345679999999999998889999888752 223455555542
Q ss_pred CCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHH-hHccCCC
Q 004862 488 YDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQY-CRLECHP 566 (726)
Q Consensus 488 ~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~-a~~~~~p 566 (726)
...+.+++.+|+.. +.+..+. .+.+..++.. +++ -.-
T Consensus 148 ---------~~kl~~~l~sr~~~-v~~~~~~-------------------------------~~~l~~~l~~~~~~-~g~ 185 (367)
T PRK14970 148 ---------KHKIIPTILSRCQI-FDFKRIT-------------------------------IKDIKEHLAGIAVK-EGI 185 (367)
T ss_pred ---------cccCCHHHHhccee-EecCCcc-------------------------------HHHHHHHHHHHHHH-cCC
Confidence 12367788999853 3333322 2222333222 221 122
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 567 RLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 567 ~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
.+++++.+.|... ..+++|.+.+.++.....+. .+ |+.+|+...+.
T Consensus 186 ~i~~~al~~l~~~--------------------~~gdlr~~~~~lekl~~y~~---~~-it~~~v~~~~~ 231 (367)
T PRK14970 186 KFEDDALHIIAQK--------------------ADGALRDALSIFDRVVTFCG---KN-ITRQAVTENLN 231 (367)
T ss_pred CCCHHHHHHHHHh--------------------CCCCHHHHHHHHHHHHHhcC---CC-CCHHHHHHHhC
Confidence 4888999888875 34678888888765544432 33 88888876653
No 165
>PRK06893 DNA replication initiation factor; Validated
Probab=98.91 E-value=3.7e-08 Score=100.38 Aligned_cols=181 Identities=20% Similarity=0.222 Sum_probs=102.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC----CcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP----IAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~----~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~ 443 (726)
..++|+||||||||+|++++++.+. +..|.... ..... .... . . .+.+..+++|||++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~--------~~~~~---~~~~-~-~---~~~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS--------KSQYF---SPAV-L-E---NLEQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH--------Hhhhh---hHHH-H-h---hcccCCEEEEeChhhh
Confidence 4589999999999999999987642 22332110 00000 0000 0 0 1234469999999987
Q ss_pred C--HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEeccCCC
Q 004862 444 R--PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKDIRM 519 (726)
Q Consensus 444 ~--~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d~~~ 519 (726)
. +..+..|+..+.... ..| ...+|.|+|.+...|. ...++|.+|+. +++.+..+.+
T Consensus 104 ~~~~~~~~~l~~l~n~~~----~~~-------~~illits~~~p~~l~---------~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 104 IGNEEWELAIFDLFNRIK----EQG-------KTLLLISADCSPHALS---------IKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred cCChHHHHHHHHHHHHHH----HcC-------CcEEEEeCCCChHHcc---------ccchhHHHHHhcCCeeeCCCCCH
Confidence 5 334556777776421 111 1234455553211111 13367888864 6666654442
Q ss_pred hhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 004862 520 YNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAP 599 (726)
Q Consensus 520 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~ 599 (726)
++ ...++. +. +.. -.-.+++++.++|...
T Consensus 164 e~-----~~~iL~----------------------~~---a~~-~~l~l~~~v~~~L~~~-------------------- 192 (229)
T PRK06893 164 EQ-----KIIVLQ----------------------RN---AYQ-RGIELSDEVANFLLKR-------------------- 192 (229)
T ss_pred HH-----HHHHHH----------------------HH---HHH-cCCCCCHHHHHHHHHh--------------------
Confidence 22 111121 11 111 1235899999999886
Q ss_pred ccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 600 IPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 600 ~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
++.++|.|++++.... .+.+.....||...+++++.
T Consensus 193 ~~~d~r~l~~~l~~l~-~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 193 LDRDMHTLFDALDLLD-KASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred ccCCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHhc
Confidence 5688999999998654 34444345799988887763
No 166
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=8.2e-09 Score=112.74 Aligned_cols=146 Identities=20% Similarity=0.265 Sum_probs=76.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
-.|||.||||||||+||++++..+...++.. ++..+...+..+.+..-..+-..| ......|+||||||.+.+..
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~i----sApeivSGvSGESEkkiRelF~~A-~~~aPcivFiDeIDAI~pkR 298 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSI----SAPEIVSGVSGESEKKIRELFDQA-KSNAPCIVFIDEIDAITPKR 298 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhhhcCCceEee----cchhhhcccCcccHHHHHHHHHHH-hccCCeEEEeecccccccch
Confidence 4599999999999999999999988777632 111111111110000000000001 11224699999999997764
Q ss_pred HHHHHHHHhcceEee-----eccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh--cccCeeeEeccCCCh
Q 004862 448 RVAIHEAMEQQTISI-----AKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL--SRFDLIFIVKDIRMY 520 (726)
Q Consensus 448 ~~~L~~~me~~~i~i-----~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll--~RFdli~~l~d~~~~ 520 (726)
.. -.+-||.+.|.- ...+...+....+.||||||.|.. +.++|. -|||--+-+-- |
T Consensus 299 e~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs-------------lDpaLRRaGRFdrEI~l~v-P-- 361 (802)
T KOG0733|consen 299 EE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS-------------LDPALRRAGRFDREICLGV-P-- 361 (802)
T ss_pred hh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc-------------cCHHHhccccccceeeecC-C--
Confidence 32 223333322210 001111123456999999997621 455553 37984333322 2
Q ss_pred hhhHHHHHHHHHHhhhc
Q 004862 521 NQDKLIASHIIKIHASA 537 (726)
Q Consensus 521 ~~d~~i~~~il~~~~~~ 537 (726)
|..-+++||......
T Consensus 362 --~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 362 --SETAREEILRIICRG 376 (802)
T ss_pred --chHHHHHHHHHHHhh
Confidence 222355666665543
No 167
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.90 E-value=6.7e-08 Score=96.94 Aligned_cols=145 Identities=19% Similarity=0.156 Sum_probs=96.0
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCee
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLI 511 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli 511 (726)
.||+||||++.++-+.-..|+.++|.-- -..||.|+|.-.-...-......-..+++.||+|.- +
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~-I 361 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLL-I 361 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhhee-E
Confidence 4899999999999999999999998532 134677777511000111123344568999999984 4
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
+.....+++ .+++.|..--+.-.-.++++|...+...
T Consensus 362 irt~~y~~~-------------------------------e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~------------ 398 (456)
T KOG1942|consen 362 IRTLPYDEE-------------------------------EIRQIIKIRAQVEGLQVEEEALDLLAEI------------ 398 (456)
T ss_pred EeeccCCHH-------------------------------HHHHHHHHHHhhhcceecHHHHHHHHhh------------
Confidence 433333322 2222222111111235888998888775
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhh
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVS 641 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 641 (726)
....|.|-...|+-=|--+|++.+++.|..+|++++-.||..+
T Consensus 399 -------gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Da 441 (456)
T KOG1942|consen 399 -------GTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDA 441 (456)
T ss_pred -------ccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhc
Confidence 2335677777777777789999999999999999999998754
No 168
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=4.2e-08 Score=112.32 Aligned_cols=208 Identities=16% Similarity=0.174 Sum_probs=124.6
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE-EeC-CCCCCcccc--cce
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV-YTS-GKGSSAAGL--TAS 410 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~-~~~-g~~~~~~gl--~~~ 410 (726)
+++||+.+++.|.-++..| |-.+++||+||+|+|||++|+.+++.+.-.. ... |......+. .|.
T Consensus 25 dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ 93 (598)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence 5789999999988877766 2235699999999999999999988653210 001 100000110 000
Q ss_pred eee----------cC--CCc--h---hh--hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEe
Q 004862 411 VIR----------DG--SSR--E---FY--LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVL 471 (726)
Q Consensus 411 ~~~----------~~--~~~--~---~~--~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l 471 (726)
.+. ++ .++ + .. ..... ..++..|++|||++.|+...+++|+..||+-
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP------------- 159 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLSTAAFNALLKTLEEP------------- 159 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-------------
Confidence 000 00 000 0 00 00011 3456779999999999999999999999862
Q ss_pred eCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHH
Q 004862 472 NSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEEN 551 (726)
Q Consensus 472 ~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 551 (726)
+..+.+|.+++.. ..+.+.+.||+. .+.+.... .+
T Consensus 160 p~~~~fIl~tte~-------------~kll~tI~SRcq-~~~f~~l~-------------------------------~~ 194 (598)
T PRK09111 160 PPHVKFIFATTEI-------------RKVPVTVLSRCQ-RFDLRRIE-------------------------------AD 194 (598)
T ss_pred CCCeEEEEEeCCh-------------hhhhHHHHhhee-EEEecCCC-------------------------------HH
Confidence 2345555555421 126677999984 44444333 22
Q ss_pred HHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHH
Q 004862 552 WLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEV 631 (726)
Q Consensus 552 ~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv 631 (726)
.+.+++...-..-.-.+++++.+.|... ..+++|.+.+++..+.+++ ...|+.+||
T Consensus 195 el~~~L~~i~~kegi~i~~eAl~lIa~~--------------------a~Gdlr~al~~Ldkli~~g----~g~It~e~V 250 (598)
T PRK09111 195 VLAAHLSRIAAKEGVEVEDEALALIARA--------------------AEGSVRDGLSLLDQAIAHG----AGEVTAEAV 250 (598)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHhhc----CCCcCHHHH
Confidence 2333322211112335888888888876 3478899999886554442 357999999
Q ss_pred HHHHH
Q 004862 632 NEAVR 636 (726)
Q Consensus 632 ~~ai~ 636 (726)
.+.+.
T Consensus 251 ~~llg 255 (598)
T PRK09111 251 RDMLG 255 (598)
T ss_pred HHHhC
Confidence 87764
No 169
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.90 E-value=3.7e-07 Score=97.88 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=81.5
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEE-ECCCchhHHHHHHHHHHhCCCcEE-eCCCCCCcccccceee
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLL-LGDPSTAKSQFLKFVEKTAPIAVY-TSGKGSSAAGLTASVI 412 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL-~G~pGtGKt~la~~i~~~~~~~~~-~~g~~~~~~gl~~~~~ 412 (726)
++.|++.+++.+.-.+-.|. . .|++| +||||+|||++++++++.....+. ..+.. . . ....
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~-----------~-~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~--~--~~~i 84 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR-----------I-PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C--R--IDFV 84 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC-----------C-CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c--c--HHHH
Confidence 57899999888776665441 1 34454 899999999999999887644332 11111 0 0 0000
Q ss_pred ecCCCchhhhccCceeecCCCeEEecccCcC-CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCc
Q 004862 413 RDGSSREFYLEGGAMVLADGGVVCIDEFDKM-RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDL 491 (726)
Q Consensus 413 ~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~-~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~ 491 (726)
++. -..+.. ... ..+..++++|||++.+ ..+.+..|...|+.. +.++.+|.++|..
T Consensus 85 ~~~-l~~~~~-~~~-~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~------- 141 (316)
T PHA02544 85 RNR-LTRFAS-TVS-LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNK------- 141 (316)
T ss_pred HHH-HHHHHH-hhc-ccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCCh-------
Confidence 000 001100 000 1245679999999999 667788888888752 2457888899842
Q ss_pred cchhhhccCchhhhcccCee
Q 004862 492 KSAQDNIDLQTTILSRFDLI 511 (726)
Q Consensus 492 ~~~~~~~~l~~~Ll~RFdli 511 (726)
..+.+++.+||..+
T Consensus 142 ------~~l~~~l~sR~~~i 155 (316)
T PHA02544 142 ------NGIIEPLRSRCRVI 155 (316)
T ss_pred ------hhchHHHHhhceEE
Confidence 13778999999743
No 170
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.90 E-value=1.5e-08 Score=112.94 Aligned_cols=192 Identities=14% Similarity=0.216 Sum_probs=111.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC------CcEEeCCCCCCccccccee---eecCCCchhhhccCceeecCCCeEEec
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP------IAVYTSGKGSSAAGLTASV---IRDGSSREFYLEGGAMVLADGGVVCID 438 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~------~~~~~~g~~~~~~gl~~~~---~~~~~~~~~~~~~G~l~la~~gvl~iD 438 (726)
-+++|+|++|+|||+|++++++.+. +.+|.+. ..+.... .... .+.. +.-.-...+-.+|+||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-----~~f~~~~~~~l~~~-~~~~--~~~~~~~~~~dvLiID 213 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-----DEFARKAVDILQKT-HKEI--EQFKNEICQNDVLIID 213 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-----HHHHHHHHHHHHHh-hhHH--HHHHHHhccCCEEEEe
Confidence 3699999999999999999977432 1123211 0110000 0000 0000 0000002234599999
Q ss_pred ccCcCC--HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEe
Q 004862 439 EFDKMR--PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIV 514 (726)
Q Consensus 439 Ei~~~~--~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l 514 (726)
|++.+. +..++.|+..+.... .. .-++|.|+|.+ +.+...+.++|.+||. +++.+
T Consensus 214 Diq~l~~k~~~~e~lf~l~N~~~----~~--------~k~iIltsd~~---------P~~l~~l~~rL~SR~~~Gl~~~L 272 (450)
T PRK14087 214 DVQFLSYKEKTNEIFFTIFNNFI----EN--------DKQLFFSSDKS---------PELLNGFDNRLITRFNMGLSIAI 272 (450)
T ss_pred ccccccCCHHHHHHHHHHHHHHH----Hc--------CCcEEEECCCC---------HHHHhhccHHHHHHHhCCceecc
Confidence 999986 556777877776432 11 12466677632 1222347889999997 66666
Q ss_pred ccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhccc
Q 004862 515 KDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANET 594 (726)
Q Consensus 515 ~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~ 594 (726)
.++..++ -..+ +. +.+... .+...+++++.++|...
T Consensus 273 ~~pd~e~-r~~i----L~----------------------~~~~~~--gl~~~l~~evl~~Ia~~--------------- 308 (450)
T PRK14087 273 QKLDNKT-ATAI----IK----------------------KEIKNQ--NIKQEVTEEAINFISNY--------------- 308 (450)
T ss_pred CCcCHHH-HHHH----HH----------------------HHHHhc--CCCCCCCHHHHHHHHHc---------------
Confidence 5444222 1111 11 111111 12225899999999875
Q ss_pred CCCCCccCChhHHHHHHHHHHHHHhhhC-CCcccHHHHHHHHHH
Q 004862 595 GEAAPIPITVRQLEAIVRLSEALAKMKL-SHVATENEVNEAVRL 637 (726)
Q Consensus 595 ~~~~~~~~t~R~L~~lirla~a~A~l~~-~~~V~~~Dv~~ai~l 637 (726)
+.+++|.|++++....+.|.+.. ...|+.+.+.++++-
T Consensus 309 -----~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 309 -----YSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred -----cCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 56899999999987766676653 257999999888863
No 171
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.90 E-value=1.3e-08 Score=118.60 Aligned_cols=185 Identities=25% Similarity=0.301 Sum_probs=105.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCC--CcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCH
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGS--SAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP 445 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~--~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~ 445 (726)
++||+||||||||+++++++..+...++. ++... ...+..+...++ .+. .+ ......|+||||+|.+..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~----~f~-~a---~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD----MFE-QA---KKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHH----HHH-HH---HhcCCcEEEehhHhhhhh
Confidence 59999999999999999999988766542 11100 001111111110 000 00 011346999999999832
Q ss_pred H--------------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccC
Q 004862 446 E--------------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFD 509 (726)
Q Consensus 446 ~--------------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFd 509 (726)
. ..+.|+..|+.- .-+.++.+|||||++. .+.+++++ |||
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~-----------~~~~~vivIaaTN~p~-------------~lD~Al~RpgRfd 314 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPGRFD 314 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcc-----------cCCCCeeEEEecCChh-------------hcCHHHhCCcccc
Confidence 1 123334334321 0134688999999752 27788885 999
Q ss_pred eeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 004862 510 LIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRR 589 (726)
Q Consensus 510 li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~ 589 (726)
-.+.++.+..++ +..|+..|....+ +.+.+.- ..+.+.
T Consensus 315 r~i~v~~Pd~~~-----R~~Il~~~~~~~~------------------------l~~~~d~---~~la~~---------- 352 (644)
T PRK10733 315 RQVVVGLPDVRG-----REQILKVHMRRVP------------------------LAPDIDA---AIIARG---------- 352 (644)
T ss_pred eEEEcCCCCHHH-----HHHHHHHHhhcCC------------------------CCCcCCH---HHHHhh----------
Confidence 888765444322 3333443332211 1111111 111111
Q ss_pred hhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 590 QANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 590 ~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
....|.+++.++++.|..+|.-..+..|+.+|+.+|+.
T Consensus 353 ---------t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~ 390 (644)
T PRK10733 353 ---------TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 390 (644)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 23468888999998887777777778889999888875
No 172
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.90 E-value=1.5e-08 Score=121.20 Aligned_cols=211 Identities=11% Similarity=0.116 Sum_probs=119.7
Q ss_pred hhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccccc
Q 004862 331 KIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTA 409 (726)
Q Consensus 331 si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~ 409 (726)
.-...++|++..-..++-.|..+. ..|++|+||||||||++++.+++........ .-.+.....+..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~------------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRR------------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCC------------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 344568899887666666565442 2589999999999999999998876432100 000001110100
Q ss_pred eeee--cCCCchhhhccCc-ee----ecCCCeEEecccCcCCH-----HHH---HHHHHHHhcceEeeeccceEEEeeCc
Q 004862 410 SVIR--DGSSREFYLEGGA-MV----LADGGVVCIDEFDKMRP-----EDR---VAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 410 ~~~~--~~~~~~~~~~~G~-l~----la~~gvl~iDEi~~~~~-----~~~---~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
+... ....|+|.-.-.. +. ...+.|+||||++.+.. ..+ +.|..+|+.|.
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~--------------- 316 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE--------------- 316 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC---------------
Confidence 0000 0112333211000 00 11346999999999853 222 24777776654
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
+.+|+||++.. ....+...++|.+||.. +.+..+. .+.-..|-+.+...+.... ...++.+.|.
T Consensus 317 l~~IgaTT~~e--------~~~~~~~d~AL~rRf~~-i~v~eps-~~~~~~iL~~~~~~~e~~~------~v~i~d~al~ 380 (852)
T TIGR03345 317 LRTIAATTWAE--------YKKYFEKDPALTRRFQV-VKVEEPD-EETAIRMLRGLAPVLEKHH------GVLILDEAVV 380 (852)
T ss_pred eEEEEecCHHH--------HhhhhhccHHHHHhCeE-EEeCCCC-HHHHHHHHHHHHHhhhhcC------CCeeCHHHHH
Confidence 56899998631 11234578999999974 4555444 3323333333333222111 1457888888
Q ss_pred HHHHHhHccCCC-CCCHHHHHHHHHHHHHHH
Q 004862 555 RYIQYCRLECHP-RLSESASAKLRDQYVQIR 584 (726)
Q Consensus 555 ~yi~~a~~~~~p-~ls~ea~~~l~~~y~~~R 584 (726)
..+..+.+++.- .+++.|.++|-..-...|
T Consensus 381 ~~~~ls~ryi~~r~LPDKAIdlldea~a~~~ 411 (852)
T TIGR03345 381 AAVELSHRYIPGRQLPDKAVSLLDTACARVA 411 (852)
T ss_pred HHHHHcccccccccCccHHHHHHHHHHHHHH
Confidence 888888776543 578889988887654444
No 173
>PRK09087 hypothetical protein; Validated
Probab=98.89 E-value=2.9e-08 Score=100.65 Aligned_cols=176 Identities=14% Similarity=0.117 Sum_probs=103.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
..++|+|++|+|||+|++++++... ..|.+. ..+ +.+. +.-...++++|||++.++. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~-~~~i~~-----~~~---------~~~~------~~~~~~~~l~iDDi~~~~~-~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD-ALLIHP-----NEI---------GSDA------ANAAAEGPVLIEDIDAGGF-D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC-CEEecH-----HHc---------chHH------HHhhhcCeEEEECCCCCCC-C
Confidence 4599999999999999999886542 223211 001 0111 0111236899999998753 3
Q ss_pred HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEeccCCChhhhHH
Q 004862 448 RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKDIRMYNQDKL 525 (726)
Q Consensus 448 ~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d~~~~~~d~~ 525 (726)
+..|+..+..-. ....++|.|++.+...|. ...++|.|||. +++.+..+.+++
T Consensus 103 ~~~lf~l~n~~~------------~~g~~ilits~~~p~~~~---------~~~~dL~SRl~~gl~~~l~~pd~e~---- 157 (226)
T PRK09087 103 ETGLFHLINSVR------------QAGTSLLMTSRLWPSSWN---------VKLPDLKSRLKAATVVEIGEPDDAL---- 157 (226)
T ss_pred HHHHHHHHHHHH------------hCCCeEEEECCCChHHhc---------cccccHHHHHhCCceeecCCCCHHH----
Confidence 566666654211 112345555553212221 13578999997 677665544222
Q ss_pred HHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChh
Q 004862 526 IASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVR 605 (726)
Q Consensus 526 i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R 605 (726)
...+ |++.... ....+++++.++|.+. ++.++|
T Consensus 158 -~~~i----------------------L~~~~~~----~~~~l~~ev~~~La~~--------------------~~r~~~ 190 (226)
T PRK09087 158 -LSQV----------------------IFKLFAD----RQLYVDPHVVYYLVSR--------------------MERSLF 190 (226)
T ss_pred -HHHH----------------------HHHHHHH----cCCCCCHHHHHHHHHH--------------------hhhhHH
Confidence 1111 1122111 2335999999999886 447888
Q ss_pred HHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 606 QLEAIVRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 606 ~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
.++.++....+.|.... ..+|...+++++..+
T Consensus 191 ~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 191 AAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 88887766555555444 458988888877543
No 174
>PRK08727 hypothetical protein; Validated
Probab=98.88 E-value=3.6e-08 Score=100.69 Aligned_cols=178 Identities=14% Similarity=0.097 Sum_probs=105.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC----cEEeCCCCCCcccccceeeecCCCchhhhccCce-eecCCCeEEecccCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI----AVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAM-VLADGGVVCIDEFDK 442 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~----~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l-~la~~gvl~iDEi~~ 442 (726)
-.++|+|++|||||+|+++++..+.. ..|.+. ..+ ...+. ..+ .+.+-.+++|||++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-----~~~---------~~~~~---~~~~~l~~~dlLiIDDi~~ 104 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-----QAA---------AGRLR---DALEALEGRSLVALDGLES 104 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-----HHh---------hhhHH---HHHHHHhcCCEEEEeCccc
Confidence 35999999999999999998655432 223210 000 00000 000 122335899999999
Q ss_pred CC--HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhccc--CeeeEeccCC
Q 004862 443 MR--PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF--DLIFIVKDIR 518 (726)
Q Consensus 443 ~~--~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF--dli~~l~d~~ 518 (726)
+. +..+..|+..+.... ....++|.|+|-+...| ..+.++|.||| -+++.+.++.
T Consensus 105 l~~~~~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l---------~~~~~dL~SRl~~~~~~~l~~~~ 163 (233)
T PRK08727 105 IAGQREDEVALFDFHNRAR------------AAGITLLYTARQMPDGL---------ALVLPDLRSRLAQCIRIGLPVLD 163 (233)
T ss_pred ccCChHHHHHHHHHHHHHH------------HcCCeEEEECCCChhhh---------hhhhHHHHHHHhcCceEEecCCC
Confidence 85 445667777766432 11345788887432222 23568999998 4677665554
Q ss_pred ChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHH-hHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 004862 519 MYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQY-CRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEA 597 (726)
Q Consensus 519 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~-a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~ 597 (726)
+++ +..++.. |... .-.+++++.++|.+.
T Consensus 164 ~e~-------------------------------~~~iL~~~a~~~-~l~l~~e~~~~La~~------------------ 193 (233)
T PRK08727 164 DVA-------------------------------RAAVLRERAQRR-GLALDEAAIDWLLTH------------------ 193 (233)
T ss_pred HHH-------------------------------HHHHHHHHHHHc-CCCCCHHHHHHHHHh------------------
Confidence 322 2222221 2211 225899999999886
Q ss_pred CCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 598 APIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 598 ~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
.+.+.|.+.+++....+.|.... ..||...+.+.+.
T Consensus 194 --~~rd~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 194 --GERELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLE 229 (233)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 45778888888886665444443 4688888876653
No 175
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.88 E-value=2.3e-08 Score=112.93 Aligned_cols=190 Identities=15% Similarity=0.244 Sum_probs=110.6
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCC------cEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCc
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPI------AVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDK 442 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~------~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~ 442 (726)
+++|+|++|+|||+|++++++.+.. ..|++..... ..+..+ .++.....|.- .+.+-.+|+||||+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el~~a-l~~~~~~~f~~-----~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEFINS-IRDGKGDSFRR-----RYREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHH-HHhccHHHHHH-----HhhcCCEEEEehhcc
Confidence 4999999999999999999875421 2332210000 000001 01000001100 122346999999999
Q ss_pred CCHH--HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEeccCC
Q 004862 443 MRPE--DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKDIR 518 (726)
Q Consensus 443 ~~~~--~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d~~ 518 (726)
+... .++.|+..++... ..+..||.|+|... .+-..+.+.|.+||. +++.+..+.
T Consensus 389 l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P---------~eL~~l~~rL~SRf~~GLvv~I~~PD 447 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPP---------KQLVTLEDRLRNRFEWGLITDVQPPE 447 (617)
T ss_pred ccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCCh---------HhhhhccHHHHhhhhcCceEEcCCCC
Confidence 8543 3567777776432 11234666777421 122247789999997 666665443
Q ss_pred ChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 004862 519 MYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAA 598 (726)
Q Consensus 519 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~ 598 (726)
++ ....|+..+ ++. -...+++++.++|...
T Consensus 448 ~E-----tR~aIL~kk-------------------------a~~-r~l~l~~eVi~yLa~r------------------- 477 (617)
T PRK14086 448 LE-----TRIAILRKK-------------------------AVQ-EQLNAPPEVLEFIASR------------------- 477 (617)
T ss_pred HH-----HHHHHHHHH-------------------------HHh-cCCCCCHHHHHHHHHh-------------------
Confidence 22 233333221 111 2336889999998875
Q ss_pred CccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 599 PIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 599 ~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
+.-++|+|+.++..-.+.|.+.. ..|+.+.+.++++-+
T Consensus 478 -~~rnvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~ 515 (617)
T PRK14086 478 -ISRNIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDL 515 (617)
T ss_pred -ccCCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 45688999999887777777764 458888888777643
No 176
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.3e-08 Score=109.25 Aligned_cols=149 Identities=19% Similarity=0.286 Sum_probs=84.4
Q ss_pred ccCchhHHHHHHHHHhCCCcccCC-CCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec
Q 004862 336 IFGHDDVKKAVSCLLFGGSRKNLP-DGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD 414 (726)
Q Consensus 336 I~G~~~~k~aill~L~~~~~~~~~-~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~ 414 (726)
|-|.+.++.-+-++++...++.-- ...-++....|||+||||||||.||+++|+.+.-.+... + ...|..-.+.+
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV-K---GPELlNkYVGE 588 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV-K---GPELLNKYVGE 588 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee-c---CHHHHHHHhhh
Confidence 667899999998888766432100 001123345699999999999999999999877655410 0 01111111110
Q ss_pred CCC--chhhhccCceeecCCCeEEecccCcCCHH-----------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEec
Q 004862 415 GSS--REFYLEGGAMVLADGGVVCIDEFDKMRPE-----------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAA 481 (726)
Q Consensus 415 ~~~--~~~~~~~G~l~la~~gvl~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~ 481 (726)
.+. ......+ .-+...|+|+||||.|.+. ..+.|+.-|+-.. . ...+.|||||
T Consensus 589 SErAVR~vFqRA---R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~---------~--R~gV~viaAT 654 (802)
T KOG0733|consen 589 SERAVRQVFQRA---RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE---------E--RRGVYVIAAT 654 (802)
T ss_pred HHHHHHHHHHHh---hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc---------c--ccceEEEeec
Confidence 000 0000011 0122469999999998653 2345555554221 1 2247899999
Q ss_pred CCCCCcCCCccchhhhccCchhhhc--ccCeeeEec
Q 004862 482 NPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVK 515 (726)
Q Consensus 482 Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~ 515 (726)
|.|. -+.+++|+ |||-++++.
T Consensus 655 NRPD-------------iIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 655 NRPD-------------IIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred CCCc-------------ccchhhcCCCccCceeeec
Confidence 9762 14555553 899555443
No 177
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1e-07 Score=109.97 Aligned_cols=209 Identities=19% Similarity=0.177 Sum_probs=118.4
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE------eCCCCCC---
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY------TSGKGSS--- 403 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~------~~g~~~~--- 403 (726)
+.++.|++.+++.|.-++..+ |-.+++||+||||+|||++|+++++.+.-... .||.-..
T Consensus 15 f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred HhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 346889999999888777665 22368999999999999999999887643210 0110000
Q ss_pred -cccccceee-ecCC--Cc-----hhhhccC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 404 -AAGLTASVI-RDGS--SR-----EFYLEGG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 404 -~~gl~~~~~-~~~~--~~-----~~~~~~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
..|....+. -+.. .+ +...... .-..+...|++|||++.|+.+.+++|+..||+- +.
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~ 150 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PP 150 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-------------Cc
Confidence 000000000 0000 00 0000000 002345569999999999999999999999952 22
Q ss_pred ceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHH
Q 004862 474 RTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWL 553 (726)
Q Consensus 474 ~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L 553 (726)
.+.+|.+||-+ ..+.++|.+|+..+ .+...+ .+.+
T Consensus 151 ~tvfIL~t~~~-------------~~llpTIrSRc~~~-~f~~l~-------------------------------~~ei 185 (620)
T PRK14948 151 RVVFVLATTDP-------------QRVLPTIISRCQRF-DFRRIP-------------------------------LEAM 185 (620)
T ss_pred CeEEEEEeCCh-------------hhhhHHHHhheeEE-EecCCC-------------------------------HHHH
Confidence 34555555411 12667899998543 333222 2223
Q ss_pred HHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHH
Q 004862 554 KRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNE 633 (726)
Q Consensus 554 ~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ 633 (726)
.+++.+.-..-...+++++...|..+ ..+++|.+.++++.. +.+ ...++.+++.+
T Consensus 186 ~~~L~~ia~kegi~is~~al~~La~~--------------------s~G~lr~A~~lLekl---sL~--~~~It~e~V~~ 240 (620)
T PRK14948 186 VQHLSEIAEKESIEIEPEALTLVAQR--------------------SQGGLRDAESLLDQL---SLL--PGPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHH---Hhc--cCCCCHHHHHH
Confidence 33332211112234778888877775 336778888877532 222 23577777765
Q ss_pred HH
Q 004862 634 AV 635 (726)
Q Consensus 634 ai 635 (726)
.+
T Consensus 241 lv 242 (620)
T PRK14948 241 LL 242 (620)
T ss_pred Hh
Confidence 43
No 178
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.9e-08 Score=110.83 Aligned_cols=223 Identities=22% Similarity=0.265 Sum_probs=141.2
Q ss_pred ceEEEEC----CCchhHHHHHHHHHHhCC---------------C-----cEEeCCCCCCcccccceeeecCCCc-----
Q 004862 368 VNVLLLG----DPSTAKSQFLKFVEKTAP---------------I-----AVYTSGKGSSAAGLTASVIRDGSSR----- 418 (726)
Q Consensus 368 ~~vLL~G----~pGtGKt~la~~i~~~~~---------------~-----~~~~~g~~~~~~gl~~~~~~~~~~~----- 418 (726)
.|+.+.| .+|.+++..++.+....+ . .-++...+.....|.+++..++..|
T Consensus 132 ~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~ 211 (647)
T COG1067 132 QQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTT 211 (647)
T ss_pred hhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCC
Confidence 4566666 888999888775522211 0 1122233334445666666655433
Q ss_pred -hhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeec-----cceE---EEeeCceEEEEecCCCCCcCC
Q 004862 419 -EFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAK-----AGIT---TVLNSRTSVLAAANPPSGRYD 489 (726)
Q Consensus 419 -~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~-----~g~~---~~l~~~~~iiaa~Np~~g~~~ 489 (726)
.-..+||++..||+|||||||+..|....+..++.+|++++..+.- .|.. ...|.++.+|++.|+.
T Consensus 212 ~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~----- 286 (647)
T COG1067 212 GHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRE----- 286 (647)
T ss_pred CcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHH-----
Confidence 3457899999999999999999999988888889988876543311 1111 2357789999999852
Q ss_pred CccchhhhccCchhhhcc---cCeeeEeccCCC-hh-hhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHcc-
Q 004862 490 DLKSAQDNIDLQTTILSR---FDLIFIVKDIRM-YN-QDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLE- 563 (726)
Q Consensus 490 ~~~~~~~~~~l~~~Ll~R---Fdli~~l~d~~~-~~-~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~- 563 (726)
.-..+.+++-+| |.....+.+... .+ .-..+ ++.|.+...+.
T Consensus 287 ------~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~--------------------------~~~~~q~v~~d~ 334 (647)
T COG1067 287 ------DLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKL--------------------------VQFYVQELARDG 334 (647)
T ss_pred ------HHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHH--------------------------HHHHHHHHHhcC
Confidence 111233333344 444344444332 11 11122 22222222221
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 564 CHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 564 ~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
=-|.++.+|.+.|..+.. |.. +.....+.++|.|.++++.|--.|.++.++.++.+||++|++.
T Consensus 335 ~ip~~~~~Av~~li~~a~--R~A--------g~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 335 NIPHLDKDAVEELIREAA--RRA--------GDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred CCCCCCHHHHHHHHHHHH--Hhc--------cccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 346788888888877632 221 2345789999999999999999999999999999999999975
No 179
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.84 E-value=1.4e-07 Score=101.40 Aligned_cols=247 Identities=15% Similarity=0.126 Sum_probs=125.8
Q ss_pred chHHHHHHhh--cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCC
Q 004862 323 DAYKTVCSKI--APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGK 400 (726)
Q Consensus 323 ~~~~~l~~si--~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~ 400 (726)
...+.|+.|+ -|+-+.. ..|...|..++. .+..+.|++++||||||||+++.++...+ ...+|.
