Query 004863
Match_columns 726
No_of_seqs 140 out of 221
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 08:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 91.7 1.9 6.4E-05 41.2 12.4 149 58-227 55-206 (242)
2 2bpt_A Importin beta-1 subunit 89.7 3.2 0.00011 45.9 13.4 162 69-236 506-682 (861)
3 4fdd_A Transportin-1; heat rep 89.0 1.2 4.1E-05 50.3 9.7 159 73-239 495-675 (852)
4 1u6g_C TIP120 protein, CAND1; 88.8 4 0.00014 48.1 14.1 64 70-138 95-161 (1230)
5 3oc3_A Helicase MOT1, MOT1; re 88.7 0.53 1.8E-05 54.1 6.4 145 69-243 307-453 (800)
6 1u6g_C TIP120 protein, CAND1; 88.1 20 0.00069 42.3 19.4 104 69-187 56-165 (1230)
7 1qgr_A Protein (importin beta 86.7 4.6 0.00016 44.7 12.3 26 69-94 416-441 (876)
8 1wa5_C Importin alpha RE-expor 84.6 7.8 0.00027 44.8 13.3 53 56-110 493-557 (960)
9 2qk1_A Protein STU2; STU2P, XM 83.4 10 0.00035 37.4 11.9 156 69-235 68-234 (249)
10 2bpt_A Importin beta-1 subunit 82.8 11 0.00036 41.7 12.9 155 69-234 377-541 (861)
11 2x1g_F Cadmus; transport prote 81.0 66 0.0023 36.9 19.0 39 74-116 706-745 (971)
12 4fdd_A Transportin-1; heat rep 80.0 33 0.0011 38.7 15.9 65 68-137 407-471 (852)
13 1ibr_B P95, importin beta-1 su 79.4 4.4 0.00015 40.9 7.8 109 60-185 91-203 (462)
14 4ffb_C Protein STU2; tubulin f 79.2 3.4 0.00012 40.7 6.7 81 32-119 157-246 (278)
15 2x19_B Importin-13; nuclear tr 76.4 69 0.0024 36.5 17.2 79 74-166 698-781 (963)
16 1w63_A Adapter-related protein 75.2 15 0.00052 40.6 11.2 123 57-204 272-396 (618)
17 4ffb_C Protein STU2; tubulin f 75.1 7.1 0.00024 38.4 7.7 140 69-221 63-207 (278)
18 1qgr_A Protein (importin beta 73.7 27 0.00093 38.6 12.7 107 69-186 374-480 (876)
19 1b3u_A Protein (protein phosph 73.3 26 0.00089 36.6 11.8 117 69-202 172-290 (588)
20 1b3u_A Protein (protein phosph 70.7 22 0.00075 37.1 10.6 26 69-94 410-435 (588)
21 1w63_A Adapter-related protein 69.5 40 0.0014 37.3 12.9 60 68-137 320-379 (618)
22 3u0r_A Apoptosis inhibitor 5; 68.9 45 0.0015 37.6 12.9 179 7-203 171-354 (507)
23 2qk2_A LP04448P; mini spindles 68.6 23 0.00079 33.6 9.4 138 69-224 23-160 (242)
24 3ibv_A Exportin-T; karyopherin 68.0 43 0.0015 39.7 13.5 106 55-165 531-657 (980)
25 1ibr_B P95, importin beta-1 su 65.6 40 0.0014 33.9 10.9 124 70-203 268-418 (462)
26 3tj1_A RNA polymerase I-specif 64.0 29 0.00098 40.1 10.5 108 81-202 354-468 (649)
27 2x1g_F Cadmus; transport prote 63.9 44 0.0015 38.3 12.1 85 151-239 501-589 (971)
28 3m1i_C Exportin-1; heat repeat 63.7 14 0.00048 43.3 8.1 37 56-94 537-573 (1049)
29 1vsy_4 Proteasome activator BL 63.1 1E+02 0.0035 36.2 15.1 116 78-203 399-564 (799)
30 4b8j_A Importin subunit alpha- 61.6 98 0.0034 32.5 13.5 60 68-137 124-189 (528)
31 2vgl_B AP-2 complex subunit be 58.2 23 0.00079 38.8 8.2 117 68-202 246-362 (591)
32 2x19_B Importin-13; nuclear tr 58.2 2E+02 0.007 32.7 16.2 148 83-236 745-908 (963)
33 3tj1_A RNA polymerase I-specif 57.9 71 0.0024 36.9 12.3 145 24-204 108-261 (649)
34 2qk1_A Protein STU2; STU2P, XM 54.8 95 0.0033 30.4 11.3 143 69-225 24-174 (249)
35 1wa5_C Importin alpha RE-expor 54.1 2.5E+02 0.0084 32.5 16.1 56 74-138 471-526 (960)
36 4h7y_A Dual specificity protei 52.4 1.2E+02 0.0039 29.6 10.9 100 95-206 27-142 (161)
37 2vgl_A Adaptor protein complex 52.0 76 0.0026 35.4 11.2 136 69-229 299-436 (621)
38 3ul1_B Importin subunit alpha- 51.3 2.5E+02 0.0086 29.9 18.8 62 69-137 108-172 (510)
39 3ltm_A Alpha-REP4; protein eng 51.1 1.4E+02 0.0049 27.1 11.4 53 68-139 57-109 (211)
40 3bu8_A Telomeric repeat-bindin 50.3 30 0.001 35.4 6.8 47 54-100 35-81 (235)
41 1wa5_B Importin alpha subunit; 49.7 1.3E+02 0.0044 31.8 12.0 62 69-137 307-370 (530)
42 2vgl_B AP-2 complex subunit be 49.6 18 0.00061 39.7 5.6 33 59-93 353-385 (591)
43 4b8j_A Importin subunit alpha- 49.4 2.5E+02 0.0086 29.4 15.0 29 60-90 245-273 (528)
44 4gmo_A Putative uncharacterize 47.6 93 0.0032 35.1 11.1 69 71-139 492-570 (684)
45 1xqr_A HSPBP1 protein; armadil 46.3 76 0.0026 32.3 9.3 60 68-137 89-154 (296)
46 4db8_A Armadillo-repeat protei 43.3 93 0.0032 28.9 8.7 22 68-89 103-124 (252)
47 3tpo_A Importin subunit alpha- 42.6 3.4E+02 0.012 28.9 18.2 99 28-137 90-191 (529)
48 4db6_A Armadillo repeat protei 42.1 1.2E+02 0.0042 27.2 9.1 59 68-136 19-82 (210)
49 1wa5_B Importin alpha subunit; 40.8 60 0.002 34.4 7.8 65 68-137 222-286 (530)
50 3ul1_B Importin subunit alpha- 40.5 84 0.0029 33.6 8.9 23 68-90 323-345 (510)
51 3m1i_C Exportin-1; heat repeat 38.2 84 0.0029 36.8 9.1 41 74-116 247-290 (1049)
52 2jdq_A Importin alpha-1 subuni 38.1 1.8E+02 0.0062 29.1 10.5 119 68-203 71-202 (450)
53 1ldd_A APC2WHB, anaphase promo 35.6 23 0.00079 30.3 2.9 29 85-113 28-60 (74)
54 2jdq_A Importin alpha-1 subuni 35.2 98 0.0033 31.1 8.0 124 69-204 157-287 (450)
55 2of3_A ZYG-9; multifunctional 34.4 3.9E+02 0.013 27.3 12.6 74 156-230 168-244 (266)
56 3tpo_A Importin subunit alpha- 34.3 1.4E+02 0.0049 31.8 9.6 55 34-90 225-280 (529)
57 2vgl_A Adaptor protein complex 33.9 2.2E+02 0.0074 31.8 11.2 111 69-202 82-196 (621)
58 4db6_A Armadillo repeat protei 32.1 2.1E+02 0.0073 25.6 9.0 105 68-186 61-168 (210)
59 4hxt_A De novo protein OR329; 28.2 2.8E+02 0.0095 25.2 9.2 66 60-137 45-115 (252)
60 1vsy_4 Proteasome activator BL 28.0 2E+02 0.0067 33.8 9.9 17 99-115 226-242 (799)
61 1x5b_A Signal transducing adap 25.2 52 0.0018 31.2 3.7 52 182-233 41-92 (163)
62 1oyz_A Hypothetical protein YI 25.2 4.4E+02 0.015 24.9 15.2 21 69-89 31-51 (280)
63 4hat_C Exportin-1; heat repeat 24.8 4E+02 0.014 31.9 11.9 103 28-137 773-882 (1023)
64 4gmo_A Putative uncharacterize 24.6 2.5E+02 0.0084 31.6 9.7 93 55-162 34-133 (684)
65 3s51_A Protein FACI, fanconi a 24.3 2.8E+02 0.0094 34.8 10.5 112 82-206 174-297 (1308)
66 3a6p_A Exportin-5; exportin-5, 24.0 2.3E+02 0.008 34.2 9.8 85 151-237 529-628 (1204)
67 3vi8_A Peroxisome proliferator 23.2 1.6E+02 0.0054 29.7 7.1 21 28-48 156-176 (273)
68 4hat_C Exportin-1; heat repeat 23.0 1E+03 0.035 28.4 17.1 106 150-261 792-912 (1023)
69 3l6a_A Eukaryotic translation 22.3 1.8E+02 0.0061 30.9 7.5 73 9-94 181-253 (364)
70 3d3m_A Eukaryotic translation 21.9 2.1E+02 0.0073 26.8 7.2 17 72-88 34-50 (168)
71 1mhq_A ADP-ribosylation factor 21.9 1.1E+02 0.0039 28.4 5.3 69 163-232 9-77 (148)
72 4hxt_A De novo protein OR329; 21.6 4.5E+02 0.015 23.7 13.7 24 68-91 9-32 (252)
73 3e3v_A Regulatory protein RECX 21.4 90 0.0031 29.7 4.6 75 189-265 97-175 (177)
74 3bqo_A Telomeric repeat-bindin 21.0 1.3E+02 0.0044 30.5 5.6 103 55-162 42-145 (211)
75 3dzy_D Peroxisome proliferator 20.7 1.2E+02 0.0043 32.4 6.0 49 91-141 334-387 (419)
76 3ebb_A Phospholipase A2-activa 20.6 2.1E+02 0.0071 29.7 7.4 83 84-177 121-212 (304)
77 3pst_A Protein DOA1; protein d 20.3 87 0.003 34.5 4.7 44 85-138 246-289 (425)
78 1dvp_A HRS, hepatocyte growth 20.3 1.2E+02 0.0041 29.6 5.3 69 163-232 13-81 (220)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.75 E-value=1.9 Score=41.25 Aligned_cols=149 Identities=9% Similarity=0.145 Sum_probs=87.5
Q ss_pred HHHHHhhhhhhhc-cCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhh
Q 004863 58 LPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVA 136 (726)
Q Consensus 58 ~pl~k~LVs~~LL-kHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLA 136 (726)
..++..|. .+| +.++..||..++-||..|.+-..++ | ..++..|+..++..|. |....--......|.++.
