Query 004862
Match_columns 726
No_of_seqs 366 out of 3696
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:08:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 2.8E-95 9E-100 835.4 34.4 583 34-644 3-593 (595)
2 3f8t_A Predicted ATPase involv 100.0 1.1E-70 3.7E-75 593.3 31.0 382 213-653 109-501 (506)
3 1ltl_A DNA replication initiat 100.0 3.4E-50 1.1E-54 418.1 28.8 266 29-330 8-279 (279)
4 2vl6_A SSO MCM N-TER, minichro 100.0 1.3E-47 4.5E-52 397.2 24.2 249 34-296 9-265 (268)
5 2r44_A Uncharacterized protein 99.9 2.9E-24 9.9E-29 230.2 26.8 284 322-641 15-300 (331)
6 1g8p_A Magnesium-chelatase 38 99.9 7.1E-24 2.4E-28 228.6 18.6 266 334-642 24-326 (350)
7 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 6.9E-23 2.3E-27 228.9 26.7 264 323-632 11-280 (500)
8 1ojl_A Transcriptional regulat 99.9 1.2E-23 4.3E-28 222.1 14.4 264 367-705 25-303 (304)
9 3pfi_A Holliday junction ATP-d 99.9 1.1E-21 3.6E-26 210.8 24.6 288 333-725 28-322 (338)
10 1hqc_A RUVB; extended AAA-ATPa 99.9 5.6E-20 1.9E-24 195.9 25.7 288 334-725 12-307 (324)
11 3k1j_A LON protease, ATP-depen 99.8 1.6E-20 5.5E-25 216.8 18.0 245 334-637 41-374 (604)
12 1ny5_A Transcriptional regulat 99.8 5.2E-21 1.8E-25 208.8 12.9 210 367-635 160-384 (387)
13 2bjv_A PSP operon transcriptio 99.8 5.1E-20 1.7E-24 190.7 13.9 236 334-632 6-251 (265)
14 3dzd_A Transcriptional regulat 99.8 5.1E-20 1.8E-24 199.4 12.0 195 367-618 152-361 (368)
15 1in4_A RUVB, holliday junction 99.8 2.3E-17 7.7E-22 176.7 23.3 297 324-725 11-319 (334)
16 1ofh_A ATP-dependent HSL prote 99.8 3.1E-18 1.1E-22 180.9 13.2 269 325-636 6-297 (310)
17 1um8_A ATP-dependent CLP prote 99.8 2.9E-18 1E-22 186.8 13.0 272 326-633 13-360 (376)
18 3hws_A ATP-dependent CLP prote 99.7 2.3E-18 7.7E-23 186.7 6.0 257 328-621 9-325 (363)
19 4fcw_A Chaperone protein CLPB; 99.7 6.1E-17 2.1E-21 171.3 14.5 246 325-617 8-277 (311)
20 3syl_A Protein CBBX; photosynt 99.6 7.3E-16 2.5E-20 162.9 13.7 242 325-632 22-280 (309)
21 3pxi_A Negative regulator of g 99.6 4E-16 1.4E-20 185.1 11.1 236 328-614 485-720 (758)
22 3pvs_A Replication-associated 99.6 1.6E-15 5.6E-20 167.9 13.3 212 333-636 25-242 (447)
23 3m6a_A ATP-dependent protease 99.6 6.9E-16 2.4E-20 175.4 10.1 241 329-636 76-339 (543)
24 1r6b_X CLPA protein; AAA+, N-t 99.6 1E-14 3.4E-19 173.3 17.2 237 325-616 449-713 (758)
25 3uk6_A RUVB-like 2; hexameric 99.6 4.9E-14 1.7E-18 152.7 18.2 140 433-638 191-330 (368)
26 4b4t_J 26S protease regulatory 99.5 1.2E-13 4.1E-18 148.5 17.3 189 368-639 183-390 (405)
27 3eie_A Vacuolar protein sortin 99.5 1.7E-14 5.8E-19 153.5 10.0 152 334-518 18-185 (322)
28 1qvr_A CLPB protein; coiled co 99.5 1.2E-14 4.2E-19 174.3 8.5 240 332-616 556-817 (854)
29 2v1u_A Cell division control p 99.5 5.3E-13 1.8E-17 145.0 20.7 301 334-716 19-351 (387)
30 1fnn_A CDC6P, cell division co 99.5 6.2E-13 2.1E-17 144.7 20.9 310 334-718 17-353 (389)
31 1lv7_A FTSH; alpha/beta domain 99.5 1.1E-13 3.8E-18 142.2 14.0 219 333-639 11-253 (257)
32 3n70_A Transport activator; si 99.5 8.9E-15 3E-19 136.8 5.2 118 368-516 25-143 (145)
33 3vfd_A Spastin; ATPase, microt 99.5 2E-13 6.8E-18 149.2 16.3 154 334-518 115-283 (389)
34 3h4m_A Proteasome-activating n 99.5 1.8E-13 6.2E-18 142.7 14.9 226 334-640 17-260 (285)
35 2qp9_X Vacuolar protein sortin 99.5 1.1E-13 3.8E-18 149.1 13.5 154 333-518 50-218 (355)
36 4b4t_I 26S protease regulatory 99.5 1.2E-13 4.3E-18 148.7 13.2 191 368-641 217-426 (437)
37 2chg_A Replication factor C sm 99.5 3E-13 1E-17 134.6 14.4 203 333-636 16-224 (226)
38 4b4t_K 26S protease regulatory 99.5 2.3E-13 7.8E-18 148.5 14.1 187 368-636 207-412 (428)
39 1xwi_A SKD1 protein; VPS4B, AA 99.5 3.5E-13 1.2E-17 143.2 15.1 156 333-518 11-180 (322)
40 4b4t_H 26S protease regulatory 99.5 3.8E-13 1.3E-17 146.3 15.5 189 368-639 244-451 (467)
41 3b9p_A CG5977-PA, isoform A; A 99.5 4.2E-13 1.4E-17 140.9 14.5 157 334-518 21-190 (297)
42 3d8b_A Fidgetin-like protein 1 99.5 9.1E-13 3.1E-17 142.1 17.4 238 334-641 84-337 (357)
43 1sxj_D Activator 1 41 kDa subu 99.5 3.6E-12 1.2E-16 136.9 21.6 210 332-636 35-261 (353)
44 4b4t_M 26S protease regulatory 99.4 5.1E-13 1.7E-17 145.8 14.7 190 368-640 216-424 (434)
45 4b4t_L 26S protease subunit RP 99.4 1.2E-12 4.3E-17 142.9 17.3 190 368-640 216-424 (437)
46 3co5_A Putative two-component 99.4 2.1E-14 7.3E-19 133.9 2.2 114 368-517 28-142 (143)
47 2qz4_A Paraplegin; AAA+, SPG7, 99.4 5.4E-13 1.9E-17 137.1 12.7 229 333-641 5-252 (262)
48 2c9o_A RUVB-like 1; hexameric 99.4 3.3E-12 1.1E-16 142.4 19.4 142 433-639 297-438 (456)
49 2zan_A Vacuolar protein sortin 99.4 8.8E-13 3E-17 146.3 14.4 156 333-518 133-302 (444)
50 2qby_B CDC6 homolog 3, cell di 99.4 7.3E-12 2.5E-16 136.1 18.8 290 334-716 20-339 (384)
51 1iqp_A RFCS; clamp loader, ext 99.4 4.5E-12 1.5E-16 134.4 16.4 204 332-636 23-232 (327)
52 1g41_A Heat shock protein HSLU 99.4 9.9E-12 3.4E-16 135.9 18.7 162 431-635 250-430 (444)
53 2dhr_A FTSH; AAA+ protein, hex 99.4 2.9E-12 9.9E-17 142.9 14.4 216 334-638 31-271 (499)
54 2chq_A Replication factor C sm 99.4 6.9E-12 2.4E-16 132.5 16.6 203 333-636 16-224 (319)
55 3u61_B DNA polymerase accessor 99.4 3E-11 1E-15 128.4 21.4 208 333-636 25-235 (324)
56 2ce7_A Cell division protein F 99.3 2.4E-12 8.2E-17 142.7 12.1 218 334-638 16-256 (476)
57 3bos_A Putative DNA replicatio 99.3 1E-11 3.6E-16 125.3 15.5 185 368-636 53-241 (242)
58 3hu3_A Transitional endoplasmi 99.3 3.3E-12 1.1E-16 142.7 12.9 154 334-520 204-375 (489)
59 2qby_A CDC6 homolog 1, cell di 99.3 3.4E-11 1.2E-15 130.4 20.5 297 334-716 20-348 (386)
60 1njg_A DNA polymerase III subu 99.3 2E-11 6.9E-16 122.8 15.3 210 333-635 22-248 (250)
61 3cf0_A Transitional endoplasmi 99.3 5.8E-12 2E-16 132.6 10.9 153 335-519 16-188 (301)
62 2r62_A Cell division protease 99.3 6.1E-13 2.1E-17 137.4 3.3 222 333-638 10-253 (268)
63 3pxg_A Negative regulator of g 99.3 3.2E-11 1.1E-15 134.7 15.9 221 334-614 180-406 (468)
64 1sxj_C Activator 1 40 kDa subu 99.3 4.6E-11 1.6E-15 127.9 14.8 210 333-636 24-237 (340)
65 1jr3_A DNA polymerase III subu 99.2 7.4E-10 2.5E-14 119.7 23.7 210 333-636 15-242 (373)
66 1sxj_B Activator 1 37 kDa subu 99.2 7.6E-10 2.6E-14 116.9 22.2 203 333-636 20-229 (323)
67 1l8q_A Chromosomal replication 99.2 3.8E-10 1.3E-14 119.9 18.9 185 368-636 38-238 (324)
68 2z4s_A Chromosomal replication 99.2 6.2E-11 2.1E-15 131.2 11.6 185 368-638 131-332 (440)
69 1ixz_A ATP-dependent metallopr 99.2 3E-11 1E-15 123.7 8.4 181 369-635 51-253 (254)
70 4akg_A Glutathione S-transfera 99.2 2E-10 6.7E-15 148.9 16.6 203 368-614 1268-1485(2695)
71 1iy2_A ATP-dependent metallopr 99.1 4.4E-11 1.5E-15 124.3 7.7 184 369-635 75-277 (278)
72 1d2n_A N-ethylmaleimide-sensit 99.1 3.1E-11 1.1E-15 124.9 5.4 172 368-616 65-247 (272)
73 3vkg_A Dynein heavy chain, cyt 99.1 1.5E-09 5.1E-14 141.4 21.3 201 368-613 1305-1522(3245)
74 3t15_A Ribulose bisphosphate c 99.1 1.1E-10 3.6E-15 122.3 8.5 127 366-514 35-184 (293)
75 1sxj_E Activator 1 40 kDa subu 99.1 5.5E-09 1.9E-13 112.1 20.5 195 334-618 14-244 (354)
76 3cf2_A TER ATPase, transitiona 99.0 8.2E-11 2.8E-15 137.4 4.7 151 335-517 478-648 (806)
77 1r6b_X CLPA protein; AAA+, N-t 99.0 1.8E-09 6.3E-14 128.0 16.2 143 333-518 185-350 (758)
78 3pxi_A Negative regulator of g 99.0 2E-09 6.8E-14 127.6 16.0 220 333-612 179-404 (758)
79 3cf2_A TER ATPase, transitiona 99.0 6.6E-10 2.3E-14 129.8 8.9 164 334-537 204-387 (806)
80 1sxj_A Activator 1 95 kDa subu 99.0 7.8E-09 2.7E-13 116.9 17.3 220 334-638 39-274 (516)
81 1w5s_A Origin recognition comp 98.9 1.1E-08 3.6E-13 112.1 16.5 304 333-717 21-372 (412)
82 2x8a_A Nuclear valosin-contain 98.9 3E-09 1E-13 110.1 10.9 149 334-518 10-179 (274)
83 4akg_A Glutathione S-transfera 98.9 2.8E-08 9.5E-13 129.1 20.4 202 368-637 646-856 (2695)
84 2p65_A Hypothetical protein PF 98.9 1.3E-09 4.3E-14 105.1 5.5 150 326-510 14-180 (187)
85 1jbk_A CLPB protein; beta barr 98.9 2.2E-09 7.4E-14 103.7 6.9 159 324-518 12-186 (195)
86 1qvr_A CLPB protein; coiled co 98.8 1.7E-08 5.8E-13 121.0 14.8 215 326-584 162-393 (854)
87 3te6_A Regulatory protein SIR3 98.8 1.6E-08 5.5E-13 106.1 12.0 212 368-619 46-287 (318)
88 1a5t_A Delta prime, HOLB; zinc 98.6 5.9E-07 2E-11 95.6 16.0 139 339-516 7-166 (334)
89 1ypw_A Transitional endoplasmi 98.6 4.2E-09 1.4E-13 124.9 -1.4 154 334-519 477-650 (806)
90 2gno_A DNA polymerase III, gam 98.5 2.7E-07 9.3E-12 96.7 11.6 136 338-521 1-143 (305)
91 1ypw_A Transitional endoplasmi 98.4 2.8E-07 9.6E-12 109.3 6.8 152 334-518 204-373 (806)
92 3vkg_A Dynein heavy chain, cyt 98.3 1.1E-05 3.7E-10 105.9 18.3 186 368-619 605-801 (3245)
93 2qen_A Walker-type ATPase; unk 98.2 3.8E-05 1.3E-09 81.4 19.5 49 334-397 12-60 (350)
94 2kjq_A DNAA-related protein; s 98.2 1.3E-06 4.3E-11 81.5 6.4 100 368-509 37-140 (149)
95 1tue_A Replication protein E1; 98.1 3.2E-06 1.1E-10 82.0 7.2 114 368-510 59-173 (212)
96 1u0j_A DNA replication protein 97.9 6E-05 2.1E-09 76.5 12.6 95 368-483 105-199 (267)
97 3ec2_A DNA replication protein 97.9 2.1E-06 7.1E-11 82.5 1.4 101 368-485 39-144 (180)
98 2qgz_A Helicase loader, putati 97.7 2.9E-06 1E-10 89.0 -2.3 25 368-392 153-177 (308)
99 2w58_A DNAI, primosome compone 97.6 9.8E-06 3.3E-10 79.2 -0.2 25 368-392 55-79 (202)
100 2fna_A Conserved hypothetical 97.5 0.0065 2.2E-07 64.0 20.8 36 682-717 304-342 (357)
101 1jr3_D DNA polymerase III, del 97.5 0.00075 2.6E-08 71.6 12.8 176 368-636 19-207 (343)
102 2r2a_A Uncharacterized protein 97.2 0.0004 1.4E-08 67.6 6.6 61 432-517 88-153 (199)
103 2orw_A Thymidine kinase; TMTK, 96.9 0.0012 4.1E-08 63.4 6.1 64 432-518 77-140 (184)
104 2r8r_A Sensor protein; KDPD, P 96.0 0.021 7.2E-07 56.2 9.3 26 365-390 4-29 (228)
105 3upu_A ATP-dependent DNA helic 95.8 0.0069 2.4E-07 66.9 5.1 26 431-456 128-153 (459)
106 1w36_D RECD, exodeoxyribonucle 95.3 0.033 1.1E-06 63.7 8.6 36 339-389 151-186 (608)
107 1qhx_A CPT, protein (chloramph 95.0 0.014 4.7E-07 55.1 3.8 28 368-395 4-31 (178)
108 2heo_A Z-DNA binding protein 1 95.0 0.083 2.8E-06 41.3 7.6 51 665-721 13-63 (67)
109 1kag_A SKI, shikimate kinase I 94.8 0.017 5.7E-07 54.2 3.7 27 368-394 5-31 (173)
110 3e1s_A Exodeoxyribonuclease V, 94.8 0.025 8.7E-07 64.1 5.9 23 368-390 205-227 (574)
111 3trf_A Shikimate kinase, SK; a 94.6 0.018 6E-07 54.7 3.2 29 368-396 6-34 (185)
112 1via_A Shikimate kinase; struc 94.4 0.02 6.8E-07 54.0 3.0 27 369-395 6-32 (175)
113 3vaa_A Shikimate kinase, SK; s 94.2 0.025 8.4E-07 54.6 3.5 28 368-395 26-53 (199)
114 1y63_A LMAJ004144AAA protein; 94.2 0.031 1.1E-06 53.2 4.2 26 368-393 11-37 (184)
115 2jt1_A PEFI protein; solution 94.2 0.046 1.6E-06 44.0 4.4 54 664-720 6-61 (77)
116 1zuh_A Shikimate kinase; alpha 94.2 0.024 8.3E-07 52.9 3.3 29 368-396 8-36 (168)
117 2p5t_B PEZT; postsegregational 94.2 0.048 1.7E-06 54.8 5.7 26 368-393 33-58 (253)
118 3kb2_A SPBC2 prophage-derived 94.1 0.024 8.2E-07 52.8 3.0 26 369-394 3-28 (173)
119 2lnb_A Z-DNA-binding protein 1 94.1 0.2 7E-06 39.5 7.6 56 660-721 17-72 (80)
120 1ye8_A Protein THEP1, hypothet 94.1 0.025 8.6E-07 53.7 3.1 24 369-392 2-25 (178)
121 3iij_A Coilin-interacting nucl 94.0 0.03 1E-06 52.9 3.5 29 368-396 12-40 (180)
122 1htw_A HI0065; nucleotide-bind 94.0 0.034 1.2E-06 51.7 3.7 25 368-392 34-58 (158)
123 3jvv_A Twitching mobility prot 93.9 0.05 1.7E-06 57.7 5.4 24 369-392 125-148 (356)
124 2eyu_A Twitching motility prot 93.9 0.071 2.4E-06 54.0 6.3 25 368-392 26-50 (261)
125 1ly1_A Polynucleotide kinase; 93.9 0.026 8.9E-07 53.0 2.9 22 368-389 3-24 (181)
126 2b8t_A Thymidine kinase; deoxy 93.8 0.1 3.5E-06 51.4 7.0 21 368-388 13-33 (223)
127 3dl0_A Adenylate kinase; phosp 93.8 0.037 1.3E-06 54.0 3.9 28 369-396 2-29 (216)
128 1gvn_B Zeta; postsegregational 93.8 0.082 2.8E-06 54.3 6.6 25 368-392 34-58 (287)
129 3lw7_A Adenylate kinase relate 93.8 0.036 1.2E-06 51.5 3.6 28 368-396 2-29 (179)
130 1zp6_A Hypothetical protein AT 93.7 0.029 9.9E-07 53.4 2.9 23 368-390 10-32 (191)
131 2bdt_A BH3686; alpha-beta prot 93.7 0.032 1.1E-06 53.1 3.1 28 369-396 4-31 (189)
132 3tr0_A Guanylate kinase, GMP k 93.7 0.045 1.5E-06 52.7 4.2 25 368-392 8-32 (205)
133 2iyv_A Shikimate kinase, SK; t 93.6 0.034 1.2E-06 52.7 3.0 28 369-396 4-31 (184)
134 2cdn_A Adenylate kinase; phosp 93.6 0.044 1.5E-06 52.8 3.9 28 368-395 21-48 (201)
135 1kgd_A CASK, peripheral plasma 93.5 0.038 1.3E-06 52.4 3.2 26 368-393 6-31 (180)
136 2vli_A Antibiotic resistance p 93.4 0.039 1.3E-06 52.1 3.2 29 368-396 6-34 (183)
137 1knq_A Gluconate kinase; ALFA/ 93.4 0.049 1.7E-06 51.1 3.7 25 368-392 9-33 (175)
138 1e6c_A Shikimate kinase; phosp 93.3 0.04 1.4E-06 51.4 3.1 28 369-396 4-31 (173)
139 3fb4_A Adenylate kinase; psych 93.3 0.043 1.5E-06 53.5 3.2 28 369-396 2-29 (216)
140 2ze6_A Isopentenyl transferase 93.2 0.041 1.4E-06 55.4 3.1 28 369-396 3-30 (253)
141 3t61_A Gluconokinase; PSI-biol 93.2 0.041 1.4E-06 53.0 3.0 26 368-393 19-44 (202)
142 3tqc_A Pantothenate kinase; bi 93.2 0.047 1.6E-06 57.0 3.5 80 304-392 32-117 (321)
143 1aky_A Adenylate kinase; ATP:A 93.1 0.049 1.7E-06 53.3 3.5 28 368-395 5-32 (220)
144 2rhm_A Putative kinase; P-loop 93.1 0.048 1.6E-06 51.9 3.3 26 368-393 6-31 (193)
145 3cm0_A Adenylate kinase; ATP-b 93.1 0.046 1.6E-06 51.7 3.2 26 368-393 5-30 (186)
146 1qbj_A Protein (double-strande 93.1 0.41 1.4E-05 38.9 8.3 49 664-716 12-60 (81)
147 3sr0_A Adenylate kinase; phosp 93.1 0.038 1.3E-06 53.8 2.5 27 369-395 2-28 (206)
148 2qor_A Guanylate kinase; phosp 93.0 0.048 1.6E-06 52.8 3.2 26 368-393 13-38 (204)
149 2pt5_A Shikimate kinase, SK; a 93.0 0.05 1.7E-06 50.5 3.2 27 369-395 2-28 (168)
150 4eun_A Thermoresistant glucoki 93.0 0.053 1.8E-06 52.3 3.5 25 368-392 30-54 (200)
151 2j41_A Guanylate kinase; GMP, 92.9 0.055 1.9E-06 52.1 3.4 24 368-391 7-30 (207)
152 2c95_A Adenylate kinase 1; tra 92.9 0.055 1.9E-06 51.6 3.3 29 368-396 10-38 (196)
153 1tev_A UMP-CMP kinase; ploop, 92.8 0.054 1.8E-06 51.5 3.1 26 368-393 4-29 (196)
154 1kht_A Adenylate kinase; phosp 92.7 0.05 1.7E-06 51.6 2.8 25 368-392 4-28 (192)
155 1nks_A Adenylate kinase; therm 92.7 0.047 1.6E-06 51.8 2.5 24 369-392 3-26 (194)
156 3nwj_A ATSK2; P loop, shikimat 92.7 0.066 2.2E-06 53.8 3.6 29 368-396 49-77 (250)
157 1xn7_A Hypothetical protein YH 92.6 0.13 4.3E-06 41.6 4.5 46 664-716 4-49 (78)
158 1ex7_A Guanylate kinase; subst 92.6 0.082 2.8E-06 50.5 4.0 27 369-395 3-29 (186)
159 1cke_A CK, MSSA, protein (cyti 92.5 0.049 1.7E-06 53.4 2.5 26 368-393 6-31 (227)
160 3tau_A Guanylate kinase, GMP k 92.5 0.058 2E-06 52.4 2.9 26 368-393 9-34 (208)
161 1zd8_A GTP:AMP phosphotransfer 92.5 0.068 2.3E-06 52.6 3.5 28 368-395 8-35 (227)
162 3uie_A Adenylyl-sulfate kinase 92.4 0.07 2.4E-06 51.4 3.4 25 368-392 26-50 (200)
163 2bwj_A Adenylate kinase 5; pho 92.4 0.058 2E-06 51.6 2.8 28 368-395 13-40 (199)
164 1qf9_A UMP/CMP kinase, protein 92.4 0.059 2E-06 51.1 2.8 28 368-395 7-34 (194)
165 2jaq_A Deoxyguanosine kinase; 92.3 0.068 2.3E-06 51.2 3.2 25 369-393 2-26 (205)
166 3umf_A Adenylate kinase; rossm 92.2 0.05 1.7E-06 53.4 2.1 27 368-394 30-56 (217)
167 3tlx_A Adenylate kinase 2; str 92.2 0.062 2.1E-06 53.7 2.8 29 368-396 30-58 (243)
168 2plr_A DTMP kinase, probable t 92.2 0.059 2E-06 52.1 2.5 25 368-392 5-29 (213)
169 1ak2_A Adenylate kinase isoenz 92.1 0.081 2.8E-06 52.3 3.6 28 368-395 17-44 (233)
170 3a00_A Guanylate kinase, GMP k 92.1 0.068 2.3E-06 50.9 2.9 26 369-394 3-28 (186)
171 1e4v_A Adenylate kinase; trans 92.1 0.068 2.3E-06 52.1 3.0 27 369-395 2-28 (214)
172 3cmw_A Protein RECA, recombina 92.0 0.13 4.5E-06 64.7 5.9 34 368-401 1083-1120(1706)
173 1ukz_A Uridylate kinase; trans 92.0 0.093 3.2E-06 50.5 3.7 28 368-395 16-43 (203)
174 3be4_A Adenylate kinase; malar 91.9 0.076 2.6E-06 51.9 3.0 29 368-396 6-34 (217)
175 1znw_A Guanylate kinase, GMP k 91.9 0.092 3.1E-06 50.9 3.6 25 368-392 21-45 (207)
176 1upt_A ARL1, ADP-ribosylation 91.8 0.095 3.3E-06 48.3 3.5 25 365-389 5-29 (171)
177 3clv_A RAB5 protein, putative; 91.8 0.1 3.5E-06 49.5 3.8 26 365-390 5-30 (208)
178 4a74_A DNA repair and recombin 91.7 0.1 3.4E-06 51.1 3.7 24 368-391 26-49 (231)
179 1lvg_A Guanylate kinase, GMP k 91.7 0.073 2.5E-06 51.3 2.5 25 368-392 5-29 (198)
180 1zak_A Adenylate kinase; ATP:A 91.6 0.07 2.4E-06 52.3 2.4 26 368-393 6-31 (222)
181 2bbw_A Adenylate kinase 4, AK4 91.6 0.078 2.7E-06 52.9 2.7 24 368-391 28-51 (246)
182 2gza_A Type IV secretion syste 91.5 0.093 3.2E-06 55.8 3.4 26 368-393 176-201 (361)
183 2xb4_A Adenylate kinase; ATP-b 91.5 0.095 3.2E-06 51.5 3.2 26 369-394 2-27 (223)
184 3ney_A 55 kDa erythrocyte memb 91.4 0.1 3.5E-06 50.3 3.2 26 368-393 20-45 (197)
185 2if2_A Dephospho-COA kinase; a 91.4 0.11 3.8E-06 50.0 3.5 23 369-392 3-25 (204)
186 3r20_A Cytidylate kinase; stru 91.3 0.085 2.9E-06 52.3 2.6 28 368-395 10-37 (233)
187 4gp7_A Metallophosphoesterase; 91.3 0.075 2.6E-06 49.9 2.2 20 368-387 10-29 (171)
188 2v54_A DTMP kinase, thymidylat 91.3 0.11 3.9E-06 49.7 3.5 24 368-391 5-28 (204)
189 1s96_A Guanylate kinase, GMP k 91.2 0.1 3.6E-06 51.2 3.2 26 368-393 17-42 (219)
190 3c8u_A Fructokinase; YP_612366 91.2 0.098 3.3E-06 50.7 2.9 25 368-392 23-47 (208)
191 2yvu_A Probable adenylyl-sulfa 91.2 0.13 4.3E-06 48.8 3.6 25 368-392 14-38 (186)
192 1z6g_A Guanylate kinase; struc 91.2 0.11 3.9E-06 50.8 3.4 25 368-392 24-48 (218)
193 2vhj_A Ntpase P4, P4; non- hyd 91.2 0.095 3.2E-06 54.4 2.8 23 368-390 124-146 (331)
194 2v9p_A Replication protein E1; 91.1 0.13 4.4E-06 53.2 3.8 24 368-391 127-150 (305)
195 3a4m_A L-seryl-tRNA(SEC) kinas 91.1 0.097 3.3E-06 52.8 2.9 23 368-390 5-27 (260)
196 2oap_1 GSPE-2, type II secreti 90.9 0.16 5.4E-06 56.6 4.6 27 368-394 261-287 (511)
197 4e22_A Cytidylate kinase; P-lo 90.9 0.13 4.4E-06 51.6 3.5 29 368-396 28-56 (252)
198 1svm_A Large T antigen; AAA+ f 90.9 0.13 4.4E-06 55.0 3.6 26 368-393 170-195 (377)
199 3b85_A Phosphate starvation-in 90.9 0.1 3.5E-06 50.8 2.7 23 368-390 23-45 (208)
200 3vkw_A Replicase large subunit 90.8 0.083 2.8E-06 57.3 2.1 87 368-455 162-258 (446)
201 2pbr_A DTMP kinase, thymidylat 90.8 0.11 3.7E-06 49.3 2.8 23 369-391 2-24 (195)
202 2qt1_A Nicotinamide riboside k 90.7 0.13 4.3E-06 49.7 3.2 25 368-392 22-46 (207)
203 3lxx_A GTPase IMAP family memb 90.6 0.29 1E-05 48.3 5.9 26 366-391 28-53 (239)
204 2wwf_A Thymidilate kinase, put 90.5 0.11 3.7E-06 50.2 2.5 24 368-391 11-34 (212)
205 3crm_A TRNA delta(2)-isopenten 90.5 0.15 5E-06 53.1 3.6 29 368-396 6-34 (323)
206 2z0h_A DTMP kinase, thymidylat 90.5 0.13 4.5E-06 48.9 3.0 22 370-391 3-24 (197)
207 1jjv_A Dephospho-COA kinase; P 90.5 0.11 3.9E-06 50.0 2.6 22 368-389 3-24 (206)
208 2ga8_A Hypothetical 39.9 kDa p 90.4 0.22 7.6E-06 52.3 4.8 27 368-394 25-51 (359)
209 2ehv_A Hypothetical protein PH 90.4 0.12 4.1E-06 51.2 2.7 21 368-388 31-51 (251)
210 1nn5_A Similar to deoxythymidy 90.3 0.14 4.7E-06 49.6 3.0 24 368-391 10-33 (215)
211 1uf9_A TT1252 protein; P-loop, 90.3 0.17 5.9E-06 48.3 3.7 23 368-390 9-31 (203)
212 2onk_A Molybdate/tungstate ABC 90.3 0.13 4.5E-06 51.2 2.9 26 368-393 25-50 (240)
213 3tif_A Uncharacterized ABC tra 90.2 0.13 4.4E-06 51.1 2.8 25 368-392 32-56 (235)
214 3ake_A Cytidylate kinase; CMP 90.2 0.14 4.9E-06 49.1 3.0 28 369-396 4-31 (208)
215 3sop_A Neuronal-specific septi 90.1 0.12 4.2E-06 52.4 2.6 26 368-393 3-28 (270)
216 1qgp_A Protein (double strande 90.1 1.1 3.8E-05 35.8 7.8 49 665-717 17-65 (77)
217 2pez_A Bifunctional 3'-phospho 90.1 0.17 5.7E-06 47.6 3.4 24 368-391 6-29 (179)
218 1kao_A RAP2A; GTP-binding prot 90.1 0.15 5.2E-06 46.4 3.0 22 368-389 4-25 (167)
219 1z2a_A RAS-related protein RAB 90.0 0.15 5.2E-06 46.6 3.0 23 367-389 5-27 (168)
220 3t1o_A Gliding protein MGLA; G 90.0 0.16 5.6E-06 47.9 3.2 26 367-392 14-39 (198)
221 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.16 5.3E-06 49.6 3.1 23 368-390 24-46 (235)
222 3asz_A Uridine kinase; cytidin 89.9 0.15 5.2E-06 49.2 3.0 25 368-392 7-31 (211)
223 2pcj_A ABC transporter, lipopr 89.9 0.12 4.1E-06 50.9 2.3 25 368-392 31-55 (224)
224 1ltq_A Polynucleotide kinase; 89.9 0.2 6.8E-06 51.4 4.0 24 368-391 3-26 (301)
225 2erx_A GTP-binding protein DI- 89.9 0.15 5.1E-06 46.8 2.8 22 368-389 4-25 (172)
226 1nrj_B SR-beta, signal recogni 89.8 0.18 6E-06 48.9 3.3 26 366-391 11-36 (218)
227 3q85_A GTP-binding protein REM 89.7 0.15 5.1E-06 46.9 2.7 22 368-389 3-24 (169)
228 2f9l_A RAB11B, member RAS onco 89.7 0.16 5.5E-06 48.5 3.0 24 368-391 6-29 (199)
229 3a8t_A Adenylate isopentenyltr 89.7 0.28 9.5E-06 51.3 4.9 29 368-396 41-69 (339)
230 3kta_A Chromosome segregation 89.7 0.16 5.5E-06 47.8 2.9 24 369-392 28-51 (182)
231 3neu_A LIN1836 protein; struct 89.7 0.92 3.1E-05 40.0 7.7 43 678-723 34-77 (125)
232 1ky3_A GTP-binding protein YPT 89.6 0.17 5.9E-06 47.0 3.0 25 366-390 7-31 (182)
233 4b3f_X DNA-binding protein smu 89.6 0.23 7.8E-06 57.2 4.6 32 340-385 192-223 (646)
234 1z0j_A RAB-22, RAS-related pro 89.6 0.18 6.1E-06 46.3 3.0 23 368-390 7-29 (170)
235 2fz4_A DNA repair protein RAD2 89.5 0.52 1.8E-05 46.6 6.7 24 369-392 110-133 (237)
236 1r7j_A Conserved hypothetical 89.5 0.41 1.4E-05 40.2 4.9 42 681-725 21-62 (95)
237 1ek0_A Protein (GTP-binding pr 89.5 0.17 5.8E-06 46.3 2.9 23 368-390 4-26 (170)
238 1n0w_A DNA repair protein RAD5 89.5 0.16 5.5E-06 50.0 2.9 23 368-390 25-47 (243)
239 3lnc_A Guanylate kinase, GMP k 89.4 0.12 4E-06 51.0 1.8 26 368-393 28-54 (231)
240 1uj2_A Uridine-cytidine kinase 89.4 0.2 6.9E-06 50.1 3.6 26 368-393 23-48 (252)
241 2nzj_A GTP-binding protein REM 89.4 0.18 6E-06 46.6 2.9 22 368-389 5-26 (175)
242 2i3b_A HCR-ntpase, human cance 89.4 0.18 6.1E-06 48.3 3.0 23 369-391 3-25 (189)
243 2b0l_A GTP-sensing transcripti 89.4 0.81 2.8E-05 38.9 6.8 53 668-723 30-86 (102)
244 1u8z_A RAS-related protein RAL 89.4 0.18 6.2E-06 46.0 3.0 23 368-390 5-27 (168)
245 2pt7_A CAG-ALFA; ATPase, prote 89.4 0.2 6.8E-06 52.5 3.6 26 368-393 172-197 (330)
246 2cvh_A DNA repair and recombin 89.4 0.2 6.9E-06 48.5 3.4 22 368-389 21-42 (220)
247 1m7g_A Adenylylsulfate kinase; 89.3 0.21 7.2E-06 48.4 3.5 25 368-392 26-50 (211)
248 1z08_A RAS-related protein RAB 89.3 0.19 6.3E-06 46.2 3.0 24 367-390 6-29 (170)
249 1m7b_A RND3/RHOE small GTP-bin 89.3 0.17 5.7E-06 47.6 2.7 24 367-390 7-30 (184)
250 2ce2_X GTPase HRAS; signaling 89.3 0.17 5.8E-06 46.0 2.7 23 368-390 4-26 (166)
251 1b0u_A Histidine permease; ABC 89.3 0.17 5.7E-06 51.2 2.8 26 368-393 33-58 (262)
252 2ged_A SR-beta, signal recogni 89.3 0.21 7.1E-06 47.2 3.4 25 367-391 48-72 (193)
253 1wms_A RAB-9, RAB9, RAS-relate 89.2 0.19 6.6E-06 46.5 3.0 24 367-390 7-30 (177)
254 1sgw_A Putative ABC transporte 89.2 0.16 5.4E-06 49.7 2.5 26 368-393 36-61 (214)
255 1mv5_A LMRA, multidrug resista 89.2 0.17 5.8E-06 50.5 2.8 25 368-392 29-53 (243)
256 1c1y_A RAS-related protein RAP 89.2 0.19 6.5E-06 45.9 3.0 22 368-389 4-25 (167)
257 1r8s_A ADP-ribosylation factor 89.2 0.2 6.7E-06 45.8 3.0 23 368-390 1-23 (164)
258 2zej_A Dardarin, leucine-rich 89.2 0.18 6.1E-06 47.5 2.8 22 368-389 3-24 (184)
259 3oes_A GTPase rhebl1; small GT 89.2 0.17 5.8E-06 48.4 2.7 30 361-390 18-47 (201)
260 2gj8_A MNME, tRNA modification 89.1 0.17 5.9E-06 47.2 2.6 23 368-390 5-27 (172)
261 1g16_A RAS-related protein SEC 89.1 0.18 6.2E-06 46.2 2.7 22 368-389 4-25 (170)
262 2jeo_A Uridine-cytidine kinase 89.1 0.2 7E-06 49.8 3.3 25 368-392 26-50 (245)
263 2dyk_A GTP-binding protein; GT 89.1 0.2 6.9E-06 45.4 3.0 23 368-390 2-24 (161)
264 2lkc_A Translation initiation 89.0 0.23 7.8E-06 46.0 3.4 24 366-389 7-30 (178)
265 2qi9_C Vitamin B12 import ATP- 89.0 0.17 5.8E-06 50.8 2.6 25 368-392 27-51 (249)
266 1g6h_A High-affinity branched- 89.0 0.17 5.7E-06 51.1 2.5 25 368-392 34-58 (257)
267 3q72_A GTP-binding protein RAD 89.0 0.18 6.2E-06 46.1 2.6 21 368-388 3-23 (166)
268 3lxw_A GTPase IMAP family memb 89.0 0.49 1.7E-05 47.1 6.0 26 366-391 20-45 (247)
269 2cbz_A Multidrug resistance-as 89.0 0.14 4.8E-06 51.0 1.9 26 368-393 32-57 (237)
270 1zd9_A ADP-ribosylation factor 89.0 0.19 6.4E-06 47.5 2.8 27 363-389 18-44 (188)
271 2wji_A Ferrous iron transport 88.8 0.2 6.9E-06 46.2 2.8 22 368-389 4-25 (165)
272 2hxs_A RAB-26, RAS-related pro 88.8 0.22 7.4E-06 46.2 3.1 23 367-389 6-28 (178)
273 2pze_A Cystic fibrosis transme 88.8 0.18 6.1E-06 49.8 2.6 26 368-393 35-60 (229)
274 1r2q_A RAS-related protein RAB 88.8 0.21 7.3E-06 45.6 3.0 23 367-389 6-28 (170)
275 2ff7_A Alpha-hemolysin translo 88.8 0.18 6.1E-06 50.5 2.5 25 368-392 36-60 (247)
276 3bc1_A RAS-related protein RAB 88.7 0.21 7.2E-06 46.9 3.0 23 367-389 11-33 (195)
277 2qmh_A HPR kinase/phosphorylas 88.7 0.22 7.5E-06 47.9 3.0 25 368-392 35-59 (205)
278 1vht_A Dephospho-COA kinase; s 88.7 0.29 9.9E-06 47.6 4.0 22 368-389 5-26 (218)
279 4ham_A LMO2241 protein; struct 88.7 1.1 3.9E-05 39.9 7.7 56 664-722 16-77 (134)
280 1ji0_A ABC transporter; ATP bi 88.7 0.18 6.2E-06 50.2 2.5 25 368-392 33-57 (240)
281 3gfo_A Cobalt import ATP-bindi 88.7 0.18 6.3E-06 51.3 2.6 26 368-393 35-60 (275)
282 1oix_A RAS-related protein RAB 88.6 0.2 6.9E-06 47.6 2.7 25 368-392 30-54 (191)
283 2olj_A Amino acid ABC transpor 88.6 0.2 6.9E-06 50.6 2.8 26 368-393 51-76 (263)
284 3ihw_A Centg3; RAS, centaurin, 88.5 0.24 8.3E-06 46.7 3.2 25 365-389 18-42 (184)
285 2ixe_A Antigen peptide transpo 88.5 0.2 6.8E-06 50.9 2.8 25 368-392 46-70 (271)
286 2grj_A Dephospho-COA kinase; T 88.5 0.23 7.9E-06 47.6 3.0 27 369-395 14-40 (192)
287 1pzn_A RAD51, DNA repair and r 88.5 0.3 1E-05 51.6 4.2 24 368-391 132-155 (349)
288 1z0f_A RAB14, member RAS oncog 88.5 0.23 7.8E-06 46.0 3.0 24 367-390 15-38 (179)
289 1vpl_A ABC transporter, ATP-bi 88.4 0.21 7.2E-06 50.3 2.8 25 368-392 42-66 (256)
290 4g1u_C Hemin import ATP-bindin 88.4 0.18 6.3E-06 51.0 2.4 25 368-392 38-62 (266)
291 2bov_A RAla, RAS-related prote 88.4 0.24 8.2E-06 47.2 3.2 25 366-390 13-37 (206)
292 2gf0_A GTP-binding protein DI- 88.4 0.24 8.1E-06 47.0 3.1 24 366-389 7-30 (199)
293 2iwr_A Centaurin gamma 1; ANK 88.4 0.23 7.9E-06 46.1 2.9 23 368-390 8-30 (178)
294 3d31_A Sulfate/molybdate ABC t 88.3 0.27 9.4E-06 51.8 3.7 26 368-393 27-52 (348)
295 2yz2_A Putative ABC transporte 88.3 0.21 7.3E-06 50.5 2.8 26 368-393 34-59 (266)
296 2ihy_A ABC transporter, ATP-bi 88.3 0.2 6.9E-06 51.1 2.6 26 368-393 48-73 (279)
297 3tw8_B RAS-related protein RAB 88.3 0.22 7.4E-06 46.2 2.7 22 367-388 9-30 (181)
298 3cph_A RAS-related protein SEC 88.3 0.24 8.3E-06 47.5 3.1 25 365-389 18-42 (213)
299 1ksh_A ARF-like protein 2; sma 88.2 0.24 8E-06 46.5 2.9 24 366-389 17-40 (186)
300 2k02_A Ferrous iron transport 88.2 0.3 1E-05 40.2 3.0 46 665-717 5-50 (87)
301 1gtv_A TMK, thymidylate kinase 88.2 0.15 5E-06 49.3 1.4 24 369-392 2-25 (214)
302 2nq2_C Hypothetical ABC transp 88.2 0.21 7.1E-06 50.2 2.6 26 368-393 32-57 (253)
303 2oil_A CATX-8, RAS-related pro 88.1 0.25 8.4E-06 46.7 3.0 24 367-390 25-48 (193)
304 2h92_A Cytidylate kinase; ross 88.1 0.32 1.1E-05 47.2 3.9 29 368-396 4-32 (219)
305 4dsu_A GTPase KRAS, isoform 2B 88.1 0.24 8.3E-06 46.3 2.9 23 368-390 5-27 (189)
306 2ghi_A Transport protein; mult 88.0 0.22 7.5E-06 50.3 2.6 25 368-392 47-71 (260)
307 1z06_A RAS-related protein RAB 88.0 0.26 8.8E-06 46.4 3.0 24 366-389 19-42 (189)
308 1z47_A CYSA, putative ABC-tran 87.9 0.23 7.9E-06 52.4 2.8 26 368-393 42-67 (355)
309 2wjg_A FEOB, ferrous iron tran 87.9 0.29 9.8E-06 45.9 3.3 22 368-389 8-29 (188)
310 3kkq_A RAS-related protein M-R 87.9 0.26 8.9E-06 46.0 3.0 23 367-389 18-40 (183)
311 2efe_B Small GTP-binding prote 87.9 0.26 9E-06 45.7 3.0 23 367-389 12-34 (181)
312 2g6b_A RAS-related protein RAB 87.9 0.26 9E-06 45.7 3.0 25 366-390 9-33 (180)
313 2vp4_A Deoxynucleoside kinase; 87.9 0.31 1.1E-05 48.0 3.6 23 368-390 21-43 (230)
314 1lw7_A Transcriptional regulat 87.8 0.29 9.8E-06 52.0 3.6 27 368-394 171-197 (365)
315 2fn4_A P23, RAS-related protei 87.8 0.25 8.5E-06 45.8 2.7 23 368-390 10-32 (181)
316 2f1r_A Molybdopterin-guanine d 87.7 0.26 8.9E-06 46.3 2.8 25 369-393 4-28 (171)
317 3foz_A TRNA delta(2)-isopenten 87.7 0.45 1.5E-05 49.0 4.8 28 369-396 12-39 (316)
318 1oxx_K GLCV, glucose, ABC tran 87.7 0.29 1E-05 51.7 3.5 26 368-393 32-57 (353)
319 1zj6_A ADP-ribosylation factor 87.6 0.27 9.2E-06 46.2 2.9 22 368-389 17-38 (187)
320 2y8e_A RAB-protein 6, GH09086P 87.6 0.26 8.7E-06 45.6 2.7 22 368-389 15-36 (179)
321 1svi_A GTP-binding protein YSX 87.6 0.25 8.4E-06 46.7 2.6 24 366-389 22-45 (195)
322 1w4r_A Thymidine kinase; type 87.5 0.75 2.6E-05 44.0 5.9 22 369-390 22-44 (195)
323 1z6t_A APAF-1, apoptotic prote 87.5 0.46 1.6E-05 53.8 5.3 45 334-388 124-168 (591)
324 2atv_A RERG, RAS-like estrogen 87.5 0.31 1E-05 46.3 3.2 24 367-390 28-51 (196)
325 1moz_A ARL1, ADP-ribosylation 87.5 0.19 6.6E-06 46.9 1.8 22 367-388 18-39 (183)
326 3fvq_A Fe(3+) IONS import ATP- 87.4 0.27 9.2E-06 52.0 3.0 26 368-393 31-56 (359)
327 3d3q_A TRNA delta(2)-isopenten 87.4 0.28 9.7E-06 51.3 3.2 27 369-395 9-35 (340)
328 2a5y_B CED-4; apoptosis; HET: 87.4 0.41 1.4E-05 53.8 4.8 44 337-389 131-174 (549)
329 1mh1_A RAC1; GTP-binding, GTPa 87.4 0.29 9.9E-06 45.6 3.0 22 368-389 6-27 (186)
330 3exa_A TRNA delta(2)-isopenten 87.4 0.35 1.2E-05 49.9 3.8 27 369-395 5-31 (322)
331 1g5t_A COB(I)alamin adenosyltr 87.4 0.75 2.6E-05 44.0 5.8 55 432-518 121-181 (196)
332 1rz3_A Hypothetical protein rb 87.4 0.32 1.1E-05 46.8 3.3 24 368-391 23-46 (201)
333 2a9k_A RAS-related protein RAL 87.4 0.29 9.9E-06 45.6 3.0 23 367-389 18-40 (187)
334 2cxx_A Probable GTP-binding pr 87.4 0.24 8.2E-06 46.4 2.4 22 368-389 2-23 (190)
335 3con_A GTPase NRAS; structural 87.3 0.29 1E-05 46.0 3.0 23 368-390 22-44 (190)
336 3aez_A Pantothenate kinase; tr 87.3 0.32 1.1E-05 50.5 3.5 26 368-393 91-116 (312)
337 3rlf_A Maltose/maltodextrin im 87.3 0.3 1E-05 52.0 3.3 26 368-393 30-55 (381)
338 1vg8_A RAS-related protein RAB 87.3 0.29 1E-05 46.7 3.0 24 367-390 8-31 (207)
339 1fzq_A ADP-ribosylation factor 87.3 0.27 9.3E-06 46.1 2.7 23 367-389 16-38 (181)
340 2yyz_A Sugar ABC transporter, 87.3 0.3 1E-05 51.7 3.3 26 368-393 30-55 (359)
341 3bwd_D RAC-like GTP-binding pr 87.3 0.32 1.1E-05 45.2 3.2 23 367-389 8-30 (182)
342 2bme_A RAB4A, RAS-related prot 87.3 0.27 9.3E-06 45.9 2.7 23 367-389 10-32 (186)
343 3reg_A RHO-like small GTPase; 87.2 0.27 9.3E-06 46.5 2.7 25 366-390 22-46 (194)
344 3c5c_A RAS-like protein 12; GD 87.2 0.3 1E-05 46.0 3.0 24 366-389 20-43 (187)
345 4eaq_A DTMP kinase, thymidylat 87.2 0.25 8.5E-06 48.8 2.5 25 368-392 27-51 (229)
346 1g29_1 MALK, maltose transport 87.2 0.27 9.1E-06 52.4 2.8 26 368-393 30-55 (372)
347 1m2o_B GTP-binding protein SAR 87.2 0.28 9.4E-06 46.5 2.7 22 368-389 24-45 (190)
348 2it1_A 362AA long hypothetical 87.2 0.31 1.1E-05 51.6 3.3 26 368-393 30-55 (362)
349 1xmk_A Double-stranded RNA-spe 87.2 1.6 5.6E-05 35.0 6.8 56 660-722 9-65 (79)
350 3tqn_A Transcriptional regulat 87.2 2.4 8.2E-05 36.5 8.5 45 676-723 28-73 (113)
351 2gf9_A RAS-related protein RAB 87.1 0.3 1E-05 45.9 3.0 23 368-390 23-45 (189)
352 3nh6_A ATP-binding cassette SU 87.1 0.3 1E-05 50.5 3.1 26 368-393 81-106 (306)
353 1v43_A Sugar-binding transport 87.1 0.31 1.1E-05 51.8 3.3 26 368-393 38-63 (372)
354 1q3t_A Cytidylate kinase; nucl 87.1 0.28 9.5E-06 48.5 2.8 29 368-396 17-45 (236)
355 2b6h_A ADP-ribosylation factor 87.1 0.28 9.6E-06 46.5 2.7 23 366-388 28-50 (192)
356 2ewv_A Twitching motility prot 87.0 0.33 1.1E-05 51.7 3.5 25 368-392 137-161 (372)
357 3q3j_B RHO-related GTP-binding 87.0 0.32 1.1E-05 47.1 3.1 25 365-389 25-49 (214)
358 3tkl_A RAS-related protein RAB 87.0 0.31 1.1E-05 45.9 3.0 23 367-389 16-38 (196)
359 2p5s_A RAS and EF-hand domain 86.9 0.33 1.1E-05 46.2 3.1 25 366-390 27-51 (199)
360 3dpu_A RAB family protein; roc 86.9 16 0.00053 40.6 17.4 59 664-722 291-364 (535)
361 2qm8_A GTPase/ATPase; G protei 86.8 0.29 9.8E-06 51.4 2.8 24 368-391 56-79 (337)
362 1sq5_A Pantothenate kinase; P- 86.8 0.32 1.1E-05 50.3 3.1 25 368-392 81-105 (308)
363 3t5g_A GTP-binding protein RHE 86.8 0.29 9.8E-06 45.6 2.5 23 367-389 6-28 (181)
364 2dr3_A UPF0273 protein PH0284; 86.8 0.33 1.1E-05 47.8 3.1 22 368-389 24-45 (247)
365 2xtp_A GTPase IMAP family memb 86.8 0.64 2.2E-05 46.4 5.3 23 367-389 22-44 (260)
366 3pqc_A Probable GTP-binding pr 86.8 0.36 1.2E-05 45.3 3.3 25 366-390 22-46 (195)
367 1cr0_A DNA primase/helicase; R 86.7 0.33 1.1E-05 49.7 3.2 24 368-391 36-59 (296)
368 1zbd_A Rabphilin-3A; G protein 86.7 0.3 1E-05 46.5 2.8 22 368-389 9-30 (203)
369 1x3s_A RAS-related protein RAB 86.7 0.33 1.1E-05 45.7 3.0 24 367-390 15-38 (195)
370 2fg5_A RAB-22B, RAS-related pr 86.7 0.31 1.1E-05 46.1 2.7 24 367-390 23-46 (192)
371 2zts_A Putative uncharacterize 86.7 0.34 1.2E-05 47.8 3.1 21 368-388 31-51 (251)
372 1tq4_A IIGP1, interferon-induc 86.6 0.52 1.8E-05 50.8 4.8 25 368-392 70-94 (413)
373 2a5j_A RAS-related protein RAB 86.6 0.34 1.2E-05 45.7 3.0 24 367-390 21-44 (191)
374 2xvc_A ESCRT-III, SSO0910; cel 86.6 1.3 4.4E-05 32.8 5.2 44 666-715 14-57 (59)
375 1nlf_A Regulatory protein REPA 86.6 0.28 9.6E-06 49.8 2.5 23 368-390 31-53 (279)
376 3by6_A Predicted transcription 86.5 2.1 7.1E-05 37.8 7.9 43 678-723 32-75 (126)
377 2q3h_A RAS homolog gene family 86.5 0.34 1.2E-05 46.1 2.9 25 365-389 18-42 (201)
378 1p9r_A General secretion pathw 86.5 0.28 9.7E-06 53.0 2.6 25 368-392 168-192 (418)
379 2fh5_B SR-beta, signal recogni 86.4 0.35 1.2E-05 46.5 3.0 24 367-390 7-30 (214)
380 2bcg_Y Protein YP2, GTP-bindin 86.3 0.32 1.1E-05 46.5 2.7 24 367-390 8-31 (206)
381 3dz8_A RAS-related protein RAB 86.3 0.33 1.1E-05 45.9 2.7 25 367-391 23-47 (191)
382 2zu0_C Probable ATP-dependent 86.3 0.34 1.2E-05 49.1 2.9 23 368-390 47-69 (267)
383 2cjw_A GTP-binding protein GEM 86.3 0.36 1.2E-05 45.8 3.0 22 368-389 7-28 (192)
384 3zvl_A Bifunctional polynucleo 86.2 0.28 9.4E-06 53.2 2.4 24 368-391 259-282 (416)
385 2d2e_A SUFC protein; ABC-ATPas 86.2 0.32 1.1E-05 48.7 2.7 23 368-390 30-52 (250)
386 3lda_A DNA repair protein RAD5 86.1 0.39 1.3E-05 51.6 3.4 21 368-388 179-199 (400)
387 3f8m_A GNTR-family protein tra 86.0 2.3 7.9E-05 42.3 8.9 54 665-723 21-75 (248)
388 3llu_A RAS-related GTP-binding 86.0 0.33 1.1E-05 46.1 2.5 24 366-389 19-42 (196)
389 3hr8_A Protein RECA; alpha and 85.9 0.32 1.1E-05 51.3 2.6 34 368-401 62-99 (356)
390 2il1_A RAB12; G-protein, GDP, 85.9 0.35 1.2E-05 45.8 2.7 22 367-388 26-47 (192)
391 1rj9_A FTSY, signal recognitio 85.9 0.36 1.2E-05 49.9 2.9 25 368-392 103-127 (304)
392 2h17_A ADP-ribosylation factor 85.8 0.3 1E-05 45.7 2.1 26 365-390 19-44 (181)
393 1pui_A ENGB, probable GTP-bind 85.8 0.23 7.8E-06 47.7 1.3 23 367-389 26-48 (210)
394 1on2_A Transcriptional regulat 85.7 3.5 0.00012 36.7 9.2 56 657-719 3-58 (142)
395 3cbq_A GTP-binding protein REM 85.7 0.31 1E-05 46.5 2.1 23 366-388 22-44 (195)
396 2bbs_A Cystic fibrosis transme 85.7 0.3 1E-05 50.1 2.2 26 368-393 65-90 (290)
397 2fu5_C RAS-related protein RAB 85.6 0.25 8.6E-06 46.1 1.5 21 368-388 9-29 (183)
398 3b9q_A Chloroplast SRP recepto 85.6 1.1 3.7E-05 46.2 6.4 27 366-392 99-125 (302)
399 2ek5_A Predicted transcription 85.6 3.2 0.00011 36.7 8.7 43 678-723 25-68 (129)
400 2ew1_A RAS-related protein RAB 85.6 0.37 1.3E-05 46.3 2.7 23 367-389 26-48 (201)
401 2pjz_A Hypothetical protein ST 85.5 0.35 1.2E-05 48.8 2.6 25 368-392 31-55 (263)
402 2f6r_A COA synthase, bifunctio 85.5 0.41 1.4E-05 48.8 3.1 23 368-390 76-98 (281)
403 1gwn_A RHO-related GTP-binding 85.5 0.38 1.3E-05 46.3 2.7 24 367-390 28-51 (205)
404 2x4h_A Hypothetical protein SS 85.4 1.4 4.7E-05 39.3 6.3 37 678-717 29-65 (139)
405 2x77_A ADP-ribosylation factor 85.4 0.29 9.7E-06 46.1 1.7 22 367-388 22-43 (189)
406 2h57_A ADP-ribosylation factor 85.3 0.32 1.1E-05 45.9 2.0 24 366-389 20-43 (190)
407 2o52_A RAS-related protein RAB 85.2 0.38 1.3E-05 45.9 2.5 23 367-389 25-47 (200)
408 2f7s_A C25KG, RAS-related prot 85.2 0.42 1.4E-05 46.1 2.9 23 367-389 25-47 (217)
409 2htj_A P fimbrial regulatory p 85.2 1.9 6.4E-05 34.6 6.4 44 666-716 4-47 (81)
410 3tqf_A HPR(Ser) kinase; transf 85.1 0.46 1.6E-05 44.6 2.9 23 368-390 17-39 (181)
411 3io5_A Recombination and repai 85.0 0.41 1.4E-05 49.5 2.8 36 365-402 28-69 (333)
412 1odf_A YGR205W, hypothetical 3 85.0 0.51 1.7E-05 48.4 3.5 26 368-393 32-57 (290)
413 2atx_A Small GTP binding prote 84.9 0.42 1.5E-05 45.1 2.7 24 367-390 18-41 (194)
414 1sfu_A 34L protein; protein/Z- 84.9 2.4 8.2E-05 33.5 6.5 50 664-717 14-63 (75)
415 1xx6_A Thymidine kinase; NESG, 84.9 1.5 5.2E-05 41.8 6.6 24 432-455 82-105 (191)
416 4bas_A ADP-ribosylation factor 84.8 0.42 1.4E-05 45.2 2.7 24 366-389 16-39 (199)
417 1f2t_A RAD50 ABC-ATPase; DNA d 84.8 0.45 1.5E-05 43.4 2.7 23 369-391 25-47 (149)
418 4gzl_A RAS-related C3 botulinu 84.7 0.44 1.5E-05 45.6 2.8 23 367-389 30-52 (204)
419 1f6b_A SAR1; gtpases, N-termin 84.6 0.37 1.3E-05 46.0 2.1 21 368-388 26-46 (198)
420 2qag_B Septin-6, protein NEDD5 84.6 0.33 1.1E-05 52.5 1.9 23 369-391 44-66 (427)
421 1oyi_A Double-stranded RNA-bin 84.6 1.3 4.4E-05 35.9 4.9 47 664-718 19-65 (82)
422 2hup_A RAS-related protein RAB 84.6 0.44 1.5E-05 45.5 2.7 24 367-390 29-52 (201)
423 3tui_C Methionine import ATP-b 84.6 0.5 1.7E-05 50.0 3.3 26 368-393 55-80 (366)
424 2fv8_A H6, RHO-related GTP-bin 84.6 0.43 1.5E-05 45.8 2.6 22 368-389 26-47 (207)
425 2j1l_A RHO-related GTP-binding 84.5 0.43 1.5E-05 46.1 2.6 23 367-389 34-56 (214)
426 2p8t_A Hypothetical protein PH 84.4 1.3 4.5E-05 42.3 5.8 43 679-724 29-71 (200)
427 1vma_A Cell division protein F 84.4 1.4 4.8E-05 45.4 6.6 24 368-391 105-128 (306)
428 2gco_A H9, RHO-related GTP-bin 84.4 0.45 1.5E-05 45.4 2.7 24 367-390 25-48 (201)
429 2qnr_A Septin-2, protein NEDD5 84.4 0.37 1.3E-05 49.7 2.2 22 368-389 19-40 (301)
430 3cr8_A Sulfate adenylyltranfer 84.4 0.53 1.8E-05 52.8 3.6 25 368-392 370-394 (552)
431 3k53_A Ferrous iron transport 84.3 0.42 1.4E-05 48.3 2.5 23 368-390 4-26 (271)
432 2g3y_A GTP-binding protein GEM 84.2 0.51 1.7E-05 45.8 3.0 23 366-388 36-58 (211)
433 3e70_C DPA, signal recognition 84.2 0.48 1.6E-05 49.5 3.0 25 368-392 130-154 (328)
434 2j0v_A RAC-like GTP-binding pr 84.2 0.46 1.6E-05 45.6 2.7 23 367-389 9-31 (212)
435 3k2z_A LEXA repressor; winged 84.2 1.5 5.2E-05 41.9 6.3 56 656-717 3-58 (196)
436 3gd7_A Fusion complex of cysti 84.2 0.4 1.4E-05 51.3 2.3 25 368-392 48-72 (390)
437 4ag6_A VIRB4 ATPase, type IV s 84.1 0.54 1.9E-05 50.3 3.4 26 365-390 33-58 (392)
438 3cpj_B GTP-binding protein YPT 84.0 0.53 1.8E-05 45.7 3.0 23 368-390 14-36 (223)
439 3a1s_A Iron(II) transport prot 84.0 0.45 1.5E-05 47.8 2.5 22 368-389 6-27 (258)
440 2qag_C Septin-7; cell cycle, c 83.9 0.43 1.5E-05 51.6 2.5 24 368-391 32-55 (418)
441 2v7f_A RPS19, RPS19E SSU ribos 83.8 1.4 4.8E-05 40.2 5.5 59 662-724 50-123 (150)
442 2gk6_A Regulator of nonsense t 83.7 0.96 3.3E-05 51.6 5.5 20 369-388 197-216 (624)
443 3edp_A LIN2111 protein; APC883 83.7 3.2 0.00011 40.8 8.7 43 678-723 30-73 (236)
444 2qu8_A Putative nucleolar GTP- 83.6 0.54 1.8E-05 45.9 2.9 23 367-389 29-51 (228)
445 4dhe_A Probable GTP-binding pr 83.5 0.54 1.8E-05 45.5 2.8 23 367-389 29-51 (223)
446 3e2i_A Thymidine kinase; Zn-bi 83.4 2.4 8.1E-05 41.2 7.2 28 431-458 101-128 (219)
447 2og2_A Putative signal recogni 83.4 1.5 5.1E-05 46.3 6.4 26 367-392 157-182 (359)
448 3cuo_A Uncharacterized HTH-typ 83.2 1.8 6.1E-05 35.8 5.7 40 678-720 36-75 (99)
449 1v5w_A DMC1, meiotic recombina 83.1 0.73 2.5E-05 48.4 3.9 23 368-390 123-145 (343)
450 1c9k_A COBU, adenosylcobinamid 83.0 0.65 2.2E-05 43.9 3.1 21 370-390 2-22 (180)
451 1np6_A Molybdopterin-guanine d 83.0 0.62 2.1E-05 43.8 2.9 24 368-391 7-30 (174)
452 1q1h_A TFE, transcription fact 83.0 1.3 4.5E-05 37.8 4.8 36 678-716 31-66 (110)
453 1u0l_A Probable GTPase ENGC; p 82.9 0.48 1.7E-05 48.8 2.3 26 368-393 170-195 (301)
454 1bif_A 6-phosphofructo-2-kinas 82.9 0.61 2.1E-05 51.3 3.2 25 367-391 39-63 (469)
455 3b1v_A Ferrous iron uptake tra 82.8 0.59 2E-05 47.4 2.9 23 368-390 4-26 (272)
456 2zr9_A Protein RECA, recombina 82.8 0.52 1.8E-05 49.7 2.5 22 368-389 62-83 (349)
457 2yv5_A YJEQ protein; hydrolase 82.7 0.85 2.9E-05 46.9 4.1 24 368-392 166-189 (302)
458 3t5d_A Septin-7; GTP-binding p 82.6 0.51 1.7E-05 47.8 2.3 22 367-388 8-29 (274)
459 4dkx_A RAS-related protein RAB 82.5 0.62 2.1E-05 45.4 2.8 22 368-389 14-35 (216)
460 2z43_A DNA repair and recombin 82.4 0.68 2.3E-05 48.2 3.3 23 368-390 108-130 (324)
461 2hf9_A Probable hydrogenase ni 82.4 0.66 2.3E-05 45.0 3.0 23 368-390 39-61 (226)
462 2npi_A Protein CLP1; CLP1-PCF1 82.4 0.56 1.9E-05 51.4 2.6 25 368-392 139-163 (460)
463 2yc2_C IFT27, small RAB-relate 82.4 0.33 1.1E-05 46.2 0.8 23 367-389 20-42 (208)
464 3eph_A TRNA isopentenyltransfe 82.3 0.81 2.8E-05 48.9 3.8 28 369-396 4-31 (409)
465 1xjc_A MOBB protein homolog; s 82.3 0.7 2.4E-05 43.2 3.0 23 369-391 6-28 (169)
466 3cuq_B Vacuolar protein-sortin 82.2 2.4 8.3E-05 41.2 6.9 104 602-718 96-203 (218)
467 2obl_A ESCN; ATPase, hydrolase 82.1 0.8 2.8E-05 48.2 3.7 27 368-394 72-98 (347)
468 3i8s_A Ferrous iron transport 82.0 0.63 2.2E-05 47.1 2.7 23 368-390 4-26 (274)
469 3bwg_A Uncharacterized HTH-typ 82.0 4.5 0.00015 39.9 9.0 46 675-723 23-69 (239)
470 3r7w_A Gtpase1, GTP-binding pr 82.0 0.64 2.2E-05 48.0 2.8 22 368-389 4-25 (307)
471 3fdi_A Uncharacterized protein 81.9 0.85 2.9E-05 43.9 3.5 29 368-396 7-35 (201)
472 2dpy_A FLII, flagellum-specifi 81.9 0.89 3E-05 49.5 4.0 27 368-394 158-184 (438)
473 1qhl_A Protein (cell division 81.8 0.37 1.3E-05 47.5 0.9 23 371-393 31-53 (227)
474 2wjy_A Regulator of nonsense t 81.8 1 3.4E-05 53.0 4.7 21 369-389 373-393 (800)
475 2h09_A Transcriptional regulat 81.8 3.1 0.00011 37.7 7.2 38 679-719 53-90 (155)
476 3jth_A Transcription activator 81.7 1.9 6.5E-05 35.8 5.3 40 679-721 35-74 (98)
477 3c7j_A Transcriptional regulat 81.7 7.1 0.00024 38.3 10.3 45 675-722 44-88 (237)
478 2kko_A Possible transcriptiona 81.7 3.2 0.00011 35.3 6.8 39 680-721 38-76 (108)
479 2fu4_A Ferric uptake regulatio 81.6 3.3 0.00011 33.2 6.5 50 666-718 21-73 (83)
480 2rcn_A Probable GTPase ENGC; Y 81.6 0.61 2.1E-05 49.2 2.5 25 368-392 216-240 (358)
481 2yhs_A FTSY, cell division pro 81.6 0.81 2.8E-05 50.3 3.5 26 366-391 292-317 (503)
482 1t9h_A YLOQ, probable GTPase E 81.3 0.51 1.7E-05 48.8 1.7 24 368-391 174-197 (307)
483 3iby_A Ferrous iron transport 81.3 0.64 2.2E-05 46.6 2.5 22 369-390 3-24 (256)
484 2www_A Methylmalonic aciduria 81.3 0.82 2.8E-05 48.2 3.4 23 368-390 75-97 (349)
485 2axn_A 6-phosphofructo-2-kinas 81.3 0.68 2.3E-05 51.6 2.9 24 368-391 36-59 (520)
486 2wsm_A Hydrogenase expression/ 81.2 0.7 2.4E-05 44.6 2.7 23 368-390 31-53 (221)