T Consensus 174 EWid~LlrSiG~~P~~~~~-r~k~~~L~rl~~----------fve~~~Nli~lGp~GTGKThla~~l~~~~---a~~sG~ 239 (449)
T TIGR02688 174 EWIDVLIRSIGYEPEGFEA-RQKLLLLARLLP----------LVEPNYNLIELGPKGTGKSYIYNNLSPYV---ILISGG 239 (449)
T ss_pred HHHHHHHHhcCCCcccCCh-HHHHHHHHhhHH----------HHhcCCcEEEECCCCCCHHHHHHHHhHHH---HHHcCC
Confidence 4567788886 4554432 222222222211 23344899999999999999999875431 111232
Q ss_pred CCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHH----HHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 401 GSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPE----DRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 401 ~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~----~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
..+.+.|...... -..|. ++.-.+++|||+..++.+ ....|...|++|.++ ++.. ...++++
T Consensus 240 f~T~a~Lf~~L~~--------~~lg~--v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fs--RG~~--~~~a~as 305 (449)
T TIGR02688 240 TITVAKLFYNIST--------RQIGL--VGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFT--RGDE--TKSSDAS 305 (449)
T ss_pred cCcHHHHHHHHHH--------HHHhh--hccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCcee--ccce--eeeeeeE
Confidence 2233333222111 11232 233459999999996543 347788889999955 5443 3445566
Q ss_pred EEEecCCCC--CcCCCc----cchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCH
Q 004862 477 VLAAANPPS--GRYDDL----KSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEE 550 (726)
Q Consensus 477 iiaa~Np~~--g~~~~~----~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 550 (726)
++--.|-.. ....+. ..+.+... ..|+++||.-.+.=.+.| +++...+.. ..-+.
T Consensus 306 ~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~-DsAflDRiH~yiPGWeip------k~~~e~~t~-----------~yGl~- 366 (449)
T TIGR02688 306 FVFLGNVPLTSEHMVKNSDLFSPLPEFMR-DSAFLDRIHGYLPGWEIP------KIRKEMFSN-----------GYGFV- 366 (449)
T ss_pred EEEEcccCCcchhhcCcccccccCChhhh-hhHHHHhhhccCCCCcCc------cCCHHHccc-----------CCcch-
Confidence 665556321 000000 01122222 345666665444222211 111100000 01111
Q ss_pred HHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhh-hCCCcccHH
Q 004862 551 NWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKM-KLSHVATEN 629 (726)
Q Consensus 551 ~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l-~~~~~V~~~ 629 (726)
.+++.++..+||+....+....--..+-..|.|.-.++-+..-++.|| .-...++.+
T Consensus 367 ----------------------~DylsE~l~~lR~~~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~e 424 (449)
T TIGR02688 367 ----------------------VDYFAEALRELREREYADIVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKE 424 (449)
T ss_pred ----------------------HHHHHHHHHHHHhhHHHHhhhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 234444444555432221111000123347889999999988888887 445678999
Q ss_pred HHHHHHHHH
Q 004862 630 EVNEAVRLF 638 (726)
Q Consensus 630 Dv~~ai~l~ 638 (726)
|+++.++..
T Consensus 425 e~~~~l~~A 433 (449)
T TIGR02688 425 EFTECLEPA 433 (449)
T ss_pred HHHHHHHHH
Confidence 988766543
No 180
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.8e-07 Score=107.90 Aligned_cols=207 Identities=14% Similarity=0.121 Sum_probs=122.3
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCC-Cc----EEeCCCCC------C
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAP-IA----VYTSGKGS------S 403 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~-~~----~~~~g~~~------~ 403 (726)
+|+||+.+++.+.-++-.|. -.+.+||+||+|+|||++|+.+++... .. ...||.-. .
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-----------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~ 86 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-----------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNE 86 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhc
Confidence 68899999999988887661 113389999999999999999988653 10 00011000 0
Q ss_pred cccccceeeecCC--C--chhh--h-ccCc-eeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 404 AAGLTASVIRDGS--S--REFY--L-EGGA-MVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 404 ~~gl~~~~~~~~~--~--~~~~--~-~~G~-l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
......... +.. . .+.. . +... -..++.-|++|||++.|+.+.+++|+..||+- +..+
T Consensus 87 ~~~~n~~~l-d~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-------------p~~t 152 (614)
T PRK14971 87 QRSYNIHEL-DAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-------------PSYA 152 (614)
T ss_pred CCCCceEEe-cccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-------------CCCe
Confidence 000000000 000 0 0000 0 0000 02345669999999999999999999999962 2234
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
.+|.+++. ...+.++|.||..+ +.+.. ++.+.+.+
T Consensus 153 ifIL~tt~-------------~~kIl~tI~SRc~i-v~f~~-------------------------------ls~~ei~~ 187 (614)
T PRK14971 153 IFILATTE-------------KHKILPTILSRCQI-FDFNR-------------------------------IQVADIVN 187 (614)
T ss_pred EEEEEeCC-------------chhchHHHHhhhhe-eecCC-------------------------------CCHHHHHH
Confidence 45555541 12477889999854 33332 33344444
Q ss_pred HHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 556 YIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 556 yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
|+.+.-..-.-.+++++.+.|... ..++.|.+.+++....+++. . .++.+++.+.+
T Consensus 188 ~L~~ia~~egi~i~~~al~~La~~--------------------s~gdlr~al~~Lekl~~y~~---~-~It~~~V~~~l 243 (614)
T PRK14971 188 HLQYVASKEGITAEPEALNVIAQK--------------------ADGGMRDALSIFDQVVSFTG---G-NITYKSVIENL 243 (614)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhcc---C-CccHHHHHHHh
Confidence 544322212335788888888875 34788999888866555442 2 37777776655
No 181
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.83 E-value=7.2e-09 Score=108.93 Aligned_cols=128 Identities=15% Similarity=0.181 Sum_probs=72.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCC---chhhhccCce--eecCCCeEEecccCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSS---REFYLEGGAM--VLADGGVVCIDEFDK 442 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~---~~~~~~~G~l--~la~~gvl~iDEi~~ 442 (726)
.-++|+||||||||++++++++.+.-.+... +...|.....-+++. ..|. .+... ......|+||||||.
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~v----sa~eL~sk~vGEsEk~IR~~F~-~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVM----SAGELESENAGEPGKLIRQRYR-EAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE----EHHHhhcCcCCcHHHHHHHHHH-HHHHHhhccCCCeEEEEehhhh
Confidence 5699999999999999999999887664431 111122111111100 0010 01100 011345999999998
Q ss_pred CCHH---------HH---HHHHHHHhcceEeeeccceE--EEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--
Q 004862 443 MRPE---------DR---VAIHEAMEQQTISIAKAGIT--TVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS-- 506 (726)
Q Consensus 443 ~~~~---------~~---~~L~~~me~~~i~i~~~g~~--~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~-- 506 (726)
+.+. .| ..|+..|++=+ .+.-.|.. ..-..++.||||||.+. .|.++|++
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~-~v~l~G~w~~~~~~~~V~VIaTTNrpd-------------~LDpALlRpG 289 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPT-NVSLGGDWREKEEIPRVPIIVTGNDFS-------------TLYAPLIRDG 289 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCc-cccccccccccccCCCceEEEeCCCcc-------------cCCHhHcCCC
Confidence 7542 11 24555555311 01111211 12345799999999642 28899999
Q ss_pred ccCeeeEe
Q 004862 507 RFDLIFIV 514 (726)
Q Consensus 507 RFdli~~l 514 (726)
|||-.+.+
T Consensus 290 RfDk~i~l 297 (413)
T PLN00020 290 RMEKFYWA 297 (413)
T ss_pred CCCceeCC
Confidence 99987643
No 182
>PRK04195 replication factor C large subunit; Provisional
Probab=98.82 E-value=7.3e-08 Score=109.12 Aligned_cols=118 Identities=20% Similarity=0.306 Sum_probs=70.6
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD 414 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~ 414 (726)
+++|++.++..+.-.+-... .| +...++||+||||||||++|+++++.....+.. ++++-.+.
T Consensus 15 dlvg~~~~~~~l~~~l~~~~-----~g---~~~~~lLL~GppG~GKTtla~ala~el~~~~ie---------lnasd~r~ 77 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWL-----KG---KPKKALLLYGPPGVGKTSLAHALANDYGWEVIE---------LNASDQRT 77 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHh-----cC---CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE---------Eccccccc
Confidence 47899998887766664331 11 113689999999999999999999987644331 11111110
Q ss_pred CC-Cchhh---hccCceeecCCCeEEecccCcCCH----HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCC
Q 004862 415 GS-SREFY---LEGGAMVLADGGVVCIDEFDKMRP----EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPP 484 (726)
Q Consensus 415 ~~-~~~~~---~~~G~l~la~~gvl~iDEi~~~~~----~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~ 484 (726)
.. -..+. .....+.-....+++|||+|.+.. .....|+..++. .++.+|.++|.+
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---------------~~~~iIli~n~~ 140 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---------------AKQPIILTANDP 140 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---------------CCCCEEEeccCc
Confidence 00 00000 000111102467999999999976 446777777763 234677788854
No 183
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.79 E-value=6.1e-08 Score=108.03 Aligned_cols=190 Identities=14% Similarity=0.185 Sum_probs=103.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC------CcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP------IAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFD 441 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~------~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~ 441 (726)
-+++|+|+||+|||+|++++++... +..|++.... ...+..+. +......+.. . ......+++|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f-~~~~~~~~-~~~~~~~f~~---~-~~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF-LNDLVDSM-KEGKLNEFRE---K-YRKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-HHHHHHHH-hcccHHHHHH---H-HHhcCCEEEEechh
Confidence 3699999999999999999987532 2233221100 00000010 0000001100 0 01134599999999
Q ss_pred cCCH--HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecC-CCCCcCCCccchhhhccCchhhhcccC--eeeEecc
Q 004862 442 KMRP--EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAAN-PPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKD 516 (726)
Q Consensus 442 ~~~~--~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~N-p~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d 516 (726)
.+.. ..+..|+..+..-. .. ...+|.++| ++ .+-..+.++|.|||. +++.+.+
T Consensus 205 ~l~~~~~~q~elf~~~n~l~----~~--------~k~iIitsd~~p----------~~l~~l~~rL~SR~~~gl~v~i~~ 262 (440)
T PRK14088 205 FLIGKTGVQTELFHTFNELH----DS--------GKQIVICSDREP----------QKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_pred hhcCcHHHHHHHHHHHHHHH----Hc--------CCeEEEECCCCH----------HHHHHHHHHHhhHHhcCceEeeCC
Confidence 8742 34555665554321 11 123444554 32 122336788999996 4554443
Q ss_pred CCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 004862 517 IRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGE 596 (726)
Q Consensus 517 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~ 596 (726)
+. .+ ....++.. . +.. -.-.+++++.++|.+.
T Consensus 263 pd-~e----~r~~IL~~----------------------~---~~~-~~~~l~~ev~~~Ia~~----------------- 294 (440)
T PRK14088 263 PD-EE----TRKKIARK----------------------M---LEI-EHGELPEEVLNFVAEN----------------- 294 (440)
T ss_pred CC-HH----HHHHHHHH----------------------H---HHh-cCCCCCHHHHHHHHhc-----------------
Confidence 33 22 12222221 1 111 1224888998888875
Q ss_pred CCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 597 AAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 597 ~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
++.++|+|+.++..-.+.|.+..+ .++.+.+.++++-
T Consensus 295 ---~~~~~R~L~g~l~~l~~~~~~~~~-~it~~~a~~~L~~ 331 (440)
T PRK14088 295 ---VDDNLRRLRGAIIKLLVYKETTGE-EVDLKEAILLLKD 331 (440)
T ss_pred ---cccCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 557899999999877777877654 5888888777763
No 184
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.77 E-value=4e-08 Score=109.03 Aligned_cols=189 Identities=16% Similarity=0.230 Sum_probs=107.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC------cEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI------AVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFD 441 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~------~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~ 441 (726)
-+++|+|+||+|||+|++++++.+.. .+|.++... ...+..+ ..+.....+. . .+..-.+++|||++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~-~~~~~~~-~~~~~~~~~~---~--~~~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF-TNDFVNA-LRNNKMEEFK---E--KYRSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH-HHHHHHH-HHcCCHHHHH---H--HHHhCCEEEEehhh
Confidence 36899999999999999999765421 122211000 0000000 0000000110 0 11234699999999
Q ss_pred cCCHH--HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecC-CCCCcCCCccchhhhccCchhhhcccC--eeeEecc
Q 004862 442 KMRPE--DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAAN-PPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKD 516 (726)
Q Consensus 442 ~~~~~--~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~N-p~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d 516 (726)
.+... .++.|+..++... .. ..++|.++| ++ .+-..+.++|.+||. +++.+..
T Consensus 210 ~l~~~~~~~~~l~~~~n~~~----~~--------~~~iiits~~~p----------~~l~~l~~~l~SRl~~g~~v~i~~ 267 (405)
T TIGR00362 210 FLAGKERTQEEFFHTFNALH----EN--------GKQIVLTSDRPP----------KELPGLEERLRSRFEWGLVVDIEP 267 (405)
T ss_pred hhcCCHHHHHHHHHHHHHHH----HC--------CCCEEEecCCCH----------HHHhhhhhhhhhhccCCeEEEeCC
Confidence 87543 4566666665321 11 123445555 22 122236788999997 5565544
Q ss_pred CCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 004862 517 IRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGE 596 (726)
Q Consensus 517 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~ 596 (726)
+. .+ ....++. +. ++. ....+++++.++|...
T Consensus 268 pd-~~----~r~~il~----------------------~~---~~~-~~~~l~~e~l~~ia~~----------------- 299 (405)
T TIGR00362 268 PD-LE----TRLAILQ----------------------KK---AEE-EGLELPDEVLEFIAKN----------------- 299 (405)
T ss_pred CC-HH----HHHHHHH----------------------HH---HHH-cCCCCCHHHHHHHHHh-----------------
Confidence 33 22 1222222 11 111 2346899999999875
Q ss_pred CCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 597 AAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 597 ~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
+..++|+|+.++....+.|.+.. ..|+.+.+.+++..
T Consensus 300 ---~~~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~ 336 (405)
T TIGR00362 300 ---IRSNVRELEGALNRLLAYASLTG-KPITLELAKEALKD 336 (405)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 56899999999998888887665 45898888887754
No 185
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.3e-08 Score=102.25 Aligned_cols=139 Identities=18% Similarity=0.303 Sum_probs=87.4
Q ss_pred CCCeEEecccCcCCH------------HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhc
Q 004862 431 DGGVVCIDEFDKMRP------------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNI 498 (726)
Q Consensus 431 ~~gvl~iDEi~~~~~------------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~ 498 (726)
+.||+||||||++.. ..|-.|+..+|-.+|+ .+-|...+ ..+.+||+.- | .+..-.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~-TKyG~VkT--dHILFIasGA-----F----h~sKPS 317 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVS-TKYGPVKT--DHILFIASGA-----F----HVAKPS 317 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceee-cccccccc--ceEEEEecCc-----e----ecCChh
Confidence 469999999999732 2466778888766654 34443322 1355666543 2 223334
Q ss_pred cCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHc-cCCCCCCHHHHHHHH
Q 004862 499 DLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRL-ECHPRLSESASAKLR 577 (726)
Q Consensus 499 ~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~-~~~p~ls~ea~~~l~ 577 (726)
+|-|.|--||.+.+.+.....++ ..+|+. .-...++++|...-+. -+.-.|+++|.+.|.
T Consensus 318 DLiPELQGRfPIRVEL~~Lt~~D-----f~rILt--------------ep~~sLikQY~aLlkTE~v~l~FtddaI~~iA 378 (444)
T COG1220 318 DLIPELQGRFPIRVELDALTKED-----FERILT--------------EPKASLIKQYKALLKTEGVELEFTDDAIKRIA 378 (444)
T ss_pred hcChhhcCCCceEEEcccCCHHH-----HHHHHc--------------CcchHHHHHHHHHHhhcCeeEEecHHHHHHHH
Confidence 57889999999999887776332 122221 1233567888776553 255579999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHH
Q 004862 578 DQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVR 612 (726)
Q Consensus 578 ~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lir 612 (726)
.....+.... -.+-.|.|..++.
T Consensus 379 eiA~~vN~~~------------ENIGARRLhTvlE 401 (444)
T COG1220 379 EIAYQVNEKT------------ENIGARRLHTVLE 401 (444)
T ss_pred HHHHHhcccc------------cchhHHHHHHHHH
Confidence 9876554332 2366777777764
No 186
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.75 E-value=5.8e-08 Score=116.47 Aligned_cols=204 Identities=15% Similarity=0.140 Sum_probs=104.2
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccc--cc
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGL--TA 409 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl--~~ 409 (726)
...++|++..-.-++-.|... ...|++|+||||||||++++.++.....+... .-.+.....+ ..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 345889988766665555443 22589999999999999999998876432100 0000010001 10
Q ss_pred eeeecCCCchhhhccC-ce---ee-cCCCeEEecccCcCCHH--------HHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 410 SVIRDGSSREFYLEGG-AM---VL-ADGGVVCIDEFDKMRPE--------DRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~G-~l---~l-a~~gvl~iDEi~~~~~~--------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
-+......|+|.-.-. .+ .. ...-|+||||++.+... .++.|..+++.| .+.
T Consensus 245 l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g---------------~l~ 309 (857)
T PRK10865 245 LVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG---------------ELH 309 (857)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC---------------CCe
Confidence 0000001223321100 01 01 12349999999998533 345555555544 367
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHH
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRY 556 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~y 556 (726)
+||||++.. ....+.+.++|.+||+.++ +. .|+.+.-..+-+.+...+.... ...++.+.+...
T Consensus 310 ~IgaTt~~e--------~r~~~~~d~al~rRf~~i~-v~-eP~~~~~~~iL~~l~~~~e~~~------~v~~~d~a~~~a 373 (857)
T PRK10865 310 CVGATTLDE--------YRQYIEKDAALERRFQKVF-VA-EPSVEDTIAILRGLKERYELHH------HVQITDPAIVAA 373 (857)
T ss_pred EEEcCCCHH--------HHHHhhhcHHHHhhCCEEE-eC-CCCHHHHHHHHHHHhhhhccCC------CCCcCHHHHHHH
Confidence 999998631 1123557899999999755 33 3333322333333322211111 123445555544
Q ss_pred HHHhHccCC-CCCCHHHHHHHHHH
Q 004862 557 IQYCRLECH-PRLSESASAKLRDQ 579 (726)
Q Consensus 557 i~~a~~~~~-p~ls~ea~~~l~~~ 579 (726)
+..+.+++. ..|++.|.+.+-..
T Consensus 374 ~~ls~ry~~~~~~pdkAi~LiD~a 397 (857)
T PRK10865 374 ATLSHRYIADRQLPDKAIDLIDEA 397 (857)
T ss_pred HHHhhccccCCCCChHHHHHHHHH
Confidence 344444332 24666666655443
No 187
>PRK05642 DNA replication initiation factor; Validated
Probab=98.73 E-value=1.7e-07 Score=95.76 Aligned_cols=179 Identities=17% Similarity=0.187 Sum_probs=101.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC----CcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP----IAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~----~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~ 443 (726)
.+++|+|++|+|||+|+++++.... +..|.+. ..+... ...+ . . .+.+..+++||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-----~~~~~~------~~~~-~--~--~~~~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-----AELLDR------GPEL-L--D--NLEQYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-----HHHHhh------hHHH-H--H--hhhhCCEEEEechhhh
Confidence 4789999999999999999875431 2233211 001000 0000 0 0 0122358999999987
Q ss_pred C--HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEeccCCC
Q 004862 444 R--PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKDIRM 519 (726)
Q Consensus 444 ~--~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d~~~ 519 (726)
. +..++.|+..+..-. ..+.++|.|+|.+.. +-..+.++|.|||. +++.+..+++
T Consensus 110 ~~~~~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~---------~l~~~~~~L~SRl~~gl~~~l~~~~~ 168 (234)
T PRK05642 110 AGKADWEEALFHLFNRLR------------DSGRRLLLAASKSPR---------ELPIKLPDLKSRLTLALVFQMRGLSD 168 (234)
T ss_pred cCChHHHHHHHHHHHHHH------------hcCCEEEEeCCCCHH---------HcCccCccHHHHHhcCeeeecCCCCH
Confidence 5 344567877775421 112335555552111 11124688999996 6776655543
Q ss_pred hhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 004862 520 YNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAP 599 (726)
Q Consensus 520 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~ 599 (726)
++ ...++ ++ .+... .-.+++++.++|.+.
T Consensus 169 e~-----~~~il----------------------~~---ka~~~-~~~l~~ev~~~L~~~-------------------- 197 (234)
T PRK05642 169 ED-----KLRAL----------------------QL---RASRR-GLHLTDEVGHFILTR-------------------- 197 (234)
T ss_pred HH-----HHHHH----------------------HH---HHHHc-CCCCCHHHHHHHHHh--------------------
Confidence 22 11111 11 12211 225899999999885
Q ss_pred ccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 600 IPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 600 ~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
++.++|.|++++..-.. +.+.....||..-+.+++
T Consensus 198 ~~~d~r~l~~~l~~l~~-~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 198 GTRSMSALFDLLERLDQ-ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred cCCCHHHHHHHHHHHHH-HHHHcCCcCCHHHHHHHh
Confidence 56899999999986543 444444568877776655
No 188
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.70 E-value=2.6e-07 Score=90.03 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=94.3
Q ss_pred HHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccc
Q 004862 329 CSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLT 408 (726)
Q Consensus 329 ~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~ 408 (726)
..+...+|+|+++.-.-+-+..-.| +-.|++|.||||||||+-+.++++.+-...|..| ...|+
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~----vLELN 85 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEA----VLELN 85 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhH----hhhcc
Confidence 3345567999998877766555444 2279999999999999999888776543333221 12344
Q ss_pred ceeeecCCC-----chhhhccCceee--cCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEec
Q 004862 409 ASVIRDGSS-----REFYLEGGAMVL--ADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAA 481 (726)
Q Consensus 409 ~~~~~~~~~-----~~~~~~~G~l~l--a~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~ 481 (726)
++-.|.-.. ..|. ...+.+ ....|+++||.|.|....|.+|.+.||--. ..+++.-||
T Consensus 86 ASdeRGIDvVRn~IK~FA--Q~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS-------------~ttRFalaC 150 (333)
T KOG0991|consen 86 ASDERGIDVVRNKIKMFA--QKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS-------------NTTRFALAC 150 (333)
T ss_pred CccccccHHHHHHHHHHH--HhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-------------ccchhhhhh
Confidence 443321100 0111 111222 223599999999999999999999999321 236777888
Q ss_pred CCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHh
Q 004862 482 NPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIH 534 (726)
Q Consensus 482 Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~ 534 (726)
|.. ..+-+|+-||.-+.-. ++-.|..+-.+++.+.
T Consensus 151 N~s-------------~KIiEPIQSRCAiLRy-----sklsd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 151 NQS-------------EKIIEPIQSRCAILRY-----SKLSDQQILKRLLEVA 185 (333)
T ss_pred cch-------------hhhhhhHHhhhHhhhh-----cccCHHHHHHHHHHHH
Confidence 842 2256677777753221 1223455555555443
No 189
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.68 E-value=5.8e-07 Score=93.98 Aligned_cols=203 Identities=14% Similarity=0.107 Sum_probs=113.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC-cEEeCC---CCCCccccc---ceeeecCCCch-----hh-hcc---CceeecC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI-AVYTSG---KGSSAAGLT---ASVIRDGSSRE-----FY-LEG---GAMVLAD 431 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~-~~~~~g---~~~~~~gl~---~~~~~~~~~~~-----~~-~~~---G~l~la~ 431 (726)
..++|+||+|+|||++++.+...... .+.... ...+...+. +....-+..+. +. +.. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999999887653 222111 001110000 00000000000 00 000 0001123
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCee
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLI 511 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli 511 (726)
..+++|||++.+++...+.|....+-.. .+ ...+.|+.+..|.... ... ..-..++.+|+...
T Consensus 124 ~~vliiDe~~~l~~~~~~~l~~l~~~~~-----~~-----~~~~~vvl~g~~~~~~------~l~-~~~~~~l~~r~~~~ 186 (269)
T TIGR03015 124 RALLVVDEAQNLTPELLEELRMLSNFQT-----DN-----AKLLQIFLVGQPEFRE------TLQ-SPQLQQLRQRIIAS 186 (269)
T ss_pred CeEEEEECcccCCHHHHHHHHHHhCccc-----CC-----CCeEEEEEcCCHHHHH------HHc-CchhHHHHhheeee
Confidence 3589999999999887777665443211 00 1234566666652100 000 00123566676655
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHc----cCCCCCCHHHHHHHHHHHHHHHHHH
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRL----ECHPRLSESASAKLRDQYVQIRKDM 587 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~----~~~p~ls~ea~~~l~~~y~~~R~~~ 587 (726)
+.+++. +.+.++.|+...-. .-.+.+++++.+.|.+.
T Consensus 187 ~~l~~l-------------------------------~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~-------- 227 (269)
T TIGR03015 187 CHLGPL-------------------------------DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF-------- 227 (269)
T ss_pred eeCCCC-------------------------------CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH--------
Confidence 555443 33334444332111 11246899999999886
Q ss_pred hhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 588 RRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 588 ~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
..+++|.+..+...+...|-.+..+.|+.+++.+|+.-+
T Consensus 228 ------------s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 228 ------------SRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred ------------cCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 347789999999999998888899999999999998643
No 190
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.67 E-value=4.7e-07 Score=100.63 Aligned_cols=223 Identities=17% Similarity=0.162 Sum_probs=138.4
Q ss_pred HHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCc
Q 004862 325 YKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSA 404 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~ 404 (726)
|.+.....+++++||+.+.+.|--++..+ |-.+--|+.||-|||||++||.+++.+.-.....+.....
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 34444456677899999999999999877 2224589999999999999999988764221011110000
Q ss_pred ----cccccee-----eecCC--Cc-----hhhhccC-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccce
Q 004862 405 ----AGLTASV-----IRDGS--SR-----EFYLEGG-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGI 467 (726)
Q Consensus 405 ----~gl~~~~-----~~~~~--~~-----~~~~~~G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~ 467 (726)
.+++.+. .-|.. +| +..-+.. +-+.+..-|.+|||+++|+....++||.-+|+-
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP--------- 146 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP--------- 146 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC---------
Confidence 0011000 00000 00 0000000 012344569999999999999999999988752
Q ss_pred EEEeeCce-EEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccc
Q 004862 468 TTVLNSRT-SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKV 546 (726)
Q Consensus 468 ~~~l~~~~-~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 546 (726)
|..+ -|+|||+|. .++..++||.- .|.+.
T Consensus 147 ----P~hV~FIlATTe~~--------------Kip~TIlSRcq-~f~fk------------------------------- 176 (515)
T COG2812 147 ----PSHVKFILATTEPQ--------------KIPNTILSRCQ-RFDFK------------------------------- 176 (515)
T ss_pred ----ccCeEEEEecCCcC--------------cCchhhhhccc-ccccc-------------------------------
Confidence 2233 467777652 38899999973 33232
Q ss_pred cCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcc
Q 004862 547 SKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVA 626 (726)
Q Consensus 547 ~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V 626 (726)
.++.+.+.+++.+.-.+=.....++|...|.+. ..++.|...+++..+.+++. ..|
T Consensus 177 ri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--------------------a~Gs~RDalslLDq~i~~~~----~~I 232 (515)
T COG2812 177 RLDLEEIAKHLAAILDKEGINIEEDALSLIARA--------------------AEGSLRDALSLLDQAIAFGE----GEI 232 (515)
T ss_pred CCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--------------------cCCChhhHHHHHHHHHHccC----Ccc
Confidence 233444444444433223335788888888775 34899999999987766543 679
Q ss_pred cHHHHHHHHHHHhhh
Q 004862 627 TENEVNEAVRLFTVS 641 (726)
Q Consensus 627 ~~~Dv~~ai~l~~~s 641 (726)
+.++|...+.+....
T Consensus 233 t~~~v~~~lG~~~~~ 247 (515)
T COG2812 233 TLESVRDMLGLTDIE 247 (515)
T ss_pred cHHHHHHHhCCCCHH
Confidence 999999887665543
No 191
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.66 E-value=2e-07 Score=110.36 Aligned_cols=143 Identities=17% Similarity=0.284 Sum_probs=102.8
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEe--CCCCCCcccccceeeecCCCchhhhccCceeec--CCCeEEecccCc
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT--SGKGSSAAGLTASVIRDGSSREFYLEGGAMVLA--DGGVVCIDEFDK 442 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~--~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la--~~gvl~iDEi~~ 442 (726)
..++||-||+.+|||.+..++++..++.+.- ....+......++.+.+. +|...++.|.++-| .|--+++||++.
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd-~G~lsFkEGvLVeAlR~GyWIVLDELNL 966 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDD-DGSLSFKEGVLVEALRRGYWIVLDELNL 966 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecC-CCceeeehhHHHHHHhcCcEEEeecccc
Confidence 4689999999999999999999998876543 222222233333444432 45566677877654 566899999999
Q ss_pred CCHHHHHHHHHHHhc-ceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 443 MRPEDRVAIHEAMEQ-QTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 443 ~~~~~~~~L~~~me~-~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
.|.++.++|.+.+++ +++.|........-+.++++.||.|||.|.-+ +..++.++..||- -+.+.|.|
T Consensus 967 ApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgG-------RK~LSrAFRNRFl-E~hFddip 1035 (4600)
T COG5271 967 APTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGG-------RKGLSRAFRNRFL-EMHFDDIP 1035 (4600)
T ss_pred CcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccc-------hHHHHHHHHhhhH-hhhcccCc
Confidence 999999999999995 66666655555556678999999999865433 3458889999984 33334544
No 192
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=3.3e-07 Score=100.16 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=89.2
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE---EeCCCC-------
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV---YTSGKG------- 401 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~---~~~g~~------- 401 (726)
.+.+|+||+.+++.+.-++..+.......+ .+-.+.+||+||||+|||++|+.+++.+.-.. ..+|.=
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 456799999999998888876532110011 11235599999999999999999977542110 000000
Q ss_pred -CCcccccceeeecCC-C--c---hhhhcc-CceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 402 -SSAAGLTASVIRDGS-S--R---EFYLEG-GAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 402 -~~~~gl~~~~~~~~~-~--~---~~~~~~-G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
.+..++.. +..+.. . . +..-.. -.-..++..|++|||++.|++..+++|+..||+-. +.
T Consensus 81 ~~~hpD~~~-i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~------------~~ 147 (394)
T PRK07940 81 AGTHPDVRV-VAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP------------PR 147 (394)
T ss_pred cCCCCCEEE-eccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CC
Confidence 00000000 000000 0 0 000000 00012345599999999999999999999998632 11
Q ss_pred ceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 474 RTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 474 ~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
.+.|++|+||. .+.++++||+- .+.+..++
T Consensus 148 ~~fIL~a~~~~--------------~llpTIrSRc~-~i~f~~~~ 177 (394)
T PRK07940 148 TVWLLCAPSPE--------------DVLPTIRSRCR-HVALRTPS 177 (394)
T ss_pred CeEEEEECChH--------------HChHHHHhhCe-EEECCCCC
Confidence 24567777642 37889999984 55555544
No 193
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.66 E-value=1.5e-07 Score=112.06 Aligned_cols=150 Identities=21% Similarity=0.251 Sum_probs=81.8
Q ss_pred CccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccccceee
Q 004862 335 SIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASVI 412 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~~ 412 (726)
+|.|.+.+++.+.-.+..... ........+....++||+||||||||+++++++......++. .+. .+....
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~-----~i~~~~- 252 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGP-----EIMSKY- 252 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecH-----HHhccc-
Confidence 356887777665433321100 000000112223579999999999999999999987665442 111 000000
Q ss_pred ecCCCchhhh-ccCcee---ecCCCeEEecccCcCCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 413 RDGSSREFYL-EGGAMV---LADGGVVCIDEFDKMRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 413 ~~~~~~~~~~-~~G~l~---la~~gvl~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
.++... ....+. .....++||||+|.+.+ ..+..|+..|+.-. . ...+.|
T Consensus 253 ----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~----~-------~~~viv 317 (733)
T TIGR01243 253 ----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK----G-------RGRVIV 317 (733)
T ss_pred ----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc----c-------CCCEEE
Confidence 000000 000000 11246999999988743 24566777776321 1 235789
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCC
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIR 518 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~ 518 (726)
|+|+|++. .+++++.+ |||..+.+..+.
T Consensus 318 I~atn~~~-------------~ld~al~r~gRfd~~i~i~~P~ 347 (733)
T TIGR01243 318 IGATNRPD-------------ALDPALRRPGRFDREIVIRVPD 347 (733)
T ss_pred EeecCChh-------------hcCHHHhCchhccEEEEeCCcC
Confidence 99999652 25667765 899877765543
No 194
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.4e-07 Score=92.80 Aligned_cols=93 Identities=30% Similarity=0.387 Sum_probs=56.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCc------eeec---CCCeEEecc
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGA------MVLA---DGGVVCIDE 439 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~------l~la---~~gvl~iDE 439 (726)
.|||+||||||||+|++++++....++.. -.++.++. -.+..|. +.+| ...|+||||
T Consensus 191 gvllygppg~gktml~kava~~t~a~fir-vvgsefvq-------------kylgegprmvrdvfrlakenapsiifide 256 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIR-VVGSEFVQ-------------KYLGEGPRMVRDVFRLAKENAPSIIFIDE 256 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheee-eccHHHHH-------------HHhccCcHHHHHHHHHHhccCCcEEEeeh
Confidence 49999999999999999998765443321 00111100 0011111 1222 246999999
Q ss_pred cCcC-----------CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC
Q 004862 440 FDKM-----------RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP 483 (726)
Q Consensus 440 i~~~-----------~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np 483 (726)
+|.+ +.+.|-.|++.+.+-- |- .-.+++.||.|||.