T Consensus 55 ~~i~~~L~--~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~-~~~~~~ilp~ll~~l~---d~~~~vr~~a~~aL~~~~ 126 (242)
T 2qk2_A 55 GALVSALK--KVITKDSNVVLVAMAGKCLALLAKGLAKR--F-SNYASACVPSLLEKFK---EKKPNVVTALREAIDAIY 126 (242)
T ss_dssp HHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHGGG--G-HHHHHHHHHHHHHGGG---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHHhhh--H-HHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence 34444443 245 4788889999999999999876652 2 3466666666666654 554444445566666665
Q ss_pred hhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCCHHHHHHHHHHhhccCCCCCchHH
Q 004863 137 KVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVRKENQDVSPTSW 214 (726)
Q Consensus 137 eVKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE--~VP~eVLDvIL~~ll~~~ks~~PaAy 214 (726)
.. +. +..++..++..+.... ..|......+|..++.... .+....+..|+..+..--.+..+.-+
T Consensus 127 ~~--------~~----~~~ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR 193 (242)
T 2qk2_A 127 AS--------TS----LEAQQESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193 (242)
T ss_dssp TT--------SC----HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred Hc--------CC----HHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHH
Confidence 42 11 2344555566666554 4788888888888887753 34455555555544433234444444
Q ss_pred HHHHHHHhhhHHH
Q 004863 215 KLGEKVFTKCAAK 227 (726)
Q Consensus 215 kLA~~VI~~CadK 227 (726)
.-|...+......
T Consensus 194 ~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 194 DSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5554444443333
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.71 E-value=3.2 Score=45.87 Aligned_cols=162 Identities=11% Similarity=0.105 Sum_probs=79.8
Q ss_pred hccCCC--cCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhccc--------CCCC-CcchhhHHHHHHHhhh
Q 004863 69 LLRRSD--MDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL--------SHAS-GRYYMKALSILDTVAK 137 (726)
Q Consensus 69 LLkHKD--kdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~L--------sD~s-sp~Y~q~~yLLEsLAe 137 (726)
+|.+.| ..||..++.+|..|.....++ ....+..++..++..|... .+.+ .....-+..+++.|..
T Consensus 506 ~l~~~d~~~~vr~~a~~al~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 582 (861)
T 2bpt_A 506 AANRIDNEFNARASAFSALTTMVEYATDT---VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA 582 (861)
T ss_dssp HHTCSCCGGGHHHHHHHHHHHHHHHCCGG---GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcchHHHHHHHHHHHHHHHHcchh---hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence 456555 689999999999999875443 1234555555555555432 1111 1222223344444443
Q ss_pred hhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc----CCCCHHHHHHHHHHhhccCCCCCchH
Q 004863 138 VRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES----EDVSWDLLRILLASVRKENQDVSPTS 213 (726)
Q Consensus 138 VKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeES----E~VP~eVLDvIL~~ll~~~ks~~PaA 213 (726)
+=.. +.-+....+..++..++..++...+..|.......+..++.-. ...-..++..|+..+...+......|
T Consensus 583 l~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a 659 (861)
T 2bpt_A 583 VIRK---SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659 (861)
T ss_dssp HHHH---CGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHH---hhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3111 1112234556666666666665443134333333333333222 11123466666666633333233345
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 004863 214 WKLGEKVFTKCAAKLKTNLKEAV 236 (726)
Q Consensus 214 ykLA~~VI~~CadKLqp~I~q~~ 236 (726)
..+...++..+...+.||+..++
T Consensus 660 ~~~l~~l~~~~~~~~~~~~~~l~ 682 (861)
T 2bpt_A 660 VGFIADISNSLEEDFRRYSDAMM 682 (861)
T ss_dssp HHHHHHHHHHTGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhchhccchHHHHH
Confidence 55555666666666666655544
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=89.03 E-value=1.2 Score=50.30 Aligned_cols=159 Identities=9% Similarity=0.167 Sum_probs=89.6
Q ss_pred CCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCCchHH
Q 004863 73 SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKL 152 (726)
Q Consensus 73 KDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE~ddL 152 (726)
.+......+.-||.-|.....+. -...+.+..|+..++..+..|.|.+... ..+++.++.+-..+ .. ..-..
T Consensus 495 ~~~~~~~~~~~ai~~l~~~~~~~-~~~~~~~~~l~p~l~~~~~~l~d~~~~~----~~~~~~l~~i~~~~-g~--~~~~~ 566 (852)
T 4fdd_A 495 YQHKNLLILYDAIGTLADSVGHH-LNKPEYIQMLMPPLIQKWNMLKDEDKDL----FPLLECLSSVATAL-QS--GFLPY 566 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGG-GCCHHHHHHHHHHHHHHHHHSCTTCTTH----HHHHHHHHHHHHHH-GG--GGHHH
T ss_pred hChHHHHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHH-hH--hHHHH
Confidence 33444455667777776554332 1224567788888888888887754333 25666666553222 11 22233
Q ss_pred HHHHHHHHHHHhhcC---------------C-chhHHHHHHHHHHHHhcccCC-C-----CHHHHHHHHHHhhccCCCCC
Q 004863 153 VVEMFQHFLKVIRSN---------------H-PHFVFAAMETIMTLVIDESED-V-----SWDLLRILLASVRKENQDVS 210 (726)
Q Consensus 153 I~eLFktFFdiVr~d---------------h-p~~V~~~M~dIMs~VIeESE~-V-----P~eVLDvIL~~ll~~~ks~~ 210 (726)
+..+|..++..++.. . ...+.....+.+..++...+. + ...++..|+..+-.......
T Consensus 567 ~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr 646 (852)
T 4fdd_A 567 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR 646 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH
Confidence 344444444433321 1 133555555555555544321 1 13578877777754444445
Q ss_pred chHHHHHHHHHhhhHHHHHHHHHHHHHhc
Q 004863 211 PTSWKLGEKVFTKCAAKLKTNLKEAVQSR 239 (726)
Q Consensus 211 PaAykLA~~VI~~CadKLqp~I~q~~ns~ 239 (726)
-.|+.+-..++..|...+.+|+..++..+
T Consensus 647 ~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 647 QSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56777778888888888999988877544
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=88.79 E-value=4 Score=48.11 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=42.9
Q ss_pred ccCCCcCchhhhHHHHHHHhhhcCCC---CCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhh
Q 004863 70 LRRSDMDVRLSVTSCISEITRITAPD---SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (726)
Q Consensus 70 LkHKDkdVRayVAcCLaDILRIyAPD---APYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeV 138 (726)
|.+.+..||..++-||..|.+.+.|+ ..+......+++.+++..|.. ++.+..+.+.|+.|.++
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADM 161 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHH
Confidence 45677889999999999999998887 344445677777777776642 23345555566665554
No 5
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=88.71 E-value=0.53 Score=54.11 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=101.5
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE 148 (726)
-|...|.|||+.+|.||..|. ..+++..|+..+-++|..|.| -+++=..-+-||..|-..... ... +
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~~-a~~--d 373 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENPE-LSI--P 373 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCTT-CCC--C
T ss_pred hcCCcccHHHHHHHHHhhhhc---------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCcc-ccc--C
Confidence 345678999999999999988 236799999999999999966 455556666677666555421 111 1
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHh--hhHH
Q 004863 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFT--KCAA 226 (726)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~--~Cad 226 (726)
..|+-.||--|.. .-.+|+.+....|..++ -..++..|+++++=+.. .....++.+|.. ...
T Consensus 374 -p~LVPRL~PFLRH-----tITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~n---eeIl~lS~~VWk~r~~L- 437 (800)
T 3oc3_A 374 -PERLKDIFPCFTS-----PVPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEK---DEIREMAIKLLKKRRDL- 437 (800)
T ss_dssp -SGGGGGTGGGGTC-----SSHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSC---HHHHHHHHHHHHTCSCC-
T ss_pred -hHHHHHHHhhhcC-----CcHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHH-
Confidence 2566666544432 23568887777776666 67899999999875443 345667777775 222
Q ss_pred HHHHHHHHHHHhcCCCc
Q 004863 227 KLKTNLKEAVQSRGIAL 243 (726)
Q Consensus 227 KLqp~I~q~~ns~G~~L 243 (726)
+++.|+.+.+-.|+++
T Consensus 438 -l~~wi~L~MtPIGv~f 453 (800)
T 3oc3_A 438 -PKNLILHFMNVIGGSL 453 (800)
T ss_dssp -CHHHHHHHHHHTTSCS
T ss_pred -HHHHHHHhcCcCCCcc
Confidence 9999999999999983
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=88.09 E-value=20 Score=42.25 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=62.5
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE 148 (726)
.|.+.+..||..++.||..|...+.+ .++..|+..++..| .|++... +......|+.+-..+ .-+
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~v---R~~a~~~L~~i~~~l---~~~ 120 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQL---RDISSIGLKTVIGEL---PPA 120 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSHH---HHHHHHHHHHHHHHC---C--
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHh---cCCcHHH---HHHHHHHHHHHHHhC---CCc
Confidence 35689999999999999999975422 56777777777664 4544322 333444444332211 111
Q ss_pred ------chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc
Q 004863 149 ------CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES 187 (726)
Q Consensus 149 ------~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeES 187 (726)
......+++..++..+.+.....+......++..+++..