487 2ocp_A DGK, deoxyguanosine kin 81.0 0.87 3E-05 44.9 3.3 25 368-392 3-27 (241)
488 1g8f_A Sulfate adenylyltransfe 81.0 1.4 4.6E-05 48.9 5.1 25 368-392 396-420 (511)
489 1p5z_B DCK, deoxycytidine kina 80.9 0.49 1.7E-05 47.5 1.4 25 368-392 25-49 (263)
490 1tf7_A KAIC; homohexamer, hexa 80.7 0.64 2.2E-05 51.9 2.4 37 364-400 36-77 (525)
491 2i1q_A DNA repair and recombin 80.7 0.77 2.6E-05 47.6 2.9 23 368-390 99-121 (322)
492 3gmt_A Adenylate kinase; ssgci 80.6 0.68 2.3E-05 45.6 2.3 29 368-396 9-37 (230)
493 3llm_A ATP-dependent RNA helic 80.3 1.2 3.9E-05 43.9 3.9 20 368-387 77-96 (235)
494 3th5_A RAS-related C3 botulinu 81.3 0.34 1.2E-05 46.3 0.0 22 367-388 30-51 (204)
495 1yqt_A RNAse L inhibitor; ATP- 80.1 0.92 3.1E-05 50.8 3.5 26 368-393 48-73 (538)
496 2px0_A Flagellar biosynthesis 80.1 0.78 2.7E-05 47.1 2.6 24 368-391 106-129 (296)
497 3euj_A Chromosome partition pr 79.9 0.78 2.7E-05 50.4 2.7 26 368-393 30-55 (483)
498 3hrs_A Metalloregulator SCAR; 79.7 5.2 0.00018 38.7 8.4 48 669-719 9-56 (214)
499 3bh0_A DNAB-like replicative h 79.6 0.83 2.8E-05 47.3 2.7 22 368-389 69-90 (315)
500 1u94_A RECA protein, recombina 79.6 0.85 2.9E-05 48.2 2.8 32 368-399 64-99 (356)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.8e-95 Score=835.41 Aligned_cols=583 Identities=38% Similarity=0.613 Sum_probs=527.2
Q ss_pred HHHHHHHHHHhccccCCCcchhHHHHhcC----CCEEEEecchhhccCchHHHHHHhCHHHHHHHHHHHHHHHHHHhccc
Q 004862 34 TTLIKFKEFIRNFERDKNVFPYRESLIEN----PKFLLVHLEDLLAFDADLPSLLRSSPADFLPLFETAAAEVLASLKMK 109 (726)
Q Consensus 34 ~~~~~f~~Fl~~f~~~~~~~~Y~~~l~~~----~~~l~Vd~~dL~~f~~~La~~l~~~P~~~l~~~~~a~~e~~~~~~~~ 109 (726)
+++++|++||++|.+.++.++|+++|+++ ..+|.||++||.+|+|+|+++|+++|.+++++|+.|+++++.+..+.
T Consensus 3 ~~~~~f~~Fl~~~~~~~~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~~~~ 82 (595)
T 3f9v_A 3 DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPT 82 (595)
T ss_dssp CHHHHHHHHHHHCCTTTTSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhhhccCCChhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHhhchh
Confidence 47889999999999888899999998764 67899999999999999999999999999999999999998876544
Q ss_pred cCCCCCCcceEEEEecCCCCcccccccCccCCCcEEEEEeEEEEeecceeeEEEEEEEecC--CCCeEEEecC-CCCCCC
Q 004862 110 VDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAASRVKAKATYVHLSCKN--CKSTLDVPCR-PGLGGA 186 (726)
Q Consensus 110 ~~~~~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~GiV~~~s~v~~~~~~~~~~C~~--C~~~~~~~~~-~~~~~~ 186 (726)
+. ....+++|+|+|.|....+|+|++.++||||+|+|+|+|+|.|+|++.+++|.|.. |++.+.+... ...+.+
T Consensus 83 ~~---~~~~~~~v~~~~~~~~~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~ 159 (595)
T 3f9v_A 83 YQ---RDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVL 159 (595)
T ss_dssp GT---TTCCCCCCCEECCSCEECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSC
T ss_pred hh---hccceEEEEEeCCCCCCChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcc
Confidence 32 22346899999999999999999999999999999999999999999999999999 9998765531 222467
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CeEEecCCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccccccCCcEEEEEEEE
Q 004862 187 IVPRSCGHIPQAGEEPCPID-PWIIVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIY 265 (726)
Q Consensus 187 ~~P~~C~~~~~~g~~~C~~~-~~~~~~~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V~GIl 265 (726)
..|..|++ |++. +|.++.+.|.|+|||+|+|||.|+++|.|++||+++|+|++||||+|+|||+|.||||+
T Consensus 160 ~~p~~C~~--------C~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~ 231 (595)
T 3f9v_A 160 EMPTICPK--------CGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGIL 231 (595)
T ss_dssp CCCSSCTT--------TCCCSEEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEEC
T ss_pred cCCCcCCC--------CCCCCceEEeccCceeeeeEEEEEEeccccCCCCCCCceEEEEEecccccccccCCEEEEEEEE
Confidence 89999987 8864 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCCCCCCcceeEeeeEEEEEeeeeeccccccCCCCCCHHHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHH
Q 004862 266 SIFQSANSPASHKGAVAVRQPYIRVVGLEETNEASSRGAAAFTQEEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKA 345 (726)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~a 345 (726)
++.+..+ ..++...++..||++++|+...+ ......+|+++++.+.++++++++|+.|.++++|.|+|++.+|++
T Consensus 232 ~~~~~~~---~~~~~~~~~~~~i~a~~i~~~~~--~~~~~~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~a 306 (595)
T 3f9v_A 232 DIKQDSP---VKRGSRAVFDIYMKVSSIEVSQK--VLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEA 306 (595)
T ss_dssp CCCCSST---TSCTTCCCCCCCCEEEEEEECCC--CCCCCCCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHH
T ss_pred Eeccccc---ccCCCcceEEEEEEEEeeccccc--ccccCCCCHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHH
Confidence 9887653 22344567999999999987644 345567999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccC
Q 004862 346 VSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGG 425 (726)
Q Consensus 346 ill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G 425 (726)
++++|++|..+..++ .+.|+++||||+||||||||+||+++++.+++..++.+.+.+..+++++..++..++.|...+|
T Consensus 307 l~~~l~~g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G 385 (595)
T 3f9v_A 307 LALALFGGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAG 385 (595)
T ss_dssp HTTTTTCCCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEEC
T ss_pred HHHHHhCCCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCC
Confidence 999999998887777 8899999999999999999999999999999999988887888899998888777888999999
Q ss_pred ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh
Q 004862 426 AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL 505 (726)
Q Consensus 426 ~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll 505 (726)
++.+|++||||||||++|+++.|+.|+++||++.+++.++|....++++++||||+||.+|+|+...+..+++.++++|+
T Consensus 386 ~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl 465 (595)
T 3f9v_A 386 ALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTIL 465 (595)
T ss_dssp HHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSG
T ss_pred eeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred cccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHH
Q 004862 506 SRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRK 585 (726)
Q Consensus 506 ~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~ 585 (726)
+|||+++.+.+.++++ |..|++|++..|... ...+.++.++|++|+.||+..+.|.+++++.+.|.++|..+|+
T Consensus 466 ~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~-----~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~ 539 (595)
T 3f9v_A 466 SRFDLIFILKDQPGEQ-DRELANYILDVHSGK-----STKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRK 539 (595)
T ss_dssp GGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC-----SSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSC
T ss_pred hhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc-----ccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999987642 2236788899999999999989999999999999999999987
Q ss_pred HHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhh
Q 004862 586 DMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMD 644 (726)
Q Consensus 586 ~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~ 644 (726)
..... ....|++|+|+|++++|+|+|+|++++++.|+++|+.+|+++++.|+.+
T Consensus 540 ~~~~~-----~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~sl~~ 593 (595)
T 3f9v_A 540 KSSET-----PDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFLES 593 (595)
T ss_dssp SCCBC-----SSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHT
T ss_pred hhccC-----CCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHHHh
Confidence 65431 1236999999999999999999999999999999999999999998754
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=1.1e-70 Score=593.30 Aligned_cols=382 Identities=27% Similarity=0.407 Sum_probs=329.3
Q ss_pred CCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccc------cccCCcEEEEEEEEEeeeCCCCCCCCCcceeEeee
Q 004862 213 DKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQ------TIVPGTRLTIMGIYSIFQSANSPASHKGAVAVRQP 286 (726)
Q Consensus 213 ~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~------~~~pGd~V~V~GIl~~~~~~~~~~~~~~~~~~~~~ 286 (726)
+++.|.|+|+|+|||.|+++|.|++||+++|+|++|||| +|+|||+|+|+||++..
T Consensus 109 ~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~------------------ 170 (506)
T 3f8t_A 109 ERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA------------------ 170 (506)
T ss_dssp SCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT------------------
T ss_pred hhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe------------------
Confidence 466789999999999999999999999999999999999 99999999999999731
Q ss_pred EEEEEeeeeeccccccCCCCCCHHHHHHHHHHhcCcchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccC
Q 004862 287 YIRVVGLEETNEASSRGAAAFTQEEIEKFKKFASQPDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRG 366 (726)
Q Consensus 287 ~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~ 366 (726)
||++++|+... ......+|++|++.|++++++ ++|+.|+++|+| |+|++.+|+|++++|+||..+ .||
T Consensus 171 ~l~a~~i~~~~---~~~~~~~t~ed~~~i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-------~rg 238 (506)
T 3f8t_A 171 TLDALEVHKKD---PIPEVHPDPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-------NSE 238 (506)
T ss_dssp EEEEEEEEEEC---SSCCCCCCHHHHHHHHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-------GGG
T ss_pred EEEEEEEEEcC---ccccCCCCHHHHHHHHHHHHH-HHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-------cCC
Confidence 89999998732 345678999999999999999 999999999999 999999999999999999654 789
Q ss_pred cceEEEECCCchhHHHHHHHH-HHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFV-EKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP 445 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i-~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~ 445 (726)
++||||+|+||| ||+||+++ ++++|+.+|++|.+++..|++++ .+++ +| |.+++|++++|++|+||||||++|++
T Consensus 239 dihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 239 RLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPE 314 (506)
T ss_dssp CCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCH
T ss_pred ceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCH
Confidence 999999999999 99999999 99999999999988888899988 7777 78 99999999999999999999999999
Q ss_pred HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHH
Q 004862 446 EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKL 525 (726)
Q Consensus 446 ~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~ 525 (726)
+.|++|+++||+|+|++. |. .+|++|+||||+||.. +|++.++. ++..|++++||||||++.+.+.+++++|.+
T Consensus 315 ~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e 388 (506)
T 3f8t_A 315 PHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQDFLSHFDLIAFLGVDPRPGEPEE 388 (506)
T ss_dssp HHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGG-GGCCSCHHHHTTCSEEEETTC---------
T ss_pred HHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccCCCCCc-cccCCChHHhhheeeEEEecCCCChhHhhc
Confidence 999999999999999987 65 9999999999999976 88887777 899999999999999999999998887742
Q ss_pred HHHHHHHHhhhcccccccccccCCHHHHHHHHHHhH-ccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCCh
Q 004862 526 IASHIIKIHASADAVSADSKVSKEENWLKRYIQYCR-LECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITV 604 (726)
Q Consensus 526 i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~-~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~ 604 (726)
.....++.+.|++|+.||| .++.|.+++++.++|.++|..+|...... .......+++|+
T Consensus 389 -----------------~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~--~~~~~~~~giSp 449 (506)
T 3f8t_A 389 -----------------QDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEER--LGMGLPTLPVTR 449 (506)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHH--HHTTCCCCCCCH
T ss_pred -----------------ccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccc--cccccccccccH
Confidence 1125789999999999999 67899999999999999999999842110 011124689999
Q ss_pred hHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhh---cCcccc
Q 004862 605 RQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAAR---SGINQQ 653 (726)
Q Consensus 605 R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~---~~~~~~ 653 (726)
|++++|+|+|+|+|+|++++.|+++||.+|++|++.|+.+.+. +|.+|.
T Consensus 450 R~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~a~dp~tg~id~ 501 (506)
T 3f8t_A 450 RQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQIPGGDEIRI 501 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeEeE
Confidence 9999999999999999999999999999999999999987753 455543
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=3.4e-50 Score=418.12 Aligned_cols=266 Identities=24% Similarity=0.440 Sum_probs=209.6
Q ss_pred cccHHHHHHHHHHHHhccccCCCcchhHHHHhc------CCCEEEEecchhhccCchHHHHHHhCHHHHHHHHHHHHHHH
Q 004862 29 NHRRHTTLIKFKEFIRNFERDKNVFPYRESLIE------NPKFLLVHLEDLLAFDADLPSLLRSSPADFLPLFETAAAEV 102 (726)
Q Consensus 29 ~~~~~~~~~~f~~Fl~~f~~~~~~~~Y~~~l~~------~~~~l~Vd~~dL~~f~~~La~~l~~~P~~~l~~~~~a~~e~ 102 (726)
.+.+++++++|++||++| +|+++|++ +..+|.||++||.+|+|+||+.|+++|.+++++|+.|++++
T Consensus 8 ~~~~~~~~~~f~~Fl~~~-------~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~ 80 (279)
T 1ltl_A 8 TVDKSKTLTKFEEFFSLQ-------DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNI 80 (279)
T ss_dssp -CCHHHHHHHHHHHTTSH-------HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTT
T ss_pred cCChHHHHHHHHHHhccc-------hHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 577889999999999987 58888754 35689999999999999999999999999999999999886
Q ss_pred HHHhccccCCCCCCcceEEEEecCCCCcccccccCccCCCcEEEEEeEEEEeecceeeEEEEEEEecCCCCeEEEecCCC
Q 004862 103 LASLKMKVDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAASRVKAKATYVHLSCKNCKSTLDVPCRPG 182 (726)
Q Consensus 103 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~GiV~~~s~v~~~~~~~~~~C~~C~~~~~~~~~~~ 182 (726)
. ++. ... .++|+|.|.+....+|+|+++++||||+|+|+|+|+|.|+|++++++|.|..||+...+++..
T Consensus 81 ~-----~~~---~~~-~~~vr~~~~~~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~- 150 (279)
T 1ltl_A 81 D-----RLR---KNV-DLNIRFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQST- 150 (279)
T ss_dssp C-----TTC---CCC-CCEEEEECCSCBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECSS-
T ss_pred c-----ccc---CCe-eEEEEEECCCCCCCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEecC-
Confidence 3 111 123 789999999999999999999999999999999999999999999999999999998777653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEecCCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccccccCCcEEEEE
Q 004862 183 LGGAIVPRSCGHIPQAGEEPCPIDPWIIVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIM 262 (726)
Q Consensus 183 ~~~~~~P~~C~~~~~~g~~~C~~~~~~~~~~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V~ 262 (726)
+.+..|..|++ |++++|.++++.|+|+|||+|+|||.|+++|.|++||+++|+|++||||+|+|||+|+||
T Consensus 151 -~~~~~P~~Cp~--------C~~~~f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vt 221 (279)
T 1ltl_A 151 -NMITEPSLCSE--------CGGRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVT 221 (279)
T ss_dssp -SSCCCCSCCTT--------TCCCCEEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEE
T ss_pred -CcccCCCcCCC--------CCCCCcEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCEEEEE
Confidence 46889999987 987779999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCCCCCCCCCcceeEeeeEEEEEeeeeeccccccCCCCCCHHHHHHHHHHhcCcchHHHHHH
Q 004862 263 GIYSIFQSANSPASHKGAVAVRQPYIRVVGLEETNEASSRGAAAFTQEEIEKFKKFASQPDAYKTVCS 330 (726)
Q Consensus 263 GIl~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (726)
||+++.+.. ..+++.+||+|++|+...+ ......+|++|+++|++++++|++|++|++
T Consensus 222 GI~~~~~~~--------~~~~~~~~l~a~~I~~~~~--~~~~~~~t~ed~~~i~~ls~~~~iy~~L~~ 279 (279)
T 1ltl_A 222 GTLRTVRDE--------RTKRFKNFIYGNYTEFLEQ--EFEELQISEEDEEKIKELAGDPNIYEKIIR 279 (279)
T ss_dssp EEEEEEEET--------TTTEEEEEEEEEECCBC----------------------------------
T ss_pred EEEEEeeCC--------CCceEEEEEEEEEEEEecC--ccccCCCCHHHHHHHHHHhcCCCHHHHhhC
Confidence 999988632 2357999999999987654 234568999999999999999999998863
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-47 Score=397.23 Aligned_cols=249 Identities=26% Similarity=0.457 Sum_probs=221.3
Q ss_pred HHHHHHHHHHhccccCCCcchhHHHHhc----CCCEEEEecchhhccCchHHHHHHhCHHHHHHHHHHHHHHHHHHhccc
Q 004862 34 TTLIKFKEFIRNFERDKNVFPYRESLIE----NPKFLLVHLEDLLAFDADLPSLLRSSPADFLPLFETAAAEVLASLKMK 109 (726)
Q Consensus 34 ~~~~~f~~Fl~~f~~~~~~~~Y~~~l~~----~~~~l~Vd~~dL~~f~~~La~~l~~~P~~~l~~~~~a~~e~~~~~~~~ 109 (726)
++.++|++||.+|.+.++.++|+++|++ +..+|.||++||.+|+++||++|+++|.+++++|++|+++++....+.
T Consensus 9 ~~~~~f~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~ 88 (268)
T 2vl6_A 9 DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPT 88 (268)
T ss_dssp CHHHHHHHHHHHCCCSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHhhhcccCchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHhCch
Confidence 6788999999999877788999999875 457899999999999999999999999999999999999999876544
Q ss_pred cCCCCCCcceEEEEecCCCCcccccccCccCCCcEEEEEeEEEEeecceeeEEEEEEEe--cCCCCeEEEecC-CCCCCC
Q 004862 110 VDNEEPKTEEVQILLTSKEDSMSMRSIGAQFISKLVKISGITIAASRVKAKATYVHLSC--KNCKSTLDVPCR-PGLGGA 186 (726)
Q Consensus 110 ~~~~~~~~~~i~v~~~~~~~~~~ir~l~s~~igkLV~v~GiV~~~s~v~~~~~~~~~~C--~~C~~~~~~~~~-~~~~~~ 186 (726)
+. ...+.++|+|.|.+....+|+|+++++||||+|+|+|+|+|.|+|++++++|.| ..||+.+.+.+. ...+.+
T Consensus 89 ~~---~~~~~~~vr~~~~~~~~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~ 165 (268)
T 2vl6_A 89 YQ---RDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVL 165 (268)
T ss_dssp GT---TTCSCCCEEEECCSCEECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTC
T ss_pred hh---ccCccEEEEEECCCCCCccccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcc
Confidence 32 234679999999999999999999999999999999999999999999999999 999999876631 234568
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CeEEecCCCceeeeeEEEeecCCCCCCCCCCceEEEEEEecCccccccCCcEEEEEEEE
Q 004862 187 IVPRSCGHIPQAGEEPCPID-PWIIVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIY 265 (726)
Q Consensus 187 ~~P~~C~~~~~~g~~~C~~~-~~~~~~~~s~~~d~Q~I~iQE~~e~~~~g~~Pr~i~v~l~~dLv~~~~pGd~V~V~GIl 265 (726)
..|..|+. |+++ +|.++.+.|+|+|||+|+|||.|+.+|.|++||+++|+|++||||+|+|||+|+||||+
T Consensus 166 ~~P~~Cp~--------C~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~ 237 (268)
T 2vl6_A 166 EMPTICPK--------CGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGIL 237 (268)
T ss_dssp CCCSBCTT--------TCCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEE
T ss_pred cCCccCCC--------CCCCCCEEEecCccEEEeeEEEEEEeCCCCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEE
Confidence 99999986 8875 69999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCCCCCCcceeEeeeEEEEEeeeee
Q 004862 266 SIFQSANSPASHKGAVAVRQPYIRVVGLEET 296 (726)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ 296 (726)
++.+..+ ..++..+++.+||+|++|+..
T Consensus 238 ~~~~~~~---~~~~~~~~~~~yl~an~I~~~ 265 (268)
T 2vl6_A 238 DIKQDSP---VKRGSRAVFDIYMKVSSIEVS 265 (268)
T ss_dssp EEECSST---TCCSSCCEEEEEEEEEEEEEC
T ss_pred EEeeccc---ccCCCceEEEEEEEEEEEEEe
Confidence 9988653 123456789999999999865
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.93 E-value=2.9e-24 Score=230.17 Aligned_cols=284 Identities=15% Similarity=0.154 Sum_probs=201.9
Q ss_pred cchHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe--CC
Q 004862 322 PDAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT--SG 399 (726)
Q Consensus 322 ~~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~--~g 399 (726)
.+.++++...+.+.|+|++.++++++.++.++ .|+||+||||||||++|+++++.++..++. ..
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--------------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTG--------------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--------------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcC--------------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecC
Confidence 35678899999999999999999999999876 589999999999999999999988776543 11
Q ss_pred CCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEE
Q 004862 400 KGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLA 479 (726)
Q Consensus 400 ~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iia 479 (726)
......++......+...+.|...+|.+ .++++||||++.++++.+..|+++|+++.+++ .|.....+.++.++|
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~via 155 (331)
T 2r44_A 81 PDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVLA 155 (331)
T ss_dssp TTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEE
T ss_pred CCCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceee--CCEEEECCCCEEEEE
Confidence 1222222333333222234444444443 25899999999999999999999999999876 577778899999999
Q ss_pred ecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHH
Q 004862 480 AANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQY 559 (726)
Q Consensus 480 a~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~ 559 (726)
|+||... .....++++|++||++.+.+..+..++ ... ++..+..... .......++.+.+......
T Consensus 156 t~np~~~--------~~~~~l~~~l~~Rf~~~i~i~~p~~~~-~~~----il~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 221 (331)
T 2r44_A 156 TQNPVEQ--------EGTYPLPEAQVDRFMMKIHLTYLDKES-ELE----VMRRVSNMNF-NYQVQKIVSKNDVLEIRNE 221 (331)
T ss_dssp EECTTCC--------SCCCCCCHHHHTTSSEEEECCCCCHHH-HHH----HHHHHHCTTC-CCCCCCCSCHHHHHHHHHH
T ss_pred ecCCCcc--------cCcccCCHHHHhheeEEEEcCCCCHHH-HHH----HHHhccccCc-chhccccCCHHHHHHHHHH
Confidence 9998531 011248899999999888777664332 222 2322222111 1112345677777666555
Q ss_pred hHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 004862 560 CRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFT 639 (726)
Q Consensus 560 a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 639 (726)
.+ ...+++++.+++.+.+..+|...............++.|+|.+.++++.|.++|.+++++.|+++|+.+|+..+.
T Consensus 222 ~~---~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 222 IN---KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HH---TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred hc---cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 54 236899999999999888875431000000000135689999999999999999999999999999999998765
Q ss_pred hh
Q 004862 640 VS 641 (726)
Q Consensus 640 ~s 641 (726)
.+
T Consensus 299 ~~ 300 (331)
T 2r44_A 299 NH 300 (331)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 6
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.91 E-value=7.1e-24 Score=228.62 Aligned_cols=266 Identities=18% Similarity=0.186 Sum_probs=191.6
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcc--------
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAA-------- 405 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~-------- 405 (726)
.+|+|++.+++++..+++.+. ..|+||+||||||||++|+++++.+++..+..+......
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDW 91 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTT
T ss_pred hhccChHHHHHHHHHHhhCCC------------CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccch
Confidence 458999999999877776541 147999999999999999999999886443322111100
Q ss_pred -------------------------cccceeeecC--CCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcc
Q 004862 406 -------------------------GLTASVIRDG--SSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQ 458 (726)
Q Consensus 406 -------------------------gl~~~~~~~~--~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~ 458 (726)
.+.+...... ..+.+...+|.+..+++|++||||++.++++.++.|+++|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 92 ATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp CCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred hhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 0000000000 0112334567777788999999999999999999999999999
Q ss_pred eEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcc
Q 004862 459 TISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASAD 538 (726)
Q Consensus 459 ~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~ 538 (726)
...+.+.|.....+.++.+|+|+||..+ .++++|++||++.+.++.+++.+....|..+.+.......
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~~------------~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~ 239 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEEG------------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPK 239 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCSC------------CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHH
T ss_pred ceEEEecceEEeeCCceEEEEEeCCCCC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCch
Confidence 9888899998889999999999997432 3789999999998999888777666666666544321100
Q ss_pred cccccccccCCHHHHHHHHHHhHccC-CCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccC-ChhHHHHHHHHHHH
Q 004862 539 AVSADSKVSKEENWLKRYIQYCRLEC-HPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPI-TVRQLEAIVRLSEA 616 (726)
Q Consensus 539 ~~~~~~~~~~~~~~L~~yi~~a~~~~-~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~-t~R~L~~lirla~a 616 (726)
. .......+...+++++.+++... ...+++++.+.|.+++.. ..+ ++|++.++++.|.+
T Consensus 240 ~--~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~-----------------~~~~~~R~~~~ll~~a~~ 300 (350)
T 1g8p_A 240 A--FLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIA-----------------LGSDGLRGELTLLRSARA 300 (350)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHH-----------------SSSCSHHHHHHHHHHHHH
T ss_pred h--hccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-----------------hCCCCccHHHHHHHHHHH
Confidence 0 00001123445677776665432 236999999999998531 113 68999999999999
Q ss_pred HHhhhCCCcccHHHHHHHHHHHhhhh
Q 004862 617 LAKMKLSHVATENEVNEAVRLFTVST 642 (726)
Q Consensus 617 ~A~l~~~~~V~~~Dv~~ai~l~~~s~ 642 (726)
+|.+++++.|+.+|+.+|+.++..+.
T Consensus 301 ~A~~~~~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 301 LAALEGATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp HHHHTTCSBCCHHHHHHHHHHHHGGG
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999877654
No 7
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.91 E-value=6.9e-23 Score=228.90 Aligned_cols=264 Identities=14% Similarity=0.142 Sum_probs=185.0
Q ss_pred chHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc---EEeCC
Q 004862 323 DAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA---VYTSG 399 (726)
Q Consensus 323 ~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~---~~~~g 399 (726)
+.++.+.+++.+.|+|++.+++++++++.++ .||||+||||||||++|++++..++.. .+...
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~--------------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT--------------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--------------CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4578899999999999999999999999887 699999999999999999999988652 12222
Q ss_pred CCCCcccccceeeecC--CCchhh-hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 400 KGSSAAGLTASVIRDG--SSREFY-LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 400 ~~~~~~gl~~~~~~~~--~~~~~~-~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
...+...+++...... ..+.+. ...|. ++..+|+|||||++++++.++.|+++|+++.+++ .|....++.++
T Consensus 77 ~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~- 151 (500)
T 3nbx_X 77 RFSTPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL- 151 (500)
T ss_dssp TTCCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-
T ss_pred hcCCHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-
Confidence 2112222222111000 011111 12222 2245689999999999999999999999999875 67777888876
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHH
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRY 556 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~y 556 (726)
+|+|||+.. +...+.+++++||.+.+.++.+..++....| +..+.............++.+.+..+
T Consensus 152 iI~ATN~lp----------e~~~~~~aLldRF~~~i~v~~p~~~ee~~~I----L~~~~~~~~~~~~~~~~~~~e~l~~~ 217 (500)
T 3nbx_X 152 LVAASNELP----------EADSSLEALYDRMLIRLWLDKVQDKANFRSM----LTSQQDENDNPVPDALQVTDEEYERW 217 (500)
T ss_dssp EEEEESSCC----------CTTCTTHHHHTTCCEEEECCSCCCHHHHHHH----HTCCCCTTSCCSCTTTSBCHHHHHHH
T ss_pred hhhccccCC----------CccccHHHHHHHHHHHHHHHHhhhhhhHHHH----HhcccccCCCCCCccceecHHHHHHH
Confidence 677778621 1223568999999888887766643332322 32222111111122356888899988
Q ss_pred HHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 004862 557 IQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN 632 (726)
Q Consensus 557 i~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~ 632 (726)
..+++. ..+++++.+++.+.+..+|... ....+|+|.+.+++++|+|+|.+++++.|+++|+.
T Consensus 218 ~~~~~~---v~v~d~v~e~i~~l~~~lr~~r----------~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 218 QKEIGE---ITLPDHVFELIFMLRQQLDKLP----------DAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHTT---CBCCHHHHHHHHHHHHHHHHCS----------SSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HhcCCc---ccCchHHHHHHHHHHHHhhcCC----------CCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 877754 3589999999988876665432 12457999999999999999999999999999998
No 8
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.90 E-value=1.2e-23 Score=222.11 Aligned_cols=264 Identities=17% Similarity=0.252 Sum_probs=175.2
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee-------------ecCCCchhhhccCceeecCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI-------------RDGSSREFYLEGGAMVLADGG 433 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~-------------~~~~~~~~~~~~G~l~la~~g 433 (726)
+.+|||+||||||||++|+++|..+++... ++..++|+.. +...++......|.+..+++|
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~------~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g 98 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDR------PLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 98 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSS------CCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCC------CeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCC
Confidence 378999999999999999999998865311 1111111111 111123333345667788999
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eee
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIF 512 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~ 512 (726)
++|||||+.|+++.|..|+.+|+++.+ .+.|.....+.+++||+|||+. .........|.++|++||+ +.+
T Consensus 99 ~L~LDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~riI~atn~~------l~~~v~~g~fr~~L~~Rl~~~~i 170 (304)
T 1ojl_A 99 TLFLDEIGDISPLMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAATHRD------LAEEVSAGRFRQDLYYRLNVVAI 170 (304)
T ss_dssp EEEEESCTTCCHHHHHHHHHHHHSSBC--CBTTBCCCCBCCCEEEEEESSC------HHHHHHHTSSCHHHHHHHSSEEE
T ss_pred EEEEeccccCCHHHHHHHHHHHhcCEe--eecCCcccccCCeEEEEecCcc------HHHHHHhCCcHHHHHhhcCeeEE
Confidence 999999999999999999999999884 4777777788899999999963 1233445568899999997 557
Q ss_pred EeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 513 IVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 513 ~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
.+++..++..| ..++.+++...... ... -.+.+++++.+.|..|
T Consensus 171 ~lPpL~eR~edi~~l~~~~l~~~~~~----------------------~~~-~~~~~s~~a~~~L~~~------------ 215 (304)
T 1ojl_A 171 EMPSLRQRREDIPLLADHFLRRFAER----------------------NRK-VVKGFTPQAMDLLIHY------------ 215 (304)
T ss_dssp ECCCSGGGGGGHHHHHHHHHHHHHHH----------------------TTC-CCCCBCHHHHHHHHHC------------
T ss_pred eccCHHHhHhhHHHHHHHHHHHHHHH----------------------hcc-CccCCCHHHHHHHHcC------------
Confidence 77777765555 45666655432211 111 2346999999999887
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHH
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQI 671 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (726)
+||+|+|+|+++++.+...+. ...|+.+|+...+. .. ....+..... . .-+..+...|.+++
T Consensus 216 -------~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l~~~~~---~~---~~~~~~~l~~-~-~~~~~e~~~i~~~l 277 (304)
T 1ojl_A 216 -------DWPGNIRELENAIERAVVLLT---GEYISERELPLAIA---AT---PIKTEYSGEI-Q-PLVDVEKEVILAAL 277 (304)
T ss_dssp -------CCSSHHHHHHHHHHHHHHHCC---SSSBCGGGSCGGGC-------------CCSSC-C-CHHHHHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHHHHHHHhCC---CCcccHHhhhhhhc---cC---CCccCCCcch-h-hHHHHHHHHHHHHH
Confidence 699999999999998887664 56889888864431 00 0000000000 0 11222233455556
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 004862 672 KRRIPIGNQISERRLIDDLTRMGMNESIIRRALI 705 (726)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 705 (726)
++..++ ..+.|+.+||++.++.+.|+
T Consensus 278 ~~~~gn--------~~~aA~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 278 EKTGGN--------KTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp HTTTTC--------HHHHHHHHTSCHHHHHHHTC
T ss_pred HHcCCC--------HHHHHHHHCcCHHHHHHHHh
Confidence 643221 35668889999999998874
No 9
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=1.1e-21 Score=210.75 Aligned_cols=288 Identities=16% Similarity=0.218 Sum_probs=195.4
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
+.+++|++.+++.+..++...... -....|+||+||||||||++|+++++.....+.. ++++..
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~---------~~~~~~ 91 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKT---------TAAPMI 91 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE---------EEGGGC
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---------ecchhc
Confidence 346899999998887766532100 0122589999999999999999999887655432 111111
Q ss_pred ecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccc------eEEEeeCceEEEEecCCCCC
Q 004862 413 RDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAG------ITTVLNSRTSVLAAANPPSG 486 (726)
Q Consensus 413 ~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g------~~~~l~~~~~iiaa~Np~~g 486 (726)
.. .+.+ .......+++|++|||||+.++++.+..|+.+|+++.+.+..++ ....++ ++.+|+|||+.
T Consensus 92 ~~--~~~~--~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~-- 164 (338)
T 3pfi_A 92 EK--SGDL--AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRA-- 164 (338)
T ss_dssp CS--HHHH--HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCG--
T ss_pred cc--hhHH--HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCc--
Confidence 10 0111 01011256889999999999999999999999999876543221 111223 58999999952
Q ss_pred cCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCC
Q 004862 487 RYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHP 566 (726)
Q Consensus 487 ~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p 566 (726)
..+.++|++||+.++.+..++.++. . .+ ++++ ++. ...
T Consensus 165 -----------~~l~~~L~~R~~~~i~l~~~~~~e~-~----~i----------------------l~~~---~~~-~~~ 202 (338)
T 3pfi_A 165 -----------GMLSNPLRDRFGMQFRLEFYKDSEL-A----LI----------------------LQKA---ALK-LNK 202 (338)
T ss_dssp -----------GGSCHHHHTTCSEEEECCCCCHHHH-H----HH----------------------HHHH---HHH-TTC
T ss_pred -----------cccCHHHHhhcCEEeeCCCcCHHHH-H----HH----------------------HHHH---HHh-cCC
Confidence 1278899999999988877653321 1 11 1111 111 233
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhh
Q 004862 567 RLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAA 646 (726)
Q Consensus 567 ~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~ 646 (726)
.+++++.+.|... |++++|++.++++.+...|.+.....|+.+|+..++.....+
T Consensus 203 ~~~~~~~~~l~~~--------------------~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~----- 257 (338)
T 3pfi_A 203 TCEEKAALEIAKR--------------------SRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN----- 257 (338)
T ss_dssp EECHHHHHHHHHT--------------------TTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC-----
T ss_pred CCCHHHHHHHHHH--------------------HCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc-----
Confidence 5888888888763 899999999999999888988888999999999888653321
Q ss_pred hcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH-HHHHCCeEEEecCCeEEEec
Q 004862 647 RSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALI-IMHQRDEVEYKRERRVILRK 725 (726)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~g~~~~~~ 725 (726)
..++...+.. ++..+... .+..++...+ ++.+|+++.++++.++ .|.+.|+|..+..|+++|.+
T Consensus 258 ------~~~l~~~e~~----~l~~l~~~--~~~~~~~~~~---a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~ 322 (338)
T 3pfi_A 258 ------ELGFDAMDLR----YLELLTAA--KQKPIGLASI---AAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAK 322 (338)
T ss_dssp ------TTCCCHHHHH----HHHHHHHS--CSCCBCHHHH---HHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHH
T ss_pred ------ccCCCHHHHH----HHHHHHHh--cCCCchHHHH---HHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHH
Confidence 1122222222 33333333 2445666666 8889999999999999 88999999999999998754
No 10
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.86 E-value=5.6e-20 Score=195.92 Aligned_cols=288 Identities=17% Similarity=0.225 Sum_probs=191.0
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~~ 412 (726)
.+++|++.+++.+.-++...... -+...++||+||||||||++|+++++.+...+.. .+.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-------- 76 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-------- 76 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--------
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--------
Confidence 46889988887766555321000 0123689999999999999999999876654332 2111000
Q ss_pred ecCCCchh-hhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccc-----eEEEeeCceEEEEecCCCCC
Q 004862 413 RDGSSREF-YLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAG-----ITTVLNSRTSVLAAANPPSG 486 (726)
Q Consensus 413 ~~~~~~~~-~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g-----~~~~l~~~~~iiaa~Np~~g 486 (726)
.++. ..-.+ .+++++++||||++.+++..+..|+.+|+++.+.+.-.. .......++.+|+++|.+
T Consensus 77 ----~~~l~~~l~~--~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~-- 148 (324)
T 1hqc_A 77 ----PGDLAAILAN--SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP-- 148 (324)
T ss_dssp ----HHHHHHHHTT--TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC--
T ss_pred ----hHHHHHHHHH--hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc--
Confidence 0010 00011 146789999999999999999999999999876542111 111223478999999964
Q ss_pred cCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCC
Q 004862 487 RYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHP 566 (726)
Q Consensus 487 ~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p 566 (726)
..+.++|++||+.++.+..++.++ + .++ ++++ +.. ...
T Consensus 149 -----------~~~~~~l~~R~~~~i~l~~~~~~e----~-~~~----------------------l~~~---~~~-~~~ 186 (324)
T 1hqc_A 149 -----------GLITAPLLSRFGIVEHLEYYTPEE----L-AQG----------------------VMRD---ARL-LGV 186 (324)
T ss_dssp -----------SSCSCSTTTTCSCEEECCCCCHHH----H-HHH----------------------HHHH---HHT-TTC
T ss_pred -----------ccCCHHHHhcccEEEecCCCCHHH----H-HHH----------------------HHHH---HHh-cCC
Confidence 136778999998888777665322 1 111 1122 111 234
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhhhhh
Q 004862 567 RLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTMDAA 646 (726)
Q Consensus 567 ~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~~~~ 646 (726)
.+++++.+.|..+ +++++|.+.++++.+...|.+.....|+.+|+..++..+..+
T Consensus 187 ~~~~~~~~~l~~~--------------------~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~----- 241 (324)
T 1hqc_A 187 RITEEAALEIGRR--------------------SRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD----- 241 (324)
T ss_dssp CCCHHHHHHHHHH--------------------SCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC-----
T ss_pred CCCHHHHHHHHHH--------------------ccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc-----
Confidence 5889999888876 578999999999998888887778899999999887654211
Q ss_pred hcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH-HHHCCeEEEecCCeEEEec
Q 004862 647 RSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALII-MHQRDEVEYKRERRVILRK 725 (726)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~-l~~~g~i~~~~~g~~~~~~ 725 (726)
...++..++..+. ..++... +..++...+ |+.+|+++.++.+.+++ +.+.|+|..+..|+.++.+
T Consensus 242 ------~~~l~~~e~~~i~---~~~~~~~--g~~~~~~~~---a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~ 307 (324)
T 1hqc_A 242 ------ELGLEKRDREILE---VLILRFG--GGPVGLATL---ATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTEL 307 (324)
T ss_dssp ------TTCCCHHHHHHHH---HHHHHSC--SSCCCHHHH---HHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHH
T ss_pred ------ccCCCHHHHHHHH---HHHHHhc--CCCchHHHH---HHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHH
Confidence 1123333333332 2233221 234555555 78899999999999996 7999999999999998764
No 11
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.84 E-value=1.6e-20 Score=216.76 Aligned_cols=245 Identities=19% Similarity=0.241 Sum_probs=169.6
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE----EeCCCCCC------
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV----YTSGKGSS------ 403 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~----~~~g~~~~------ 403 (726)
..++|++.+++.+..++..| .++||+||||||||++|++++..+++.. ...+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i 106 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRI 106 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEE
T ss_pred ceEECchhhHhhccccccCC--------------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcE
Confidence 35789999999999999877 6899999999999999999999987542 11111100
Q ss_pred ------------------------------------------------------------cccccceeeecC------CC
Q 004862 404 ------------------------------------------------------------AAGLTASVIRDG------SS 417 (726)
Q Consensus 404 ------------------------------------------------------------~~gl~~~~~~~~------~~ 417 (726)
...++..+..++ .+
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 001111111110 01
Q ss_pred c-hhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccce--------EEEeeCceEEEEecCCCCCcC
Q 004862 418 R-EFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGI--------TTVLNSRTSVLAAANPPSGRY 488 (726)
Q Consensus 418 ~-~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~--------~~~l~~~~~iiaa~Np~~g~~ 488 (726)
+ ...+.+|.+..|++|+|||||++.|++..|+.|+++|+++.+.+...+. ....+.+++||+|+|+.