T Consensus 257 idaiatkrfdaqtgadrevqril~ellnqmd------gf--dq~~nvkvimatnr 303 (408)
T KOG0727|consen 257 IDAIATKRFDAQTGADREVQRILIELLNQMD------GF--DQTTNVKVIMATNR 303 (408)
T ss_pred hhhHhhhhccccccccHHHHHHHHHHHHhcc------Cc--CcccceEEEEecCc
Confidence 9985 3456777777776421 11 12456889999995
No 195
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.64 E-value=2.8e-07 Score=111.11 Aligned_cols=208 Identities=14% Similarity=0.150 Sum_probs=110.9
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccccce-e
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTAS-V 411 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~-~ 411 (726)
..++|++..-+-++-.|.... .-|++|+||||||||++++.++......... ...+.....+..+ .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 348899887666666665442 2578999999999999999998765432100 0000011001000 0
Q ss_pred e-ecCCCchhhhcc-Ccee---e-cCCCeEEecccCcCCH--------HHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 412 I-RDGSSREFYLEG-GAMV---L-ADGGVVCIDEFDKMRP--------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 412 ~-~~~~~~~~~~~~-G~l~---l-a~~gvl~iDEi~~~~~--------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
. .....++|...- ..+. . ..+.|+||||++.+.. +..+.|..+++.+ ++++
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g---------------~i~~ 305 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG---------------ELHC 305 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC---------------ceEE
Confidence 0 000112221100 0010 1 1245999999998852 2234444444332 4679
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHH
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYI 557 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi 557 (726)
|+|||+. .....+.+.++|.+||..+. +..+ +.+.-..|-+.+........ ...++.+.+..-+
T Consensus 306 IgaTt~~--------e~r~~~~~d~al~rRf~~i~-v~~p-~~~~~~~iL~~~~~~~e~~~------~v~~~d~~i~~~~ 369 (852)
T TIGR03346 306 IGATTLD--------EYRKYIEKDAALERRFQPVF-VDEP-TVEDTISILRGLKERYEVHH------GVRITDPAIVAAA 369 (852)
T ss_pred EEeCcHH--------HHHHHhhcCHHHHhcCCEEE-eCCC-CHHHHHHHHHHHHHHhcccc------CCCCCHHHHHHHH
Confidence 9999863 11122557899999998754 4433 33322333332222211111 1346677777777
Q ss_pred HHhHccCCC-CCCHHHHHHHHHHHHHHH
Q 004862 558 QYCRLECHP-RLSESASAKLRDQYVQIR 584 (726)
Q Consensus 558 ~~a~~~~~p-~ls~ea~~~l~~~y~~~R 584 (726)
..+.+++.- .+++.|.++|-..-...|
T Consensus 370 ~ls~~yi~~r~lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 370 TLSHRYITDRFLPDKAIDLIDEAAARIR 397 (852)
T ss_pred HhccccccccCCchHHHHHHHHHHHHHH
Confidence 777665544 467788887776654443
No 196
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.61 E-value=1.2e-07 Score=95.71 Aligned_cols=173 Identities=19% Similarity=0.287 Sum_probs=95.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC----C--CcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA----P--IAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFD 441 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~----~--~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~ 441 (726)
-+++|+|++|+|||+|++++++.. | +.+|.+... +..-.....++.....+. -.+..-.+++||+++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~--f~~~~~~~~~~~~~~~~~-----~~~~~~DlL~iDDi~ 107 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE--FIREFADALRDGEIEEFK-----DRLRSADLLIIDDIQ 107 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH--HHHHHHHHHHTTSHHHHH-----HHHCTSSEEEEETGG
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH--HHHHHHHHHHcccchhhh-----hhhhcCCEEEEecch
Confidence 469999999999999999997643 1 123321100 000000011110000010 012345699999999
Q ss_pred cCCHHH--HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC-CCCcCCCccchhhhccCchhhhcccC--eeeEecc
Q 004862 442 KMRPED--RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP-PSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKD 516 (726)
Q Consensus 442 ~~~~~~--~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np-~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d 516 (726)
.+.... |+.|+..++.-. .. .-++|.|++. | . +-..+.+.|.|||. +++.+..
T Consensus 108 ~l~~~~~~q~~lf~l~n~~~----~~--------~k~li~ts~~~P-~---------~l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 108 FLAGKQRTQEELFHLFNRLI----ES--------GKQLILTSDRPP-S---------ELSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp GGTTHHHHHHHHHHHHHHHH----HT--------TSEEEEEESS-T-T---------TTTTS-HHHHHHHHCSEEEEE--
T ss_pred hhcCchHHHHHHHHHHHHHH----hh--------CCeEEEEeCCCC-c---------cccccChhhhhhHhhcchhhcCC
Confidence 997664 778887776532 11 2245555543 3 1 12237889999998 6777654
Q ss_pred CCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 004862 517 IRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGE 596 (726)
Q Consensus 517 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~ 596 (726)
+.++. ...++. +. +.. ....+++++.++|.+.
T Consensus 166 pd~~~-----r~~il~----------------------~~---a~~-~~~~l~~~v~~~l~~~----------------- 197 (219)
T PF00308_consen 166 PDDED-----RRRILQ----------------------KK---AKE-RGIELPEEVIEYLARR----------------- 197 (219)
T ss_dssp --HHH-----HHHHHH----------------------HH---HHH-TT--S-HHHHHHHHHH-----------------
T ss_pred CCHHH-----HHHHHH----------------------HH---HHH-hCCCCcHHHHHHHHHh-----------------
Confidence 43221 111221 11 111 2335999999999886
Q ss_pred CCCccCChhHHHHHHHHHHHHHhh
Q 004862 597 AAPIPITVRQLEAIVRLSEALAKM 620 (726)
Q Consensus 597 ~~~~~~t~R~L~~lirla~a~A~l 620 (726)
++.++|.|+.++..-.+++++
T Consensus 198 ---~~~~~r~L~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 198 ---FRRDVRELEGALNRLDAYAQL 218 (219)
T ss_dssp ---TTSSHHHHHHHHHHHHHHHHH
T ss_pred ---hcCCHHHHHHHHHHHHHHhhc
Confidence 567999999999988887764
No 197
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.3e-07 Score=89.28 Aligned_cols=135 Identities=24% Similarity=0.298 Sum_probs=78.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE-EeCCCCCCcccccceeeecCCCchhhhccCceeecC---CCeEEecccCcC-
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV-YTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLAD---GGVVCIDEFDKM- 443 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~-~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~---~gvl~iDEi~~~- 443 (726)
.+||+||||||||.||++++....-.+ .++| ..|....+. .|.. .....+++|. ..++|.||||.+
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsg-----selvqk~ig---egsr-mvrelfvmarehapsiifmdeidsig 253 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG-----SELVQKYIG---EGSR-MVRELFVMAREHAPSIIFMDEIDSIG 253 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEech-----HHHHHHHhh---hhHH-HHHHHHHHHHhcCCceEeeecccccc
Confidence 499999999999999999987553222 2221 111111110 0100 0111233332 469999999987
Q ss_pred ----------CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCee
Q 004862 444 ----------RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLI 511 (726)
Q Consensus 444 ----------~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli 511 (726)
+.+.|..+++.+.|- .|-. ...++.||.|||... -+.++||+ |.|--
T Consensus 254 s~r~e~~~ggdsevqrtmlellnql------dgfe--atknikvimatnrid-------------ild~allrpgridrk 312 (404)
T KOG0728|consen 254 SSRVESGSGGDSEVQRTMLELLNQL------DGFE--ATKNIKVIMATNRID-------------ILDPALLRPGRIDRK 312 (404)
T ss_pred cccccCCCCccHHHHHHHHHHHHhc------cccc--cccceEEEEeccccc-------------cccHhhcCCCccccc
Confidence 456788888888752 1211 134678999999631 14455553 67766
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcc
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASAD 538 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~ 538 (726)
+.++++.. .-+..|+++|....
T Consensus 313 iefp~p~e-----~ar~~ilkihsrkm 334 (404)
T KOG0728|consen 313 IEFPPPNE-----EARLDILKIHSRKM 334 (404)
T ss_pred ccCCCCCH-----HHHHHHHHHhhhhh
Confidence 66655443 33556777776543
No 198
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=98.60 E-value=4.2e-06 Score=90.78 Aligned_cols=251 Identities=18% Similarity=0.191 Sum_probs=146.5
Q ss_pred cCcchHHHHHHhhc--CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe
Q 004862 320 SQPDAYKTVCSKIA--PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT 397 (726)
Q Consensus 320 ~~~~~~~~l~~si~--p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~ 397 (726)
......+.|+.|+- |+-+.. ..|..+|.-|+--+. .+.|++=.||.|||||.+-+- ++|.+..+
T Consensus 170 T~eEWiD~LlrS~G~eP~~~~~-r~Kl~~L~RLiPlVE----------~N~NliELgPrGTGKS~vy~e---iSp~~~li 235 (457)
T PF13337_consen 170 TTEEWIDLLLRSIGYEPSGFSE-RQKLLLLARLIPLVE----------RNYNLIELGPRGTGKSYVYKE---ISPYGILI 235 (457)
T ss_pred CHHHHHHHHHHhcCCCccccCH-HHHHHHHHhHHHhcc----------cccceEEEcCCCCCceeehhh---cCcccEEE
Confidence 34456788999874 554433 456666666654433 348999999999999999654 56778888
Q ss_pred CCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCC---HHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 398 SGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR---PEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 398 ~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~---~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
+|...+.+.|..... ++ +.|.+..- .++++||+..+. ++....|...||+|.++ +++ .+..+.
T Consensus 236 SGG~~T~A~LFyn~~----~~----~~GlV~~~--D~VafDEv~~i~f~d~d~i~imK~YMesG~fs--RG~--~~i~a~ 301 (457)
T PF13337_consen 236 SGGQVTVAKLFYNMS----TG----QIGLVGRW--DVVAFDEVAGIKFKDKDEIQIMKDYMESGSFS--RGK--EEINAD 301 (457)
T ss_pred ECCCcchHHheeecc----CC----cceeeeec--cEEEEEeccCcccCChHHHHHHHHHHhcccee--ecc--cccccc
Confidence 877777666654322 22 34554444 389999999885 55558889999999965 444 356778
Q ss_pred eEEEEecCCCCC--cCCCc----cchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccC
Q 004862 475 TSVLAAANPPSG--RYDDL----KSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSK 548 (726)
Q Consensus 475 ~~iiaa~Np~~g--~~~~~----~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 548 (726)
++++-..|.... ..... ..+.+... ..|+++||..++.=.+.| .+....+. ...-+
T Consensus 302 as~vf~GNi~~~v~~~~~~~~lf~~lP~~~~-DsAflDRiH~~iPGWeiP------k~~~e~~t-----------~~~gl 363 (457)
T PF13337_consen 302 ASMVFVGNINQSVENMLKTSHLFEPLPEEMR-DSAFLDRIHGYIPGWEIP------KIRPEMFT-----------NGYGL 363 (457)
T ss_pred eeEEEEcCcCCcchhccccchhhhhcCHHHH-HHHHHhHhheeccCcccc------ccCHHHcc-----------CCcee
Confidence 888888886411 11000 11222222 567788876655433332 11110000 00122
Q ss_pred CHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhC-CCccc
Q 004862 549 EENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKL-SHVAT 627 (726)
Q Consensus 549 ~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~-~~~V~ 627 (726)
..+.|..++ .+||+....+....--..+-..+.|.-.++-|++-++.||-. ...++
T Consensus 364 ~~Dy~aE~l-----------------------~~LR~~~~~~~~~~~~~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~ 420 (457)
T PF13337_consen 364 IVDYFAEIL-----------------------HELRKQSYSDAVDKYFKLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFT 420 (457)
T ss_pred eHHHHHHHH-----------------------HHHHHHHHHHHHHhhEeeCCCcchhhHHHHHHHHHHHHHhhCCCCCCC
Confidence 333333333 333332211100000011234788999999999988888744 45788
Q ss_pred HHHHHHHHHHHh
Q 004862 628 ENEVNEAVRLFT 639 (726)
Q Consensus 628 ~~Dv~~ai~l~~ 639 (726)
.+|+++.++..-
T Consensus 421 ~ee~~~~l~~A~ 432 (457)
T PF13337_consen 421 KEELEECLRPAL 432 (457)
T ss_pred HHHHHHHHHHHH
Confidence 888887776543
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=98.56 E-value=2.4e-06 Score=100.64 Aligned_cols=181 Identities=17% Similarity=0.128 Sum_probs=107.8
Q ss_pred ceEEEEC--CCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCC-----CchhhhccCceeecCCCeEEeccc
Q 004862 368 VNVLLLG--DPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGS-----SREFYLEGGAMVLADGGVVCIDEF 440 (726)
Q Consensus 368 ~~vLL~G--~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~-----~~~~~~~~G~l~la~~gvl~iDEi 440 (726)
.|-+.-| |++.|||++|+++++.+.... .......++|+-.+... ...+... ..+.-++..|++|||+
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~----~~~~~lElNASd~rgid~IR~iIk~~a~~-~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGEN----WRHNFLELNASDERGINVIREKVKEFART-KPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhccc----ccCeEEEEeCCCcccHHHHHHHHHHHHhc-CCcCCCCCEEEEEECc
Confidence 4557778 999999999999998762210 01122233333211100 0011000 0010012359999999
Q ss_pred CcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCCh
Q 004862 441 DKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMY 520 (726)
Q Consensus 441 ~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~ 520 (726)
|.|+.+.|++|+..||+- +..+++|.+||++ ..+.++|.||+. ++.+.++++
T Consensus 640 D~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~-------------~kIi~tIrSRC~-~i~F~~ls~- 691 (846)
T PRK04132 640 DALTQDAQQALRRTMEMF-------------SSNVRFILSCNYS-------------SKIIEPIQSRCA-IFRFRPLRD- 691 (846)
T ss_pred ccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCCh-------------hhCchHHhhhce-EEeCCCCCH-
Confidence 999999999999999952 2357888889864 237789999984 444544442
Q ss_pred hhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCc
Q 004862 521 NQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPI 600 (726)
Q Consensus 521 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~ 600 (726)
.. +...+.+.-.+-...+++++...|... .
T Consensus 692 ---~~---------------------------i~~~L~~I~~~Egi~i~~e~L~~Ia~~--------------------s 721 (846)
T PRK04132 692 ---ED---------------------------IAKRLRYIAENEGLELTEEGLQAILYI--------------------A 721 (846)
T ss_pred ---HH---------------------------HHHHHHHHHHhcCCCCCHHHHHHHHHH--------------------c
Confidence 12 222222211111224778888888775 3
Q ss_pred cCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 601 PITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 601 ~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
.+++|...+++..+.+. ...|+.+++..+..
T Consensus 722 ~GDlR~AIn~Lq~~~~~-----~~~It~~~V~~~~~ 752 (846)
T PRK04132 722 EGDMRRAINILQAAAAL-----DDKITDENVFLVAS 752 (846)
T ss_pred CCCHHHHHHHHHHHHHh-----cCCCCHHHHHHHhC
Confidence 47889998988755432 24688888876553
No 200
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.5e-06 Score=93.82 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=40.9
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCC
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
...++||+.++..+.-++..| |..+-+||+||+|+|||++|+.+++.+.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 346899999999999999877 3334599999999999999999877653
No 201
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.54 E-value=5.6e-07 Score=94.71 Aligned_cols=97 Identities=25% Similarity=0.264 Sum_probs=57.1
Q ss_pred CeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC----CCCcCCCccchhhhccCchhhhccc
Q 004862 433 GVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP----PSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 433 gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np----~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
|||||||++.++-+.-..|..+||..- -..||-|||. ..|. ....-..+|..||+|+
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~~--------------sPiiIlATNRg~~~irGt-----~~~sphGiP~DlLDRl 340 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESEL--------------SPIIILATNRGITKIRGT-----DIISPHGIPLDLLDRL 340 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTT-----S-EEETT--HHHHTTE
T ss_pred ceEEecchhhccHHHHHHHHHHhcCCC--------------CcEEEEecCceeeeccCc-----cCcCCCCCCcchHhhc
Confidence 899999999999999999999999643 1247778885 1221 2233456899999998
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHH
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQY 580 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y 580 (726)
|++...+...++ ...|+..+... -...++++|.+.|....
T Consensus 341 -lII~t~py~~~e-----i~~Il~iR~~~--------------------------E~v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 341 -LIIRTKPYSEEE-----IKQILKIRAKE--------------------------EDVEISEDALDLLTKIG 380 (398)
T ss_dssp -EEEEE----HHH-----HHHHHHHHHHH--------------------------CT--B-HHHHHHHHHHH
T ss_pred -EEEECCCCCHHH-----HHHHHHhhhhh--------------------------hcCcCCHHHHHHHHHHh
Confidence 666554444222 22333333221 23468999999998763
No 202
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.7e-07 Score=92.90 Aligned_cols=135 Identities=27% Similarity=0.367 Sum_probs=76.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecC---CCeEEecccCcC--
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLAD---GGVVCIDEFDKM-- 443 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~---~gvl~iDEi~~~-- 443 (726)
.|||+||||||||..||++++.....+.- -.++ .|....+. .|.... ...+.+|. .-++|+||||.+
T Consensus 213 gvllygppgtgktl~aravanrtdacfir-vigs---elvqkyvg---egarmv-relf~martkkaciiffdeidaigg 284 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIR-VIGS---ELVQKYVG---EGARMV-RELFEMARTKKACIIFFDEIDAIGG 284 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEe-ehhH---HHHHHHhh---hhHHHH-HHHHHHhcccceEEEEeeccccccC
Confidence 49999999999999999999866544321 0010 01000000 011000 01122232 358999999986
Q ss_pred ---------CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccC--e
Q 004862 444 ---------RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFD--L 510 (726)
Q Consensus 444 ---------~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFd--l 510 (726)
+.+.|-.+++.+.|-- |- .-..++.|+.|||.|. .+.++|++ |.| +
T Consensus 285 arfddg~ggdnevqrtmleli~qld------gf--dprgnikvlmatnrpd-------------tldpallrpgrldrkv 343 (435)
T KOG0729|consen 285 ARFDDGAGGDNEVQRTMLELINQLD------GF--DPRGNIKVLMATNRPD-------------TLDPALLRPGRLDRKV 343 (435)
T ss_pred ccccCCCCCcHHHHHHHHHHHHhcc------CC--CCCCCeEEEeecCCCC-------------CcCHhhcCCcccccce
Confidence 3456888888886521 10 1123577999999752 14555543 555 5
Q ss_pred eeEeccCCChhhhHHHHHHHHHHhhhccc
Q 004862 511 IFIVKDIRMYNQDKLIASHIIKIHASADA 539 (726)
Q Consensus 511 i~~l~d~~~~~~d~~i~~~il~~~~~~~~ 539 (726)
-|-++|.. =+.||+++|.....
T Consensus 344 ef~lpdle-------grt~i~kihaksms 365 (435)
T KOG0729|consen 344 EFGLPDLE-------GRTHIFKIHAKSMS 365 (435)
T ss_pred eccCCccc-------ccceeEEEeccccc
Confidence 56565543 35677777765543
No 203
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.8e-06 Score=90.59 Aligned_cols=138 Identities=20% Similarity=0.247 Sum_probs=79.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeec-CCCchhhhccCceeecCCCeEEecccCc----
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRD-GSSREFYLEGGAMVLADGGVVCIDEFDK---- 442 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~-~~~~~~~~~~G~l~la~~gvl~iDEi~~---- 442 (726)
-|||++||||||||++|+-++..++-..- ..++...+.|.+..+.. ..-..|.-. ...|-++||||.|.
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA-~mTGGDVAPlG~qaVTkiH~lFDWakk-----S~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYA-IMTGGDVAPLGAQAVTKIHKLFDWAKK-----SRRGLLLFIDEADAFLCE 458 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCcee-hhcCCCccccchHHHHHHHHHHHHHhh-----cccceEEEehhhHHHHHH
Confidence 48999999999999999999988765432 22222222222211110 001233211 11234789999875
Q ss_pred -----CCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccC
Q 004862 443 -----MRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDI 517 (726)
Q Consensus 443 -----~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~ 517 (726)
|+.+.+.+|...+= +.|.. ..++.++-|+|.|. .|..+.-+|||-++.++-
T Consensus 459 RnktymSEaqRsaLNAlLf-------RTGdq---SrdivLvlAtNrpg-------------dlDsAV~DRide~veFpL- 514 (630)
T KOG0742|consen 459 RNKTYMSEAQRSALNALLF-------RTGDQ---SRDIVLVLATNRPG-------------DLDSAVNDRIDEVVEFPL- 514 (630)
T ss_pred hchhhhcHHHHHHHHHHHH-------Hhccc---ccceEEEeccCCcc-------------chhHHHHhhhhheeecCC-
Confidence 67777776665542 22221 23577788888762 266788899997666544
Q ss_pred CChhhhHHHHHHHHHHhh
Q 004862 518 RMYNQDKLIASHIIKIHA 535 (726)
Q Consensus 518 ~~~~~d~~i~~~il~~~~ 535 (726)
|.+++-..|-...++.+.
T Consensus 515 PGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 515 PGEEERFKLLNLYLNKYI 532 (630)
T ss_pred CChHHHHHHHHHHHHHHh
Confidence 444444444444444443
No 204
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.5e-07 Score=105.15 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=100.2
Q ss_pred chHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccc-cCcceEEEECCCchhHHHHHHHHHHhCCCcE--EeCC
Q 004862 323 DAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKL-RGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV--YTSG 399 (726)
Q Consensus 323 ~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~-r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~--~~~g 399 (726)
..+..|.+.+-..|.||+++-.||..++.... .|... .++.-+||.||+|+|||.||++++...-.+. ++.-
T Consensus 551 ~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr-----~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri 625 (898)
T KOG1051|consen 551 ERLKKLEERLHERVIGQDEAVAAIAAAIRRSR-----AGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL 625 (898)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-----cccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe
Confidence 35567888899999999999999998887652 12222 3668899999999999999999998764331 1100
Q ss_pred CCCCc------ccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 400 KGSSA------AGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 400 ~~~~~------~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
..+.+ .|.....+.. .+-..-.+++.....-|++||||++..++.+..|+++|+.|+++-. .|....+ .
T Consensus 626 Dmse~~evskligsp~gyvG~---e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs-~Gr~Vd~-k 700 (898)
T KOG1051|consen 626 DMSEFQEVSKLIGSPPGYVGK---EEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDS-HGREVDF-K 700 (898)
T ss_pred chhhhhhhhhccCCCcccccc---hhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccC-CCcEeec-c
Confidence 00000 0000000100 0001112334445567999999999999999999999999998643 3444444 3
Q ss_pred ceEEEEecCC
Q 004862 474 RTSVLAAANP 483 (726)
Q Consensus 474 ~~~iiaa~Np 483 (726)
++.||.|+|-
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6889999985
No 205
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.3e-07 Score=102.12 Aligned_cols=171 Identities=23% Similarity=0.283 Sum_probs=95.2
Q ss_pred cCCccCchhHHHHHHHHHhCCCc-ccCCCCccccCc-ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccce
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGD-VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTAS 410 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~-~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~ 410 (726)
.-+|.|.+.+|+++.-+.+=... .....| .|.. -.+||.||||+|||+|+++||..+...++.- ++..|+..
T Consensus 152 ~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~i----SassLtsK 225 (428)
T KOG0740|consen 152 WDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNI----SASSLTSK 225 (428)
T ss_pred ccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeec----cHHHhhhh
Confidence 45688999999887544331111 111111 1211 2599999999999999999998887666522 33344443
Q ss_pred eeecCCCchhhhccCcee---ecCCCeEEecccCcCCHH--------HHHHHHHHHhcceEeeeccceEEEeeCceEEEE
Q 004862 411 VIRDGSSREFYLEGGAMV---LADGGVVCIDEFDKMRPE--------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLA 479 (726)
Q Consensus 411 ~~~~~~~~~~~~~~G~l~---la~~gvl~iDEi~~~~~~--------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iia 479 (726)
+..+. +..+.+ .+. ....+|+||||+|.+=.+ .+-...+++- ...|....-+.++.||+
T Consensus 226 ~~Ge~---eK~vra-lf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLi------q~~~~~s~~~drvlvig 295 (428)
T KOG0740|consen 226 YVGES---EKLVRA-LFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLL------QFDGKNSAPDDRVLVIG 295 (428)
T ss_pred ccChH---HHHHHH-HHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHh------hhccccCCCCCeEEEEe
Confidence 33221 111110 011 123579999999986211 1111222221 12222233345899999
Q ss_pred ecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHH
Q 004862 480 AANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKI 533 (726)
Q Consensus 480 a~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~ 533 (726)
|||.|+- +..+++.||.=++. .+.|+.+....+-.+++..
T Consensus 296 aTN~P~e-------------~Dea~~Rrf~kr~y-iplPd~etr~~~~~~ll~~ 335 (428)
T KOG0740|consen 296 ATNRPWE-------------LDEAARRRFVKRLY-IPLPDYETRSLLWKQLLKE 335 (428)
T ss_pred cCCCchH-------------HHHHHHHHhhceee-ecCCCHHHHHHHHHHHHHh
Confidence 9997632 67788889985554 4555555445555555544
No 206
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.2e-07 Score=98.92 Aligned_cols=154 Identities=19% Similarity=0.268 Sum_probs=87.0
Q ss_pred CccCchhHHHHHHHHHhCCCcc-cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRK-NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 413 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~-~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~ 413 (726)
+|.|+.++|+++.-.+.-.++- ..-....+|-...|||+||||||||.||.+++..++-.+.. -+| ..|....+.
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis-vKG---PElL~KyIG 743 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS-VKG---PELLSKYIG 743 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE-ecC---HHHHHHHhc
Confidence 4778888999887666433211 11122346666789999999999999999999888766541 111 011111111
Q ss_pred cCCCc--hhhhccCceeecCCCeEEecccCcCCHH-----------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEe
Q 004862 414 DGSSR--EFYLEGGAMVLADGGVVCIDEFDKMRPE-----------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAA 480 (726)
Q Consensus 414 ~~~~~--~~~~~~G~l~la~~gvl~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa 480 (726)
..+.+ ....++ ..|...|+|+||||.+.|. .-+.|+.-|+--+ .+ ..+.|+||
T Consensus 744 aSEq~vR~lF~rA---~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E----------gl-~GV~i~aa 809 (952)
T KOG0735|consen 744 ASEQNVRDLFERA---QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE----------GL-DGVYILAA 809 (952)
T ss_pred ccHHHHHHHHHHh---hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc----------cc-ceEEEEEe
Confidence 00000 000011 2455679999999998764 2345555554211 11 24678888
Q ss_pred cCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCCh
Q 004862 481 ANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMY 520 (726)
Q Consensus 481 ~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~ 520 (726)
|..|. -+.++||+ |+|-.+. -+.|++
T Consensus 810 TsRpd-------------liDpALLRpGRlD~~v~-C~~P~~ 837 (952)
T KOG0735|consen 810 TSRPD-------------LIDPALLRPGRLDKLVY-CPLPDE 837 (952)
T ss_pred cCCcc-------------ccCHhhcCCCccceeee-CCCCCc
Confidence 87541 15666664 7884332 344433
No 207
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=98.41 E-value=2.2e-05 Score=88.57 Aligned_cols=250 Identities=16% Similarity=0.173 Sum_probs=142.6
Q ss_pred cchHHHHHHhh--cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCC
Q 004862 322 PDAYKTVCSKI--APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSG 399 (726)
Q Consensus 322 ~~~~~~l~~si--~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g 399 (726)
....+.|+.|+ -|+-+. +..|..+|.-|+--+. .+.|++=.||-|||||++.+ +.+|.+..++|
T Consensus 180 dEWid~LlrSiG~eP~~~~-~r~K~~~L~RliPlVE----------~N~Nl~ELgPrgTGKS~~y~---eiSp~~~liSG 245 (675)
T TIGR02653 180 DEWIDVLLRSVGMEPTNLE-RRTKWHLLTRLIPLVE----------NNYNLCELGPRGTGKSHVYK---ECSPNSILMSG 245 (675)
T ss_pred HHHHHHHHHhcCCCccccC-HHHHHHHHHhhhhhcc----------cccceEEECCCCCCcceeee---ccCCceEEEEC
Confidence 35567788876 455443 3566666666654433 34899999999999999977 57888988888
Q ss_pred CCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC---CHHHHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 400 KGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM---RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 400 ~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~---~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
...+.+.|+.... ++ +.|.+.+- .++++||+..+ +++....|...|++|.++ +++. ...+.++
T Consensus 246 G~~T~A~LFyn~~----~~----~~GlVg~~--D~VaFDEva~i~f~d~d~v~imK~YM~sG~Fs--RG~~--~~~a~as 311 (675)
T TIGR02653 246 GQTTVANLFYNMS----TR----QIGLVGMW--DVVAFDEVAGIEFKDKDGVQIMKDYMASGSFA--RGKE--SIEGKAS 311 (675)
T ss_pred CccchhHeeEEcC----CC----ceeEEeec--cEEEEeeccccccCCHHHHHHHHHHhhcCccc--cccc--cccccee
Confidence 7777666644322 22 24444433 48999999886 345556788889999954 5553 4456666
Q ss_pred EEEecCCCCC--cCCC----ccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCH
Q 004862 477 VLAAANPPSG--RYDD----LKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEE 550 (726)
Q Consensus 477 iiaa~Np~~g--~~~~----~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 550 (726)
++--.|-... .... ...+.+..+-..++++||.-.+.=.+.| +++...+.. ..-+.
T Consensus 312 ~vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yiPGWeiP------k~~~e~~t~-----------~yGl~- 373 (675)
T TIGR02653 312 IVFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYIPGWEIP------KMRPEYFTN-----------RYGFI- 373 (675)
T ss_pred EEEEcccCCchHHHhhcccccccCChhhcccchHHHHhhccCcCCcCc------cCCHHHccc-----------CCcch-
Confidence 6665553210 0000 0011112222346666665444222222 111110000 01122
Q ss_pred HHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhh-hCCCcccHH
Q 004862 551 NWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKM-KLSHVATEN 629 (726)
Q Consensus 551 ~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l-~~~~~V~~~ 629 (726)
.+++.++..+||+....+..+.--..+-..+.|.-.++-|..-++.|| .-...++.+
T Consensus 374 ----------------------~DylsE~l~~lR~~~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~e 431 (675)
T TIGR02653 374 ----------------------VDYLAEYMREMRKRSFADAIDRFFKLGNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKD 431 (675)
T ss_pred ----------------------HHHHHHHHHHHHhhhHHHHHHhhEecCCCCchhhHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 233444444444432211100000123457899999999999898888 556779999
Q ss_pred HHHHHHHHHh
Q 004862 630 EVNEAVRLFT 639 (726)
Q Consensus 630 Dv~~ai~l~~ 639 (726)
|++++++...
T Consensus 432 e~e~~l~~Al 441 (675)
T TIGR02653 432 DVRECLTYAM 441 (675)
T ss_pred HHHHHHHHHH
Confidence 9998775543
No 208
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.39 E-value=5.6e-06 Score=89.55 Aligned_cols=193 Identities=15% Similarity=0.220 Sum_probs=110.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC----c--EEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI----A--VYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFD 441 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~----~--~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~ 441 (726)
-+++|+|++|.|||+|++++.+.+-. . +|.+. ..+..-.....++.....|. . .. +-.+++||+++
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s--e~f~~~~v~a~~~~~~~~Fk--~---~y-~~dlllIDDiq 185 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS--EDFTNDFVKALRDNEMEKFK--E---KY-SLDLLLIDDIQ 185 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH--HHHHHHHHHHHHhhhHHHHH--H---hh-ccCeeeechHh
Confidence 57999999999999999999664421 1 12110 00000000001110000010 0 01 34589999999
Q ss_pred cCCHH--HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEeccC
Q 004862 442 KMRPE--DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKDI 517 (726)
Q Consensus 442 ~~~~~--~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d~ 517 (726)
.+..+ .|+.++.....=. ..| . +||.|+..+ +.+-..+.+.|.|||. +++.+.++
T Consensus 186 ~l~gk~~~qeefFh~FN~l~----~~~-------k-qIvltsdr~---------P~~l~~~~~rL~SR~~~Gl~~~I~~P 244 (408)
T COG0593 186 FLAGKERTQEEFFHTFNALL----ENG-------K-QIVLTSDRP---------PKELNGLEDRLRSRLEWGLVVEIEPP 244 (408)
T ss_pred HhcCChhHHHHHHHHHHHHH----hcC-------C-EEEEEcCCC---------chhhccccHHHHHHHhceeEEeeCCC
Confidence 97654 3555555443210 111 1 455555431 2233346789999999 66665544
Q ss_pred CChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 004862 518 RMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEA 597 (726)
Q Consensus 518 ~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~ 597 (726)
.++. .-.++... +.. -...+++++..+|...
T Consensus 245 d~e~-----r~aiL~kk-------------------------a~~-~~~~i~~ev~~~la~~------------------ 275 (408)
T COG0593 245 DDET-----RLAILRKK-------------------------AED-RGIEIPDEVLEFLAKR------------------ 275 (408)
T ss_pred CHHH-----HHHHHHHH-------------------------HHh-cCCCCCHHHHHHHHHH------------------
Confidence 3222 22222221 111 2336899999998875
Q ss_pred CCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhh
Q 004862 598 APIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVS 641 (726)
Q Consensus 598 ~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 641 (726)
+.-++|+|+..+...-+.|....+ .+|.+-+.++++-+...