T Consensus 121 ~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 123456666666666653234567777777788887643
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=86.74 E-value=4.6 Score=44.70 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.2
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCC
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAP 94 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAP 94 (726)
+|.+.+..||..++.||..+...+.+
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 45677788999999999999888766
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=84.58 E-value=7.8 Score=44.84 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=35.1
Q ss_pred hhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcC------CC------CCCChhHHHHHHHHH
Q 004863 56 ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA------PD------SPYDDELMKEFFQLA 110 (726)
Q Consensus 56 SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyA------PD------APYtDdqLKDIFqLf 110 (726)
-+.+++..|++ .|.+.+.-||.++|.||..++.... |+ .||-..-|..+|.++
T Consensus 493 ~l~~~l~~l~~--~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll 557 (960)
T 1wa5_C 493 QLIELMPILAT--FLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI 557 (960)
T ss_dssp HHHHHHHHHHH--HTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH
Confidence 35566666665 3456678899999999999988643 22 366665555555554
No 9
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=83.36 E-value=10 Score=37.42 Aligned_cols=156 Identities=8% Similarity=0.128 Sum_probs=90.3
Q ss_pred hc-cCCCcCchhhhHHHHHHHhhhcC-CCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeecc
Q 004863 69 LL-RRSDMDVRLSVTSCISEITRITA-PDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (726)
Q Consensus 69 LL-kHKDkdVRayVAcCLaDILRIyA-PDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlD 146 (726)
.| +.+|..|+..++-||..|.+-.+ |. |.-.....|+-.++..| .|....--....+.|.+|...=.=+ +.-
T Consensus 68 ~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~~y~~~llp~ll~~l---~dkk~~V~~aa~~al~~i~~~~~~~-~~~ 141 (249)
T 2qk1_A 68 IIQKDANIQAVALAAQSVELICDKLKTPG--FSKDYVSLVFTPLLDRT---KEKKPSVIEAIRKALLTICKYYDPL-ASS 141 (249)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCHHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHHHHHSCTT-CTT
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHcccc-ccC
Confidence 45 67788889999999999998877 66 33234455555555555 4443333345566677776631000 000
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCC--------CHHHHHHHHHHhhccCCCCCchHHHHHH
Q 004863 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV--------SWDLLRILLASVRKENQDVSPTSWKLGE 218 (726)
Q Consensus 147 LE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~V--------P~eVLDvIL~~ll~~~ks~~PaAykLA~ 218 (726)
-.-++|+..|| ..+.... ..|.......|..+++.+... +..++..|...+-..+....-+|+....
T Consensus 142 ~~l~~ll~~l~----~~l~~k~-~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 142 GRNEDMLKDIL----EHMKHKT-PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp CTTHHHHHHHH----HHTTCSS-HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH----HHHcCCC-hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00345555555 4444443 367778888888999888754 3444554444443333334445555555
Q ss_pred HHHhhhHHH-HHHHHHHH
Q 004863 219 KVFTKCAAK-LKTNLKEA 235 (726)
Q Consensus 219 ~VI~~CadK-Lqp~I~q~ 235 (726)
.++...+.+ |.||+..+
T Consensus 217 ~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 217 ILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHCSGGGHHHHHHS
T ss_pred HHHHHhCHHHHHHHHHHH
Confidence 555555554 77777664
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=82.78 E-value=11 Score=41.72 Aligned_cols=155 Identities=6% Similarity=0.014 Sum_probs=77.8
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE 148 (726)
+|.+.+..+|-.++.||..|.+-+.|+ .-...+..|+..++. .|.|++...-....+.|.+++..-. -++.
T Consensus 377 ~l~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~il~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~ 447 (861)
T 2bpt_A 377 NITADNWRNREAAVMAFGSIMDGPDKV--QRTYYVHQALPSILN---LMNDQSLQVKETTAWCIGRIADSVA----ESID 447 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHH--HHHHHHHHHHHHHHH---GGGCSCHHHHHHHHHHHHHHHHHHG----GGSC
T ss_pred HcCCCChhHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHHHHhh----hhcC
Confidence 456788889999899999887543211 001334444444444 3455421112223445555554321 1222
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CC---CHHHHHHHHHHhhccC--CCCCchHHHHHH
Q 004863 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DV---SWDLLRILLASVRKEN--QDVSPTSWKLGE 218 (726)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE-----~V---P~eVLDvIL~~ll~~~--ks~~PaAykLA~ 218 (726)
....+..++..++..+.++ ..|.......+..+++... .+ -..++..|+..+...+ ....-.|+....
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 3345666666666666553 5677666666666665432 12 1345555555444222 112223444444
Q ss_pred HHHhhhHHHHHHHHHH
Q 004863 219 KVFTKCAAKLKTNLKE 234 (726)
Q Consensus 219 ~VI~~CadKLqp~I~q 234 (726)
.++..+...+.+|+.+
T Consensus 526 ~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 526 TMVEYATDTVAETSAS 541 (861)
T ss_dssp HHHHHCCGGGHHHHHH
T ss_pred HHHHHcchhhHHHHHH
Confidence 5555555444444433
No 11
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=81.00 E-value=66 Score=36.89 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=28.3
Q ss_pred CcCchhhhHHHHHHHhhhcCCC-CCCChhHHHHHHHHHHHHhcc
Q 004863 74 DMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFEN 116 (726)
Q Consensus 74 DkdVRayVAcCLaDILRIyAPD-APYtDdqLKDIFqLfV~qf~~ 116 (726)
|.+|.-.++-|+..+++.|-.+ .|| |-.++.+++..|..
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p~----l~~~~~~l~~~~~~ 745 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQPM----LQDLCLFIVASFQT 745 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CTH----HHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHhhhhhcccc----HHHHHHHHHHHHhc
Confidence 5567777777888888887666 566 77888888877764
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=80.05 E-value=33 Score=38.67 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=41.4
Q ss_pred hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhh
Q 004863 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAe 137 (726)
.+|.+.+..||..++-||..|...+.+.. ....+..++..++..+. |.+...-......|.+|++
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQP--PDTYLKPLMTELLKRIL---DSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSC--TTTTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHH
Confidence 35688899999999999999988765532 23346667777766553 3322223334555555554
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=79.40 E-value=4.4 Score=40.94 Aligned_cols=109 Identities=11% Similarity=0.142 Sum_probs=61.6
Q ss_pred HHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCC-Ccc-hhhHHHHHHHhhh
Q 004863 60 TMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHAS-GRY-YMKALSILDTVAK 137 (726)
Q Consensus 60 l~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~s-sp~-Y~q~~yLLEsLAe 137 (726)
+...|+. +|.+.+..| ..+|-||+.|.+...|+.-|. +++.+++..+. +.. ++. -.-.+.+|..|.+
T Consensus 91 ik~~ll~--~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~-----~ll~~L~~~l~---~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 91 VKNYVLQ--TLGTETYRP-SSASQCVAGIACAEIPVNQWP-----ELIPQLVANVT---NPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHH--HTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT-----THHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HhCCCCchh-hHHHHHHHHHHHHhccccccH-----HHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHH
Confidence 3344443 466778889 889999999999987764442 34455555443 221 221 1123344444433
Q ss_pred h-hhheeeccCCchHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhc
Q 004863 138 V-RSCLLMLDLECDKLVVEMFQHFLKVIRSNH-PHFVFAAMETIMTLVID 185 (726)
Q Consensus 138 V-KS~VLmlDLE~ddLI~eLFktFFdiVr~dh-p~~V~~~M~dIMs~VIe 185 (726)
- +.- + -...+..+|..|+..+.... ...|+......+..+++
T Consensus 160 ~~~~~-----~-~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 160 DIDPE-----Q-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp HSCGG-----G-TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred hCCch-----h-hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 110 0 13445567777777776553 46677777777776654
No 14
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=79.21 E-value=3.4 Score=40.69 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCCCC-----CCCh----hH
Q 004863 32 INLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDS-----PYDD----EL 102 (726)
Q Consensus 32 LKRLkkL~~eLs~lDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAPDA-----PYtD----dq 102 (726)
...|.-|..+|......... ....+..+++.| ..+|.|.|.+||-.+.-||++|+|++-+.. +|-+ .+
T Consensus 157 ~~~l~~l~~~l~~fg~~~~~-~k~~l~~i~~~l--~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~ 233 (278)
T 4ffb_C 157 AAAANCVYELMAAFGLTNVN-VQTFLPELLKHV--PQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQ 233 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTCC-HHHHHHHHGGGH--HHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCcCC-chhHHHHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHH
Confidence 33444555555554332222 111223343433 368999999999999999999999987653 3422 46
Q ss_pred HHHHHHHHHHHhcccCC
Q 004863 103 MKEFFQLAVSAFENLSH 119 (726)
Q Consensus 103 LKDIFqLfV~qf~~LsD 119 (726)
+++|+.. |..+.+
T Consensus 234 ~k~le~~----f~k~~~ 246 (278)
T 4ffb_C 234 VKDLHKL----FAKVGD 246 (278)
T ss_dssp HHHHHHH----HSCCCC
T ss_pred HHHHHHH----HHhcCC
Confidence 7776654 455543
No 15
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=76.44 E-value=69 Score=36.50 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=42.1
Q ss_pred CcCchhhhHHHHHHHhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeecc--CC--
Q 004863 74 DMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD--LE-- 148 (726)
Q Consensus 74 DkdVRayVAcCLaDILRIyAPD-APYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlD--LE-- 148 (726)
+..|.=.++-|+..+++.+-++ .|| |-.++.+++..+.+- + ....++++..+... + -.+ ..