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~---- 262 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD---- 262 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH----
T ss_pred cccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH----
Confidence 1 1224678888999999999999999999999999999999987542110 34568899999999963
Q ss_pred CCccchhhhccCchhhhcccC---eeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhH-ccC
Q 004862 489 DDLKSAQDNIDLQTTILSRFD---LIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCR-LEC 564 (726)
Q Consensus 489 ~~~~~~~~~~~l~~~Ll~RFd---li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~-~~~ 564 (726)
....++++|++||+ +.+.+++.. +.......+++.. +...++ ...
T Consensus 263 -------~~~~l~~~l~~R~~v~~i~i~l~~~~--~~~~~~~~~~l~~----------------------~~~~~~~~~~ 311 (604)
T 3k1j_A 263 -------TVDKMHPALRSRIRGYGYEVYMRTTM--PDTIENRRKLVQF----------------------VAQEVKRDGK 311 (604)
T ss_dssp -------HHHHSCHHHHHHHHHHSEEEECCSEE--ECCHHHHHHHHHH----------------------HHHHHHHHCS
T ss_pred -------HHhhcCHHHHHHhhccceEeeccccc--cCCHHHHHHHHHH----------------------HHHHHhhccC
Confidence 11248999999998 344333222 1112233332221 111111 113
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 565 HPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 565 ~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
.|.++++|.+.|.++|..+ .+....++.++|++.+++|.|.++|++++++.|+.+|+.+|+..
T Consensus 312 ~~~ls~eAl~~Li~~~~r~----------~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKR----------AGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHT----------TCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhh----------hccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4679999999999987521 12223467899999999999999999999999999999999864
No 12
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.84 E-value=5.2e-21 Score=208.84 Aligned_cols=210 Identities=19% Similarity=0.264 Sum_probs=159.0
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee-------------ecCCCchhhhccCceeecCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI-------------RDGSSREFYLEGGAMVLADGG 433 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~-------------~~~~~~~~~~~~G~l~la~~g 433 (726)
+.+|||.|++||||+++|+++|..+++... ++..++|+.. +...+|.....+|.+..|++|
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~------~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~g 233 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKE------PFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGG 233 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTS------CEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTS
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCC------CeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCc
Confidence 378999999999999999999999876411 1111222111 111233333467888899999
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eee
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIF 512 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~ 512 (726)
++|||||+.|+++.|..|+++|+++++ .+.|.....+.++++|||||.. .........|.+.|++|++ +.+
T Consensus 234 tlfldei~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~rii~at~~~------l~~~~~~g~fr~dl~~rl~~~~i 305 (387)
T 1ny5_A 234 TLFLDEIGELSLEAQAKLLRVIESGKF--YRLGGRKEIEVNVRILAATNRN------IKELVKEGKFREDLYYRLGVIEI 305 (387)
T ss_dssp EEEEESGGGCCHHHHHHHHHHHHHSEE--CCBTCCSBEECCCEEEEEESSC------HHHHHHTTSSCHHHHHHHTTEEE
T ss_pred EEEEcChhhCCHHHHHHHHHHHhcCcE--EeCCCCceeeccEEEEEeCCCC------HHHHHHcCCccHHHHHhhcCCee
Confidence 999999999999999999999999995 4777777788999999999952 2345566778999999998 678
Q ss_pred EeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 513 IVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 513 ~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
.+|+..++..| ..++.|++..+..... . -.+.+++++.+.|..|
T Consensus 306 ~lPpLreR~~Di~~l~~~~l~~~~~~~~----------------------~-~~~~~~~~a~~~l~~~------------ 350 (387)
T 1ny5_A 306 EIPPLRERKEDIIPLANHFLKKFSRKYA----------------------K-EVEGFTKSAQELLLSY------------ 350 (387)
T ss_dssp ECCCGGGCHHHHHHHHHHHHHHHHHHTT----------------------C-CCCEECHHHHHHHHHS------------
T ss_pred cCCcchhccccHHHHHHHHHHHHHHHcC----------------------C-CCCCCCHHHHHHHHhC------------
Confidence 88888887666 6677777664332111 1 1235999999999987
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
+||+|+|+|+++++.|...+. ...|+.+|+...+
T Consensus 351 -------~wpGNvreL~~~i~~~~~~~~---~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 351 -------PWYGNVRELKNVIERAVLFSE---GKFIDRGELSCLV 384 (387)
T ss_dssp -------CCTTHHHHHHHHHHHHHHHCC---SSEECHHHHHHHC
T ss_pred -------CCCcHHHHHHHHHHHHHHhCC---CCcCcHHHCcHhh
Confidence 799999999999998887664 5689999987543
No 13
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.82 E-value=5.1e-20 Score=190.68 Aligned_cols=236 Identities=16% Similarity=0.148 Sum_probs=149.0
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc----EEeCCCCCCcccccc
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA----VYTSGKGSSAAGLTA 409 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~----~~~~g~~~~~~gl~~ 409 (726)
..++|+....+.++-.+.... +.+.++||+||||||||++|++++..+++. +++.....+. .+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-~~~~ 74 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLD 74 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-HHHH
T ss_pred ccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-hHHH
Confidence 346787766655543222110 112689999999999999999999988643 1111100000 0000
Q ss_pred e----eeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCC
Q 004862 410 S----VIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPS 485 (726)
Q Consensus 410 ~----~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~ 485 (726)
+ ..+...++......|.+..+++|++||||++.++++.|..|+++|+++.+ .+.|.....+.++++|+|+|+..
T Consensus 75 ~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~~ 152 (265)
T 2bjv_A 75 SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADL 152 (265)
T ss_dssp HHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSCH
T ss_pred HHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcCH
Confidence 0 00000111111234556668899999999999999999999999999985 46676666788899999999631
Q ss_pred CcCCCccchhhhccCchhhhcccC-eeeEeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHcc
Q 004862 486 GRYDDLKSAQDNIDLQTTILSRFD-LIFIVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLE 563 (726)
Q Consensus 486 g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~ 563 (726)
. .......+.++|++||+ +.+.+++..++..| ..++++++...... ....
T Consensus 153 ~------~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~----------------------~~~~ 204 (265)
T 2bjv_A 153 P------AMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE----------------------IKLP 204 (265)
T ss_dssp H------HHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH----------------------TTCS
T ss_pred H------HHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH----------------------hCCC
Confidence 1 22334568899999997 56777777665434 44555554432111 1111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 004862 564 CHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN 632 (726)
Q Consensus 564 ~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~ 632 (726)
..+.+++++.+.|..| .||+|+|+|+++++.+...+. ...|+.+|+.
T Consensus 205 ~~~~~~~~a~~~L~~~-------------------~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l~ 251 (265)
T 2bjv_A 205 LFPGFTERARETLLNY-------------------RWPGNIRELKNVVERSVYRHG---TSDYPLDDII 251 (265)
T ss_dssp SCCCBCHHHHHHHHHS-------------------CCTTHHHHHHHHHHHHHHHHC---CSSSCBCCCC
T ss_pred cccCcCHHHHHHHHhC-------------------CCCCCHHHHHHHHHHHHHhCC---CCcCcHHHcc
Confidence 2247999999999876 699999999999998877664 5578777764
No 14
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.81 E-value=5.1e-20 Score=199.38 Aligned_cols=195 Identities=18% Similarity=0.265 Sum_probs=148.4
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee-------------cCCCchhhhccCceeecCCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR-------------DGSSREFYLEGGAMVLADGG 433 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~-------------~~~~~~~~~~~G~l~la~~g 433 (726)
+.++|+.|++||||+.+|+++|..+++.. .+..++|+... ...+|.....+|.+..|++|
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~-------~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~g 224 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKG-------AFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQG 224 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCS-------CEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTS
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccC-------CcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCC
Confidence 37899999999999999999999887641 01122222211 11233333456778889999
Q ss_pred eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eee
Q 004862 434 VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIF 512 (726)
Q Consensus 434 vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~ 512 (726)
++|||||+.|+++.|..|+++|+++.+ .+.|.....+.++++|+|||. +.........|.++|++|+. +.+
T Consensus 225 tlfldei~~l~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~rii~at~~------~l~~~v~~g~fr~dL~~rl~~~~i 296 (368)
T 3dzd_A 225 TLFLDEVGELDQRVQAKLLRVLETGSF--TRLGGNQKIEVDIRVISATNK------NLEEEIKKGNFREDLYYRLSVFQI 296 (368)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHSEE--CCBTCCCBEECCCEEEEEESS------CHHHHHHTTSSCHHHHHHHTSEEE
T ss_pred eEEecChhhCCHHHHHHHHHHHHhCCc--ccCCCCcceeeeeEEEEecCC------CHHHHHHcCCccHHHHHHhCCeEE
Confidence 999999999999999999999999985 477777778899999999994 23345566779999999998 457
Q ss_pred EeccCCChhhh-HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 004862 513 IVKDIRMYNQD-KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQA 591 (726)
Q Consensus 513 ~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~ 591 (726)
.+|+..++..| ..++.|++........ .-.+.++++|.+.|..|
T Consensus 297 ~lPpLreR~~Di~~l~~~~l~~~~~~~~-----------------------~~~~~~~~~a~~~L~~~------------ 341 (368)
T 3dzd_A 297 YLPPLRERGKDVILLAEYFLKKFAKEYK-----------------------KNCFELSEETKEYLMKQ------------ 341 (368)
T ss_dssp ECCCGGGSTTHHHHHHHHHHHHHHHHTT-----------------------CCCCCBCHHHHHHHHTC------------
T ss_pred eCCChhhchhhHHHHHHHHHHHHHHHcC-----------------------CCCCCcCHHHHHHHHhC------------
Confidence 88888877666 5677777664332211 12346999999999987
Q ss_pred cccCCCCCccCChhHHHHHHHHHHHHH
Q 004862 592 NETGEAAPIPITVRQLEAIVRLSEALA 618 (726)
Q Consensus 592 ~~~~~~~~~~~t~R~L~~lirla~a~A 618 (726)
+||+|+|+|+++++.+...+
T Consensus 342 -------~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 -------EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp -------CCTTHHHHHHHHHHHHHHTC
T ss_pred -------CCCcHHHHHHHHHHHHHHhC
Confidence 79999999999999887654
No 15
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.77 E-value=2.3e-17 Score=176.69 Aligned_cols=297 Identities=17% Similarity=0.203 Sum_probs=188.8
Q ss_pred hHHHHHHhhcC----CccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE-eC
Q 004862 324 AYKTVCSKIAP----SIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY-TS 398 (726)
Q Consensus 324 ~~~~l~~si~p----~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~-~~ 398 (726)
.|+.++..+-| .++|++.++..+-+++-.|... | ....|++|+||||+|||+|+++++......+. ++
T Consensus 11 ~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~----~---~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~s 83 (334)
T 1in4_A 11 VYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMR----G---EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83 (334)
T ss_dssp ------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH----T---CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhc----C---CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 45555566655 3679999999888877543110 0 11157999999999999999999988754332 22
Q ss_pred CCCCCcccccceeeecCCCchhh-hccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeee--cc---ceEEEee
Q 004862 399 GKGSSAAGLTASVIRDGSSREFY-LEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIA--KA---GITTVLN 472 (726)
Q Consensus 399 g~~~~~~gl~~~~~~~~~~~~~~-~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~--~~---g~~~~l~ 472 (726)
|..... ..... ... .+....|+||||++.+.+..++.|+.+|+...+.+. .. .......
T Consensus 84 g~~~~~------------~~~l~~~~~---~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 84 GPVLVK------------QGDMAAILT---SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp TTTCCS------------HHHHHHHHH---HCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------
T ss_pred chHhcC------------HHHHHHHHH---HccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 211100 00000 000 123467999999999999889999999987543211 00 0011122
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
..+.+++++|++ ..+++++.+||.+.+.+..... +.
T Consensus 149 ~~~~li~at~~~-------------~~Ls~~l~sR~~l~~~Ld~~~~-------------------------------~~ 184 (334)
T 1in4_A 149 QPFTLVGATTRS-------------GLLSSPLRSRFGIILELDFYTV-------------------------------KE 184 (334)
T ss_dssp CCCEEEEEESCG-------------GGSCHHHHTTCSEEEECCCCCH-------------------------------HH
T ss_pred CCeEEEEecCCc-------------ccCCHHHHHhcCceeeCCCCCH-------------------------------HH
Confidence 357777877743 2478999999998876654432 12
Q ss_pred HHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 004862 553 LKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVN 632 (726)
Q Consensus 553 L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~ 632 (726)
+..++..........+++++...|.+. ..+++|.+.++++.+...|.+..+..|+.+++.
T Consensus 185 l~~iL~~~~~~~~~~~~~~~~~~ia~~--------------------~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~ 244 (334)
T 1in4_A 185 LKEIIKRAASLMDVEIEDAAAEMIAKR--------------------SRGTPRIAIRLTKRVRDMLTVVKADRINTDIVL 244 (334)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHT--------------------STTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHh--------------------cCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 222222211112335788888777653 458999999999999999988888899999999
Q ss_pred HHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH-HHHHCC
Q 004862 633 EAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALI-IMHQRD 711 (726)
Q Consensus 633 ~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g 711 (726)
+|+..+... ..+++.... .+++++-+.+. ++++++.++ +...|.+..++++.++ +|.+.|
T Consensus 245 ~al~~~~~~-----------~~~l~~~~~----~~l~~~~~~~~-~~~~~~~~l---~~~~~~~~~t~~~~~~~~l~~~g 305 (334)
T 1in4_A 245 KTMEVLNID-----------DEGLDEFDR----KILKTIIEIYR-GGPVGLNAL---AASLGVEADTLSEVYEPYLLQAG 305 (334)
T ss_dssp HHHHHHTCC-----------TTCCCHHHH----HHHHHHHHHST-TCCBCHHHH---HHHHTSCHHHHHHHTHHHHHHTT
T ss_pred HHHHHhCCC-----------cCCCCHHHH----HHHHHHHHHhC-CCcchHHHH---HHHhCCCcchHHHHHHHHHHHcC
Confidence 999765421 122333222 23444443332 456788877 5667889999999999 899999
Q ss_pred eEEEecCCeEEEec
Q 004862 712 EVEYKRERRVILRK 725 (726)
Q Consensus 712 ~i~~~~~g~~~~~~ 725 (726)
+|..+.+||++|..
T Consensus 306 ~i~~~~~gr~~~~~ 319 (334)
T 1in4_A 306 FLARTPRGRIVTEK 319 (334)
T ss_dssp SEEEETTEEEECHH
T ss_pred CeecccccHHhhHH
Confidence 99999999998864
No 16
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=3.1e-18 Score=180.94 Aligned_cols=269 Identities=17% Similarity=0.217 Sum_probs=161.1
Q ss_pred HHHHHHhhcCCccCchhHHHHHHHHHhCCCcc-cCCCCc-cccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCC
Q 004862 325 YKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRK-NLPDGV-KLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKG 401 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~~~k~aill~L~~~~~~-~~~~g~-~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~ 401 (726)
.+.+.+++.+.|+|++.+++++..++.....+ ....+. .-+...++||+||||||||++|+++++.+...++. ....
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~ 85 (310)
T 1ofh_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (310)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchh
Confidence 35677778899999999999998887642100 000000 01223689999999999999999999887654432 1111
Q ss_pred CCcccccceeeecCCCchhhhccCceeec-CCCeEEecccCcCCHHH------------HHHHHHHHhcceEeeeccceE
Q 004862 402 SSAAGLTASVIRDGSSREFYLEGGAMVLA-DGGVVCIDEFDKMRPED------------RVAIHEAMEQQTISIAKAGIT 468 (726)
Q Consensus 402 ~~~~gl~~~~~~~~~~~~~~~~~G~l~la-~~gvl~iDEi~~~~~~~------------~~~L~~~me~~~i~i~~~g~~ 468 (726)
....+.............+...+|.+..+ .++|+||||++.++++. +..|+++||.+.+.. +.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~-- 162 (310)
T 1ofh_A 86 FTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG-- 162 (310)
T ss_dssp GSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE--
T ss_pred cccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec-ccc--
Confidence 00001110000000000011123344333 47899999999998765 889999999887653 233
Q ss_pred EEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccC
Q 004862 469 TVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSK 548 (726)
Q Consensus 469 ~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 548 (726)
..-..++.+|+++|+... ....+.++|++||++++.++++..++ -..+ +..+.
T Consensus 163 ~~~~~~~~~i~~~~~~~~---------~~~~l~~~l~~R~~~~i~~~~~~~~~-~~~i----l~~~~------------- 215 (310)
T 1ofh_A 163 MVKTDHILFIASGAFQVA---------RPSDLIPELQGRLPIRVELTALSAAD-FERI----LTEPH------------- 215 (310)
T ss_dssp EEECTTCEEEEEECCSSS---------CGGGSCHHHHHTCCEEEECCCCCHHH-HHHH----HHSST-------------
T ss_pred cccCCcEEEEEcCCcccC---------CcccCCHHHHhhCCceEEcCCcCHHH-HHHH----HHhhH-------------
Confidence 233557889999874211 11258899999999888887776432 1222 21100
Q ss_pred CHHHHHHHHHHhH-ccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCC---
Q 004862 549 EENWLKRYIQYCR-LECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSH--- 624 (726)
Q Consensus 549 ~~~~L~~yi~~a~-~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~--- 624 (726)
..++++|...++ ....+.+++++.+.|.++....+.. ...+++|+|.++++.+.+.+......
T Consensus 216 -~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~------------~~~g~~R~l~~~l~~~~~~~~~~~~~~~~ 282 (310)
T 1ofh_A 216 -ASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK------------TENIGARRLHTVMERLMDKISFSASDMNG 282 (310)
T ss_dssp -TCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH------------SCCCTTHHHHHHHHHHSHHHHHHGGGCTT
T ss_pred -HHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc------------ccccCcHHHHHHHHHHHHhhhcCCccccC
Confidence 012333333332 2234569999999999885322211 12489999999999876544322211
Q ss_pred ---cccHHHHHHHHH
Q 004862 625 ---VATENEVNEAVR 636 (726)
Q Consensus 625 ---~V~~~Dv~~ai~ 636 (726)
.|+.+|+.+|+.
T Consensus 283 ~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 283 QTVNIDAAYVADALG 297 (310)
T ss_dssp CEEEECHHHHHHHTC
T ss_pred CEEEEeeHHHHHHHH
Confidence 499999998874
No 17
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.75 E-value=2.9e-18 Score=186.78 Aligned_cols=272 Identities=17% Similarity=0.164 Sum_probs=148.9
Q ss_pred HHHHHhhcCCccCchhHHHHHHHHHhCCCcccC---------------C---CCccccCcceEEEECCCchhHHHHHHHH
Q 004862 326 KTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNL---------------P---DGVKLRGDVNVLLLGDPSTAKSQFLKFV 387 (726)
Q Consensus 326 ~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~---------------~---~g~~~r~~~~vLL~G~pGtGKt~la~~i 387 (726)
..+.+.+...|+|++.+|+++..++........ + .+...+...|+||+||||||||++|+++
T Consensus 13 ~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHH
Confidence 345666777899999999999888742110000 0 0001134478999999999999999999
Q ss_pred HHhCCCcEEeC-CCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHH--------------HHHHHH
Q 004862 388 EKTAPIAVYTS-GKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPE--------------DRVAIH 452 (726)
Q Consensus 388 ~~~~~~~~~~~-g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~--------------~~~~L~ 452 (726)
++.+...++.. ....+..++.+..........+....|.+..+.+|++||||+++++.. .++.|+
T Consensus 93 a~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll 172 (376)
T 1um8_A 93 AKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALL 172 (376)
T ss_dssp HHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHH
T ss_pred HHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHH
Confidence 99886554421 111111111111000000011122334455678899999999999988 899999
Q ss_pred HHHhcceEeeeccceEEEeeC--------ceEEEEecCCC------CCcCC-------Cc-c------c--------hhh
Q 004862 453 EAMEQQTISIAKAGITTVLNS--------RTSVLAAANPP------SGRYD-------DL-K------S--------AQD 496 (726)
Q Consensus 453 ~~me~~~i~i~~~g~~~~l~~--------~~~iiaa~Np~------~g~~~-------~~-~------~--------~~~ 496 (726)
.+||.+.+.+...|.....+. ++.+|+|+|.. ..++. .. . . ...
T Consensus 173 ~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 252 (376)
T 1um8_A 173 KIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLV 252 (376)
T ss_dssp HHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHH
T ss_pred HHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHh
Confidence 999998877766666554443 44556665521 01110 00 0 0 001
Q ss_pred hccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhH-ccCCCCCCHHHHHH
Q 004862 497 NIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCR-LECHPRLSESASAK 575 (726)
Q Consensus 497 ~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~-~~~~p~ls~ea~~~ 575 (726)
...+.++|++||+.++.+++...++ -..+..+.+ ..++++|....+ ......+++++.+.
T Consensus 253 ~~~~~p~l~~R~~~~i~~~~l~~~~-l~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~ 313 (376)
T 1um8_A 253 TYGLIPELIGRLPVLSTLDSISLEA-MVDILQKPK------------------NALIKQYQQLFKMDEVDLIFEEEAIKE 313 (376)
T ss_dssp HTTCCHHHHTTCCEEEECCCCCHHH-HHHHHHSST------------------TCHHHHHHHHHHTTTCEEEECHHHHHH
T ss_pred hcCCChHHhcCCCceeeccCCCHHH-HHHHHhhhH------------------HHHHHHHHHHHhhcCceEEECHHHHHH
Confidence 3457899999999988888776432 122221100 011223322211 11344699999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCC------cccHHHHHH
Q 004862 576 LRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSH------VATENEVNE 633 (726)
Q Consensus 576 l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~------~V~~~Dv~~ 633 (726)
|..+.- ++++++|+|.+++..+...+-.+... .|+.+|+..
T Consensus 314 l~~~~~-----------------~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 314 IAQLAL-----------------ERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLK 360 (376)
T ss_dssp HHHHHH-----------------HTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTT
T ss_pred HHHHhc-----------------ccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcC
Confidence 988721 13489999999998776654333221 478777764
No 18
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.72 E-value=2.3e-18 Score=186.73 Aligned_cols=257 Identities=13% Similarity=0.165 Sum_probs=138.5
Q ss_pred HHHhhcCCccCchhHHHHHHHHHhCCCcccC---CCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCC-CC
Q 004862 328 VCSKIAPSIFGHDDVKKAVSCLLFGGSRKNL---PDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKG-SS 403 (726)
Q Consensus 328 l~~si~p~I~G~~~~k~aill~L~~~~~~~~---~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~-~~ 403 (726)
+...+...|+|++.+|+.+..++........ .....-....|+||+||||||||++|+++++.+...++..... ..
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 4444555699999999998887742110000 0000112346899999999999999999999986655421100 00
Q ss_pred cccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHH--------------HHHHHHHHHhcceEeeeccceEE
Q 004862 404 AAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPE--------------DRVAIHEAMEQQTISIAKAGITT 469 (726)
Q Consensus 404 ~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~~~g~~~ 469 (726)
..++.+.......+..+...++.+..+.+||+||||++++++. .|+.|+++||...+.+...+...
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~ 168 (363)
T 3hws_A 89 EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRK 168 (363)
T ss_dssp TCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-----------
T ss_pred ccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccc
Confidence 0001000000000111222234445567899999999999887 89999999995444443333332
Q ss_pred EeeCceEEEEecCCCC---CcCCCcc-----------------------------chh--------hhccCchhhhcccC
Q 004862 470 VLNSRTSVLAAANPPS---GRYDDLK-----------------------------SAQ--------DNIDLQTTILSRFD 509 (726)
Q Consensus 470 ~l~~~~~iiaa~Np~~---g~~~~~~-----------------------------~~~--------~~~~l~~~Ll~RFd 509 (726)
.-..++.+|+|+|..+ |.+.... .+. ....|.++|++|||
T Consensus 169 ~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~ 248 (363)
T 3hws_A 169 HPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 248 (363)
T ss_dssp -----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCC
T ss_pred cCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccC
Confidence 2222344444444310 1111000 011 11128899999999
Q ss_pred eeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhH-ccCCCCCCHHHHHHHHHH-HHHHHHHH
Q 004862 510 LIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCR-LECHPRLSESASAKLRDQ-YVQIRKDM 587 (726)
Q Consensus 510 li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~-~~~~p~ls~ea~~~l~~~-y~~~R~~~ 587 (726)
.++.+.++..++ -..|... .. ..++++|..... ..+...+++++.+.|.++ |
T Consensus 249 ~~~~~~pl~~~~-~~~I~~~----~~--------------~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~------- 302 (363)
T 3hws_A 249 VVATLNELSEEA-LIQILKE----PK--------------NALTKQYQALFNLEGVDLEFRDEALDAIAKKAM------- 302 (363)
T ss_dssp EEEECCCCCHHH-HHHHHHS----ST--------------TCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH-------
T ss_pred eeeecCCCCHHH-HHHHHHH----HH--------------HHHHHHHHHHHHhcCceEEECHHHHHHHHHhhc-------
Confidence 988776665322 2222221 00 012333333222 124456899999999874 3
Q ss_pred hhhhcccCCCCCccCChhHHHHHHHHHHHHHhhh
Q 004862 588 RRQANETGEAAPIPITVRQLEAIVRLSEALAKMK 621 (726)
Q Consensus 588 ~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~ 621 (726)
+|++++|+|+++++.+...+..+
T Consensus 303 -----------~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 303 -----------ARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp -----------HTTCTTTTHHHHHHHHHHHHHHS
T ss_pred -----------CCccCchHHHHHHHHHHHHHHHh
Confidence 58999999999999776555433
No 19
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.70 E-value=6.1e-17 Score=171.29 Aligned_cols=246 Identities=15% Similarity=0.143 Sum_probs=150.2
Q ss_pred HHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc---EE-eCCC
Q 004862 325 YKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA---VY-TSGK 400 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~---~~-~~g~ 400 (726)
+..+.+.+...|+|++.+++.+..++..+... .. ...+...++||+||||||||++|++++..+.+. +. ....
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~-~~--~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRAVADAIRRARAG-LK--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHT-CS--CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC-CC--CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 34566778889999999999888777644110 00 011233589999999999999999999887432 21 1100
Q ss_pred CCCcccccceeeecCCCchhhhc-----cCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 401 GSSAAGLTASVIRDGSSREFYLE-----GGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 401 ~~~~~gl~~~~~~~~~~~~~~~~-----~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
..............+ .+..... .+++..+.+|++||||+++++++.+..|+++|+++.+... .+....+ .++
T Consensus 85 ~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~-~~~ 161 (311)
T 4fcw_A 85 EYMEKHAVSRLIGAP-PGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDS-HGRTVDF-RNT 161 (311)
T ss_dssp GCCSTTHHHHHHCCC-TTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECT-TSCEEEC-TTE
T ss_pred cccccccHHHhcCCC-CccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcC-CCCEEEC-CCc
Confidence 000000000000000 0000111 1223345678999999999999999999999999987632 2332222 356
Q ss_pred EEEEecCCCC-------CcCCCccchhh------hccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccc
Q 004862 476 SVLAAANPPS-------GRYDDLKSAQD------NIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSA 542 (726)
Q Consensus 476 ~iiaa~Np~~-------g~~~~~~~~~~------~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~ 542 (726)
.+|+|+|+.. +.......+.+ ...+.++|++||+.++.+.++. .+.-..|..+++......
T Consensus 162 iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~-~~~~~~i~~~~l~~~~~~----- 235 (311)
T 4fcw_A 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT-KEQIRQIVEIQMSYLRAR----- 235 (311)
T ss_dssp EEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCC-HHHHHHHHHHHTHHHHHH-----
T ss_pred EEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCC-HHHHHHHHHHHHHHHHHH-----
Confidence 6999999721 11111112222 3468899999999888776655 333455555554432111
Q ss_pred cccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCc--cCChhHHHHHHHHHHHH
Q 004862 543 DSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPI--PITVRQLEAIVRLSEAL 617 (726)
Q Consensus 543 ~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~--~~t~R~L~~lirla~a~ 617 (726)
+......+.+++++.+.|.++ .| |+++|+|+++++.+...
T Consensus 236 ----------------~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 236 ----------------LAEKRISLELTEAAKDFLAER-------------------GYDPVFGARPLRRVIQRELET 277 (311)
T ss_dssp ----------------HHTTTCEEEECHHHHHHHHHH-------------------SCBTTTBTTTHHHHHHHHTHH
T ss_pred ----------------HHhCCcEEEeCHHHHHHHHHh-------------------CCCccCCchhHHHHHHHHHHH
Confidence 111123457999999999987 57 89999999999876543
No 20
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.64 E-value=7.3e-16 Score=162.88 Aligned_cols=242 Identities=16% Similarity=0.090 Sum_probs=141.9
Q ss_pred HHHHHHhhcCCccCchhHHHHHHHHHhCCC--cccCCCCc-cccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCC
Q 004862 325 YKTVCSKIAPSIFGHDDVKKAVSCLLFGGS--RKNLPDGV-KLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKG 401 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~~~k~aill~L~~~~--~~~~~~g~-~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~ 401 (726)
++.+...+..+|+|++.+|+.+.-.+.... ......|. ..++..|+||+||||||||++|+++++.+....+.. .
T Consensus 22 ~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~--~ 99 (309)
T 3syl_A 22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR--K 99 (309)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS--S
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC--C
Confidence 355666677789999999998763332100 00000000 012346899999999999999999887653210000 0
Q ss_pred CCcccccceeeecCCCchh-hhccCceeecCCCeEEecccCcC---------CHHHHHHHHHHHhcceEeeeccceEEEe
Q 004862 402 SSAAGLTASVIRDGSSREF-YLEGGAMVLADGGVVCIDEFDKM---------RPEDRVAIHEAMEQQTISIAKAGITTVL 471 (726)
Q Consensus 402 ~~~~gl~~~~~~~~~~~~~-~~~~G~l~la~~gvl~iDEi~~~---------~~~~~~~L~~~me~~~i~i~~~g~~~~l 471 (726)
.....+++........+.. ....+.+..+.++++||||++.+ +...+..|+.+|+++.
T Consensus 100 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~------------ 167 (309)
T 3syl_A 100 GHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR------------ 167 (309)
T ss_dssp CCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT------------
T ss_pred CcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC------------
Confidence 0000011110000000100 01123344567899999999977 8888899999999652
Q ss_pred eCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHH
Q 004862 472 NSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEEN 551 (726)
Q Consensus 472 ~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 551 (726)
.++.+|+++|+. .......+.++|.+||+.++.++++..++ -..|..+.+..
T Consensus 168 -~~~~~i~~~~~~--------~~~~~~~~~~~l~~R~~~~i~~~~~~~~~-~~~il~~~l~~------------------ 219 (309)
T 3syl_A 168 -DDLVVILAGYAD--------RMENFFQSNPGFRSRIAHHIEFPDYSDEE-LFEIAGHMLDD------------------ 219 (309)
T ss_dssp -TTCEEEEEECHH--------HHHHHHHHSTTHHHHEEEEEEECCCCHHH-HHHHHHHHHHH------------------
T ss_pred -CCEEEEEeCChH--------HHHHHHhhCHHHHHhCCeEEEcCCcCHHH-HHHHHHHHHHH------------------
Confidence 467899999853 11122235689999999888887766322 22222222221
Q ss_pred HHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhh----CCCccc
Q 004862 552 WLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMK----LSHVAT 627 (726)
Q Consensus 552 ~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~----~~~~V~ 627 (726)
....+++++.+.+..+....+ ...|+++.|++.++++.+...+..+ ....++
T Consensus 220 ------------~~~~~~~~~~~~l~~~~~~~~------------~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~ 275 (309)
T 3syl_A 220 ------------QNYQMTPEAETALRAYIGLRR------------NQPHFANARSIRNALDRARLRQANRLFTASSGPLD 275 (309)
T ss_dssp ------------TTCEECHHHHHHHHHHHHHHT------------TSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEE
T ss_pred ------------cCCCCCHHHHHHHHHHHHHhc------------cCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 223588888888888754332 1369999999999999887644333 234566
Q ss_pred HHHHH
Q 004862 628 ENEVN 632 (726)
Q Consensus 628 ~~Dv~ 632 (726)
.+|+.
T Consensus 276 ~~~l~ 280 (309)
T 3syl_A 276 ARALS 280 (309)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 21
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=4e-16 Score=185.11 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=141.6
Q ss_pred HHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccc
Q 004862 328 VCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGL 407 (726)
Q Consensus 328 l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl 407 (726)
+.+.+...|+|++.+++.+.-++....... . ...+...++||+||||||||++|++++..+.+. .....-+
T Consensus 485 l~~~l~~~viGq~~a~~~l~~~i~~~~~~~-~--~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~------~~~~i~i 555 (758)
T 3pxi_A 485 MENILHSRVIGQDEAVVAVAKAVRRARAGL-K--DPKRPIGSFIFLGPTGVGKTELARALAESIFGD------EESMIRI 555 (758)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTTC-S--CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC------TTCEEEE
T ss_pred HHHHHhCcCcChHHHHHHHHHHHHHHHccc-C--CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC------CcceEEE
Confidence 344566789999998887776664321000 0 011222389999999999999999999886321 0011112
Q ss_pred cceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCc
Q 004862 408 TASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGR 487 (726)
Q Consensus 408 ~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~ 487 (726)
.++...+.....-..-.+++..+.++|+|||||++++++.++.|+++|+++.++. .+.......++.+|+|||.+...
T Consensus 556 ~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~--~~g~~~~~~~~~iI~ttn~~~~~ 633 (758)
T 3pxi_A 556 DMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTD--SKGRTVDFRNTILIMTSNVGASE 633 (758)
T ss_dssp EGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTC
T ss_pred echhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEc--CCCCEeccCCeEEEEeCCCChhh
Confidence 2221111100000000122234567899999999999999999999999998653 34444456789999999964322
Q ss_pred CCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCC
Q 004862 488 YDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPR 567 (726)
Q Consensus 488 ~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ 567 (726)
.+... ......|+++|++|||.++.++++.. +.-..|..+.+..... + +........
T Consensus 634 ~~~~~-~~~~~~f~p~l~~Rl~~~i~~~~l~~-~~~~~i~~~~l~~~~~------------------~---~~~~~~~~~ 690 (758)
T 3pxi_A 634 KDKVM-GELKRAFRPEFINRIDEIIVFHSLEK-KHLTEIVSLMSDQLTK------------------R---LKEQDLSIE 690 (758)
T ss_dssp CHHHH-HHHHHHSCHHHHTTSSEEEECC--CH-HHHHHHHHHHHHHHHH------------------H---HHTTTCEEE
T ss_pred HHHHH-HHHHhhCCHHHHhhCCeEEecCCCCH-HHHHHHHHHHHHHHHH------------------H---HHhCCCeEE
Confidence 11110 11122388999999999888777663 2234444444432211 1 111124457
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHH
Q 004862 568 LSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLS 614 (726)
Q Consensus 568 ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla 614 (726)
+++++.+.|.+. ..+|++++|+|+++|+.+
T Consensus 691 ~~~~a~~~l~~~-----------------~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 691 LTDAAKAKVAEE-----------------GVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp ECHHHHHHHHGG-----------------GCCTTTTTTTHHHHHHHH
T ss_pred ECHHHHHHHHHh-----------------CCCCCCCChHHHHHHHHH
Confidence 999999999753 017999999999999854
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.62 E-value=1.6e-15 Score=167.86 Aligned_cols=212 Identities=14% Similarity=0.215 Sum_probs=133.1
Q ss_pred cCCccCchhHH---HHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCccccc
Q 004862 333 APSIFGHDDVK---KAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLT 408 (726)
Q Consensus 333 ~p~I~G~~~~k---~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~ 408 (726)
..+++|++.+. +.+..++..+.. .++||+||||||||++|+++++.+...+.. +......
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~------------~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~---- 88 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHL------------HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGV---- 88 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCC------------CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCH----
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCC------------cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCH----
Confidence 34689999988 677776665511 589999999999999999999998776542 1111100
Q ss_pred ceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcC
Q 004862 409 ASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRY 488 (726)
Q Consensus 409 ~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~ 488 (726)
..++. .+.........+.++++||||++.++...|+.|+..||++. +.+|++++..
T Consensus 89 -~~ir~----~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~---------------v~lI~att~n---- 144 (447)
T 3pvs_A 89 -KEIRE----AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT---------------ITFIGATTEN---- 144 (447)
T ss_dssp -HHHHH----HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS---------------CEEEEEESSC----
T ss_pred -HHHHH----HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc---------------eEEEecCCCC----
Confidence 00000 00000000113467899999999999999999999999764 4567666421
Q ss_pred CCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCC
Q 004862 489 DDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRL 568 (726)
Q Consensus 489 ~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~l 568 (726)
....+.++|++||.+ +.+.+++ .+.-..+..+.+........ .-...+
T Consensus 145 -------~~~~l~~aL~sR~~v-~~l~~l~-~edi~~il~~~l~~~~~~~~-----------------------~~~~~i 192 (447)
T 3pvs_A 145 -------PSFELNSALLSRARV-YLLKSLS-TEDIEQVLTQAMEDKTRGYG-----------------------GQDIVL 192 (447)
T ss_dssp -------GGGSSCHHHHTTEEE-EECCCCC-HHHHHHHHHHHHHCTTTSST-----------------------TSSEEC
T ss_pred -------cccccCHHHhCceeE-EeeCCcC-HHHHHHHHHHHHHHHhhhhc-----------------------cccCcC
Confidence 123578999999984 4454444 22223333333221110000 012358
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhh--CCCcccHHHHHHHHH
Q 004862 569 SESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMK--LSHVATENEVNEAVR 636 (726)
Q Consensus 569 s~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~--~~~~V~~~Dv~~ai~ 636 (726)
++++.+.|..+ |++++|++.++++.+...|... ....|+.+|+.+++.
T Consensus 193 ~~~al~~L~~~--------------------~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 193 PDETRRAIAEL--------------------VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CHHHHHHHHHH--------------------HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CHHHHHHHHHH--------------------CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 99999999886 6799999999999998887644 456899999998875
No 23
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.61 E-value=6.9e-16 Score=175.41 Aligned_cols=241 Identities=18% Similarity=0.170 Sum_probs=139.3
Q ss_pred HHhhcCCccCchhHHHHHHHHHhCC-CcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCC-CCcc
Q 004862 329 CSKIAPSIFGHDDVKKAVSCLLFGG-SRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKG-SSAA 405 (726)
Q Consensus 329 ~~si~p~I~G~~~~k~aill~L~~~-~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~-~~~~ 405 (726)
...+..+++|++.+|+.+.-.+.-. .... . ...++||+||||||||++|++++..+...... ...+ ....
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 3345566999999998874333211 0000 1 12689999999999999999999988765442 1111 0100
Q ss_pred cccceeeecCCCchhhhccCce----e--ecCCCeEEecccCcCCHHH----HHHHHHHHhcceE-eeeccceEEEee-C
Q 004862 406 GLTASVIRDGSSREFYLEGGAM----V--LADGGVVCIDEFDKMRPED----RVAIHEAMEQQTI-SIAKAGITTVLN-S 473 (726)
Q Consensus 406 gl~~~~~~~~~~~~~~~~~G~l----~--la~~gvl~iDEi~~~~~~~----~~~L~~~me~~~i-~i~~~g~~~~l~-~ 473 (726)
.+.... + ......+|.+ . ...++|+||||+++++++. ++.|+++|+.+.. .+...+.....+ .
T Consensus 149 ~~~g~~-~----~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 149 EIRGHR-R----TYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp --------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred hhhhHH-H----HHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 111000 0 0000111211 1 1256799999999999884 4889999975432 122222222222 5
Q ss_pred ceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHH-HHHHhhhcccccccccccCCHHH
Q 004862 474 RTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASH-IIKIHASADAVSADSKVSKEENW 552 (726)
Q Consensus 474 ~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~-il~~~~~~~~~~~~~~~~~~~~~ 552 (726)
++.+|+|+|++. .++++|++||++ +.++.+. .+.+..|..+ ++..
T Consensus 224 ~v~iI~ttN~~~-------------~l~~aL~~R~~v-i~~~~~~-~~e~~~Il~~~l~~~------------------- 269 (543)
T 3m6a_A 224 KVLFIATANNLA-------------TIPGPLRDRMEI-INIAGYT-EIEKLEIVKDHLLPK------------------- 269 (543)
T ss_dssp SCEEEEECSSTT-------------TSCHHHHHHEEE-EECCCCC-HHHHHHHHHHTHHHH-------------------
T ss_pred ceEEEeccCccc-------------cCCHHHHhhcce-eeeCCCC-HHHHHHHHHHHHHHH-------------------
Confidence 789999999752 488999999974 4555554 3334444332 2221
Q ss_pred HHHHHHHhHc-cCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhh------CCCc
Q 004862 553 LKRYIQYCRL-ECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMK------LSHV 625 (726)
Q Consensus 553 L~~yi~~a~~-~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~------~~~~ 625 (726)
+...... .-...+++++...|...| .|+.++|+|++.++.+...|... ..-.
T Consensus 270 ---~~~~~~~~~~~i~i~~~~l~~l~~~~------------------~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~ 328 (543)
T 3m6a_A 270 ---QIKEHGLKKSNLQLRDQAILDIIRYY------------------TREAGVRSLERQLAAICRKAAKAIVAEERKRIT 328 (543)
T ss_dssp ---HHHHTTCCGGGCEECHHHHHHHHHHH------------------CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCE
T ss_pred ---HHHHcCCCcccccCCHHHHHHHHHhC------------------ChhhchhHHHHHHHHHHHHHHHHHHhcCCccee
Confidence 1111100 012257899998887765 68999999999988666555433 3447
Q ss_pred ccHHHHHHHHH
Q 004862 626 ATENEVNEAVR 636 (726)
Q Consensus 626 V~~~Dv~~ai~ 636 (726)
|+.+|+.+++.
T Consensus 329 It~~~l~~~Lg 339 (543)
T 3m6a_A 329 VTEKNLQDFIG 339 (543)
T ss_dssp ECTTTTHHHHC
T ss_pred cCHHHHHHHhC
Confidence 99999999874
No 24
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=1e-14 Score=173.25 Aligned_cols=237 Identities=14% Similarity=0.153 Sum_probs=149.1
Q ss_pred HHHHHHhhcCCccCchhHHHHHHHHHh----CCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-C-
Q 004862 325 YKTVCSKIAPSIFGHDDVKKAVSCLLF----GGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-S- 398 (726)
Q Consensus 325 ~~~l~~si~p~I~G~~~~k~aill~L~----~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~- 398 (726)
+..+.+.+...|+|++.+++.+.-++. |... ..+...|+||+||||||||++|++++..++..+.. .
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~-------~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~ 521 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGH-------EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSC-------TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCC-------CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEec
Confidence 455677788999999998876655443 2211 11223489999999999999999999988654432 1
Q ss_pred CCCC---CcccccceeeecCCCchhhh-----ccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEE
Q 004862 399 GKGS---SAAGLTASVIRDGSSREFYL-----EGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTV 470 (726)
Q Consensus 399 g~~~---~~~gl~~~~~~~~~~~~~~~-----~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~ 470 (726)
.... +...+.++ + .+.... -.+++..++++|+|||||++++++.++.|+++||++.++.. .|....
T Consensus 522 s~~~~~~~~~~l~g~----~-~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~-~g~~~~ 595 (758)
T 1r6b_X 522 SEYMERHTVSRLIGA----P-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN-NGRKAD 595 (758)
T ss_dssp GGCSSSSCCSSSCCC----C-SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TTEEEE
T ss_pred hhhcchhhHhhhcCC----C-CCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC-CCCEEe
Confidence 1000 00111111 0 010111 12334456789999999999999999999999999998753 355555
Q ss_pred eeCceEEEEecCCCCCc--------CCCc--cchhh--hccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcc
Q 004862 471 LNSRTSVLAAANPPSGR--------YDDL--KSAQD--NIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASAD 538 (726)
Q Consensus 471 l~~~~~iiaa~Np~~g~--------~~~~--~~~~~--~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~ 538 (726)
+ .++.||+|+|+.... .... ....+ ...++++|++|||.++.++++.. +.-..|..+.+.....
T Consensus 596 ~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~-~~~~~i~~~~l~~~~~-- 671 (758)
T 1r6b_X 596 F-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLST-DVIHQVVDKFIVELQV-- 671 (758)
T ss_dssp C-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCH-HHHHHHHHHHHHHHHH--
T ss_pred c-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCH-HHHHHHHHHHHHHHHH--
Confidence 5 679999999984211 1000 00011 12688999999998887776654 3334455544432111
Q ss_pred cccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCC--hhHHHHHHHHHHH
Q 004862 539 AVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPIT--VRQLEAIVRLSEA 616 (726)
Q Consensus 539 ~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t--~R~L~~lirla~a 616 (726)
.+....+...+++++.+.|.++ .|+.+ +|+|.++++.+..
T Consensus 672 -------------------~~~~~~~~~~~~~~a~~~l~~~-------------------~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 672 -------------------QLDQKGVSLEVSQEARNWLAEK-------------------GYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp -------------------HHHHTTEEEEECHHHHHHHHHH-------------------HCBTTTBTTTHHHHHHHHHT
T ss_pred -------------------HHHHCCcEEEeCHHHHHHHHHh-------------------CCCcCCCchHHHHHHHHHHH
Confidence 0111223456899999999886 36666 9999999875543
No 25
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.56 E-value=4.9e-14 Score=152.65 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=95.4
Q ss_pred CeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeee
Q 004862 433 GVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIF 512 (726)
Q Consensus 433 gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~ 512 (726)
+|+||||++.|+++.++.|+..+++....+ .....+..+.+|++++. .....++++|++||.. +
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~~----~ii~t~~~~~~i~~t~~-----------~~~~~l~~~l~sR~~~-i 254 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAPV----LIMATNRGITRIRGTSY-----------QSPHGIPIDLLDRLLI-V 254 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCCE----EEEEESCSEEECBTSSC-----------EEETTCCHHHHTTEEE-E
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCCe----eeeecccceeeeeccCC-----------CCcccCCHHHHhhccE-E
Confidence 699999999999999999999998743211 00011122344444421 1123478999999987 4
Q ss_pred EeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 513 IVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 513 ~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
.++++..++ -..+..+. ++. ....+++++.+.|.++
T Consensus 255 ~~~~~~~~e-~~~il~~~-----------------------------~~~-~~~~~~~~~l~~l~~~------------- 290 (368)
T 3uk6_A 255 STTPYSEKD-TKQILRIR-----------------------------CEE-EDVEMSEDAYTVLTRI------------- 290 (368)
T ss_dssp EECCCCHHH-HHHHHHHH-----------------------------HHH-TTCCBCHHHHHHHHHH-------------
T ss_pred EecCCCHHH-HHHHHHHH-----------------------------HHH-cCCCCCHHHHHHHHHH-------------
Confidence 565553222 11111111 111 2345899999999887
Q ss_pred ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 593 ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
.+++++|.+.++++.|...|..+.+..|+.+|+.+|+..+
T Consensus 291 ------~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 291 ------GLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ------HHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred ------hcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 3558999999999999999999999999999999999764
No 26
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-13 Score=148.54 Aligned_cols=189 Identities=15% Similarity=0.181 Sum_probs=114.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceee---cCCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVL---ADGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~l---a~~gvl~iDEi~~~~ 444 (726)
-.+||+||||||||++|+++|..+...++.. +...+....+. .++..+. ..+.. ....|+||||||.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v----~~s~l~sk~vG---ese~~vr-~lF~~Ar~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRV----SGAELVQKYIG---EGSRMVR-ELFVMAREHAPSIIFMDEIDSIG 254 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHTCEEEEE----EGGGGSCSSTT---HHHHHHH-HHHHHHHHTCSEEEEEESSSCCT
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhCCCceEE----EhHHhhccccc---hHHHHHH-HHHHHHHHhCCceEeeecchhhc
Confidence 3599999999999999999999888776631 11111111000 0000000 01111 124699999999984
Q ss_pred HH-----------H---HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--cc
Q 004862 445 PE-----------D---RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RF 508 (726)
Q Consensus 445 ~~-----------~---~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RF 508 (726)
+. . ...|+..|+.-. -..++.||||||.+. .++++|++ ||
T Consensus 255 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~V~vIaATNrpd-------------~LDpAllRpGRf 310 (405)
T 4b4t_J 255 STRVEGSGGGDSEVQRTMLELLNQLDGFE-----------TSKNIKIIMATNRLD-------------ILDPALLRPGRI 310 (405)
T ss_dssp TSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----------CCCCEEEEEEESCSS-------------SSCHHHHSTTSS
T ss_pred cCCCCCCCCCcHHHHHHHHHHHHhhhccC-----------CCCCeEEEeccCChh-------------hCCHhHcCCCcC
Confidence 31 1 234555554211 123578999999652 28899998 99
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMR 588 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~ 588 (726)
|..+.++.+..+ -+..|++.|....+ +.+.++ .+.|...
T Consensus 311 D~~I~i~lPd~~-----~R~~Il~~~~~~~~------------------------l~~dvd---l~~lA~~--------- 349 (405)
T 4b4t_J 311 DRKIEFPPPSVA-----ARAEILRIHSRKMN------------------------LTRGIN---LRKVAEK--------- 349 (405)
T ss_dssp CCEEECCCCCHH-----HHHHHHHHHHTTSB------------------------CCSSCC---HHHHHHH---------
T ss_pred ceEEEcCCcCHH-----HHHHHHHHHhcCCC------------------------CCccCC---HHHHHHH---------
Confidence 988877654322 24455555543221 111111 1122221
Q ss_pred hhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 004862 589 RQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFT 639 (726)
Q Consensus 589 ~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 639 (726)
.-.+|.++|.++++-|...|--+.+..|+.+|+..|+.-+.
T Consensus 350 ----------t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 350 ----------MNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp ----------CCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 22478899999999998888777788999999999996543
No 27
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.52 E-value=1.7e-14 Score=153.52 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=90.8
Q ss_pred CCccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
.+|.|++.+|+.+.-++..... .....+ ..+...++||+||||||||++|+++++.+...++.. +++..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v---------~~~~l 87 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV---------SSSDL 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE---------EHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE---------chHHH
Confidence 4689999999988766531100 000001 123346899999999999999999998876654421 11111
Q ss_pred ecCCCchhh-hccCce---eecCCCeEEecccCcCCHH-----------HHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 413 RDGSSREFY-LEGGAM---VLADGGVVCIDEFDKMRPE-----------DRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 413 ~~~~~~~~~-~~~G~l---~la~~gvl~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
.....++.. .....+ .....+|+||||++.+.+. .+..|+..|+.-. ..+.++.|
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~v 157 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLV 157 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEE
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEE
Confidence 000001000 000001 1224579999999998652 3566666665321 01346889
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
|||||.+. .+.++|++||+..+.++.+.
T Consensus 158 i~atn~~~-------------~ld~al~~Rf~~~i~~~~p~ 185 (322)
T 3eie_A 158 LGATNIPW-------------QLDSAIRRRFERRIYIPLPD 185 (322)
T ss_dssp EEEESCGG-------------GSCHHHHHHCCEEEECCCCC
T ss_pred EEecCChh-------------hCCHHHHcccCeEEEeCCCC
Confidence 99999641 27899999999887766543
No 28
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=1.2e-14 Score=174.25 Aligned_cols=240 Identities=16% Similarity=0.157 Sum_probs=141.0
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC---c-EEeCCCCCCcccc
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI---A-VYTSGKGSSAAGL 407 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~---~-~~~~g~~~~~~gl 407 (726)
+...|+|++.+++.+.-++...... ..+ ..+...++||+||||||||++|++++..+.+ . ++...........
T Consensus 556 l~~~viG~~~a~~~l~~~i~~~~~g-~~~--~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 556 LHKRVVGQDEAIRAVADAIRRARAG-LKD--PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHGGG-CSC--SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred HhcccCCcHHHHHHHHHHHHHHhcc-cCC--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 3456899998888776555322000 000 0122258999999999999999999988743 2 2222111110000
Q ss_pred cceeeecCCCchhhhcc-Cc----eeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecC
Q 004862 408 TASVIRDGSSREFYLEG-GA----MVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAAN 482 (726)
Q Consensus 408 ~~~~~~~~~~~~~~~~~-G~----l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~N 482 (726)
.......+ .+....+. |. +..+.++|+||||+++++++.++.|+++|+++.++-. .|....+ .++.||+|||
T Consensus 633 ~s~l~g~~-~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~iiI~tsn 709 (854)
T 1qvr_A 633 VSRLIGAP-PGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIILTSN 709 (854)
T ss_dssp GGGC---------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEEECC
T ss_pred HHHHcCCC-CCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEEEEecC
Confidence 00000000 00011111 22 2234578999999999999999999999999997632 3333333 3577999999
Q ss_pred CCCCcCCC-------ccchh------hhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCC
Q 004862 483 PPSGRYDD-------LKSAQ------DNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKE 549 (726)
Q Consensus 483 p~~g~~~~-------~~~~~------~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 549 (726)
.....+.+ ...+. ....|.++|++|||.++.+.++. .+.-..|+.+.+......
T Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~-~edi~~i~~~~l~~~~~~------------ 776 (854)
T 1qvr_A 710 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT-KEQIRQIVEIQLSYLRAR------------ 776 (854)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCC-HHHHHHHHHHHHHHHHHH------------
T ss_pred cChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCC-HHHHHHHHHHHHHHHHHH------------
Confidence 63111100 00011 24468899999999877776643 443456666655432211
Q ss_pred HHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHH
Q 004862 550 ENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEA 616 (726)
Q Consensus 550 ~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a 616 (726)
+.+..+.+.+++++.+.|.++. .+||+++|+|+++++.+..
T Consensus 777 ---------~~~~~~~~~~~~~a~~~L~~~~-----------------~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 777 ---------LAEKRISLELTEAAKDFLAERG-----------------YDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp ---------HHTTTCEEEECHHHHHHHHHHH-----------------CBTTTBTSTHHHHHHHHTH
T ss_pred ---------HHhCCceEEECHHHHHHHHHcC-----------------CCCCCChHHHHHHHHHHHH
Confidence 1111234579999999999871 1349999999999986643
No 29
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.51 E-value=5.3e-13 Score=144.98 Aligned_cols=301 Identities=10% Similarity=0.030 Sum_probs=171.0
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhC---------CCc-EEeCCCCC-
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTA---------PIA-VYTSGKGS- 402 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~---------~~~-~~~~g~~~- 402 (726)
+.++|++.....+.-.+-.... .....+++|+||||||||++++.+++.+ ... ++..+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 5688999988888766632100 0122589999999999999999998766 222 22222111
Q ss_pred Ccccccceeee---c--CCCch-h-hhccCce-eecCCC---eEEecccCcCCHH--HHHHHHHHHhcceEeeeccceEE
Q 004862 403 SAAGLTASVIR---D--GSSRE-F-YLEGGAM-VLADGG---VVCIDEFDKMRPE--DRVAIHEAMEQQTISIAKAGITT 469 (726)
Q Consensus 403 ~~~gl~~~~~~---~--~~~~~-~-~~~~G~l-~la~~g---vl~iDEi~~~~~~--~~~~L~~~me~~~i~i~~~g~~~ 469 (726)
+...+...+.. . +..+. . ....... .+...| +++|||++.+... .+..|...++...-.
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~-------- 162 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL-------- 162 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--------
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc--------
Confidence 10000000000 0 00000 0 0000000 111233 9999999999876 677777766532100
Q ss_pred EeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCe-eeEeccCCChhhhHHHHHHHHHHhhhcccccccccccC
Q 004862 470 VLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL-IFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSK 548 (726)
Q Consensus 470 ~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl-i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 548 (726)
..+.++.+|+++|.+. ....+.+++.+||.. .+.++++..++ -..+..+.+
T Consensus 163 ~~~~~~~~I~~t~~~~----------~~~~l~~~l~~r~~~~~i~l~~l~~~~-~~~il~~~~----------------- 214 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLG----------FVENLEPRVKSSLGEVELVFPPYTAPQ-LRDILETRA----------------- 214 (387)
T ss_dssp -----CEEEEECSCST----------TSSSSCHHHHTTTTSEECCBCCCCHHH-HHHHHHHHH-----------------
T ss_pred CCCceEEEEEEECCCc----------hHhhhCHHHHhcCCCeEEeeCCCCHHH-HHHHHHHHH-----------------
Confidence 0034688999999641 112367889999975 56555444221 111111111
Q ss_pred CHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccH
Q 004862 549 EENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATE 628 (726)
Q Consensus 549 ~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~ 628 (726)
..+ .....+++++.+.+.++.. ..++++|.+.++++.|...|....+..|+.
T Consensus 215 ---------~~~--~~~~~~~~~~~~~l~~~~~-----------------~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~ 266 (387)
T 2v1u_A 215 ---------EEA--FNPGVLDPDVVPLCAALAA-----------------REHGDARRALDLLRVAGEIAERRREERVRR 266 (387)
T ss_dssp ---------HHH--BCTTTBCSSHHHHHHHHHH-----------------SSSCCHHHHHHHHHHHHHHHHHTTCSCBCH
T ss_pred ---------Hhh--ccCCCCCHHHHHHHHHHHH-----------------HhccCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 100 0123578888888887631 236899999999999988888778889999
Q ss_pred HHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH----c---CCCHHHHH
Q 004862 629 NEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTR----M---GMNESIIR 701 (726)
Q Consensus 629 ~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~---g~~~~~~~ 701 (726)
+|+..|+.....+.....- .+++..+...+ .++.........+...++++.... . .++...+.
T Consensus 267 ~~v~~a~~~~~~~~~~~~~------~~l~~~~~~~l----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (387)
T 2v1u_A 267 EHVYSARAEIERDRVSEVV------RTLPLHAKLVL----LSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVS 336 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HSSCHHHHHHH----HHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHHHHhhchHHHHH------HcCCHHHHHHH----HHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 9999998766433221111 12333333332 333322221235666766665553 2 45678999
Q ss_pred HHHHHHHHCCeEEEe
Q 004862 702 RALIIMHQRDEVEYK 716 (726)
Q Consensus 702 ~~l~~l~~~g~i~~~ 716 (726)
+.++.|...|++...
T Consensus 337 ~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 337 GIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCeEEE
Confidence 999999999999874
No 30
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=6.2e-13 Score=144.75 Aligned_cols=310 Identities=13% Similarity=0.022 Sum_probs=173.9
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcc--eEEEECCCchhHHHHHHHHHHhCCCc-----EEeCCC-CCCcc
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDV--NVLLLGDPSTAKSQFLKFVEKTAPIA-----VYTSGK-GSSAA 405 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~--~vLL~G~pGtGKt~la~~i~~~~~~~-----~~~~g~-~~~~~ 405 (726)
+.++|++...+.+.-.+...... .... +++|+||||||||++++.++..+... ++..+. ..+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 56889988777766555432100 1113 79999999999999999998776432 222211 11100
Q ss_pred cccceeee---c--CCCc----hhhhccCceeecCCC--eEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 406 GLTASVIR---D--GSSR----EFYLEGGAMVLADGG--VVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 406 gl~~~~~~---~--~~~~----~~~~~~G~l~la~~g--vl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
.+...+.. . +..+ ...-.-.....+.++ +++|||++.++++.+..|+.++++.. ..+ ..+
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~----~~~-----~~~ 159 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD----KLG-----AFR 159 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH----HHS-----SCC
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCC----CCC-----cCC
Confidence 00000000 0 0000 000000000011233 89999999999999999999886431 000 136
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhcccCe-eeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHH
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL-IFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWL 553 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl-i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L 553 (726)
+.+|+++|.+ .....+.+++.+||.. .+.+++...++ -..+..+
T Consensus 160 ~~iI~~~~~~----------~~~~~l~~~~~~r~~~~~i~~~pl~~~~-~~~~l~~------------------------ 204 (389)
T 1fnn_A 160 IALVIVGHND----------AVLNNLDPSTRGIMGKYVIRFSPYTKDQ-IFDILLD------------------------ 204 (389)
T ss_dssp EEEEEEESST----------HHHHTSCHHHHHHHTTCEEECCCCBHHH-HHHHHHH------------------------
T ss_pred EEEEEEECCc----------hHHHHhCHHhhhcCCCceEEeCCCCHHH-HHHHHHH------------------------
Confidence 7888988843 1112367788999985 55555444221 1111111
Q ss_pred HHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHH
Q 004862 554 KRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNE 633 (726)
Q Consensus 554 ~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ 633 (726)
....+. ....+++++.+.+.++.. .......+++++|.+.++++.|...|..+....|+.+|+..
T Consensus 205 --~~~~~~--~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~ 269 (389)
T 1fnn_A 205 --RAKAGL--AEGSYSEDILQMIADITG-----------AQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRK 269 (389)
T ss_dssp --HHHHHB--CTTSSCHHHHHHHHHHHS-----------BSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred --HHHhhc--CCCCCCHHHHHHHHHHHh-----------hcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 111110 122578888888877620 00000012789999999999999888887888999999999
Q ss_pred HHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-------cCCCHHHHHHHHHH
Q 004862 634 AVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTR-------MGMNESIIRRALII 706 (726)
Q Consensus 634 ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~l~~ 706 (726)
|+.-...+.....- ..++..+...+..+....+.. .+..++.+++++.... ..++...+.+.++.
T Consensus 270 ~~~~~~~~~~~~~l------~~l~~~~~~~L~~l~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (389)
T 1fnn_A 270 SSKEVLFGISEEVL------IGLPLHEKLFLLAIVRSLKIS--HTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLND 341 (389)
T ss_dssp HHHHHSCCCCHHHH------HHSCHHHHHHHHHHHHHHHHH--CSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHH------HcCCHHHHHHHHHHHHHHhhc--cCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 88654432211100 123333333333333222211 1225666666665544 34578999999999
Q ss_pred HHHCCeEEEecC
Q 004862 707 MHQRDEVEYKRE 718 (726)
Q Consensus 707 l~~~g~i~~~~~ 718 (726)
|...|+|.....
T Consensus 342 L~~~gli~~~~~ 353 (389)
T 1fnn_A 342 LREKGIVETRQN 353 (389)
T ss_dssp HHHTTSSEEEEC
T ss_pred HHhCCCeEEeee
Confidence 999999997644
No 31
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.50 E-value=1.1e-13 Score=142.19 Aligned_cols=219 Identities=21% Similarity=0.251 Sum_probs=125.0
Q ss_pred cCCccCchhHHHHHHHHH--hCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE-eCCCCCCcccccc
Q 004862 333 APSIFGHDDVKKAVSCLL--FGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY-TSGKGSSAAGLTA 409 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L--~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~-~~g~~~~~~gl~~ 409 (726)
+.+|+|++.+|+.+.-.+ +..... . .....+...++||+||||||||++|++++..+...++ ..+.. +..
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~-----~~~ 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSR-F-QKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD-----FVE 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGG-C------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS-----STT
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHH-H-HHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH-----HHH
Confidence 346889999888764332 111110 0 0001122357999999999999999999988764433 22211 100
Q ss_pred eeeecCCCchhhhccCceeec---CCCeEEecccCcCCHH--------------HHHHHHHHHhcceEeeeccceEEEee
Q 004862 410 SVIRDGSSREFYLEGGAMVLA---DGGVVCIDEFDKMRPE--------------DRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~G~l~la---~~gvl~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
..... +.... .+.+..+ ..+++||||++.+... ....++..|+.-. -+
T Consensus 84 ~~~~~---~~~~~-~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~ 148 (257)
T 1lv7_A 84 MFVGV---GASRV-RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GN 148 (257)
T ss_dssp SCCCC---CHHHH-HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----------SS
T ss_pred Hhhhh---hHHHH-HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----------cC
Confidence 00000 00000 0111111 2359999999877542 2234444444211 13
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEE 550 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 550 (726)
.++.||+|||++. .+.+++++ ||+..+.+..++.++ - ..++..+...
T Consensus 149 ~~~~vI~~tn~~~-------------~l~~~l~r~~rf~~~i~i~~P~~~~-r----~~il~~~~~~------------- 197 (257)
T 1lv7_A 149 EGIIVIAATNRPD-------------VLDPALLRPGRFDRQVVVGLPDVRG-R----EQILKVHMRR------------- 197 (257)
T ss_dssp SCEEEEEEESCTT-------------TSCGGGGSTTSSCEEEECCCCCHHH-H----HHHHHHHHTT-------------
T ss_pred CCEEEEEeeCCch-------------hCCHHHcCCCcCCeEEEeCCCCHHH-H----HHHHHHHHhc-------------
Confidence 4688999999652 26677777 999877765544222 1 2222222111
Q ss_pred HHHHHHHHHhHccCCCCCCHHH-HHHHHHHHHHHHHHHhhhhcccCCCCCccC-ChhHHHHHHHHHHHHHhhhCCCcccH
Q 004862 551 NWLKRYIQYCRLECHPRLSESA-SAKLRDQYVQIRKDMRRQANETGEAAPIPI-TVRQLEAIVRLSEALAKMKLSHVATE 628 (726)
Q Consensus 551 ~~L~~yi~~a~~~~~p~ls~ea-~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~-t~R~L~~lirla~a~A~l~~~~~V~~ 628 (726)
. .+++++ ...+.. .|++ |+|+|+++++.|...|..+.+..|+.
T Consensus 198 -------------~--~l~~~~~~~~la~--------------------~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~ 242 (257)
T 1lv7_A 198 -------------V--PLAPDIDAAIIAR--------------------GTPGFSGADLANLVNEAALFAARGNKRVVSM 242 (257)
T ss_dssp -------------S--CBCTTCCHHHHHH--------------------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred -------------C--CCCccccHHHHHH--------------------HcCCCCHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 0 122222 222221 4777 99999999999999998888899999
Q ss_pred HHHHHHHHHHh
Q 004862 629 NEVNEAVRLFT 639 (726)
Q Consensus 629 ~Dv~~ai~l~~ 639 (726)
+|+..|+..+.
T Consensus 243 ~~~~~a~~~~~ 253 (257)
T 1lv7_A 243 VEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999997553
No 32
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.50 E-value=8.9e-15 Score=136.79 Aligned_cols=118 Identities=11% Similarity=0.141 Sum_probs=84.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.||||+||||||||++|++++..+++.-. ++. +.++...+. ....|.+..+++|++|||||+.++++.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~------~~v-~~~~~~~~~-----~~~~~~~~~a~~g~l~ldei~~l~~~~ 92 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQG------EFV-YRELTPDNA-----PQLNDFIALAQGGTLVLSHPEHLTREQ 92 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTS------CCE-EEECCTTTS-----SCHHHHHHHHTTSCEEEECGGGSCHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCC------CEE-EECCCCCcc-----hhhhcHHHHcCCcEEEEcChHHCCHHH
Confidence 79999999999999999999998765311 222 333322211 112345567789999999999999999
Q ss_pred HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeEecc
Q 004862 448 RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKD 516 (726)
Q Consensus 448 ~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d 516 (726)
|..|+++|+.. +.++++|+|||.+. ........+.+.|++|+. +.+.+|+
T Consensus 93 q~~Ll~~l~~~-------------~~~~~~I~~t~~~~------~~~~~~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 93 QYHLVQLQSQE-------------HRPFRLIGIGDTSL------VELAASNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp HHHHHHHHHSS-------------SCSSCEEEEESSCH------HHHHHHSCCCHHHHHHHHHHEEECCC
T ss_pred HHHHHHHHhhc-------------CCCEEEEEECCcCH------HHHHHcCCCCHHHHHHhcCCEEeCCC
Confidence 99999999432 34678999999532 233345668899999987 4455554
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.50 E-value=2e-13 Score=149.19 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=89.7
Q ss_pred CCccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
.+|+|++.+++.+...+..... .....+. .....++||+||||||||++|++++......++.... ..+.....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~----~~l~~~~~ 189 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA----ASLTSKYV 189 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGG-GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS----CCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhccc-CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH----HHhhcccc
Confidence 4689999999988766632100 0000010 1223689999999999999999999988766553211 11111111
Q ss_pred ecCCCchhhhccCce---eecCCCeEEecccCcC-----------CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEE
Q 004862 413 RDGSSREFYLEGGAM---VLADGGVVCIDEFDKM-----------RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVL 478 (726)
Q Consensus 413 ~~~~~~~~~~~~G~l---~la~~gvl~iDEi~~~-----------~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ii 478 (726)
.. . .. .....+ .....+|+||||||.+ ....+..|+..|+... ...+.++.||
T Consensus 190 g~--~-~~-~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vI 256 (389)
T 3vfd_A 190 GE--G-EK-LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ---------SAGDDRVLVM 256 (389)
T ss_dssp ----C-HH-HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--------------CEEEE
T ss_pred ch--H-HH-HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc---------ccCCCCEEEE
Confidence 00 0 00 000111 1223479999999988 3445566777776322 1224578999
Q ss_pred EecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 479 AAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 479 aa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
||||++. .+.+++++||+.++.+..+.
T Consensus 257 ~atn~~~-------------~l~~~l~~R~~~~i~i~~p~ 283 (389)
T 3vfd_A 257 GATNRPQ-------------ELDEAVLRRFIKRVYVSLPN 283 (389)
T ss_dssp EEESCGG-------------GCCHHHHTTCCEEEECCCCC
T ss_pred EecCCch-------------hcCHHHHcCcceEEEcCCcC
Confidence 9999641 37889999999777665544
No 34
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.49 E-value=1.8e-13 Score=142.73 Aligned_cols=226 Identities=19% Similarity=0.172 Sum_probs=130.8
Q ss_pred CCccCchhHHHHHHHHHhCCCcc-cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRK-NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~-~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
.+|+|++.+++.+.-.+...... ..-.....+...++||+||||||||++|++++..+...++... ...+....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~----~~~~~~~~- 91 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVV----GSELVKKF- 91 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE----GGGGCCCS-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe----hHHHHHhc-
Confidence 35788888888776544221000 0000000122368999999999999999999998876654210 00111000
Q ss_pred ecCCCchhh-hccCce---eecCCCeEEecccCcC-----------CHHHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 413 RDGSSREFY-LEGGAM---VLADGGVVCIDEFDKM-----------RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 413 ~~~~~~~~~-~~~G~l---~la~~gvl~iDEi~~~-----------~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
.+... .....+ .....+++||||++.+ +...+..|...++...- + ..+.++.|
T Consensus 92 ----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~-------~~~~~~~v 159 (285)
T 3h4m_A 92 ----IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG-F-------DARGDVKI 159 (285)
T ss_dssp ----TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT-T-------CSSSSEEE
T ss_pred ----cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC-C-------CCCCCEEE
Confidence 01000 000001 1123469999999997 45566677776654210 0 11346889
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
|+|||++ ..+++++++ ||+.++.++.+..++ -. .++..+.....
T Consensus 160 I~ttn~~-------------~~l~~~l~~~~Rf~~~i~~~~p~~~~-r~----~il~~~~~~~~---------------- 205 (285)
T 3h4m_A 160 IGATNRP-------------DILDPAILRPGRFDRIIEVPAPDEKG-RL----EILKIHTRKMN---------------- 205 (285)
T ss_dssp EEECSCG-------------GGBCHHHHSTTSEEEEEECCCCCHHH-HH----HHHHHHHTTSC----------------
T ss_pred EEeCCCc-------------hhcCHHHcCCCcCCeEEEECCCCHHH-HH----HHHHHHHhcCC----------------
Confidence 9999964 126788888 999888776655333 12 22222111100
Q ss_pred HHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 556 YIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 556 yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
+. .+.....+... ....++|.++.+++.|...|..+.++.|+.+|+.+|+
T Consensus 206 --------~~---~~~~~~~l~~~-------------------~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al 255 (285)
T 3h4m_A 206 --------LA---EDVNLEEIAKM-------------------TEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAV 255 (285)
T ss_dssp --------BC---TTCCHHHHHHH-------------------CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred --------CC---CcCCHHHHHHH-------------------cCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHH
Confidence 11 11112222222 2336889999999999999999999999999999999
Q ss_pred HHHhh
Q 004862 636 RLFTV 640 (726)
Q Consensus 636 ~l~~~ 640 (726)
.-+..
T Consensus 256 ~~~~~ 260 (285)
T 3h4m_A 256 EKIME 260 (285)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76543
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.49 E-value=1.1e-13 Score=149.11 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=90.8
Q ss_pred cCCccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccccee
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASV 411 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~ 411 (726)
+.+|.|++.+|+.+.-++..... .....+ ..+...++||+||||||||++|++++..+...++.. +...+....
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v----~~~~l~~~~ 124 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV----SSSDLVSKW 124 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE----EHHHHHSCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe----eHHHHhhhh
Confidence 45689999999988766532100 000000 113346899999999999999999999876654421 001111110
Q ss_pred eecCCCchhhhccCcee---ecCCCeEEecccCcCCHH-----------HHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 412 IRDGSSREFYLEGGAMV---LADGGVVCIDEFDKMRPE-----------DRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 412 ~~~~~~~~~~~~~G~l~---la~~gvl~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
... .... + ...+. ....+|+||||++.+.+. .+..|+..|+.-. ..+.++.|
T Consensus 125 ~g~--~~~~-~-~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~v 190 (355)
T 2qp9_X 125 MGE--SEKL-V-KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLV 190 (355)
T ss_dssp -----CHHH-H-HHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEE
T ss_pred cch--HHHH-H-HHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEE
Confidence 000 0000 0 00111 124679999999998743 3566677666321 11346889
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
|||||.+. .+.+++++||+..+.++.+.
T Consensus 191 I~atn~~~-------------~ld~al~rRf~~~i~i~~P~ 218 (355)
T 2qp9_X 191 LGATNIPW-------------QLDSAIRRRFERRIYIPLPD 218 (355)
T ss_dssp EEEESCGG-------------GSCHHHHHTCCEEEECCCCC
T ss_pred EeecCCcc-------------cCCHHHHcccCEEEEeCCcC
Confidence 99999642 37889999999888766544
No 36
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.2e-13 Score=148.73 Aligned_cols=191 Identities=16% Similarity=0.183 Sum_probs=115.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCcee---ecCCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMV---LADGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~---la~~gvl~iDEi~~~~ 444 (726)
-.|||+||||||||++|+++|..+...++.. +...+....+.+ ++..+. ..+. .....|+||||+|.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v----~~s~l~sk~vGe---sek~ir-~lF~~Ar~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSATFLRI----VGSELIQKYLGD---GPRLCR-QIFKVAGENAPSIVFIDEIDAIG 288 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTCEEEEE----ESGGGCCSSSSH---HHHHHH-HHHHHHHHTCSEEEEEEEESSSS
T ss_pred CCCceECCCCchHHHHHHHHHHHhCCCEEEE----EHHHhhhccCch---HHHHHH-HHHHHHHhcCCcEEEEehhhhhc
Confidence 4699999999999999999999888776632 111111111100 000000 0011 1124699999999873
Q ss_pred HH-----------HH---HHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--cc
Q 004862 445 PE-----------DR---VAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RF 508 (726)
Q Consensus 445 ~~-----------~~---~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RF 508 (726)
.. .+ ..|+..|+... -..++.||||||.+. .++++|++ ||
T Consensus 289 ~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----------~~~~ViVIaATNrpd-------------~LDpALlRpGRf 344 (437)
T 4b4t_I 289 TKRYDSNSGGEREIQRTMLELLNQLDGFD-----------DRGDVKVIMATNKIE-------------TLDPALIRPGRI 344 (437)
T ss_dssp CCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----------CSSSEEEEEEESCST-------------TCCTTSSCTTTE
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHhhCcC-----------CCCCEEEEEeCCChh-------------hcCHHHhcCCce
Confidence 21 22 33444444211 124578999999652 28899998 99
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMR 588 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~ 588 (726)
|..+.++.+. ..-+..|+..|..... +.+.++ .+.|...
T Consensus 345 D~~I~v~lPd-----~~~R~~Il~~~l~~~~------------------------l~~dvd---l~~LA~~--------- 383 (437)
T 4b4t_I 345 DRKILFENPD-----LSTKKKILGIHTSKMN------------------------LSEDVN---LETLVTT--------- 383 (437)
T ss_dssp EEEECCCCCC-----HHHHHHHHHHHHTTSC------------------------BCSCCC---HHHHHHH---------
T ss_pred eEEEEcCCcC-----HHHHHHHHHHHhcCCC------------------------CCCcCC---HHHHHHh---------
Confidence 9877765432 2234555655543221 111111 1122221
Q ss_pred hhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhh
Q 004862 589 RQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVS 641 (726)
Q Consensus 589 ~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 641 (726)
.-.+|.++|+++++-|...|--+.+..|+.+|+..|++-+..+
T Consensus 384 ----------T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 384 ----------KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp ----------CCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 2347889999999999888877888899999999999765443
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.48 E-value=3e-13 Score=134.57 Aligned_cols=203 Identities=16% Similarity=0.173 Sum_probs=126.3
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
+.+++|++.+++.+.-.+..+. ..|+||+||||||||++++.+++.+....+ ......+.+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~----~~~~~~~~~~~~ 79 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN------------IPHLLFSGPPGTGKTATAIALARDLFGENW----RDNFIEMNASDE 79 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC------------CCCEEEECSTTSSHHHHHHHHHHHHHGGGG----GGGEEEEETTCT
T ss_pred HHHHcCcHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHHhcccc----ccceEEeccccc
Confidence 4458899999988887776541 146999999999999999999875421100 000000110000
Q ss_pred ecCC-----CchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCc
Q 004862 413 RDGS-----SREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGR 487 (726)
Q Consensus 413 ~~~~-----~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~ 487 (726)
.... ...+ ........+..++++|||++.++++.+..|+..++.. +.++.+|+++|.+
T Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~--- 142 (226)
T 2chg_A 80 RGIDVVRHKIKEF-ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYV--- 142 (226)
T ss_dssp TCHHHHHHHHHHH-HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCG---
T ss_pred cChHHHHHHHHHH-hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCh---
Confidence 0000 0000 0000111245679999999999999999999999863 2356788888853
Q ss_pred CCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHH-hHccCCC
Q 004862 488 YDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQY-CRLECHP 566 (726)
Q Consensus 488 ~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~-a~~~~~p 566 (726)
..+.+++.+||. .+.+.+...++ ++.++.. ++. ...
T Consensus 143 ----------~~~~~~l~~r~~-~i~~~~~~~~~-------------------------------~~~~l~~~~~~-~~~ 179 (226)
T 2chg_A 143 ----------SRIIEPIQSRCA-VFRFKPVPKEA-------------------------------MKKRLLEICEK-EGV 179 (226)
T ss_dssp ----------GGSCHHHHTTSE-EEECCCCCHHH-------------------------------HHHHHHHHHHH-HTC
T ss_pred ----------hhcCHHHHHhCc-eeecCCCCHHH-------------------------------HHHHHHHHHHH-cCC
Confidence 136788999998 55555444222 1122111 111 122
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 567 RLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 567 ~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
.+++++.+.|... +++++|.+.++++.+...+ +.|+.+|+.+++.
T Consensus 180 ~~~~~~~~~l~~~--------------------~~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 180 KITEDGLEALIYI--------------------SGGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp CBCHHHHHHHHHH--------------------HTTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 4788888877754 5689999999987665443 6899999998874
No 38
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.3e-13 Score=148.47 Aligned_cols=187 Identities=22% Similarity=0.253 Sum_probs=114.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeC-CC--CCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS-GK--GSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~-g~--~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~ 444 (726)
-.+||+||||||||++|+++|..+...++.. +. .+...|-+...+++ .|.. + ......|+||||+|.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~----lF~~-A---~~~aP~IifiDEiD~i~ 278 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRD----VFRL-A---RENAPSIIFIDEVDSIA 278 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHH----HHHH-H---HHTCSEEEEEECTHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHH----HHHH-H---HHcCCCeeechhhhhhh
Confidence 3599999999999999999999988776632 10 00111111111110 0000 0 01124699999998652
Q ss_pred H-----------H---HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--cc
Q 004862 445 P-----------E---DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RF 508 (726)
Q Consensus 445 ~-----------~---~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RF 508 (726)
. . ....|+..|+.-. . ..++.||||||.+. .++++|++ ||
T Consensus 279 ~~R~~~~~~~~~~~~r~l~~lL~~ldg~~----~-------~~~v~vI~aTN~~~-------------~LD~AllRpGRf 334 (428)
T 4b4t_K 279 TKRFDAQTGSDREVQRILIELLTQMDGFD----Q-------STNVKVIMATNRAD-------------TLDPALLRPGRL 334 (428)
T ss_dssp CSCSSSCSCCCCHHHHHHHHHHHHHHHSC----S-------SCSEEEEEEESCSS-------------SCCHHHHSSSSE
T ss_pred ccccCCCCCCChHHHHHHHHHHHHhhCCC----C-------CCCEEEEEecCChh-------------hcChhhhcCCcc
Confidence 1 1 2345666665311 0 23578999999652 28899998 99
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMR 588 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~ 588 (726)
|..+.+++.|+.+. +..|+..+..... +.+.++ .+.|...
T Consensus 335 d~~I~~p~lPd~~~----R~~Il~~~~~~~~------------------------l~~~~d---l~~lA~~--------- 374 (428)
T 4b4t_K 335 DRKIEFPSLRDRRE----RRLIFGTIASKMS------------------------LAPEAD---LDSLIIR--------- 374 (428)
T ss_dssp EEEEECCSSCCHHH----HHHHHHHHHHSSC------------------------BCTTCC---HHHHHHH---------
T ss_pred eEEEEcCCCCCHHH----HHHHHHHHhcCCC------------------------CCcccC---HHHHHHH---------
Confidence 99888887775543 3344444432211 111111 1222221
Q ss_pred hhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 589 RQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 589 ~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
.-.+|.++|.++++-|.-.|--+.+..|+.+|+.+|+.
T Consensus 375 ----------t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 375 ----------NDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp ----------TTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 12378899999999988888778888999999999985
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.47 E-value=3.5e-13 Score=143.19 Aligned_cols=156 Identities=21% Similarity=0.188 Sum_probs=87.8
Q ss_pred cCCccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhC-CCcEEe-CCCCCCcccccc
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTA-PIAVYT-SGKGSSAAGLTA 409 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~-~~~~~~-~g~~~~~~gl~~ 409 (726)
+.+|.|++.+|+.+.-++.-... .....|. .....++||+||||||||++|+++++.+ ...++. .+. .+..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~-----~l~~ 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS-----DLVS 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECC-----SSCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhH-----HHHh
Confidence 34689999998887654421100 0000111 1233689999999999999999999987 333331 111 1111
Q ss_pred eeeecCCCchhhhccCceeecCCCeEEecccCcCCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEEE
Q 004862 410 SVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVL 478 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ii 478 (726)
...... .......-........+|+||||+|.+.+ ..+..|+..|+.-. .-+.++.||
T Consensus 85 ~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI 153 (322)
T 1xwi_A 85 KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVL 153 (322)
T ss_dssp SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEE
T ss_pred hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc----------ccCCCEEEE
Confidence 100000 00000000000123457999999999832 23345555555321 013468999
Q ss_pred EecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 479 AAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 479 aa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
||||.+. .+.++|++|||..+.++.+.
T Consensus 154 ~atn~~~-------------~ld~al~rRf~~~i~i~~P~ 180 (322)
T 1xwi_A 154 GATNIPW-------------VLDSAIRRRFEKRIYIPLPE 180 (322)
T ss_dssp EEESCTT-------------TSCHHHHHTCCEEEECCCCC
T ss_pred EecCCcc-------------cCCHHHHhhcCeEEEeCCcC
Confidence 9999752 27789999999887776544
No 40
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.47 E-value=3.8e-13 Score=146.33 Aligned_cols=189 Identities=16% Similarity=0.164 Sum_probs=114.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCcee---ecCCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMV---LADGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~---la~~gvl~iDEi~~~~ 444 (726)
-.|||+||||||||++|+++|..+...++.. +...+....+. .++..+. ..+. .....|+||||+|.+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~~~fi~v----s~s~L~sk~vG---esek~ir-~lF~~Ar~~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTDATFIRV----IGSELVQKYVG---EGARMVR-ELFEMARTKKACIIFFDEIDAVG 315 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHTCEEEEE----EGGGGCCCSSS---HHHHHHH-HHHHHHHHTCSEEEEEECCTTTS
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCCCeEEE----EhHHhhcccCC---HHHHHHH-HHHHHHHhcCCceEeeccccccc
Confidence 4699999999999999999999888776531 11111111100 0000000 0011 1234699999999874
Q ss_pred HH-----------H---HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--cc
Q 004862 445 PE-----------D---RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RF 508 (726)
Q Consensus 445 ~~-----------~---~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RF 508 (726)
.. . ...|+..|+... -..++.||||||.+. .+.++|++ ||
T Consensus 316 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~ViVIaATNrpd-------------~LDpALlRpGRF 371 (467)
T 4b4t_H 316 GARFDDGAGGDNEVQRTMLELITQLDGFD-----------PRGNIKVMFATNRPN-------------TLDPALLRPGRI 371 (467)
T ss_dssp BCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----------CTTTEEEEEECSCTT-------------SBCHHHHSTTTC
T ss_pred ccccCcCCCccHHHHHHHHHHHHHhhccC-----------CCCcEEEEeCCCCcc-------------cCChhhhccccc
Confidence 21 1 233444444211 124678999999652 28899988 99
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMR 588 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~ 588 (726)
|..+.++.+. . .-+..|++.|..... +.+.++ .+.|...
T Consensus 372 D~~I~i~lPd-~----~~R~~Ilk~~l~~~~------------------------l~~dvd---l~~LA~~--------- 410 (467)
T 4b4t_H 372 DRKVEFSLPD-L----EGRANIFRIHSKSMS------------------------VERGIR---WELISRL--------- 410 (467)
T ss_dssp CEEECCCCCC-H----HHHHHHHHHHHTTSC------------------------BCSSCC---HHHHHHH---------
T ss_pred cEEEEeCCcC-H----HHHHHHHHHHhcCCC------------------------CCCCCC---HHHHHHH---------
Confidence 9888776543 2 234555555543321 111111 1112221
Q ss_pred hhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 004862 589 RQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFT 639 (726)
Q Consensus 589 ~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 639 (726)
.-.+|.++|.++++-|.-.|-.+.+..|+.+|+..|+.-+.
T Consensus 411 ----------T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 411 ----------CPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 451 (467)
T ss_dssp ----------CCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Confidence 22368899999999998888778889999999999986543
No 41
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.46 E-value=4.2e-13 Score=140.89 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=89.1
Q ss_pred CCccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
.+|+|++.+|+.+.-++..... .....+. .....++||+||||||||++|++++..+...++.... ..+.....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~----~~l~~~~~ 95 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISA----ASLTSKYV 95 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES----TTTSSSSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH----HHHhhccc
Confidence 4689999999988766532110 0000110 1223689999999999999999999988655432110 00110000
Q ss_pred ecCCCchh-hhccCceeecCCCeEEecccCcCCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEe
Q 004862 413 RDGSSREF-YLEGGAMVLADGGVVCIDEFDKMRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAA 480 (726)
Q Consensus 413 ~~~~~~~~-~~~~G~l~la~~gvl~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa 480 (726)
.+ .... ...-+.......+++||||++.+.. ..+..|+..|+..... ....++.||+|
T Consensus 96 ~~--~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~ 165 (297)
T 3b9p_A 96 GD--GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAA 165 (297)
T ss_dssp SC--HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEE
T ss_pred ch--HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEee
Confidence 00 0000 0000001123568999999998843 3445666666643211 11235789999
Q ss_pred cCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 481 ANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 481 ~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
||.+. .+.+++++||+..+.++.+.
T Consensus 166 tn~~~-------------~l~~~l~~R~~~~i~~~~p~ 190 (297)
T 3b9p_A 166 TNRPQ-------------ELDEAALRRFTKRVYVSLPD 190 (297)
T ss_dssp ESCGG-------------GBCHHHHHHCCEEEECCCCC
T ss_pred cCChh-------------hCCHHHHhhCCeEEEeCCcC
Confidence 99541 37889999999777665443
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.46 E-value=9.1e-13 Score=142.12 Aligned_cols=238 Identities=16% Similarity=0.151 Sum_probs=124.3
Q ss_pred CCccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
.+|+|++.+|+.+.-++..... .....+ ..+...++||+||||||||++|++++..+...++.. +++..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i---------~~~~l 153 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTG-LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSI---------SASSL 153 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCG-GGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE---------EGGGG
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhh-ccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE---------ehHHh
Confidence 4689999999888765532100 000000 012346899999999999999999999886554421 11111
Q ss_pred ecCCCchhh-hccCce---eecCCCeEEecccCcCCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 413 RDGSSREFY-LEGGAM---VLADGGVVCIDEFDKMRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 413 ~~~~~~~~~-~~~G~l---~la~~gvl~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
.....+... .....+ .....+|+||||++.+.. ..+..|+..|+... ...+.++.|
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---------~~~~~~v~v 224 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT---------TSSEDRILV 224 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEE
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc---------ccCCCCEEE
Confidence 100011100 000011 123468999999988743 23456666665322 122457899
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHH
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYI 557 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi 557 (726)
|||||++. .+.+++++||+..+.++.+..++ -..+..+++.. .. ..++.+.+....
T Consensus 225 I~atn~~~-------------~l~~~l~~Rf~~~i~i~~p~~~~-r~~il~~~~~~----~~------~~l~~~~l~~la 280 (357)
T 3d8b_A 225 VGATNRPQ-------------EIDEAARRRLVKRLYIPLPEASA-RKQIVINLMSK----EQ------CCLSEEEIEQIV 280 (357)
T ss_dssp EEEESCGG-------------GBCHHHHTTCCEEEECCCCCHHH-HHHHHHHHHHT----SC------BCCCHHHHHHHH
T ss_pred EEecCChh-------------hCCHHHHhhCceEEEeCCcCHHH-HHHHHHHHHhh----cC------CCccHHHHHHHH
Confidence 99999641 37789999999777766544322 22222222221 10 124444444443
Q ss_pred HHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 558 QYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 558 ~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
..+ ..++......|.++ .|+.+.|++.+....+.. ......|+.+|+..|+.-
T Consensus 281 ~~t-----~G~s~~dl~~l~~~-------------------a~~~~ir~l~~~~~~~~~---~~~~~~i~~~d~~~al~~ 333 (357)
T 3d8b_A 281 QQS-----DAFSGADMTQLCRE-------------------ASLGPIRSLQTADIATIT---PDQVRPIAYIDFENAFRT 333 (357)
T ss_dssp HHT-----TTCCHHHHHHHHHH-------------------HHTHHHHHCCC-------------CCCBCHHHHHHHHHH
T ss_pred HHc-----CCCCHHHHHHHHHH-------------------HHHHHHHHhhhhhhcccc---ccccCCcCHHHHHHHHHh
Confidence 322 13444444444443 233444443332221111 122457999999999976
Q ss_pred Hhhh
Q 004862 638 FTVS 641 (726)
Q Consensus 638 ~~~s 641 (726)
+..|
T Consensus 334 ~~ps 337 (357)
T 3d8b_A 334 VRPS 337 (357)
T ss_dssp HGGG
T ss_pred cCCC
Confidence 6654
No 43
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=3.6e-12 Score=136.89 Aligned_cols=210 Identities=14% Similarity=0.143 Sum_probs=130.8
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC-------cEEeCCCCCCc
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI-------AVYTSGKGSSA 404 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~-------~~~~~g~~~~~ 404 (726)
-+.+|+|++.+++.+..++..+.. .|+||+||||||||++++++++.+.. .........
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 100 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANL------------PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE-- 100 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTC------------CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC--
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCC------------CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc--
Confidence 345789999999998888866521 46999999999999999999877531 111111000
Q ss_pred ccccceeeecCCCchhhhc--c-------CceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 405 AGLTASVIRDGSSREFYLE--G-------GAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 405 ~gl~~~~~~~~~~~~~~~~--~-------G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
.+. ...++. ...+... . +....++.++++|||++.+++..++.|++.|++.. .++
T Consensus 101 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------------~~~ 164 (353)
T 1sxj_D 101 RGI--SIVREK-VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------------GVT 164 (353)
T ss_dssp CCH--HHHTTH-HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------------TTE
T ss_pred cch--HHHHHH-HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-------------CCc
Confidence 000 001100 0001000 0 00112345699999999999999999999999742 245
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
.+|.++|.+. .+.+++.+|+. .+.+.+...+ .+..
T Consensus 165 ~~il~~~~~~-------------~l~~~l~sR~~-~i~~~~~~~~-------------------------------~~~~ 199 (353)
T 1sxj_D 165 RFCLICNYVT-------------RIIDPLASQCS-KFRFKALDAS-------------------------------NAID 199 (353)
T ss_dssp EEEEEESCGG-------------GSCHHHHHHSE-EEECCCCCHH-------------------------------HHHH
T ss_pred eEEEEeCchh-------------hCcchhhccCc-eEEeCCCCHH-------------------------------HHHH
Confidence 6777787431 27789999997 4444444322 2222
Q ss_pred HHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCC-cccHHHHHHH
Q 004862 556 YIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSH-VATENEVNEA 634 (726)
Q Consensus 556 yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~-~V~~~Dv~~a 634 (726)
++...-..-...+++++.+.|.++ ..+++|.+.++++.+...+.-.... .|+.+|+.++
T Consensus 200 ~l~~~~~~~~~~i~~~~l~~l~~~--------------------~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~ 259 (353)
T 1sxj_D 200 RLRFISEQENVKCDDGVLERILDI--------------------SAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEEL 259 (353)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHH--------------------TSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHH
Confidence 222211112235889999888876 2378999999998776665422222 7999999987
Q ss_pred HH
Q 004862 635 VR 636 (726)
Q Consensus 635 i~ 636 (726)
+.
T Consensus 260 ~~ 261 (353)
T 1sxj_D 260 AG 261 (353)
T ss_dssp HT
T ss_pred hC
Confidence 65
No 44
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=5.1e-13 Score=145.83 Aligned_cols=190 Identities=17% Similarity=0.203 Sum_probs=113.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCcee---ecCCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMV---LADGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~---la~~gvl~iDEi~~~~ 444 (726)
-.+||+||||||||++|+++|..+...++.. +...+....+.+ ++..+. ..+. .....|+||||+|.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~~~f~~v----~~s~l~~~~vGe---se~~ir-~lF~~A~~~aP~IifiDEiDal~ 287 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTNATFLKL----AAPQLVQMYIGE---GAKLVR-DAFALAKEKAPTIIFIDELDAIG 287 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEE----EGGGGCSSCSSH---HHHHHH-HHHHHHHHHCSEEEEEECTHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhCCCEEEE----ehhhhhhcccch---HHHHHH-HHHHHHHhcCCeEEeecchhhhh
Confidence 4699999999999999999999888776631 111111111000 000000 0011 1234699999999762
Q ss_pred H-----------HH---HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--cc
Q 004862 445 P-----------ED---RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RF 508 (726)
Q Consensus 445 ~-----------~~---~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RF 508 (726)
. .. ...|+..|+.-. . ..++.||||||.+. .++++|++ ||
T Consensus 288 ~~R~~~~~~~~~~~~~~~~~lL~~ldg~~----~-------~~~ViVIaaTNrp~-------------~LD~AllRpGRf 343 (434)
T 4b4t_M 288 TKRFDSEKSGDREVQRTMLELLNQLDGFS----S-------DDRVKVLAATNRVD-------------VLDPALLRSGRL 343 (434)
T ss_dssp CCCSSGGGGTTHHHHHHHHHHHHHHTTSC----S-------SCSSEEEEECSSCC-------------CCCTTTCSTTSE
T ss_pred hccCCCCCCCchHHHHHHHHHHHHhhccC----C-------CCCEEEEEeCCCch-------------hcCHhHhcCCce
Confidence 1 11 234555554211 1 23578999999652 28899988 99
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMR 588 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~ 588 (726)
|..+.++.+. .+ -+..|++.|..... +.+.++ .+.|...
T Consensus 344 D~~I~i~lPd-~~----~R~~Il~~~~~~~~------------------------~~~dvd---l~~lA~~--------- 382 (434)
T 4b4t_M 344 DRKIEFPLPS-ED----SRAQILQIHSRKMT------------------------TDDDIN---WQELARS--------- 382 (434)
T ss_dssp EEEEECCCCC-HH----HHHHHHHHHHHHSC------------------------BCSCCC---HHHHHHH---------
T ss_pred eEEEEeCCcC-HH----HHHHHHHHHhcCCC------------------------CCCcCC---HHHHHHh---------
Confidence 9888876443 32 24444554433211 111121 1112221
Q ss_pred hhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhh
Q 004862 589 RQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTV 640 (726)
Q Consensus 589 ~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~ 640 (726)
.-.+|.++|.++++-|...|--+.+..|+.+|+.+|+.-+..
T Consensus 383 ----------t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 383 ----------TDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp ----------CSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSS
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 234788999999999888887778889999999999975543
No 45
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.2e-12 Score=142.87 Aligned_cols=190 Identities=17% Similarity=0.165 Sum_probs=114.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCcee---ecCCCeEEecccCcCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMV---LADGGVVCIDEFDKMR 444 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~---la~~gvl~iDEi~~~~ 444 (726)
-.+||+||||||||++|+++|..+...++.. +...+...... .++..+. ..+. .....|+||||+|.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v----~~s~l~sk~~G---ese~~ir-~~F~~A~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFS----PASGIVDKYIG---ESARIIR-EMFAYAKEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEE----EGGGTCCSSSS---HHHHHHH-HHHHHHHHSCSEEEEEECCCSSS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEE----ehhhhccccch---HHHHHHH-HHHHHHHhcCCceeeeecccccc
Confidence 4699999999999999999999888776631 11111111000 0000000 0011 1235699999999873
Q ss_pred HH--------------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcc--c
Q 004862 445 PE--------------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSR--F 508 (726)
Q Consensus 445 ~~--------------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~R--F 508 (726)
.. ....|+..|+... . ..++.||||||.+. .++++|+++ |
T Consensus 288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----~-------~~~vivI~ATNrp~-------------~LDpAllRpGRf 343 (437)
T 4b4t_L 288 GRRFSEGTSADREIQRTLMELLTQMDGFD----N-------LGQTKIIMATNRPD-------------TLDPALLRPGRL 343 (437)
T ss_dssp CCCSSSCCSSTTHHHHHHHHHHHHHHSSS----C-------TTSSEEEEEESSTT-------------SSCTTTTSTTSE
T ss_pred cccccCCCCcchHHHHHHHHHHHHhhccc----C-------CCCeEEEEecCCch-------------hhCHHHhCCCcc
Confidence 21 1234666665321 1 23578999999652 278899875 9
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMR 588 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~ 588 (726)
|..+.++.+. .+ -+..|++.|...... .+.++ .+.|...
T Consensus 344 D~~I~i~lPd-~~----~R~~Il~~~~~~~~~------------------------~~d~d---l~~lA~~--------- 382 (437)
T 4b4t_L 344 DRKVEIPLPN-EA----GRLEIFKIHTAKVKK------------------------TGEFD---FEAAVKM--------- 382 (437)
T ss_dssp EEEECCCCCC-HH----HHHHHHHHHHHTSCB------------------------CSCCC---HHHHHHT---------
T ss_pred ceeeecCCcC-HH----HHHHHHHHHhcCCCC------------------------CcccC---HHHHHHh---------
Confidence 9888775433 22 244455554432211 11111 1112111
Q ss_pred hhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhh
Q 004862 589 RQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTV 640 (726)
Q Consensus 589 ~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~ 640 (726)
.-.+|.++|.++++-|...|-.+.+..|+.+|+..|++-+..
T Consensus 383 ----------t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 383 ----------SDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp ----------CCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 234788999999999888887788889999999999975543
No 46
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.43 E-value=2.1e-14 Score=133.87 Aligned_cols=114 Identities=13% Similarity=0.211 Sum_probs=82.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.||||+||||||||++|++++..++ .+. .+.++... .. ...|.+..+++|++||||++.++++.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~---------~~~~~~~~----~~--~~~~~~~~a~~~~l~lDei~~l~~~~ 91 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT-PWV---------SPARVEYL----ID--MPMELLQKAEGGVLYVGDIAQYSRNI 91 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS-CEE---------CCSSTTHH----HH--CHHHHHHHTTTSEEEEEECTTCCHHH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC-CeE---------EechhhCC----hH--hhhhHHHhCCCCeEEEeChHHCCHHH
Confidence 7899999999999999999998776 222 11111111 00 12455566788999999999999999
Q ss_pred HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC-eeeEeccC
Q 004862 448 RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD-LIFIVKDI 517 (726)
Q Consensus 448 ~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd-li~~l~d~ 517 (726)
|..|+++|+++. +.++++|+|+|.+.. .. ... +.+.|++||. +.+.+|+.
T Consensus 92 q~~Ll~~l~~~~------------~~~~~iI~~tn~~~~------~~-~~~-~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 92 QTGITFIIGKAE------------RCRVRVIASCSYAAG------SD-GIS-CEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHHHHHHT------------TTTCEEEEEEEECTT------TC---C-HHHHHHHHSSSEEEEECCC
T ss_pred HHHHHHHHHhCC------------CCCEEEEEecCCCHH------HH-HhC-ccHHHHHHhcCcEEeCCCC
Confidence 999999999763 457899999996422 12 233 7889999976 56666653
No 47
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.43 E-value=5.4e-13 Score=137.08 Aligned_cols=229 Identities=16% Similarity=0.128 Sum_probs=115.7
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCccccccee
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASV 411 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~ 411 (726)
+.+|+|++.+|+.+.-.+........-.........++||+||||||||++|+++++.....++. .+... .+....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~--~~~~~~- 81 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEF--VEVIGG- 81 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTT--SSSSTT-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH--HhhccC-
Confidence 45789999998887433211000000000012334689999999999999999999877655442 11110 000000
Q ss_pred eecCCCchhhhccCceee---cCCCeEEecccCcCC------------HHHHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 412 IRDGSSREFYLEGGAMVL---ADGGVVCIDEFDKMR------------PEDRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 412 ~~~~~~~~~~~~~G~l~l---a~~gvl~iDEi~~~~------------~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
.....+ .+.+.. ...+++||||++.+. ...+..|.++++.-. ..+ -+.++.
T Consensus 82 -----~~~~~~-~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~~----~~~~~~ 147 (262)
T 2qz4_A 82 -----LGAARV-RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD----GMG----TTDHVI 147 (262)
T ss_dssp -----HHHHHH-HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH----TCC----TTCCEE
T ss_pred -----hhHHHH-HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh----CcC----CCCCEE
Confidence 000000 011111 125799999999983 333344444443200 000 134688
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHH
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLK 554 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~ 554 (726)
+|+|+|.+. .+++++++ ||+..+.+..++.++ -..+.++.+..
T Consensus 148 vi~~tn~~~-------------~ld~~l~~~~R~~~~i~i~~p~~~~-r~~il~~~~~~--------------------- 192 (262)
T 2qz4_A 148 VLASTNRAD-------------ILDGALMRPGRLDRHVFIDLPTLQE-RREIFEQHLKS--------------------- 192 (262)
T ss_dssp EEEEESCGG-------------GGGSGGGSTTSCCEEEECCSCCHHH-HHHHHHHHHHH---------------------
T ss_pred EEecCCChh-------------hcCHHHhcCCcCCeEEEeCCcCHHH-HHHHHHHHHHh---------------------
Confidence 999999641 25678888 999888776554332 22232222221
Q ss_pred HHHHHhHccCCCCCCHHH-HHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHH
Q 004862 555 RYIQYCRLECHPRLSESA-SAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNE 633 (726)
Q Consensus 555 ~yi~~a~~~~~p~ls~ea-~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ 633 (726)
.....+.+. .+.+... ....+.|.+.++++.|...|..+.+..|+.+|+.+
T Consensus 193 ---------~~~~~~~~~~~~~l~~~-------------------~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~ 244 (262)
T 2qz4_A 193 ---------LKLTQSSTFYSQRLAEL-------------------TPGFSGADIANICNEAALHAAREGHTSVHTLNFEY 244 (262)
T ss_dssp ---------TTCCBTHHHHHHHHHHT-------------------CTTCCHHHHHHHHHHHHTC--------CCBCCHHH
T ss_pred ---------CCCCcchhhHHHHHHHH-------------------CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 111122221 1222221 12357799999999998888878888999999999
Q ss_pred HHHHHhhh
Q 004862 634 AVRLFTVS 641 (726)
Q Consensus 634 ai~l~~~s 641 (726)
|+.-+..+
T Consensus 245 a~~~~~~~ 252 (262)
T 2qz4_A 245 AVERVLAG 252 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccC
Confidence 99765543
No 48
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.42 E-value=3.3e-12 Score=142.37 Aligned_cols=142 Identities=20% Similarity=0.188 Sum_probs=95.6
Q ss_pred CeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeee
Q 004862 433 GVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIF 512 (726)
Q Consensus 433 gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~ 512 (726)
+|++|||++.|+.+.+++|+.+||+.. ..+.|+++ |+....-.-.........++++++|||..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~-------------~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~~~~- 361 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSI-------------APIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRVMII- 361 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTT-------------CCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTEEEE-
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccC-------------CCEEEEec-CCccccccccccccccccCChhHHhhccee-
Confidence 699999999999999999999999642 12323333 441100000001222345889999999774
Q ss_pred EeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 513 IVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 513 ~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
.+.++. .+.+.+|+...-......+++++.+.|.++.
T Consensus 362 ~~~~~~-------------------------------~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a------------ 398 (456)
T 2c9o_A 362 RTMLYT-------------------------------PQEMKQIIKIRAQTEGINISEEALNHLGEIG------------ 398 (456)
T ss_dssp ECCCCC-------------------------------HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH------------
T ss_pred eCCCCC-------------------------------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc------------
Confidence 554443 2223333322111112358899998888762
Q ss_pred ccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 004862 593 ETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFT 639 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 639 (726)
..+++|....+++.|.++|.++++..|+.+||.+|+.++.