T Consensus 276 --~~~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 276 --LDRNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred --hhccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 456889999999888888877766 78999998888766543
No 209
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.38 E-value=4.7e-06 Score=84.45 Aligned_cols=186 Identities=19% Similarity=0.305 Sum_probs=99.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEe--CCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT--SGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP 445 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~--~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~ 445 (726)
..-.+.||+|||||...+.+++.+.+.+++ +....+...+. .+-.|. ...|.-+|+|||++++.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~------------ril~G~--~~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLS------------RILKGL--AQSGAWLCFDEFNRLSE 98 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHH------------HHHHHH--HHHT-EEEEETCCCSSH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHH------------HHHHHH--hhcCchhhhhhhhhhhH
Confidence 456789999999999999999999998775 22111111100 001111 12355789999999998
Q ss_pred HHHHHH-------HHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 446 EDRVAI-------HEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 446 ~~~~~L-------~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
+....+ ..++..+.-.+.-.|....++..+.+..|+||.+. ....+|+.|..-|--+..+. |
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~---------gr~~LP~nLk~lFRpvam~~--P 167 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYA---------GRSELPENLKALFRPVAMMV--P 167 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CC---------CC--S-HHHCTTEEEEE--S---
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccC---------CcccCCHhHHHHhheeEEeC--C
Confidence 876554 44554444445556778888889999999998532 23348888777775443222 1
Q ss_pred Chhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 004862 519 MYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEA 597 (726)
Q Consensus 519 ~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~ 597 (726)
| ..|++-.+-..- . .-.....+.+...|...+..-.+ .
T Consensus 168 ----D~~~I~ei~L~s~G-----------F-------------------~~a~~La~kl~~l~~l~~~~lS~-------q 206 (231)
T PF12774_consen 168 ----DLSLIAEILLLSQG-----------F-------------------KDAKSLAKKLVSLFQLCKEQLSK-------Q 206 (231)
T ss_dssp -----HHHHHHHHHHCCC-----------T-------------------SSHHHHHHHHHHHHHHHHHCS-S-------S
T ss_pred ----CHHHHHHHHHHHcC-----------c-------------------hhHHHHHHHHHHHHHHHHHhhcc-------C
Confidence 2 223333222110 0 11233444555555544433221 2
Q ss_pred CCccCChhHHHHHHHHHHHHHh
Q 004862 598 APIPITVRQLEAIVRLSEALAK 619 (726)
Q Consensus 598 ~~~~~t~R~L~~lirla~a~A~ 619 (726)
..+....|.+.++++.|-.+-|
T Consensus 207 ~hydfgLRalk~vl~~a~~~kr 228 (231)
T PF12774_consen 207 DHYDFGLRALKSVLRMAGSLKR 228 (231)
T ss_dssp TT---SHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHhc
Confidence 3566789999999998876543
No 210
>PHA01747 putative ATP-dependent protease
Probab=98.36 E-value=8.3e-06 Score=85.38 Aligned_cols=167 Identities=14% Similarity=0.137 Sum_probs=101.7
Q ss_pred HHHHHHhhcCCccCch-hHHH--HHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCC
Q 004862 325 YKTVCSKIAPSIFGHD-DVKK--AVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKG 401 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~-~~k~--aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~ 401 (726)
.+.|+.|+--+--++. ..|. .+|.-|+-=+. .+.+ ..+.|++=.||.|||||++.+-+...+|..+ +|..
T Consensus 150 iDlLlrSiGyeP~~~~~r~k~~~l~L~RLiPlVE--~~~~---~~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~ 222 (425)
T PHA01747 150 YDDLLAAFGYDTDKMIRNDAVNRLTLPRLLPLFT--SPVS---KRPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEP 222 (425)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhhhhee--ccCC---CCCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCC
Confidence 7888888754444432 2232 44443432221 0111 1458999999999999999999988888876 4444
Q ss_pred CCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCC----HHHHHHHHHHHhcceEeeeccce--EE--EeeC
Q 004862 402 SSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR----PEDRVAIHEAMEQQTISIAKAGI--TT--VLNS 473 (726)
Q Consensus 402 ~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~----~~~~~~L~~~me~~~i~i~~~g~--~~--~l~~ 473 (726)
.+.+-|.... .++ ..|.+.+.| ++++||+..+. .+....|...||+|.++ +++. .. +..+
T Consensus 223 ~TvA~LFyN~----~t~----~~GLVg~~D--~VaFDEVa~i~f~~~kdiv~IMKdYMesG~Fs--RG~~~~ss~~sI~a 290 (425)
T PHA01747 223 PTYANLVYDA----KTN----ALGLVFLSN--GLIFDEIQTWKDSNMRAINSTLSTGMENCVWT--RGAGTESDAATIVR 290 (425)
T ss_pred CchHHheEec----CCC----ceeEEeecc--EEEEEccccccCCCHHHHHHHHHHHhhcceee--cCCCCcccchhhcc
Confidence 4544443322 122 245544444 78999999975 34567888889999965 4433 22 5677
Q ss_pred ceEEEEecCCC---CCcCCCcc---c-hhhhcc---CchhhhcccCe
Q 004862 474 RTSVLAAANPP---SGRYDDLK---S-AQDNID---LQTTILSRFDL 510 (726)
Q Consensus 474 ~~~iiaa~Np~---~g~~~~~~---~-~~~~~~---l~~~Ll~RFdl 510 (726)
.++++-+.|+. .+.|.... . +.+-.- +.+|||+||.+
T Consensus 291 ~asiVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIhi 337 (425)
T PHA01747 291 CIPIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIAI 337 (425)
T ss_pred ceeEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhhh
Confidence 89999998874 22332211 1 111111 26799999983
No 211
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.33 E-value=1.1e-05 Score=90.06 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=66.3
Q ss_pred cCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC-CCCcCCCccchhhhccCch
Q 004862 424 GGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP-PSGRYDDLKSAQDNIDLQT 502 (726)
Q Consensus 424 ~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np-~~g~~~~~~~~~~~~~l~~ 502 (726)
.|+|..|++|++=+=|+-+.+.+....|+.+.+++.+. ..+....++.+-.|||.||- .+..| .+..-.+
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~--~~~~~~~i~~D~vIiaHsNE~E~~~F-------~~nk~nE 318 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYN--GTEGIGAIPFDGIILAHSNESEWQTF-------RNNKNNE 318 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCccc--CCCCcceeccceeEEecCCHHHHHHH-------hcCccch
Confidence 47788899887777799999999999999999999864 22333456888999999995 22222 2333567
Q ss_pred hhhcccCeeeEeccCCChhhhHHHHHHHHH
Q 004862 503 TILSRFDLIFIVKDIRMYNQDKLIASHIIK 532 (726)
Q Consensus 503 ~Ll~RFdli~~l~d~~~~~~d~~i~~~il~ 532 (726)
+|++|.-+ +.+|-.-.-.....|.+.++.
T Consensus 319 A~~DRi~~-V~VPY~lr~~eE~kIYeKll~ 347 (644)
T PRK15455 319 AFLDRIYI-VKVPYCLRVSEEIKIYEKLLR 347 (644)
T ss_pred hhhceEEE-EeCCccCChhHHHHHHHHHhc
Confidence 89999844 333332222223455555543
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.30 E-value=1e-06 Score=81.27 Aligned_cols=130 Identities=17% Similarity=0.171 Sum_probs=66.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc---EE-eCCCCCCcccccc----eeeecC-CCchhhhccCceeecC---CCeE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA---VY-TSGKGSSAAGLTA----SVIRDG-SSREFYLEGGAMVLAD---GGVV 435 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~---~~-~~g~~~~~~gl~~----~~~~~~-~~~~~~~~~G~l~la~---~gvl 435 (726)
.+++|+||||||||++++.++..+... +. ............. ...... ...........+..+. ..++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 689999999999999999999887764 22 2221111000000 000000 0000001111222222 3899
Q ss_pred EecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEe
Q 004862 436 CIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIV 514 (726)
Q Consensus 436 ~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l 514 (726)
+|||++.+.......+...... ..............+|+++|+ .....+..+..|++..+.+
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND------------EKDLGPALLRRRFDRRIVL 144 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCC------------CccCchhhhhhccceEEEe
Confidence 9999999988776554432110 000000112345789999994 1112344555577766554
No 213
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=6.3e-06 Score=84.35 Aligned_cols=148 Identities=20% Similarity=0.296 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCC--cccccceeeecCCC
Q 004862 340 DDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSS--AAGLTASVIRDGSS 417 (726)
Q Consensus 340 ~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~--~~gl~~~~~~~~~~ 417 (726)
+.++-|....+++.-.- +..-+.-+--+||.||||||||+|.+++++.+. +.+.++..- ...+++... -
T Consensus 153 ~ll~Ya~s~l~fsek~v---ntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLS--IR~~~~y~~~~liEinshsL----F 223 (423)
T KOG0744|consen 153 RLLSYAASALLFSEKKV---NTNLITWNRLILLHGPPGTGKTSLCKALAQKLS--IRTNDRYYKGQLIEINSHSL----F 223 (423)
T ss_pred HHHHHHHHHHHHHhcCC---CCceeeeeeEEEEeCCCCCChhHHHHHHHHhhe--eeecCccccceEEEEehhHH----H
Confidence 33455555555554111 111233334699999999999999999988663 222222111 111111111 1
Q ss_pred chhhhccCcee----------ecCCC---eEEecccCcCCHHH---------------HHHHHHHHhcceEeeeccceEE
Q 004862 418 REFYLEGGAMV----------LADGG---VVCIDEFDKMRPED---------------RVAIHEAMEQQTISIAKAGITT 469 (726)
Q Consensus 418 ~~~~~~~G~l~----------la~~g---vl~iDEi~~~~~~~---------------~~~L~~~me~~~i~i~~~g~~~ 469 (726)
..|.-+.|.++ ..+.| .++|||++.+.... -++|+.-|++=
T Consensus 224 SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl----------- 292 (423)
T KOG0744|consen 224 SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL----------- 292 (423)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-----------
Confidence 23444455442 12233 46789998764321 23444444421
Q ss_pred EeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCCh
Q 004862 470 VLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMY 520 (726)
Q Consensus 470 ~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~ 520 (726)
.-..++.++||+|-. ..+..++.+|-|+.+.+-++..+
T Consensus 293 K~~~NvliL~TSNl~-------------~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 293 KRYPNVLILATSNLT-------------DSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred ccCCCEEEEeccchH-------------HHHHHHhhhHhhheeecCCccHH
Confidence 113478999999942 22678999999999999877743
No 214
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.3e-05 Score=86.32 Aligned_cols=119 Identities=26% Similarity=0.382 Sum_probs=69.6
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCC--CCCcccccceeeecCCCchhhhccCceeecCCCeEEecccC
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGK--GSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFD 441 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~--~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~ 441 (726)
+-...+|++||||||||++++++++...-.++. +|. .+...|-+.+..|. .| .-+...+-..++||||++
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~----~f---~~a~k~~~psii~IdEld 288 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRK----AF---AEALKFQVPSIIFIDELD 288 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHH----HH---HHHhccCCCeeEeHHhHh
Confidence 334679999999999999999999887643332 111 11111111111110 00 011112226799999999
Q ss_pred cCCH--------H--HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc-ccCe
Q 004862 442 KMRP--------E--DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS-RFDL 510 (726)
Q Consensus 442 ~~~~--------~--~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~-RFdl 510 (726)
.+.+ + .-..|+.+|+.-. -...+.||||+|.+.+ +.+++.+ |||-
T Consensus 289 ~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~s-------------ld~alRRgRfd~ 344 (693)
T KOG0730|consen 289 ALCPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPDS-------------LDPALRRGRFDR 344 (693)
T ss_pred hhCCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCccc-------------cChhhhcCCCcc
Confidence 9976 2 2356677776321 1235779999996532 6677765 9994
Q ss_pred eeEe
Q 004862 511 IFIV 514 (726)
Q Consensus 511 i~~l 514 (726)
-+.+
T Consensus 345 ev~I 348 (693)
T KOG0730|consen 345 EVEI 348 (693)
T ss_pred eeee
Confidence 4333
No 215
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.19 E-value=1.4e-05 Score=78.93 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=41.9
Q ss_pred cCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC
Q 004862 430 ADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD 509 (726)
Q Consensus 430 a~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd 509 (726)
+...+++|||++.|+++.++.|+..||+. +..+.+|.++|.+ ..+.+++.+|+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~-------------~~l~~~i~sr~~ 148 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSP-------------EKLLPTIRSRCQ 148 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECCh-------------HhChHHHHhhcE
Confidence 44569999999999999999999999863 2234555555521 237788999985
Q ss_pred eeeEec
Q 004862 510 LIFIVK 515 (726)
Q Consensus 510 li~~l~ 515 (726)
++.+.
T Consensus 149 -~~~~~ 153 (188)
T TIGR00678 149 -VLPFP 153 (188)
T ss_pred -EeeCC
Confidence 44443
No 216
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=2.7e-05 Score=84.56 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=38.9
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhC
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.+|+||+.+++.+.-++..| |-.+-+||.||+|+||+++|.++++.+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999888877 222349999999999999999887654
No 217
>PRK06526 transposase; Provisional
Probab=98.16 E-value=5.4e-07 Score=92.86 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=74.2
Q ss_pred HHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhh
Q 004862 342 VKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFY 421 (726)
Q Consensus 342 ~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~ 421 (726)
+.+..+..|..+ .+++...|++|+||||||||+||.+++..+...-+.. ...+...+..........+..
T Consensus 81 ~~~~~~~~l~~~--------~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v-~f~t~~~l~~~l~~~~~~~~~- 150 (254)
T PRK06526 81 LKRDTIAHLGTL--------DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRV-LFATAAQWVARLAAAHHAGRL- 150 (254)
T ss_pred cchHHHHHHhcC--------chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCch-hhhhHHHHHHHHHHHHhcCcH-
Confidence 445555555544 3445557999999999999999999866543211100 000111111000000000000
Q ss_pred hccCceeecCCCeEEecccCcCC--HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhcc
Q 004862 422 LEGGAMVLADGGVVCIDEFDKMR--PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNID 499 (726)
Q Consensus 422 ~~~G~l~la~~gvl~iDEi~~~~--~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~ 499 (726)
......+..-.+++|||++..+ +..+..|+++++... . +.++|.|+|-+.+.|... .....
T Consensus 151 -~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~------------~-~~s~IitSn~~~~~w~~~---~~d~~ 213 (254)
T PRK06526 151 -QAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRY------------E-RASLIVTSNKPFGRWGEV---FGDDV 213 (254)
T ss_pred -HHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHH------------h-cCCEEEEcCCCHHHHHHH---cCChH
Confidence 0000012344699999999875 556678889887542 0 125788999766655421 11222
Q ss_pred Cchhhhccc
Q 004862 500 LQTTILSRF 508 (726)
Q Consensus 500 l~~~Ll~RF 508 (726)
+..+++||.
T Consensus 214 ~a~ai~dRl 222 (254)
T PRK06526 214 VAAAMIDRL 222 (254)
T ss_pred HHHHHHHHH
Confidence 445666775
No 218
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.7e-06 Score=86.54 Aligned_cols=101 Identities=24% Similarity=0.274 Sum_probs=58.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeC--C-CCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC-
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS--G-KGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM- 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~--g-~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~- 443 (726)
.-+||+||||||||.+++++++...-.+... + -.+-..|-.+-.+|+. |.+.. .-...++|+||||..
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRem----f~yA~----~~~pciifmdeiDAig 238 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDM----FRYAR----EVIPCIIFMDEIDAIG 238 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHH----HHHHh----hhCceEEeehhhhhhc
Confidence 4599999999999999999998876543321 0 0001112222222211 11100 001268999999874
Q ss_pred ----------CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCC
Q 004862 444 ----------RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPP 484 (726)
Q Consensus 444 ----------~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~ 484 (726)
+...|..|.+.+.+-. ......++.+|.|+|.+
T Consensus 239 GRr~se~Ts~dreiqrTLMeLlnqmd--------gfd~l~rVk~ImatNrp 281 (388)
T KOG0651|consen 239 GRRFSEGTSSDREIQRTLMELLNQMD--------GFDTLHRVKTIMATNRP 281 (388)
T ss_pred cEEeccccchhHHHHHHHHHHHHhhc--------cchhcccccEEEecCCc
Confidence 3345666666665311 11234578999999964
No 219
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.11 E-value=4.9e-05 Score=76.37 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=85.8
Q ss_pred ccCchhHHHHHH---HHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 336 IFGHDDVKKAVS---CLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 336 I~G~~~~k~ail---l~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
++|.+.-|+.++ .+.+.| ....|+||+|+.|||||++++++....... ||-.--+
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G-----------~pannvLL~G~rGtGKSSlVkall~~y~~~-----------GLRlIev 86 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQG-----------LPANNVLLWGARGTGKSSLVKALLNEYADQ-----------GLRLIEV 86 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcC-----------CCCcceEEecCCCCCHHHHHHHHHHHHhhc-----------CceEEEE
Confidence 567777777664 333444 223799999999999999999987654221 1110000
Q ss_pred ecCCCchhhhccCce----eecCCCeEEecccCcCCHH-HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCC--
Q 004862 413 RDGSSREFYLEGGAM----VLADGGVVCIDEFDKMRPE-DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPS-- 485 (726)
Q Consensus 413 ~~~~~~~~~~~~G~l----~la~~gvl~iDEi~~~~~~-~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~-- 485 (726)
.. .....-+..+ .....-|+|+|++.-=..+ .-..|..+|| |. ....|.++.|.||+|..+
T Consensus 87 ~k---~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~Le-Gg--------le~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 87 SK---EDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLE-GG--------LEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred CH---HHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhc-Cc--------cccCCCcEEEEEecchhhcc
Confidence 00 0000000000 0123458999996532222 2355666665 22 234588999999999722
Q ss_pred -CcCCCccc-------hhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHH
Q 004862 486 -GRYDDLKS-------AQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHII 531 (726)
Q Consensus 486 -g~~~~~~~-------~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il 531 (726)
..|.+... ..+...=.-+|-+||.|.+.+.++.- +.=..|.++.+
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q-~~YL~IV~~~~ 207 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQ-EEYLAIVRHYA 207 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCH-HHHHHHHHHHH
Confidence 12222211 11111111367899999998876552 22234444444
No 220
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.7e-06 Score=83.92 Aligned_cols=133 Identities=23% Similarity=0.301 Sum_probs=71.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccccee-eec-CCCchhhhccCceee---cCCCeEEecccCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASV-IRD-GSSREFYLEGGAMVL---ADGGVVCIDEFDK 442 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~-~~~-~~~~~~~~~~G~l~l---a~~gvl~iDEi~~ 442 (726)
-.|+|+|+||||||.||+++++.....+. -..++- +.. -..|.... ...+.. ....|+||||||.
T Consensus 220 KGVIlyG~PGTGKTLLAKAVANqTSATFl---------RvvGseLiQkylGdGpklv-RqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 220 KGVILYGEPGTGKTLLAKAVANQTSATFL---------RVVGSELIQKYLGDGPKLV-RELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred CeeEEeCCCCCchhHHHHHHhcccchhhh---------hhhhHHHHHHHhccchHHH-HHHHHHHHhcCCceEEeehhhh
Confidence 35999999999999999999875432221 111110 000 00010000 000111 1246999999998
Q ss_pred CC-----------HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccC
Q 004862 443 MR-----------PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFD 509 (726)
Q Consensus 443 ~~-----------~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFd 509 (726)
+. .+.|..+++.+.|-- |- .-..++.||.|||... .+.|+|++ |.|
T Consensus 290 iGtKRyds~SggerEiQrtmLELLNQld------GF--dsrgDvKvimATnrie-------------~LDPaLiRPGrID 348 (440)
T KOG0726|consen 290 IGTKRYDSNSGGEREIQRTMLELLNQLD------GF--DSRGDVKVIMATNRIE-------------TLDPALIRPGRID 348 (440)
T ss_pred hccccccCCCccHHHHHHHHHHHHHhcc------Cc--cccCCeEEEEeccccc-------------ccCHhhcCCCccc
Confidence 74 346778888886521 11 1134688999999632 25566543 566
Q ss_pred eeeEeccCCChhhhHHHHHHHHHHhhh
Q 004862 510 LIFIVKDIRMYNQDKLIASHIIKIHAS 536 (726)
Q Consensus 510 li~~l~d~~~~~~d~~i~~~il~~~~~ 536 (726)
--+.++ .| |..-.++|+.+|..
T Consensus 349 rKIef~-~p----De~TkkkIf~IHTs 370 (440)
T KOG0726|consen 349 RKIEFP-LP----DEKTKKKIFQIHTS 370 (440)
T ss_pred cccccC-CC----chhhhceeEEEeec
Confidence 333322 22 33345556666543
No 221
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.0001 Score=78.48 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=40.4
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhC
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
+.+|+||+.+++.+.-++-.| |-.+..||+||+|+||+.+|.++++.+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999888776 333789999999999999999886654
No 222
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=5.3e-06 Score=89.13 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=68.1
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCH----
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP---- 445 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~---- 445 (726)
-||+||||||||++..|+|+.+.-++|. |.-+.+.+. .+ +..-.+...+..|++|.+||..-.
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIyd---------LeLt~v~~n--~d--Lr~LL~~t~~kSIivIEDIDcs~~l~~~ 304 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYD---------LELTEVKLD--SD--LRHLLLATPNKSILLIEDIDCSFDLRER 304 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEE---------eeeccccCc--HH--HHHHHHhCCCCcEEEEeecccccccccc
Confidence 7999999999999999999999988883 222222221 11 222222345677999999987511
Q ss_pred --------------HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccC
Q 004862 446 --------------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFD 509 (726)
Q Consensus 446 --------------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFd 509 (726)
-....|+.+++ |.++ .--..-.||.|||-+ -.|.|||++ |.|
T Consensus 305 ~~~~~~~~~~~~~~VTlSGLLNfiD-GlwS--------scg~ERIivFTTNh~-------------EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 305 RKKKKENFEGDLSRVTLSGLLNFLD-GLWS--------SCGDERIIVFTTNHK-------------EKLDPALLRPGRMD 362 (457)
T ss_pred cccccccccCCcceeehHHhhhhhc-cccc--------cCCCceEEEEecCCh-------------hhcCHhhcCCCcce
Confidence 01122333332 2111 110122477788843 238999999 999
Q ss_pred eeeEec
Q 004862 510 LIFIVK 515 (726)
Q Consensus 510 li~~l~ 515 (726)
+.+.+.
T Consensus 363 mhI~mg 368 (457)
T KOG0743|consen 363 MHIYMG 368 (457)
T ss_pred eEEEcC
Confidence 999774
No 223
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00015 Score=84.26 Aligned_cols=207 Identities=15% Similarity=0.171 Sum_probs=112.0
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC-CCCCCc-----c
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS-GKGSSA-----A 405 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~-g~~~~~-----~ 405 (726)
+.| +.|.+....-++--|...+ .-|-+|+|+||+|||.++..+|.....+-.-. -.+... .
T Consensus 169 lDP-vIGRd~EI~r~iqIL~RR~------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 169 LDP-VIGRDEEIRRTIQILSRRT------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred CCC-CcChHHHHHHHHHHHhccC------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence 444 4465554444444444332 24678999999999999998876543321100 000000 0
Q ss_pred cccceeeecCCCchhhhccC----ceeecCCCeEEecccCcCC---------HHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 406 GLTASVIRDGSSREFYLEGG----AMVLADGGVVCIDEFDKMR---------PEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 406 gl~~~~~~~~~~~~~~~~~G----~l~la~~gvl~iDEi~~~~---------~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
.+.++.. ..|+|.-.-. .+..+.+-|+|||||+.+- -+.-+.|..++..|+
T Consensus 236 ~LvAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe------------- 299 (786)
T COG0542 236 SLVAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE------------- 299 (786)
T ss_pred HHhcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-------------
Confidence 1111111 1244421110 1123446699999998751 223455666665555
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
.++|+||.- +.+ ...+.=.++|-+||.-++ .+.|+.+.-..|-+-+...+...+. ..++.+.
T Consensus 300 --L~~IGATT~-----~EY---Rk~iEKD~AL~RRFQ~V~--V~EPs~e~ti~ILrGlk~~yE~hH~------V~i~D~A 361 (786)
T COG0542 300 --LRCIGATTL-----DEY---RKYIEKDAALERRFQKVL--VDEPSVEDTIAILRGLKERYEAHHG------VRITDEA 361 (786)
T ss_pred --eEEEEeccH-----HHH---HHHhhhchHHHhcCceee--CCCCCHHHHHHHHHHHHHHHHHccC------ceecHHH
Confidence 467888863 111 122345689999999877 4555555444444444444333322 3466666
Q ss_pred HHHHHHHhHccCC-CCCCHHHHHHHHHHHHHHHH
Q 004862 553 LKRYIQYCRLECH-PRLSESASAKLRDQYVQIRK 585 (726)
Q Consensus 553 L~~yi~~a~~~~~-p~ls~ea~~~l~~~y~~~R~ 585 (726)
|..-...+.+++. ..|++.|.+.|-..-..+|.
T Consensus 362 l~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 362 LVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence 6666666555544 35788888888777665554
No 224
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=98.04 E-value=0.00062 Score=71.88 Aligned_cols=323 Identities=15% Similarity=0.157 Sum_probs=188.4
Q ss_pred EEEecCccccccCCcEEEEEEEEEeeeCCCCCCCCCcceeEeeeEEEEEeeeeeccccccCCCCCCHHHHHHHHHHhcCc
Q 004862 243 LSVDRHLVQTIVPGTRLTIMGIYSIFQSANSPASHKGAVAVRQPYIRVVGLEETNEASSRGAAAFTQEEIEKFKKFASQP 322 (726)
Q Consensus 243 v~l~~dLv~~~~pGd~V~V~GIl~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (726)
|-++++.=-+++..|.|.+.||+.+.+.-. ...+.......-..+.+++.. ...+ .+.++-+. ++++
T Consensus 203 VKvYe~~et~~qvnd~vdf~Gilsvdp~la---~ld~ld~~~~ae~qa~hvq~l----qh~n-Pllp~ilr--~el~--- 269 (543)
T KOG2545|consen 203 VKVYEGMETKVQVNDAVDFIGILSVDPELA---SLDGLDCLHMAEFQAYHVQAL----QHPN-PLLPEILR--KELR--- 269 (543)
T ss_pred EEEecCcccceehhhhhhhheeeecChhhh---cCCCcccccHHHHHHHHHhcc----CCCC-ccchHHHH--HHhh---
Confidence 667777766699999999999998654320 000000000000111111111 0111 12222221 1221
Q ss_pred chHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCc--hhHHHHHHHHHHhCCCcEEeCCC
Q 004862 323 DAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPS--TAKSQFLKFVEKTAPIAVYTSGK 400 (726)
Q Consensus 323 ~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pG--tGKt~la~~i~~~~~~~~~~~g~ 400 (726)
..|...+---..|...+-+-+++.|.+.+-.. .+|. .-|...+=|++=|- +--|+|-+.+..+.|.+++...+
T Consensus 270 ---~~Llkylt~~Lg~d~iAAeyLllhLlStV~~R-~d~l-~iGkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~pmt 344 (543)
T KOG2545|consen 270 ---PKLLKYLTKVLGNDNIAAEYLLLHLLSTVYHR-TDGL-VIGKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQPMT 344 (543)
T ss_pred ---HHHHHHHHHhhcCchHHHHHHHHHHHHHhhcc-ccce-EeeeeEEeecCCCchhHHHHHHHHHHHHhchhhheeeee
Confidence 22333333333445556778888888765321 1121 11234455555443 35577888888889988764221
Q ss_pred CCCccccc-ceeeecCCCchhhhccCceeecCCCeEEecccCcC-------CHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 401 GSSAAGLT-ASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM-------RPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 401 ~~~~~gl~-~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~-------~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
...++ ++.......+...+.+|.+-+|+|-.++|||=..- .-..-..|-..+++|.+...-.-.....+
T Consensus 345 ---ie~lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~ 421 (543)
T KOG2545|consen 345 ---IEELNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVH 421 (543)
T ss_pred ---HHhhcccCccccccccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEec
Confidence 11222 22222222233346789999999999999994332 22234678888999998876665667788
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
++++|+..+- |+ .-+|. |+.+.+.+..-+. + ....+-+...
T Consensus 422 ~nv~vlIlSe---Gr----------silPA------Dl~i~lqp~~v~~------------l--------e~~tps~l~q 462 (543)
T KOG2545|consen 422 SNVRVLILSE---GR----------SILPA------DLGIRLQPDSVDT------------L--------EFPTPSDLLQ 462 (543)
T ss_pred cCceEEEeeC---Cc----------ccCcc------cccccCCCCCCCc------------c--------ccCChhHHHH
Confidence 9999988875 22 11332 4444333221000 0 0001122344
Q ss_pred HHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 004862 553 LKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN 632 (726)
Q Consensus 553 L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~ 632 (726)
.+.|+..+|. ..-.+++|..+++.+-|+.+|+..+. .+...|-.++-.|+.+++-.++.+++.+|-.
T Consensus 463 ~rcyltt~r~-l~~nIsee~t~~iq~dfV~mRq~n~~------------snaddLs~lLv~sRlls~S~G~ttlsre~wq 529 (543)
T KOG2545|consen 463 FRCYLTTMRN-LRANISEEMTDYIQSDFVSMRQYNKE------------SNADDLSLLLVCSRLLSKSFGRTTLSREDWQ 529 (543)
T ss_pred HHHHHHHHHh-hccCccHHHHHHHHHHHHHHHhhCcc------------cchhHHHHHHHHHHHHHHhhccchhhHHHHH
Confidence 6677777775 55679999999999999999987543 4577899999999999999999999999999
Q ss_pred HHHHHH
Q 004862 633 EAVRLF 638 (726)
Q Consensus 633 ~ai~l~ 638 (726)
.|.++-
T Consensus 530 ~a~ele 535 (543)
T KOG2545|consen 530 AARELE 535 (543)
T ss_pred HHHHHH
Confidence 888764
No 225
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00014 Score=77.90 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=84.6
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccc------
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAG------ 406 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~g------ 406 (726)
+.+|+||+.+++.+.-++..| +-.+-.||+||+|+||+++|+.+++.+--... .+.......
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~-~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQ-QREYVDIIEFKPINK 70 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCC-CCCCCCeEEeccccC
Confidence 346889999999998888766 22244589999999999999999875411000 000000000
Q ss_pred --ccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE-EEEecCC
Q 004862 407 --LTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS-VLAAANP 483 (726)
Q Consensus 407 --l~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~-iiaa~Np 483 (726)
+....+++- -++.. ... ..+..-|++||+.+.|+.+.+++|+..+|+- |..+. |+.|.||
T Consensus 71 ~~i~v~~ir~~--~~~~~-~~p-~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-------------p~~t~~il~~~~~ 133 (313)
T PRK05564 71 KSIGVDDIRNI--IEEVN-KKP-YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-------------PKGVFIILLCENL 133 (313)
T ss_pred CCCCHHHHHHH--HHHHh-cCc-ccCCceEEEEechhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCCh
Confidence 000000000 00000 011 2345569999999999999999999999851 22333 4444443
Q ss_pred CCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 484 PSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 484 ~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
. .+.+++.||.. ++.+...+
T Consensus 134 ~--------------~ll~TI~SRc~-~~~~~~~~ 153 (313)
T PRK05564 134 E--------------QILDTIKSRCQ-IYKLNRLS 153 (313)
T ss_pred H--------------hCcHHHHhhce-eeeCCCcC
Confidence 1 47889999995 44444444
No 226
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=5e-06 Score=89.94 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.+||+||||||||.+||.|.+.+.
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLN 281 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLN 281 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhc
Confidence 489999999999999999977764
No 227
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.00 E-value=2.9e-05 Score=74.62 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=73.5
Q ss_pred CchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe---CCCCC--------Cccc
Q 004862 338 GHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT---SGKGS--------SAAG 406 (726)
Q Consensus 338 G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~---~g~~~--------~~~g 406 (726)
||+.+++.+.-++..+. -.+.+||+||+|+||+++|+++++..--.... ++.-. ...+
T Consensus 1 gq~~~~~~L~~~~~~~~-----------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcCC-----------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 78888888887776661 12448999999999999999887653211110 00000 0000
Q ss_pred ccceeeecCCCc--hhhh---c--cCce----eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 407 LTASVIRDGSSR--EFYL---E--GGAM----VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 407 l~~~~~~~~~~~--~~~~---~--~G~l----~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
+ -... +... .... . ...+ ..+..-|++|||+++|..+.+++|+..||+- |.++
T Consensus 70 ~--~~~~-~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~ 133 (162)
T PF13177_consen 70 F--IIIK-PDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENT 133 (162)
T ss_dssp E--EEEE-TTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTE
T ss_pred e--EEEe-cccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCE
Confidence 0 0000 0000 0000 0 0000 1123459999999999999999999999963 2345
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhcccC
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD 509 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd 509 (726)
.+|-+|+- ...+.+++.||.-
T Consensus 134 ~fiL~t~~-------------~~~il~TI~SRc~ 154 (162)
T PF13177_consen 134 YFILITNN-------------PSKILPTIRSRCQ 154 (162)
T ss_dssp EEEEEES--------------GGGS-HHHHTTSE
T ss_pred EEEEEECC-------------hHHChHHHHhhce
Confidence 55555542 2248899999984
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.00 E-value=1.6e-05 Score=85.31 Aligned_cols=141 Identities=22% Similarity=0.182 Sum_probs=83.8
Q ss_pred CccCchhHHHHHHHHHhCCCcccCCCCccccCcce-EEEECCCchhHHHHHHHHHHhCCCcEEe---------------C
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVN-VLLLGDPSTAKSQFLKFVEKTAPIAVYT---------------S 398 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~-vLL~G~pGtGKt~la~~i~~~~~~~~~~---------------~ 398 (726)
+++|++.+...++-+..... +. .| +||.||||+|||++|.++++.+.-.... .
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----------~~-~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----------RL-PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----------CC-CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 46677777666666665321 11 56 9999999999999999998765421110 0
Q ss_pred CCCCCcccccceeeecCC-Cch-hh--hccCcee--ecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEee
Q 004862 399 GKGSSAAGLTASVIRDGS-SRE-FY--LEGGAMV--LADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 399 g~~~~~~gl~~~~~~~~~-~~~-~~--~~~G~l~--la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
|.......++++..+... ..+ .. .+..... .+..-|++|||+|.|..+.+++|+..||.. +
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep-------------~ 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------------P 137 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------C
Confidence 011122223333222110 000 00 0000001 123459999999999999999999999864 3
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeee
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIF 512 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~ 512 (726)
.++.+|.+||.+ ..+.+++.||.-.+.