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~----l~~~~~~l~~~~~~~-----~-~~~~l~l~~~li~~--f--~~~~~~~~~ 763 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPM----VPQLCEMLGRMYSTI-----P-QASALDLTRQLVHI--F--AHEPAHFPP 763 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGG----HHHHHHHHHHHHHHS-----C-CHHHHHHHHHHHHH--H--TTCTTTCHH
T ss_pred chHHHHHHHHHHHHHHHhhccccccc----HHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHH--h--CCCcchHHH
Confidence 4456666666777777766555 455 666666666666541 1 23455565555321 1 111 11
Q ss_pred chHHHHHHHHHHHHHhhc
Q 004863 149 CDKLVVEMFQHFLKVIRS 166 (726)
Q Consensus 149 ~ddLI~eLFktFFdiVr~ 166 (726)
...++..+|+.+|.++..
T Consensus 764 ~~~~l~~~~~~~l~~~~~ 781 (963)
T 2x19_B 764 IEALFLLVTSVTLTLFQQ 781 (963)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 234555666666666654
No 16
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=75.16 E-value=15 Score=40.63 Aligned_cols=123 Identities=10% Similarity=0.124 Sum_probs=65.7
Q ss_pred hHHHHHhhhhh-hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcc-cCCCCCcchhhHHHHHHH
Q 004863 57 LLPTMKGLITN-DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFEN-LSHASGRYYMKALSILDT 134 (726)
Q Consensus 57 L~pl~k~LVs~-~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~-LsD~ssp~Y~q~~yLLEs 134 (726)
+..+...|+.+ ..++|.+..|..-++-||..| .++ ..+.. ..+..|.. |.+. ++ .-++..|.+
T Consensus 272 ~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~-----~~l~~---~a~~~L~~~L~~~-d~--~vr~~aL~~ 336 (618)
T 1w63_A 272 MNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSE-----SGLRV---LAINILGRFLLNN-DK--NIRYVALTS 336 (618)
T ss_dssp THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCC-----HHHHH---HHHHHHHHHHTCS-ST--TTHHHHHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCC-----HHHHH---HHHHHHHHHHhCC-CC--chHHHHHHH
Confidence 33444444432 245677777887788887764 121 22221 22222222 3332 22 334445666
Q ss_pred hhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Q 004863 135 VAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK 204 (726)
Q Consensus 135 LAeVKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~ 204 (726)
|..+-.. ...++...+..||.... +-+..|...-.++|..+.++.. + ..++..|+.++..
T Consensus 337 L~~i~~~-------~p~~~~~~~~~i~~~l~-d~d~~Ir~~alelL~~l~~~~n-v-~~iv~eL~~~l~~ 396 (618)
T 1w63_A 337 LLKTVQT-------DHNAVQRHRSTIVDCLK-DLDVSIKRRAMELSFALVNGNN-I-RGMMKELLYFLDS 396 (618)
T ss_dssp HHHHHHH-------HHHHHGGGHHHHHHGGG-SSCHHHHHHHHHHHHHHCCSSS-T-HHHHHHHHHHHHH
T ss_pred HHHHHhh-------CHHHHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHccccc-H-HHHHHHHHHHHHh
Confidence 6655322 12445555556666555 3345677777788888877643 2 5677777777664
No 17
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=75.15 E-value=7.1 Score=38.38 Aligned_cols=140 Identities=9% Similarity=0.058 Sum_probs=62.7
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHH-hc-ccCCCCCcchhhHHHHHHHhhhhhhheeecc
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA-FE-NLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~q-f~-~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlD 146 (726)
+|.-+|.-|...+.-||..++..+.+...... ...-+...|+.. +. .|.+.....-...+..|-.+...-
T Consensus 63 ~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~------- 134 (278)
T 4ffb_C 63 YITDSNVVAQEQAIVALNSLIDAFASSSLKNA-HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD------- 134 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCC---CCHH-HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-------
T ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-------
Confidence 44444555555556678888888777643322 222222333332 22 366654332223333332222110
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc--CCCC-HHHHHHHHHHhhccCCCCCchHHHHHHHHH
Q 004863 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES--EDVS-WDLLRILLASVRKENQDVSPTSWKLGEKVF 221 (726)
Q Consensus 147 LE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeES--E~VP-~eVLDvIL~~ll~~~ks~~PaAykLA~~VI 221 (726)
...+. ++..++....... .+|.......|..+|.+. ..++ ...+..|+..+..--....+..+.-|..++
T Consensus 135 ~~~~~----~~e~l~~~l~~Kn-pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 135 TSITQ----SVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp SSSHH----HHHHHGGGGGCSC-HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred CcHHH----HHHHHHHHHhccC-HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 01122 2333344334344 456666677778888884 3455 345665554443322233344444444433
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=73.65 E-value=27 Score=38.59 Aligned_cols=107 Identities=9% Similarity=0.051 Sum_probs=61.6
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE 148 (726)
+|.+.+..||..++.||..|..-+.|+. -...+..++..++..| .|+........+..|.+++..-.- .+.
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~----~~~ 444 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQ--LKPLVIQAMPTLIELM---KDPSVVVRDTAAWTVGRICELLPE----AAI 444 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHH--HHHHHHHHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHCGG----GTS
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhCch----hcc
Confidence 4567888899988889988875443320 1134555666555554 454433344556667666654211 111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 004863 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (726)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeE 186 (726)
....+..++..++..+.++ ..|.......|..++..
T Consensus 445 ~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 445 NDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp STTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 2345666677777766652 56666555555666654
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=73.25 E-value=26 Score=36.57 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=54.6
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE 148 (726)
++.+.|..||..++.+|..|.+.+.++ ..+..++.+|+..+ .|.+...-......|..++.. ++
T Consensus 172 l~~d~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~---~d~~~~vr~~a~~~l~~l~~~--------~~ 235 (588)
T 1b3u_A 172 LCSDDTPMVRRAAASKLGEFAKVLELD-----NVKSEIIPMFSNLA---SDEQDSVRLLAVEACVNIAQL--------LP 235 (588)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHTSCHH-----HHHHTHHHHHHHHH---TCSCHHHHTTHHHHHHHHHHH--------SC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcHH-----hHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHh--------CC
Confidence 456777788888888888877764331 12233444444333 232211111122333333221 22
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCCHHHHHHHHHHh
Q 004863 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASV 202 (726)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE--~VP~eVLDvIL~~l 202 (726)
.+.+...++..+..... +....|+......|..+..-.. .+...++..++.-+
T Consensus 236 ~~~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 290 (588)
T 1b3u_A 236 QEDLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290 (588)
T ss_dssp HHHHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh
Confidence 23333334444444433 3345577766666666655321 12334555555544
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=70.67 E-value=22 Score=37.11 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=12.7
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCC
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAP 94 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAP 94 (726)
++.+.+-.||..++.||..|.+.+-+
T Consensus 410 ~~~d~~~~vr~~~~~~l~~l~~~~~~ 435 (588)
T 1b3u_A 410 LAEDAKWRVRLAIIEYMPLLAGQLGV 435 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCG
T ss_pred HhcCCCchHHHHHHHHHHHHHHHcCH
Confidence 34444555555555555555544443
No 21
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=69.49 E-value=40 Score=37.32 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=35.5
Q ss_pred hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhh
Q 004863 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAe 137 (726)
.||.+.|..||..+-.+|..|.+.. | .-+...+..| |.-|.|.+..--.+.+.+|-.|+.