T Consensus 399 -------~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 399 -------TKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFY 438 (456)
T ss_dssp -------HHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSC
T ss_pred -------cCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhc
Confidence 1278999999999999999999999999999999998864
No 49
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.42 E-value=8.8e-13 Score=146.32 Aligned_cols=156 Identities=22% Similarity=0.198 Sum_probs=87.7
Q ss_pred cCCccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhC-CCcEEe-CCCCCCcccccc
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTA-PIAVYT-SGKGSSAAGLTA 409 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~-~~~~~~-~g~~~~~~gl~~ 409 (726)
+.+|.|++.+|+.+.-++..... .....+ ..+...++||+||||||||++|++++..+ ...++. .+. .+..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~-----~l~~ 206 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS-----DLVS 206 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH-----HHHh
Confidence 34689999999988765531100 000001 11233689999999999999999999988 333332 111 1111
Q ss_pred eeeecCCCchhhhccCceeecCCCeEEecccCcCCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEEE
Q 004862 410 SVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVL 478 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ii 478 (726)
...... .......-........+|+||||++.+.+ ..+..|+..|+.-. ..+.++.||
T Consensus 207 ~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI 275 (444)
T 2zan_A 207 KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVL 275 (444)
T ss_dssp -----C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEE
T ss_pred hhcchH-HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEE
Confidence 111100 00000000000123457999999999833 23445555554311 113568999
Q ss_pred EecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 479 AAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 479 aa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
+|||++. .+.++|++||+.++.++.+.
T Consensus 276 ~atn~~~-------------~ld~al~rRf~~~i~i~~P~ 302 (444)
T 2zan_A 276 GATNIPW-------------VLDSAIRRRFEKRIYIPLPE 302 (444)
T ss_dssp EEESCGG-------------GSCHHHHTTCCEEEECCCCC
T ss_pred ecCCCcc-------------ccCHHHHhhcceEEEeCCcC
Confidence 9999651 37889999999877765443
No 50
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=7.3e-12 Score=136.12 Aligned_cols=290 Identities=12% Similarity=0.077 Sum_probs=159.1
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhC-----------CCc-EEeCCCC
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTA-----------PIA-VYTSGKG 401 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~-----------~~~-~~~~g~~ 401 (726)
..++|++...+.+.-.+..... + ....+++|+||||||||++++.+++.+ ... ++.....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-----~---~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-----N---EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-----T---CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 5689998877766544432100 0 112589999999999999999998764 221 2221100
Q ss_pred C--Ccccccceeee----c--CCCc---hhhhccCce-eecCCC-eEEecccCcCCHHH-HHH-HHHHHhcceEeeeccc
Q 004862 402 S--SAAGLTASVIR----D--GSSR---EFYLEGGAM-VLADGG-VVCIDEFDKMRPED-RVA-IHEAMEQQTISIAKAG 466 (726)
Q Consensus 402 ~--~~~gl~~~~~~----~--~~~~---~~~~~~G~l-~la~~g-vl~iDEi~~~~~~~-~~~-L~~~me~~~i~i~~~g 466 (726)
. +...+...+.. . +..+ .-.+. ... .+...+ +++|||++.+.... +.. +...++..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-------- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYID-KIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-------- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHH-HHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS--------
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHH-HHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC--------
Confidence 0 00000000000 0 0000 00000 000 112233 99999999987642 455 55554321
Q ss_pred eEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccc
Q 004862 467 ITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKV 546 (726)
Q Consensus 467 ~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 546 (726)
.++.+|+++|... ....+.+++++||...+.+++...++ -..+..+.+.
T Consensus 163 ------~~~~iI~~t~~~~----------~~~~l~~~l~sr~~~~i~l~~l~~~~-~~~il~~~~~-------------- 211 (384)
T 2qby_B 163 ------ANISVIMISNDIN----------VRDYMEPRVLSSLGPSVIFKPYDAEQ-LKFILSKYAE-------------- 211 (384)
T ss_dssp ------SCEEEEEECSSTT----------TTTTSCHHHHHTCCCEEEECCCCHHH-HHHHHHHHHH--------------
T ss_pred ------cceEEEEEECCCc----------hHhhhCHHHHhcCCCeEEECCCCHHH-HHHHHHHHHH--------------
Confidence 4688999999531 11236788999998777776654222 1111111111
Q ss_pred cCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcc
Q 004862 547 SKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVA 626 (726)
Q Consensus 547 ~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V 626 (726)
. ..-...+++++.+.+.++.- ..++++|.+.++++.|...|. ....|
T Consensus 212 ------------~--~~~~~~~~~~~~~~i~~~~~-----------------~~~G~~r~a~~~l~~a~~~a~--~~~~i 258 (384)
T 2qby_B 212 ------------Y--GLIKGTYDDEILSYIAAISA-----------------KEHGDARKAVNLLFRAAQLAS--GGGII 258 (384)
T ss_dssp ------------H--TSCTTSCCSHHHHHHHHHHH-----------------TTCCCHHHHHHHHHHHHHHTT--SSSCC
T ss_pred ------------h--hcccCCcCHHHHHHHHHHHH-----------------hccCCHHHHHHHHHHHHHHhc--CCCcc
Confidence 0 00112578888888887631 246899999999999988886 56789
Q ss_pred cHHHHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcC---CCHHHHHHH
Q 004862 627 TENEVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMG---MNESIIRRA 703 (726)
Q Consensus 627 ~~~Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~~~~~ 703 (726)
+.+|+..|+.-...+.....- ..++..+...+ .++.. ...+..+ +......++..| ++...+.++
T Consensus 259 ~~~~v~~~~~~~~~~~~~~~~------~~l~~~~~~~l----~al~~-~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~ 326 (384)
T 2qby_B 259 RKEHVDKAIVDYEQERLIEAV------KALPFHYKLAL----RSLIE-SEDVMSA-HKMYTDLCNKFKQKPLSYRRFSDI 326 (384)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH------HSSCHHHHHHH----HHHHT-CCBHHHH-HHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHhcchHHHHH------HcCCHHHHHHH----HHHHH-hcccChH-HHHHHHHHHHcCCCCCCHHHHHHH
Confidence 999999998765432221111 12233333332 22221 1100001 112223344455 677999999
Q ss_pred HHHHHHCCeEEEe
Q 004862 704 LIIMHQRDEVEYK 716 (726)
Q Consensus 704 l~~l~~~g~i~~~ 716 (726)
++.|.+.|+|...
T Consensus 327 l~~L~~~gli~~~ 339 (384)
T 2qby_B 327 ISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHhCCCEEEE
Confidence 9999999999875
No 51
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=4.5e-12 Score=134.42 Aligned_cols=204 Identities=19% Similarity=0.237 Sum_probs=126.4
Q ss_pred hcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCc-----E-EeCCCCCCcc
Q 004862 332 IAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIA-----V-YTSGKGSSAA 405 (726)
Q Consensus 332 i~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~-----~-~~~g~~~~~~ 405 (726)
-+.+++|++.+++.+.-++..+. ..|+||+||||||||++++++++..... + ...+. ...
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~--~~~ 88 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGS------------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS--DER 88 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTC------------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT--CHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCC------------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc--ccC
Confidence 34578999999998887776551 1479999999999999999998764211 1 11100 000
Q ss_pred cccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCC
Q 004862 406 GLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPS 485 (726)
Q Consensus 406 gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~ 485 (726)
+. ...++. ...+ ...+.+..+..++++|||++.++++.++.|+..|++. +.++.+|.++|.+
T Consensus 89 ~~--~~~~~~-~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~- 150 (327)
T 1iqp_A 89 GI--NVIREK-VKEF-ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYS- 150 (327)
T ss_dssp HH--HTTHHH-HHHH-HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCG-
T ss_pred ch--HHHHHH-HHHH-HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCc-
Confidence 00 000000 0001 0112222245779999999999999999999999863 2356788888743
Q ss_pred CcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCC
Q 004862 486 GRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECH 565 (726)
Q Consensus 486 g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~ 565 (726)
..+.+++.+|+. .+.+.+.+ .+.+..++...-....
T Consensus 151 ------------~~l~~~l~sr~~-~~~~~~l~-------------------------------~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 151 ------------SKIIEPIQSRCA-IFRFRPLR-------------------------------DEDIAKRLRYIAENEG 186 (327)
T ss_dssp ------------GGSCHHHHHTEE-EEECCCCC-------------------------------HHHHHHHHHHHHHTTT
T ss_pred ------------cccCHHHHhhCc-EEEecCCC-------------------------------HHHHHHHHHHHHHhcC
Confidence 126788999987 44454433 2222222222111123
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 566 PRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 566 p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
..+++++.+.|..+ +++++|.+.++++.+... ...|+.+++..+..
T Consensus 187 ~~~~~~~~~~l~~~--------------------~~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 187 LELTEEGLQAILYI--------------------AEGDMRRAINILQAAAAL-----DKKITDENVFMVAS 232 (327)
T ss_dssp CEECHHHHHHHHHH--------------------HTTCHHHHHHHHHHHHTT-----CSEECHHHHHHHTT
T ss_pred CCCCHHHHHHHHHH--------------------CCCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 34888888888775 458999999998755422 34688888876653
No 52
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.37 E-value=9.9e-12 Score=135.87 Aligned_cols=162 Identities=15% Similarity=0.180 Sum_probs=94.7
Q ss_pred CCCeEEecccCcCCHH------------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhc
Q 004862 431 DGGVVCIDEFDKMRPE------------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNI 498 (726)
Q Consensus 431 ~~gvl~iDEi~~~~~~------------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~ 498 (726)
.+|++++||||++... .|.+|+++||...++. +- .... -.++.+|||+. |... . ..
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~-~~~d-~~~ilfI~~ga-----f~~~-~---~~ 317 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KH-GMVK-TDHILFIASGA-----FQVA-R---PS 317 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TT-EEEE-CTTCEEEEEEC-----CSSC-C---GG
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-cc-ceec-CCcEEEEeccc-----cccC-C---hh
Confidence 6789999999999643 6789999999766553 22 2222 24577888862 1100 0 01
Q ss_pred cCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhH-ccCCCCCCHHHHHHHH
Q 004862 499 DLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCR-LECHPRLSESASAKLR 577 (726)
Q Consensus 499 ~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~-~~~~p~ls~ea~~~l~ 577 (726)
.+.|+|++||++++.+++...++. ..|+ . .+. ...+++|..... ..+.-.++++|.+.|.
T Consensus 318 dlipel~~R~~i~i~l~~lt~~e~-~~Il----~---~~~-----------~~l~~q~~~~~~~~~~~l~~~~~al~~i~ 378 (444)
T 1g41_A 318 DLIPELQGRLPIRVELTALSAADF-ERIL----T---EPH-----------ASLTEQYKALMATEGVNIAFTTDAVKKIA 378 (444)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHHH-HHHH----H---SST-----------TCHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred hcchHHhcccceeeeCCCCCHHHH-HHHH----H---HHH-----------HhHHHHHHHHhcccCceEEECHHHHHHHH
Confidence 255889999999999988774331 2222 1 100 112445543322 2244469999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhC------CCcccHHHHHHHH
Q 004862 578 DQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKL------SHVATENEVNEAV 635 (726)
Q Consensus 578 ~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~------~~~V~~~Dv~~ai 635 (726)
+.+.+.... .-...+|.|++++.....-+..+. .-.|+.++|.+.+
T Consensus 379 ~~a~~~~~~------------t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l 430 (444)
T 1g41_A 379 EAAFRVNEK------------TENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADAL 430 (444)
T ss_dssp HHHHHHHHH------------SCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHH
T ss_pred HHHHHhccC------------CccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhc
Confidence 887554222 123678988888874432221111 1136676666544
No 53
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.37 E-value=2.9e-12 Score=142.91 Aligned_cols=216 Identities=23% Similarity=0.270 Sum_probs=123.3
Q ss_pred CCccCchhHHHHHHHHH--hCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccccce
Q 004862 334 PSIFGHDDVKKAVSCLL--FGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTAS 410 (726)
Q Consensus 334 p~I~G~~~~k~aill~L--~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~ 410 (726)
.+|.|++.+|..+.-.. +.....-..-| .+-..++||+||||||||+||++++..+...++. ++.. +.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg--~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~-----~~-- 101 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD-----FV-- 101 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTS--CCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGG-----GT--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhH-----HH--
Confidence 45777777766553221 12211100111 1222459999999999999999999988755432 2111 10
Q ss_pred eeecCCCchhhhc-cCceeec---CCCeEEecccCcCCHH--------------HHHHHHHHHhcceEeeeccceEEEee
Q 004862 411 VIRDGSSREFYLE-GGAMVLA---DGGVVCIDEFDKMRPE--------------DRVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 411 ~~~~~~~~~~~~~-~G~l~la---~~gvl~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
+...+..... ...+..+ ..+++|||||+.+... ....|+..|+.+. .+
T Consensus 102 ---~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~ 167 (499)
T 2dhr_A 102 ---EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KD 167 (499)
T ss_dssp ---SSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SS
T ss_pred ---HhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cC
Confidence 0001111000 0011112 2479999999987531 2234555554322 13
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEE 550 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 550 (726)
..+.++|++|.+. .+.++|++ |||..+.+..+..++ +..|+..|....
T Consensus 168 ~~viviAatn~p~-------------~LD~aLlr~gRfdr~i~i~~Pd~~~-----R~~IL~~~~~~~------------ 217 (499)
T 2dhr_A 168 TAIVVMAATNRPD-------------ILDPALLRPGRFDRQIAIDAPDVKG-----REQILRIHARGK------------ 217 (499)
T ss_dssp CCCEEEECCSCGG-------------GSCTTTSSTTSSCCEEECCCCCHHH-----HHHHHHHTTSSS------------
T ss_pred ccEEEEEecCChh-------------hcCcccccccccceEEecCCCCHHH-----HHHHHHHHHhcC------------
Confidence 3578999999641 17788887 899888775544222 333444432110
Q ss_pred HHHHHHHHHhHccCCCCCCHHH-HHHHHHHHHHHHHHHhhhhcccCCCCCccCCh-hHHHHHHHHHHHHHhhhCCCcccH
Q 004862 551 NWLKRYIQYCRLECHPRLSESA-SAKLRDQYVQIRKDMRRQANETGEAAPIPITV-RQLEAIVRLSEALAKMKLSHVATE 628 (726)
Q Consensus 551 ~~L~~yi~~a~~~~~p~ls~ea-~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~-R~L~~lirla~a~A~l~~~~~V~~ 628 (726)
.+++++ ...|.. .|+++. |+|+++++.|...|..+.+..|+.
T Consensus 218 ----------------~l~~dv~l~~lA~--------------------~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~ 261 (499)
T 2dhr_A 218 ----------------PLAEDVDLALLAK--------------------RTPGFVGADLENLLNEAALLAAREGRRKITM 261 (499)
T ss_dssp ----------------CCCCSSTTHHHHT--------------------TSCSCCHHHHHHHHHHHHHHHTTTCCSSCCS
T ss_pred ----------------CCChHHHHHHHHH--------------------hcCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Confidence 122222 222221 477776 999999999988887777788999
Q ss_pred HHHHHHHHHH
Q 004862 629 NEVNEAVRLF 638 (726)
Q Consensus 629 ~Dv~~ai~l~ 638 (726)
+|+.+|+.-.
T Consensus 262 ~dl~~al~~v 271 (499)
T 2dhr_A 262 KDLEEAADRV 271 (499)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 54
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.37 E-value=6.9e-12 Score=132.49 Aligned_cols=203 Identities=16% Similarity=0.173 Sum_probs=124.6
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCC-C-----cEEeCCCCCCccc
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAP-I-----AVYTSGKGSSAAG 406 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~-~-----~~~~~g~~~~~~g 406 (726)
+.+++|++.+++.+.-++..+ ...|+||+||||||||++++++++.+. . -+....... .+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--~~ 81 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE--RG 81 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST--TC
T ss_pred HHHHhCCHHHHHHHHHHHhCC------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc--cC
Confidence 345889999988877665443 114799999999999999999987641 1 011111100 00
Q ss_pred ccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCC
Q 004862 407 LTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSG 486 (726)
Q Consensus 407 l~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g 486 (726)
. ...++. ...+. ....+..+..++++|||++.++.+.++.|+..|++. +.++.+|+++|.+
T Consensus 82 ~--~~~~~~-~~~~~-~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~-- 142 (319)
T 2chq_A 82 I--DVVRHK-IKEFA-RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYV-- 142 (319)
T ss_dssp T--TTSSHH-HHHHH-HSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS-------------SSSEEEEEEESCG--
T ss_pred h--HHHHHH-HHHHH-hcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCh--
Confidence 0 000000 00010 011111244679999999999999999999888752 3467888888853
Q ss_pred cCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCC
Q 004862 487 RYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHP 566 (726)
Q Consensus 487 ~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p 566 (726)
..+.+++.+|+. .+.+.+++.+ .+..++...-.....
T Consensus 143 -----------~~l~~~l~sr~~-~i~~~~~~~~-------------------------------~~~~~l~~~~~~~~~ 179 (319)
T 2chq_A 143 -----------SRIIEPIQSRCA-VFRFKPVPKE-------------------------------AMKKRLLEICEKEGV 179 (319)
T ss_dssp -----------GGSCHHHHTTCE-EEECCCCCHH-------------------------------HHHHHHHHHHHTTCC
T ss_pred -----------hhcchHHHhhCe-EEEecCCCHH-------------------------------HHHHHHHHHHHHcCC
Confidence 136789999997 4555444422 222222211111233
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 567 RLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 567 ~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
.+++++.+.|... +++++|.+.++++.+.. . ...|+.+|+..++.
T Consensus 180 ~i~~~~l~~l~~~--------------------~~G~~r~~~~~l~~~~~---~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 180 KITEDGLEALIYI--------------------SGGDFRKAINALQGAAA---I--GEVVDADTIYQITA 224 (319)
T ss_dssp CBCHHHHHHHHHT--------------------TTTCHHHHHHHHHHHHH---S--SSCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHH---c--CCCCCHHHHHHHHC
Confidence 5889998888753 67899999988865432 1 45799999887653
No 55
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.36 E-value=3e-11 Score=128.35 Aligned_cols=208 Identities=16% Similarity=0.135 Sum_probs=124.0
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCccccccee
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASV 411 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~ 411 (726)
+.+++|++.+++.+.-++..+. ....+|+.||||||||++++++++.....++. .+... + ...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----------~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~---~--~~~ 88 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----------IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC---K--IDF 88 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----------CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC---C--HHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----------CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc---C--HHH
Confidence 4568899999988887777551 11346777889999999999999888654432 21110 0 000
Q ss_pred eecCCCchhhhccCceeecCCCeEEecccCcCC-HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCC
Q 004862 412 IRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR-PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDD 490 (726)
Q Consensus 412 ~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~-~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~ 490 (726)
.++. -..+. ...-.....++++|||++.++ .+.++.|+..|+.. +.++.+|+++|++.
T Consensus 89 i~~~-~~~~~--~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-------------~~~~~iI~~~n~~~----- 147 (324)
T 3u61_B 89 VRGP-LTNFA--SAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-------------SSNCSIIITANNID----- 147 (324)
T ss_dssp HHTH-HHHHH--HBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-------------GGGCEEEEEESSGG-----
T ss_pred HHHH-HHHHH--hhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc-----
Confidence 1100 00000 000012256799999999999 99999999999863 24578999999631
Q ss_pred ccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCH
Q 004862 491 LKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSE 570 (726)
Q Consensus 491 ~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ 570 (726)
.+.++|.+||. ++.+..+..++ -..+.+.++.. +++. +.. -...+++
T Consensus 148 --------~l~~~l~sR~~-~i~~~~~~~~e-~~~il~~~~~~-------------------l~~~---~~~-~~~~~~~ 194 (324)
T 3u61_B 148 --------GIIKPLQSRCR-VITFGQPTDED-KIEMMKQMIRR-------------------LTEI---CKH-EGIAIAD 194 (324)
T ss_dssp --------GSCTTHHHHSE-EEECCCCCHHH-HHHHHHHHHHH-------------------HHHH---HHH-HTCCBSC
T ss_pred --------ccCHHHHhhCc-EEEeCCCCHHH-HHHHHHHHHHH-------------------HHHH---HHH-cCCCCCc
Confidence 37899999996 45555444222 22222222221 1111 111 1234777
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 571 -SASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 571 -ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
++.+.|..+ +++++|++.+.+..+. ....|+.+++.++..
T Consensus 195 ~~~~~~l~~~--------------------~~gd~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 195 MKVVAALVKK--------------------NFPDFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHHHH--------------------TCSCTTHHHHHHHHHG------GGTCBCC--------
T ss_pred HHHHHHHHHh--------------------CCCCHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 888888775 6789999888886543 245689988887654
No 56
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.35 E-value=2.4e-12 Score=142.74 Aligned_cols=218 Identities=21% Similarity=0.217 Sum_probs=122.7
Q ss_pred CCccCchhHHHHHHHHH--hCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCccccccee
Q 004862 334 PSIFGHDDVKKAVSCLL--FGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASV 411 (726)
Q Consensus 334 p~I~G~~~~k~aill~L--~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~ 411 (726)
.+|.|++.+|+.+.-.+ +.....-..-| .+-..++||+||||||||++|++++......++.. +++.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g--~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i---------s~~~ 84 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIG--ARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHI---------SGSD 84 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTT--CCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE---------EGGG
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcC--CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC---------CHHH
Confidence 35788888776654322 11111000011 12234699999999999999999998776554421 1110
Q ss_pred eecCCCchhh-hccCceeec---CCCeEEecccCcCCHH--------------HHHHHHHHHhcceEeeeccceEEEeeC
Q 004862 412 IRDGSSREFY-LEGGAMVLA---DGGVVCIDEFDKMRPE--------------DRVAIHEAMEQQTISIAKAGITTVLNS 473 (726)
Q Consensus 412 ~~~~~~~~~~-~~~G~l~la---~~gvl~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~~~g~~~~l~~ 473 (726)
......+.-. ...+.+..+ ...|+||||+|.+... .+..|+..|+.-. -+.
T Consensus 85 ~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----------~~~ 153 (476)
T 2ce7_A 85 FVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----------SKE 153 (476)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-----------GGG
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----------CCC
Confidence 0000000000 000112222 2459999999998653 3456666665311 134
Q ss_pred ceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHH
Q 004862 474 RTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEEN 551 (726)
Q Consensus 474 ~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 551 (726)
++.||||||.+. .+.+++++ |||..+.+..+..++ +..|+..+....+
T Consensus 154 ~viVIaaTn~~~-------------~Ld~allR~gRFd~~i~i~~Pd~~~-----R~~Il~~~~~~~~------------ 203 (476)
T 2ce7_A 154 GIIVMAATNRPD-------------ILDPALLRPGRFDKKIVVDPPDMLG-----RKKILEIHTRNKP------------ 203 (476)
T ss_dssp TEEEEEEESCGG-------------GSCGGGGSTTSSCEEEECCCCCHHH-----HHHHHHHHHTTSC------------
T ss_pred CEEEEEecCChh-------------hhchhhcccCcceeEeecCCCCHHH-----HHHHHHHHHHhCC------------
Confidence 688999999641 25677776 999888776543222 2223433322110
Q ss_pred HHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCCh-hHHHHHHHHHHHHHhhhCCCcccHHH
Q 004862 552 WLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITV-RQLEAIVRLSEALAKMKLSHVATENE 630 (726)
Q Consensus 552 ~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~-R~L~~lirla~a~A~l~~~~~V~~~D 630 (726)
+.+.++ ...|.. .|++.. |+|+++++.|...|..+....|+.+|
T Consensus 204 ------------l~~~v~---l~~la~--------------------~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~d 248 (476)
T 2ce7_A 204 ------------LAEDVN---LEIIAK--------------------RTPGFVGADLENLVNEAALLAAREGRDKITMKD 248 (476)
T ss_dssp ------------BCTTCC---HHHHHH--------------------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred ------------Ccchhh---HHHHHH--------------------hcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 111111 222221 366655 89999999888888777778899999
Q ss_pred HHHHHHHH
Q 004862 631 VNEAVRLF 638 (726)
Q Consensus 631 v~~ai~l~ 638 (726)
+.+|+.-.
T Consensus 249 l~~al~~v 256 (476)
T 2ce7_A 249 FEEAIDRV 256 (476)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998643
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.34 E-value=1e-11 Score=125.30 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=114.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
.++||+||||||||+++++++..+....+ ...-+.+....+..... +. .+...++++|||++.++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~----~~~~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELER------RSFYIPLGIHASISTAL--LE----GLEQFDLICIDDVDAVAGHP 120 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEEGGGGGGSCGGG--GT----TGGGSSEEEEETGGGGTTCH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC------eEEEEEHHHHHHHHHHH--HH----hccCCCEEEEeccccccCCH
Confidence 68999999999999999999876542100 00001111000000000 00 12456899999999998766
Q ss_pred --HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEeccCCChhhh
Q 004862 448 --RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKDIRMYNQD 523 (726)
Q Consensus 448 --~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d~~~~~~d 523 (726)
+..|+.+++... .. ...++|.++|.....+. .+.+++.+||+ .++.+..+..++..
T Consensus 121 ~~~~~l~~~l~~~~----~~-------~~~~ii~~~~~~~~~~~---------~~~~~l~~r~~~~~~i~l~~~~~~~~~ 180 (242)
T 3bos_A 121 LWEEAIFDLYNRVA----EQ-------KRGSLIVSASASPMEAG---------FVLPDLVSRMHWGLTYQLQPMMDDEKL 180 (242)
T ss_dssp HHHHHHHHHHHHHH----HH-------CSCEEEEEESSCTTTTT---------CCCHHHHHHHHHSEEEECCCCCGGGHH
T ss_pred HHHHHHHHHHHHHH----Hc-------CCCeEEEEcCCCHHHHH---------HhhhhhhhHhhcCceEEeCCCCHHHHH
Confidence 788888877421 11 12346666664322111 24478999996 77777666543311
Q ss_pred HHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCC
Q 004862 524 KLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPIT 603 (726)
Q Consensus 524 ~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t 603 (726)
.+ ++.++. . ....+++++.+.|..+ ++++
T Consensus 181 -~~--------------------------l~~~~~---~-~~~~~~~~~~~~l~~~--------------------~~g~ 209 (242)
T 3bos_A 181 -AA--------------------------LQRRAA---M-RGLQLPEDVGRFLLNR--------------------MARD 209 (242)
T ss_dssp -HH--------------------------HHHHHH---H-TTCCCCHHHHHHHHHH--------------------TTTC
T ss_pred -HH--------------------------HHHHHH---H-cCCCCCHHHHHHHHHH--------------------ccCC
Confidence 11 111111 0 1235888998888775 5789
Q ss_pred hhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 604 VRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 604 ~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
+|++.++++.+.+.|.... ..|+.+|+.+++.
T Consensus 210 ~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 210 LRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 9999999999888885554 5699999998874
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.34 E-value=3.3e-12 Score=142.70 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=92.4
Q ss_pred CCccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
.+|.|++..++.+.-++..... ...-.........++||+||||||||++|++++..+...++. ++++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~---------vn~~~l 274 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL---------INGPEI 274 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE---------EEHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE---------EEchHh
Confidence 4689998887776544421000 000000001233689999999999999999999988655442 222111
Q ss_pred ecCCCch-hhhccCceeecC---CCeEEecccCcCCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 413 RDGSSRE-FYLEGGAMVLAD---GGVVCIDEFDKMRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 413 ~~~~~~~-~~~~~G~l~la~---~gvl~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
.....++ .....+.+..+. .+++||||||.+.+ ..+..|+..|+... .+.++.|
T Consensus 275 ~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~v 343 (489)
T 3hu3_A 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIV 343 (489)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEE
T ss_pred hhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEE
Confidence 1110111 111122233333 35999999976644 56788999998532 1346899
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCCh
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMY 520 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~ 520 (726)
|||||++. .+.+++.+ ||+..+.+..++.+
T Consensus 344 IaaTn~~~-------------~Ld~al~r~gRf~~~i~i~~P~~~ 375 (489)
T 3hu3_A 344 MAATNRPN-------------SIDPALRRFGRFDREVDIGIPDAT 375 (489)
T ss_dssp EEEESCGG-------------GBCGGGGSTTSSCEEEECCCCCHH
T ss_pred EEecCCcc-------------ccCHHHhCCCcCceEEEeCCCCHH
Confidence 99999641 26788888 99988877665533
No 59
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3.4e-11 Score=130.44 Aligned_cols=297 Identities=13% Similarity=0.059 Sum_probs=161.5
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCC------Cc-EEeCCCC-CCcc
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAP------IA-VYTSGKG-SSAA 405 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~------~~-~~~~g~~-~~~~ 405 (726)
..++|++...+.+.-.+..... -....+++|+||||||||++++.+++... .. ++..+.. .+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 91 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPY 91 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHH
Confidence 5688998888877766543210 01125899999999999999999987652 22 2222110 0000
Q ss_pred cccceeee-----cCCCc----h-hhhccCceee-cCCCeEEecccCcCC----HHHHHHHHHHHhcceEeeeccceEEE
Q 004862 406 GLTASVIR-----DGSSR----E-FYLEGGAMVL-ADGGVVCIDEFDKMR----PEDRVAIHEAMEQQTISIAKAGITTV 470 (726)
Q Consensus 406 gl~~~~~~-----~~~~~----~-~~~~~G~l~l-a~~gvl~iDEi~~~~----~~~~~~L~~~me~~~i~i~~~g~~~~ 470 (726)
.+...+.. .+..+ . +..-...+.. ....+++|||++.+. .+....|+..++..
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------ 159 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------ 159 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------------
Confidence 00000000 00000 0 0000000000 113489999999985 44555666666532
Q ss_pred eeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCe-eeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCC
Q 004862 471 LNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL-IFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKE 549 (726)
Q Consensus 471 l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl-i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 549 (726)
-+.++.+|+++|... ....+.+++.+||.. .+.+++...++ -..+..
T Consensus 160 ~~~~~~~I~~~~~~~----------~~~~~~~~~~~r~~~~~i~l~~l~~~~-~~~il~--------------------- 207 (386)
T 2qby_A 160 NKSKISFIGITNDVK----------FVDLLDPRVKSSLSEEEIIFPPYNAEE-LEDILT--------------------- 207 (386)
T ss_dssp CC--EEEEEEESCGG----------GGGGCTTHHHHTTTTEEEEECCCCHHH-HHHHHH---------------------
T ss_pred CCCeEEEEEEECCCC----------hHhhhCHHHhccCCCeeEEeCCCCHHH-HHHHHH---------------------
Confidence 123567888888421 112356778889863 56665554222 111111
Q ss_pred HHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHH
Q 004862 550 ENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATEN 629 (726)
Q Consensus 550 ~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~ 629 (726)
.++... .-...+++++.+.+..+.. ...+++|.+..+++.+...|.......|+.+
T Consensus 208 -----~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~ 263 (386)
T 2qby_A 208 -----KRAQMA--FKPGVLPDNVIKLCAALAA-----------------REHGDARRALDLLRVSGEIAERMKDTKVKEE 263 (386)
T ss_dssp -----HHHHHH--BCSSCSCHHHHHHHHHHHH-----------------HTTCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred -----HHHHhh--ccCCCCCHHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHHHHHHhcCCCccCHH
Confidence 111100 0123578888888877621 1128899999999999888887778899999
Q ss_pred HHHHHHHHHhhhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHH----HHHcCCC---HHHHH
Q 004862 630 EVNEAVRLFTVSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPI-GNQISERRLIDD----LTRMGMN---ESIIR 701 (726)
Q Consensus 630 Dv~~ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~~~~g~~---~~~~~ 701 (726)
|+..|+.-...+.....- ..++..+.. ++.++...... ...++.+++++. ++..|.+ ...+.
T Consensus 264 ~v~~a~~~~~~~~~~~~~------~~l~~~~~~----il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~ 333 (386)
T 2qby_A 264 YVYMAKEEIERDRVRDII------LTLPFHSKL----VLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVS 333 (386)
T ss_dssp HHHHHHHHHHHHHHHHHH------HTSCHHHHH----HHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHH
T ss_pred HHHHHHHHHhhchHHHHH------HcCCHHHHH----HHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 999998765533221110 112233332 33333322211 124556555333 3334544 48999
Q ss_pred HHHHHHHHCCeEEEe
Q 004862 702 RALIIMHQRDEVEYK 716 (726)
Q Consensus 702 ~~l~~l~~~g~i~~~ 716 (726)
..++.|.+.|+|...
T Consensus 334 ~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 334 DIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHTSEEEE
T ss_pred HHHHHHHhCCCEEEE
Confidence 999999999999864
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.31 E-value=2e-11 Score=122.83 Aligned_cols=210 Identities=20% Similarity=0.186 Sum_probs=124.1
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcc-------
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAA------- 405 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~------- 405 (726)
..+++|++.+++.+.-++..+ +....++|+||||+|||++++.+++................
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 446899999999888777654 11247999999999999999999876533211000000000
Q ss_pred -cccce-eeecCCCchh------hhcc-C-ceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 406 -GLTAS-VIRDGSSREF------YLEG-G-AMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 406 -gl~~~-~~~~~~~~~~------~~~~-G-~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
+.... ...+...... .+.. . ........+++|||++.++++.+..|+..+++. +.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~~ 157 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHV 157 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTE
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-------------CCce
Confidence 00000 0000000000 0000 0 001123469999999999999999999999752 3457
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
.+|+++|.+ ..+.+++++|+ ..+.+++... +.+..
T Consensus 158 ~~i~~t~~~-------------~~~~~~l~~r~-~~i~l~~l~~-------------------------------~e~~~ 192 (250)
T 1njg_A 158 KFLLATTDP-------------QKLPVTILSRC-LQFHLKALDV-------------------------------EQIRH 192 (250)
T ss_dssp EEEEEESCG-------------GGSCHHHHTTS-EEEECCCCCH-------------------------------HHHHH
T ss_pred EEEEEeCCh-------------HhCCHHHHHHh-hhccCCCCCH-------------------------------HHHHH
Confidence 788888742 13567888886 4454544432 22222
Q ss_pred HHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 556 YIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 556 yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
++...-......+++++.+.|.++ .++++|.+.++++.+.+.+ ...|+.+|+.+++
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~l~~~--------------------~~G~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 193 QLEHILNEEHIAHEPRALQLLARA--------------------AEGSLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHH--------------------HTTCHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 221110012335788888877765 2479999999998764333 4589999999875
No 61
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.30 E-value=5.8e-12 Score=132.56 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=87.7
Q ss_pred CccCchhHHHHHHHHHhCCCc-ccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee
Q 004862 335 SIFGHDDVKKAVSCLLFGGSR-KNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 413 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~-~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~ 413 (726)
+|.|++.+|+.+.-++..... ...-.....+...++||+||||||||++|++++..+...++.. +...+......
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v----~~~~l~~~~~g 91 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI----KGPELLTMWFG 91 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE----CHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEE----EhHHHHhhhcC
Confidence 478888887776544421000 0000000012236899999999999999999999887554421 01111110000
Q ss_pred cCCCchhhhccCceee---cCCCeEEecccCcCCHH--------------HHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 414 DGSSREFYLEGGAMVL---ADGGVVCIDEFDKMRPE--------------DRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 414 ~~~~~~~~~~~G~l~l---a~~gvl~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
..... ..+.+.. ...+++||||++.+.+. .+..|+..|+.-. -+.++.
T Consensus 92 ~~~~~----~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~ 156 (301)
T 3cf0_A 92 ESEAN----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVF 156 (301)
T ss_dssp TCTTH----HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEE
T ss_pred chHHH----HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEE
Confidence 00000 0011111 23479999999987544 3567788776321 134689
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCC
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRM 519 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~ 519 (726)
||||||.+. .+.+++++ ||+..+.++.+..
T Consensus 157 vi~atn~~~-------------~ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 157 IIGATNRPD-------------IIDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp EEEEESCGG-------------GSCGGGGSTTSSCEEEECCCCCH
T ss_pred EEEecCCcc-------------ccChHHhcCCccceEEecCCcCH
Confidence 999999641 26788888 9998887765543
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.30 E-value=6.1e-13 Score=137.41 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=118.7
Q ss_pred cCCccCchhHHHHHHHHHhC--CCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccce
Q 004862 333 APSIFGHDDVKKAVSCLLFG--GSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTAS 410 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~--~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~ 410 (726)
+.+|+|++.+++.+.-.+.. .... . .....+...++||+||||||||++|++++..+...++..... .+...
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~----~~~~~ 83 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPER-Y-ANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGS----SFIEM 83 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHH-H-HHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSC----TTTTS
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHH-H-HHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechH----HHHHh
Confidence 34678888877776543321 0000 0 000011224699999999999999999998765543321110 01000
Q ss_pred eeecCCCchhhhccCceee---cCCCeEEecccCcCCHHH---------------HHHHHHHHhcceEeeeccceEEEee
Q 004862 411 VIRDGSSREFYLEGGAMVL---ADGGVVCIDEFDKMRPED---------------RVAIHEAMEQQTISIAKAGITTVLN 472 (726)
Q Consensus 411 ~~~~~~~~~~~~~~G~l~l---a~~gvl~iDEi~~~~~~~---------------~~~L~~~me~~~i~i~~~g~~~~l~ 472 (726)
.... +.. ...+.+.. ...+++||||++.+.... +..|+..|+.-. ..+
T Consensus 84 ~~~~---~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~ 149 (268)
T 2r62_A 84 FVGL---GAS-RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----------SEN 149 (268)
T ss_dssp CSSS---CSS-SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS----------CSC
T ss_pred hcch---HHH-HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc----------cCC
Confidence 0000 000 00111111 134799999999997642 223333333210 113
Q ss_pred CceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCH
Q 004862 473 SRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEE 550 (726)
Q Consensus 473 ~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 550 (726)
.++.||+|+|.+. .+++++++ ||+..+.+..+..++. ..++..+.....
T Consensus 150 ~~v~vi~ttn~~~-------------~ld~~l~r~~Rf~~~i~i~~p~~~~r-----~~il~~~~~~~~----------- 200 (268)
T 2r62_A 150 APVIVLAATNRPE-------------ILDPALMRPGRFDRQVLVDKPDFNGR-----VEILKVHIKGVK----------- 200 (268)
T ss_dssp SCCEEEECBSCCT-------------TSCGGGGSSSSSCCCCBCCCCCTTTH-----HHHHHHHTSSSC-----------
T ss_pred CCEEEEEecCCch-------------hcCHhHcCCCCCCeEEEecCcCHHHH-----HHHHHHHHhcCC-----------
Confidence 4588999999652 26678888 9998777766554332 122222211100
Q ss_pred HHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHH
Q 004862 551 NWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENE 630 (726)
Q Consensus 551 ~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~D 630 (726)
+.+..+ .+.|... ....+.|++.++++.|...|..+.+..|+.+|
T Consensus 201 -------------~~~~~~---~~~la~~-------------------~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~ 245 (268)
T 2r62_A 201 -------------LANDVN---LQEVAKL-------------------TAGLAGADLANIINEAALLAGRNNQKEVRQQH 245 (268)
T ss_dssp -------------CCSSCC---TTTTTSS-------------------SCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHH
T ss_pred -------------CCCccC---HHHHHHH-------------------cCCCCHHHHHHHHHHHHHHHHHhccCCcCHHH
Confidence 000110 1111110 12245699999999999888777788999999
Q ss_pred HHHHHHHH
Q 004862 631 VNEAVRLF 638 (726)
Q Consensus 631 v~~ai~l~ 638 (726)
+.+|+.-.
T Consensus 246 ~~~a~~~~ 253 (268)
T 2r62_A 246 LKEAVERG 253 (268)
T ss_dssp HHTSCTTC
T ss_pred HHHHHHHH
Confidence 99877543
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.28 E-value=3.2e-11 Score=134.66 Aligned_cols=221 Identities=13% Similarity=0.122 Sum_probs=119.7
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~~ 412 (726)
..|+|++...+.++-.|... ...|+||+||||||||+++++++..+...... ...+.....+.++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred CCccCcHHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--
Confidence 45899999888877777543 12689999999999999999999875321110 0001111112221
Q ss_pred ecCCCchhhhcc----CceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcC
Q 004862 413 RDGSSREFYLEG----GAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRY 488 (726)
Q Consensus 413 ~~~~~~~~~~~~----G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~ 488 (726)
....|++.... +.+..+.++|+||| ...+.++.|+.+|+.+ ++++|+|||+..
T Consensus 246 -~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g---------------~v~vI~at~~~e--- 302 (468)
T 3pxg_A 246 -TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDE--- 302 (468)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTT---
T ss_pred -ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC---------------CEEEEecCCHHH---
Confidence 00112221100 00112357899999 4556667787777644 467999999742
Q ss_pred CCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCC-C
Q 004862 489 DDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHP-R 567 (726)
Q Consensus 489 ~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p-~ 567 (726)
......++++|.+||+. +.+..+ +.+.-..|.++++..+... ....++.+.+.....++..++.- .
T Consensus 303 -----~~~~~~~~~al~~Rf~~-i~v~~p-~~e~~~~iL~~~~~~~~~~------~~~~i~~~al~~l~~~s~~~~~~~~ 369 (468)
T 3pxg_A 303 -----YRKYIEKDAALERRFQP-IQVDQP-SVDESIQILQGLRDRYEAH------HRVSITDDAIEAAVKLSDRYISDRF 369 (468)
T ss_dssp -----THHHHTTCSHHHHSEEE-EECCCC-CHHHHHHHHHHTTTTSGGG------SSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred -----HHHHhhcCHHHHHhCcc-ceeCCC-CHHHHHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHHHHHHhccCc
Confidence 11234578999999985 445444 3332333333333221111 11356777777777776664432 4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHH
Q 004862 568 LSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLS 614 (726)
Q Consensus 568 ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla 614 (726)
+++.+.+.+...-...|.. ...+|.++++|++.+...
T Consensus 370 lp~~ai~ll~~a~~~~~~~----------~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 370 LPDKAIDLIDEAGSKVRLR----------SFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp TTHHHHHHHHHHHHHHHHH----------TTSCCSSTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhc----------cCCCchHHHHHHHHHHHH
Confidence 5667777776654333321 125788888887777543
No 64
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=4.6e-11 Score=127.92 Aligned_cols=210 Identities=17% Similarity=0.212 Sum_probs=122.5
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcE----EeCCCCCCccccc
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAV----YTSGKGSSAAGLT 408 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~----~~~g~~~~~~gl~ 408 (726)
+.+++|++.+++.+..++-.|.. .|+||+||||||||++++++++.+.... +.....+...+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~------------~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~- 90 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKL------------PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI- 90 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCC------------CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH-
T ss_pred HHHhcCcHHHHHHHHHHHhcCCC------------ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH-
Confidence 45688999999998888876611 4799999999999999999988753210 100000000000
Q ss_pred ceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcC
Q 004862 409 ASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRY 488 (726)
Q Consensus 409 ~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~ 488 (726)
..+++. -..+. ..+....+...+++|||++.|+.+.+++|+..||+. +..+.+|.++|.+
T Consensus 91 -~~ir~~-i~~~~-~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~n~~---- 150 (340)
T 1sxj_C 91 -DVVRNQ-IKDFA-STRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-------------TKNTRFCVLANYA---- 150 (340)
T ss_dssp -HHHHTH-HHHHH-HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCG----
T ss_pred -HHHHHH-HHHHH-hhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-------------CCCeEEEEEecCc----
Confidence 000100 00010 111111234569999999999999999999999863 2345677778843
Q ss_pred CCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCC
Q 004862 489 DDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRL 568 (726)
Q Consensus 489 ~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~l 568 (726)
..+.+++.+|+. .+.+.+.+.. .+.+++...-..-...+
T Consensus 151 ---------~~i~~~i~sR~~-~~~~~~l~~~-------------------------------~~~~~l~~~~~~~~~~i 189 (340)
T 1sxj_C 151 ---------HKLTPALLSQCT-RFRFQPLPQE-------------------------------AIERRIANVLVHEKLKL 189 (340)
T ss_dssp ---------GGSCHHHHTTSE-EEECCCCCHH-------------------------------HHHHHHHHHHHTTTCCB
T ss_pred ---------cccchhHHhhce-eEeccCCCHH-------------------------------HHHHHHHHHHHHcCCCC
Confidence 137789999996 4545444421 12222221110012247
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 569 SESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 569 s~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
++++.+.+..+ ..++.|.+.++++.+...+.-...+.|+.+++.+++.
T Consensus 190 ~~~~~~~i~~~--------------------s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 190 SPNAEKALIEL--------------------SNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp CHHHHHHHHHH--------------------HTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred CHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 88888877765 2367787777775432222111123688888876653
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.24 E-value=7.4e-10 Score=119.66 Aligned_cols=210 Identities=18% Similarity=0.150 Sum_probs=125.0
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC----CC--------
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS----GK-------- 400 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~----g~-------- 400 (726)
+.+++|++.+++.+.-++..+ +....+||+||||||||++++++++......... +.
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 456899999998888777554 1124589999999999999999987654221100 00
Q ss_pred ---CCCcccccceeeecCCC-chhhhccCce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 401 ---GSSAAGLTASVIRDGSS-REFYLEGGAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 401 ---~~~~~gl~~~~~~~~~~-~~~~~~~G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
......+.+........ .......... ......+++|||++.++.+.++.|+..+++. +.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-------------~~~~ 150 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHV 150 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-------------CSSE
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-------------CCce
Confidence 00000000000000000 0000000000 1223469999999999999999999999852 3456
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHH
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKR 555 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~ 555 (726)
.+|.++|.+ ..+.+++.+|+ ..+.+.+... +.+..
T Consensus 151 ~~Il~~~~~-------------~~l~~~l~sr~-~~i~~~~l~~-------------------------------~~~~~ 185 (373)
T 1jr3_A 151 KFLLATTDP-------------QKLPVTILSRC-LQFHLKALDV-------------------------------EQIRH 185 (373)
T ss_dssp EEEEEESCG-------------GGSCHHHHTTS-EEEECCCCCH-------------------------------HHHHH
T ss_pred EEEEEeCCh-------------HhCcHHHHhhe-eEeeCCCCCH-------------------------------HHHHH
Confidence 777777632 13677899998 4454544432 22222
Q ss_pred HHHH-hHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHH
Q 004862 556 YIQY-CRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEA 634 (726)
Q Consensus 556 yi~~-a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~a 634 (726)
++.. ++. ....+++++.+.|..+ .++++|.+.++++.+...+ ...|+.+||.++
T Consensus 186 ~l~~~~~~-~~~~~~~~a~~~l~~~--------------------~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~ 240 (373)
T 1jr3_A 186 QLEHILNE-EHIAHEPRALQLLARA--------------------AEGSLRDALSLTDQAIASG----DGQVSTQAVSAM 240 (373)
T ss_dssp HHHHHHHH-HTCCBCHHHHHHHHHH--------------------SSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHH
T ss_pred HHHHHHHH-cCCCCCHHHHHHHHHH--------------------CCCCHHHHHHHHHHHHHhc----CCcccHHHHHHH
Confidence 2221 111 1235788888888775 3689999999987665433 467999999876
Q ss_pred HH
Q 004862 635 VR 636 (726)
Q Consensus 635 i~ 636 (726)
+.
T Consensus 241 ~~ 242 (373)
T 1jr3_A 241 LG 242 (373)
T ss_dssp TT
T ss_pred hC
Confidence 53
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=7.6e-10 Score=116.90 Aligned_cols=203 Identities=15% Similarity=0.143 Sum_probs=122.8
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC-----cE-EeCCCCCCccc
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI-----AV-YTSGKGSSAAG 406 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~-----~~-~~~g~~~~~~g 406 (726)
+.+++|++.+++.+.-++..+. . .|+||+||||+|||++++.+++.+.. .+ +..+.. ..+
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~-----------~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~--~~~ 85 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN-----------M-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD--DRG 85 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC-----------C-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS--CCS
T ss_pred HHHHHCCHHHHHHHHHHHHcCC-----------C-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc--ccC
Confidence 3468899999998887776551 1 46999999999999999999876421 11 111111 000
Q ss_pred ccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCC
Q 004862 407 LTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSG 486 (726)
Q Consensus 407 l~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g 486 (726)
....++. -..+......+......+++|||++.++.+.++.|+..+++. +..+.+|.++|++
T Consensus 86 --~~~i~~~-~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~-- 147 (323)
T 1sxj_B 86 --IDVVRNQ-IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-------------SNSTRFAFACNQS-- 147 (323)
T ss_dssp --HHHHHTH-HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-------------TTTEEEEEEESCG--
T ss_pred --hHHHHHH-HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-------------CCCceEEEEeCCh--
Confidence 0000100 000000000010123569999999999999999999999863 2356778888742
Q ss_pred cCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHH-hHccCC
Q 004862 487 RYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQY-CRLECH 565 (726)
Q Consensus 487 ~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~-a~~~~~ 565 (726)
..+.+++.+|+. ++.+.++..+ .+..++.. ++. -.
T Consensus 148 -----------~~l~~~l~sr~~-~i~~~~~~~~-------------------------------~~~~~l~~~~~~-~~ 183 (323)
T 1sxj_B 148 -----------NKIIEPLQSQCA-ILRYSKLSDE-------------------------------DVLKRLLQIIKL-ED 183 (323)
T ss_dssp -----------GGSCHHHHTTSE-EEECCCCCHH-------------------------------HHHHHHHHHHHH-HT
T ss_pred -----------hhchhHHHhhce-EEeecCCCHH-------------------------------HHHHHHHHHHHH-cC
Confidence 136788999987 4545444322 22222211 111 12
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 566 PRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 566 p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
..+++++.+.|..+ ..+++|.+.++++.+... ...|+.+++.+++.
T Consensus 184 ~~~~~~~~~~l~~~--------------------~~G~~r~a~~~l~~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 184 VKYTNDGLEAIIFT--------------------AEGDMRQAINNLQSTVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp CCBCHHHHHHHHHH--------------------HTTCHHHHHHHHHHHHHH-----HSSBCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHhc-----CCCcCHHHHHHHHC
Confidence 24788888888775 247899988888654321 24689999988764
No 67
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.20 E-value=3.8e-10 Score=119.86 Aligned_cols=185 Identities=16% Similarity=0.243 Sum_probs=107.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC---Cc-EEeCCCCCCcccccceee---ecCCCchhhhccCceeecCCCeEEeccc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP---IA-VYTSGKGSSAAGLTASVI---RDGSSREFYLEGGAMVLADGGVVCIDEF 440 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~---~~-~~~~g~~~~~~gl~~~~~---~~~~~~~~~~~~G~l~la~~gvl~iDEi 440 (726)
.+++|+||||||||++|+++++.+. .. ++.+ ...+..... .......+. . ...+.+++||||+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~vL~iDEi 107 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-----ADDFAQAMVEHLKKGTINEFR--N---MYKSVDLLLLDDV 107 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-----HHHHHHHHHHHHHHTCHHHHH--H---HHHTCSEEEEECG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHHcCcHHHHH--H---HhcCCCEEEEcCc
Confidence 5899999999999999999988662 22 2211 000000000 000000000 0 1234789999999
Q ss_pred CcCCH--HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC--eeeEecc
Q 004862 441 DKMRP--EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD--LIFIVKD 516 (726)
Q Consensus 441 ~~~~~--~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd--li~~l~d 516 (726)
+.++. ..+..++..++... ..+ ...|++++|++. +-..+.++|++||+ +++.+++
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~~----~~~-------~~iii~~~~~~~----------~l~~l~~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTLY----LLE-------KQIILASDRHPQ----------KLDGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHHH----HTT-------CEEEEEESSCGG----------GCTTSCHHHHHHHHTSEEEECCC
T ss_pred ccccCChHHHHHHHHHHHHHH----HCC-------CeEEEEecCChH----------HHHHhhhHhhhcccCceEEEeCC
Confidence 99986 56777777765321 111 123455555431 11247899999997 7777766
Q ss_pred CCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 004862 517 IRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGE 596 (726)
Q Consensus 517 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~ 596 (726)
. .+.-..+..+.+. . ....+++++.+.|..+
T Consensus 167 -~-~~e~~~il~~~~~-----------------------------~-~~~~l~~~~l~~l~~~----------------- 197 (324)
T 1l8q_A 167 -D-NKTRFKIIKEKLK-----------------------------E-FNLELRKEVIDYLLEN----------------- 197 (324)
T ss_dssp -C-HHHHHHHHHHHHH-----------------------------H-TTCCCCHHHHHHHHHH-----------------
T ss_pred -C-HHHHHHHHHHHHH-----------------------------h-cCCCCCHHHHHHHHHh-----------------
Confidence 3 2222222211111 0 1235889999988876
Q ss_pred CCCccCChhHHHHHHHHHHHHHh----hhCCCcc-cHHHHHHHHH
Q 004862 597 AAPIPITVRQLEAIVRLSEALAK----MKLSHVA-TENEVNEAVR 636 (726)
Q Consensus 597 ~~~~~~t~R~L~~lirla~a~A~----l~~~~~V-~~~Dv~~ai~ 636 (726)
. +++|+|++++..+.+..+ +.....| +.+++.+++.