T Consensus 138 ~~~~~il~~n~~-------------~~il~tI~SRc~~i~ 164 (325)
T COG0470 138 KNTRFILITNDP-------------SKILPTIRSRCQRIR 164 (325)
T ss_pred CCeEEEEEcCCh-------------hhccchhhhcceeee
Confidence 467888888832 126668999985443
No 229
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.94 E-value=2.9e-05 Score=92.31 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=95.1
Q ss_pred CCeEEecccCcCC-------HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhh
Q 004862 432 GGVVCIDEFDKMR-------PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTI 504 (726)
Q Consensus 432 ~gvl~iDEi~~~~-------~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~L 504 (726)
.+|+|.|||+ || +++.-.|.+.||.|-++-+-+....++ .+.-+.+||||+ +...+..++..+
T Consensus 1564 ~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~--------td~gRv~~~eRf 1633 (3164)
T COG5245 1564 DLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPG--------TDEGRVKYYERF 1633 (3164)
T ss_pred heEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCC--------CCcccCccHHHH
Confidence 5799999998 54 455567788999877664433333333 467899999995 233445578888
Q ss_pred hcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHH
Q 004862 505 LSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIR 584 (726)
Q Consensus 505 l~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R 584 (726)
+.|--++| .+.|+-.....|.+.++... .+-.+..+ .++++.+..-..+|...|
T Consensus 1634 ~r~~v~vf--~~ype~~SL~~Iyea~l~~s------------~l~~~ef~------------~~se~~~~aSv~ly~~~k 1687 (3164)
T COG5245 1634 IRKPVFVF--CCYPELASLRNIYEAVLMGS------------YLCFDEFN------------RLSEETMSASVELYLSSK 1687 (3164)
T ss_pred hcCceEEE--ecCcchhhHHHHHHHHHHHH------------HHhhHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 87765555 34554444455555443321 11111111 367777788888999998
Q ss_pred HHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhh
Q 004862 585 KDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMK 621 (726)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~ 621 (726)
...+.. -...+..+||+|-+++|-....|...
T Consensus 1688 ~~~k~~-----lq~~y~y~pReLtR~lr~i~~yaeT~ 1719 (3164)
T COG5245 1688 DKTKFF-----LQMNYGYKPRELTRSLRAIFGYAETR 1719 (3164)
T ss_pred Hhhhhh-----cccccccChHHHHHHHHHHHhHHhcC
Confidence 877653 22357889999999999777766543
No 230
>PRK12377 putative replication protein; Provisional
Probab=97.92 E-value=2.2e-06 Score=87.72 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=65.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCce-eecCCCeEEecccCc--CC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAM-VLADGGVVCIDEFDK--MR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l-~la~~gvl~iDEi~~--~~ 444 (726)
.+++|+|+||||||+||.+++..+....+.. ...+...+...+...-..+.. ....+ .+..-.+|+|||++. .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v-~~i~~~~l~~~l~~~~~~~~~--~~~~l~~l~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSRLHESYDNGQS--GEKFLQELCKVDLLVLDEIGIQRET 178 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCe-EEEEHHHHHHHHHHHHhccch--HHHHHHHhcCCCEEEEcCCCCCCCC
Confidence 5899999999999999999987764321100 000111111100000000000 00001 134567999999954 56
Q ss_pred HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhccc
Q 004862 445 PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 445 ~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
+..++.|+++++.+. ....++|.|||-....|. ..+..+++||+
T Consensus 179 ~~~~~~l~~ii~~R~------------~~~~ptiitSNl~~~~l~--------~~~~~ri~dRl 222 (248)
T PRK12377 179 KNEQVVLNQIIDRRT------------ASMRSVGMLTNLNHEAMS--------TLLGERVMDRM 222 (248)
T ss_pred HHHHHHHHHHHHHHH------------hcCCCEEEEcCCCHHHHH--------HHhhHHHHHHH
Confidence 677889999998764 223567888995432221 12556677776
No 231
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.90 E-value=0.00045 Score=70.25 Aligned_cols=176 Identities=18% Similarity=0.243 Sum_probs=115.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.-.|+.|++|-=|+..=..+... .-+|.-+..+-. -.||+||||++.++-+.
T Consensus 253 ~lALFsGdTGEIr~EvRdqin~K--------------------------V~eWreEGKAei--vpGVLFIDEvHMLDIEc 304 (454)
T KOG2680|consen 253 FLALFSGDTGEIRSEVRDQINTK--------------------------VAEWREEGKAEI--VPGVLFIDEVHMLDIEC 304 (454)
T ss_pred eEEEEeCCcccccHHHHHHHHHH--------------------------HHHHHhcCCeee--ccceEEEeeehhhhhHH
Confidence 45788899987776654443211 124544433322 35899999999999999
Q ss_pred HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCC----CCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhh
Q 004862 448 RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPP----SGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQD 523 (726)
Q Consensus 448 ~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~----~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d 523 (726)
-..|.+++|+--- ..++.|||.- .|. ....-..+|-.||+|. |++...+...++
T Consensus 305 FsFlNrAlE~d~~--------------PiiimaTNrgit~iRGT-----n~~SphGiP~D~lDR~-lII~t~py~~~d-- 362 (454)
T KOG2680|consen 305 FSFLNRALENDMA--------------PIIIMATNRGITRIRGT-----NYRSPHGIPIDLLDRM-LIISTQPYTEED-- 362 (454)
T ss_pred HHHHHHHhhhccC--------------cEEEEEcCCceEEeecC-----CCCCCCCCcHHHhhhh-heeecccCcHHH--
Confidence 9999999996431 1345556641 111 1112244888999997 555444433222
Q ss_pred HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCC
Q 004862 524 KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPIT 603 (726)
Q Consensus 524 ~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t 603 (726)
.+.|+..++.. -...++++|.++|... ....+
T Consensus 363 ---~~~IL~iRc~E--------------------------Edv~m~~~A~d~Lt~i-------------------~~~ts 394 (454)
T KOG2680|consen 363 ---IKKILRIRCQE--------------------------EDVEMNPDALDLLTKI-------------------GEATS 394 (454)
T ss_pred ---HHHHHHhhhhh--------------------------hccccCHHHHHHHHHh-------------------hhhhh
Confidence 22333333221 1235889999999876 23367
Q ss_pred hhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhh
Q 004862 604 VRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVS 641 (726)
Q Consensus 604 ~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 641 (726)
.|-...||..|.-.|.-+-...|+.+|+..|.+||...
T Consensus 395 LRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 395 LRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDE 432 (454)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhh
Confidence 88888999888888887888899999999999998754
No 232
>PRK08181 transposase; Validated
Probab=97.90 E-value=2.6e-06 Score=88.31 Aligned_cols=118 Identities=18% Similarity=0.312 Sum_probs=65.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc----EEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA----VYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~----~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~ 443 (726)
-|++|+||||||||+|+.+++..+... .|. +...+..........+.. ..-.-.+..-.+++|||++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-----~~~~L~~~l~~a~~~~~~--~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-----RTTDLVQKLQVARRELQL--ESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-----eHHHHHHHHHHHHhCCcH--HHHHHHHhcCCEEEEeccccc
Confidence 689999999999999999997644321 121 111111110000000000 000001234469999999887
Q ss_pred CHH--HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhccc
Q 004862 444 RPE--DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 444 ~~~--~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
+.+ .+..|+++++... . +.++|.|+|-+.+.|.. ......+..+++||.
T Consensus 180 ~~~~~~~~~Lf~lin~R~------------~-~~s~IiTSN~~~~~w~~---~~~D~~~a~aildRL 230 (269)
T PRK08181 180 TKDQAETSVLFELISARY------------E-RRSILITANQPFGEWNR---VFPDPAMTLAAVDRL 230 (269)
T ss_pred cCCHHHHHHHHHHHHHHH------------h-CCCEEEEcCCCHHHHHH---hcCCccchhhHHHhh
Confidence 554 4568899988542 1 13588899976555542 112333556777776
No 233
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.88 E-value=0.0001 Score=75.80 Aligned_cols=113 Identities=23% Similarity=0.228 Sum_probs=69.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCC-----chhhhccC--ceee-cCCCeEEecc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSS-----REFYLEGG--AMVL-ADGGVVCIDE 439 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~-----~~~~~~~G--~l~l-a~~gvl~iDE 439 (726)
.|+|++||||||||....+++..+... .+..+-...++++.-++... ..|....+ .+.. +.-..+++||
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~---~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSP---HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCC---CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecc
Confidence 599999999999999998888766542 11111122344443332210 01111111 0111 1224789999
Q ss_pred cCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC
Q 004862 440 FDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD 509 (726)
Q Consensus 440 i~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd 509 (726)
.|.|..+.|++|.++.|+-+ +++++..-+|++. .+.+++.+||-
T Consensus 140 ADaMT~~AQnALRRviek~t-------------~n~rF~ii~n~~~-------------ki~pa~qsRct 183 (360)
T KOG0990|consen 140 ADAMTRDAQNALRRVIEKYT-------------ANTRFATISNPPQ-------------KIHPAQQSRCT 183 (360)
T ss_pred hhHhhHHHHHHHHHHHHHhc-------------cceEEEEeccChh-------------hcCchhhcccc
Confidence 99999999999998777533 4566666677642 26788889985
No 234
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=5.7e-05 Score=81.24 Aligned_cols=144 Identities=18% Similarity=0.202 Sum_probs=82.4
Q ss_pred CccC-chhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc----EEeCCCCC-------
Q 004862 335 SIFG-HDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA----VYTSGKGS------- 402 (726)
Q Consensus 335 ~I~G-~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~----~~~~g~~~------- 402 (726)
.|+| |+.+++.+.-++..| |-.+..||+||+|+||+++|+.+++..--. ...+|.-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~ 74 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS 74 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc
Confidence 4666 888888887777655 222345999999999999999987764211 00011000
Q ss_pred -CcccccceeeecCC--C-chhh-----hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 403 -SAAGLTASVIRDGS--S-REFY-----LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 403 -~~~gl~~~~~~~~~--~-~~~~-----~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
+-.++.. +..+.. + .+.. +.... ..++.-|++|||++.|+.+.+++|+..||+- |.
T Consensus 75 ~~hpD~~~-i~~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-------------p~ 139 (329)
T PRK08058 75 GNHPDVHL-VAPDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEEP-------------SG 139 (329)
T ss_pred CCCCCEEE-eccccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcCC-------------CC
Confidence 0000100 000000 0 0000 00001 2345569999999999999999999999962 23
Q ss_pred ceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 474 RTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 474 ~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
.+.+|.+|+.+ ..+.+++.||.-. +.+.++.
T Consensus 140 ~~~~Il~t~~~-------------~~ll~TIrSRc~~-i~~~~~~ 170 (329)
T PRK08058 140 GTTAILLTENK-------------HQILPTILSRCQV-VEFRPLP 170 (329)
T ss_pred CceEEEEeCCh-------------HhCcHHHHhhcee-eeCCCCC
Confidence 34444444411 1378899999853 3344444
No 235
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.81 E-value=1.1e-06 Score=85.61 Aligned_cols=119 Identities=16% Similarity=0.252 Sum_probs=55.0
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCc----EEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCc
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIA----VYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDK 442 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~----~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~ 442 (726)
..+++|+|+||||||+||.+++..+-.. .|+ +...|...+......+...-. .-.+.+-.+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-----~~~~L~~~l~~~~~~~~~~~~--~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-----TASDLLDELKQSRSDGSYEEL--LKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-----EHHHHHHHHHCCHCCTTHCHH--HHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-----ecCceeccccccccccchhhh--cCccccccEecccccce
Confidence 3789999999999999999997643221 111 111121111110001110000 00234557999999988
Q ss_pred CC--HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhccc
Q 004862 443 MR--PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 443 ~~--~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
.+ +...+.|+++++.+. . +-++|.|||.....|. ....+..+..++++|.
T Consensus 120 ~~~~~~~~~~l~~ii~~R~------------~-~~~tIiTSN~~~~~l~---~~~~d~~~a~aildRl 171 (178)
T PF01695_consen 120 EPLSEWEAELLFEIIDERY------------E-RKPTIITSNLSPSELE---EVLGDRALAEAILDRL 171 (178)
T ss_dssp S---HHHHHCTHHHHHHHH------------H-T-EEEEEESS-HHHHH---T---------------
T ss_pred eeecccccccchhhhhHhh------------c-ccCeEeeCCCchhhHh---hccccccccccccccc
Confidence 65 445677888887653 1 1256679996543332 1122334566777775
No 236
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.80 E-value=0.0013 Score=74.45 Aligned_cols=146 Identities=22% Similarity=0.171 Sum_probs=91.5
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCee
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLI 511 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli 511 (726)
.-|++|||+|.|-..-|..|+-+.+=-+ .-+++..|||-+|.. + +.+ -.|....-+|.++.
T Consensus 509 ~~VvLiDElD~Lvtr~QdVlYn~fdWpt----------~~~sKLvvi~IaNTm----d----lPE-r~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRSQDVLYNIFDWPT----------LKNSKLVVIAIANTM----D----LPE-RLLMNRVSSRLGLT 569 (767)
T ss_pred CEEEEeccHHHHhcccHHHHHHHhcCCc----------CCCCceEEEEecccc----c----CHH-HHhccchhhhccce
Confidence 3599999999998877887877765211 125678899999952 1 000 01222233455543
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
-... .+++...|+..|.-.-+-+ -.|..+|.++..+. +
T Consensus 570 Ri~F------------------------------~pYth~qLq~Ii~~RL~~~-~~f~~~aielvark-V---------- 607 (767)
T KOG1514|consen 570 RICF------------------------------QPYTHEQLQEIISARLKGL-DAFENKAIELVARK-V---------- 607 (767)
T ss_pred eeec------------------------------CCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHH-H----------
Confidence 3322 2344555555544322212 23566777776653 1
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCC-------CcccHHHHHHHHHHHhhhhhh
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLS-------HVATENEVNEAVRLFTVSTMD 644 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~-------~~V~~~Dv~~ai~l~~~s~~~ 644 (726)
....+.+|....+.+.|...|.-+.. ..|+..|+.+|+.-+..+...
T Consensus 608 ------AavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 608 ------AAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYI 661 (767)
T ss_pred ------HhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHH
Confidence 14568899999999999888876655 678999999999877665543
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=97.78 E-value=1.2e-05 Score=83.45 Aligned_cols=120 Identities=20% Similarity=0.314 Sum_probs=64.5
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCCC---cE-EeCCCCCCcccccceeeecCCCchh--hhccCceeecCCCeEEecc
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAPI---AV-YTSGKGSSAAGLTASVIRDGSSREF--YLEGGAMVLADGGVVCIDE 439 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~~---~~-~~~g~~~~~~gl~~~~~~~~~~~~~--~~~~G~l~la~~gvl~iDE 439 (726)
...+++|+||||||||+|+.+++..+.. .+ |.. ...+..........+.+ .+.. ......+++|||
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-----~~~l~~~l~~a~~~~~~~~~~~~---~~~~~dlLiiDd 172 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-----AADLLLQLSTAQRQGRYKTTLQR---GVMAPRLLIIDE 172 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-----HHHHHHHHHHHHHCCcHHHHHHH---HhcCCCEEEEcc
Confidence 3478999999999999999999655322 11 111 11111000000000000 0100 022346999999
Q ss_pred cCcCCH--HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhccc
Q 004862 440 FDKMRP--EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 440 i~~~~~--~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
++..+. .....|+++++... . +-++|.|+|.+.+.|...- .....+..+++||.
T Consensus 173 lg~~~~~~~~~~~lf~li~~r~----~---------~~s~iiTsn~~~~~w~~~~--~~d~~~~~ai~dRl 228 (259)
T PRK09183 173 IGYLPFSQEEANLFFQVIAKRY----E---------KGSMILTSNLPFGQWDQTF--AGDAALTSAMLDRL 228 (259)
T ss_pred cccCCCChHHHHHHHHHHHHHH----h---------cCcEEEecCCCHHHHHHHh--cCchhHHHHHHHHH
Confidence 998544 44557888887532 0 1247889997665554211 02223456677775
No 238
>PRK08116 hypothetical protein; Validated
Probab=97.78 E-value=1.1e-05 Score=84.13 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=56.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC----cEEeCCCCCCcccccceeeec-CCCchhhhccCce-eecCCCeEEeccc-
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI----AVYTSGKGSSAAGLTASVIRD-GSSREFYLEGGAM-VLADGGVVCIDEF- 440 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~----~~~~~g~~~~~~gl~~~~~~~-~~~~~~~~~~G~l-~la~~gvl~iDEi- 440 (726)
..++|+|+||||||+||.++++.+.. .+|.+ ...+...+... ...+... ....+ .+.+..+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----~~~ll~~i~~~~~~~~~~~-~~~~~~~l~~~dlLviDDlg 188 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----FPQLLNRIKSTYKSSGKED-ENEIIRSLVNADLLILDDLG 188 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----HHHHHHHHHHHHhcccccc-HHHHHHHhcCCCEEEEeccc
Confidence 56999999999999999999876422 12211 11111111000 0000000 00011 1345579999999
Q ss_pred -CcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC
Q 004862 441 -DKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP 483 (726)
Q Consensus 441 -~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np 483 (726)
+...+..+..|+++++.+. ....++|.|||-
T Consensus 189 ~e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~ 220 (268)
T PRK08116 189 AERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNL 220 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCC
Confidence 4567777888999988653 123458889984
No 239
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=97.72 E-value=0.00025 Score=61.40 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHhhhcccccc--cccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 004862 522 QDKLIASHIIKIHASADAVSA--DSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAP 599 (726)
Q Consensus 522 ~d~~i~~~il~~~~~~~~~~~--~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~ 599 (726)
....|++.|...+.....+.. ..+..++...|++|. .+++++...|...+. .
T Consensus 4 sS~~ir~rV~~Ar~~Q~~R~~~~~~Na~l~~~~l~~~~---------~l~~~~~~~l~~~~~-----------------~ 57 (96)
T PF13335_consen 4 SSAEIRERVEAARERQRERYGGIKCNAQLPGEELRKYC---------PLSSEAKKLLEQAAE-----------------K 57 (96)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCccccCCHHHHHhHc---------CCCHHHHHHHHHHHH-----------------H
Confidence 346677788777655544333 345678999999882 489999999998864 3
Q ss_pred ccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 600 IPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 600 ~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
..+|.|....++|+|.++|+|.+++.|+.+||.+|+.+
T Consensus 58 ~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 58 LNLSARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred cCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 56899999999999999999999999999999999863
No 240
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00047 Score=81.79 Aligned_cols=159 Identities=21% Similarity=0.237 Sum_probs=89.4
Q ss_pred cCCccCchh----HHHHHHHHHhCCCc-----ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCC
Q 004862 333 APSIFGHDD----VKKAVSCLLFGGSR-----KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSS 403 (726)
Q Consensus 333 ~p~I~G~~~----~k~aill~L~~~~~-----~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~ 403 (726)
+++|.|.+. +|.-+++-|.-+.. ..+++| ||+.||||||||.+|++++...++..-. . +
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrg--------vL~~GppGTGkTl~araLa~~~s~~~~k---i-s 331 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRG--------VLFHGPPGTGKTLMARALAAACSRGNRK---I-S 331 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcc--------eeecCCCCCchhHHHHhhhhhhcccccc---c-c
Confidence 566777654 45556655544321 223333 9999999999999999998877654210 0 0
Q ss_pred cccccceeeecC--CCchhhhccCc-----ee---ecCCCeEEecccCcCCHH-----------HHHHHHHHHhcceEee
Q 004862 404 AAGLTASVIRDG--SSREFYLEGGA-----MV---LADGGVVCIDEFDKMRPE-----------DRVAIHEAMEQQTISI 462 (726)
Q Consensus 404 ~~gl~~~~~~~~--~~~~~~~~~G~-----l~---la~~gvl~iDEi~~~~~~-----------~~~~L~~~me~~~i~i 462 (726)
+. .++. ..+.|..++.. +. .....|+|+||||-+.|- ....|+..|+. .
T Consensus 332 ff------mrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdG-l--- 401 (1080)
T KOG0732|consen 332 FF------MRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDG-L--- 401 (1080)
T ss_pred hh------hhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccC-C---
Confidence 00 0100 01223222110 01 122469999999966442 23445555542 1
Q ss_pred eccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhh--hcccCeeeEeccCCChhhhHHHHHHHHHHhhhcc
Q 004862 463 AKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTI--LSRFDLIFIVKDIRMYNQDKLIASHIIKIHASAD 538 (726)
Q Consensus 463 ~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~L--l~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~ 538 (726)
.-..++.||+|||.+. .+.++| --|||-.|.++-++ ..-+.+|+.+|...-
T Consensus 402 -------dsRgqVvvigATnRpd-------------a~dpaLRRPgrfdref~f~lp~-----~~ar~~Il~Ihtrkw 454 (1080)
T KOG0732|consen 402 -------DSRGQVVVIGATNRPD-------------AIDPALRRPGRFDREFYFPLPD-----VDARAKILDIHTRKW 454 (1080)
T ss_pred -------CCCCceEEEcccCCcc-------------ccchhhcCCcccceeEeeeCCc-----hHHHHHHHHHhccCC
Confidence 0123578999999642 145566 45799666654333 334778888886643
No 241
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.64 E-value=1.2e-05 Score=82.92 Aligned_cols=144 Identities=18% Similarity=0.177 Sum_probs=76.2
Q ss_pred ccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc---EEeCCCCCCcccccceee
Q 004862 336 IFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA---VYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 336 I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~---~~~~g~~~~~~gl~~~~~ 412 (726)
+-+...+.+..+..+.+.... +...-+++|+|+||||||+||-+++..+... +... +.+.+...+.
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~-------~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~----~~~el~~~Lk 149 (254)
T COG1484 81 FEFQPGIDKKALEDLASLVEF-------FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI----TAPDLLSKLK 149 (254)
T ss_pred ccCCcchhHHHHHHHHHHHHH-------hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE----EHHHHHHHHH
Confidence 445555555555555444211 1122689999999999999999997665421 1100 1111111100
Q ss_pred ecCCCchhhhccCcee-ecCCCeEEecccCcCCHH--HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCC
Q 004862 413 RDGSSREFYLEGGAMV-LADGGVVCIDEFDKMRPE--DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYD 489 (726)
Q Consensus 413 ~~~~~~~~~~~~G~l~-la~~gvl~iDEi~~~~~~--~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~ 489 (726)
..-..+. .+.-... +..--+|+|||+...+.. ..+.+++++.+..- .+.. +.++|-+.+.|+
T Consensus 150 ~~~~~~~--~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~------------~~~~-~~tsN~~~~~~~ 214 (254)
T COG1484 150 AAFDEGR--LEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYE------------SRSL-IITSNLSFGEWD 214 (254)
T ss_pred HHHhcCc--hHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHh------------hccc-eeecCCChHHHH
Confidence 0000000 0000011 445569999999996544 57788888776541 1223 889998776665
Q ss_pred CccchhhhccCchhhhccc
Q 004862 490 DLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 490 ~~~~~~~~~~l~~~Ll~RF 508 (726)
.... ......++++|.
T Consensus 215 ~~~~---~~~~~e~~~dRi 230 (254)
T COG1484 215 ELFG---DDALTEALLDRI 230 (254)
T ss_pred hhcc---CchhHHHHHHHH
Confidence 3211 111345666664
No 242
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.00069 Score=78.20 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=36.9
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
-.-++.||+...+.+.-++...... . ...--++|+||||+|||++++.+++.....
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~-~------~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLE-N------APKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccc-c------CCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 3345778887666665555443110 0 011248999999999999999998876643
No 243
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.60 E-value=7.7e-05 Score=66.31 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=56.2
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHH---
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPE--- 446 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~--- 446 (726)
|.|+|+||+|||++++.++..+........ .. ....+.+...-|. | .....++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~----~~---~vy~~~~~~~~w~---g---Y~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT----KD---SVYTRNPGDKFWD---G---YQGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC----CC---cEEeCCCccchhh---c---cCCCcEEEEeecCccccccch
Confidence 579999999999999997655443221000 00 0001111112221 1 123468999999998754
Q ss_pred -HHHHHHHHHhcceEeeeccceE---EEeeCceEEEEecC
Q 004862 447 -DRVAIHEAMEQQTISIAKAGIT---TVLNSRTSVLAAAN 482 (726)
Q Consensus 447 -~~~~L~~~me~~~i~i~~~g~~---~~l~~~~~iiaa~N 482 (726)
....|.+++....+....++.. ..+++ -.||+++|
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 5566778887766655444332 22222 35777777
No 244
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.59 E-value=0.0018 Score=67.28 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHhhcCCccCchhHHHHH--HHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 327 TVCSKIAPSIFGHDDVKKAV--SCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 327 ~l~~si~p~I~G~~~~k~ai--ll~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
.|.---.|-.+|+..+++++ +-.|+...++. .-.++||+|++|.|||++++...+.-|..
T Consensus 27 RI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~--------Rmp~lLivG~snnGKT~Ii~rF~~~hp~~ 88 (302)
T PF05621_consen 27 RIAYIRADRWIGYPRAKEALDRLEELLEYPKRH--------RMPNLLIVGDSNNGKTMIIERFRRLHPPQ 88 (302)
T ss_pred HHHHHhcCCeecCHHHHHHHHHHHHHHhCCccc--------CCCceEEecCCCCcHHHHHHHHHHHCCCC
Confidence 34444567788999988876 34445442211 11579999999999999999887766643
No 245
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.00025 Score=75.91 Aligned_cols=62 Identities=23% Similarity=0.219 Sum_probs=43.5
Q ss_pred cCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC
Q 004862 430 ADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD 509 (726)
Q Consensus 430 a~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd 509 (726)
+..-|++||++++|+.+..++|+..||+- |.++.+|-+|+.+ ..+.+++.||..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~-------------~~ll~TI~SRc~ 158 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQP-------------SRLLPTIKSRCQ 158 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECCh-------------hhCcHHHHhhce
Confidence 34459999999999999999999999962 2234444444421 127899999997
Q ss_pred eeeEeccCC
Q 004862 510 LIFIVKDIR 518 (726)
Q Consensus 510 li~~l~d~~ 518 (726)
. +.+.++.
T Consensus 159 ~-~~~~~~~ 166 (328)
T PRK05707 159 Q-QACPLPS 166 (328)
T ss_pred e-eeCCCcC
Confidence 6 3444444
No 246
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00052 Score=63.98 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=23.0
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.+.+.+.|+||+|||+++..++..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 478999999999999999999865543
No 247
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.50 E-value=3e-05 Score=82.82 Aligned_cols=96 Identities=15% Similarity=0.235 Sum_probs=55.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc----EEeCCCCCCcccccceeee---cCCCchhhhccCceeecCCCeEEeccc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA----VYTSGKGSSAAGLTASVIR---DGSSREFYLEGGAMVLADGGVVCIDEF 440 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~----~~~~g~~~~~~gl~~~~~~---~~~~~~~~~~~G~l~la~~gvl~iDEi 440 (726)
.+++|+|+||||||+|+.++++.+-.. .|. +...+...+.. +. .......-. .+.+-.+|+|||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~-----t~~~l~~~l~~~~~~~-~~~~~~~~~--~l~~~DLLIIDDl 255 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR-----TADELIEILREIRFNN-DKELEEVYD--LLINCDLLIIDDL 255 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE-----EHHHHHHHHHHHHhcc-chhHHHHHH--HhccCCEEEEecc
Confidence 579999999999999999998765321 221 11111111100 00 000000001 1233469999999
Q ss_pred CcC--CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC
Q 004862 441 DKM--RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP 483 (726)
Q Consensus 441 ~~~--~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np 483 (726)
+.. .+..++.|+++++... ..+-++|.|||-
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~------------~~~k~tIiTSNl 288 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRL------------LRQKKMIISTNL 288 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCC
Confidence 665 4566788888887653 112457888885
No 248
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.49 E-value=0.00019 Score=89.65 Aligned_cols=135 Identities=16% Similarity=0.269 Sum_probs=95.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCC--CCCcccccceeeecCCCchhhhccCceeec--CCCeEEecccCcC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGK--GSSAAGLTASVIRDGSSREFYLEGGAMVLA--DGGVVCIDEFDKM 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~--~~~~~gl~~~~~~~~~~~~~~~~~G~l~la--~~gvl~iDEi~~~ 443 (726)
.++||.||+|+|||.++..+++.....+..... ......+......+ .+|....+.|.++.| +|-.+++||++..
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~-~~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVAD-DNGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcC-CCCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 689999999999999999999988765442111 11111111111111 244445566777654 5778999999999
Q ss_pred CHHHHHHHHHHHhc-ceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCe
Q 004862 444 RPEDRVAIHEAMEQ-QTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 444 ~~~~~~~L~~~me~-~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
+.++.++|.+.+++ +++.+.........+.++.+.|+-||+.+ ..++..+..+|++||.-
T Consensus 520 ~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~-------y~grk~lsRa~~~rf~e 580 (1856)
T KOG1808|consen 520 PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGT-------YGGRKILSRALRNRFIE 580 (1856)
T ss_pred chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccc-------cchhhhhhhcccccchh
Confidence 99999999999998 88877766666666778999999998732 22445578899999973
No 249
>PRK06921 hypothetical protein; Provisional
Probab=97.47 E-value=4.8e-05 Score=79.12 Aligned_cols=95 Identities=16% Similarity=0.237 Sum_probs=53.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc-----EEeCCCCCCcccccceeeecCCCchhhhccCce-eecCCCeEEecccC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA-----VYTSGKGSSAAGLTASVIRDGSSREFYLEGGAM-VLADGGVVCIDEFD 441 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~-----~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l-~la~~gvl~iDEi~ 441 (726)
.+++|+|+||+|||+|+.++++.+... +|.+ ...+...+ .. .+......+ .+..-.+|+|||++
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-----~~~l~~~l-~~----~~~~~~~~~~~~~~~dlLiIDDl~ 187 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-----FVEGFGDL-KD----DFDLLEAKLNRMKKVEVLFIDDLF 187 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-----HHHHHHHH-HH----HHHHHHHHHHHhcCCCEEEEeccc
Confidence 579999999999999999998765432 1211 11111100 00 000000000 12345699999994
Q ss_pred c-------CCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCC
Q 004862 442 K-------MRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPP 484 (726)
Q Consensus 442 ~-------~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~ 484 (726)
. ++.-.+..|+.+++...- ..-++|.|+|.+
T Consensus 188 ~~~~g~e~~t~~~~~~lf~iin~R~~------------~~k~tIitsn~~ 225 (266)
T PRK06921 188 KPVNGKPRATEWQIEQMYSVLNYRYL------------NHKPILISSELT 225 (266)
T ss_pred cccCCCccCCHHHHHHHHHHHHHHHH------------CCCCEEEECCCC
Confidence 3 445556778888875431 123467889864
No 250
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.47 E-value=4e-05 Score=78.36 Aligned_cols=113 Identities=17% Similarity=0.275 Sum_probs=63.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc---EEeCCCCCCcccccceee----ecCCCchhhhccCceeecCCCeEEeccc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA---VYTSGKGSSAAGLTASVI----RDGSSREFYLEGGAMVLADGGVVCIDEF 440 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~---~~~~g~~~~~~gl~~~~~----~~~~~~~~~~~~G~l~la~~gvl~iDEi 440 (726)
.+++|.|+||||||+|+.+++..+... +... +...+...+. ....+....+. .+..-.+|+|||+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i----t~~~l~~~l~~~~~~~~~~~~~~l~----~l~~~dlLvIDDi 171 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII----TVADIMSAMKDTFSNSETSEEQLLN----DLSNVDLLVIDEI 171 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE----EHHHHHHHHHHHHhhccccHHHHHH----HhccCCEEEEeCC
Confidence 479999999999999999998765321 1100 1111111000 00000001111 1334569999999
Q ss_pred CcCCHH--HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhccc
Q 004862 441 DKMRPE--DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 441 ~~~~~~--~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
+..... .+..|+++++.+. ..+.++|.+||-....+. ..+..+++||+
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~~~~l~--------~~~g~ri~sRl 221 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRS------------SSKRPTGMLTNSNMEEMT--------KLLGERVMDRM 221 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCCHHHHH--------HHhChHHHHHH
Confidence 887644 3557888887643 223568889995322211 12456677776
No 251
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=97.44 E-value=0.00048 Score=77.76 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=100.7
Q ss_pred hhccCceeecCCCeEEecccCcCC-HHHHHHHHHHHhcceEeeeccce----------EEEeeCceEEEEecCCCCCcCC
Q 004862 421 YLEGGAMVLADGGVVCIDEFDKMR-PEDRVAIHEAMEQQTISIAKAGI----------TTVLNSRTSVLAAANPPSGRYD 489 (726)
Q Consensus 421 ~~~~G~l~la~~gvl~iDEi~~~~-~~~~~~L~~~me~~~i~i~~~g~----------~~~l~~~~~iiaa~Np~~g~~~ 489 (726)
.++||++..|+||+|+||--+-+. |.....|.+++.++++.+...+. ...+|.++.||-..++.
T Consensus 322 ~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~~----- 396 (509)
T PF13654_consen 322 LIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDRE----- 396 (509)
T ss_dssp GEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-TT-----
T ss_pred eEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCHH-----
Confidence 468999999999999999988886 56789999999999998876531 12345566666666541
Q ss_pred CccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHh----HccCC
Q 004862 490 DLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYC----RLECH 565 (726)
Q Consensus 490 ~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a----~~~~~ 565 (726)
....-..+.+.+..-|.+...+.+.- ..+.+-+..|+.|. ++.--
T Consensus 397 ---~y~~L~~~D~dF~~lFkv~aef~~~~----------------------------~~~~e~~~~~~~~i~~~~~~~~L 445 (509)
T PF13654_consen 397 ---LYYLLYEYDPDFYKLFKVKAEFDSEM----------------------------PRTEENIRQYARFIASICQKEGL 445 (509)
T ss_dssp ---HHHHS-HHHHHHHHHHSEEEE--SEE----------------------------E--HHHHHHHHHHHHHHHHHHSS
T ss_pred ---HHHHHHHhCHHHHhCCCEEEEccccC----------------------------CCCHHHHHHHHHHHHHHHHhCCC
Confidence 11112234455555565554443222 23333344444433 23334
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 566 PRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 566 p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
|.|+.+|...|.+|...+ .+ ...+.....+..+++-|-..|+....+.|+.+||..|+.