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~~-p------~~~~~~~~~i---~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQTD-H------NAVQRHRSTI---VDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHHH-H------HHHGGGHHHH---HHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCchHHHHHHHHHHHHhhC-H------HHHHHHHHHH---HHHccCCChhHHHHHHHHHHHHcc
Confidence 3688999999999999999999762 2 1222222233 334455443333445566655544
No 22
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=68.86 E-value=45 Score=37.56 Aligned_cols=179 Identities=17% Similarity=0.196 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhh-hhhccCCCcCchhhhHHHH
Q 004863 7 EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT-NDLLRRSDMDVRLSVTSCI 85 (726)
Q Consensus 7 ~~ele~~l~~~G~kLis~piStdELLKRLkkL~~eLs~lDQ~pvdS~~~SL~pl~k~LVs-~~LLkHKDkdVRayVAcCL 85 (726)
.+|.|+-+.+.-.+++ -..+.+|..- |..+-..|.-.+. +.. +..|..+....+. ..-+...|.+.=--...|+
T Consensus 171 ~~E~E~~i~~~ikK~L-~DVT~~EF~L-~m~lL~~lkl~~t-~~g--~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~ 245 (507)
T 3u0r_A 171 TKEVEELILTESKKVL-EDVTGEEFVL-FMKILSGLKSLQT-VSG--RQQLVELVAEQADLEQTFNPSDPDCVDRLLQCT 245 (507)
T ss_dssp CHHHHHHHHHHHHHHT-TSCCHHHHHH-HHHHHHTSGGGSS-HHH--HHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-ccccHHHHHH-HHHHHHhcccccC-chH--HHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHH
Confidence 4677888888888877 5666666532 2333344444432 222 3344444433321 1234545655555566777
Q ss_pred HHHhhhcCCCCCCChhHHHHHHHHHHHH-hcccCCCCCc--chhhHHHHHHHhhhhhhheeeccCC-chHHHHHHHHHHH
Q 004863 86 SEITRITAPDSPYDDELMKEFFQLAVSA-FENLSHASGR--YYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFL 161 (726)
Q Consensus 86 aDILRIyAPDAPYtDdqLKDIFqLfV~q-f~~LsD~ssp--~Y~q~~yLLEsLAeVKS~VLmlDLE-~ddLI~eLFktFF 161 (726)
-..|=+|++.+. -..+|.+|..+ |+.|.+...+ --...+.||..||++-++. -+++ +.+++..+|++|+
T Consensus 246 ~~ALP~FS~~v~-----StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~--~~~e~a~~~l~~iy~~L~ 318 (507)
T 3u0r_A 246 RQAVPLFSKNVH-----STRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC--GDMEKLETNLRKLFDKLL 318 (507)
T ss_dssp HHHGGGCBTTBC-----CHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC--CCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCC-----hHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCC--CccchHHHHHHHHHHHHH
Confidence 888888887776 44588888888 8888775443 2247889999999997773 5565 7889999999999
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Q 004863 162 KVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVR 203 (726)
Q Consensus 162 diVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll 203 (726)
..+- ..|..+.. =.++. ++-..+....+.+||..|-
T Consensus 319 ~ymP-~~p~~~~~-~~~~~----~~~p~l~fS~vECLLy~fH 354 (507)
T 3u0r_A 319 EYMP-LPPEEAEN-GENAG----NEEPKLQFSYVECLLYSFH 354 (507)
T ss_dssp TTSC-CCC-------------------CCCHHHHHHHHHHHH
T ss_pred HHCC-CCcccccc-ccccc----ccCcccchhHHHHHHHHHH
Confidence 8665 23322210 01111 3455688888999997654
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=68.58 E-value=23 Score=33.63 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=86.9
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE 148 (726)
.|..+|-.+|.-++-+|..++.-+ |. +....+.+|+..+...|. .|.+..-....+..|..|+.. +--+
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~-~~--~~~~~~~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~----l~~~-- 91 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDH-PK--LENGEYGALVSALKKVIT--KDSNVVLVAMAGKCLALLAKG----LAKR-- 91 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHC-SS--BCCCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHH----HGGG--
T ss_pred hhccCCHHHHHHHHHHHHHHHccC-CC--CCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHH----Hhhh--
Confidence 457889999999999999999863 33 222335677777766652 144444455667777777742 1111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhh
Q 004863 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKC 224 (726)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~C 224 (726)
-...+..++..++....+. ...|+......|..++.... ...++..|+..+.. .+|..+.-+-..|..+
T Consensus 92 ~~~~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~----~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS--LEAQQESIVESLSN----KNPSVKSETALFIARA 160 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC----CChHHHHHHHHHHHHH
Confidence 2467777888888877654 45688888888888877543 24567776666542 2455555555555444
No 24
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=68.05 E-value=43 Score=39.72 Aligned_cols=106 Identities=11% Similarity=0.138 Sum_probs=70.4
Q ss_pred HhhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCCC-CCCChhHHHHHHHHHHHHhcc--c--CCC---------
Q 004863 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFEN--L--SHA--------- 120 (726)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAPD-APYtDdqLKDIFqLfV~qf~~--L--sD~--------- 120 (726)
.-|.+++..|+++--|.|++..||..+|..|.-+.+-+.+. .||-+. |++.+-..|.. . .+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcCCCCCcccccccchhh
Confidence 35678888889888889999999999999999999998887 576544 44333333321 1 111
Q ss_pred --CCcchhhHHHHHHHhhhhhhheeeccCC-----chHHHHHHHHHHHHHhh
Q 004863 121 --SGRYYMKALSILDTVAKVRSCLLMLDLE-----CDKLVVEMFQHFLKVIR 165 (726)
Q Consensus 121 --ssp~Y~q~~yLLEsLAeVKS~VLmlDLE-----~ddLI~eLFktFFdiVr 165 (726)
++..|...+||.|.++.+=+.+-. ..+ .+.|+..+|+.+-..+.
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~-~~e~~~~~l~~ll~pl~~~l~~~l~ 657 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNL-TPEEQALYCDSLINALIGKANAALS 657 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112578899999999988555321 111 34666666666666554
No 25
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=65.56 E-value=40 Score=33.94 Aligned_cols=124 Identities=10% Similarity=0.110 Sum_probs=61.6
Q ss_pred ccCCCcCchhhhHHHHHHHhhhc-------C-------C--CCCCC--hhHHHHHHHHHHHHhcccCC-CCCcchhhH--
Q 004863 70 LRRSDMDVRLSVTSCISEITRIT-------A-------P--DSPYD--DELMKEFFQLAVSAFENLSH-ASGRYYMKA-- 128 (726)
Q Consensus 70 LkHKDkdVRayVAcCLaDILRIy-------A-------P--DAPYt--DdqLKDIFqLfV~qf~~LsD-~ssp~Y~q~-- 128 (726)
+.+.+.+||..+.-++..+.+.- . | ...+. ...+..|+..++..|....+ .++..|.-+
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 45778888887777766666542 0 0 11111 12356666666666654321 112223333
Q ss_pred -HHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCCHHHHHHHHHHh
Q 004863 129 -LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVSWDLLRILLASV 202 (726)
Q Consensus 129 -~yLLEsLAeVKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE-----~VP~eVLDvIL~~l 202 (726)
...|..|+.+- + +.++..++..+...+.+. .-.+.......|..+.+... ..-..++..|+..+
T Consensus 348 a~~~L~~l~~~~--------~-~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l 417 (462)
T 1ibr_B 348 AGVCLMLLATCC--------E-DDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417 (462)
T ss_dssp HHHHHHHHHHHT--------T-TTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG
T ss_pred HHHHHHHHHHhc--------c-HHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 34444444431 1 244445555555544433 34455555666666665432 11145666666666
Q ss_pred h
Q 004863 203 R 203 (726)
Q Consensus 203 l 203 (726)
.
T Consensus 418 ~ 418 (462)
T 1ibr_B 418 K 418 (462)
T ss_dssp G
T ss_pred c
Confidence 4
No 26
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=64.04 E-value=29 Score=40.13 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=71.8
Q ss_pred hHHHHHHHhhhcCCCCCCCh-----hHHHHHHHHHHHHhcccCC-CCCcchhhHHHHHHHhhhhhhheeeccCC-chHHH
Q 004863 81 VTSCISEITRITAPDSPYDD-----ELMKEFFQLAVSAFENLSH-ASGRYYMKALSILDTVAKVRSCLLMLDLE-CDKLV 153 (726)
Q Consensus 81 VAcCLaDILRIyAPDAPYtD-----dqLKDIFqLfV~qf~~LsD-~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE-~ddLI 153 (726)
+=+||.-+|..|.+- |+. .+...+|+.++..|...== +-...|-|++. =.++.. +.+ ++.++
T Consensus 354 LD~im~llf~~~~~~--~~~~~l~~~~~~~lf~~Ll~~F~~~ILpT~~sr~vQFl~--Fy~cs~-------~~~~~~~Fl 422 (649)
T 3tj1_A 354 LDSILTLVSTHVEEQ--VTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIM--FHVSQQ-------QLELMDSFL 422 (649)
T ss_dssp HHHHHHHHHHHHHHH--SCHHHHHSSTHHHHHHHHHHHHHHTTTTSCSCSSTTHHH--HHHHTT-------SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--cCCCccccchHHHHHHHHHHHHHHhccccccCccHHHHH--HHHHhC-------CHHHHHHHH
Confidence 457788888777654 443 3456799999999985433 33445666532 222222 222 56667
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Q 004863 154 VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (726)
Q Consensus 154 ~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~l 202 (726)
..|++.+| .++.|..++..-..-|...|--+-.||.+++..+|..|
T Consensus 423 ~~L~~~~~---~~~~~~~~RqaAaaYLaSflARAk~v~~~~v~~vl~~L 468 (649)
T 3tj1_A 423 VTLIDISF---AVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYL 468 (649)
T ss_dssp HHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHBTTCCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777666 45677788888888888888888889888777776654
No 27
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=63.88 E-value=44 Score=38.32 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHH---HhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhhHH
Q 004863 151 KLVVEMFQHFLKVIRS-NHPHFVFAAMETIMTL---VIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA 226 (726)
Q Consensus 151 dLI~eLFktFFdiVr~-dhp~~V~~~M~dIMs~---VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~Cad 226 (726)
..+..||+.|..+-.. .|| .|......++.. .+.+....=..+|..|+..| . ......|...-..+|..|..
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~-~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~ 576 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNV-KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL 576 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCH-HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCccccCH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH
Confidence 5667777755444322 244 454444444443 33332233445666677666 2 44555566666689999999
Q ss_pred HHHHHHHHHHHhc
Q 004863 227 KLKTNLKEAVQSR 239 (726)
Q Consensus 227 KLqp~I~q~~ns~ 239 (726)
.|.||+.++++.+
T Consensus 577 ~l~p~~~~ll~~l 589 (971)
T 2x1g_F 577 QLKPYADPLLNAC 589 (971)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hccccHHHHHHHH
Confidence 9999988777644
No 28
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=63.72 E-value=14 Score=43.29 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=28.3
Q ss_pred hhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCC
Q 004863 56 ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAP 94 (726)
Q Consensus 56 SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAP 94 (726)
-|.+++..|+. .|.|.+..|+.++|.+|.-|.+-+..
T Consensus 537 ~l~~vl~~ll~--~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 537 FLRTVILKLFE--FMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHHHHHHHH--HTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665 47888999999999999888876543
No 29
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=63.07 E-value=1e+02 Score=36.21 Aligned_cols=116 Identities=6% Similarity=0.198 Sum_probs=75.4
Q ss_pred hhhhH-HHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC-c------
Q 004863 78 RLSVT-SCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE-C------ 149 (726)
Q Consensus 78 RayVA-cCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE-~------ 149 (726)
|+.+| .||+-|.|..+-..+|.. .+..|+.+ .++|+. ++++ .+..+.|.-++.|=++|.+.|+. .
T Consensus 399 rl~~aL~~l~~~~r~lv~~~~yr~-hl~~lL~l---~LpgID-~ND~--~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~ 471 (799)
T 1vsy_4 399 RIISSLKQFTRVIRFIVMDKLYRV-HITNVLSM---LVSKLD-MNDT--NLTSNLINGIVSIAAFIPIQDLTGEDDYISF 471 (799)
T ss_dssp HHHHHHHHHHTTHHHHTTSTTGGG-HHHHHHHH---HHHTCC-SSCH--HHHHHHHHHHHHHHHTSCBCCCCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHH---HhccCC-cccH--HHHHHHHHHHHHHHHhccccccCCcchhhhh
Confidence 44443 479999999998888854 44444444 344543 4444 67777777777777777777664 1
Q ss_pred ------------------------------------------hHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc
Q 004863 150 ------------------------------------------DKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES 187 (726)
Q Consensus 150 ------------------------------------------ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeES 187 (726)
.+++.++|.-+|..+..+.-..|...+...+..++.