T Consensus 198 ---~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~ 238 (324)
T 1l8q_A 198 ---T-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVA 238 (324)
T ss_dssp ---C-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHH
Confidence 3 789999999987766510 1223457 8888888775
No 68
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.18 E-value=6.2e-11 Score=131.24 Aligned_cols=185 Identities=12% Similarity=0.210 Sum_probs=114.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc------EEeCCCCCCcccccceeeecCCCchhhhccC---ce--eec-CCCeE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA------VYTSGKGSSAAGLTASVIRDGSSREFYLEGG---AM--VLA-DGGVV 435 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~------~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G---~l--~la-~~gvl 435 (726)
.+++|+||||||||+||++++..+... ++.+. ..+...... .+..+ .+ ... ...++
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-----EKFLNDLVD-------SMKEGKLNEFREKYRKKVDIL 198 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-----HHHHHHHHH-------HHHTTCHHHHHHHHTTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-----HHHHHHHHH-------HHHcccHHHHHHHhcCCCCEE
Confidence 689999999999999999998765221 22110 000000000 00000 01 122 56799
Q ss_pred EecccCcCCH--HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecC-CCCCcCCCccchhhhccCchhhhcccC--e
Q 004862 436 CIDEFDKMRP--EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAAN-PPSGRYDDLKSAQDNIDLQTTILSRFD--L 510 (726)
Q Consensus 436 ~iDEi~~~~~--~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~N-p~~g~~~~~~~~~~~~~l~~~Ll~RFd--l 510 (726)
+|||++.+.. ..|..|+..++.-. . ....+|.+++ ++. +-..+.++|++||+ +
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l~----~--------~~~~iIitt~~~~~----------~l~~l~~~L~sR~~~g~ 256 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNELH----D--------SGKQIVICSDREPQ----------KLSEFQDRLVSRFQMGL 256 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHHH----T--------TTCEEEEEESSCGG----------GCSSCCHHHHHHHHSSB
T ss_pred EEeCcccccCChHHHHHHHHHHHHHH----H--------CCCeEEEEECCCHH----------HHHHHHHHHHhhccCCe
Confidence 9999999986 67788888876421 1 1223444444 321 11237889999997 6
Q ss_pred eeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 004862 511 IFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQ 590 (726)
Q Consensus 511 i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~ 590 (726)
++.+.++..++. . .++ ++.... ....+++++.+.|...
T Consensus 257 ~i~l~~p~~e~r-~----~iL----------------------~~~~~~----~~~~i~~e~l~~la~~----------- 294 (440)
T 2z4s_A 257 VAKLEPPDEETR-K----SIA----------------------RKMLEI----EHGELPEEVLNFVAEN----------- 294 (440)
T ss_dssp CCBCCCCCHHHH-H----HHH----------------------HHHHHH----HTCCCCTTHHHHHHHH-----------
T ss_pred EEEeCCCCHHHH-H----HHH----------------------HHHHHH----cCCCCCHHHHHHHHHh-----------
Confidence 776655543221 1 111 111110 1224788888888765
Q ss_pred hcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 004862 591 ANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLF 638 (726)
Q Consensus 591 ~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~ 638 (726)
+++++|+|+++++.+.+.|....+ .|+.+++.+++.-.
T Consensus 295 ---------~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 295 ---------VDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred ---------cCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 578999999999999999987754 69999999988643
No 69
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.18 E-value=3e-11 Score=123.73 Aligned_cols=181 Identities=24% Similarity=0.249 Sum_probs=102.0
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccC-ceeec---CCCeEEecccCcCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGG-AMVLA---DGGVVCIDEFDKMR 444 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G-~l~la---~~gvl~iDEi~~~~ 444 (726)
+++|+||||||||+|+++++.......+. +.+........+.....-+ .+..+ ...++++||++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~ 121 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFIT---------ASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEE---------EEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE---------eeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhh
Confidence 49999999999999999999987644331 1100000000010000000 01111 23589999998753
Q ss_pred HH--------------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--cc
Q 004862 445 PE--------------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RF 508 (726)
Q Consensus 445 ~~--------------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RF 508 (726)
.. ....++..|+.+. ....+.++|++|.+. .+.+++++ ||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p~-------------~ld~~l~r~~rf 177 (254)
T 1ixz_A 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGRF 177 (254)
T ss_dssp C---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCGG-------------GSCGGGGSTTSS
T ss_pred cccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCch-------------hCCHHHcCCCcC
Confidence 21 1234444444322 022367889998541 26788887 89
Q ss_pred CeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHH-HHHHHHHHHHHHHHH
Q 004862 509 DLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESA-SAKLRDQYVQIRKDM 587 (726)
Q Consensus 509 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea-~~~l~~~y~~~R~~~ 587 (726)
|..+.++.+..++ +..++..+... . .+++++ ...+..
T Consensus 178 ~~~i~i~~p~~~~-----r~~il~~~~~~--------------------------~--~~~~~~~~~~la~--------- 215 (254)
T 1ixz_A 178 DRQIAIDAPDVKG-----REQILRIHARG--------------------------K--PLAEDVDLALLAK--------- 215 (254)
T ss_dssp CEEEECCSCCHHH-----HHHHHHHHHTT--------------------------S--CBCTTCCHHHHHH---------
T ss_pred CeEEeeCCcCHHH-----HHHHHHHHHcC--------------------------C--CCCcccCHHHHHH---------
Confidence 9888776554322 22233322111 1 122222 222322
Q ss_pred hhhhcccCCCCCccC-ChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 588 RRQANETGEAAPIPI-TVRQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 588 ~~~~~~~~~~~~~~~-t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
.|++ +.|+|+++++.|...|..+....|+.+|+.+|+
T Consensus 216 -----------~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 216 -----------RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp -----------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred -----------HcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 2444 559999999999888877777889999999875
No 70
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.16 E-value=2e-10 Score=148.92 Aligned_cols=203 Identities=14% Similarity=0.167 Sum_probs=118.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc-EEe-CCC-CCCcccccceeeecCCCchhhhccCceee----cCCCeEEeccc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA-VYT-SGK-GSSAAGLTASVIRDGSSREFYLEGGAMVL----ADGGVVCIDEF 440 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~-~~~-~g~-~~~~~gl~~~~~~~~~~~~~~~~~G~l~l----a~~gvl~iDEi 440 (726)
.|+||+||||||||++|+.+....+.. ... ... .++...+... ...... ......|.+.. ....|+||||+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~-i~~~~~-~~~~~~g~~~~P~~~gk~~VlFiDEi 1345 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSA-LHRHTN-YVTTSKGLTLLPKSDIKNLVLFCDEI 1345 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHH-HHHHBC-CEEETTTEEEEEBSSSSCEEEEEETT
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHH-HHHHhh-hccccCCccccCCCCCceEEEEeccc
Confidence 799999999999999996555444332 111 110 0011000000 000000 00001122211 12349999999
Q ss_pred CcCCHH------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCC--CCcCCCccchhhhccCchhhhcccCeee
Q 004862 441 DKMRPE------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPP--SGRYDDLKSAQDNIDLQTTILSRFDLIF 512 (726)
Q Consensus 441 ~~~~~~------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~--~g~~~~~~~~~~~~~l~~~Ll~RFdli~ 512 (726)
+....+ ..+.|.++||.+.+...+.+....+ .++.+||||||+ +|++. ++++|++||.+ +
T Consensus 1346 nmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~~----------l~~rllRrf~v-i 1413 (2695)
T 4akg_A 1346 NLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRIP----------MSERFTRHAAI-L 1413 (2695)
T ss_dssp TCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCCC----------CCHHHHTTEEE-E
T ss_pred ccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCcc----------CChhhhheeeE-E
Confidence 876444 6789999999998877676666666 689999999997 56654 89999999954 3
Q ss_pred EeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 004862 513 IVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQAN 592 (726)
Q Consensus 513 ~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~ 592 (726)
.+ +.|+.+.-..|...++..+....+. + +.+.+.......+.|..++..-..
T Consensus 1414 ~i-~~P~~~~l~~I~~~il~~~l~~~~~-----------------------v-~~~~~~lv~ati~~y~~v~~~~~~--- 1465 (2695)
T 4akg_A 1414 YL-GYPSGKSLSQIYEIYYKAIFKLVPE-----------------------F-RSYTEPFARASVHLYNECKARYST--- 1465 (2695)
T ss_dssp EC-CCCTTTHHHHHHHHHHHHHTTSSGG-----------------------G-GGGHHHHHHHHHHHHHHHHHHSCT---
T ss_pred Ee-CCCCHHHHHHHHHHHHHHHhccCHH-----------------------H-HHHHHHHHHHHHHHHHHHHHHcCC---
Confidence 34 4444444556666555544321100 0 123445556666667666654321
Q ss_pred ccCCCCCccCChhHHHHHHHHH
Q 004862 593 ETGEAAPIPITVRQLEAIVRLS 614 (726)
Q Consensus 593 ~~~~~~~~~~t~R~L~~lirla 614 (726)
..+.++.+|+|.|.++++-.
T Consensus 1466 --~~k~HY~FnlRDLsrv~qGl 1485 (2695)
T 4akg_A 1466 --GLQSHYLFSPRELTRLVRGV 1485 (2695)
T ss_dssp --TTCTTCCCCHHHHHHHHHHH
T ss_pred --ccCCCcccCHHHHHHHHHHH
Confidence 12457888999999888743
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.14 E-value=4.4e-11 Score=124.25 Aligned_cols=184 Identities=23% Similarity=0.251 Sum_probs=101.7
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccC-ceee---cCCCeEEecccCcCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGG-AMVL---ADGGVVCIDEFDKMR 444 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G-~l~l---a~~gvl~iDEi~~~~ 444 (726)
+++|+||||||||+|+++++......... +.+....+...+.....-+ .+.. ....++++||++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~ 145 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFIT---------ASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 145 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEE---------EEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEE---------ecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhh
Confidence 49999999999999999999987644331 1110000000010000000 0001 123689999998652
Q ss_pred H-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCee
Q 004862 445 P-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLI 511 (726)
Q Consensus 445 ~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli 511 (726)
. ..+..+.+.+.+ + ..|. ....+.++|++|.+. .+.+++++ |||..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~ll~~----l-sgg~---~~~~~i~~a~t~~p~-------------~ld~~l~r~~rf~~~ 204 (278)
T 1iy2_A 146 RKRGSGVGGGNDEREQTLNQLLVE----M-DGFE---KDTAIVVMAATNRPD-------------ILDPALLRPGRFDRQ 204 (278)
T ss_dssp CC--------CHHHHHHHHHHHHH----H-TTCC---TTCCEEEEEEESCTT-------------SSCHHHHSTTSSCCE
T ss_pred cccccccCCcchHHHHHHHHHHHH----H-hCCC---CCCCEEEEEecCCch-------------hCCHhHcCCCcCCeE
Confidence 1 222333333321 0 0111 122467889998641 16788887 89988
Q ss_pred eEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHH-HHHHHHHHHHHHHHHhhh
Q 004862 512 FIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESA-SAKLRDQYVQIRKDMRRQ 590 (726)
Q Consensus 512 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea-~~~l~~~y~~~R~~~~~~ 590 (726)
+.++.+..++ +..++..+.. . . .+++++ ...+..
T Consensus 205 i~i~~p~~~~-----r~~il~~~~~-------------------------~-~--~~~~~~~~~~la~------------ 239 (278)
T 1iy2_A 205 IAIDAPDVKG-----REQILRIHAR-------------------------G-K--PLAEDVDLALLAK------------ 239 (278)
T ss_dssp EECCCCCHHH-----HHHHHHHHHT-------------------------T-S--CBCTTCCHHHHHH------------
T ss_pred EEeCCcCHHH-----HHHHHHHHHc-------------------------c-C--CCCcccCHHHHHH------------
Confidence 8776554322 2222322211 0 0 122222 222222
Q ss_pred hcccCCCCCccCCh-hHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 004862 591 ANETGEAAPIPITV-RQLEAIVRLSEALAKMKLSHVATENEVNEAV 635 (726)
Q Consensus 591 ~~~~~~~~~~~~t~-R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai 635 (726)
.|++.. |+|+++++.|...|..+....|+.+|+.+|+
T Consensus 240 --------~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 240 --------RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp --------TCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred --------HcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 356654 9999999999888887777889999999875
No 72
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.12 E-value=3.1e-11 Score=124.95 Aligned_cols=172 Identities=13% Similarity=0.200 Sum_probs=96.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC----
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM---- 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~---- 443 (726)
.++||+||||||||++|+++++.....+..........|........ .-...+. .......+++||||++.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~--~~~~~~~--~~~~~~~~vl~iDEid~l~~~~ 140 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQ--AMKKIFD--DAYKSQLSCVVVDDIERLLDYV 140 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHH--HHHHHHH--HHHTSSEEEEEECCHHHHTTCB
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHH--HHHHHHH--HHHhcCCcEEEEEChhhhhccC
Confidence 68999999999999999999987654432110000000000000000 0000000 001134689999999987
Q ss_pred --C----HHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCch-hhhcccCeeeEecc
Q 004862 444 --R----PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQT-TILSRFDLIFIVKD 516 (726)
Q Consensus 444 --~----~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~-~Ll~RFdli~~l~d 516 (726)
+ ...+..|.+.++... ..+.++.||+|+|++. .+.+ .+.+||+..+.+++
T Consensus 141 ~~~~~~~~~~l~~L~~~~~~~~----------~~~~~~~ii~ttn~~~-------------~l~~~~l~~rf~~~i~~p~ 197 (272)
T 1d2n_A 141 PIGPRFSNLVLQALLVLLKKAP----------PQGRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHVPN 197 (272)
T ss_dssp TTTTBCCHHHHHHHHHHTTCCC----------STTCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEECCC
T ss_pred CCChhHHHHHHHHHHHHhcCcc----------CCCCCEEEEEecCChh-------------hcchhhhhcccceEEcCCC
Confidence 3 333444444443211 1134578999999631 1333 57889999988876
Q ss_pred CCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 004862 517 IRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGE 596 (726)
Q Consensus 517 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~ 596 (726)
..+++. +.+++... ..+++++.+.+.+...
T Consensus 198 l~~r~~------------------------------i~~i~~~~-----~~~~~~~~~~l~~~~~--------------- 227 (272)
T 1d2n_A 198 IATGEQ------------------------------LLEALELL-----GNFKDKERTTIAQQVK--------------- 227 (272)
T ss_dssp EEEHHH------------------------------HHHHHHHH-----TCSCHHHHHHHHHHHT---------------
T ss_pred ccHHHH------------------------------HHHHHHhc-----CCCCHHHHHHHHHHhc---------------
Confidence 654321 11221111 1367777776666421
Q ss_pred CCCccCChhHHHHHHHHHHH
Q 004862 597 AAPIPITVRQLEAIVRLSEA 616 (726)
Q Consensus 597 ~~~~~~t~R~L~~lirla~a 616 (726)
..+|++++|++.++++.|..
T Consensus 228 g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 228 GKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp TSEEEECHHHHHHHHHHHTT
T ss_pred CCCccccHHHHHHHHHHHhh
Confidence 13689999999999987754
No 73
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.11 E-value=1.5e-09 Score=141.40 Aligned_cols=201 Identities=16% Similarity=0.149 Sum_probs=121.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEe--CC-CCCCcccccceeeecCCCchhhhcc--CceeecC--C--CeEEec
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT--SG-KGSSAAGLTASVIRDGSSREFYLEG--GAMVLAD--G--GVVCID 438 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~--~g-~~~~~~gl~~~~~~~~~~~~~~~~~--G~l~la~--~--gvl~iD 438 (726)
.||||+||||||||+++.......+..... .- ..++...+...... ..++.... |.+..+. | .|+|||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~---~~e~~~~~~~G~~~~p~~~Gk~~VlFiD 1381 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDH---HCEYKRTPSGETVLRPTQLGKWLVVFCD 1381 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHH---HEEEEECTTSCEEEEESSTTCEEEEEET
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhh---cceEEeccCCCcccCCCcCCceEEEEec
Confidence 799999999999998886655444432111 11 11111111000000 00111111 5554443 2 399999
Q ss_pred ccCcCCHH------HHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCC--CcCCCccchhhhccCchhhhcccCe
Q 004862 439 EFDKMRPE------DRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPS--GRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 439 Ei~~~~~~------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~--g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
|++...++ ..+.|+++||.+.+...+.+....+ .++.+|||+||+. |+. .++++|++||.+
T Consensus 1382 DiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr~----------~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1382 EINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGRV----------QLTHRFLRHAPI 1450 (3245)
T ss_dssp TTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTCC----------CCCHHHHTTCCE
T ss_pred ccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCCc----------cCCHHHHhhceE
Confidence 99987755 6799999999999876555555555 7899999999984 443 399999999987
Q ss_pred eeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 004862 511 IFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQ 590 (726)
Q Consensus 511 i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~ 590 (726)
+. .+.++.+.-..|...++..+....+. + ..+.+...+.....|..++....-
T Consensus 1451 i~--i~~ps~esL~~If~til~~~l~~~p~-----------------------l-~~~~~~lv~ati~ly~~v~~~~lp- 1503 (3245)
T 3vkg_A 1451 LL--VDFPSTSSLTQIYGTFNRALMKLLPN-----------------------L-RSFADNLTDAMVEFYSESQKRFTP- 1503 (3245)
T ss_dssp EE--CCCCCHHHHHHHHHHHHHHHTTSCGG-----------------------G-TTSHHHHHHHHHHHHHHHHHHSCT-
T ss_pred EE--eCCCCHHHHHHHHHHHHHHHHhhChH-----------------------H-HHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 54 34555554555655554433211100 0 124456667777777777654321
Q ss_pred hcccCCCCCccCChhHHHHHHHH
Q 004862 591 ANETGEAAPIPITVRQLEAIVRL 613 (726)
Q Consensus 591 ~~~~~~~~~~~~t~R~L~~lirl 613 (726)
..+.++.+|+|.|-++++-
T Consensus 1504 ----~~k~HY~FnLRDLsrv~qG 1522 (3245)
T 3vkg_A 1504 ----DIQAHYIYSPRELSRWDRA 1522 (3245)
T ss_dssp ----TTSTTCCCCHHHHHHHHHH
T ss_pred ----CcCCCccccHHHHHHHHHH
Confidence 1235688899999998874
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.10 E-value=1.1e-10 Score=122.32 Aligned_cols=127 Identities=14% Similarity=0.124 Sum_probs=70.1
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhh-hccCcee-------ecCCCeEEe
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFY-LEGGAMV-------LADGGVVCI 437 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~-~~~G~l~-------la~~gvl~i 437 (726)
....+||+||||||||++|+++++.+...++. +.++-..+...|... .....+. ....+|+||
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~---------v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIM---------MSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE---------EEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE---------EeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34679999999999999999999887655432 111111110001000 0001111 225689999
Q ss_pred cccCcCCH-------------HHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhh
Q 004862 438 DEFDKMRP-------------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTI 504 (726)
Q Consensus 438 DEi~~~~~-------------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~L 504 (726)
||||++.+ ..+..|+++|+.....-........-..++.||+|||.+. .++++|
T Consensus 106 DEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-------------~ld~al 172 (293)
T 3t15_A 106 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-------------TLYAPL 172 (293)
T ss_dssp ECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-------------C--CHH
T ss_pred echhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-------------cCCHHH
Confidence 99998765 2458899999854422111111122345789999999542 277888
Q ss_pred hc--ccCeeeEe
Q 004862 505 LS--RFDLIFIV 514 (726)
Q Consensus 505 l~--RFdli~~l 514 (726)
++ |||.++.+
T Consensus 173 ~R~~R~d~~i~~ 184 (293)
T 3t15_A 173 IRDGRMEKFYWA 184 (293)
T ss_dssp HHHHHEEEEEEC
T ss_pred hCCCCCceeEeC
Confidence 84 99987764
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=5.5e-09 Score=112.09 Aligned_cols=195 Identities=11% Similarity=0.072 Sum_probs=110.0
Q ss_pred CCccCchhHHHHHHHHH-hCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHH-hCCCc---EEeCCCCCC-----
Q 004862 334 PSIFGHDDVKKAVSCLL-FGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEK-TAPIA---VYTSGKGSS----- 403 (726)
Q Consensus 334 p~I~G~~~~k~aill~L-~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~-~~~~~---~~~~g~~~~----- 403 (726)
.+++|++.+++.+.-++ ..+ +. .|+||+||||+|||++++.+++ +.+.. +...|....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----------~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----------DL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----------CC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----------CC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 35789999988876665 332 11 4599999999999999999988 44322 111110000
Q ss_pred -----------cccccceeeecCC---Cchhh---hccCce--------eecCCCeEEecccCcCCHHHHHHHHHHHhcc
Q 004862 404 -----------AAGLTASVIRDGS---SREFY---LEGGAM--------VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQ 458 (726)
Q Consensus 404 -----------~~gl~~~~~~~~~---~~~~~---~~~G~l--------~la~~gvl~iDEi~~~~~~~~~~L~~~me~~ 458 (726)
...+.+....... ..+.. .....+ ...+..+++|||++.|++..++.|+..|++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0000000000000 00000 000000 0224459999999999999999999999863
Q ss_pred eEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcc
Q 004862 459 TISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASAD 538 (726)
Q Consensus 459 ~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~ 538 (726)
+.++.+|.+||.+. .+.+++.+|+ ..+.+.+++.++
T Consensus 162 -------------~~~~~~Il~t~~~~-------------~l~~~l~sR~-~~~~~~~~~~~~----------------- 197 (354)
T 1sxj_E 162 -------------SKNIRLIMVCDSMS-------------PIIAPIKSQC-LLIRCPAPSDSE----------------- 197 (354)
T ss_dssp -------------TTTEEEEEEESCSC-------------SSCHHHHTTS-EEEECCCCCHHH-----------------
T ss_pred -------------cCCCEEEEEeCCHH-------------HHHHHHHhhc-eEEecCCcCHHH-----------------
Confidence 13466777777421 2678899999 566665444221
Q ss_pred cccccccccCCHHHHHHHHHHhHccCCCCCC-HHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHH
Q 004862 539 AVSADSKVSKEENWLKRYIQYCRLECHPRLS-ESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEAL 617 (726)
Q Consensus 539 ~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls-~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~ 617 (726)
+.+++...-..-...++ +++.+.|... .++++|.+.+++..+...
T Consensus 198 --------------~~~~l~~~~~~~~~~~~~~~~l~~i~~~--------------------~~G~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 198 --------------ISTILSDVVTNERIQLETKDILKRIAQA--------------------SNGNLRVSLLMLESMALN 243 (354)
T ss_dssp --------------HHHHHHHHHHHHTCEECCSHHHHHHHHH--------------------HTTCHHHHHHHHTHHHHT
T ss_pred --------------HHHHHHHHHHHcCCCCCcHHHHHHHHHH--------------------cCCCHHHHHHHHHHHHHh
Confidence 22222111000122467 7888888765 347899999999766544
Q ss_pred H
Q 004862 618 A 618 (726)
Q Consensus 618 A 618 (726)
+
T Consensus 244 ~ 244 (354)
T 1sxj_E 244 N 244 (354)
T ss_dssp T
T ss_pred C
Confidence 3
No 76
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.03 E-value=8.2e-11 Score=137.42 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=87.1
Q ss_pred CccCchhHHHHHHHHHhCCCcc-cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee
Q 004862 335 SIFGHDDVKKAVSCLLFGGSRK-NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 413 (726)
Q Consensus 335 ~I~G~~~~k~aill~L~~~~~~-~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~ 413 (726)
+|.|.+.+|+.+.-++.-.... ..-.....+....+||+||||||||++|++++..+...++.. +...+....+.
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v----~~~~l~s~~vG 553 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI----KGPELLTMWFG 553 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC----CHHHHHTTTCS
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEe----ccchhhccccc
Confidence 3678999999886554322110 000111123345799999999999999999999988776632 11112111111
Q ss_pred cCCCchhhhccCceee---cCCCeEEecccCcCCHH--------------HHHHHHHHHhcceEeeeccceEEEeeCceE
Q 004862 414 DGSSREFYLEGGAMVL---ADGGVVCIDEFDKMRPE--------------DRVAIHEAMEQQTISIAKAGITTVLNSRTS 476 (726)
Q Consensus 414 ~~~~~~~~~~~G~l~l---a~~gvl~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~~~g~~~~l~~~~~ 476 (726)
+ .+..+. ..+.. ....|+||||||.+-+. ..+.|+..|+.-. . ..++.
T Consensus 554 e---se~~vr-~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~----~-------~~~V~ 618 (806)
T 3cf2_A 554 E---SEANVR-EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS----T-------KKNVF 618 (806)
T ss_dssp S---CHHHHH-HHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC----S-------SSSEE
T ss_pred h---HHHHHH-HHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC----C-------CCCEE
Confidence 1 010000 01111 23569999999998432 2355666666321 1 23578
Q ss_pred EEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccC
Q 004862 477 VLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDI 517 (726)
Q Consensus 477 iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~ 517 (726)
||||||.+. .++++|++ |||..+.++.+
T Consensus 619 vi~aTN~p~-------------~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 619 IIGATNRPD-------------IIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp EECC-CCSS-------------SSCHHHHSTTTSCCEEEC---
T ss_pred EEEeCCCch-------------hCCHhHcCCCcceEEEEECCc
Confidence 999999752 28899998 99987776543
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.03 E-value=1.8e-09 Score=127.98 Aligned_cols=143 Identities=13% Similarity=0.175 Sum_probs=80.9
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCC----------cEEeCCCCC
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPI----------AVYTSGKGS 402 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~----------~~~~~g~~~ 402 (726)
...++|++...+.++-.|... ...|+||+||||||||+++++++..... .++...
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~--- 249 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD--- 249 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC---
T ss_pred CCCccCCHHHHHHHHHHHhcc------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc---
Confidence 345889988877776666543 2268999999999999999999876521 122110
Q ss_pred CcccccceeeecCCCchhhhcc----CceeecCCCeEEecccCcCC---------HHHHHHHHHHHhcceEeeeccceEE
Q 004862 403 SAAGLTASVIRDGSSREFYLEG----GAMVLADGGVVCIDEFDKMR---------PEDRVAIHEAMEQQTISIAKAGITT 469 (726)
Q Consensus 403 ~~~gl~~~~~~~~~~~~~~~~~----G~l~la~~gvl~iDEi~~~~---------~~~~~~L~~~me~~~i~i~~~g~~~ 469 (726)
...+.+.. ...+.+...- ..+..+.++++||||++.+. .+....|..+++.
T Consensus 250 -~~~l~~~~---~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~------------ 313 (758)
T 1r6b_X 250 -IGSLLAGT---KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS------------ 313 (758)
T ss_dssp -CC---CCC---CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS------------
T ss_pred -HHHHhccc---cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC------------
Confidence 00011000 0112221000 01112346899999999982 2223344444432
Q ss_pred EeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 470 VLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 470 ~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
.++.+|+++|++. ........++|.+||+. +.+..++
T Consensus 314 ---~~~~~I~at~~~~--------~~~~~~~d~aL~~Rf~~-i~v~~p~ 350 (758)
T 1r6b_X 314 ---GKIRVIGSTTYQE--------FSNIFEKDRALARRFQK-IDITEPS 350 (758)
T ss_dssp ---CCCEEEEEECHHH--------HHCCCCCTTSSGGGEEE-EECCCCC
T ss_pred ---CCeEEEEEeCchH--------HhhhhhcCHHHHhCceE-EEcCCCC
Confidence 2467899998631 11233467889999994 4444443
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.02 E-value=2e-09 Score=127.56 Aligned_cols=220 Identities=13% Similarity=0.126 Sum_probs=117.9
Q ss_pred cCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCccccccee
Q 004862 333 APSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGLTASV 411 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl~~~~ 411 (726)
...|+|++...+.++-.|... ...|+||+||||||||++|+++++.+...... ...+.....+.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~ 246 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT 246 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCCccCchHHHHHHHHHHhCC------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc
Confidence 346899999999888777654 12689999999999999999999875221000 00000111111100
Q ss_pred eecCCCchhhhc----cCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCc
Q 004862 412 IRDGSSREFYLE----GGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGR 487 (726)
Q Consensus 412 ~~~~~~~~~~~~----~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~ 487 (726)
...|++... -+.+..+.++|+||| ...+.++.|+.+|+.+ .+.+|+|||+..
T Consensus 247 ---~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~-- 302 (758)
T 3pxi_A 247 ---KYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDE-- 302 (758)
T ss_dssp ---------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTT--
T ss_pred ---cccchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC---------------CEEEEeCCChHH--
Confidence 001111100 011112457899999 4455677777777744 367999999742
Q ss_pred CCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCC-
Q 004862 488 YDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHP- 566 (726)
Q Consensus 488 ~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p- 566 (726)
......+.++|.+||.. +.+..++ .+.-..|.+++...+... ....++.+.+.....++..++..
T Consensus 303 ------~~~~~~~d~al~rRf~~-i~v~~p~-~~~~~~il~~~~~~~~~~------~~~~i~~~al~~~~~~s~~~i~~~ 368 (758)
T 3pxi_A 303 ------YRKYIEKDAALERRFQP-IQVDQPS-VDESIQILQGLRDRYEAH------HRVSITDDAIEAAVKLSDRYISDR 368 (758)
T ss_dssp ------THHHHTTCSHHHHSEEE-EECCCCC-HHHHHHHHHHTTTTSGGG------SSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred ------HHHHhhccHHHHhhCcE-EEeCCCC-HHHHHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHHhhcccccC
Confidence 12234578999999964 5555443 332333333332221111 12457788888888877775543
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHH
Q 004862 567 RLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVR 612 (726)
Q Consensus 567 ~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lir 612 (726)
.+++.+.+.+.......+... ..+|..++.++.-+.
T Consensus 369 ~~p~~ai~ll~~a~~~~~~~~----------~~~p~~~~~l~~~~~ 404 (758)
T 3pxi_A 369 FLPDKAIDLIDEAGSKVRLRS----------FTTPPNLKELEQKLD 404 (758)
T ss_dssp CTTHHHHHHHHHHHHHHHHHT----------TC--CCTHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhhc----------cCCCcchhhHHHHHH
Confidence 456677777766544433321 235666666665544
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.97 E-value=6.6e-10 Score=129.81 Aligned_cols=164 Identities=19% Similarity=0.236 Sum_probs=93.6
Q ss_pred CCccCchhHHHHH----HHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccc
Q 004862 334 PSIFGHDDVKKAV----SCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTA 409 (726)
Q Consensus 334 p~I~G~~~~k~ai----ll~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~ 409 (726)
.+|.|.+.+|+.| .+-|.... .-.+...+...+|||+||||||||+||++++..+...++.. +...+..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~---~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v----~~~~l~s 276 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPA---LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI----NGPEIMS 276 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCG---GGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE----EHHHHHS
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHH---HHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE----EhHHhhc
Confidence 4678887766554 33333221 11111223345799999999999999999999887765531 0001110
Q ss_pred eeeecCCCchhhhccCceee---cCCCeEEecccCcCCHH-----------HHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 410 SVIRDGSSREFYLEGGAMVL---ADGGVVCIDEFDKMRPE-----------DRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~G~l~l---a~~gvl~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
.... ..+-.+. ..+.. ....|+||||||.+.+. ..+.|+..|+.-. . ..++
T Consensus 277 k~~g---ese~~lr-~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~----~-------~~~V 341 (806)
T 3cf2_A 277 KLAG---ESESNLR-KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK----Q-------RAHV 341 (806)
T ss_dssp SCTT---HHHHHHH-HHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC----G-------GGCE
T ss_pred ccch---HHHHHHH-HHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc----c-------cCCE
Confidence 0000 0000000 01111 23469999999998542 2345666665321 1 2358
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCChhhhHHHHHHHHHHhhhc
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRMYNQDKLIASHIIKIHASA 537 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~ 537 (726)
.||||||.+. .++++|++ |||..+.++.+. ..-+..|+..|...
T Consensus 342 ~VIaaTN~~d-------------~LD~ALrR~GRFd~~I~i~~Pd-----~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 342 IVMAATNRPN-------------SIDPALRRFGRFDREVDIGIPD-----ATGRLEILQIHTKN 387 (806)
T ss_dssp EEEEECSSTT-------------TSCTTTTSTTSSCEEEECCCCC-----HHHHHHHHHHTCSS
T ss_pred EEEEecCChh-------------hcCHHHhCCcccceEEecCCCC-----HHHHHHHHHHHhcC
Confidence 8999999652 27888888 999888776543 33355666666543
No 80
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=7.8e-09 Score=116.85 Aligned_cols=220 Identities=13% Similarity=0.126 Sum_probs=117.1
Q ss_pred CCccCchhHHHHHHHHHhCCCccc----CCCCcc-ccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCcccc
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKN----LPDGVK-LRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSAAGL 407 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~----~~~g~~-~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~~gl 407 (726)
.+|.|++.+++.+.-++....... ...|.. .....++||+||||||||++|+++++.+...+.. .........+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 358899998888877665421000 000100 0122589999999999999999999988654432 2111110000
Q ss_pred cceeeec-----CCCchhhhc-cCceeecCCCeEEecccCcCCHHHH---HHHHHHHhcceEeeeccceEEEeeCceEEE
Q 004862 408 TASVIRD-----GSSREFYLE-GGAMVLADGGVVCIDEFDKMRPEDR---VAIHEAMEQQTISIAKAGITTVLNSRTSVL 478 (726)
Q Consensus 408 ~~~~~~~-----~~~~~~~~~-~G~l~la~~gvl~iDEi~~~~~~~~---~~L~~~me~~~i~i~~~g~~~~l~~~~~ii 478 (726)
....... ...+.+... .+......+++++|||++.+....+ ..|+..++.. +..+|
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~---------------~~~iI 183 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT---------------STPLI 183 (516)
T ss_dssp HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC---------------SSCEE
T ss_pred HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc---------------CCCEE
Confidence 0000000 000000000 0000123457999999999987665 6777777652 23456
Q ss_pred EecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHH
Q 004862 479 AAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQ 558 (726)
Q Consensus 479 aa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~ 558 (726)
+++|.... ..+ +++ .|+...+.+..+..++ +++++.
T Consensus 184 li~~~~~~-----------~~l-~~l-~~r~~~i~f~~~~~~~-------------------------------~~~~L~ 219 (516)
T 1sxj_A 184 LICNERNL-----------PKM-RPF-DRVCLDIQFRRPDANS-------------------------------IKSRLM 219 (516)
T ss_dssp EEESCTTS-----------STT-GGG-TTTSEEEECCCCCHHH-------------------------------HHHHHH
T ss_pred EEEcCCCC-----------ccc-hhh-HhceEEEEeCCCCHHH-------------------------------HHHHHH
Confidence 66663210 112 234 3444566555444221 111111
Q ss_pred H-hHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 559 Y-CRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 559 ~-a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
. +.. -...+++++.+.|..+ .++++|++.++++.+.. .+..|+.+++.+++..
T Consensus 220 ~i~~~-~~~~i~~~~l~~la~~--------------------s~GdiR~~i~~L~~~~~-----~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 220 TIAIR-EKFKLDPNVIDRLIQT--------------------TRGDIRQVINLLSTIST-----TTKTINHENINEISKA 273 (516)
T ss_dssp HHHHH-HTCCCCTTHHHHHHHH--------------------TTTCHHHHHHHHTHHHH-----HSSCCCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCHHHHHHHHHH--------------------cCCcHHHHHHHHHHHHh-----cCCCCchHHHHHHHHh
Confidence 1 111 1224788888888765 35789999888865421 3567899999887754
Q ss_pred H
Q 004862 638 F 638 (726)
Q Consensus 638 ~ 638 (726)
.
T Consensus 274 ~ 274 (516)
T 1sxj_A 274 W 274 (516)
T ss_dssp H
T ss_pred h
Confidence 3
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.94 E-value=1.1e-08 Score=112.07 Aligned_cols=304 Identities=14% Similarity=0.088 Sum_probs=155.1
Q ss_pred cCCccCchhHHHHHHHHH-h---CCCcccCCCCccccCcceEEE--ECCCchhHHHHHHHHHHhCCC----------cEE
Q 004862 333 APSIFGHDDVKKAVSCLL-F---GGSRKNLPDGVKLRGDVNVLL--LGDPSTAKSQFLKFVEKTAPI----------AVY 396 (726)
Q Consensus 333 ~p~I~G~~~~k~aill~L-~---~~~~~~~~~g~~~r~~~~vLL--~G~pGtGKt~la~~i~~~~~~----------~~~ 396 (726)
-+.++|.+...+.+.-.+ . .+.. ....+++| +|+||+|||++++.+++.... .++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~---------~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAG---------LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSC---------BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCC---------CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 356889887666655444 2 1200 01157899 999999999999999765432 123
Q ss_pred eCC-CCCCcccccceeee-----cCCCc----h-hhhccCceee-cCCCeEEecccCcCCH------HHHHHHHHHHhcc
Q 004862 397 TSG-KGSSAAGLTASVIR-----DGSSR----E-FYLEGGAMVL-ADGGVVCIDEFDKMRP------EDRVAIHEAMEQQ 458 (726)
Q Consensus 397 ~~g-~~~~~~gl~~~~~~-----~~~~~----~-~~~~~G~l~l-a~~gvl~iDEi~~~~~------~~~~~L~~~me~~ 458 (726)
... ...+...+...+.. .+..+ . +..-...+.. ...-+++|||++.+.. +....|..++++.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI 171 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc
Confidence 221 11111111000000 00000 0 0000000000 1123899999999753 4445555665532
Q ss_pred eEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCc---hhhhcccCeeeEeccCCChhhhHHHHHHHHHHhh
Q 004862 459 TISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQ---TTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHA 535 (726)
Q Consensus 459 ~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~---~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~ 535 (726)
. ..+ ...++.+|+++|.+ ... ..+. +.+.+||...+.+.+...
T Consensus 172 ~----~~~----~~~~v~lI~~~~~~--------~~~--~~l~~~~~~~~~~~~~~i~l~~l~~---------------- 217 (412)
T 1w5s_A 172 P----SRD----GVNRIGFLLVASDV--------RAL--SYMREKIPQVESQIGFKLHLPAYKS---------------- 217 (412)
T ss_dssp C----CTT----SCCBEEEEEEEEET--------HHH--HHHHHHCHHHHTTCSEEEECCCCCH----------------
T ss_pred c----cCC----CCceEEEEEEeccc--------cHH--HHHhhhcchhhhhcCCeeeeCCCCH----------------
Confidence 1 001 02467888888632 011 1123 556667665454444332
Q ss_pred hcccccccccccCCHHHHHHHHHH-hHc-cCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHH
Q 004862 536 SADAVSADSKVSKEENWLKRYIQY-CRL-ECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRL 613 (726)
Q Consensus 536 ~~~~~~~~~~~~~~~~~L~~yi~~-a~~-~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirl 613 (726)
+.+..++.. +.. ...+.+++++.+.+.+... . .....+++|.+..+++.
T Consensus 218 ---------------~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~------~--------~~~~~G~p~~~~~l~~~ 268 (412)
T 1w5s_A 218 ---------------RELYTILEQRAELGLRDTVWEPRHLELISDVYG------E--------DKGGDGSARRAIVALKM 268 (412)
T ss_dssp ---------------HHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC------G--------GGTSCCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH------H--------hccCCCcHHHHHHHHHH
Confidence 222222211 010 0113477888877776520 0 00011899999999998
Q ss_pred HHHHHhhhCCCcccHHHHHHHHHHHh-hhhhhhhhcCccccccccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH---
Q 004862 614 SEALAKMKLSHVATENEVNEAVRLFT-VSTMDAARSGINQQVNLTAEMAHEIKQAETQIKRRIPIGNQISERRLIDD--- 689 (726)
Q Consensus 614 a~a~A~l~~~~~V~~~Dv~~ai~l~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 689 (726)
+...|.......|+.+++..|+.-.. .... ...+ ..++..++..+..+.. +.+ .....++..++++.
T Consensus 269 a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~----~~~l--~~l~~~~~~~l~aia~-l~~--~~~~~~~~~~~~~~~~~ 339 (412)
T 1w5s_A 269 ACEMAEAMGRDSLSEDLVRKAVSENEAASIQ----THEL--EALSIHELIILRLIAE-ATL--GGMEWINAGLLRQRYED 339 (412)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHC----------CCSS--SSSCHHHHHHHHHHHH-HHH--TTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhccchH----HHHH--HcCCHHHHHHHHHHHH-HHh--cCCCCccHHHHHHHHHH
Confidence 88888777778899999998875432 1111 0111 1234444333332222 111 11235666655432
Q ss_pred -H-HHcC---CCHHHHHHHHHHHHHCCeEEEec
Q 004862 690 -L-TRMG---MNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 690 -~-~~~g---~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
+ ...| ++...+.+.++.|.+.|+|....
T Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 340 ASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 3 4455 56788999999999999998764
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.93 E-value=3e-09 Score=110.10 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=79.5
Q ss_pred CCccCchhHHHHHHHHHh---CCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEE-eCCCCCCcccccc
Q 004862 334 PSIFGHDDVKKAVSCLLF---GGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVY-TSGKGSSAAGLTA 409 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~---~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~-~~g~~~~~~gl~~ 409 (726)
-+|.|.+.+|+.+...+. +....-..-|. .-..++||+||||||||+|+++++...+...+ ..|.....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l--~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~----- 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGL--VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN----- 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC--CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS-----
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC--CCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh-----
Confidence 457888888887754332 11000000011 11124999999999999999999998776533 22221100
Q ss_pred eeeecCCCchhhhccCce-e---ecCCCeEEecccCcCCHH-----------HHHHHHHHHhcceEeeeccceEEEeeCc
Q 004862 410 SVIRDGSSREFYLEGGAM-V---LADGGVVCIDEFDKMRPE-----------DRVAIHEAMEQQTISIAKAGITTVLNSR 474 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~G~l-~---la~~gvl~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~~~g~~~~l~~~ 474 (726)
. ..++..-.-+.+ . .....++++||++.+... ....++..|..+. -...
T Consensus 83 ~-----~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~ 146 (274)
T 2x8a_A 83 M-----YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQ 146 (274)
T ss_dssp S-----TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----------STTC
T ss_pred h-----hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----------ccCC
Confidence 0 001100000000 0 112358999999986421 2233444444322 0123
Q ss_pred eEEEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCC
Q 004862 475 TSVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIR 518 (726)
Q Consensus 475 ~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~ 518 (726)
+.++|++|.+. .+.+++++ |||..+.++.+.
T Consensus 147 ~i~ia~tn~p~-------------~LD~al~r~gRfd~~i~~~~P~ 179 (274)
T 2x8a_A 147 VFIMAATNRPD-------------IIDPAILRPGRLDKTLFVGLPP 179 (274)
T ss_dssp EEEEEEESCGG-------------GSCHHHHSTTSSCEEEECCSCC
T ss_pred EEEEeecCChh-------------hCCHhhcCcccCCeEEEeCCcC
Confidence 67889999641 26889988 999888765443
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.89 E-value=2.8e-08 Score=129.11 Aligned_cols=202 Identities=17% Similarity=0.164 Sum_probs=131.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEe--CCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT--SGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP 445 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~--~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~ 445 (726)
.++++.||||||||.+++++++.+++.+++ +..+.....+ +.. -.| ....|..+|+|||+++++
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l----------g~~--~~g--~~~~Gaw~~~DE~nr~~~ 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL----------SRL--LVG--ITQIGAWGCFDEFNRLDE 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH----------HHH--HHH--HHHHTCEEEEETTTSSCH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh----------hHH--HHH--HHhcCCEeeehhhhhcCh
Confidence 679999999999999999999999987654 2222221111 000 011 123467899999999999
Q ss_pred HHHHHH-------HHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 446 EDRVAI-------HEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 446 ~~~~~L-------~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
+.++.| +++|.++..++.-.|....++..+.|++|+||.++ ....+|++|.+||--+. + +.|
T Consensus 712 evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~---------g~~eLP~~Lk~~Fr~v~-m-~~P 780 (2695)
T 4akg_A 712 KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYN---------GRSELPENLKKSFREFS-M-KSP 780 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSS---------SSCCCCHHHHTTEEEEE-C-CCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCcc---------CcccccHHHHhheEEEE-e-eCC
Confidence 998887 77787777666677888899999999999999421 23459999999995333 2 223
Q ss_pred ChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 004862 519 MYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGEAA 598 (726)
Q Consensus 519 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~~~ 598 (726)
+.+ .++ +.+.++. .+...+.....+...|..+|..-.. ..
T Consensus 781 d~~---~i~---------------------------ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~-------q~ 820 (2695)
T 4akg_A 781 QSG---TIA---------------------------EMILQIM---GFEDSKSLASKIVHFLELLSSKCSS-------MN 820 (2695)
T ss_dssp CHH---HHH---------------------------HHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCC-------CT
T ss_pred CHH---HHH---------------------------HHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCc-------CC
Confidence 221 122 2222221 1234556667788888777764322 24
Q ss_pred CccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 004862 599 PIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRL 637 (726)
Q Consensus 599 ~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l 637 (726)
++..+.|.+.++++.|....+-. .-++.-+.+|++-
T Consensus 821 hydfglRalksvL~~ag~lkr~~---~~e~~~l~~al~~ 856 (2695)
T 4akg_A 821 HYHFGLRTLKGVLRNCSPLISEF---GEGEKTVVESLKR 856 (2695)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHS---CSSHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhhccC---CcHHHHHHHHHHH
Confidence 67779999999999876654433 2233344455543
No 84
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.87 E-value=1.3e-09 Score=105.09 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=84.7
Q ss_pred HHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCC-CCCCc
Q 004862 326 KTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSG-KGSSA 404 (726)
Q Consensus 326 ~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g-~~~~~ 404 (726)
+.+...-...++|++...+.++-.+..+ ...++||+||||||||++++.+++.+........ .+...
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 14 ALARAGKLDPVIGRDTEIRRAIQILSRR------------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHHhccccchhhcchHHHHHHHHHHhCC------------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 3344445667899998888887777543 1258999999999999999999876532110000 00000
Q ss_pred ccccceeee--cCCCchhh--hc--cCceeec-CCCeEEecccCcCC---------HHHHHHHHHHHhcceEeeeccceE
Q 004862 405 AGLTASVIR--DGSSREFY--LE--GGAMVLA-DGGVVCIDEFDKMR---------PEDRVAIHEAMEQQTISIAKAGIT 468 (726)
Q Consensus 405 ~gl~~~~~~--~~~~~~~~--~~--~G~l~la-~~gvl~iDEi~~~~---------~~~~~~L~~~me~~~i~i~~~g~~ 468 (726)
..+.+.... ....+.+. +. -..+..+ .+.+++|||++.+. .+.+..|...++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~---------- 151 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG---------- 151 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT----------
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC----------
Confidence 000000000 00001110 00 0001112 23499999999987 44556677766542
Q ss_pred EEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCe
Q 004862 469 TVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 469 ~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
++.+|+++|++ .......+.++|++||+.
T Consensus 152 -----~~~ii~~~~~~--------~~~~~~~~~~~l~~R~~~ 180 (187)
T 2p65_A 152 -----ELRCIGATTVS--------EYRQFIEKDKALERRFQQ 180 (187)
T ss_dssp -----CSCEEEEECHH--------HHHHHTTTCHHHHHHEEE
T ss_pred -----CeeEEEecCHH--------HHHHHHhccHHHHHhcCc
Confidence 46789999853 111224578999999995
No 85
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.87 E-value=2.2e-09 Score=103.71 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=88.4
Q ss_pred hHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeC-CCCC
Q 004862 324 AYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTS-GKGS 402 (726)
Q Consensus 324 ~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~-g~~~ 402 (726)
+-+.+...-+..++|++...+.+.-.+..+. ..++||+||||||||++++++++.+....+.. ..+.
T Consensus 12 l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~ 79 (195)
T 1jbk_A 12 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGR 79 (195)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTSSS------------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTC
T ss_pred HHHHHhhccccccccchHHHHHHHHHHhcCC------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCC
Confidence 3344445556779999998888877775531 26899999999999999999987653210000 0000
Q ss_pred Ccccccceeee--cCCCchhhhcc-Cc---eeecCC-CeEEecccCcCCH--------HHHHHHHHHHhcceEeeeccce
Q 004862 403 SAAGLTASVIR--DGSSREFYLEG-GA---MVLADG-GVVCIDEFDKMRP--------EDRVAIHEAMEQQTISIAKAGI 467 (726)
Q Consensus 403 ~~~gl~~~~~~--~~~~~~~~~~~-G~---l~la~~-gvl~iDEi~~~~~--------~~~~~L~~~me~~~i~i~~~g~ 467 (726)
....+.+.... ....+.+...- .. +..+.+ .+++|||++.+.+ ..+..|...++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--------- 150 (195)
T 1jbk_A 80 RVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------- 150 (195)
T ss_dssp EEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT---------
T ss_pred cEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC---------
Confidence 00001100000 00011110000 00 011233 3899999999963 3366677766543
Q ss_pred EEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCC
Q 004862 468 TTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIR 518 (726)
Q Consensus 468 ~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~ 518 (726)
++.+|+++|++ .......+.+++++||+. +.+..++
T Consensus 151 ------~~~~i~~~~~~--------~~~~~~~~~~~l~~r~~~-i~~~~p~ 186 (195)
T 1jbk_A 151 ------ELHCVGATTLD--------EYRQYIEKDAALERRFQK-VFVAEPS 186 (195)
T ss_dssp ------SCCEEEEECHH--------HHHHHTTTCHHHHTTEEE-EECCCCC
T ss_pred ------CeEEEEeCCHH--------HHHHHHhcCHHHHHHhce-eecCCCC
Confidence 45688888842 122234578999999983 4455444
No 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.84 E-value=1.7e-08 Score=120.98 Aligned_cols=215 Identities=13% Similarity=0.168 Sum_probs=109.2
Q ss_pred HHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe-CCCCCCc
Q 004862 326 KTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT-SGKGSSA 404 (726)
Q Consensus 326 ~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~-~g~~~~~ 404 (726)
+.....-...++|++...+.++-.|..+. ..|+||+||||||||++++.++..+...... .-.+...
T Consensus 162 ~~~r~~~ld~viGr~~~i~~l~~~l~~~~------------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 162 RLAAEGKLDPVIGRDEEIRRVIQILLRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHHCSS------------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred HHHhcCCCcccCCcHHHHHHHHHHHhcCC------------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 33333344568899888887777665441 2579999999999999999998865210000 0000000
Q ss_pred ccccceeee--cCCCchhhhcc-Ccee--e-c-CCCeEEecccCcCC--------HHHHHHHHHHHhcceEeeeccceEE
Q 004862 405 AGLTASVIR--DGSSREFYLEG-GAMV--L-A-DGGVVCIDEFDKMR--------PEDRVAIHEAMEQQTISIAKAGITT 469 (726)
Q Consensus 405 ~gl~~~~~~--~~~~~~~~~~~-G~l~--l-a-~~gvl~iDEi~~~~--------~~~~~~L~~~me~~~i~i~~~g~~~ 469 (726)
..+.++... ....+++.-.- ..+. . . ...|+||||++.+. .+..+.|..+++.+
T Consensus 230 ~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~----------- 298 (854)
T 1qvr_A 230 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG----------- 298 (854)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT-----------
T ss_pred EEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC-----------
Confidence 011111110 00011111000 0000 0 1 23499999999987 34445677777654
Q ss_pred EeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEeccCCChhhhHHHHHHHHHHhhhcccccccccccCC
Q 004862 470 VLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKDIRMYNQDKLIASHIIKIHASADAVSADSKVSKE 549 (726)
Q Consensus 470 ~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 549 (726)
.+.+|+|+|++ ......+.++|.+||+. +.+..+. .+.-..+.+.++..+.... ...++
T Consensus 299 ----~i~~I~at~~~---------~~~~~~~d~aL~rRf~~-i~l~~p~-~~e~~~iL~~~~~~~~~~~------~~~i~ 357 (854)
T 1qvr_A 299 ----ELRLIGATTLD---------EYREIEKDPALERRFQP-VYVDEPT-VEETISILRGLKEKYEVHH------GVRIS 357 (854)
T ss_dssp ----CCCEEEEECHH---------HHHHHTTCTTTCSCCCC-EEECCCC-HHHHHHHHHHHHHHHHHHT------TCEEC
T ss_pred ----CeEEEEecCch---------HHhhhccCHHHHhCCce-EEeCCCC-HHHHHHHHHhhhhhhhhhc------CCCCC
Confidence 35688888852 11114578899999996 4555444 4334455555554332211 13467
Q ss_pred HHHHHHHHHHhHccCCCC-CCHHHHHHHHHHHHHHH
Q 004862 550 ENWLKRYIQYCRLECHPR-LSESASAKLRDQYVQIR 584 (726)
Q Consensus 550 ~~~L~~yi~~a~~~~~p~-ls~ea~~~l~~~y~~~R 584 (726)
.+.+...+.++..++... +++.+.+.+.......|
T Consensus 358 ~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 358 DSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHH
Confidence 777777777776655543 34566666655544333
No 87
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.6e-08 Score=106.07 Aligned_cols=212 Identities=7% Similarity=0.037 Sum_probs=105.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC-----------cEEeCCCCCCcc-cc----cceeeecCCC-ch------hhhcc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI-----------AVYTSGKGSSAA-GL----TASVIRDGSS-RE------FYLEG 424 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~-----------~~~~~g~~~~~~-gl----~~~~~~~~~~-~~------~~~~~ 424 (726)
.+++|+||||||||++++++++.+.. .+++.+...... .. ...+.....+ +. ..+..
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~ 125 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITN 125 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 68999999999999999999776521 123332221100 00 0000000000 00 00000
Q ss_pred CceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhh
Q 004862 425 GAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTI 504 (726)
Q Consensus 425 G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~L 504 (726)
..-......|++|||+|.+. .|..|+..++-.. .-.+++.+|+.+|...- ....+.+++
T Consensus 126 ~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~d~---------~~~~L~~~v 184 (318)
T 3te6_A 126 VPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----------SKNSKLSIICVGGHNVT---------IREQINIMP 184 (318)
T ss_dssp SCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----------CSSCCEEEEEECCSSCC---------CHHHHHTCH
T ss_pred hhhccCCceEEEEecHHHhh--cchHHHHHHhccc----------ccCCcEEEEEEecCccc---------chhhcchhh
Confidence 00001123489999999998 5677777765211 01346889999995310 112356778
Q ss_pred hcccCe-eeEeccCCChhhhHHHHHHHHHHhhhc-c--cccccccc---cCCHHHHHHHHHHhHccCCCCCCHHHHHHHH
Q 004862 505 LSRFDL-IFIVKDIRMYNQDKLIASHIIKIHASA-D--AVSADSKV---SKEENWLKRYIQYCRLECHPRLSESASAKLR 577 (726)
Q Consensus 505 l~RFdl-i~~l~d~~~~~~d~~i~~~il~~~~~~-~--~~~~~~~~---~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~ 577 (726)
.|||.. ++.+++.. .+.-..|.++-+...... . ........ ++....-...-.-. ..+.+.++++|.+++.