T Consensus 446 ~~~~~~Av~~li~~~~R~---~q---------~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~ 504 (509)
T PF13654_consen 446 PPFDRSAVARLIEYSARL---DQ---------DKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIE 504 (509)
T ss_dssp --BBHHHHHHHHHHHHHC---C----------SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---hC---------CEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 669999999999986543 11 146678889999999999999999999999999999985
No 252
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.42 E-value=0.001 Score=75.29 Aligned_cols=78 Identities=27% Similarity=0.265 Sum_probs=50.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCc----eee-cC--CCeEEecccC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGA----MVL-AD--GGVVCIDEFD 441 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~----l~l-a~--~gvl~iDEi~ 441 (726)
-+||+||||.|||+||+.||+.++.++. .++|+--|....-.-.+ .++ -++ |+ .-.++|||||
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVv---------EINASDeRt~~~v~~kI-~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVV---------EINASDERTAPMVKEKI-ENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEE---------EecccccccHHHHHHHH-HHHHhhccccccCCCcceEEEeccc
Confidence 5899999999999999999998876543 34444333210000000 011 123 22 3478899999
Q ss_pred cCCHHHHHHHHHHHh
Q 004862 442 KMRPEDRVAIHEAME 456 (726)
Q Consensus 442 ~~~~~~~~~L~~~me 456 (726)
-.++.....|+..++
T Consensus 398 Ga~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 398 GAPRAAVDVILSLVK 412 (877)
T ss_pred CCcHHHHHHHHHHHH
Confidence 999887777877776
No 253
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=97.38 E-value=0.00022 Score=57.73 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=46.9
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH-HHHHCCeEEEecCCeEEEecC
Q 004862 654 VNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALI-IMHQRDEVEYKRERRVILRKV 726 (726)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~g~~~~~~~ 726 (726)
.+++...+.. ++.|.+.+ .++++++++| |..+|.+++++++.+| .|.+.|+|.++.+||++|+++
T Consensus 4 ~GLd~~D~~y----L~~l~~~f-~ggPvGl~tl---A~~l~ed~~Tie~v~EPyLiq~G~I~RT~rGR~~T~~a 69 (76)
T PF05491_consen 4 LGLDELDRRY----LKTLIENF-KGGPVGLDTL---AAALGEDKETIEDVIEPYLIQIGFIQRTPRGRVATPKA 69 (76)
T ss_dssp TS-BHHHHHH----HHHHHHCS-TTS-B-HHHH---HHHTTS-HHHHHHTTHHHHHHTTSEEEETTEEEE-HHH
T ss_pred ccCCHHHHHH----HHHHHHHc-CCCCeeHHHH---HHHHCCCHhHHHHHhhHHHHHhhhHhhCccHHHhHHHH
Confidence 3455555544 44454443 3568999999 8889999999999999 899999999999999999763
No 254
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.34 E-value=0.0026 Score=63.19 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=82.3
Q ss_pred ccCchhHHHHHH---HHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 336 IFGHDDVKKAVS---CLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 336 I~G~~~~k~ail---l~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
|.|.+..|++++ .+.+.|- ..-||||+|.-|||||.|.+++......... .-+ .+.
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~-----------pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl------rLV----EV~ 120 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGL-----------PANNVLLWGARGTGKSSLVKALLNEYADEGL------RLV----EVD 120 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCC-----------cccceEEecCCCCChHHHHHHHHHHHHhcCC------eEE----EEc
Confidence 679999999886 3445552 2359999999999999999999765321100 000 011
Q ss_pred ecC-CCchhhhccCce-eecCCCeEEecccCcCC-HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCC---C
Q 004862 413 RDG-SSREFYLEGGAM-VLADGGVVCIDEFDKMR-PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPS---G 486 (726)
Q Consensus 413 ~~~-~~~~~~~~~G~l-~la~~gvl~iDEi~~~~-~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~---g 486 (726)
++. .+-...+ +.+ .....-|+|.|++.-=. .+.-.+|..+||-+ ...-|.++.+-||+|..+ .
T Consensus 121 k~dl~~Lp~l~--~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~---------ve~rP~NVl~YATSNRRHLl~e 189 (287)
T COG2607 121 KEDLATLPDLV--ELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG---------VEGRPANVLFYATSNRRHLLPE 189 (287)
T ss_pred HHHHhhHHHHH--HHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC---------cccCCCeEEEEEecCCcccccH
Confidence 110 0000000 000 12234489999864322 23345677777633 234588999999999732 1
Q ss_pred cCCCccchhhhccCc------hhhhcccCeeeEeccCC
Q 004862 487 RYDDLKSAQDNIDLQ------TTILSRFDLIFIVKDIR 518 (726)
Q Consensus 487 ~~~~~~~~~~~~~l~------~~Ll~RFdli~~l~d~~ 518 (726)
.|.++....+.+.-. -+|-+||.|.+.+.+..
T Consensus 190 ~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~ 227 (287)
T COG2607 190 DMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCD 227 (287)
T ss_pred hhhhCCCcccccChhHHHHHhhchhhhcceeecccCCC
Confidence 222222211111111 23567999888765543
No 255
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.27 E-value=0.00098 Score=67.33 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=49.4
Q ss_pred CeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeee
Q 004862 433 GVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIF 512 (726)
Q Consensus 433 gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~ 512 (726)
.+++|.|.|++..+.|.+|.+-||.- ...|++|-.+|. ...+-+|+.||. |.+
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEkY-------------s~~~RlIl~cns-------------~SriIepIrSRC-l~i 181 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEKY-------------SSNCRLILVCNS-------------TSRIIEPIRSRC-LFI 181 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHHH-------------hcCceEEEEecC-------------cccchhHHhhhe-eEE
Confidence 48999999999999999999999942 246889999994 234778999998 677
Q ss_pred EeccCCChh
Q 004862 513 IVKDIRMYN 521 (726)
Q Consensus 513 ~l~d~~~~~ 521 (726)
.++.+.+++
T Consensus 182 Rvpaps~ee 190 (351)
T KOG2035|consen 182 RVPAPSDEE 190 (351)
T ss_pred eCCCCCHHH
Confidence 777777444
No 256
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.031 Score=59.69 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=42.5
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE-EEEecCCCCCcCCCccchhhhccCchhhhcccCe
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS-VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~-iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
..|++||+.++|+....++|+..||+- |.++. ++.|.||. .+.++++||.-.
T Consensus 108 ~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~~fiL~t~~~~--------------~llpTI~SRC~~ 160 (325)
T PRK06871 108 NKVVYIQGAERLTEAAANALLKTLEEP-------------RPNTYFLLQADLSA--------------ALLPTIYSRCQT 160 (325)
T ss_pred ceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH--------------hCchHHHhhceE
Confidence 459999999999999999999999963 22333 45555542 388899999854
Q ss_pred eeEeccCC
Q 004862 511 IFIVKDIR 518 (726)
Q Consensus 511 i~~l~d~~ 518 (726)
+ .+.+++
T Consensus 161 ~-~~~~~~ 167 (325)
T PRK06871 161 W-LIHPPE 167 (325)
T ss_pred E-eCCCCC
Confidence 4 344444
No 257
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.26 E-value=0.0011 Score=70.20 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=66.8
Q ss_pred cCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCC-CCcCCCccchhhhccCch
Q 004862 424 GGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPP-SGRYDDLKSAQDNIDLQT 502 (726)
Q Consensus 424 ~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~-~g~~~~~~~~~~~~~l~~ 502 (726)
.|.+..|++|++=+=|+-+.+.+....|+.+.++|.+... +....++.+..|||.||+. +..|.. ..-.+
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~~-------~~~~e 296 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFKN-------NKNNE 296 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHhc-------cccch
Confidence 3778888989888889999999999999999999997642 2233467889999999973 222221 12336
Q ss_pred hhhcccCeeeEeccCCChhhhHHHHHHHH
Q 004862 503 TILSRFDLIFIVKDIRMYNQDKLIASHII 531 (726)
Q Consensus 503 ~Ll~RFdli~~l~d~~~~~~d~~i~~~il 531 (726)
+|.+|+. ++.++-.-+-....+|.+.++
T Consensus 297 Af~DRi~-~I~VPY~L~~s~E~kIY~k~~ 324 (358)
T PF08298_consen 297 AFKDRIE-VIKVPYCLRVSEEVKIYEKLI 324 (358)
T ss_pred hhhhheE-EEeccccCCHHHHHHHHHHHh
Confidence 8999994 333444333333345555444
No 258
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.022 Score=65.32 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=78.0
Q ss_pred cccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCC-------chhhhccCceeecCCCeE
Q 004862 363 KLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSS-------REFYLEGGAMVLADGGVV 435 (726)
Q Consensus 363 ~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~-------~~~~~~~G~l~la~~gvl 435 (726)
.......+||.|+||||||++.++++..+...++... ...+.+......++ ......+-.+.+.+-.++
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evd----c~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl 502 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVD----CYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVL 502 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEecc----HHHHhhcccchhHHHHHHHHHHHhhcCceEEEEecccee
Confidence 3445578999999999999999999999998877421 11222221111100 011123445566666677
Q ss_pred EecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEec
Q 004862 436 CIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVK 515 (726)
Q Consensus 436 ~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~ 515 (726)
-||-.+..+-..+..++..|+.--+... ..++.++|+++.. ..+++.+.+-|-..+.++
T Consensus 503 ~id~dgged~rl~~~i~~~ls~e~~~~~--------~~~~ivv~t~~s~-------------~~lp~~i~~~f~~ei~~~ 561 (953)
T KOG0736|consen 503 GIDQDGGEDARLLKVIRHLLSNEDFKFS--------CPPVIVVATTSSI-------------EDLPADIQSLFLHEIEVP 561 (953)
T ss_pred eecCCCchhHHHHHHHHHHHhcccccCC--------CCceEEEEecccc-------------ccCCHHHHHhhhhhccCC
Confidence 7776664444445555555541111111 1257788998853 237777777776666665
Q ss_pred cCCChh
Q 004862 516 DIRMYN 521 (726)
Q Consensus 516 d~~~~~ 521 (726)
.+.+++
T Consensus 562 ~lse~q 567 (953)
T KOG0736|consen 562 ALSEEQ 567 (953)
T ss_pred CCCHHH
Confidence 555443
No 259
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.19 E-value=0.00034 Score=71.52 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=82.8
Q ss_pred hHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCC
Q 004862 324 AYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSS 403 (726)
Q Consensus 324 ~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~ 403 (726)
-++.|-..+.-.++||..+++-++-++-+-..... -+..+-+=+.|.|||||+..++.|++.+-+ .|..|+
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~----~Gl~S~ 142 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYR----GGLRSP 142 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHh----ccccch
Confidence 35678888899999999999999888876422111 133467788999999999999999876533 333334
Q ss_pred cccccceeeecCC---Cchhh-----hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhc
Q 004862 404 AAGLTASVIRDGS---SREFY-----LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 404 ~~gl~~~~~~~~~---~~~~~-----~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~ 457 (726)
.+-...+...=|. -..+. -..|.+...+..++++||.|+|++...+.|...++.
T Consensus 143 ~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 143 FVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred hHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcc
Confidence 3332222111010 00111 012333355678999999999999999999999984
No 260
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.17 E-value=0.00048 Score=68.24 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=67.7
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP 445 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~ 445 (726)
.+.-++|+|+-|+|||++++.+... .|..... +....+.. ..+...-++.+||++.+..
T Consensus 51 ~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~------------~~~~kd~~-----~~l~~~~iveldEl~~~~k 109 (198)
T PF05272_consen 51 NDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSIN------------DFDDKDFL-----EQLQGKWIVELDELDGLSK 109 (198)
T ss_pred CceeeeEecCCcccHHHHHHHHhHH----hccCccc------------cCCCcHHH-----HHHHHhHheeHHHHhhcch
Confidence 3467889999999999999988432 3321100 00011111 1233445899999999999
Q ss_pred HHHHHHHHHHhcceEeeecc--ceEEEeeCceEEEEecCC
Q 004862 446 EDRVAIHEAMEQQTISIAKA--GITTVLNSRTSVLAAANP 483 (726)
Q Consensus 446 ~~~~~L~~~me~~~i~i~~~--g~~~~l~~~~~iiaa~Np 483 (726)
...+.|...+-....++.+. .....++-++.++||||.
T Consensus 110 ~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 110 KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence 99999999999888877654 334677888999999996
No 261
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.16 E-value=0.00048 Score=66.44 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.6
Q ss_pred eEEEECCCchhHHHHHHHHHHhC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
|++|.|+||+|||++++.+...+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 79999999999999999886665
No 262
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=97.14 E-value=0.0041 Score=68.37 Aligned_cols=189 Identities=21% Similarity=0.263 Sum_probs=108.4
Q ss_pred CCeEEecccCcC----CH----HHHHHHHHHHhcceEeeeccceE-EEe-eCceEEEEecCCC-C-CcCCCccchhhhcc
Q 004862 432 GGVVCIDEFDKM----RP----EDRVAIHEAMEQQTISIAKAGIT-TVL-NSRTSVLAAANPP-S-GRYDDLKSAQDNID 499 (726)
Q Consensus 432 ~gvl~iDEi~~~----~~----~~~~~L~~~me~~~i~i~~~g~~-~~l-~~~~~iiaa~Np~-~-g~~~~~~~~~~~~~ 499 (726)
+..++.||+..+ .. .....|+++-+.+.+++.+.+.. ..+ +..++|++++.|. . ..+. +......
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~---~~~~~~~ 226 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREIL---SAEDPEF 226 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHh---hhhcccc
Confidence 346777997654 32 45678888888888887766543 233 5678999999882 2 1111 0001112
Q ss_pred CchhhhcccCeeeEeccCCChhh-----hHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhH-----ccCCCCCC
Q 004862 500 LQTTILSRFDLIFIVKDIRMYNQ-----DKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCR-----LECHPRLS 569 (726)
Q Consensus 500 l~~~Ll~RFdli~~l~d~~~~~~-----d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~-----~~~~p~ls 569 (726)
...-|+.||- |.+++...... +.......+... .+.+........ ....-.++
T Consensus 227 ~~~Gll~RfL--~~~p~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~l~~~~~~~~~~~~~~l~ls 289 (378)
T PF13148_consen 227 RGDGLLARFL--FVIPDSRKGRRFEFPVPEPIDDEALEAY---------------HERIKELLDWPPEDGSDEPIVLELS 289 (378)
T ss_pred cCCChHhhee--eeccCcccccccccCCCCcccHHHHHHH---------------HHHHHHHHhhhhcccCCCCeEEecC
Confidence 4557899995 44444321110 000000000000 011222222221 01112699
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhh-----CCCcccHHHHHHHHHHHhhhhh
Q 004862 570 ESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMK-----LSHVATENEVNEAVRLFTVSTM 643 (726)
Q Consensus 570 ~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~-----~~~~V~~~Dv~~ai~l~~~s~~ 643 (726)
++|.+.+.++|..+........ +...-...-.|.-..++|+|..++-++ ....|+.+++..|+.+.+-.+.
T Consensus 290 ~eA~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~ 365 (378)
T PF13148_consen 290 DEAKELFREWYNELENELRQPG---GDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLE 365 (378)
T ss_pred HHHHHHHHHHHHHHHHHhhccC---CChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHH
Confidence 9999999999998887663210 000011233466788999999999888 7889999999999999876543
No 263
>PHA02774 E1; Provisional
Probab=97.06 E-value=0.0016 Score=73.15 Aligned_cols=97 Identities=22% Similarity=0.222 Sum_probs=61.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCC-HH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR-PE 446 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~-~~ 446 (726)
-.++|+||||||||+++-++.+.+...+. +++. . ...|-+. .+++.-+++|||+..-. .-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi------~fvN-------~--~s~FwLq----pl~d~ki~vlDD~t~~~w~y 495 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVI------SFVN-------S--KSHFWLQ----PLADAKIALLDDATHPCWDY 495 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEE------EEEE-------C--ccccccc----hhccCCEEEEecCcchHHHH
Confidence 37999999999999999999988753332 1110 0 1223233 24566799999983321 12
Q ss_pred HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC
Q 004862 447 DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP 483 (726)
Q Consensus 447 ~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np 483 (726)
....|..+++...|++.+......--...++|.|||.
T Consensus 496 ~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~ 532 (613)
T PHA02774 496 IDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNI 532 (613)
T ss_pred HHHHHHHHcCCCcceeeecccCcccccCCCEEEecCC
Confidence 2346888888777777554332222224578999995
No 264
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.06 E-value=0.00022 Score=75.58 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.+++|+|+||||||+||.+++..+.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987764
No 265
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.02 E-value=0.025 Score=60.25 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=77.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.=++|+|+.|+|||++++.+..+.+....+ .. +...+. . . + ...+.+ -.+...-+++.||+..-....
T Consensus 77 ~~~~l~G~g~nGKStl~~~l~~l~G~~~~~-~~--~~~~~~-~-~-~--~~~f~~----a~l~gk~l~~~~E~~~~~~~~ 144 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLLSNLLGDYATT-AV--ASLKMN-E-F-Q--EHRFGL----ARLEGKRAVIGDEVQKGYRDD 144 (304)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhChhhcc-CC--cchhhh-h-c-c--CCCchh----hhhcCCEEEEecCCCCCcccc
Confidence 458899999999999999999888654310 00 000011 0 0 0 111111 123344578889987543333
Q ss_pred HHHHHHHHhcceEeeeccce-EEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEecc-CCChhhhHH
Q 004862 448 RVAIHEAMEQQTISIAKAGI-TTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKD-IRMYNQDKL 525 (726)
Q Consensus 448 ~~~L~~~me~~~i~i~~~g~-~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d-~~~~~~d~~ 525 (726)
.+.|..+.....+++.+.+. .......+.+|.++|.... -..-+.++.+|+ +++.+.. .+.++.|..
T Consensus 145 ~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~----------~~~~~~a~~RR~-~vi~f~~~~~~~~~d~~ 213 (304)
T TIGR01613 145 ESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPR----------IRGFDGGIKRRL-RIIPFTKVFPGEKKNKA 213 (304)
T ss_pred HHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCc----------cCCCChhheeeE-EEEeccCcCCccccCcc
Confidence 45666666666666654443 2345557889999995211 112356788888 4444332 333344665
Q ss_pred HHHHHH
Q 004862 526 IASHII 531 (726)
Q Consensus 526 i~~~il 531 (726)
+.+.+.
T Consensus 214 l~~kl~ 219 (304)
T TIGR01613 214 LKEDYI 219 (304)
T ss_pred HHHHHH
Confidence 555543
No 266
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.98 E-value=0.00042 Score=63.62 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=19.3
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
+.-+++++|+||+|||++++.+++..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999987765
No 267
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0042 Score=66.11 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=40.6
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCee
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLI 511 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli 511 (726)
.-|++||+.+.|+....++|+..||+= |.++.+|-.|+.+ ..+.+++.||...+
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~~~-------------~~lLpTIrSRCq~i 167 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISAQP-------------ARLPATIRSRCQRL 167 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEECCh-------------hhCchHHHhhheEe
Confidence 359999999999999999999999962 2344454445421 23789999999654
Q ss_pred e
Q 004862 512 F 512 (726)
Q Consensus 512 ~ 512 (726)
-
T Consensus 168 ~ 168 (319)
T PRK08769 168 E 168 (319)
T ss_pred e
Confidence 4
No 268
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.0044 Score=66.54 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=43.6
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE-EEEecCCCCCcCCCccchhhhccCchhhhcccCe
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS-VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~-iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
.-|++||+.++|+....++|+..||+= |.++. |+.|.||. .+.++++||.-
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~LLpTI~SRcq- 184 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSARID--------------RLLPTILSRCR- 184 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEECChh--------------hCcHHHHhcCE-
Confidence 349999999999999999999999952 23344 45555542 38889999994
Q ss_pred eeEeccCCC
Q 004862 511 IFIVKDIRM 519 (726)
Q Consensus 511 i~~l~d~~~ 519 (726)
.+.+.+++.
T Consensus 185 ~i~~~~~~~ 193 (342)
T PRK06964 185 QFPMTVPAP 193 (342)
T ss_pred EEEecCCCH
Confidence 555555553
No 269
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0028 Score=67.92 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=25.6
Q ss_pred cCCCeEEecccCcCCHHHHHHHHHHHhcc
Q 004862 430 ADGGVVCIDEFDKMRPEDRVAIHEAMEQQ 458 (726)
Q Consensus 430 a~~gvl~iDEi~~~~~~~~~~L~~~me~~ 458 (726)
+...|++||+++.|++..+++|+..||+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep 140 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEP 140 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhC
Confidence 44569999999999999999999999964
No 270
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.019 Score=60.91 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCcchHHHHHHhh--cCCccCchh--HHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHH
Q 004862 309 QEEIEKFKKFASQPDAYKTVCSKI--APSIFGHDD--VKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFL 384 (726)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~si--~p~I~G~~~--~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la 384 (726)
.++++.=+.........+.|++|| -|..+.... .-.+-+..|+- ++.|++=.||-+||||++-
T Consensus 176 ~~el~~~R~~Ft~deWidVLirsiGmePa~~e~rtkwhll~RlvplVE-------------nNyN~cElGPr~TGKshvY 242 (683)
T COG4930 176 PKELEEGRGCFTLDEWIDVLIRSIGMEPAVYEPRTKWHLLARLVPLVE-------------NNYNMCELGPRQTGKSHVY 242 (683)
T ss_pred HHHHHhhhccccHHHHHHHHHHhcCCCccccChhhhHHHHHHHHHHhh-------------CCcchhhcCCCccCcccee
Confidence 344433333333345567777775 566665432 12233333433 3478999999999999997
Q ss_pred HHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC---CHHHHHHHHHHHhcceEe
Q 004862 385 KFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM---RPEDRVAIHEAMEQQTIS 461 (726)
Q Consensus 385 ~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~---~~~~~~~L~~~me~~~i~ 461 (726)
+- .+|.....+|...+.+.|+-... .-.+|.+-+- .++.+||+..+ +++....|...|+.|.+
T Consensus 243 ke---vSpn~~liSGGqttvAnLFYNma--------trqiGlvg~w--DvVaFDEVagirFkdkDg~qilKDYMaSGsf- 308 (683)
T COG4930 243 KE---VSPNVRLISGGQTTVANLFYNMA--------TRQIGLVGLW--DVVAFDEVAGIRFKDKDGMQILKDYMASGSF- 308 (683)
T ss_pred hc---cCCceEEeeCCcccHHHHHHHHh--------hccccceeee--eeeeehhhccccccCccHHHHHHHHHhcCCc-
Confidence 65 45777777777766655543211 1124443333 37889998876 34556788999999984
Q ss_pred eeccceEEEeeCceEEEEecC
Q 004862 462 IAKAGITTVLNSRTSVLAAAN 482 (726)
Q Consensus 462 i~~~g~~~~l~~~~~iiaa~N 482 (726)
++... ...++.+++.-.|
T Consensus 309 -~RG~~--~v~~~ASlVFvGN 326 (683)
T COG4930 309 -ERGDK--KVVSDASLVFVGN 326 (683)
T ss_pred -ccccc--cccccceEEEEec
Confidence 34433 3344455555444
No 271
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.82 E-value=0.0061 Score=61.37 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=113.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE----EeCCCCCCcccccceeeecCCC-chhhhc-------cCceee----cC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV----YTSGKGSSAAGLTASVIRDGSS-REFYLE-------GGAMVL----AD 431 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~----~~~g~~~~~~gl~~~~~~~~~~-~~~~~~-------~G~l~l----a~ 431 (726)
--+.++|+-|+|||.+.|++....+.+. +......+..++..+++.+-.. ..|... .+...+ ..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 3689999999999999998777666542 2233333333322222211100 111111 010111 12
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhcc--CchhhhcccC
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNID--LQTTILSRFD 509 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~--l~~~Ll~RFd 509 (726)
+-++++||.+.+..+..+.|...++--. ......+++-...|.. ..... --..+-.|++
T Consensus 132 ~v~l~vdEah~L~~~~le~Lrll~nl~~----------~~~~~l~ivL~Gqp~L---------~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 132 PVVLMVDEAHDLNDSALEALRLLTNLEE----------DSSKLLSIVLIGQPKL---------RPRLRLPVLRELEQRID 192 (269)
T ss_pred CeEEeehhHhhhChhHHHHHHHHHhhcc----------cccCceeeeecCCccc---------chhhchHHHHhhhheEE
Confidence 2478999999999999888877765211 0011256666666631 11111 1235667888
Q ss_pred eeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 004862 510 LIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRR 589 (726)
Q Consensus 510 li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~ 589 (726)
+-+.+++....+.-..|..+ +.-| ..-.|.+++++...+...
T Consensus 193 ir~~l~P~~~~~t~~yl~~~---------------------------Le~a-~~~~~l~~~~a~~~i~~~---------- 234 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHR---------------------------LEGA-GLPEPLFSDDALLLIHEA---------- 234 (269)
T ss_pred EEEecCCcChHHHHHHHHHH---------------------------Hhcc-CCCcccCChhHHHHHHHH----------
Confidence 87777666544322222221 1112 124567889988888764
Q ss_pred hhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 004862 590 QANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN 632 (726)
Q Consensus 590 ~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~ 632 (726)
..+.||....+...|.-.|-..+++.|+...+.
T Consensus 235 ----------sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 235 ----------SQGIPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred ----------hccchHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 234679999999999888888888888876554
No 272
>PHA02624 large T antigen; Provisional
Probab=96.77 E-value=0.0032 Score=71.11 Aligned_cols=119 Identities=11% Similarity=0.109 Sum_probs=70.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCH--
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP-- 445 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~-- 445 (726)
--+||+||||||||+++.++.+.+...+.. .+... ....|-+. .++|.-+.+||++..-..
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vls---------VNsPt----~ks~FwL~----pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLN---------VNCPP----DKLNFELG----CAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEE---------eeCCc----chhHHHhh----hhhhceEEEeeecccccccc
Confidence 479999999999999999999988443321 11000 01233333 355667888888743222
Q ss_pred -----H----HHHHHHHHHhcc-eEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEec
Q 004862 446 -----E----DRVAIHEAMEQQ-TISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVK 515 (726)
Q Consensus 446 -----~----~~~~L~~~me~~-~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~ 515 (726)
. ...-|..+|+-. .|++.+......--.=.+.|.|+|- ..+|..+.-||-.++.+.
T Consensus 495 ~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne--------------y~iP~T~~~Rf~~~~~F~ 560 (647)
T PHA02624 495 KDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE--------------YLIPQTVKARFAKVLDFK 560 (647)
T ss_pred ccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC--------------cccchhHHHHHHHhcccc
Confidence 1 125677777755 5555443221110111247889983 127888888998666554
Q ss_pred cC
Q 004862 516 DI 517 (726)
Q Consensus 516 d~ 517 (726)
..
T Consensus 561 ~k 562 (647)
T PHA02624 561 PK 562 (647)
T ss_pred cc
Confidence 43
No 273
>PF13173 AAA_14: AAA domain
Probab=96.73 E-value=0.0042 Score=57.01 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=44.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC---CcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP---IAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~---~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~ 444 (726)
..++|.|+.|+|||++++.+++... .-+|.+........+ .+....++..+. ......++||||++.++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL-----ADPDLLEYFLEL---IKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH-----hhhhhHHHHHHh---hccCCcEEEEehhhhhc
Confidence 4689999999999999988876543 223322111110000 000000111110 11145789999999997
Q ss_pred HHHHHHHHHHHhc
Q 004862 445 PEDRVAIHEAMEQ 457 (726)
Q Consensus 445 ~~~~~~L~~~me~ 457 (726)
. ....+....+.
T Consensus 75 ~-~~~~lk~l~d~ 86 (128)
T PF13173_consen 75 D-WEDALKFLVDN 86 (128)
T ss_pred c-HHHHHHHHHHh
Confidence 4 45566666553
No 274
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.0066 Score=65.28 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=44.1
Q ss_pred cCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce-EEEEecCCCCCcCCCccchhhhccCchhhhccc
Q 004862 430 ADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT-SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 430 a~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~-~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
+...|++||+.++|+....++|+..||+= |.++ -|+.|.||. .+.+.+.||.
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTIrSRC 159 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEP-------------PENTWFFLACREPA--------------RLLATLRSRC 159 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHHhcc
Confidence 34459999999999999999999999962 2233 355555542 3889999999
Q ss_pred CeeeEeccCC
Q 004862 509 DLIFIVKDIR 518 (726)
Q Consensus 509 dli~~l~d~~ 518 (726)
-.+ .++.++
T Consensus 160 q~~-~~~~~~ 168 (334)
T PRK07993 160 RLH-YLAPPP 168 (334)
T ss_pred ccc-cCCCCC
Confidence 754 444444
No 275
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.72 E-value=0.0052 Score=62.12 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.+++|+||.|+|||+|++.+......
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 68999999999999999998887743
No 276
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.71 E-value=0.0023 Score=57.84 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=47.4
Q ss_pred HHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhC
Q 004862 325 YKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.+.|..++...++||..+++.++-++-+-.... .-+..+-+-+.|+||||||.+++.|++.+
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 456778888899999999998888876542211 11334677899999999999999999764
No 277
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.005 Score=60.79 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=25.1
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
|..|.||+||||+|||+++|-+++++...
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 44899999999999999999999876543
No 278
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.013 Score=62.46 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=42.5
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE-EEEecCCCCCcCCCccchhhhccCchhhhcccCe
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS-VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~-iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
.-|++||+.+.|+....++|+..+|+= |.++. |+.|.||. .+.+.+.||.-.
T Consensus 109 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTI~SRCq~ 161 (319)
T PRK06090 109 YRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTHNQK--------------RLLPTIVSRCQQ 161 (319)
T ss_pred ceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHHhccee
Confidence 359999999999999999999999962 22344 44555542 378899999964
Q ss_pred eeEeccCC
Q 004862 511 IFIVKDIR 518 (726)
Q Consensus 511 i~~l~d~~ 518 (726)
+ .++.+.
T Consensus 162 ~-~~~~~~ 168 (319)
T PRK06090 162 W-VVTPPS 168 (319)
T ss_pred E-eCCCCC
Confidence 3 344444
No 279
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.63 E-value=0.00073 Score=73.22 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+|++|+|||+|+-.....+|.
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCc
Confidence 46999999999999999998887775
No 280
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.017 Score=60.30 Aligned_cols=55 Identities=27% Similarity=0.275 Sum_probs=40.9
Q ss_pred CCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce-EEEEecCCCCCcCCCccchhhhccCchhhhcccC
Q 004862 431 DGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT-SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD 509 (726)
Q Consensus 431 ~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~-~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd 509 (726)
..-|++||+.++|..+.+++|+..||+= |.++ -|+.|.||. .+.++++||.-
T Consensus 95 ~~kv~ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~~~~--------------~ll~TI~SRcq 147 (290)
T PRK05917 95 PYKIYIIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSAKPQ--------------RLPPTIRSRSL 147 (290)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeCChh--------------hCcHHHHhcce
Confidence 3459999999999999999999999962 2223 355566542 37889999986
Q ss_pred eee
Q 004862 510 LIF 512 (726)
Q Consensus 510 li~ 512 (726)
.+.
T Consensus 148 ~~~ 150 (290)
T PRK05917 148 SIH 150 (290)
T ss_pred EEE
Confidence 444
No 281
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.37 E-value=0.045 Score=59.61 Aligned_cols=107 Identities=10% Similarity=0.086 Sum_probs=56.3
Q ss_pred CccCChhHHHHHHHHHHHHHhhhCCCc----------------ccHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHH
Q 004862 599 PIPITVRQLEAIVRLSEALAKMKLSHV----------------ATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAH 662 (726)
Q Consensus 599 ~~~~t~R~L~~lirla~a~A~l~~~~~----------------V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~ 662 (726)
..-+.+|.+..+.|.|..+|.+..+.. |..+++..++.-+..+-..-... .+...+.-
T Consensus 360 a~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~s~~------slplqqki 433 (529)
T KOG2227|consen 360 APSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSARSRE------SLPLQQKI 433 (529)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhhhhhh------hcCcccch
Confidence 345788999999998888887665543 44556655553322221100000 00000111
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-------cCCCHHHHHHHHHHHHHCCeEE
Q 004862 663 EIKQAETQIKRRIPIGNQISERRLIDDLTR-------MGMNESIIRRALIIMHQRDEVE 714 (726)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~l~~l~~~g~i~ 714 (726)
.+-.+...++. ++..++..++++...+ ..++..++-.+-..|..+|.+.