T Consensus 472 ~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~-- 549 (799)
T 1vsy_4 472 ESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQE-- 549 (799)
T ss_dssp HHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHH--
T ss_pred hhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--
Confidence 167778888888887765556666554444444443
Q ss_pred CCCCHHHHHHHHHHhh
Q 004863 188 EDVSWDLLRILLASVR 203 (726)
Q Consensus 188 E~VP~eVLDvIL~~ll 203 (726)
.++.++.+.++..|.
T Consensus 550 -~lS~~if~~~l~k~~ 564 (799)
T 1vsy_4 550 -SMDDKIFNYFASLLN 564 (799)
T ss_dssp -TBCHHHHHHHHHHHH
T ss_pred -hCCHHHHHHHHHHHH
Confidence 567777777776654
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=61.60 E-value=98 Score=32.53 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=35.0
Q ss_pred hhccCCC-cCchhhhHHHHHHHhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCcchhhHHHHHHHhhh
Q 004863 68 DLLRRSD-MDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (726)
Q Consensus 68 ~LLkHKD-kdVRayVAcCLaDILRIyAPDAPYtDdqLKD-----IFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAe 137 (726)
.||.+.| ..||..++.||..|..- +.+.... +...++. .|.+++...-.+....|.+|+.
T Consensus 124 ~lL~~~~~~~v~~~A~~~L~~l~~~-------~~~~~~~~~~~g~i~~L~~---lL~~~~~~v~~~a~~aL~~l~~ 189 (528)
T 4b8j_A 124 QFLTREDFPQLQFEAAWALTNIASG-------TSENTKVVIDHGAVPIFVK---LLGSSSDDVREQAVWALGNVAG 189 (528)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHH---HTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCC-------CHHHHHHHHhCCcHHHHHH---HhcCCCHHHHHHHHHHHHHHhC
Confidence 3677776 89999999999998842 2233332 2333333 3344333334455667777753
No 31
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=58.25 E-value=23 Score=38.76 Aligned_cols=117 Identities=14% Similarity=0.191 Sum_probs=60.1
Q ss_pred hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccC
Q 004863 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDL 147 (726)
.+|+|.|..|+.-++.||..+..-. +-+.+.++.++.-++..|-.|.+ .++ .-++..|.+|..+-...
T Consensus 246 ~~l~~~~~~V~~ea~~~i~~l~~~~----~~~~~~~~~~~~~~~~~L~~L~~-~d~--~vr~~aL~~l~~i~~~~----- 313 (591)
T 2vgl_B 246 PRLSHANSAVVLSAVKVLMKFLELL----PKDSDYYNMLLKKLAPPLVTLLS-GEP--EVQYVALRNINLIVQKR----- 313 (591)
T ss_dssp TCSCSSTTHHHHHHHHHHHHSCCSC----CBTTBSHHHHHHHTHHHHHHHTT-SCH--HHHHHHHHHHHHHHHHC-----
T ss_pred HHHcCCChHHHHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHhc-CCc--cHHHHHHHHHHHHHHhC-----
Confidence 3689999999999999998886422 11224455555544444334443 222 44566777776653211
Q ss_pred CchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Q 004863 148 ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (726)
Q Consensus 148 E~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~l 202 (726)
+ +++......|| ...+.+..|...-.++|..+.++.. + ..++..|+..+
T Consensus 314 p--~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~n-v-~~iv~~L~~~l 362 (591)
T 2vgl_B 314 P--EILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQAN-I-AQVLAELKEYA 362 (591)
T ss_dssp C--STTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCSST-H-HHHHHHHHHHT
T ss_pred h--HHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCChhh-H-HHHHHHHHHHH
Confidence 0 01111112222 1123345566666666666665532 2 34455555444
No 32
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=58.15 E-value=2e+02 Score=32.65 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=76.2
Q ss_pred HHHHHHhhhcCCCCCCCh---hHHHHHHHHHHHHhcccCCC-CCc-chhhHHHHHHHhhhhhhheeeccCCchHHHHHHH
Q 004863 83 SCISEITRITAPDSPYDD---ELMKEFFQLAVSAFENLSHA-SGR-YYMKALSILDTVAKVRSCLLMLDLECDKLVVEMF 157 (726)
Q Consensus 83 cCLaDILRIyAPDAPYtD---dqLKDIFqLfV~qf~~LsD~-ssp-~Y~q~~yLLEsLAeVKS~VLmlDLE~ddLI~eLF 157 (726)
.++..|++.|+-+..|.+ .-|..+|..++..|. .+. +.| .-..+|.+|..+...-.-.++ .....+..+|
T Consensus 745 ~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~pd~~~~~f~ll~~~~~~~~~~~~---~~~~~~~~i~ 819 (963)
T 2x19_B 745 DLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFL---CERLDVKAVF 819 (963)
T ss_dssp HHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHH--HCTTTCHHHHHHHHHHHHHHHHHCGGGGG---CTTSCHHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh--hCcccCchHHHHHHHHHHHHHHhCcHHHc---CCcccHHHHH
Confidence 446777777776654443 223333444444443 122 123 346688899988865433322 1222266677
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhcccC----------CCCHHHHHHHHHHhhccCC-CCCchHHHHHHHHHhhhHH
Q 004863 158 QHFLKVIRSNHPHFVFAAMETIMTLVIDESE----------DVSWDLLRILLASVRKENQ-DVSPTSWKLGEKVFTKCAA 226 (726)
Q Consensus 158 ktFFdiVr~dhp~~V~~~M~dIMs~VIeESE----------~VP~eVLDvIL~~ll~~~k-s~~PaAykLA~~VI~~Cad 226 (726)
..+...++.. ...+......+|..+|.... ..-..++..||..+..... ........+...++..+..
T Consensus 820 ~~~~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~ 898 (963)
T 2x19_B 820 QCAVLALKFP-EAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFS 898 (963)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChH
Confidence 7777776633 34455555666777775432 2334566666666653222 1222222222344455555
Q ss_pred HHHHHHHHHH
Q 004863 227 KLKTNLKEAV 236 (726)
Q Consensus 227 KLqp~I~q~~ 236 (726)
.+..++.+++
T Consensus 899 ~~~~~l~~~l 908 (963)
T 2x19_B 899 LLSMWIKEAL 908 (963)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5565665555
No 33
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=57.85 E-value=71 Score=36.94 Aligned_cols=145 Identities=8% Similarity=0.063 Sum_probs=93.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhh-hhccCCCcCchhhhHH--HHHHHhhhcCCCCCCCh
Q 004863 24 PPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITN-DLLRRSDMDVRLSVTS--CISEITRITAPDSPYDD 100 (726)
Q Consensus 24 ~piStdELLKRLkkL~~eLs~lDQ~pvdS~~~SL~pl~k~LVs~-~LLkHKDkdVRayVAc--CLaDILRIyAPDAPYtD 100 (726)
.+++..+|...|+.|..+.+.+|.. +...+..+|++- ..+...+.-|++|+.- .|+=. ..
T Consensus 108 d~~~~~~L~~~L~aLs~~Vs~Ld~~-------~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa----------~~ 170 (649)
T 3tj1_A 108 ERINDKNLNILLDILSSNINRIESS-------RGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSS----------IP 170 (649)
T ss_dssp TSCCHHHHHHHHHHHHHTGGGGCSG-------GGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHH----------CG
T ss_pred CcCCHHHHHHHHHHHHhhhhhcCch-------hHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhc----------cH
Confidence 3578999999999999999988752 235677888888 8998888888888752 22210 13
Q ss_pred hHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCc------hhHHH
Q 004863 101 ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHP------HFVFA 174 (726)
Q Consensus 101 dqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp------~~V~~ 174 (726)
.-|..|+..+|..|..- .....+.+.+|..|..+ |-.-+..++.++...+| ..+..
T Consensus 171 ~yl~~vl~mLV~~F~~~----~~~~~~~H~~L~~Il~l--------------vP~s~~~L~~iL~~~FP~~~~s~~~~~~ 232 (649)
T 3tj1_A 171 KWWQDVSMILVSCFILP----IKQTVCHHDMLKYFLRM--------------IPSSMGFIDTYLAKFFPNKNDTRRKLVN 232 (649)
T ss_dssp GGHHHHHHHHHHGGGSC----HHHHHHHHHHHHHHHHH--------------CGGGHHHHHHHHHHTCCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCC----CcccHHHHHHHHHHHHH--------------cCCCHHHHHHHHHHhCCCCCCchhHHHH
Confidence 67899999999998631 11234456666665543 11122333333343333 33555
Q ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Q 004863 175 AMETIMTLVIDESEDVSWDLLRILLASVRK 204 (726)
Q Consensus 175 ~M~dIMs~VIeESE~VP~eVLDvIL~~ll~ 204 (726)
++.++|. |++=+..+-.++|.+|+..+++
T Consensus 233 Yv~NLLr-l~~Y~PeL~~~Il~LIierlik 261 (649)
T 3tj1_A 233 YTSNLLK-LRGYCSELGFQIWSLLIEKIIS 261 (649)
T ss_dssp HHHHHHH-HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhchHHHHHHHHHHHHHHHH
Confidence 6666654 4555667778888888877653
No 34
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=54.78 E-value=95 Score=30.45 Aligned_cols=143 Identities=10% Similarity=0.108 Sum_probs=80.8
Q ss_pred hccCCCcCchhhhHHHHHH-HhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheee-cc
Q 004863 69 LLRRSDMDVRLSVTSCISE-ITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLM-LD 146 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaD-ILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLm-lD 146 (726)
.|.+++-.-|.-+..+|.. ++.= .|+....+....+++..+...+. .|.+-..-...+..|..||+.= - -.