T Consensus 185 ~SR~~~~~i~F~pYt-~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ai~~~A 262 (318)
T 3te6_A 185 SLKAHFTEIKLNKVD-KNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNV-IVINHKINNKITQLIA 262 (318)
T ss_dssp HHHTTEEEEECCCCC-HHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTE-EEECEECCHHHHHHHH
T ss_pred hccCCceEEEeCCCC-HHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccc-cccccccCHHHHHHHH
Confidence 899984 45555444 333344444433332110 0 00000000 00000000000000 0123468999999998
Q ss_pred HHHHHHHHHHhhhhcccCCCCCccCChhHHHHHHHHHHHHHh
Q 004862 578 DQYVQIRKDMRRQANETGEAAPIPITVRQLEAIVRLSEALAK 619 (726)
Q Consensus 578 ~~y~~~R~~~~~~~~~~~~~~~~~~t~R~L~~lirla~a~A~ 619 (726)
+.... ..+.+|....++|+|...|.
T Consensus 263 ~~vA~-----------------~~GD~R~Al~ilr~A~~~ae 287 (318)
T 3te6_A 263 KNVAN-----------------VSGSTEKAFKICEAAVEISK 287 (318)
T ss_dssp HHHHH-----------------HHCSHHHHHHHHHHHHHHHH
T ss_pred HHHHh-----------------hCChHHHHHHHHHHHHHHHH
Confidence 75221 23788999999999988775
No 88
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.60 E-value=5.9e-07 Score=95.59 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe----CCCCCC--------ccc
Q 004862 339 HDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT----SGKGSS--------AAG 406 (726)
Q Consensus 339 ~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~----~g~~~~--------~~g 406 (726)
++.+.+.+.-++..| +..+.+||+||||+|||++|+++++.+...... +|.-.+ ..+
T Consensus 7 ~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 455666666666555 222449999999999999999998754321100 000000 000
Q ss_pred ccceeeec---CCCc--hh-hh--ccCce-eecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 407 LTASVIRD---GSSR--EF-YL--EGGAM-VLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 407 l~~~~~~~---~~~~--~~-~~--~~G~l-~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
+. .+..+ ...+ +. .+ ..... ..+...|++|||+|.|+.+.+++|+..||+- +.++.+
T Consensus 76 ~~-~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~ 141 (334)
T 1a5t_A 76 YY-TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWF 141 (334)
T ss_dssp EE-EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEE
T ss_pred EE-EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEE
Confidence 00 00000 0000 00 00 00000 1234569999999999999999999999852 235666
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEecc
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKD 516 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d 516 (726)
|.+||.+ ..+.+++.||+. .+.+.+
T Consensus 142 Il~t~~~-------------~~l~~ti~SRc~-~~~~~~ 166 (334)
T 1a5t_A 142 FLATREP-------------ERLLATLRSRCR-LHYLAP 166 (334)
T ss_dssp EEEESCG-------------GGSCHHHHTTSE-EEECCC
T ss_pred EEEeCCh-------------HhCcHHHhhcce-eeeCCC
Confidence 7677632 247899999985 444443
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.58 E-value=4.2e-09 Score=124.94 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=86.9
Q ss_pred CCccCchhHHHHHHHHHhCCCcc-cCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRK-NLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~-~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
.+|.|.+.+|+.+.-.+.-.... ........+...++||+||||||||+||++++..+...++.. +...+.....
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v----~~~~l~~~~~ 552 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI----KGPELLTMWF 552 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC----CCSSSTTCCT
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE----echHhhhhhc
Confidence 45789999999887665432111 110111234446899999999999999999998876543321 0111111111
Q ss_pred ecCCCchhhhccCcee---ecCCCeEEecccCcCCH--------------HHHHHHHHHHhcceEeeeccceEEEeeCce
Q 004862 413 RDGSSREFYLEGGAMV---LADGGVVCIDEFDKMRP--------------EDRVAIHEAMEQQTISIAKAGITTVLNSRT 475 (726)
Q Consensus 413 ~~~~~~~~~~~~G~l~---la~~gvl~iDEi~~~~~--------------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~ 475 (726)
... .... ...+. ....+++||||||.+.. ..++.|+..|+... -..++
T Consensus 553 g~~-~~~i---~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v 617 (806)
T 1ypw_A 553 GES-EANV---REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNV 617 (806)
T ss_dssp TTS-SHHH---HHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CC
T ss_pred Ccc-HHHH---HHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----------ccCCe
Confidence 000 0000 00011 11236999999998632 22345555554321 12468
Q ss_pred EEEEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCCC
Q 004862 476 SVLAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIRM 519 (726)
Q Consensus 476 ~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~~ 519 (726)
.||||||++. .+++++++ |||.++.++.+..
T Consensus 618 ~vI~tTN~~~-------------~ld~allrpgRf~~~i~~~~p~~ 650 (806)
T 1ypw_A 618 FIIGATNRPD-------------IIDPAILRPGRLDQLIYIPLPDE 650 (806)
T ss_dssp BCCCCCBSCG-------------GGSCTTSSGGGTTSCCCCCCCCC
T ss_pred EEEEecCCcc-------------cCCHHHhCccccCceeecCCCCH
Confidence 8999999652 27889999 9997776655443
No 90
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=2.7e-07 Score=96.67 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=80.9
Q ss_pred CchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhC------CCcEE-eCCCCCCcccccce
Q 004862 338 GHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTA------PIAVY-TSGKGSSAAGLTAS 410 (726)
Q Consensus 338 G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~------~~~~~-~~g~~~~~~gl~~~ 410 (726)
||+.+.+.+.-++-.+ + ..+.||+||||+|||++++++++.. ...+. ..+.+. .....
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~~~id 65 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NIGID 65 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CBCHH
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---CCCHH
Confidence 6777777777777655 2 2789999999999999999998741 11111 111000 00000
Q ss_pred eeecCCCchhhhccCceeecCCCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCC
Q 004862 411 VIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDD 490 (726)
Q Consensus 411 ~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~ 490 (726)
.+++- .......| ..+...|++|||++.|+.+.+++|+..||+- |.++.+|.+||.+
T Consensus 66 ~ir~l-i~~~~~~p---~~~~~kvviIdead~lt~~a~naLLk~LEep-------------~~~t~fIl~t~~~------ 122 (305)
T 2gno_A 66 DIRTI-KDFLNYSP---ELYTRKYVIVHDCERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRW------ 122 (305)
T ss_dssp HHHHH-HHHHTSCC---SSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCG------
T ss_pred HHHHH-HHHHhhcc---ccCCceEEEeccHHHhCHHHHHHHHHHHhCC-------------CCCeEEEEEECCh------
Confidence 00100 00000001 1234569999999999999999999999963 2345555555521
Q ss_pred ccchhhhccCchhhhcccCeeeEeccCCChh
Q 004862 491 LKSAQDNIDLQTTILSRFDLIFIVKDIRMYN 521 (726)
Q Consensus 491 ~~~~~~~~~l~~~Ll~RFdli~~l~d~~~~~ 521 (726)
..+.+++.|| ++.+.+.++++
T Consensus 123 -------~kl~~tI~SR---~~~f~~l~~~~ 143 (305)
T 2gno_A 123 -------HYLLPTIKSR---VFRVVVNVPKE 143 (305)
T ss_dssp -------GGSCHHHHTT---SEEEECCCCHH
T ss_pred -------HhChHHHHce---eEeCCCCCHHH
Confidence 2488999999 77777766544
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.37 E-value=2.8e-07 Score=109.29 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCccCchhHHHHHHHHHhCCC-cccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceee
Q 004862 334 PSIFGHDDVKKAVSCLLFGGS-RKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVI 412 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~-~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~ 412 (726)
.+|.|++.+++.+.-.+.... ....-.....+...++||+||||||||+||++++..++..++. +.+...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~---------v~~~~l 274 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL---------INGPEI 274 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEE---------EEHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEE---------EEchHh
Confidence 458888776666543332100 0000011112344689999999999999999999988765432 111111
Q ss_pred ecCCCchhhhccC-ce---eecCCCeEEecccCcCCH-----------HHHHHHHHHHhcceEeeeccceEEEeeCceEE
Q 004862 413 RDGSSREFYLEGG-AM---VLADGGVVCIDEFDKMRP-----------EDRVAIHEAMEQQTISIAKAGITTVLNSRTSV 477 (726)
Q Consensus 413 ~~~~~~~~~~~~G-~l---~la~~gvl~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i 477 (726)
.....++..-.-+ .+ .....+++||||++.+.+ ..+..|+..|+... -..++.+
T Consensus 275 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~v 343 (806)
T 1ypw_A 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIV 343 (806)
T ss_dssp SSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEE
T ss_pred hhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEE
Confidence 1000111110000 01 112346999999987753 24566777776432 1246889
Q ss_pred EEecCCCCCcCCCccchhhhccCchhhhc--ccCeeeEeccCC
Q 004862 478 LAAANPPSGRYDDLKSAQDNIDLQTTILS--RFDLIFIVKDIR 518 (726)
Q Consensus 478 iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~--RFdli~~l~d~~ 518 (726)
|+|+|++. .+.+++.+ ||+..+.+..+.
T Consensus 344 I~atn~~~-------------~ld~al~r~gRf~~~i~i~~p~ 373 (806)
T 1ypw_A 344 MAATNRPN-------------SIDPALRRFGRFDREVDIGIPD 373 (806)
T ss_dssp EEECSCTT-------------TSCTTTTSTTSSCEEECCCCCC
T ss_pred ecccCCch-------------hcCHHHhcccccccccccCCCC
Confidence 99999752 24556655 888766554443
No 92
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.26 E-value=1.1e-05 Score=105.87 Aligned_cols=186 Identities=14% Similarity=0.231 Sum_probs=113.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEe--CCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYT--SGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP 445 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~--~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~ 445 (726)
....+.||+|||||.+++.+++.+++.+++ +..+.....+ +. +-.|+ ...|..+|+|||+++++
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~----------g~--i~~G~--~~~GaW~cfDEfNrl~~ 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM----------SR--IFVGL--CQCGAWGCFDEFNRLEE 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHH----------HH--HHHHH--HHHTCEEEEETTTSSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHH----------HH--HHhhH--hhcCcEEEehhhhcCCH
Confidence 556799999999999999999999998764 2222221111 00 11221 23467889999999999
Q ss_pred HHHHHHHHHHh---------cceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCeeeEecc
Q 004862 446 EDRVAIHEAME---------QQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVKD 516 (726)
Q Consensus 446 ~~~~~L~~~me---------~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~d 516 (726)
+..+.+.+.+. ..++.+. .|....++..+.|++|+||-+ .....+|+.|.+||--+. + .
T Consensus 671 ~vLSvv~~qi~~I~~a~~~~~~~~~~~-~G~~i~l~~~~~vfiTmNpgY---------~gr~eLP~nLk~lFr~v~-m-~ 738 (3245)
T 3vkg_A 671 RILSAVSQQIQTIQVALKENSKEVELL-GGKNISLHQDMGIFVTMNPGY---------AGRSNLPDNLKKLFRSMA-M-I 738 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCCG---------GGCCCSCHHHHTTEEEEE-C-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEec-CCCEEeecCCeEEEEEeCCCc---------cCcccChHHHHhhcEEEE-E-e
Confidence 99888777665 3343332 166778899999999999932 233469999999996533 2 2
Q ss_pred CCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 004862 517 IRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQYCRLECHPRLSESASAKLRDQYVQIRKDMRRQANETGE 596 (726)
Q Consensus 517 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~~~ 596 (726)
.|+. ..|+ +.+.|+.. + .-.......+...|.-.+..-. +
T Consensus 739 ~Pd~---~~i~---------------------------ei~L~s~G-f--~~a~~La~k~~~~~~l~~e~LS-------~ 778 (3245)
T 3vkg_A 739 KPDR---EMIA---------------------------QVMLYSQG-F--KTAEVLAGKIVPLFKLCQEQLS-------A 778 (3245)
T ss_dssp SCCH---HHHH---------------------------HHHHHTTT-C--SCHHHHHHHHHHHHHHHHHSSC-------C
T ss_pred CCCH---HHHH---------------------------HHHHHHcc-c--chHHHHHHHHHHHHHHHHHHhC-------C
Confidence 2211 1122 22222211 0 1123445556666654443221 1
Q ss_pred CCCccCChhHHHHHHHHHHHHHh
Q 004862 597 AAPIPITVRQLEAIVRLSEALAK 619 (726)
Q Consensus 597 ~~~~~~t~R~L~~lirla~a~A~ 619 (726)
..++-...|.+.++++.|-++-+
T Consensus 779 Q~HYDfGLRalKsVL~~AG~lkr 801 (3245)
T 3vkg_A 779 QSHYDFGLRALKSVLVSAGGIKR 801 (3245)
T ss_dssp CTTCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHH
Confidence 23566789999999988866544
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.25 E-value=3.8e-05 Score=81.38 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=36.9
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHHhCCCcEEe
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYT 397 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~~~~~~~~~ 397 (726)
+.++|.+.....+.-++..| ..++++|++|+|||+|++.+++..+ .+|.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--------------~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~ 60 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--------------PLTLLLGIRRVGKSSLLRAFLNERP-GILI 60 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--------------SEEEEECCTTSSHHHHHHHHHHHSS-EEEE
T ss_pred HhcCChHHHHHHHHHHHhcC--------------CeEEEECCCcCCHHHHHHHHHHHcC-cEEE
Confidence 34788888777766555433 4799999999999999999987764 4443
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.23 E-value=1.3e-06 Score=81.49 Aligned_cols=100 Identities=13% Similarity=0.209 Sum_probs=62.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC----cEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI----AVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKM 443 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~----~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~ 443 (726)
-.++|+||+|+|||+|+++++..... .+|..+.. + . .. + .+.+..+++|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~-----~-----~---~~-------~-~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS-----M-----P---LT-------D-AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT-----S-----C---CC-------G-GGGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH-----h-----h---HH-------H-HHhCCCEEEEeCcccc
Confidence 57999999999999999999876532 12211110 0 0 00 1 1234579999999999
Q ss_pred CHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccC
Q 004862 444 RPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFD 509 (726)
Q Consensus 444 ~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFd 509 (726)
++..+..|++.++... ..| ...+|.|+|.+...|. .. ++|.||+.
T Consensus 96 ~~~~~~~l~~li~~~~----~~g-------~~~iiits~~~p~~l~---------~~-~~L~SRl~ 140 (149)
T 2kjq_A 96 GNEEQALLFSIFNRFR----NSG-------KGFLLLGSEYTPQQLV---------IR-EDLRTRMA 140 (149)
T ss_dssp CSHHHHHHHHHHHHHH----HHT-------CCEEEEEESSCTTTSS---------CC-HHHHHHGG
T ss_pred ChHHHHHHHHHHHHHH----HcC-------CcEEEEECCCCHHHcc---------cc-HHHHHHHh
Confidence 8887888988887432 111 1225566673222221 13 88999986
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.13 E-value=3.2e-06 Score=81.99 Aligned_cols=114 Identities=20% Similarity=0.171 Sum_probs=63.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
-++|++||||||||++|.++++.....+. +++. . ...+.+. .+.+.-+++|||++......
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~------~fan-------s--~s~f~l~----~l~~~kIiiLDEad~~~~~~ 119 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI------SFVN-------S--TSHFWLE----PLTDTKVAMLDDATTTCWTY 119 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC------CCCC-------S--SSCGGGG----GGTTCSSEEEEEECHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee------eEEe-------c--cchhhhc----ccCCCCEEEEECCCchhHHH
Confidence 47999999999999999999887643322 1110 0 0111111 12334599999998532121
Q ss_pred -HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCe
Q 004862 448 -RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDL 510 (726)
Q Consensus 448 -~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdl 510 (726)
...+..+|+...+++.+....-......++|.|||-... + ..-.+.|.||+-.
T Consensus 120 ~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~---------~-~~~~~~L~SRi~~ 173 (212)
T 1tue_A 120 FDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPA---------K-DNRWPYLESRITV 173 (212)
T ss_dssp HHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTT---------S-SSSCHHHHTSCEE
T ss_pred HHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcc---------c-ccchhhhhhhEEE
Confidence 245666777666555322111111123578889995211 1 1123679999863
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.94 E-value=6e-05 Score=76.45 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhccCceeecCCCeEEecccCcCCHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPED 447 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~gvl~iDEi~~~~~~~ 447 (726)
-++||+||||||||+++.+++...+...-++... ..+.+.+ +.+.-+++.||.... .+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~----------------~~f~l~~----~~~k~i~l~Ee~~~~-~d~ 163 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTN----------------ENFPFND----CVDKMVIWWEEGKMT-AKV 163 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTC----------------SSCTTGG----GSSCSEEEECSCCEE-TTT
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcccceeeccc----------------ccccccc----ccccEEEEeccccch-hHH
Confidence 4799999999999999999998654321111100 0111111 123345566665544 455
Q ss_pred HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCC
Q 004862 448 RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANP 483 (726)
Q Consensus 448 ~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np 483 (726)
+..+..+++-..+.+.........-.++++|.+||-
T Consensus 164 ~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~ 199 (267)
T 1u0j_A 164 VESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT 199 (267)
T ss_dssp HHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred HHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecC
Confidence 677888888766665432221112246788889984
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.93 E-value=2.1e-06 Score=82.51 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=57.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeeecCCCchhhhc-cCc--eeecCCCeEEecccC--c
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLE-GGA--MVLADGGVVCIDEFD--K 442 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~~~~~~~~~~~-~G~--l~la~~gvl~iDEi~--~ 442 (726)
.+++|+||||||||+|+++++...... .|..... ++..-..+.....+... ... -.+.+..+++|||++ .
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEK---KGIRGYF--FDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSER 113 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHH---SCCCCCE--EEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH---cCCeEEE--EEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCc
Confidence 679999999999999999998766311 0100000 11100000000000000 000 013356799999998 5
Q ss_pred CCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCC
Q 004862 443 MRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPS 485 (726)
Q Consensus 443 ~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~ 485 (726)
+++..+..|++.++... ....++|.+||.+.
T Consensus 114 ~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 114 LSDWQRELISYIITYRY------------NNLKSTIITTNYSL 144 (180)
T ss_dssp CCHHHHHHHHHHHHHHH------------HTTCEEEEECCCCS
T ss_pred CCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCCh
Confidence 77888888888886532 12357888999643
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.68 E-value=2.9e-06 Score=89.04 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.+++|+||||||||+||++++..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999987654
No 99
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.56 E-value=9.8e-06 Score=79.19 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.+++|+||||||||+||++++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.50 E-value=0.0065 Score=64.00 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=28.4
Q ss_pred CHHHHHHHHH-HcC--CCHHHHHHHHHHHHHCCeEEEec
Q 004862 682 SERRLIDDLT-RMG--MNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 682 ~~~~l~~~~~-~~g--~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
+..+|.+.+. ..| ++..++.+.|+.|.+.|+|....
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~ 342 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG 342 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC
Confidence 6777655443 357 89999999999999999998754
No 101
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.46 E-value=0.00075 Score=71.59 Aligned_cols=176 Identities=15% Similarity=0.081 Sum_probs=103.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC-C---c--EEeCCCCCCcccccceeeecCCCchhh---hccCce-eecCCCeEEe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP-I---A--VYTSGKGSSAAGLTASVIRDGSSREFY---LEGGAM-VLADGGVVCI 437 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~-~---~--~~~~g~~~~~~gl~~~~~~~~~~~~~~---~~~G~l-~la~~gvl~i 437 (726)
...||+||+|+||++.++.+++... . . .+.. +. ...+. -..... ..++.-+++|
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~-~~~~~~l~~~~~~~plf~~~kvvii 82 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI---------------DP-NTDWNAIFSLCQAMSLFASRQTLLL 82 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC---------------CT-TCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe---------------cC-CCCHHHHHHHhcCcCCccCCeEEEE
Confidence 5789999999999999998866431 1 1 1100 00 00110 000000 1345569999
Q ss_pred cccCc-CCHHHHHHHHHHHhcceEeeeccceEEEeeCceEE-EEecCCCCCcCCCccchhhhccCchhhhcccCeeeEec
Q 004862 438 DEFDK-MRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSV-LAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLIFIVK 515 (726)
Q Consensus 438 DEi~~-~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~i-iaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli~~l~ 515 (726)
||.+. |+.+.+++|+..+|+- |..+.+ ++++++. .......+.+++.+|.- ++.+.
T Consensus 83 ~~~~~kl~~~~~~aLl~~le~p-------------~~~~~~il~~~~~~--------~~~~~~k~~~~i~sr~~-~~~~~ 140 (343)
T 1jr3_D 83 LLPENGPNAAINEQLLTLTGLL-------------HDDLLLIVRGNKLS--------KAQENAAWFTALANRSV-QVTCQ 140 (343)
T ss_dssp ECCSSCCCTTHHHHHHHHHTTC-------------BTTEEEEEEESCCC--------TTTTTSHHHHHHTTTCE-EEEEC
T ss_pred ECCCCCCChHHHHHHHHHHhcC-------------CCCeEEEEEcCCCC--------hhhHhhHHHHHHHhCce-EEEee
Confidence 99999 9999999999999851 223444 4444421 11122346778888874 44444
Q ss_pred cCCChhhhHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHH-hHccCCCCCCHHHHHHHHHHHHHHHHHHhhhhccc
Q 004862 516 DIRMYNQDKLIASHIIKIHASADAVSADSKVSKEENWLKRYIQY-CRLECHPRLSESASAKLRDQYVQIRKDMRRQANET 594 (726)
Q Consensus 516 d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~L~~yi~~-a~~~~~p~ls~ea~~~l~~~y~~~R~~~~~~~~~~ 594 (726)
+....+ +.+|+.. +++ -.-.+++++.+.|...
T Consensus 141 ~l~~~~-------------------------------l~~~l~~~~~~-~g~~i~~~a~~~l~~~--------------- 173 (343)
T 1jr3_D 141 TPEQAQ-------------------------------LPRWVAARAKQ-LNLELDDAANQVLCYC--------------- 173 (343)
T ss_dssp CCCTTH-------------------------------HHHHHHHHHHH-TTCEECHHHHHHHHHS---------------
T ss_pred CCCHHH-------------------------------HHHHHHHHHHH-cCCCCCHHHHHHHHHH---------------
Confidence 433221 2222221 111 2335889999988875
Q ss_pred CCCCCccCChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 004862 595 GEAAPIPITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVR 636 (726)
Q Consensus 595 ~~~~~~~~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~ 636 (726)
..++.|.+.+.+......+ ....|+.+||.+.+.
T Consensus 174 -----~~gdl~~~~~elekl~l~~---~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 174 -----YEGNLLALAQALERLSLLW---PDGKLTLPRVEQAVN 207 (343)
T ss_dssp -----STTCHHHHHHHHHHHHHHC---TTCEECHHHHHHHHH
T ss_pred -----hchHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHh
Confidence 4578888888876544333 245799999987764
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.22 E-value=0.0004 Score=67.65 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=39.3
Q ss_pred CCeEEecccCcC--CH-HH--HHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhc
Q 004862 432 GGVVCIDEFDKM--RP-ED--RVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILS 506 (726)
Q Consensus 432 ~gvl~iDEi~~~--~~-~~--~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~ 506 (726)
+.+++|||.+.+ +. +. ...++..++... .....||.+++++ ..+..++.+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~~-------------~~l~~~lr~ 142 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQGP-------------KLLDQNLRT 142 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESCG-------------GGBCHHHHT
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCCH-------------HHHhHHHHH
Confidence 789999999998 22 11 113455555322 1235677777752 236777999
Q ss_pred ccCeeeEeccC
Q 004862 507 RFDLIFIVKDI 517 (726)
Q Consensus 507 RFdli~~l~d~ 517 (726)
|++..+.+...
T Consensus 143 ri~~~~~l~~~ 153 (199)
T 2r2a_A 143 LVRKHYHIASN 153 (199)
T ss_dssp TEEEEEEEEEC
T ss_pred HhheEEEEcCc
Confidence 99988888763
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.85 E-value=0.0012 Score=63.43 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=38.3
Q ss_pred CCeEEecccCcCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhhcccCee
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTILSRFDLI 511 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll~RFdli 511 (726)
..+++|||+..++++....|...++++. .|+.+... ..|. ..-+...+.|+++.|.+
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~----------------~Vi~~Gl~--~~f~-----~~~f~~~~~ll~~ad~v 133 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGI----------------DVFCAGLD--LTHK-----QNPFETTALLLSLADTV 133 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTC----------------EEEEEEES--BCTT-----SCBCHHHHHHHHHCSEE
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCC----------------CEEEEeec--cccc-----cCCccchHHHHHHhhhe
Confidence 3599999999998877777777766532 22222211 0010 01123456789999988
Q ss_pred eEeccCC
Q 004862 512 FIVKDIR 518 (726)
Q Consensus 512 ~~l~d~~ 518 (726)
..+....
T Consensus 134 ~~l~~ic 140 (184)
T 2orw_A 134 IKKKAVC 140 (184)
T ss_dssp EECCBCC
T ss_pred EEeeeec
Confidence 7765544
No 104
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.04 E-value=0.021 Score=56.23 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.8
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHh
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
||.++|++.|+||+|||+++-.++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH
Confidence 67799999999999999997665433
No 105
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.75 E-value=0.0069 Score=66.88 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=21.8
Q ss_pred CCCeEEecccCcCCHHHHHHHHHHHh
Q 004862 431 DGGVVCIDEFDKMRPEDRVAIHEAME 456 (726)
Q Consensus 431 ~~gvl~iDEi~~~~~~~~~~L~~~me 456 (726)
...+++|||+..++...+..|...+.
T Consensus 128 ~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 128 KCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp SCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred CCCEEEEECchhCCHHHHHHHHHhcc
Confidence 45799999999999988888877764
No 106
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.29 E-value=0.033 Score=63.72 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHH
Q 004862 339 HDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 339 ~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+.=+.|+..++-+ ..+++.|+||||||+++.++..
T Consensus 151 ~~~Q~~Ai~~~l~~---------------~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 151 INWQKVAAAVALTR---------------RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp CCHHHHHHHHHHTB---------------SEEEEECCTTSTHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC---------------CCEEEEeCCCCCHHHHHHHHHH
Confidence 34456666666532 4799999999999998877643
No 107
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.02 E-value=0.014 Score=55.07 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..|+|+|+||+|||++++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~ 31 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPW 31 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 4689999999999999999999876543
No 108
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=95.00 E-value=0.083 Score=41.30 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeE
Q 004862 665 KQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRV 721 (726)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~ 721 (726)
++|++.|.+. +.+++..+| ++.+|+++.++.+.|+.|.+.|+|..++.|+.
T Consensus 13 ~~IL~~L~~~---~~~~s~~eL---A~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y 63 (67)
T 2heo_A 13 QKILQVLSDD---GGPVAIFQL---VKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYW 63 (67)
T ss_dssp HHHHHHHHHH---CSCEEHHHH---HHHHCSCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHc---CCCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCcEecCCCceE
Confidence 4567777642 346788888 88899999999999999999999998888875
No 109
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.83 E-value=0.017 Score=54.20 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
..+.|+|+||+|||++++.++..++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNME 31 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 469999999999999999999887643
No 110
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.82 E-value=0.025 Score=64.07 Aligned_cols=23 Identities=39% Similarity=0.378 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
-.+++.|+||||||+++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999988654
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.55 E-value=0.018 Score=54.73 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.+|+|+|+||+|||++++.+++.+...++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 57999999999999999999987654443
No 112
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.36 E-value=0.02 Score=53.95 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
+++|+|+||+|||++++.+++.++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~ 32 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVF 32 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 589999999999999999998765443
No 113
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.24 E-value=0.025 Score=54.64 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..++|+|+||+|||++++.+++.+...+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 5799999999999999999998765443
No 114
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.23 E-value=0.031 Score=53.18 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHh-CCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT-API 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~-~~~ 393 (726)
.+|+|+|+||+|||++++.+++. .+.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~ 37 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGF 37 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999999987 443
No 115
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.19 E-value=0.046 Score=44.04 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCe
Q 004862 664 IKQAETQIKRRIPI--GNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERR 720 (726)
Q Consensus 664 ~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~ 720 (726)
.+.|++.|++.... +.+++..+| ++.+|+|..++++.|+.|.++|+|....+|+
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EI---a~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDI---ADAAGLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHH---HHHHCCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 45566777665322 346777877 8888999999999999999999999876554
No 116
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.19 E-value=0.024 Score=52.88 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=24.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.+++|+|.||+|||++++.+++.+...++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 47999999999999999999987655444
No 117
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.17 E-value=0.048 Score=54.82 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..++|+|+||+|||++++.++..++.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 67999999999999999999987753
No 118
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.10 E-value=0.024 Score=52.84 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=22.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
.|+|+|+||+|||++++.+++.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 58999999999999999998876543
No 119
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.07 E-value=0.2 Score=39.51 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeE
Q 004862 660 MAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRV 721 (726)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~ 721 (726)
..+..+++++++++. +.+++-.+| ++..|++..++..+|..|.+.|.|..+++-.+
T Consensus 17 ~~d~eekVLe~Lkea---G~PlkageI---ae~~GvdKKeVdKaik~LKkEgkI~SPkRCyw 72 (80)
T 2lnb_A 17 EGHLEQRILQVLTEA---GSPVKLAQL---VKECQAPKRELNQVLYRMKKELKVSLTSPATW 72 (80)
T ss_dssp HHHHHHHHHHHHHHH---TSCEEHHHH---HHHHTSCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred cchHHHHHHHHHHHc---CCCCCHHHH---HHHHCCCHHHHHHHHHHHHHcCCccCCCCcee
Confidence 344456788888876 457888888 77789999999999999999999999977554
No 120
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.07 E-value=0.025 Score=53.74 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=21.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
++.|+||+|+|||+|++.++...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999988765
No 121
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.99 E-value=0.03 Score=52.90 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.+|+|+|+||+|||++++.+++.++..++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 57999999999999999999887654443
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.97 E-value=0.034 Score=51.70 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=22.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
--+.|+||.|+|||+|++.++...|
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5689999999999999999999874
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.92 E-value=0.05 Score=57.74 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.6
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.++++||+|+|||++++++....+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 799999999999999999977654
No 124
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.92 E-value=0.071 Score=53.97 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.++|+||+|+|||++++.+....+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC
Confidence 5799999999999999999987653
No 125
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.90 E-value=0.026 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+|+|+||+|||++++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999987
No 126
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.83 E-value=0.1 Score=51.42 Aligned_cols=21 Identities=14% Similarity=-0.116 Sum_probs=16.9
Q ss_pred ceEEEECCCchhHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~ 388 (726)
.-++++|+||+|||+++..++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 457889999999999776553
No 127
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.81 E-value=0.037 Score=53.98 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
+|+|+|+||+|||++++.+++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999887654443
No 128
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.78 E-value=0.082 Score=54.27 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-++|+|+||+|||++++.++...+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988764
No 129
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.75 E-value=0.036 Score=51.53 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..|+|+|+||+|||++++.+ ...+..++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 36899999999999999999 65554443
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.73 E-value=0.029 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..+.|+|+||+|||++++.++..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56999999999999999999876
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.69 E-value=0.032 Score=53.14 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=22.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.+.|+|+||+|||++++.++......++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~~~ 31 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY 31 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCeEE
Confidence 5789999999999999999875433333
No 132
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.67 E-value=0.045 Score=52.69 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-+.|+||+|+|||++++.++...|
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999876
No 133
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.56 E-value=0.034 Score=52.67 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=23.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.|+|+|+||+|||++++.+++.++..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 5899999999999999999986654433
No 134
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.55 E-value=0.044 Score=52.78 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=23.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..|+|+|+||+|||++++.+++.++..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~ 48 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQ 48 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 5799999999999999999988655433
No 135
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.50 E-value=0.038 Score=52.37 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..+.|+||+|+|||+|++.+....+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 46899999999999999999988763
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.45 E-value=0.039 Score=52.07 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=20.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..|+|+|.||+|||++++.+++.++..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46999999999999999999987765444
No 137
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.37 E-value=0.049 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..++|+|+||+|||++++.++...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 5699999999999999999988653
No 138
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.34 E-value=0.04 Score=51.44 Aligned_cols=28 Identities=4% Similarity=0.119 Sum_probs=23.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.|+|+|+||+|||++++.+++.++..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999987654433
No 139
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.25 E-value=0.043 Score=53.47 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=22.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.|+|+|+||+|||++++.+++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 5899999999999999999776554333
No 140
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.20 E-value=0.041 Score=55.39 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=23.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.++|+|+||+|||++++.++...+..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i 30 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVV 30 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEE
Confidence 4789999999999999999887664443
No 141
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.19 E-value=0.041 Score=53.04 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=22.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..|+|+|+||+|||++++.++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999887643
No 142
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.18 E-value=0.047 Score=57.00 Aligned_cols=80 Identities=9% Similarity=0.134 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHhcCc------chHHHHHHhhcCCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCc
Q 004862 304 AAAFTQEEIEKFKKFASQP------DAYKTVCSKIAPSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPS 377 (726)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~------~~~~~l~~si~p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pG 377 (726)
...+|++|++.++.+...- ++|.-|+..+.- .+|....-+.+...+.+... .....-+.|.|++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~-~~~~~~~l~~~~~~~l~~~~--------~~~p~iigI~GpsG 102 (321)
T 3tqc_A 32 PLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSF-YVTARQTLQQATYQFLGKPE--------PKVPYIIGIAGSVA 102 (321)
T ss_dssp -CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHTCCC--------CCCCEEEEEECCTT
T ss_pred CCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHhccCC--------CCCCEEEEEECCCC
Confidence 4568999988877664322 344444443322 24544444555555555421 11225789999999
Q ss_pred hhHHHHHHHHHHhCC
Q 004862 378 TAKSQFLKFVEKTAP 392 (726)
Q Consensus 378 tGKt~la~~i~~~~~ 392 (726)
+|||++++.+..+..
T Consensus 103 SGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 103 VGKSTTSRVLKALLS 117 (321)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999988764
No 143
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.14 E-value=0.049 Score=53.30 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=24.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..|+|+|+||+|||++++.+++.+...+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~ 32 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAH 32 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceE
Confidence 6799999999999999999988765433
No 144
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.13 E-value=0.048 Score=51.88 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..|+|+|+||+|||++++.+++.++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 57999999999999999999876543
No 145
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.13 E-value=0.046 Score=51.74 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..++|+|+||+|||++++.+++.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999876543
No 146
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=93.08 E-value=0.41 Score=38.86 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEe
Q 004862 664 IKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYK 716 (726)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~ 716 (726)
..+|++.|++. +-+..++..+| |+++|+++.++.+.|..|.+.|+|...
T Consensus 12 ~~~IL~~L~~~-~pg~~~t~~eL---A~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 12 EQRILKFLEEL-GEGKATTAHDL---SGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHH-CTTCCBCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 34567777754 32346777877 888999999999999999999999875
No 147
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.05 E-value=0.038 Score=53.83 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=22.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
.|+|.||||+||++.|+.+++...-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ 28 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH 28 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 588999999999999999998765443
No 148
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.03 E-value=0.048 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..++|+|+||+|||++++.++...+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 56899999999999999999988763
No 149
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.02 E-value=0.05 Score=50.53 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
.|+|+|.||+|||++++.+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 28 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 589999999999999999998655433
No 150
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.02 E-value=0.053 Score=52.28 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..+.|+|+||+|||++++.++...+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5689999999999999999988763
No 151
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.89 E-value=0.055 Score=52.09 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..+.|+|++|+|||++++.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578999999999999999999877
No 152
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.85 E-value=0.055 Score=51.57 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=24.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..|+|+|+||+|||++++.+++.++..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 57999999999999999999876654433
No 153
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.76 E-value=0.054 Score=51.48 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..|+|+|+||+|||++++.+++.++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56999999999999999999876543
No 154
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.74 E-value=0.05 Score=51.57 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..|+|+|+||+|||++++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999988654
No 155
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.70 E-value=0.047 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.4
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.|+|+|+||+|||++++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988654
No 156
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.65 E-value=0.066 Score=53.82 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=24.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..|.|+|++|+|||++++.++..+...++
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 57999999999999999999987665444
No 157
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=92.61 E-value=0.13 Score=41.60 Aligned_cols=46 Identities=9% Similarity=0.147 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEe
Q 004862 664 IKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYK 716 (726)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~ 716 (726)
+.+|++.|++. +.++.++| ++.+|+|+.++++.|+.|.++|.|.+.
T Consensus 4 L~~Il~~L~~~----g~vsv~eL---a~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 4 LIQVRDLLALR----GRMEAAQI---SQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHS----CSBCHHHH---HHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCCcHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34556666543 46788888 888999999999999999999999888
No 158
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.56 E-value=0.082 Score=50.51 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.7
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
+|+|+||+|+|||+|++.+....|..+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 589999999999999999988877544
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.49 E-value=0.049 Score=53.39 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=22.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..+.|+|+||+|||++++.++...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999986543
No 160
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.48 E-value=0.058 Score=52.41 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.-+.|+||+|+|||++++.++...+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46889999999999999999988764
No 161
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.46 E-value=0.068 Score=52.59 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=24.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..|+|+|+||+|||++++.+++.+....
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~ 35 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKH 35 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 5799999999999999999998765443
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.43 E-value=0.07 Score=51.42 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..+.|+|++|+|||++++.++..++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988763
No 163
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.41 E-value=0.058 Score=51.58 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=23.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..|+|+|+||+|||++++.+++.++...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 40 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTH 40 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4699999999999999999998765433
No 164
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.37 E-value=0.059 Score=51.13 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=23.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..|+|+|+||+|||++++.+++.++..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 34 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVH 34 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4689999999999999999988655433
No 165
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.35 E-value=0.068 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=22.2
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.|.|+|+||+|||++++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5889999999999999999987654
No 166
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.23 E-value=0.05 Score=53.44 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
--|+|+||||+||++.++.+++...-.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 357889999999999999998876543
No 167
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.23 E-value=0.062 Score=53.68 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..|+|.|+||+|||++++.+++..+...+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 67999999999999999999876654443
No 168
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.17 E-value=0.059 Score=52.05 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..|+|.|+||+|||++++.+++.++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5699999999999999999988654
No 169
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.15 E-value=0.081 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..|+|+|+||+|||++++.+++.+...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~ 44 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCH 44 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 5799999999999999999998765443
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.14 E-value=0.068 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
.+.|+||+|+|||++++.++...+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 47899999999999999999988744
No 171
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.14 E-value=0.068 Score=52.06 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=22.7
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
+|+|+|+||+|||++++.+++..+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~ 28 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQ 28 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 589999999999999999988654433
No 172
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.03 E-value=0.13 Score=64.70 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=24.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC----CCcEEeCCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA----PIAVYTSGKG 401 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~----~~~~~~~g~~ 401 (726)
..+|++||||||||+||.+++... ...+|++...
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEccc
Confidence 459999999999999999886533 2345554433
No 173
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.96 E-value=0.093 Score=50.45 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..|+|+|+||+|||++++.+++..+..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~ 43 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVH 43 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceE
Confidence 4699999999999999999998765433
No 174
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.92 E-value=0.076 Score=51.92 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..|+|+|+||+|||++++.+++.+...++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 57999999999999999999887654433
No 175
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.90 E-value=0.092 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
--+.|+||+|+|||+|++.++.+.+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999999886
No 176
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.85 E-value=0.095 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.8
Q ss_pred cCcceEEEECCCchhHHHHHHHHHH
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
+....|+++|++|+|||+|+..+..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4458999999999999999998864
No 177
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.80 E-value=0.1 Score=49.46 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.6
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHh
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
+..+.|+++|++|+|||+|++++...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44589999999999999999998764
No 178
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.73 E-value=0.1 Score=51.10 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
--+.|+||+|+|||+|++.++...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999998743
No 179
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.67 E-value=0.073 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..+.|+||+|+|||+|++.+....+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999988765
No 180
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.63 E-value=0.07 Score=52.25 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..|+|+|+||+|||++++.+++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999887654
No 181
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.59 E-value=0.078 Score=52.92 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..+.|+|+||+|||++++.+++..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998544
No 182
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.54 E-value=0.093 Score=55.78 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.++|+|++|+|||+|++++....+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 57999999999999999999887653
No 183
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.52 E-value=0.095 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
.|+|+|+||+|||++++.+++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~ 27 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLA 27 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 48999999999999999998865443
No 184
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.42 E-value=0.1 Score=50.30 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.-+.|+||+|+|||+|++.+....+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 46889999999999999999988764
No 185
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.41 E-value=0.11 Score=49.95 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.|.|+|++|+|||++++.++. ..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 589999999999999999998 54
No 186
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.33 E-value=0.085 Score=52.35 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=24.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
..+.|.|+||+|||++++.+++.+....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 6899999999999999999988765433
No 187
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.33 E-value=0.075 Score=49.86 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=17.9
Q ss_pred ceEEEECCCchhHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFV 387 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i 387 (726)
--+.|+|++|+|||+|++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999973
No 188
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.27 E-value=0.11 Score=49.71 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=22.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..|.|+|+||+|||++++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 189
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.23 E-value=0.1 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.+....+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 46889999999999999999998873
No 190
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.21 E-value=0.098 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..+.|+|++|+|||+|++.++...+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999999988765
No 191
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.19 E-value=0.13 Score=48.82 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..++|+|.||+|||++++.++..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999987653
No 192
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.19 E-value=0.11 Score=50.78 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=22.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++...|
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999999886
No 193
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.16 E-value=0.095 Score=54.41 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..+||+||||+|||+|+..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 34799999999999999998764
No 194
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.14 E-value=0.13 Score=53.24 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
-.+.|+||+|+|||+|++.++.+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 679999999999999999999887
No 195
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.11 E-value=0.097 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|+|+|.||+|||++++.++..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999876
No 196
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.92 E-value=0.16 Score=56.58 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=24.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
.+++++||+|+|||++++++....+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 579999999999999999999888753
No 197
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.87 E-value=0.13 Score=51.62 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=24.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..|.|+|++|+|||++++.+++.+....+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 57999999999999999999977765443
No 198
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.87 E-value=0.13 Score=54.96 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=22.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..++|+||||+|||+|++.++.....
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 57999999999999999999976543
No 199
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.86 E-value=0.1 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=21.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
-.+.|+||+|+|||+|++.++.+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999988
No 200
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.85 E-value=0.083 Score=57.35 Aligned_cols=87 Identities=14% Similarity=-0.009 Sum_probs=44.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEEeCCCCCCcccccceeee-----c-C---CC-chhhhccCceeecCCCeEEe
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR-----D-G---SS-REFYLEGGAMVLADGGVVCI 437 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~~~g~~~~~~gl~~~~~~-----~-~---~~-~~~~~~~G~l~la~~gvl~i 437 (726)
--.++.|+||+|||+++...+... +....+.+......+...+.. . . .| ..|...++.....+..+++|
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~~-~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~lii 240 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNFE-EDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFI 240 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCTT-TCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHhccC-CeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEE
Confidence 346899999999999997765431 222222111111111101100 0 0 00 01112222111112569999
Q ss_pred cccCcCCHHHHHHHHHHH
Q 004862 438 DEFDKMRPEDRVAIHEAM 455 (726)
Q Consensus 438 DEi~~~~~~~~~~L~~~m 455 (726)
||..+++......++.+.
T Consensus 241 DE~sm~~~~~l~~l~~~~ 258 (446)
T 3vkw_A 241 DEGLMLHTGCVNFLVEMS 258 (446)
T ss_dssp ETGGGSCHHHHHHHHHHT
T ss_pred eCcccCCHHHHHHHHHhC
Confidence 999999988777666554
No 201
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.80 E-value=0.11 Score=49.30 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=20.7
Q ss_pred eEEEECCCchhHHHHHHHHHHhC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.|.|+|+||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998865
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.68 E-value=0.13 Score=49.72 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..+.|+|+||+|||++++.++...+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 203
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.64 E-value=0.29 Score=48.30 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=22.3
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
....|+|+|++|+|||+|+..+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 34789999999999999999987643
No 204
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.54 E-value=0.11 Score=50.22 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=21.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..|.|+|+||+|||++++.+++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998764
No 205
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.49 E-value=0.15 Score=53.11 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=24.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..++|+||||+|||++++.+++..+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~ii 34 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELI 34 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 36899999999999999999998875444
No 206
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.47 E-value=0.13 Score=48.90 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEECCCchhHHHHHHHHHHhC
Q 004862 370 VLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~~ 391 (726)
|.|.|++|+|||++++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998875
No 207
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.45 E-value=0.11 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.1
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..+.|+|++|+|||++++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999987
No 208
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.37 E-value=0.22 Score=52.35 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
.+++|+|+||+|||++++.++..+...
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 579999999999999999998876543
No 209
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.36 E-value=0.12 Score=51.25 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.2
Q ss_pred ceEEEECCCchhHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~ 388 (726)
--+.|+||+|+|||+|++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 568899999999999999887
No 210
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.31 E-value=0.14 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..|.|+|+||+|||++++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998754
No 211
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.30 E-value=0.17 Score=48.34 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=21.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|.|+|++|+|||++++.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999986
No 212
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.25 E-value=0.13 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46889999999999999999987654
No 213
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.22 E-value=0.13 Score=51.14 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5789999999999999999986654
No 214
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.17 E-value=0.14 Score=49.12 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.|.|.|++|+|||++++.++..++..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~ 31 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYL 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 5899999999999999999987665444
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.14 E-value=0.12 Score=52.42 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.++.|+||+|+|||+|++.++.....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 67999999999999999999877543
No 216
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.12 E-value=1.1 Score=35.82 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEec
Q 004862 665 KQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
..|++.|++. +.+..++..+| |+++|+++.++.+.|..|.+.|+|....
T Consensus 17 ~~IL~~L~~~-~~~~~~t~~eL---A~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEEL-GEGKATTAHDL---SGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHH-CSSSCEEHHHH---HHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHc-CCCCCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 4567777765 32346777777 8889999999999999999999998753
No 217
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.08 E-value=0.17 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..+.|+|++|+|||++++.++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999998864
No 218
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.07 E-value=0.15 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.1
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+|+++|+||+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999988765
No 219
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.03 E-value=0.15 Score=46.64 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.8
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.++|+++|++|+|||+|++.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 37899999999999999999875
No 220
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.97 E-value=0.16 Score=47.88 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.4
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
...|+++|++|+|||+|++++....+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 37899999999999999998876543
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.95 E-value=0.16 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
-.++|+|+||+|||+|++.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999998744
No 222
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.92 E-value=0.15 Score=49.22 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..+.|+|++|+|||++++.++...+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999998765
No 223
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.91 E-value=0.12 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5688999999999999999987654
No 224
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.91 E-value=0.2 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..|+|+|+||+|||++++.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999999854
No 225
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.89 E-value=0.15 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.3
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+|+++|++|+|||+|++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 7899999999999999998875
No 226
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.75 E-value=0.18 Score=48.87 Aligned_cols=26 Identities=12% Similarity=0.360 Sum_probs=22.3
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
...+|+++|++|+|||+|+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999987643
No 227
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.75 E-value=0.15 Score=46.88 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.8
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+++|+||+|||+|++.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 6799999999999999998863
No 228
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.73 E-value=0.16 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..+.|+|++|+|||+|++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 679999999999999999998754
No 229
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.72 E-value=0.28 Score=51.26 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..|+|+||+|+|||+|+..+++.++..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiI 69 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVI 69 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEE
Confidence 46899999999999999999998875544
No 230
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.72 E-value=0.16 Score=47.76 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=21.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+|+||+|+|||+|+++|..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999988765
No 231
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=89.65 E-value=0.92 Score=40.03 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=35.0
Q ss_pred CCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEE
Q 004862 678 GNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 678 ~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~ 723 (726)
+..+ |..+| ++++|+|+.++++++..|...|+|....++...+
T Consensus 34 g~~Lps~~~L---a~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 77 (125)
T 3neu_A 34 EDKLPSVREM---GVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125)
T ss_dssp TCBCCCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCCCHHHH---HHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEEE
Confidence 3344 57777 8889999999999999999999999876655544
No 232
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.60 E-value=0.17 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.5
Q ss_pred CcceEEEECCCchhHHHHHHHHHHh
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...+|+++|++|+|||+|++.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3478999999999999999888653
No 233
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.57 E-value=0.23 Score=57.16 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHH
Q 004862 340 DDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLK 385 (726)
Q Consensus 340 ~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~ 385 (726)
+.=++|+..+|... .-.|+.||||||||+.+-
T Consensus 192 ~~Q~~AV~~al~~~--------------~~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--------------ELAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHHHHHHCS--------------SEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCC--------------CceEEECCCCCCHHHHHH
Confidence 33467777777543 357999999999997553
No 234
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.55 E-value=0.18 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
++|+++|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 78999999999999999998654
No 235
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.54 E-value=0.52 Score=46.63 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=20.2
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
+++++||+|+|||.++..++....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC
Confidence 599999999999999987766553
No 236
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=89.51 E-value=0.41 Score=40.16 Aligned_cols=42 Identities=7% Similarity=0.222 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEEec
Q 004862 681 ISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVILRK 725 (726)
Q Consensus 681 ~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~~~ 725 (726)
++..+| |...|+++..+...++.|.++|+|.....|-.+|.+
T Consensus 21 ~~~t~L---a~~~~ls~~~~~~~l~~L~~~GLI~~~~~~~~LT~k 62 (95)
T 1r7j_A 21 SPKTRI---MYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKK 62 (95)
T ss_dssp BCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHH
T ss_pred CCHHHH---HHHhCcCHHHHHHHHHHHHHCCCeEEECCeeEEChh
Confidence 788888 778899999999999999999999998777677654
No 237
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.50 E-value=0.17 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
++|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988653
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.49 E-value=0.16 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
--++|+||||+|||+|++.++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999998873
No 239
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.45 E-value=0.12 Score=50.99 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=16.0
Q ss_pred ceEEEECCCchhHHHHHHHHH-HhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVE-KTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~-~~~~~ 393 (726)
.-+.|+||+|+|||++++.++ ...+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 568899999999999999999 87754
No 240
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.42 E-value=0.2 Score=50.08 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
..|.|.|+||+|||++++.++..++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56999999999999999999987654
No 241
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.41 E-value=0.18 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.0
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+++|+||+|||+|++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 6899999999999999998864
No 242
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.41 E-value=0.18 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.+.|+|++|+|||++++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999998765
No 243
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=89.40 E-value=0.81 Score=38.85 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEec---CCeEEE
Q 004862 668 ETQIKRRIPIGNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKR---ERRVIL 723 (726)
Q Consensus 668 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~---~g~~~~ 723 (726)
.+.|...+..+..+ +..+| ++++|+|+.+++++|+.|.+.|+|.... .|..++
T Consensus 30 ~~~I~~~l~~g~~lps~~eL---a~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKI---ADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred HHHHHhhhcCCCcCCCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 33333444444444 78877 8889999999999999999999998765 344444
No 244
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.39 E-value=0.18 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+|+++|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 78999999999999999988753
No 245
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.39 E-value=0.2 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.++++|++|+|||+|++.++...+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 57999999999999999999988764
No 246
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.36 E-value=0.2 Score=48.48 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=20.1
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.-++|+|+||+|||+|+..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999886
No 247
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.35 E-value=0.21 Score=48.40 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..++|+|+||+|||++++.++..++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999988664
No 248
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.34 E-value=0.19 Score=46.20 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.1
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.++|+++|++|+|||+|++.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 378999999999999999988753
No 249
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.33 E-value=0.17 Score=47.64 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.1
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...|+++|++|+|||+|++.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999988753
No 250
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.33 E-value=0.17 Score=46.00 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999988753
No 251
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.30 E-value=0.17 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56889999999999999999876643
No 252
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.28 E-value=0.21 Score=47.18 Aligned_cols=25 Identities=12% Similarity=0.428 Sum_probs=21.8
Q ss_pred cceEEEECCCchhHHHHHHHHHHhC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
...|+++|++|+|||+|+..+....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3789999999999999999987643
No 253
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.22 E-value=0.19 Score=46.51 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.1
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..+|+++|++|+|||+|++.+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 378999999999999999988653
No 254
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.22 E-value=0.16 Score=49.73 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46889999999999999999876543
No 255
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.22 E-value=0.17 Score=50.48 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999987764
No 256
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.21 E-value=0.19 Score=45.89 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.3
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+++|++|+|||+|++.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999875
No 257
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.19 E-value=0.2 Score=45.80 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
++|+++|++|+|||+|++.+...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999988653
No 258
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.18 E-value=0.18 Score=47.53 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=19.9
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+|+|+||+|||+|++.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998865
No 259
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.17 E-value=0.17 Score=48.36 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=22.2
Q ss_pred CccccCcceEEEECCCchhHHHHHHHHHHh
Q 004862 361 GVKLRGDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 361 g~~~r~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
|........|+++|++|+|||+|++.+...