T Consensus 434 ilctl~~l~r~---~kkd~s~~eL~e~Y~k~C~~~~I~~ld~tEF~~i~~ilet~gil~ 489 (529)
T KOG2227|consen 434 ILCTLVLLIRG---NKKDVSIAELYEAYLKACQKREIAPLDRTEFLSICDILETQGILR 489 (529)
T ss_pred hHHHHHHHHhc---ccccccHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHhhhHHH
Confidence 11112222221 1235666666554432 5778888888888888888775
No 282
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.35 E-value=0.0087 Score=56.64 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.6
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
+++++|+||+|||+++..++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999866653
No 283
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.20 E-value=0.027 Score=60.26 Aligned_cols=96 Identities=22% Similarity=0.238 Sum_probs=60.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
--++|+|||+||||+++-.+.+.+...+. |++. ....|-+.| +++..+.+||+.....-+-
T Consensus 263 nClvi~GPPdTGKS~F~~SLi~Fl~GkVi------Sf~N---------s~ShFWLqP----L~d~Ki~llDDAT~~cW~Y 323 (432)
T PF00519_consen 263 NCLVIYGPPDTGKSMFCMSLIKFLKGKVI------SFVN---------SKSHFWLQP----LADAKIALLDDATYPCWDY 323 (432)
T ss_dssp SEEEEESSCCCSHHHHHHHHHHHHTSEEE-------GGG---------TTSCGGGGG----GCT-SSEEEEEE-HHHHHH
T ss_pred cEEEEECCCCCchhHHHHHHHHHhCCEEE------EecC---------CCCcccccc----hhcCcEEEEcCCcccHHHH
Confidence 46999999999999999888887765554 3211 123444554 6777899999976644332
Q ss_pred H-HHHHHHHhcceEeeeccce-EEEeeCceEEEEecCC
Q 004862 448 R-VAIHEAMEQQTISIAKAGI-TTVLNSRTSVLAAANP 483 (726)
Q Consensus 448 ~-~~L~~~me~~~i~i~~~g~-~~~l~~~~~iiaa~Np 483 (726)
. .-|..+++-..|++..... ...+.. .++|.|+|-
T Consensus 324 ~D~ylRNaLDGN~vsiD~KHkap~Qik~-PPLlITsN~ 360 (432)
T PF00519_consen 324 IDTYLRNALDGNPVSIDCKHKAPVQIKC-PPLLITSNI 360 (432)
T ss_dssp HHHHTHHHHCTSEEEEEESSSEEEEEE----EEEEESS
T ss_pred HHHHHHhccCCCeeeeeccCCCceEeec-CceEEecCC
Confidence 2 3467888888888754322 222222 357788884
No 284
>PF05729 NACHT: NACHT domain
Probab=96.19 E-value=0.0084 Score=57.07 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.1
Q ss_pred EEEECCCchhHHHHHHHHHHhC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~ 391 (726)
++|.|+||+|||++++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999886443
No 285
>PRK13695 putative NTPase; Provisional
Probab=95.94 E-value=0.036 Score=53.77 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.3
Q ss_pred eEEEECCCchhHHHHHHHHHHh
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~ 390 (726)
+++|+|+||+|||+|++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999987554
No 286
>PRK10536 hypothetical protein; Provisional
Probab=95.89 E-value=0.021 Score=58.41 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=19.9
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..++++||+|||||+||.+++.
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999866
No 287
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.68 E-value=0.0075 Score=56.18 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEECCCchhHHHHHHHHHHhCC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
|+++|+||+|||++++.+++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998776
No 288
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.65 E-value=0.021 Score=58.06 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEECCCchhHHHHHHHHHHh
Q 004862 370 VLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~ 390 (726)
+++.|.||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 468899999999999988776
No 289
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.0086 Score=55.16 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=26.4
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
|-..|||+.|-||||||+++.+++....-..+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i 36 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYI 36 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceE
Confidence 44479999999999999999999987654433
No 290
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.58 E-value=0.0079 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEECCCchhHHHHHHHHHHhCCC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
|+|.|+||+|||++++.+++...-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 789999999999999999987543
No 291
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.45 E-value=0.017 Score=57.30 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=21.3
Q ss_pred ecCCCeEEecccCcCCHHHHHHHHHHHhc
Q 004862 429 LADGGVVCIDEFDKMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 429 la~~gvl~iDEi~~~~~~~~~~L~~~me~ 457 (726)
.....+++|||...++......|++....
T Consensus 91 ~~~~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp -TSTSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred CCcccEEEEecccccCHHHHHHHHHHHHh
Confidence 34456999999999999888888877654
No 292
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=95.42 E-value=0.046 Score=56.72 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=60.1
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHH
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDR 448 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~ 448 (726)
.++++|||+||||.|+.+|+...|.--.+..... .|.+. ...++-+++.||. .|.++..
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~n~----------------nF~f~----d~~~k~l~~weE~-~~~~~~v 173 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWNNN----------------NFPFQ----DCFNKRLIWWEEP-NMYPDEV 173 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHSCCEEEEECTTT----------------CCCCC----CCCCECEEECTCG-GCCTTCH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCcccEeccCCC----------------CCChh----hhhhccEEEeccc-CccHHHH
Confidence 6999999999999999999988765322111111 11111 0112346677776 5566667
Q ss_pred HHHHHHHhcceEeeeccceEEEeeCceEEEEecCC
Q 004862 449 VAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP 483 (726)
Q Consensus 449 ~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np 483 (726)
+.+...+.-..+.+.........-.++.||.++|-
T Consensus 174 e~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~ 208 (271)
T PF01057_consen 174 ETAKMILGGTPVRVDVKNKDSEELERTPVIITSNN 208 (271)
T ss_dssp HHHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECC
T ss_pred HHHHHHhCCCceEeecccCCceEecCCceEEEecc
Confidence 77888887777777544443333447888889985
No 293
>PHA00729 NTP-binding motif containing protein
Probab=95.39 E-value=0.011 Score=59.37 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.+++|+|+||||||+||.+++..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 294
>PRK14532 adenylate kinase; Provisional
Probab=95.39 E-value=0.016 Score=56.97 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.2
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+++|+|+||+|||++++.+++..+....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i 29 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 6999999999999999999987765444
No 295
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.33 Score=55.61 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
-||||.|++|+|||.|++++.+.....
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~ 458 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKD 458 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccc
Confidence 589999999999999999998876543
No 296
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.20 E-value=0.04 Score=65.82 Aligned_cols=84 Identities=20% Similarity=0.253 Sum_probs=47.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCC---cEEeCCCCCCcccccceeeecC-----CC-chhh--hccCceeecCCCeEEe
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPI---AVYTSGKGSSAAGLTASVIRDG-----SS-REFY--LEGGAMVLADGGVVCI 437 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~---~~~~~g~~~~~~gl~~~~~~~~-----~~-~~~~--~~~G~l~la~~gvl~i 437 (726)
-++|.|+||||||++++++...+.. .+...... |..+....+. .| ..|. ...+.-.+....+++|
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApT----g~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIv 445 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALS----GKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVI 445 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCc----HHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEE
Confidence 4789999999999999998654322 22211110 0000001000 00 0111 1222223456679999
Q ss_pred cccCcCCHHHHHHHHHHHh
Q 004862 438 DEFDKMRPEDRVAIHEAME 456 (726)
Q Consensus 438 DEi~~~~~~~~~~L~~~me 456 (726)
||+.+++......|+....
T Consensus 446 DEasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 446 DEAGMVGSRQMARVLKEAE 464 (744)
T ss_pred ECcccCCHHHHHHHHHHHH
Confidence 9999999888777776544
No 297
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.19 E-value=0.081 Score=60.18 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.6
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
-+||.||||||||+.++.+++.+...+.
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 6889999999999999999998876544
No 298
>PRK13947 shikimate kinase; Provisional
Probab=95.13 E-value=0.021 Score=55.10 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=25.6
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
||+|+|+||+|||++++.+++.++..++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~i 30 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFI 30 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999998877665
No 299
>PRK08118 topology modulation protein; Reviewed
Probab=95.13 E-value=0.017 Score=55.74 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=23.7
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.|+++|+||+|||++|+.+++.+.-..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 4899999999999999999987655433
No 300
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.09 E-value=0.044 Score=63.38 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=22.0
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhc
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~ 457 (726)
-.+++|||..+++......|++++..
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~ 285 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPP 285 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCC
Confidence 35999999999999988888887753
No 301
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.05 E-value=0.023 Score=55.24 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=26.8
Q ss_pred ccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhC
Q 004862 336 IFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 336 I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
++|.+...+.+.-.+-.... ....+++|+|++|+|||++++.+....
T Consensus 2 fvgR~~e~~~l~~~l~~~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQS---------GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS--------------EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHc---------CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46777776666655521100 112689999999999999999876544
No 302
>PRK04296 thymidine kinase; Provisional
Probab=95.04 E-value=0.037 Score=54.57 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=16.8
Q ss_pred eEEEECCCchhHHHHHHHHHH
Q 004862 369 NVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~ 389 (726)
-+|++||||+|||+++..++.
T Consensus 4 i~litG~~GsGKTT~~l~~~~ 24 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAY 24 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 478899999999988765543
No 303
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.97 E-value=0.018 Score=62.66 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
-+++.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999998887766
No 304
>PRK14530 adenylate kinase; Provisional
Probab=94.96 E-value=0.024 Score=57.06 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=24.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.+|+|+|+||+|||++++.+++..+....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 47999999999999999999988765443
No 305
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.96 E-value=0.023 Score=54.73 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=25.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.+++|+|+||+|||++++.+++.++..++
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 58999999999999999999998765544
No 306
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.93 E-value=0.083 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-++++||+|+|||++++++....+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999998766654
No 307
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.92 E-value=0.046 Score=59.78 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=48.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc---EEeCCCCCCcccccceeeecCCC--chhhh------------c---cCce
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA---VYTSGKGSSAAGLTASVIRDGSS--REFYL------------E---GGAM 427 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~---~~~~g~~~~~~gl~~~~~~~~~~--~~~~~------------~---~G~l 427 (726)
.++.+.|+.|||||.+++++...+... +..++.. |+.|..+.+..| ..|.+ . .-.-
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~t----g~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~ 98 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPT----GIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRE 98 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhccccceEEEecch----HHHHHhccCCcchHHhcCccccccccccccccccchhhh
Confidence 789999999999999999987666432 3322211 111111101000 00000 0 0011
Q ss_pred eecCCCeEEecccCcCCHHHHHHHHHHHh
Q 004862 428 VLADGGVVCIDEFDKMRPEDRVAIHEAME 456 (726)
Q Consensus 428 ~la~~gvl~iDEi~~~~~~~~~~L~~~me 456 (726)
.+.+-.+++|||+..++......+...|.
T Consensus 99 ~l~~~~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 99 RLRKADVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred hhhhheeeecccccchhHHHHHHHHHhhh
Confidence 23344699999999999888777766665
No 308
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.022 Score=55.53 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
.|+|+|+||+|||++|+.+++.++-..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 589999999999999999999865443
No 309
>PRK03839 putative kinase; Provisional
Probab=94.91 E-value=0.024 Score=55.29 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=24.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.|+|+|+||+|||++++.+++.+...+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~i 29 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYV 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999998765544
No 310
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.90 E-value=0.022 Score=53.70 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.1
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+|+|+|+||+|||++++.++..++...+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999999999987765544
No 311
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.85 E-value=0.043 Score=51.86 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=25.2
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
+..--++|.||+|+|||+|++.++.+.+..
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~ 56 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPT 56 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCC
Confidence 344679999999999999999999887653
No 312
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=94.84 E-value=2.6 Score=47.36 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=44.8
Q ss_pred cCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC
Q 004862 424 GGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP 483 (726)
Q Consensus 424 ~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np 483 (726)
.|+|..++.|++=+-|.-+.+.+....|+.+-++|.+.-.+ ....++.+-.|+|.+|-
T Consensus 249 ~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~~--~~~~i~~d~lIvahsNe 306 (649)
T COG2766 249 SGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGTE--GIGAIPFDGLIVAHSNE 306 (649)
T ss_pred cchhhcccchHHHHHHHHhCcHHHHHHHhcccccCccCCCC--CcCccccCceEEeecCc
Confidence 47778888898888888888888888888888888864322 23456777789999995
No 313
>PRK07261 topology modulation protein; Provisional
Probab=94.79 E-value=0.029 Score=54.29 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.2
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.|+++|+||+|||+||+.++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999987654
No 314
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.78 E-value=0.029 Score=54.76 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.0
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCc
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
|+++|+||+|||++++.++...+-.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 7899999999999999999877543
No 315
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.78 E-value=0.0083 Score=58.97 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
--+.++||+|+|||+|+|.+..+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 579999999999999999987543
No 316
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=94.76 E-value=2.1 Score=46.49 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=82.5
Q ss_pred hhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCC-CCCH-HHHHHHHHHHH
Q 004862 504 ILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHP-RLSE-SASAKLRDQYV 581 (726)
Q Consensus 504 Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p-~ls~-ea~~~l~~~y~ 581 (726)
-+++||+++.+.+....+.|..|++.+........-.. ..++.+. ...++ -.| .+++ .+.+.|.+++.
T Consensus 111 ~~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVR----TKvD~Dl-----~~~~~-~~p~~f~~e~~L~~IR~~c~ 180 (376)
T PF05049_consen 111 KFYRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVR----TKVDSDL-----YNERR-RKPRTFNEEKLLQEIRENCL 180 (376)
T ss_dssp TGGG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE------HHHHH-----HHHHC-C-STT--HHTHHHHHHHHHH
T ss_pred cccccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEE----ecccccH-----hhhhc-cCCcccCHHHHHHHHHHHHH
Confidence 37799999999999999999999988877644322111 1112111 11111 122 2333 33445555443
Q ss_pred HH-HHHHhhhh----cccCC--CCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhh-hhhhcCc---
Q 004862 582 QI-RKDMRRQA----NETGE--AAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTM-DAARSGI--- 650 (726)
Q Consensus 582 ~~-R~~~~~~~----~~~~~--~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~-~~~~~~~--- 650 (726)
+- ++.+.... ..+-+ ..++|.=...|+.=+-....++-+..-..++++-++.=...++...- ....++.
T Consensus 181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw~~Al~s~~~a~ 260 (376)
T PF05049_consen 181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIWLEALKSAAVAT 260 (376)
T ss_dssp HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHHHHHHHT--BSS
T ss_pred HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 11110000 00000 01121111112221223344454444556776666544433333221 1122221
Q ss_pred ccccccc-HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 004862 651 NQQVNLT-AEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALI 705 (726)
Q Consensus 651 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 705 (726)
....+++ ......+.+.+...+..+ +++.++|.+-|+..|.+.+++...|+
T Consensus 261 iP~~g~~~~~D~~~L~~~l~~Yr~~F----GLDd~SL~~lA~~~g~~~~~lk~~ik 312 (376)
T PF05049_consen 261 IPVPGLSSACDLEILEKCLNQYRSSF----GLDDESLQKLAQDTGKPVEELKSIIK 312 (376)
T ss_dssp -CCCSS--HHHHHHHHHHHHHHHHHT----T-SHHHHHHHHHHTTS-HHHHHCTSS
T ss_pred CCCcccccccCHHHHHHHHHHHHHHh----CCCHHHHHHHHHHhCCCHHHHHHHHc
Confidence 1112332 445556666677667665 57788888889899998888876654
No 317
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=94.69 E-value=0.21 Score=63.88 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=84.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC-CCcEEe-CCCCCCcccccceeeecCCCchhhhccCcee--ecCCCeEEecccCcC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA-PIAVYT-SGKGSSAAGLTASVIRDGSSREFYLEGGAMV--LADGGVVCIDEFDKM 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~-~~~~~~-~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~--la~~gvl~iDEi~~~ 443 (726)
..++++|++|+|||.++....... ++.++. +....+...++...... ..-...++..- ....-++|+||++.-
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~---~~~k~~~~~~~~~~~~~~~~f~ddinmp 204 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIES---KLDKRRSGNYGPPLGKKLVLFVDDINMP 204 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHH---HHHHhcccCCCCCCCceeEEEEeccCCc
Confidence 579999999999999998765543 333332 00000000011000000 00001111110 011238999999875
Q ss_pred CHH------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCC-CcCCCccchhhhccCchhhhcccCeeeEecc
Q 004862 444 RPE------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPS-GRYDDLKSAQDNIDLQTTILSRFDLIFIVKD 516 (726)
Q Consensus 444 ~~~------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~-g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d 516 (726)
-.+ ....|++.+|.+.+.-...+.. ..--++.+++|+||+. |+. .+++.+++.|..+. .+
T Consensus 205 ~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~-~~i~~i~~~~a~~~~~~gr~----------~i~~r~~r~f~~~~--~~ 271 (1395)
T KOG3595|consen 205 ALDKYGDQPPIELLRQMLEHGGFYDRKKSEW-VEIENVQLVGAMNPPGGGRN----------DITERFLRHFLIVS--LN 271 (1395)
T ss_pred hhhhcCCccHHHHHHHHHHhceeecccccce-eEEeeeEEEeecCCCCCccC----------cccHHHHHHeeeEe--eC
Confidence 333 4578899999877654333333 2334789999999743 344 38888888886554 44
Q ss_pred CCChhhhHHHHHHHHHHh
Q 004862 517 IRMYNQDKLIASHIIKIH 534 (726)
Q Consensus 517 ~~~~~~d~~i~~~il~~~ 534 (726)
.++.+.-..|..+++..|
T Consensus 272 ~~~~~sl~~if~~~~~~~ 289 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTGH 289 (1395)
T ss_pred CCChhhHHHHHHHHHhcc
Confidence 555555667777777655
No 318
>PRK00625 shikimate kinase; Provisional
Probab=94.68 E-value=0.029 Score=54.34 Aligned_cols=28 Identities=25% Similarity=0.467 Sum_probs=24.6
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+|+|+|.||+|||++++.+++.+...++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~i 29 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFF 29 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6999999999999999999988765544
No 319
>PRK14709 hypothetical protein; Provisional
Probab=94.65 E-value=0.58 Score=52.82 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=68.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.=++|+|+-|.|||++++.+..+++.... + .+...++... .+. .. .+...+...-+++.+|.+.-..-.
T Consensus 206 ~~~~l~G~G~NGKSt~~~~i~~llG~~~~-~---~~~~~~~~~~-~~~--~~----~~lA~L~Gkrlv~~~E~~~g~~~~ 274 (469)
T PRK14709 206 ALVFVFGGGGNGKSVFLNVLAGILGDYAT-T---AAMDTFTASK-HDR--HP----TDLAMLRGARLVTASETEEGRAWA 274 (469)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhhhcc-c---CCHHHHhhcc-ccC--Cc----hhhHhhcCCeEEEeecCCcccccC
Confidence 44778899999999999999988764211 0 0111111110 000 00 000112223356678876522212
Q ss_pred HHHHHHHHhcceEeeeccc-eEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHH
Q 004862 448 RVAIHEAMEQQTISIAKAG-ITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLI 526 (726)
Q Consensus 448 ~~~L~~~me~~~i~i~~~g-~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i 526 (726)
-..+..+.-.-.|+....+ ....+...+.++.++|-.-. ...-+.++.+|+ +++.+... ....|+.+
T Consensus 275 ~~~iK~ltGGD~i~ar~~~k~~f~f~p~~kl~~~~N~~P~----------~~d~d~g~~RR~-~iIPF~~~-~~~~D~~l 342 (469)
T PRK14709 275 EARIKQMTGGDTITARFMRQDFFEFVPQFKLTIVGNHKPR----------LRNVDEAARRRF-NIVPFTRK-PARPDPDL 342 (469)
T ss_pred HHHHHhhhCCCcEEeecccCCceEEEeeeEEEEEcCCCCc----------cCCCCceeEeeE-EEEecCCC-ccccCccH
Confidence 2333333333345443322 22344556788888885211 112345778887 44444433 33445555
Q ss_pred HHHH
Q 004862 527 ASHI 530 (726)
Q Consensus 527 ~~~i 530 (726)
.+.+
T Consensus 343 ~~KL 346 (469)
T PRK14709 343 EAKL 346 (469)
T ss_pred HHHH
Confidence 5443
No 320
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.63 E-value=0.27 Score=52.00 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=42.3
Q ss_pred CCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEE-ecCCCCCcCCCccchhhhccCchhhhcccC
Q 004862 431 DGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLA-AANPPSGRYDDLKSAQDNIDLQTTILSRFD 509 (726)
Q Consensus 431 ~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iia-a~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd 509 (726)
+.-|++||+.++|....+++|+..||+- |..+.+|- +.|| ..+.+++.||.-
T Consensus 90 ~~KvvII~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~~~--------------~kll~TI~SRc~ 142 (299)
T PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTKNI--------------NKVLPTIVSRCQ 142 (299)
T ss_pred CceEEEEecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeCCh--------------HhChHHHHhCeE
Confidence 4569999999999999999999999962 33444444 4443 237788999985
Q ss_pred eeeEeccCC
Q 004862 510 LIFIVKDIR 518 (726)
Q Consensus 510 li~~l~d~~ 518 (726)
. +.+.+.+
T Consensus 143 ~-~~f~~l~ 150 (299)
T PRK07132 143 V-FNVKEPD 150 (299)
T ss_pred E-EECCCCC
Confidence 4 3344443
No 321
>PF13245 AAA_19: Part of AAA domain
Probab=94.60 E-value=0.032 Score=46.11 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=17.0
Q ss_pred eEEEECCCchhHH-HHHHHHHHhC
Q 004862 369 NVLLLGDPSTAKS-QFLKFVEKTA 391 (726)
Q Consensus 369 ~vLL~G~pGtGKt-~la~~i~~~~ 391 (726)
-+++.|+|||||| ++++.++.+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566999999999 5566666554
No 322
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.59 E-value=0.024 Score=51.50 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.3
Q ss_pred EEEECCCchhHHHHHHHHHHhC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~ 391 (726)
|+|.|.||+|||++|+.+++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998875
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.59 E-value=0.03 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=20.1
Q ss_pred EEEECCCchhHHHHHHHHHHhC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~ 391 (726)
+.+.|+||+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998875
No 324
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.52 E-value=0.043 Score=55.72 Aligned_cols=29 Identities=21% Similarity=0.507 Sum_probs=25.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..++|+|+||+|||++++.+++.......
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~i 35 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHI 35 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 56999999999999999999988765554
No 325
>PRK13949 shikimate kinase; Provisional
Probab=94.50 E-value=0.035 Score=53.61 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+|+|+|+||+|||++++.+++.+...++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~i 30 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFI 30 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 6999999999999999999988765444
No 326
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.50 E-value=0.076 Score=65.03 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=51.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC---CcEEeCCCCCCc-------ccccceeeecCCCchhh--hccCceeecCCCeE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP---IAVYTSGKGSSA-------AGLTASVIRDGSSREFY--LEGGAMVLADGGVV 435 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~---~~~~~~g~~~~~-------~gl~~~~~~~~~~~~~~--~~~G~l~la~~gvl 435 (726)
--+++.|.+|||||++++.+..... ..+......... .|+.+..+ ..|. ...|...+..+.++
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TI-----as~ll~~~~~~~~l~~~~vl 472 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTL-----SSWELRWNQGRDQLDNKTVF 472 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeH-----HHHHhhhccCccCCCCCcEE
Confidence 3579999999999999999866442 223221111000 01111111 1121 12343445556799
Q ss_pred EecccCcCCHHHHHHHHHHHhc
Q 004862 436 CIDEFDKMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 436 ~iDEi~~~~~~~~~~L~~~me~ 457 (726)
+|||..+++......|+...+.
T Consensus 473 VIDEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 473 VLDEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred EEECcccCCHHHHHHHHHHHHh
Confidence 9999999999988888887763
No 327
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.49 E-value=0.064 Score=65.25 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=47.2
Q ss_pred eEEEECCCchhHHHHHHHHHHhC---CCcEEeCCCCCCcccccceeeecC-----CC-chh--hhccCceeecCCCeEEe
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTA---PIAVYTSGKGSSAAGLTASVIRDG-----SS-REF--YLEGGAMVLADGGVVCI 437 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~---~~~~~~~g~~~~~~gl~~~~~~~~-----~~-~~~--~~~~G~l~la~~gvl~i 437 (726)
.+++.|.||||||++++.+.... +..+...... |..+....+. .| ..| ....|...+....+++|
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApT----GkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIV 439 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALS----GIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVI 439 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCc----HHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEE
Confidence 46799999999999998875543 2223221110 1101001000 00 011 11223334556679999
Q ss_pred cccCcCCHHHHHHHHHHHh
Q 004862 438 DEFDKMRPEDRVAIHEAME 456 (726)
Q Consensus 438 DEi~~~~~~~~~~L~~~me 456 (726)
||..+++......|+...+
T Consensus 440 DEASMv~~~~m~~LL~~a~ 458 (988)
T PRK13889 440 DEAGMVGTRQLERVLSHAA 458 (988)
T ss_pred ECcccCCHHHHHHHHHhhh
Confidence 9999999888777776554
No 328
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.48 E-value=0.099 Score=60.72 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.0
Q ss_pred CeEEecccCcCCHHHHHHHHHHHhc
Q 004862 433 GVVCIDEFDKMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 433 gvl~iDEi~~~~~~~~~~L~~~me~ 457 (726)
.+++|||..+++......|++++..
T Consensus 267 dvlIvDEaSMvd~~lm~~ll~al~~ 291 (615)
T PRK10875 267 DVLVVDEASMVDLPMMARLIDALPP 291 (615)
T ss_pred CeEEEChHhcccHHHHHHHHHhccc
Confidence 6999999999999988888888764
No 329
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.073 Score=58.70 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=65.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCcee---ecCCCeEEecccCcC-
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMV---LADGGVVCIDEFDKM- 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~---la~~gvl~iDEi~~~- 443 (726)
..+||.||||+|||.||-.++..+...+...-......|++.+.. ...-.+.+. .+.-.++++|+|+.+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaK-------c~~i~k~F~DAYkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAK-------CAHIKKIFEDAYKSPLSIIVVDDIERLL 611 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHH-------HHHHHHHHHHhhcCcceEEEEcchhhhh
Confidence 689999999999999999998776554321100001123321110 000011111 123358999999885
Q ss_pred -----CHHHHHHHHHHHh----cceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEe
Q 004862 444 -----RPEDRVAIHEAME----QQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIV 514 (726)
Q Consensus 444 -----~~~~~~~L~~~me----~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l 514 (726)
.|..-+.+++++- .+- ..| .+..|++||... +..+. -.+++-|+-.+.+
T Consensus 612 D~vpIGPRfSN~vlQaL~VllK~~p----pkg------~kLli~~TTS~~--------~vL~~----m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 612 DYVPIGPRFSNLVLQALLVLLKKQP----PKG------RKLLIFGTTSRR--------EVLQE----MGILDCFSSTIHV 669 (744)
T ss_pred cccccCchhhHHHHHHHHHHhccCC----CCC------ceEEEEecccHH--------HHHHH----cCHHHhhhheeec
Confidence 3333344444442 111 111 146788888631 11111 2356778888888
Q ss_pred ccCCCh
Q 004862 515 KDIRMY 520 (726)
Q Consensus 515 ~d~~~~ 520 (726)
+.....
T Consensus 670 pnl~~~ 675 (744)
T KOG0741|consen 670 PNLTTG 675 (744)
T ss_pred CccCch
Confidence 776643
No 330
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=94.36 E-value=0.25 Score=38.71 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCe
Q 004862 657 TAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERR 720 (726)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~ 720 (726)
+....++++.|+.... .+..++..+| |+.+|+++.++-+.+++|.+.|+|...+.+.
T Consensus 3 t~~~e~YL~~Iy~l~~----~~~~v~~~~i---A~~L~vs~~tvt~ml~~L~~~GlV~~~~y~g 59 (60)
T PF01325_consen 3 TESEEDYLKAIYELSE----EGGPVRTKDI---AERLGVSPPTVTEMLKRLAEKGLVEYEPYKG 59 (60)
T ss_dssp SCHHHHHHHHHHHHHH----CTSSBBHHHH---HHHHTS-HHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CcHHHHHHHHHHHHHc----CCCCccHHHH---HHHHCCChHHHHHHHHHHHHCCCEEecCCCC
Confidence 4456677777766544 3567888888 8888999999999999999999999876554
No 331
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.36 E-value=0.069 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..++|.|+.|+|||++++.+++.++.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 57999999999999999999988754
No 332
>PRK14531 adenylate kinase; Provisional
Probab=94.36 E-value=0.041 Score=53.90 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..++++|+||+|||++++.++....-..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3699999999999999999988765433
No 333
>PRK06762 hypothetical protein; Provisional
Probab=94.34 E-value=0.039 Score=52.95 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=22.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
-++|+|+||+|||++|+.+++..+.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~ 29 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRG 29 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999877543
No 334
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.26 E-value=0.069 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.+++++|++|+|||++++++....+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 68999999999999999999887663
No 335
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.24 E-value=0.071 Score=63.46 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=46.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC-----CcEEeCCCCCCcc-cccceeeecCCCch--hhhccCce------eecCCCe
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP-----IAVYTSGKGSSAA-GLTASVIRDGSSRE--FYLEGGAM------VLADGGV 434 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~-----~~~~~~g~~~~~~-gl~~~~~~~~~~~~--~~~~~G~l------~la~~gv 434 (726)
.++|.|+||||||++++++...+. ..+........++ .+....-....|-. ....++.. ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 689999999999999998865543 2233221111110 01000000000100 00111111 0124579
Q ss_pred EEecccCcCCHHHHHHHHHHHh
Q 004862 435 VCIDEFDKMRPEDRVAIHEAME 456 (726)
Q Consensus 435 l~iDEi~~~~~~~~~~L~~~me 456 (726)
++|||..+++......|++++.
T Consensus 420 lIvDEaSMvd~~~~~~Ll~~~~ 441 (720)
T TIGR01448 420 LIVDESSMMDTWLALSLLAALP 441 (720)
T ss_pred EEEeccccCCHHHHHHHHHhCC
Confidence 9999999999888777777654
No 336
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.22 E-value=0.042 Score=51.72 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.0
Q ss_pred EEEECCCchhHHHHHHHHHHhCCC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
++|+|+||+|||++++.+++....
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 689999999999999999887543
No 337
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.19 E-value=0.047 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
.|+|+|+||+|||++++.++.......
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~ 27 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPH 27 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 389999999999999999998765443
No 338
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.17 E-value=0.045 Score=53.76 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=24.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..+.|+||+|+|||++++.++...+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 47899999999999999999887765444
No 339
>PRK06217 hypothetical protein; Validated
Probab=94.08 E-value=0.049 Score=53.31 Aligned_cols=28 Identities=7% Similarity=0.143 Sum_probs=24.2
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.|+|+|.||+|||++++.+++.+....+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 5999999999999999999988765443
No 340
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.05 E-value=0.046 Score=57.65 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=42.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.-+-|+|++++|||++++.++....... ++..++.. | ...++ +.....++..++|||+...++..
T Consensus 194 ~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~----------~l~~sw~~---T-~n~le-~~a~~~nd~~l~lDE~~~~~~~~ 258 (286)
T PF06048_consen 194 FGFHLYGQSSSGKTTALQLAASVWGNPD----------GLIRSWNS---T-DNGLE-RTAAAHNDLPLVLDELSQADPKD 258 (286)
T ss_pred eEEEEEeCCCCCHHHHHHHhhhhCcCch----------hhhhcchh---h-HHHHH-HHHHHcCCcceEehhccccchhH
Confidence 4577899999999999999886654432 12111110 0 11111 11234456789999999988775
Q ss_pred HHHH
Q 004862 448 RVAI 451 (726)
Q Consensus 448 ~~~L 451 (726)
...+
T Consensus 259 ~~~~ 262 (286)
T PF06048_consen 259 VGSI 262 (286)
T ss_pred HHHH
Confidence 4333
No 341
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.05 E-value=0.061 Score=57.82 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=24.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.++|++|++|+|||++++++....|.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999888875
No 342
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.04 E-value=0.042 Score=52.59 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.2
Q ss_pred EEEECCCchhHHHHHHHHHHhCCC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
++|+|+||+|||++++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 478999999999999999988753
No 343
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.04 E-value=0.052 Score=54.74 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=15.8
Q ss_pred EEEECCCchhHHHHHHHHHHh
Q 004862 370 VLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~ 390 (726)
.++.||||||||+++..+...
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 899999999999776655443
No 344
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.91 E-value=0.042 Score=53.75 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=21.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-++++|+||+|||++++.+++...
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987654
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.90 E-value=0.046 Score=53.05 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
..++|.|+||+|||++++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 358999999999999999999887643
No 346
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.90 E-value=0.065 Score=51.91 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=25.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.+|+|+|++|+|||++++.++..+...++
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~v 33 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 47999999999999999999988765544
No 347
>PRK14526 adenylate kinase; Provisional
Probab=93.86 E-value=0.059 Score=54.06 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=23.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+++|+|+||+|||++++.++...+....
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 5899999999999999999977654433
No 348
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.83 E-value=0.056 Score=42.55 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..+|.|++|+|||+|+.++.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999987654
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.83 E-value=0.062 Score=52.28 Aligned_cols=83 Identities=18% Similarity=0.112 Sum_probs=49.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc---EEeCCCCCCcccccceeeecC--CC-chhh-hccCceeecCCCeEEeccc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA---VYTSGKGSSAAGLTASVIRDG--SS-REFY-LEGGAMVLADGGVVCIDEF 440 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~---~~~~g~~~~~~gl~~~~~~~~--~~-~~~~-~~~G~l~la~~gvl~iDEi 440 (726)
-.+.|+|++|+|||+|++.++.+.+.. +...|. ..+..... .+ |+.. +.-......+..++++||-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-------~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEP 98 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-------TPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEP 98 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-------EEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 678999999999999999999886542 222221 11111110 01 1110 1111112346689999996
Q ss_pred C-cCCHHHHHHHHHHHhc
Q 004862 441 D-KMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 441 ~-~~~~~~~~~L~~~me~ 457 (726)
. .+++..+..+.+++.+
T Consensus 99 ts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 99 SAYLDIEQRLNAARAIRR 116 (177)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 5 5788888877777764
No 350
>PRK14528 adenylate kinase; Provisional
Probab=93.78 E-value=0.062 Score=52.80 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
++++.|+||+|||++++.+++.......
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~i 30 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQI 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 5899999999999999999877654443
No 351
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.66 E-value=0.051 Score=52.85 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=21.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-++|+|+||+|||++++.++...+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988764
No 352
>PRK14700 recombination factor protein RarA; Provisional
Probab=93.60 E-value=0.34 Score=50.55 Aligned_cols=51 Identities=6% Similarity=0.011 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 566 PRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 566 p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
..+++++.+.|... ..+..|...+++++|...+.-.....||.+++.+++.
T Consensus 63 ~~i~~~al~~ia~~--------------------a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~ 113 (300)
T PRK14700 63 FKIDDGLYNAMHNY--------------------NEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVG 113 (300)
T ss_pred CCcCHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHh
Confidence 35899999999886 3478899999999876433111112389999988774
No 353
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.58 E-value=0.062 Score=51.48 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=26.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.++.|+|.+|+|||++.+.+++.+...++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 57999999999999999999999887665
No 354
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.54 E-value=0.05 Score=54.93 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
-=|-|+||+|||||+|++.++.+...+
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 458999999999999999999876543
No 355
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.54 E-value=0.053 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.7
Q ss_pred cCcceEEEECCCchhHHHHHHHHH
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~ 388 (726)
+....+|++|+||+|||++|+.++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 445679999999999999999874
No 356
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.50 E-value=1.9 Score=47.79 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEe
Q 004862 664 IKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYK 716 (726)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~ 716 (726)
++++...+-... +..+|+.+|.+.+. |+++.++...++.|.+...+...