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~l----~~~~ 96 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDKL----KTPG 96 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHH----CTTT
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhc----cccc
Confidence 4567788888888888888 8742 34332212222355666655542 2333333345566666666320 1 11
Q ss_pred CCch-HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 004863 147 LECD-KLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVSWDLLRILLASVRKENQDVSPTSWKLGEKV 220 (726)
Q Consensus 147 LE~d-dLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE-----~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~V 220 (726)
+ . .....++-.+|+...+.. ..|...+..-|..+++..+ .-...+++.|+..|... +|.....+-..
T Consensus 97 f--~~~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k----~~~vk~~al~~ 169 (249)
T 2qk1_A 97 F--SKDYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK----TPQIRMECTQL 169 (249)
T ss_dssp S--CHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS----SHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC----ChHHHHHHHHH
Confidence 1 2 455666777777766544 4566666666666666553 11457888888776432 45555555556
Q ss_pred HhhhH
Q 004863 221 FTKCA 225 (726)
Q Consensus 221 I~~Ca 225 (726)
|..|.
T Consensus 170 l~~~~ 174 (249)
T 2qk1_A 170 FNASM 174 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 35
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=54.07 E-value=2.5e+02 Score=32.49 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=38.7
Q ss_pred CcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhh
Q 004863 74 DMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (726)
Q Consensus 74 DkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeV 138 (726)
.+-||.-++-||.-+--.+ ..+.+..||..++..| .|.+-+-.....+-|++|.+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~------~~~~l~~~l~~l~~~L---~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL------TKAQLIELMPILATFL---QTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS------CHHHHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHTTC
T ss_pred CceehHHHHHHHHHHHhhC------CHHHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHhc
Confidence 5567777776777554433 3567888888888865 455555677788888888765
No 36
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=52.36 E-value=1.2e+02 Score=29.64 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=64.0
Q ss_pred CCCCCh---hHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchh
Q 004863 95 DSPYDD---ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHF 171 (726)
Q Consensus 95 DAPYtD---dqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~ 171 (726)
-.|++| +.++++|.-.|.+++-= ...++.+|.||+=..|...-+ -|++ --.++|+.+.++ ...| .+
T Consensus 27 g~p~~d~~l~rlrd~YerAia~~Pp~---k~~~wrrYI~LWIrYA~~~ei---~D~d---~aR~vy~~a~~~-hKkF-AK 95 (161)
T 4h7y_A 27 SVPLSDALLNKLIGRYSQAIEALPPD---KYGQNESFARIQVRFAELKAI---QEPD---DARDYFQMARAN-CKKF-AF 95 (161)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHSCGG---GGTTCHHHHHHHHHHHHHHHH---HCGG---GCHHHHHHHHHH-CTTB-HH
T ss_pred CCCchhhHHHHHHHHHHHHHHcCCcc---ccccHHHHHHHHHHHHHHHHh---cCHH---HHHHHHHHHHHH-hHHH-HH
Confidence 457777 57778888777776532 377899999999999988543 6665 235666666553 3333 22
Q ss_pred HH-------------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhccC
Q 004863 172 VF-------------AAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206 (726)
Q Consensus 172 V~-------------~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ 206 (726)
|. ..-..||..-|. ....|.++|...|.++..+.
T Consensus 96 iwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 96 VHISFAQFELSQGNVKKSKQLLQKAVE-RGAVPLEMLEIALRNLNLQK 142 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCcHHHHHHHHHhhhcCC
Confidence 21 112356666666 34678888888888776544
No 37
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=52.00 E-value=76 Score=35.44 Aligned_cols=136 Identities=11% Similarity=0.075 Sum_probs=75.0
Q ss_pred hccCCCc--CchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeecc
Q 004863 69 LLRRSDM--DVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (726)
Q Consensus 69 LLkHKDk--dVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlD 146 (726)
.|+|.+. .|-.-++.||..+- | ..+.+..++..+..-+ . ++...-+|..|.+|..+-..-
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l~----~----~~~~~~~~~~~L~~~L---~---~~~~niry~aL~~l~~l~~~~---- 360 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHHD----S----EPNLLVRACNQLGQFL---Q---HRETNLRYLALESMCTLASSE---- 360 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHHHS---S---CSCHHHHHHHHHHHHHHTTCT----
T ss_pred cccccchHHHHHHHHHHHHHhcC----C----cHHHHHHHHHHHHHHh---c---CCCcchHHHHHHHHHHHHhcc----
Confidence 5677766 66666666666652 2 2233343444333322 2 222244566777777663211
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhhHH
Q 004863 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA 226 (726)
Q Consensus 147 LE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~Cad 226 (726)
+..+++...+..||..++.+.+..|...-.+||..++.+.. =..|+..|+.++...+. .....+. .-|..|+.
T Consensus 361 -~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N--v~~Iv~eL~~yl~~~d~---~~~~~~v-~~I~~la~ 433 (621)
T 2vgl_A 361 -FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN--AQQIVAEMLSYLETADY---SIREEIV-LKVAILAE 433 (621)
T ss_dssp -TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHCCH---HHHHHHH-HHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh--HHHHHHHHHHHHHhcCH---HHHHHHH-HHHHHHHH
Confidence 12356677778888877745556788888899999988742 24556666666554321 1122233 33556666
Q ss_pred HHH
Q 004863 227 KLK 229 (726)
Q Consensus 227 KLq 229 (726)
++.
T Consensus 434 k~~ 436 (621)
T 2vgl_A 434 KYA 436 (621)
T ss_dssp HHC
T ss_pred hcC
Confidence 653
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=51.25 E-value=2.5e+02 Score=29.91 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=38.8
Q ss_pred hccCC-CcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHH-HHHH-hcccCCCCCcchhhHHHHHHHhhh
Q 004863 69 LLRRS-DMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQL-AVSA-FENLSHASGRYYMKALSILDTVAK 137 (726)
Q Consensus 69 LLkHK-DkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqL-fV~q-f~~LsD~ssp~Y~q~~yLLEsLAe 137 (726)
||.+. +..||..+|.||..|..- ++++-+.|... .|.. +..|.+++...-.+....|.+||.
T Consensus 108 lL~~~~~~~lq~~Aa~aL~nias~-------~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 108 FLGKTDCSPIQFESAWALTNIASG-------TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 56554 478999999999998743 45666666542 2222 233444444455666777777763
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.10 E-value=1.4e+02 Score=27.05 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=33.2
Q ss_pred hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhh
Q 004863 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVR 139 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVK 139 (726)
.+|.+.|..||..++.+|..+-. . +++..++..| .| +...-+...+..|+.+.
T Consensus 57 ~~l~~~~~~vr~~a~~aL~~~~~---------~----~~~~~L~~~l---~~---~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 57 KALKDEDAWVRRAAADALGQIGD---------E----RAVEPLIKAL---KD---EDGWVRQSAAVALGQIG 109 (211)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCC---------G----GGHHHHHHHT---TC---SSHHHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHHHhhCC---------H----HHHHHHHHHH---cC---CCHHHHHHHHHHHHHhC
Confidence 36678899999999999988731 1 2334444443 33 33455667777776653
No 40
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.26 E-value=30 Score=35.39 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=36.7
Q ss_pred HHhhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCCCCCCCh
Q 004863 54 RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD 100 (726)
Q Consensus 54 ~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtD 100 (726)
-.....++.+|+...|=.|....=.+++++||+=|..=--+|+-|+.
T Consensus 35 Frq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~ 81 (235)
T 3bu8_A 35 FRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDM 81 (235)
T ss_dssp HHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSS
T ss_pred HHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCC
Confidence 34567888999988887777666788999998777777778888875
No 41
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=49.67 E-value=1.3e+02 Score=31.84 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=34.8
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHH-HHHHH-hcccCCCCCcchhhHHHHHHHhhh
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQ-LAVSA-FENLSHASGRYYMKALSILDTVAK 137 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFq-LfV~q-f~~LsD~ssp~Y~q~~yLLEsLAe 137 (726)
+|.|.+..||..++.||..|..- ++.+...++. -++.. +..|.+.+...-......|-+|+.
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVTG-------NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCChhhHHHHHHHHHHHHcC-------CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 67889999999999999988742 2333333332 12222 223344432233345566666653
No 42
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=49.56 E-value=18 Score=39.65 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=22.3
Q ss_pred HHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcC
Q 004863 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA 93 (726)
Q Consensus 59 pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyA 93 (726)
.++..|. .++.+.|.++|.-++-+|..+..-|+
T Consensus 353 ~iv~~L~--~~l~~~d~~~r~~~v~aI~~la~~~~ 385 (591)
T 2vgl_B 353 QVLAELK--EYATEVDVDFVRKAVRAIGRCAIKVE 385 (591)
T ss_dssp HHHHHHH--HHTTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhCh
Confidence 3444444 46677788888888888877776654
No 43
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=49.43 E-value=2.5e+02 Score=29.39 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=22.2
Q ss_pred HHHhhhhhhhccCCCcCchhhhHHHHHHHhh
Q 004863 60 TMKGLITNDLLRRSDMDVRLSVTSCISEITR 90 (726)
Q Consensus 60 l~k~LVs~~LLkHKDkdVRayVAcCLaDILR 90 (726)
+...|+ .||.|.|.+|+..++.||..|..
T Consensus 245 ~l~~L~--~lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 245 ALPALA--RLIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HHHHHH--HHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHH--HHHCCCCHHHHHHHHHHHHHHHc
Confidence 334444 36789999999999999998874
No 44
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=47.56 E-value=93 Score=35.06 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=44.9
Q ss_pred cCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhccc-------CCCCCc---chhhHHHHHHHhhhhh
Q 004863 71 RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL-------SHASGR---YYMKALSILDTVAKVR 139 (726)
Q Consensus 71 kHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~L-------sD~ssp---~Y~q~~yLLEsLAeVK 139 (726)
.+.|.++.-.+..|+--|+|+..+..|...++...+++++-...... .+++.+ .+.+++-+|.+||...