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 344455689999999999999999998753
No 260
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.11 E-value=0.17 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|.|+|+||+|||+|++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998754
No 261
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.07 E-value=0.18 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
++|+++|++|+|||+|++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 6899999999999999998875
No 262
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.06 E-value=0.2 Score=49.81 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=22.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-+-|.|++|+|||++++.++...+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5689999999999999999988653
No 263
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.06 E-value=0.2 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|+++|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998754
No 264
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.05 E-value=0.23 Score=46.04 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.1
Q ss_pred CcceEEEECCCchhHHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
....|+++|++|+|||+|++.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999998865
No 265
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.02 E-value=0.17 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5789999999999999999987654
No 266
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.01 E-value=0.17 Score=51.05 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999999999999999987654
No 267
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.00 E-value=0.18 Score=46.13 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.1
Q ss_pred ceEEEECCCchhHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~ 388 (726)
+.|+++|+||+|||+|++.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999998874
No 268
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.00 E-value=0.49 Score=47.14 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.3
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..+.|+|+|.||+|||+|+.++....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 45899999999999999999986543
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.98 E-value=0.14 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999887653
No 270
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.95 E-value=0.19 Score=47.48 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=22.6
Q ss_pred cccCcceEEEECCCchhHHHHHHHHHH
Q 004862 363 KLRGDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 363 ~~r~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..+..+.|+++|++|+|||+|++.+..
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHc
Confidence 345568999999999999999998875
No 271
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.84 E-value=0.2 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.0
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..+.|+|+||+|||+|++.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999875
No 272
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.83 E-value=0.22 Score=46.21 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=20.7
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+.|+++|++|+|||+|++.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 37899999999999999998864
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.83 E-value=0.18 Score=49.84 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 56899999999999999999887654
No 274
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.79 E-value=0.21 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.7
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...|+++|++|+|||+|++.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 37899999999999999998865
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.76 E-value=0.18 Score=50.51 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999999999999999987654
No 276
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.75 E-value=0.21 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.9
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.++|+++|++|+|||+|++.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 37899999999999999999875
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.74 E-value=0.22 Score=47.88 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-++|+||||+|||+||..+++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5699999999999999999987665
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.71 E-value=0.29 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.7
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|.|+|++|+|||++++.++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999988
No 279
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=88.70 E-value=1.1 Score=39.89 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=40.2
Q ss_pred HHHHHHHHHHh-----cCCCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEE
Q 004862 664 IKQAETQIKRR-----IPIGNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVI 722 (726)
Q Consensus 664 ~~~~~~~~~~~-----~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~ 722 (726)
..++++.|++. +.-+..+ +..+| ++.+|+|+.++++++..|...|+|....+....
T Consensus 16 Y~QI~~~i~~~I~~G~l~pG~~LPser~L---a~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~ 77 (134)
T 4ham_A 16 YEQIVQKIKEQVVKGVLQEGEKILSIREF---ASRIGVNPNTVSKAYQELERQEVIITVKGKGTF 77 (134)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccHHHH---HHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEE
Confidence 34455555543 3334444 67777 888999999999999999999999876554443
No 280
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.68 E-value=0.18 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999999999999999987654
No 281
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.65 E-value=0.18 Score=51.29 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 56899999999999999999876543
No 282
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.60 E-value=0.2 Score=47.56 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..+.|+|++|+|||+|++.+.....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 6799999999999999999987543
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.58 E-value=0.2 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 56889999999999999999876643
No 284
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.54 E-value=0.24 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.1
Q ss_pred cCcceEEEECCCchhHHHHHHHHHH
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...+.|+++|++|+|||+|++.+..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3458999999999999999976654
No 285
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.53 E-value=0.2 Score=50.90 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999999999999999987654
No 286
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.49 E-value=0.23 Score=47.61 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=22.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
.|.|+|.+|+|||++++.++..+...+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~v 40 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHV 40 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 488999999999999999998744433
No 287
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.48 E-value=0.3 Score=51.57 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.-++|+||||+|||+|++.++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999998776
No 288
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.48 E-value=0.23 Score=45.95 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..+|+++|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 378999999999999999998753
No 289
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.43 E-value=0.21 Score=50.28 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
--+.|+||+|+|||+|++.++.+.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5688999999999999999987654
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.42 E-value=0.18 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5688999999999999999986653
No 291
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.40 E-value=0.24 Score=47.19 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.6
Q ss_pred CcceEEEECCCchhHHHHHHHHHHh
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
....|+++|++|+|||+|+..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3478999999999999999988653
No 292
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.39 E-value=0.24 Score=46.96 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.4
Q ss_pred CcceEEEECCCchhHHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...+|+++|++|+|||+|++++..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 347999999999999999999875
No 293
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.36 E-value=0.23 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|+++|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 78999999999999999988753
No 294
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.31 E-value=0.27 Score=51.77 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCC
Confidence 56889999999999999999988764
No 295
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.29 E-value=0.21 Score=50.54 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 56889999999999999999877653
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.28 E-value=0.2 Score=51.12 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 56889999999999999999877643
No 297
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.27 E-value=0.22 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.8
Q ss_pred cceEEEECCCchhHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~ 388 (726)
.+.|+++|++|+|||+|++.+.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3789999999999999998875
No 298
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.26 E-value=0.24 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=20.9
Q ss_pred cCcceEEEECCCchhHHHHHHHHHH
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
+..+.|+++|++|+|||+|+.++..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4458999999999999999998864
No 299
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.19 E-value=0.24 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.0
Q ss_pred CcceEEEECCCchhHHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...+|+++|++|+|||+|++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 348999999999999999988764
No 300
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=88.17 E-value=0.3 Score=40.21 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEec
Q 004862 665 KQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
.+|++.|++. +.++.++| ++.+|+|+.++++.|+.|.++|.|.+.+
T Consensus 5 ~~Il~~L~~~----g~vsv~eL---A~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQ----GRMEAKQL---SARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHS----CSEEHHHH---HHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHc----CCCcHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4556666543 46777877 8889999999999999999999998874
No 301
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.17 E-value=0.15 Score=49.34 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=21.1
Q ss_pred eEEEECCCchhHHHHHHHHHHhCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-|.|+|++|+|||++++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987764
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.16 E-value=0.21 Score=50.23 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56889999999999999999887654
No 303
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.13 E-value=0.25 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.2
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+.|+++|++|+|||+|++.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 378999999999999999988753
No 304
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.12 E-value=0.32 Score=47.16 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..+.|+|++|+|||++++.++..++..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~ 32 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYV 32 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 46899999999999999999987765544
No 305
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.07 E-value=0.24 Score=46.29 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|+++|++|+|||+|++.+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 78999999999999999998753
No 306
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.99 E-value=0.22 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 5789999999999999999987653
No 307
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.97 E-value=0.26 Score=46.45 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.2
Q ss_pred CcceEEEECCCchhHHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
....|+++|++|+|||+|++.+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 347999999999999999998864
No 308
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.90 E-value=0.23 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 46889999999999999999988764
No 309
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.89 E-value=0.29 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.3
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+|+|++|+|||+|++.+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999875
No 310
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.87 E-value=0.26 Score=45.97 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..+|+++|++|+|||+|++.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 37899999999999999998874
No 311
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.87 E-value=0.26 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...|+++|++|+|||+|++.+..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 37899999999999999988864
No 312
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.86 E-value=0.26 Score=45.69 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.6
Q ss_pred CcceEEEECCCchhHHHHHHHHHHh
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...+|+++|++|+|||+|++.+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3478999999999999999988653
No 313
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.86 E-value=0.31 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.-+.|.|+.|+|||++++.++..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999999876
No 314
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.79 E-value=0.29 Score=51.98 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
..+.|+|++|+|||+|++.++.+.+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 568999999999999999999887543
No 315
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.75 E-value=0.25 Score=45.78 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|+++|++|+|||+|++.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 78999999999999999988754
No 316
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.73 E-value=0.26 Score=46.29 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=21.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.+.|+|++|+|||+|++.+......
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999887643
No 317
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.72 E-value=0.45 Score=49.04 Aligned_cols=28 Identities=18% Similarity=0.422 Sum_probs=23.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
-++|+||+|+|||+|+..+++..+..+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 4788999999999999999998875443
No 318
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.66 E-value=0.29 Score=51.66 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 46889999999999999999987754
No 319
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.60 E-value=0.27 Score=46.23 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.5
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+++|++|+|||+|++.+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 7999999999999999998874
No 320
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.59 E-value=0.26 Score=45.61 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+++|++|+|||+|++.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 7899999999999999998864
No 321
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.57 E-value=0.25 Score=46.70 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred CcceEEEECCCchhHHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
+...|+++|++|+|||+|+..+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999998864
No 322
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=87.54 E-value=0.75 Score=44.00 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.5
Q ss_pred eEEEECCCchhHH-HHHHHHHHh
Q 004862 369 NVLLLGDPSTAKS-QFLKFVEKT 390 (726)
Q Consensus 369 ~vLL~G~pGtGKt-~la~~i~~~ 390 (726)
=.+++|+.|+||| .|++++.+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~ 44 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRF 44 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 4688999999999 888988654
No 323
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.53 E-value=0.46 Score=53.76 Aligned_cols=45 Identities=13% Similarity=-0.048 Sum_probs=33.9
Q ss_pred CCccCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHH
Q 004862 334 PSIFGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 334 p~I~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~ 388 (726)
+.++|.+.....|.-.|.... .+..-|+|+|++|+|||+||+.++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHH
Confidence 458899888888877775431 011468999999999999998874
No 324
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.50 E-value=0.31 Score=46.27 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.3
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 378999999999999999988753
No 325
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.48 E-value=0.19 Score=46.87 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.5
Q ss_pred cceEEEECCCchhHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~ 388 (726)
...|+++|++|+|||+|+..+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3899999999999999987764
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.45 E-value=0.27 Score=51.99 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 56889999999999999999988754
No 327
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.45 E-value=0.28 Score=51.30 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.7
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
-|+|+||+|+|||+|++.++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~i 35 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEI 35 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCce
Confidence 589999999999999999999887433
No 328
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=87.44 E-value=0.41 Score=53.79 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=33.4
Q ss_pred cCchhHHHHHHHHHhCCCcccCCCCccccCcceEEEECCCchhHHHHHHHHHH
Q 004862 337 FGHDDVKKAVSCLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 337 ~G~~~~k~aill~L~~~~~~~~~~g~~~r~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
+|.+..+..|.-.|..+.. .+...|.|+|.+|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 6999988888776643310 0114688999999999999999985
No 329
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.42 E-value=0.29 Score=45.63 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
+.|+++|++|+|||+|++.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 7899999999999999988864
No 330
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.41 E-value=0.35 Score=49.91 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.3
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAV 395 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~ 395 (726)
-++|+||+|+|||+|+..+++..+..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~i 31 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEV 31 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccce
Confidence 578999999999999999998876543
No 331
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.39 E-value=0.75 Score=44.03 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCeEEecccC------cCCHHHHHHHHHHHhcceEeeeccceEEEeeCceEEEEecCCCCCcCCCccchhhhccCchhhh
Q 004862 432 GGVVCIDEFD------KMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKSAQDNIDLQTTIL 505 (726)
Q Consensus 432 ~gvl~iDEi~------~~~~~~~~~L~~~me~~~i~i~~~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~~~~l~~~Ll 505 (726)
-.+++|||+. .++.+ .+++++.++ |.+..||.|.|- -++.|+
T Consensus 121 yDlvILDEi~~al~~g~l~~~---ev~~~l~~R-------------p~~~~vIlTGr~----------------ap~~l~ 168 (196)
T 1g5t_A 121 LDMVVLDELTYMVAYDYLPLE---EVISALNAR-------------PGHQTVIITGRG----------------CHRDIL 168 (196)
T ss_dssp CSEEEEETHHHHHHTTSSCHH---HHHHHHHTS-------------CTTCEEEEECSS----------------CCHHHH
T ss_pred CCEEEEeCCCccccCCCCCHH---HHHHHHHhC-------------cCCCEEEEECCC----------------CcHHHH
Confidence 4699999994 34544 466776643 456788888883 467899
Q ss_pred cccCeeeEeccCC
Q 004862 506 SRFDLIFIVKDIR 518 (726)
Q Consensus 506 ~RFdli~~l~d~~ 518 (726)
..-|++-.+....
T Consensus 169 e~AD~VTem~~vk 181 (196)
T 1g5t_A 169 DLADTVSELRPVK 181 (196)
T ss_dssp HHCSEEEECCCSC
T ss_pred HhCcceeeeccee
Confidence 9999998876644
No 332
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.39 E-value=0.32 Score=46.78 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=21.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.-+.|+|++|+|||++++.++..+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765
No 333
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.38 E-value=0.29 Score=45.59 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.8
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...|+++|++|+|||+|++.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 37899999999999999998875
No 334
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.35 E-value=0.24 Score=46.45 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=19.7
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+|+++|++|+|||+|+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999998864
No 335
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.35 E-value=0.29 Score=46.01 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|+++|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998753
No 336
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.34 E-value=0.32 Score=50.46 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.-+.|+|++|+|||+|++.++.+.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCchHHHHHHHHHhhccc
Confidence 67899999999999999999887643
No 337
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.33 E-value=0.3 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 56889999999999999999988764
No 338
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=87.33 E-value=0.29 Score=46.66 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.2
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..+|+++|++|+|||+|++.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 478999999999999999988653
No 339
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.31 E-value=0.27 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.4
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...|+++|++|+|||+|++.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 37899999999999999988754
No 340
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.30 E-value=0.3 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 46889999999999999999988754
No 341
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=87.29 E-value=0.32 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=20.6
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...|+++|++|+|||+|++.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 37899999999999999988865
No 342
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.28 E-value=0.27 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.7
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...|+++|++|+|||+|++.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 37899999999999999998864
No 343
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=87.25 E-value=0.27 Score=46.51 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.7
Q ss_pred CcceEEEECCCchhHHHHHHHHHHh
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..+.|+++|++|+|||+|++.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3479999999999999999988753
No 344
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=87.23 E-value=0.3 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.9
Q ss_pred CcceEEEECCCchhHHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..+.|+++|++|+|||+|++.+..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHh
Confidence 347899999999999999988765
No 345
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.23 E-value=0.25 Score=48.78 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-|.|.|+||+|||++++.++..++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999988765
No 346
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.21 E-value=0.27 Score=52.38 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 45889999999999999999988764
No 347
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=87.20 E-value=0.28 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.3
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+++|+||+|||+|++.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998875
No 348
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.19 E-value=0.31 Score=51.61 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 46889999999999999999988764
No 349
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=87.18 E-value=1.6 Score=35.03 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHHHCCeEEEecCCeEE
Q 004862 660 MAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNES-IIRRALIIMHQRDEVEYKRERRVI 722 (726)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~l~~l~~~g~i~~~~~g~~~ 722 (726)
..+...+|+..|++. ++.+-.+| |+.+|++.. .++..|..|.+.|+|.....||-+
T Consensus 9 ~~~~~~~IL~~Lk~~----g~~ta~ei---A~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~ 65 (79)
T 1xmk_A 9 MAEIKEKICDYLFNV----SDSSALNL---AKNIGLTKARDINAVLIDMERQGDVYRQGTTPPI 65 (79)
T ss_dssp HHHHHHHHHHHHHHT----CCEEHHHH---HHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCE
T ss_pred chhHHHHHHHHHHHc----CCcCHHHH---HHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 344456677777764 24444555 888999999 999999999999999977666543
No 350
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=87.16 E-value=2.4 Score=36.52 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=35.7
Q ss_pred CCCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEE
Q 004862 676 PIGNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 676 ~~~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~ 723 (726)
.-+..+ +..+| ++++|+|+.++++++..|...|+|....++....
T Consensus 28 ~~G~~lPs~~~L---a~~~~vSr~tvr~al~~L~~~Gli~~~~~~G~~V 73 (113)
T 3tqn_A 28 VEGEMIPSIRKI---STEYQINPLTVSKAYQSLLDDNVIEKRRGLGMLV 73 (113)
T ss_dssp CTTCEECCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCcCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEE
Confidence 334444 67777 8889999999999999999999998776655543
No 351
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.15 E-value=0.3 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|+++|++|+|||+|++.+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999988653
No 352
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.14 E-value=0.3 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCC
Confidence 67999999999999999999876643
No 353
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.14 E-value=0.31 Score=51.79 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC
Confidence 56889999999999999999988764
No 354
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.13 E-value=0.28 Score=48.48 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=24.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..+.|+|++|+|||++++.++..++..++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 57999999999999999999986554443
No 355
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.09 E-value=0.28 Score=46.54 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.3
Q ss_pred CcceEEEECCCchhHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~ 388 (726)
....|+++|++|+|||+|++.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 34899999999999999998874
No 356
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.05 E-value=0.33 Score=51.70 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.++++||+|+|||++++.+....+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4799999999999999999987654
No 357
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=86.97 E-value=0.32 Score=47.13 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=20.9
Q ss_pred cCcceEEEECCCchhHHHHHHHHHH
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...+.|+++|++|+|||+|++.+..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 3458999999999999999998765
No 358
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.96 E-value=0.31 Score=45.93 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.7
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.++|+++|++|+|||+|++.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 37899999999999999998875
No 359
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.92 E-value=0.33 Score=46.23 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.4
Q ss_pred CcceEEEECCCchhHHHHHHHHHHh
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
....|+++|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3479999999999999999988753
No 360
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=86.86 E-value=16 Score=40.59 Aligned_cols=59 Identities=15% Similarity=-0.058 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHcC---------------CCHHHHHHHHHHHHHCCeEEEecCCeEE
Q 004862 664 IKQAETQIKRRIPIGNQISERRLIDDLTRMG---------------MNESIIRRALIIMHQRDEVEYKRERRVI 722 (726)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~~~~~~l~~l~~~g~i~~~~~g~~~ 722 (726)
...+...+.-.....+.+..+++.......+ ++.+.....|+.|.+.++.+...++.-+
T Consensus 291 ~~~v~~ii~~~~~~~G~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lm~~f~l~~~~~~~~~l 364 (535)
T 3dpu_A 291 TIGVYRIINSSKTKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFI 364 (535)
T ss_dssp HHHHHHHHHCTTSTTSEEEGGGHHHHHHTC-------------CCCCCHHHHHHHHHHHHHTTSCEECSSSEEE
T ss_pred HHHHHHHhCCcCCCCcEEcHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHHHcCeEEEcCCCcEE
Confidence 3334444442222334556666655554432 7788888899999999999887766544
No 361
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.85 E-value=0.29 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..+.|+|+||+|||+|++.+....
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 679999999999999999998664
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.84 E-value=0.32 Score=50.35 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=22.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-+.|+|++|+|||+|++.++.+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 363
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.78 E-value=0.29 Score=45.59 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.5
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..+|+++|++|+|||+|++.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 37899999999999999988874
No 364
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.76 E-value=0.33 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=18.4
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
--++|.|+||+|||+|+..++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999776643
No 365
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=86.76 E-value=0.64 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.8
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..+|+|+|+||+|||+|+..+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999864
No 366
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.75 E-value=0.36 Score=45.34 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.5
Q ss_pred CcceEEEECCCchhHHHHHHHHHHh
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
....|+++|++|+|||+|++.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999988654
No 367
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.74 E-value=0.33 Score=49.67 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=20.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
--++|+|+||+|||+|++.++...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987654
No 368
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=86.74 E-value=0.3 Score=46.48 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+|+++|++|+|||+|++.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 7899999999999999998864
No 369
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.72 E-value=0.33 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.1
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+.|+++|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 378999999999999999988653
No 370
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=86.70 E-value=0.31 Score=46.13 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+.|+++|++|+|||+|++.+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 378999999999999999988753
No 371
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.67 E-value=0.34 Score=47.82 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.0
Q ss_pred ceEEEECCCchhHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~ 388 (726)
.-+++.|+||+|||+|+-.++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999987654
No 372
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.62 E-value=0.52 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..+.|+|++|+|||+|++.+..+.+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5799999999999999999998654
No 373
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=86.61 E-value=0.34 Score=45.72 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.1
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...|+++|++|+|||+|++.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999988753
No 374
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=86.58 E-value=1.3 Score=32.75 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEE
Q 004862 666 QAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEY 715 (726)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~ 715 (726)
++++-|+.. ++.+..+.. ++.+|++++++...|+.|.++|+|.-
T Consensus 14 ~lL~yIr~s---GGildI~~~---a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 14 ELLDYIVNN---GGFLDIEHF---SKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHT---TSEEEHHHH---HHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHc---CCEEeHHHH---HHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 455656643 444555555 88899999999999999999999964
No 375
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.57 E-value=0.28 Score=49.82 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=20.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
--++|+|+||+|||+|+..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999988754
No 376
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=86.52 E-value=2.1 Score=37.77 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEE
Q 004862 678 GNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 678 ~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~ 723 (726)
+..+ +..+| ++++|+|+.++++++..|...|+|....++...+
T Consensus 32 G~~lPse~~L---a~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V 75 (126)
T 3by6_A 32 NDQLPSVRET---ALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFI 75 (126)
T ss_dssp TCEECCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCcCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEE
Confidence 4445 77777 8889999999999999999999998776655443
No 377
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=86.52 E-value=0.34 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=20.7
Q ss_pred cCcceEEEECCCchhHHHHHHHHHH
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...+.|+++|++|+|||+|++.+..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999988764
No 378
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.46 E-value=0.28 Score=53.03 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=22.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.++++||+|+|||++++++....+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3689999999999999999987764
No 379
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=86.40 E-value=0.35 Score=46.55 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.8
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...|+++|++|+|||+|+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999988754
No 380
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=86.34 E-value=0.32 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...|+++|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999988653
No 381
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.33 E-value=0.33 Score=45.87 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.7
Q ss_pred cceEEEECCCchhHHHHHHHHHHhC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.+.|+++|++|+|||+|++.+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3789999999999999999887643
No 382
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.30 E-value=0.34 Score=49.05 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=21.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
--+.|+||+|+|||+|++.++.+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999876
No 383
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=86.27 E-value=0.36 Score=45.85 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.9
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+|+|+||+|||+|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999988764
No 384
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.23 E-value=0.28 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.-|+|+|+||+|||++++.+++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 458899999999999999987654
No 385
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.18 E-value=0.32 Score=48.69 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=21.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
-.+.|+||+|+|||+|++.++.+
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999975
No 386
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.10 E-value=0.39 Score=51.60 Aligned_cols=21 Identities=29% Similarity=0.263 Sum_probs=18.5
Q ss_pred ceEEEECCCchhHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~ 388 (726)
--++|+||||+|||+|++.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 469999999999999999654
No 387
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=85.98 E-value=2.3 Score=42.29 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEE
Q 004862 665 KQAETQIKRRIPIGNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 665 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~ 723 (726)
..+.+.|.+ +..+..+ +..+| ++++|+|+.+++++|..|.+.|+|.. ++.....
T Consensus 21 ~~l~~~I~~-~~~g~~lPse~~L---a~~~~vSr~tvr~Al~~L~~~G~i~~-~g~Gt~V 75 (248)
T 3f8m_A 21 AELDRMLDG-MRIGDPFPAEREI---AEQFEVARETVRQALRELLIDGRVER-RGRTTVV 75 (248)
T ss_dssp HHHHHHHHH-CCTTCBCCCHHHH---HHHTTCCHHHHHHHHHHHHHTTSEEE-ETTEEEE
T ss_pred HHHHHHHhC-CCCCCcCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEe-CCCEEEE
Confidence 344444554 5445555 77777 88999999999999999999999999 6555543
No 388
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=85.95 E-value=0.33 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.5
Q ss_pred CcceEEEECCCchhHHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
....|+++|++|+|||+|++++..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 447899999999999999997754
No 389
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.93 E-value=0.32 Score=51.34 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=25.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC----CCcEEeCCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA----PIAVYTSGKG 401 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~----~~~~~~~g~~ 401 (726)
.-++|+||||+|||+|+..++... .+..|.++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 568999999999999999886653 2335655443
No 390
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=85.92 E-value=0.35 Score=45.79 Aligned_cols=22 Identities=14% Similarity=0.449 Sum_probs=19.8
Q ss_pred cceEEEECCCchhHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~ 388 (726)
.+.|+++|++|+|||+|++.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3789999999999999998875
No 391
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.89 E-value=0.36 Score=49.87 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+|++|+|||++++.++....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999987654
No 392
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=85.85 E-value=0.3 Score=45.69 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=21.4
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHh
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.....|+++|++|+|||+|++.+...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 34479999999999999999998753
No 393
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=85.83 E-value=0.23 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.2
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...+.|+|++|+|||+|++.+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999988754
No 394
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=85.73 E-value=3.5 Score=36.74 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCC
Q 004862 657 TAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRER 719 (726)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g 719 (726)
+......+..++..+... .+++..+| ++.+|+++.++.+.|+.|.+.|+|...+.+
T Consensus 3 s~~~~~~L~~i~~l~~~~----~~~~~~el---a~~l~vs~~tvs~~l~~Le~~Glv~r~~~~ 58 (142)
T 1on2_A 3 TPSMEMYIEQIYMLIEEK----GYARVSDI---AEALAVHPSSVTKMVQKLDKDEYLIYEKYR 58 (142)
T ss_dssp CHHHHHHHHHHHHHHHHH----SSCCHHHH---HHHHTSCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred ChHHHHHHHHHHHHHhhc----CCCCHHHH---HHHhCCCHHHHHHHHHHHHHCCCEEEeeCc
Confidence 345556666666655432 35777777 778899999999999999999999877544
No 395
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.69 E-value=0.31 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.9
Q ss_pred CcceEEEECCCchhHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~ 388 (726)
....|+++|+||+|||+|++.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999998764
No 396
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.67 E-value=0.3 Score=50.08 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||.|+|||+|++.++.+.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56899999999999999999988764
No 397
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=85.64 E-value=0.25 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=10.5
Q ss_pred ceEEEECCCchhHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~ 388 (726)
..|+++|++|+|||+|++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEECCCCC----------
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999998765
No 398
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.62 E-value=1.1 Score=46.18 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=22.8
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhCC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..--+.|+|++|+|||++++.++....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 335789999999999999999987653
No 399
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=85.60 E-value=3.2 Score=36.68 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=34.9
Q ss_pred CCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEE
Q 004862 678 GNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 678 ~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~ 723 (726)
+..+ +..+| ++.+|+|+.++++++..|...|+|....++...+
T Consensus 25 G~~LPse~~L---a~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G~~V 68 (129)
T 2ek5_A 25 DQRVPSTNEL---AAFHRINPATARNGLTLLVEAGILYKKRGIGMFV 68 (129)
T ss_dssp TSCBCCHHHH---HHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEEE
T ss_pred CCcCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCcEEEecCCEEEE
Confidence 4445 67777 8899999999999999999999998776655443
No 400
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.60 E-value=0.37 Score=46.25 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=20.6
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...|+++|++|+|||+|++.+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 37899999999999999998765
No 401
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.49 E-value=0.35 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=22.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
-.+.|+||+|+|||+|++.++.+.|
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~p 55 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLLP 55 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999988763
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.48 E-value=0.41 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|.|+|+||+|||++++.++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999853
No 403
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=85.46 E-value=0.38 Score=46.32 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.2
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999988753
No 404
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=85.39 E-value=1.4 Score=39.28 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEec
Q 004862 678 GNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 678 ~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
+..++..+| ++.+|+++.++.+.|+.|.+.|+|...+
T Consensus 29 ~~~~s~~el---a~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 29 GEGAKINRI---AKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TSCBCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCcCHHHH---HHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 456788887 7788999999999999999999998776
No 405
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=85.38 E-value=0.29 Score=46.09 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.6
Q ss_pred cceEEEECCCchhHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~ 388 (726)
..+|+++|++|+|||+|+..+.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3899999999999999998863
No 406
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.28 E-value=0.32 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.2
Q ss_pred CcceEEEECCCchhHHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
....|+++|++|+|||+|++.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999988643
No 407
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=85.20 E-value=0.38 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.5
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+.|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 47899999999999999998863
No 408
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=85.19 E-value=0.42 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+.|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 47899999999999999998864
No 409
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=85.18 E-value=1.9 Score=34.59 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEe
Q 004862 666 QAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYK 716 (726)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~ 716 (726)
.|++.+.+. ..++..+| ++..|+++.++.+.|+.|.+.|+|...
T Consensus 4 ~Il~~L~~~----~~~s~~eL---a~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH----NGGKTAEI---AEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS----CCCCHHHH---HHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc----CCCCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 355555532 35777877 777899999999999999999999854
No 410
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.08 E-value=0.46 Score=44.55 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.-+||.|++|+|||++|..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 67999999999999999888763
No 411
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.04 E-value=0.41 Score=49.48 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=24.1
Q ss_pred cCcceEEEECCCchhHHHHHHHHH-Hh-----CCCcEEeCCCCC
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVE-KT-----APIAVYTSGKGS 402 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~-~~-----~~~~~~~~g~~~ 402 (726)
+| + +++.||||+|||+|+-.++ .. -.+..|.++..+
T Consensus 28 ~G-i-teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 28 SG-L-LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp SE-E-EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CC-e-EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 55 5 8999999999999975443 22 223566655443
No 412
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=84.95 E-value=0.51 Score=48.39 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=22.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.-|.|+|++|+|||++++.++..++.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999887653
No 413
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.93 E-value=0.42 Score=45.07 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..+|+++|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999988754
No 414
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=84.89 E-value=2.4 Score=33.54 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEec
Q 004862 664 IKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
...+..+|.. ++.+......+| |+++|+++..+.+.|-.|.+.|+|....
T Consensus 14 ~~~v~~~i~~-L~~~~~~Ta~~I---AkkLg~sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 14 FSLVKKEVLS-LNTNDYTTAISL---SNRLKINKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HHHHHHHHHT-SCTTCEECHHHH---HHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHh-CCCCcchHHHHH---HHHHCCCHHHHHHHHHHHHHCCCEecCC
Confidence 4445555553 333434445555 9999999999999999999999998663
No 415
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=84.85 E-value=1.5 Score=41.76 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=17.7
Q ss_pred CCeEEecccCcCCHHHHHHHHHHH
Q 004862 432 GGVVCIDEFDKMRPEDRVAIHEAM 455 (726)
Q Consensus 432 ~gvl~iDEi~~~~~~~~~~L~~~m 455 (726)
-.+++|||+.-++++..+.|..+.
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~ 105 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIA 105 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999877655554433
No 416
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=84.84 E-value=0.42 Score=45.15 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.5
Q ss_pred CcceEEEECCCchhHHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
....|+++|++|+|||+|++.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999988753
No 417
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.78 E-value=0.45 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.5
Q ss_pred eEEEECCCchhHHHHHHHHHHhC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
-.+|+||.|+|||+++.++.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35889999999999999997543
No 418
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=84.71 E-value=0.44 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.6
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+.|+++|++|+|||+|++.+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 37999999999999999988764
No 419
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.63 E-value=0.37 Score=46.02 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.2
Q ss_pred ceEEEECCCchhHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~ 388 (726)
..|+++|++|+|||+|++.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 679999999999999998874
No 420
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.61 E-value=0.33 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.8
Q ss_pred eEEEECCCchhHHHHHHHHHHhC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
++.|+|++|+|||+|++.++...
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 59999999999999999998763
No 421
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=84.61 E-value=1.3 Score=35.89 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecC
Q 004862 664 IKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRE 718 (726)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~ 718 (726)
..+|++.|++ . +++..+| |+++|+++.++.+.|..|.+.|+|.....
T Consensus 19 ~~~IL~lL~~----~-g~sa~eL---Ak~LgiSk~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 19 VCEAIKTIGI----E-GATAAQL---TRQLNMEKREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHSS----S-TEEHHHH---HHHSSSCHHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHH----c-CCCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEeCCC
Confidence 4455655552 1 2667776 99999999999999999999999987643
No 422
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=84.61 E-value=0.44 Score=45.49 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.9
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...|+++|++|+|||+|++.+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 378999999999999999988653
No 423
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=84.60 E-value=0.5 Score=49.96 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
--+.|+||+|+|||+|++.++.+.+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 56889999999999999999987654
No 424
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.56 E-value=0.43 Score=45.76 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+++|++|+|||+|+..+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 6899999999999999998875
No 425
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=84.54 E-value=0.43 Score=46.13 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.6
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+.|+++|++|+|||+|++.+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 37899999999999999998864
No 426
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=84.44 E-value=1.3 Score=42.31 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEEe
Q 004862 679 NQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVILR 724 (726)
Q Consensus 679 ~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~~ 724 (726)
.+++..+| |+.+|+++..+..++++|.++|+|...++|=.+|.
T Consensus 29 ~~V~~~~L---A~~LgvS~~SV~~~lkkL~e~GLV~~~~~Gv~LTe 71 (200)
T 2p8t_A 29 EPLGRKQI---SERLELGEGSVRTLLRKLSHLDIIRSKQRGHFLTL 71 (200)
T ss_dssp SCBCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEC--CEEECH
T ss_pred CCccHHHH---HHHhCCCHHHHHHHHHHHHHCCCEEEeCCCeEECH
Confidence 46888888 88889999999999999999999998776656654
No 427
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.42 E-value=1.4 Score=45.42 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=21.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
--++++|++|+|||+++..++...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Confidence 468999999999999999988654
No 428
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=84.40 E-value=0.45 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred cceEEEECCCchhHHHHHHHHHHh
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
...|+++|++|+|||+|++.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999988753
No 429
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=84.39 E-value=0.37 Score=49.67 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=20.1
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|.|+|++|+|||+|++.+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6789999999999999999764
No 430
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.36 E-value=0.53 Score=52.80 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..+.|+|++|+|||+|++.++..+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 6799999999999999999998764
No 431
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=84.31 E-value=0.42 Score=48.31 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+|.|+|+||+|||+|+.++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998754
No 432
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=84.25 E-value=0.51 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred CcceEEEECCCchhHHHHHHHHH
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~ 388 (726)
....|+|+|+||+|||+|+..+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999998876
No 433
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.22 E-value=0.48 Score=49.47 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=21.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-+.|+||+|+|||++++.++....
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999987643
No 434
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=84.21 E-value=0.46 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.6
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+.|+++|++|+|||+|++.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 37899999999999999988764
No 435
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=84.18 E-value=1.5 Score=41.88 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEec
Q 004862 656 LTAEMAHEIKQAETQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKR 717 (726)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 717 (726)
++..+.+.+..|.+.+++. +.+.+..+| ++.+|++..++.+.|+.|.++|+|....
T Consensus 3 lt~~q~~il~~I~~~~~~~---g~~~s~~ei---a~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKN---GYPPSVREI---ARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHH---SSCCCHHHH---HHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred cCHHHHHHHHHHHHHHHHh---CCCCCHHHH---HHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 4455566666666655543 345777887 8888999999999999999999998653
No 436
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.15 E-value=0.4 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
--+.|+||+|+|||+|++.++.+.+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 5789999999999999999998765
No 437
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.07 E-value=0.54 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.3
Q ss_pred cCcceEEEECCCchhHHHHHHHHHHh
Q 004862 365 RGDVNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 365 r~~~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
+.+.|++++|++|+|||++++.+...
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHH
Confidence 35579999999999999999988653
No 438
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=83.99 E-value=0.53 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
+.|+++|++|+|||+|++.+...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 78999999999999999988753
No 439
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=83.97 E-value=0.45 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.3
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+|+|+||+|||+|+.++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 6899999999999999999865
No 440
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.90 E-value=0.43 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..|.|+|++|+|||+|++.+....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 578999999999999999998654
No 441
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=83.84 E-value=1.4 Score=40.18 Aligned_cols=59 Identities=29% Similarity=0.250 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHCCeEEEecC-CeEEEe
Q 004862 662 HEIKQAETQIKRRIPIGNQISERRLIDDLTRMG--------------MNESIIRRALIIMHQRDEVEYKRE-RRVILR 724 (726)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~~~~~~l~~l~~~g~i~~~~~-g~~~~~ 724 (726)
....++.+.|++.+-.+ ..+..+| ++.+| .|...++++|..|...|+|....+ |+.++.
T Consensus 50 ~~y~ria~~lr~~i~~g-~~G~~~L---a~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~ 123 (150)
T 2v7f_A 50 WWYYRVASILRRVYLDG-PVGIERL---RTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITP 123 (150)
T ss_dssp HHHHHHHHHHHHHHHHC-SBCHHHH---HHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHH---HHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCCCceEECC
Confidence 34556667776654333 4555555 77899 999999999999999999997644 666543
No 442
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=83.71 E-value=0.96 Score=51.65 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=17.0
Q ss_pred eEEEECCCchhHHHHHHHHH
Q 004862 369 NVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~ 388 (726)
..++.||||||||+++..+.
T Consensus 197 ~~li~GppGTGKT~~~~~~i 216 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIV 216 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHH
Confidence 68999999999999876653
No 443
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=83.68 E-value=3.2 Score=40.84 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEE
Q 004862 678 GNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 678 ~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~ 723 (726)
+..+ +..+| ++++|+|+.+++++|..|.+.|+|...++.....
T Consensus 30 g~~lPse~~L---a~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 73 (236)
T 3edp_A 30 GMLMPNETAL---QEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYV 73 (236)
T ss_dssp CC--CCHHHH---HHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred cCCCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEECCceEEE
Confidence 4445 67777 8899999999999999999999999876665544
No 444
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=83.56 E-value=0.54 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=20.3
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...|+++|++|+|||+|+..+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999988754
No 445
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=83.48 E-value=0.54 Score=45.47 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.4
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
...|+++|++|+|||+|+..+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 47899999999999999988754
No 446
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.40 E-value=2.4 Score=41.16 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=21.2
Q ss_pred CCCeEEecccCcCCHHHHHHHHHHHhcc
Q 004862 431 DGGVVCIDEFDKMRPEDRVAIHEAMEQQ 458 (726)
Q Consensus 431 ~~gvl~iDEi~~~~~~~~~~L~~~me~~ 458 (726)
+--+++|||..-++++.-..|.++.+.+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHCC
Confidence 3459999999999987767776665433
No 447
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=83.38 E-value=1.5 Score=46.26 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=22.5
Q ss_pred cceEEEECCCchhHHHHHHHHHHhCC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-.++|+|++|+|||++++.++....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 35799999999999999999987653
No 448
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=83.23 E-value=1.8 Score=35.82 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCe
Q 004862 678 GNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERR 720 (726)
Q Consensus 678 ~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~ 720 (726)
+.+++..+| ++.+|+++.++.+.|+.|.+.|+|...+.|+
T Consensus 36 ~~~~s~~el---a~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 36 SPGTSAGEL---TRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp CCSEEHHHH---HHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 346777777 7777999999999999999999999776655
No 449
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.14 E-value=0.73 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.-++|+|+||+|||+|+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999988764
No 450
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.04 E-value=0.65 Score=43.89 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=19.0
Q ss_pred EEEECCCchhHHHHHHHHHHh
Q 004862 370 VLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 370 vLL~G~pGtGKt~la~~i~~~ 390 (726)
+|++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 799999999999999988754
No 451
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.00 E-value=0.62 Score=43.78 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=20.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.-+.++|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 358899999999999999987653
No 452
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=82.95 E-value=1.3 Score=37.79 Aligned_cols=36 Identities=14% Similarity=0.486 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEe
Q 004862 678 GNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYK 716 (726)
Q Consensus 678 ~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~ 716 (726)
+..++..+| ++.+|+++.++.+.|..|.+.|+|...
T Consensus 31 g~~~s~~eL---a~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 31 GTEMTDEEI---ANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CSCBCHHHH---HHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 335777777 888999999999999999999999875
No 453
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=82.91 E-value=0.48 Score=48.78 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.-+.|+|++|+|||+|++.++.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 35789999999999999999876543
No 454
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=82.91 E-value=0.61 Score=51.32 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.0
Q ss_pred cceEEEECCCchhHHHHHHHHHHhC
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
...|+|+|.||+|||++++.++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999998754
No 455
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=82.80 E-value=0.59 Score=47.37 Aligned_cols=23 Identities=17% Similarity=0.612 Sum_probs=20.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|.|+|+||+|||+|+..+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 67999999999999999998753
No 456
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=82.75 E-value=0.52 Score=49.68 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=18.9
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.-++|+|+||+|||+|+..++.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999887754
No 457
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=82.70 E-value=0.85 Score=46.94 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-+.|+|++|+|||+|++.+. ..+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 457899999999999999999 654
No 458
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=82.63 E-value=0.51 Score=47.79 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=19.6
Q ss_pred cceEEEECCCchhHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~ 388 (726)
..+|+++|+||+|||+|+.++.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999998863
No 459
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=82.49 E-value=0.62 Score=45.41 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=19.3
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.-|+|+|++|+|||.|+.....
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 5799999999999999987654
No 460
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.45 E-value=0.68 Score=48.18 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.3
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.-++|+|+||+|||+|+..++..
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHH
Confidence 56999999999999999988754
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=82.37 E-value=0.66 Score=44.99 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..++++|++|+|||+|+..+...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999887654
No 462
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=82.36 E-value=0.56 Score=51.42 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
--+.|+|++|+|||+|+|.++.+.+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CEEEEECCCCCCHHHHHHHHhCccc
Confidence 5699999999999999999998764
No 463
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=82.35 E-value=0.33 Score=46.20 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=6.0
Q ss_pred cceEEEECCCchhHHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~~ 389 (726)
.+.|+++|++|+|||+|+..+..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEC----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 37899999999999999988754
No 464
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.33 E-value=0.81 Score=48.91 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=23.9
Q ss_pred eEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
-++|.||+|+|||+|+..++...+..+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~ii 31 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVI 31 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEe
Confidence 5789999999999999999988775443
No 465
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=82.32 E-value=0.7 Score=43.19 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.0
Q ss_pred eEEEECCCchhHHHHHHHHHHhC
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
-+.++|++|+|||+++..+...+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999887654
No 466
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=82.16 E-value=2.4 Score=41.20 Aligned_cols=104 Identities=8% Similarity=0.158 Sum_probs=64.1
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhh--hh--hhcCccccccccHHHHHHHHHHHHHHHHhcCC
Q 004862 602 ITVRQLEAIVRLSEALAKMKLSHVATENEVNEAVRLFTVSTM--DA--ARSGINQQVNLTAEMAHEIKQAETQIKRRIPI 677 (726)
Q Consensus 602 ~t~R~L~~lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (726)
++..+|-.++.. .++.+.|+++|+..|+++++.--. .. ..+|.......+.+.......+++.+..
T Consensus 96 I~L~dl~~~~nr------aRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~---- 165 (218)
T 3cuq_B 96 MSLTEVYCLVNR------ARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSE---- 165 (218)
T ss_dssp EEHHHHHHHHHH------TCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHH----
T ss_pred EEHHHHHHHHHH------HcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHH----
Confidence 555555555533 345678999999999998874211 01 1123321111111111223344454443
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecC
Q 004862 678 GNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRE 718 (726)
Q Consensus 678 ~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~ 718 (726)
.++++..++ ++.+|.+.....+.|+.+.+.|.+-....
T Consensus 166 ~g~vt~~~l---a~~l~ws~~~a~e~L~~~e~~G~l~~D~~ 203 (218)
T 3cuq_B 166 KGSLTSEEF---AKLVGMSVLLAKERLLLAEKMGHLCRDDS 203 (218)
T ss_dssp TSCBCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCCcCHHHH---HHHhCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 346777777 77789999999999999999999977643
No 467
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=82.09 E-value=0.8 Score=48.16 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=23.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
--+.|+|++|+|||+|++.++......
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 468999999999999999999987543
No 468
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=82.00 E-value=0.63 Score=47.15 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=20.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.+|.|+|.||+|||+|+.++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999998653
No 469
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=81.99 E-value=4.5 Score=39.87 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=37.1
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEEE
Q 004862 675 IPIGNQI-SERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVIL 723 (726)
Q Consensus 675 ~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~~ 723 (726)
+..+..+ +..+| ++++|+|+.+++++|..|.+.|+|....+..+.+
T Consensus 23 ~~~g~~lPse~~L---a~~~~vSr~tvr~Al~~L~~~g~i~~~~g~G~~V 69 (239)
T 3bwg_A 23 LQQGDKLPVLETL---MAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFV 69 (239)
T ss_dssp CCTTCBCCCHHHH---HHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCCCCcCHHHH---HHHHCCCHHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence 3334555 67777 8899999999999999999999999876665544
No 470
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=81.98 E-value=0.64 Score=47.99 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.8
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
..|+|+|+||+|||+|+..+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999988654
No 471
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=81.93 E-value=0.85 Score=43.89 Aligned_cols=29 Identities=10% Similarity=0.120 Sum_probs=25.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
.-|.|.|++|+|||++++.+++.+...++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 46999999999999999999998877665
No 472
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=81.91 E-value=0.89 Score=49.47 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.8
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCc
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIA 394 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~ 394 (726)
--+.|+|++|+|||+|++.++......
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 568999999999999999999987643
No 473
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=81.84 E-value=0.37 Score=47.49 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=19.7
Q ss_pred EEECCCchhHHHHHHHHHHhCCC
Q 004862 371 LLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 371 LL~G~pGtGKt~la~~i~~~~~~ 393 (726)
.|+||+|+|||+|+++++.+.+.
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhccccc
Confidence 46799999999999999887653
No 474
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=81.77 E-value=1 Score=52.99 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=17.3
Q ss_pred eEEEECCCchhHHHHHHHHHH
Q 004862 369 NVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~ 389 (726)
..++.||||||||+++..+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~ 393 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVY 393 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999998766543
No 475
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=81.76 E-value=3.1 Score=37.75 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCC
Q 004862 679 NQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRER 719 (726)
Q Consensus 679 ~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g 719 (726)
..++..+| ++.+|+++.++.+.|+.|.+.|+|.....+
T Consensus 53 ~~~~~~~l---a~~l~vs~~tvs~~l~~Le~~Glv~r~~~~ 90 (155)
T 2h09_A 53 GEARQVDM---AARLGVSQPTVAKMLKRLATMGLIEMIPWR 90 (155)
T ss_dssp SCCCHHHH---HHHHTSCHHHHHHHHHHHHHTTCEEEETTT
T ss_pred CCcCHHHH---HHHhCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 35666666 788899999999999999999999876443
No 476
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=81.75 E-value=1.9 Score=35.84 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeE
Q 004862 679 NQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRV 721 (726)
Q Consensus 679 ~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~ 721 (726)
+..+..+| ++..|+++.++.+.|+.|.+.|+|...+.|+.
T Consensus 35 ~~~~~~el---a~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~ 74 (98)
T 3jth_A 35 QELSVGEL---CAKLQLSQSALSQHLAWLRRDGLVTTRKEAQT 74 (98)
T ss_dssp SCEEHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEECCTTC
T ss_pred CCCCHHHH---HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCE
Confidence 46677777 66679999999999999999999998877764
No 477
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=81.71 E-value=7.1 Score=38.32 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=36.7
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeEE
Q 004862 675 IPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRVI 722 (726)
Q Consensus 675 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~~ 722 (726)
+..+..++..+| ++.+|+|+..++++|..|...|+|....+++..
T Consensus 44 l~pG~~L~e~~L---a~~lgVSr~~VReAL~~L~~~Glv~~~~~~G~~ 88 (237)
T 3c7j_A 44 LPSGTALRQQEL---ATLFGVSRMPVREALRQLEAQSLLRVETHKGAV 88 (237)
T ss_dssp SCTTCBCCHHHH---HHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CCCcCeeCHHHH---HHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceE
Confidence 344556787777 888999999999999999999999977555544
No 478
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=81.65 E-value=3.2 Score=35.27 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCCeE
Q 004862 680 QISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRERRV 721 (726)
Q Consensus 680 ~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g~~ 721 (726)
+.+..+| ++.+|+++.++.+.|+.|.+.|+|...+.|+.
T Consensus 38 ~~s~~eL---a~~lgis~stvs~~L~~L~~~GlV~~~~~gr~ 76 (108)
T 2kko_A 38 ERAVEAI---ATATGMNLTTASANLQALKSGGLVEARREGTR 76 (108)
T ss_dssp CEEHHHH---HHHHTCCHHHHHHHHHHHHHHTSEEEEEETTE
T ss_pred CcCHHHH---HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCE
Confidence 5667777 77789999999999999999999997766653
No 479
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=81.64 E-value=3.3 Score=33.17 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCC-CCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHCCeEEEecC
Q 004862 666 QAETQIKRRIPIG-NQISERRLIDDLTRM--GMNESIIRRALIIMHQRDEVEYKRE 718 (726)
Q Consensus 666 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g~~~~~~~~~l~~l~~~g~i~~~~~ 718 (726)
.|++.+.+. . ..++.++|.+.+.+. +++..++++.|+.|.+.|+|.+...
T Consensus 21 ~IL~~l~~~---~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 21 KILEVLQEP---DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHTSG---GGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHhC---CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEee
Confidence 345555432 2 478999998888764 8999999999999999999987654
No 480
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=81.59 E-value=0.61 Score=49.22 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
.-+.|+|+||+|||+|++.+....+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3688999999999999999986543
No 481
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=81.56 E-value=0.81 Score=50.30 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=22.1
Q ss_pred CcceEEEECCCchhHHHHHHHHHHhC
Q 004862 366 GDVNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 366 ~~~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..--++|+|++|+|||++++.++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 33578999999999999999998754
No 482
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=81.28 E-value=0.51 Score=48.76 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=19.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
..+.|+|+||+|||+|++.+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 578999999999999999986543
No 483
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=81.28 E-value=0.64 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=19.6
Q ss_pred eEEEECCCchhHHHHHHHHHHh
Q 004862 369 NVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 369 ~vLL~G~pGtGKt~la~~i~~~ 390 (726)
+|.|+|+||+|||+|+.++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999998654
No 484
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=81.27 E-value=0.82 Score=48.16 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..|.|+|+||+|||+|+..+...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999999998764
No 485
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=81.26 E-value=0.68 Score=51.63 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.4
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
.-|+|+|.||+|||++++.+++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999998754
No 486
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=81.23 E-value=0.7 Score=44.63 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
..++++|.+|+|||+|+..+...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999888755
No 487
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.03 E-value=0.87 Score=44.93 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.6
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..|.+.|.+|+|||++++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998875
No 488
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=80.97 E-value=1.4 Score=48.87 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..|.|+|.+|+|||++++++++.+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999998775
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=80.91 E-value=0.49 Score=47.54 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=22.5
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAP 392 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~ 392 (726)
..|.|.|.+|+|||++++.+++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988764
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.71 E-value=0.64 Score=51.93 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=0.0
Q ss_pred ccCcceEEEECCCchhHHHHHHH--HHHhCC---CcEEeCCC
Q 004862 364 LRGDVNVLLLGDPSTAKSQFLKF--VEKTAP---IAVYTSGK 400 (726)
Q Consensus 364 ~r~~~~vLL~G~pGtGKt~la~~--i~~~~~---~~~~~~g~ 400 (726)
+...-.++|+||+|+|||+|++. ++.+.+ ..++..|.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
No 491
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.69 E-value=0.77 Score=47.63 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=20.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHh
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKT 390 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~ 390 (726)
.-++|+|+||+|||+|+..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999888753
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=80.56 E-value=0.68 Score=45.60 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=23.1
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCCcEE
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPIAVY 396 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~~~~ 396 (726)
..+-|.|+||+|||++++.+++...-...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 34778999999999999999886654433
No 493
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=80.29 E-value=1.2 Score=43.87 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=16.8
Q ss_pred ceEEEECCCchhHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFV 387 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i 387 (726)
-+++++|++|+|||+++...
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 57999999999999866544
No 494
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=81.33 E-value=0.34 Score=46.25 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.6
Q ss_pred cceEEEECCCchhHHHHHHHHH
Q 004862 367 DVNVLLLGDPSTAKSQFLKFVE 388 (726)
Q Consensus 367 ~~~vLL~G~pGtGKt~la~~i~ 388 (726)
.+.|+++|++|+|||+|++.+.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 4789999999999999997764
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=80.13 E-value=0.92 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.0
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57899999999999999999987643
No 496
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.06 E-value=0.78 Score=47.13 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA 391 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~ 391 (726)
-.++++|++|+|||+++..++..+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999987654
No 497
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.85 E-value=0.78 Score=50.42 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=22.7
Q ss_pred ceEEEECCCchhHHHHHHHHHHhCCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTAPI 393 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~~~ 393 (726)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 46789999999999999999987654
No 498
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=79.73 E-value=5.2 Score=38.67 Aligned_cols=48 Identities=6% Similarity=0.075 Sum_probs=37.9
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHCCeEEEecCC
Q 004862 669 TQIKRRIPIGNQISERRLIDDLTRMGMNESIIRRALIIMHQRDEVEYKRER 719 (726)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~g 719 (726)
++|......+..++..+| |+.+|+++.++.+.|+.|.+.|+|...+.+
T Consensus 9 ~~I~~l~~~~~~~~~~~l---A~~l~vs~~tvs~~l~~Le~~GlV~r~~~~ 56 (214)
T 3hrs_A 9 KCLYELGTRHNKITNKEI---AQLMQVSPPAVTEMMKKLLAEELLIKDKKA 56 (214)
T ss_dssp HHHHHTTSSCSCCCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHhcCCCcCHHHH---HHHHCCChhHHHHHHHHHHHCCCEEEecCC
Confidence 333334344567888888 888899999999999999999999987654
No 499
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.65 E-value=0.83 Score=47.32 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.1
Q ss_pred ceEEEECCCchhHHHHHHHHHH
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEK 389 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~ 389 (726)
--++|.|+||+|||+|+..++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999987764
No 500
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=79.64 E-value=0.85 Score=48.17 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=23.2
Q ss_pred ceEEEECCCchhHHHHHHHHHHhC----CCcEEeCC
Q 004862 368 VNVLLLGDPSTAKSQFLKFVEKTA----PIAVYTSG 399 (726)
Q Consensus 368 ~~vLL~G~pGtGKt~la~~i~~~~----~~~~~~~g 399 (726)
.-++|.|+||+|||+|+..++... .+..|.+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 468999999999999998775432 23455544
Done!