T Consensus 222 ~k~i~~~l~~~~--g~~~s~~~la~~l~--~is~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 222 MKRILRFLASNI--GSPISYSSLARELK--GISKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred HHHHHHHHHhhc--CCccCHHHHHHHHh--ccchHHHHHHHHHHHHhhheEEe
Confidence 445555544332 45789999955554 89999999999999888877643
No 357
>PLN02200 adenylate kinase family protein
Probab=93.49 E-value=0.082 Score=53.94 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..++++|+||+|||++++.+++..+-..
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~h 71 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKH 71 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 5789999999999999999988765443
No 358
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.44 E-value=0.069 Score=53.55 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=22.7
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
|+++|+||+|||++++.+++.......
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i 28 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI 28 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 799999999999999999886654433
No 359
>PTZ00301 uridine kinase; Provisional
Probab=93.43 E-value=0.21 Score=50.06 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=19.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.=|.|.|+||+|||+||+.++..+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 347889999999999999886543
No 360
>PRK02496 adk adenylate kinase; Provisional
Probab=93.38 E-value=0.066 Score=52.37 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
.++++|+||+|||++++.+++.....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~ 28 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIP 28 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58999999999999999999876543
No 361
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.37 E-value=0.23 Score=47.41 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.2
Q ss_pred eEEEECCCchhHHHHHHHHHH
Q 004862 369 NVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+++.|.||||||++++.+..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 589999999999999999983
No 362
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.34 E-value=0.079 Score=49.38 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.2
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
|.+.|+||+|||++++.++..+.-..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~ 28 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYL 28 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 689999999999999999987765544
No 363
>PRK13946 shikimate kinase; Provisional
Probab=93.33 E-value=0.084 Score=51.72 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.7
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+..+|+|+|.||+|||++++.+++.+...++
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 3468999999999999999999998866655
No 364
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.30 E-value=0.066 Score=47.91 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=20.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.|+++|++|+|||+|++.++....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999986543
No 365
>PRK08233 hypothetical protein; Provisional
Probab=93.27 E-value=0.065 Score=52.06 Aligned_cols=25 Identities=4% Similarity=0.012 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-|.+.|+||+|||++++.++..++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578899999999999999998775
No 366
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.26 E-value=0.088 Score=52.98 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.2
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.|+++|+||+|||++++.+++..+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i 29 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999988765544
No 367
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.26 E-value=0.11 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.++|++|++|+|||++++++....|.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCC
Confidence 68999999999999999999877664
No 368
>PRK05439 pantothenate kinase; Provisional
Probab=93.21 E-value=0.16 Score=53.92 Aligned_cols=81 Identities=12% Similarity=0.231 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHHHhcCc------chHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCC
Q 004862 303 GAAAFTQEEIEKFKKFASQP------DAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDP 376 (726)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~------~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~p 376 (726)
....+|++|++.++.+...- ++|-=|+..|.-..-+......++--. .+. . ..+...-|.+.|+|
T Consensus 25 ~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~f-l~~-~-------~~~~~~iIgIaG~~ 95 (311)
T PRK05439 25 TPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQF-LGK-N-------GQKVPFIIGIAGSV 95 (311)
T ss_pred CCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hcc-c-------CCCCCEEEEEECCC
Confidence 35568888888887764322 334334444333333333333333222 221 0 01223678899999
Q ss_pred chhHHHHHHHHHHhCC
Q 004862 377 STAKSQFLKFVEKTAP 392 (726)
Q Consensus 377 GtGKt~la~~i~~~~~ 392 (726)
|+|||++++.+..++.
T Consensus 96 gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 96 AVGKSTTARLLQALLS 111 (311)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988664
No 369
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.19 E-value=0.54 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.7
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.+++.|++|+|||++++++....+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhC
Confidence 699999999999999998865544
No 370
>PRK06547 hypothetical protein; Provisional
Probab=93.17 E-value=0.15 Score=49.42 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=21.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..|++.|++|+|||++++.+++..+
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688889999999999999988754
No 371
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=93.16 E-value=0.061 Score=60.07 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=25.5
Q ss_pred ccCcceEEEECCCchhHHHHHHHHHHhCC
Q 004862 364 LRGDVNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 364 ~r~~~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
+...-|+|++||+|||||.|+|.++.+.|
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 44557999999999999999999998876
No 372
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.07 E-value=0.3 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=21.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+|++||+|+|||++++++....+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3699999999999999999877554
No 373
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.96 E-value=0.073 Score=56.80 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
--+.|+||+|||||+++|.||.+..
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999999999999999997654
No 374
>PLN02459 probable adenylate kinase
Probab=92.91 E-value=0.13 Score=52.87 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=24.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.+++|+|+||+||+++++.+++...-...
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i 58 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI 58 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 67999999999999999999987654443
No 375
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.85 E-value=0.098 Score=50.42 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=24.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+++|+|.||+|||++++.++..+...++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~ 31 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFV 31 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6899999999999999999988766554
No 376
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=92.84 E-value=0.49 Score=53.51 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=26.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS 398 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~ 398 (726)
.-++|+|+-|+|||++...|..++++.-.++
T Consensus 231 k~~~l~G~G~nGKstf~~li~~llG~~n~~s 261 (517)
T COG3378 231 KLFWLYGPGGNGKSTFVDLISNLLGRYNVTS 261 (517)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHhccchhcc
Confidence 4689999999999999999999998865543
No 377
>PRK13948 shikimate kinase; Provisional
Probab=92.83 E-value=0.11 Score=50.85 Aligned_cols=29 Identities=21% Similarity=0.045 Sum_probs=25.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.+|+|+|.+|+|||++++.+++.+...++
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg~~~i 39 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALMLHFI 39 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 68999999999999999999998876654
No 378
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.83 E-value=0.084 Score=49.07 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.1
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCc
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
+.|+||+|+|||+|++.+++..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6899999999999999999886643
No 379
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.82 E-value=0.096 Score=55.57 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..++++|+||+|||++++.+++..+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~ 28 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPK 28 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCC
Confidence 35888999999999999999988753
No 380
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=92.80 E-value=0.21 Score=40.00 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCeEEEe-cCCeEEEecC
Q 004862 667 AETQIKRRIPIGNQISERRLIDDLTRMGMN--ESIIRRALIIMHQRDEVEYK-RERRVILRKV 726 (726)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~~~l~~l~~~g~i~~~-~~g~~~~~~~ 726 (726)
|++.|.+. +.+++...|.+.+...|.+ +.++.+.|+.|.++|++.+. ..|+.||.+|
T Consensus 3 IL~~L~~~---~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g~~G~~iT~~G 62 (66)
T PF08461_consen 3 ILRILAES---DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVGRQGRIITEKG 62 (66)
T ss_pred HHHHHHHc---CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccCCcccccCHHH
Confidence 45555543 4589999999999876655 69999999999999977754 4477787654
No 381
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=92.74 E-value=0.27 Score=38.10 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEE
Q 004862 665 KQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~ 723 (726)
..|++.+++. ..++.++| +..+|+|+.++++.|..|.+.|.+....+|..+.
T Consensus 3 ~~Il~~l~~~----~~~s~~el---a~~~~VS~~TiRRDl~~L~~~g~i~r~~GG~~~~ 54 (57)
T PF08220_consen 3 QQILELLKEK----GKVSVKEL---AEEFGVSEMTIRRDLNKLEKQGLIKRTHGGAVLN 54 (57)
T ss_pred HHHHHHHHHc----CCEEHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEEcCEEEeC
Confidence 3455656542 45677777 7788999999999999999999999998887653
No 382
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.74 E-value=0.077 Score=51.58 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-++|+||+|+|||++++.++...+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4889999999999999999987654
No 383
>PRK14527 adenylate kinase; Provisional
Probab=92.72 E-value=0.085 Score=52.00 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-++++|+||+|||++++.+++...
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987654
No 384
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.70 E-value=0.033 Score=57.12 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||.|+|||+|+|+++.+++
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 6789999999999999999998664
No 385
>PLN02674 adenylate kinase
Probab=92.70 E-value=0.12 Score=52.99 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
.+++|+|+||+||+++++.+++...-..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~h 59 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCH 59 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 5799999999999999999998765433
No 386
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.69 E-value=0.094 Score=52.42 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=22.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-+.|+|++|+|||+|++.++..++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5689999999999999999998876
No 387
>PRK14529 adenylate kinase; Provisional
Probab=92.64 E-value=0.092 Score=52.99 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.2
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
+++|+|+||+|||++++.+++......
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~ 28 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAH 28 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 589999999999999999988775443
No 388
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.61 E-value=0.098 Score=49.16 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=24.4
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCcEEe
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIAVYT 397 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~~~~ 397 (726)
|-+-|+||||||++++-++..+.-..+.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999988877663
No 389
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.56 E-value=0.091 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-+.|+||+|+|||+|++.++...+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5699999999999999999999876
No 390
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.53 E-value=0.093 Score=50.19 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=17.9
Q ss_pred EEEECCCchhHHHHHHHHHHh
Q 004862 370 VLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~ 390 (726)
|.|+|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 391
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.46 E-value=0.58 Score=49.14 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=41.1
Q ss_pred cCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE-EEEecCCCCCcCCCccchhhhccCchhhhccc
Q 004862 430 ADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS-VLAAANPPSGRYDDLKSAQDNIDLQTTILSRF 508 (726)
Q Consensus 430 a~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~-iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RF 508 (726)
+..-|++||+.++|+....++|+..+|+= |.++. |+.|.|+. .+.+.+.||.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~--------------~lLpTI~SRc 155 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN--------------KVLPTIKSRT 155 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hCchHHHHcc
Confidence 34459999999999999999999999962 22333 44455532 3788999999
Q ss_pred Ceee
Q 004862 509 DLIF 512 (726)
Q Consensus 509 dli~ 512 (726)
-.+-
T Consensus 156 q~i~ 159 (290)
T PRK07276 156 QIFH 159 (290)
T ss_pred eeee
Confidence 6444
No 392
>PRK04040 adenylate kinase; Provisional
Probab=92.41 E-value=0.12 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..++++|.||+|||++++.+++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 3589999999999999999988875
No 393
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.39 E-value=0.087 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEECCCchhHHHHHHHHHHhC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~ 391 (726)
++++|.||+|||++++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998876
No 394
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.33 E-value=0.17 Score=54.01 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.+++++|++|+|||++++++....|.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCc
Confidence 79999999999999999999887764
No 395
>PRK06851 hypothetical protein; Provisional
Probab=92.19 E-value=0.092 Score=56.85 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
--++|.|+||||||+|++.++..+
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Confidence 359999999999999999987765
No 396
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.07 E-value=0.19 Score=53.25 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.++|++|++|+|||++++++....+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999987754
No 397
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.02 E-value=0.15 Score=50.59 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=23.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
.-+++.|.||+|||++++.++...+...
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4689999999999999999988765443
No 398
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.01 E-value=0.14 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.-+.|+|.+|+|||++++.++..+
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998865
No 399
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.99 E-value=0.12 Score=50.03 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..++|+|+||+|||++++.++..+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999987664
No 400
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.93 E-value=0.13 Score=51.35 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..|.|.|++|+|||+|++.++..+
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999887
No 401
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=91.91 E-value=0.12 Score=59.14 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=26.7
Q ss_pred ccCcceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 364 LRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 364 ~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
++..-++|+.|++|+|||+|+|+++.+.|..
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g 446 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPWG 446 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCccC
Confidence 4444789999999999999999999988753
No 402
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.91 E-value=0.21 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
-.++|+|++|+|||+|+.++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999988653
No 403
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.88 E-value=0.28 Score=51.56 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=21.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-|-|.|++|+|||++++.+..++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5688999999999999999877764
No 404
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=91.83 E-value=0.33 Score=42.50 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEec
Q 004862 663 EIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
..+++++.|+.......+++.++| ++++|++.++++.+|+.|...|.||.+-
T Consensus 48 ~~~~Vl~~i~~~~~~~~Gv~v~~I---~~~l~~~~~~v~~al~~L~~eG~IYsTi 99 (102)
T PF08784_consen 48 LQDKVLNFIKQQPNSEEGVHVDEI---AQQLGMSENEVRKALDFLSNEGHIYSTI 99 (102)
T ss_dssp HHHHHHHHHHC----TTTEEHHHH---HHHSTS-HHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHHhcCCCCCcccHHHH---HHHhCcCHHHHHHHHHHHHhCCeEeccc
Confidence 356778888873333458999999 4555999999999999999999999763
No 405
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.79 E-value=0.12 Score=51.10 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=20.4
Q ss_pred EEEECCCchhHHHHHHHHHHhC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~ 391 (726)
|.|.|++|+|||++++.++.++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999886
No 406
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=91.79 E-value=0.13 Score=56.96 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=25.7
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
....|+|+.||.|||||.|.|.+..+.|.
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhccCcc
Confidence 34489999999999999999999988874
No 407
>PRK01184 hypothetical protein; Provisional
Probab=91.78 E-value=0.16 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=18.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-|+|+|+||+|||++++. ++...-
T Consensus 3 ~i~l~G~~GsGKsT~a~~-~~~~g~ 26 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI-AREMGI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHH-HHHcCC
Confidence 488999999999999984 444433
No 408
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.76 E-value=0.1 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.1
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
++|.|.||+|||++|+.+++++...+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 789999999999999999988765443
No 409
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=91.74 E-value=6.7 Score=44.95 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
-.+.|.|+.|||||++...+++.+...
T Consensus 223 qr~~I~gg~G~GKT~l~~~lak~~~ad 249 (578)
T TIGR01043 223 GTAAIPGPFGSGKTVTQHQLAKWSDAD 249 (578)
T ss_pred CEEEEecCCCCCHHHHHHHHHhcCCCC
Confidence 358999999999999999998765443
No 410
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.74 E-value=0.17 Score=52.84 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
-++++.|++|+|||++++++....|..
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred eEEEEECCCccccchHHHHHhhhcccc
Confidence 689999999999999999998887765
No 411
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.68 E-value=0.08 Score=55.99 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.+.|+|+-|.|||+|+-..-..+|.
T Consensus 67 GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 67 GLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred eEEEECCCCccHHHHHHHHHhhCCc
Confidence 4999999999999999888777764
No 412
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=91.65 E-value=0.84 Score=48.08 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=18.4
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+++||-|+|||.+......
T Consensus 50 nsviiigprgsgkT~li~~~Ls 71 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLS 71 (408)
T ss_pred CceEEEccCCCCceEeeHHHHh
Confidence 4699999999999998876543
No 413
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.62 E-value=0.11 Score=51.29 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.-.-|+||+|||||+++|.+-+.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhh
Confidence 45678899999999999998764
No 414
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.60 E-value=0.085 Score=48.66 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-++.|+|++|+|||+|+++++...+
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 6899999999999999999876543
No 415
>PF13479 AAA_24: AAA domain
Probab=91.59 E-value=0.13 Score=51.71 Aligned_cols=26 Identities=19% Similarity=0.589 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT 397 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~ 397 (726)
+.+||+|+||+|||+++..+ |+..+.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~i 29 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFI 29 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEE
Confidence 78999999999999998876 666665
No 416
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.56 E-value=0.13 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.3
Q ss_pred eEEEECCCchhHHHHHHHHHH
Q 004862 369 NVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~ 389 (726)
.|+++|.||+|||+|.+++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 417
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.55 E-value=0.15 Score=49.67 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.++|++|+|||++++.++.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999987754
No 418
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.50 E-value=0.12 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEECCCchhHHHHHHHHHHhCC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
|+|+|.||+|||++|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999987653
No 419
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.50 E-value=0.13 Score=50.10 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.6
Q ss_pred EEEECCCchhHHHHHHHHH
Q 004862 370 VLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~ 388 (726)
+|+.||||||||+|+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~ 20 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFL 20 (187)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7899999999999987653
No 420
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.49 E-value=0.24 Score=52.93 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.|+|+.|++|+|||++++++....
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 421
>PRK04182 cytidylate kinase; Provisional
Probab=91.49 E-value=0.18 Score=48.78 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=24.1
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.|+|.|.||+|||++++.++..+...++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~i 29 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHV 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEe
Confidence 4899999999999999999988765544
No 422
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.48 E-value=0.16 Score=44.92 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.2
Q ss_pred ceEEEECCCchhHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~ 388 (726)
.-++|+||+|+|||+|++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 568999999999999999975
No 423
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=91.31 E-value=1.3 Score=34.94 Aligned_cols=43 Identities=30% Similarity=0.518 Sum_probs=33.2
Q ss_pred CCCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeE
Q 004862 676 PIGNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRV 721 (726)
Q Consensus 676 ~~~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~ 721 (726)
..+..+ +..+| ++.+|+|+.++++++..|.+.|+|....++++
T Consensus 19 ~~g~~lps~~~l---a~~~~vsr~tvr~al~~L~~~g~i~~~~~~G~ 62 (64)
T PF00392_consen 19 PPGDRLPSEREL---AERYGVSRTTVREALRRLEAEGLIERRPGRGT 62 (64)
T ss_dssp -TTSBE--HHHH---HHHHTS-HHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CCCCEeCCHHHH---HHHhccCCcHHHHHHHHHHHCCcEEEECCceE
Confidence 334455 66766 88899999999999999999999998766654
No 424
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=91.29 E-value=0.5 Score=35.75 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEe
Q 004862 667 AETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYK 716 (726)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~ 716 (726)
.+.+++-....+.+++..+| +++.|+++.++.+.|..|.+.|++.+.
T Consensus 5 al~iL~~l~~~~~~~t~~ei---a~~~gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 5 ALRILEALAESGGPLTLSEI---ARALGLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHHCHHCTBSCEEHHHH---HHHHTS-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHcCCCCCCHHHH---HHHHCcCHHHHHHHHHHHHHCcCeecC
Confidence 34444433334456777777 888899999999999999999999764
No 425
>PLN02165 adenylate isopentenyltransferase
Probab=91.28 E-value=0.23 Score=52.96 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..++|+||+|+|||+|+..++...+..+.
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eII 72 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEII 72 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCcee
Confidence 47999999999999999999998765443
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.27 E-value=0.16 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 6799999999999999999987653
No 427
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.26 E-value=0.21 Score=49.93 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.1
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.-++++|+||+|||+++..++.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~ 34 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAV 34 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999977654
No 428
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.22 E-value=0.2 Score=48.07 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=23.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
-|.+.|+||+|||++++.+++.++...+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~ 29 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLI 29 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 3789999999999999999987765544
No 429
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=91.21 E-value=0.64 Score=55.87 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=53.9
Q ss_pred EEEECCCchhHHHHHHHHHHhCCCcEEeCCCC--CCccccccee---eecCCCchhh--hccCceeecCCCeEEecccCc
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKG--SSAAGLTASV---IRDGSSREFY--LEGGAMVLADGGVVCIDEFDK 442 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~--~~~~gl~~~~---~~~~~~~~~~--~~~G~l~la~~gvl~iDEi~~ 442 (726)
+|++|+||+|||..+..++......++-.... -+...+...+ ........+. .....-.-.+.+|+++||+|-
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 79999999999999999998877655421110 0110000000 0000000000 000001112345999999999
Q ss_pred CCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC
Q 004862 443 MRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP 483 (726)
Q Consensus 443 ~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np 483 (726)
|..+++..+.++.. +. . .....++.++|-
T Consensus 440 ~~~~dRg~v~~l~~-----l~------~-ks~~Piv~~cnd 468 (871)
T KOG1968|consen 440 MFGEDRGGVSKLSS-----LC------K-KSSRPLVCTCND 468 (871)
T ss_pred ccchhhhhHHHHHH-----HH------H-hccCCeEEEecC
Confidence 98877655444321 10 1 334678999994
No 430
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.20 E-value=0.14 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
-=+.|.||+|||||+++|.||.+-
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 347799999999999999998654
No 431
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.12 E-value=0.17 Score=48.42 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+++|+|+||+|||+|+++++..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999988643
No 432
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.07 E-value=0.18 Score=49.81 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999987654
No 433
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.07 E-value=0.17 Score=51.44 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=23.3
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..-.+.|+|++|+|||+|++.++.+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 337899999999999999999987654
No 434
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=91.04 E-value=0.51 Score=48.49 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=39.5
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE-EEEecCCCCCcCCCccchhhhccCchhhhcccCe
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS-VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~-iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
.-|++|+++++|.....++|+..+|+= |.++. ++.|.|+ ..+.+.+.||.-.
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~--------------~~lLpTI~SRCq~ 141 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNE--------------NNILNTILSRCVQ 141 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECCh--------------HhCchHhhhheee
Confidence 359999999999999999999999962 22334 4445543 2388999999754
Q ss_pred e
Q 004862 511 I 511 (726)
Q Consensus 511 i 511 (726)
+
T Consensus 142 ~ 142 (261)
T PRK05818 142 Y 142 (261)
T ss_pred e
Confidence 3
No 435
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.03 E-value=0.18 Score=50.44 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
-.+.|+|++|+|||+|++.++.+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999998654
No 436
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=91.01 E-value=0.17 Score=48.95 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.7
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+|+|+||+|||+|++.+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999988764
No 437
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.95 E-value=0.18 Score=50.47 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999987543
No 438
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=90.89 E-value=0.19 Score=50.37 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999987643
No 439
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.87 E-value=0.31 Score=52.14 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=21.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+++++|+||+|||++++++...
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999864
No 440
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.84 E-value=0.19 Score=48.08 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=49.3
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCCCc---EEeCCCCCCcccc------cceeeecCCCchhh-hccCceeecCCCeE
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAPIA---VYTSGKGSSAAGL------TASVIRDGSSREFY-LEGGAMVLADGGVV 435 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~~~---~~~~g~~~~~~gl------~~~~~~~~~~~~~~-~~~G~l~la~~gvl 435 (726)
..-.+.|+|++|+|||+|++.++.+.+.. ++..|........ ..+...+-..|+.. +.-......+.-++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 33789999999999999999999887642 2222211110000 00000000001000 00000123355789
Q ss_pred EecccC-cCCHHHHHHHHHHHhc
Q 004862 436 CIDEFD-KMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 436 ~iDEi~-~~~~~~~~~L~~~me~ 457 (726)
++||-. .+++..+..+.+++.+
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHH
Confidence 999965 4777777778777754
No 441
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.80 E-value=0.21 Score=48.27 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.3
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
....+.|+|++|+|||+|++.++.+.+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3368999999999999999999988654
No 442
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=90.79 E-value=0.14 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred EECCCchhHHHHHHHHHHhCCC
Q 004862 372 LLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 372 L~G~pGtGKt~la~~i~~~~~~ 393 (726)
|+|+||+||+++++.++....-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~ 22 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL 22 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS
T ss_pred CcCCCCCChHHHHHHHHHhcCc
Confidence 6899999999999999987643
No 443
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.78 E-value=0.31 Score=56.31 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=38.2
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.-|..+-..++-+ +|..++.. +.+....|+|+|.||+|||++++.++..+..
T Consensus 367 ~pP~~f~rpeV~~-iL~~~~~~---------r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVA-ELRRTYPP---------RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHH-HHHHHhcc---------ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4567777777766 66656543 2233368999999999999999999987753
No 444
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.75 E-value=0.31 Score=47.14 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.+|+.|+||+|||++|..++...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~ 27 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL 27 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC
Confidence 5899999999999999999877543
No 445
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.72 E-value=0.19 Score=51.45 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6799999999999999999987653
No 446
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=90.71 E-value=0.21 Score=48.56 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.6
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.-.+.|+|++|+|||+|++.++.+.+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 368999999999999999999987653
No 447
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.69 E-value=0.19 Score=50.27 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.+.|+|++|+|||+|++.++.+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999986543
No 448
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.68 E-value=0.2 Score=49.89 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6799999999999999999986543
No 449
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.67 E-value=0.15 Score=50.42 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=21.4
Q ss_pred EEEECCCchhHHHHHHHHHHhCCC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
|.|.|+||+|||++|+.++..+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 678999999999999999988764
No 450
>PRK08356 hypothetical protein; Provisional
Probab=90.65 E-value=0.31 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.7
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..++|+|+||+|||++++.+..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999964
No 451
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=90.64 E-value=0.18 Score=46.99 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=19.6
Q ss_pred eEEEECCCchhHHHHHHHHHHh
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~ 390 (726)
-++|+|++|+|||+|++++...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4899999999999999998753
No 452
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.62 E-value=0.17 Score=49.01 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
--+.|+|.||+|||++++.++..+.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999987763
No 453
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.56 E-value=0.17 Score=49.13 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
--|.+.||+|||||+|+..++...+.+
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf~~P~ 58 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGFVTPS 58 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcCcCcc
Confidence 568999999999999999999776543
No 454
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=90.52 E-value=0.2 Score=50.51 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.9
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..-.+.|+|++|+|||+|++.++.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 337899999999999999999986543
No 455
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.48 E-value=0.28 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEECCCchhHHHHHHHHHHhCC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
|.+.|.||+|||++++.++..++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999998874
No 456
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.43 E-value=0.22 Score=46.71 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=49.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc---EEeCCCCCCcccccceeeecCCCchhh--hccCceeecCCCeEEecccC-
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA---VYTSGKGSSAAGLTASVIRDGSSREFY--LEGGAMVLADGGVVCIDEFD- 441 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~---~~~~g~~~~~~gl~~~~~~~~~~~~~~--~~~G~l~la~~gvl~iDEi~- 441 (726)
-.+.|+|++|+|||+|++.++...+.. ++..|. ...+....-..|+.. .-+-+ ...+..++++||-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------~~i~~~~~lS~G~~~rv~lara-l~~~p~illlDEP~~ 99 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------VKIGYFEQLSGGEKMRLALAKL-LLENPNLLLLDEPTN 99 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------EEEEEEccCCHHHHHHHHHHHH-HhcCCCEEEEeCCcc
Confidence 689999999999999999999887542 222221 001111110011110 01111 23456799999965
Q ss_pred cCCHHHHHHHHHHHhc
Q 004862 442 KMRPEDRVAIHEAMEQ 457 (726)
Q Consensus 442 ~~~~~~~~~L~~~me~ 457 (726)
.+++..+..+.+.+.+
T Consensus 100 ~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 100 HLDLESIEALEEALKE 115 (144)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5788888888888864
No 457
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.42 E-value=0.22 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999987653
No 458
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=90.42 E-value=0.45 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.4
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..++.++|.||+|||+|+.++..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 36899999999999999999864
No 459
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.41 E-value=0.59 Score=49.17 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=20.6
Q ss_pred cceEEEECCCchhHHHHHHHHHHhC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.-.++|+||+|+|||+++..++..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999998876543
No 460
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.38 E-value=0.24 Score=48.58 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=22.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.-+.|+||||+|||+|++.+.+..|.
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 56899999999999999999877654
No 461
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.33 E-value=0.21 Score=49.91 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-++|+||+|+|||+|++.+.+..+
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhcCC
Confidence 5688899999999999999976544
No 462
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=90.31 E-value=0.22 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6799999999999999999986543
No 463
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=90.31 E-value=0.56 Score=50.06 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=27.3
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
....+|.|+|.||+|||++++.++..+...++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 34478999999999999999999988876655
No 464
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.29 E-value=0.23 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999986543
No 465
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=90.28 E-value=0.21 Score=47.93 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.3
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...++++|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 378999999999999999998754
No 466
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=90.27 E-value=0.24 Score=48.30 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=23.9
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
....+.|+|++|+|||+|++.++.+.+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3368999999999999999999987653
No 467
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=90.26 E-value=0.61 Score=49.06 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=24.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
..+++.|++|+|||++|+.++..++..
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 679999999999999999999887654
No 468
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=90.24 E-value=1.5 Score=33.58 Aligned_cols=40 Identities=25% Similarity=0.470 Sum_probs=32.2
Q ss_pred CCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCe
Q 004862 678 GNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERR 720 (726)
Q Consensus 678 ~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~ 720 (726)
+..+ +..+| ++.+|+|+.++.+.++.|.+.|+|...+++.
T Consensus 17 ~~~l~s~~~l---a~~~~vs~~tv~~~l~~L~~~g~i~~~~~~g 57 (60)
T smart00345 17 GDKLPSEREL---AAQLGVSRTTVREALSRLEAEGLVQRRPGSG 57 (60)
T ss_pred CCcCcCHHHH---HHHHCCCHHHHHHHHHHHHHCCCEEEecCCe
Confidence 3344 56666 8888999999999999999999998665544
No 469
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=90.23 E-value=1.3 Score=32.73 Aligned_cols=43 Identities=16% Similarity=0.420 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEE
Q 004862 665 KQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVE 714 (726)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~ 714 (726)
.+++..|.+ ...++..+| ++..|+|..++.+.|++|.+.|+|.
T Consensus 6 ~~Il~~l~~----~~~~t~~el---a~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 6 RKILNYLRE----NPRITQKEL---AEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHH----CTTS-HHHH---HHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH----cCCCCHHHH---HHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 445566664 345778887 8888999999999999999999984
No 470
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.23 E-value=0.22 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.6
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-.+.|+|++|+|||+|++.++.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999986653
No 471
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.23 E-value=0.23 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999986543
No 472
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.22 E-value=0.22 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
+.|+++|+||+|||+|+..+...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999887653
No 473
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.21 E-value=0.26 Score=47.62 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+|++|+|||+|++.++.+.+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 67899999999999999999987653
No 474
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=90.20 E-value=0.75 Score=37.77 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=36.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEE-e--cCCeEEE
Q 004862 676 PIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEY-K--RERRVIL 723 (726)
Q Consensus 676 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~-~--~~g~~~~ 723 (726)
..+.+|+-.+| ++.+|.++.++++.|..|.+.|+|+. + +.||+=|
T Consensus 19 ~~~~PVgSk~i---a~~l~~s~aTIRN~M~~Le~lGlve~~p~~s~GriPT 66 (78)
T PF03444_consen 19 ETGEPVGSKTI---AEELGRSPATIRNEMADLEELGLVESQPHPSGGRIPT 66 (78)
T ss_pred hcCCCcCHHHH---HHHHCCChHHHHHHHHHHHHCCCccCCCCCCCCCCcC
Confidence 34668888888 44579999999999999999999984 3 5677644
No 475
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.20 E-value=0.24 Score=47.95 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+|++|+|||+|++.++...+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 68999999999999999999887653
No 476
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=90.19 E-value=0.21 Score=40.33 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEec
Q 004862 667 AETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
+.+.|++ ...++..+| +++.|++++.++..|+.|.++|.|.+..
T Consensus 5 i~~~l~~----~~~~S~~eL---a~~~~~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRE----RGRVSLAEL---AREFGISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHH----S-SEEHHHH---HHHTT--HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHH----cCCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 4444443 356788888 8899999999999999999999998653
No 477
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.19 E-value=0.23 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6799999999999999999986543
No 478
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.17 E-value=0.77 Score=50.00 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=20.8
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...++|+||+|+|||+++..++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999988754
No 479
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=90.17 E-value=0.3 Score=49.18 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=24.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..+.|.||+|+|||++++.+++.++-..+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999987765544
No 480
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=90.15 E-value=0.23 Score=47.24 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=18.7
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
+.|+++|+||+|||+|++.+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999977653
No 481
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=90.14 E-value=0.24 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999987653
No 482
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=90.14 E-value=1.5 Score=35.30 Aligned_cols=48 Identities=13% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEec
Q 004862 664 IKQAETQIKRRIPIGN-QISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 664 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
.++++..+++. +. +++..+| ++++|++..++.+.|..|.+.|+|....
T Consensus 8 ~~~IL~~L~~~---g~~~~ta~eL---a~~lgl~~~~v~r~L~~L~~~G~V~~~~ 56 (68)
T smart00550 8 EEKILEFLENS---GDETSTALQL---AKNLGLPKKEVNRVLYSLEKKGKVCKQG 56 (68)
T ss_pred HHHHHHHHHHC---CCCCcCHHHH---HHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 35667777754 22 4777777 8889999999999999999999998753
No 483
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.12 E-value=0.24 Score=49.89 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.5
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-.+.|+|++|+|||+|++.++.+.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999986543
No 484
>PRK12338 hypothetical protein; Provisional
Probab=90.11 E-value=0.33 Score=51.47 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.-+++.|.||+|||++|+.++..++....
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 57899999999999999999998865433
No 485
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.09 E-value=0.25 Score=49.05 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++...+
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999986543
No 486
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.09 E-value=0.24 Score=50.54 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999987654
No 487
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.02 E-value=0.24 Score=49.70 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999987653
No 488
>PRK13808 adenylate kinase; Provisional
Probab=90.02 E-value=0.29 Score=52.32 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.7
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+|+|+||||+|||++++.++........
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i 29 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL 29 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 5899999999999999999887655443
No 489
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=90.01 E-value=0.24 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+|+++|++|+|||+|+.++...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999888643
No 490
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.99 E-value=0.26 Score=47.93 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+|++|+|||+|++.++...+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 67899999999999999999877653
No 491
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=89.98 E-value=0.24 Score=49.20 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.7
Q ss_pred CcceEEEECCCchhHHHHHHHHHHh
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
+...|+++|+||+|||+|++.+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3479999999999999999988753
No 492
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=89.96 E-value=0.25 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 6899999999999999999986643
No 493
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.95 E-value=0.6 Score=46.90 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.4
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
--++|+||.|+|||++++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3589999999999999999873
No 494
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.89 E-value=0.25 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6799999999999999999987654
No 495
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.88 E-value=0.27 Score=49.44 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+=|+|++|+|||+|+|.++.+...
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 67889999999999999999887654
No 496
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.87 E-value=0.25 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999986643
No 497
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=89.87 E-value=0.38 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=20.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
++|.|+|.|.+|||+|..++....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~ 24 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK 24 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 579999999999999999987654
No 498
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=89.87 E-value=0.25 Score=48.20 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=22.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||+|++.++...+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999998765
No 499
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=89.86 E-value=0.23 Score=46.87 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.9
Q ss_pred eEEEECCCchhHHHHHHHHHH
Q 004862 369 NVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~ 389 (726)
.|+++|+||+|||+|++.+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998864
No 500
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.79 E-value=0.26 Score=49.96 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5799999999999999999986653
Done!