T Consensus 492 ~~~d~~l~~~~~s~lwa~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lrv~~ig~Lg~LA~~~ 570 (684)
T 4gmo_A 492 DSADLKLATQVTSLAWAVARVLHGETPTDGNPHRKFISLYHSSKQQAGGNSNSIEEPEDPFQGLGVKCIGVVGSLAHDP 570 (684)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHGGGSCCTTCHHHHHHHHHHHHTTC-------------CTTSHHHHHHHHHHHHTSTT
T ss_pred ccccHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHHHHHHHhcCCC
Confidence 35666666666778999999999998888777777777765544321 223333 3456788888887653
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=46.34 E-value=76 Score=32.34 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=38.1
Q ss_pred hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHH------HHHHHHHHHhcccCCCCCcchhhHHHHHHHhhh
Q 004863 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMK------EFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLK------DIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAe 137 (726)
.||.|.+.+||.++|-||..|..- ++..+ ..+..++..|.. +++...-...++.|-+|+.
T Consensus 89 ~lL~s~~~~vr~~Aa~~Lg~ia~~--------n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 89 RYLEAGAAGLRWRAAQLIGTCSQN--------VAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVR 154 (296)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTT--------CHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhC--------CHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHc
Confidence 578999999999999999998842 22222 244455555432 2232344556777777753
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=43.31 E-value=93 Score=28.86 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.2
Q ss_pred hhccCCCcCchhhhHHHHHHHh
Q 004863 68 DLLRRSDMDVRLSVTSCISEIT 89 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDIL 89 (726)
.+|.+.|..||..++.||..|.
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 103 QLLSSPNEQILQEALWALSNIA 124 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHhh
Confidence 5678889999999999999985
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=42.57 E-value=3.4e+02 Score=28.93 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhcc-CCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHH
Q 004863 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLR-RSDMDVRLSVTSCISEITRITAPDSPYDDELMKEF 106 (726)
Q Consensus 28 tdELLKRLkkL~~eLs~lDQ~pvdS~~~SL~pl~k~LVs~~LLk-HKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDI 106 (726)
.+.++.-++.+...|+.-...+.+.+.+ ..+.-.||+ ||. +.+..++..+|.||..|..- ++++.+.|
T Consensus 90 ~~~q~~a~~~~rklLs~~~~~~i~~ii~--~G~ip~Lv~--lL~~~~~~~~q~~Aa~aL~nia~~-------~~~~~~~v 158 (529)
T 3tpo_A 90 LESQLQATQAARKLLSREKQPPIDNIIR--AGLIPKFVS--FLGKTDCSPIQFESAWALTNIASG-------TSEQTKAV 158 (529)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCCHHHHHH--TTHHHHHHH--HHTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHH--CCCHHHHHH--HHcCCCCHHHHHHHHHHHHHHHcC-------CHHHHHHH
Confidence 4455555666666665444334442222 123333443 554 45588999999999999753 44555555
Q ss_pred HHH-HHHHh-cccCCCCCcchhhHHHHHHHhhh
Q 004863 107 FQL-AVSAF-ENLSHASGRYYMKALSILDTVAK 137 (726)
Q Consensus 107 FqL-fV~qf-~~LsD~ssp~Y~q~~yLLEsLAe 137 (726)
+.. .|..| ..|.+++.....+....|.+||.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 442 23332 23444444455667777888764
No 48
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=42.06 E-value=1.2e+02 Score=27.24 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=35.7
Q ss_pred hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCcchhhHHHHHHHhh
Q 004863 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVA 136 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKD-----IFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLA 136 (726)
.||+|.|.+||..++.||..|.+- +++.... ++..++..| .+.+...-......|-+|+
T Consensus 19 ~LL~s~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 19 QQLNSPDQQELQSALRKLSQIASG-------GNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIA 82 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcC-------CHHHHHHHHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHHh
Confidence 578899999999999999998742 2222222 334444443 4443333444566666665
No 49
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=40.76 E-value=60 Score=34.35 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=39.3
Q ss_pred hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhh
Q 004863 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAe 137 (726)
.||.+.+..|+..++.||+.|.+-..|..+ ......++..++..+. +.+...-......|.+|+.
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPD--WSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCC--HHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHS
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCc--HHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhC
Confidence 356678899999999999999985434432 3344556666666553 3332223334555555553
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=40.45 E-value=84 Score=33.62 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.0
Q ss_pred hhccCCCcCchhhhHHHHHHHhh
Q 004863 68 DLLRRSDMDVRLSVTSCISEITR 90 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILR 90 (726)
.||.|.+..||..+|.||+.|..
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHc
Confidence 57899999999999999999874
No 51
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=38.15 E-value=84 Score=36.80 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=29.6
Q ss_pred CcCchhhhHHHHHHHhhhcCCCCCCC---hhHHHHHHHHHHHHhcc
Q 004863 74 DMDVRLSVTSCISEITRITAPDSPYD---DELMKEFFQLAVSAFEN 116 (726)
Q Consensus 74 DkdVRayVAcCLaDILRIyAPDAPYt---DdqLKDIFqLfV~qf~~ 116 (726)
+.++|..+.-||++|+....| |++ +..+..+|..++.++..
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~--~~~~~~~~~~~~l~~~~l~~l~~ 290 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIAT 290 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988544 332 24667777777775543
No 52
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=38.14 E-value=1.8e+02 Score=29.14 Aligned_cols=119 Identities=11% Similarity=0.117 Sum_probs=62.8
Q ss_pred hhccCC-CcCchhhhHHHHHHHhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhh
Q 004863 68 DLLRRS-DMDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSC 141 (726)
Q Consensus 68 ~LLkHK-DkdVRayVAcCLaDILRIyAPDAPYtDdqLKD-----IFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~ 141 (726)
.+|.+. |..||..++-||..|..- +.+..+. +...++.. |.+.+...-.+....|.+|+....-
T Consensus 71 ~~L~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~~l---L~~~~~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 71 EFLKRKENCTLQFESAWVLTNIASG-------NSLQTRIVIQAGAVPIFIEL---LSSEFEDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHSS-------CHHHHHHHHHTTHHHHHHHH---TTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHhCCCHHHHHHH---HcCCCHHHHHHHHHHHHHHccCCHH
Confidence 356777 899999999999999852 2333333 33334433 3343322334456667776653110
Q ss_pred eeeccCCchHHHH--HHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc-CC----CCHHHHHHHHHHhh
Q 004863 142 LLMLDLECDKLVV--EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES-ED----VSWDLLRILLASVR 203 (726)
Q Consensus 142 VLmlDLE~ddLI~--eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeES-E~----VP~eVLDvIL~~ll 203 (726)
.-+.+. .++..+...+..+....|.......|..+.... .. +-..++..|+.-+.
T Consensus 141 -------~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 202 (450)
T 2jdq_A 141 -------CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202 (450)
T ss_dssp -------HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT
T ss_pred -------HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 011111 234445555554445666666666666666433 11 12456666665554
No 53
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=35.55 E-value=23 Score=30.30 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=24.1
Q ss_pred HHHHhhhcCC-CCCCCh---hHHHHHHHHHHHH
Q 004863 85 ISEITRITAP-DSPYDD---ELMKEFFQLAVSA 113 (726)
Q Consensus 85 LaDILRIyAP-DAPYtD---dqLKDIFqLfV~q 113 (726)
|..+||+|+| ++||+. +||+....-.|+.
T Consensus 28 Ih~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e 60 (74)
T 1ldd_A 28 IHSFLKITVPKDWGYNRITLQQLEGYLNTLADE 60 (74)
T ss_dssp HHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 6789999999 578976 9999988877765
No 54
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=35.23 E-value=98 Score=31.13 Aligned_cols=124 Identities=8% Similarity=0.108 Sum_probs=61.1
Q ss_pred hccC-CCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccC
Q 004863 69 LLRR-SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (726)
Q Consensus 69 LLkH-KDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDL 147 (726)
+|.+ .+..||..++.||..|.+-..|...+ ..+..++..++..+. +.+..........|.+|+....-.
T Consensus 157 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~----- 226 (450)
T 2jdq_A 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEF--AKVSPCLNVLSWLLF---VSDTDVLADACWALSYLSDGPNDK----- 226 (450)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG--GGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSSHHH-----
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHCCCcHH-----
Confidence 4453 68899999999999999864454432 223455555555543 333222333445555554321000
Q ss_pred CchHHH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHhhc
Q 004863 148 ECDKLV-VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRK 204 (726)
Q Consensus 148 E~ddLI-~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~-----VP~eVLDvIL~~ll~ 204 (726)
...++ ..++..++..+.. ....|......+|..+....+. +...++..|+.-+..
T Consensus 227 -~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 227 -IQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp -HHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred -HHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 00111 1234444454442 2345555555555555543321 222456666555443
No 55
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=34.42 E-value=3.9e+02 Score=27.29 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=38.4
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHH---HHHHHHhhccCCCCCchHHHHHHHHHhhhHHHHHH
Q 004863 156 MFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLL---RILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKT 230 (726)
Q Consensus 156 LFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVL---DvIL~~ll~~~ks~~PaAykLA~~VI~~CadKLqp 230 (726)
+|..+.+.+...++ .+..-..+.|..+|+....-|...+ ..|...|-..+.+..-+|-+.-..+....++++-.
T Consensus 168 v~~~l~~g~ksKN~-R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 168 MTPMLLDALKSKNA-RQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp HHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHccCCH-HHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555555553 4444455667778888765555555 44555554444434334444444444444555433
No 56
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=34.26 E-value=1.4e+02 Score=31.82 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcccCCch-hhHHhhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhh
Q 004863 34 LLDKVEHLLANVEQAPSR-SMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITR 90 (726)
Q Consensus 34 RLkkL~~eLs~lDQ~pvd-S~~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILR 90 (726)
.++.+...|+.+-.+... ........+...|+ .||.|.|.+|+..++.||+.+..
T Consensus 225 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~--~LL~~~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 225 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV--RLLHHNDPEVLADSCWAISYLTD 280 (529)
T ss_dssp HHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHH--HHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHhhHHHHHH--HHhcCCcHHHHHHHHHHHHHhhh
Confidence 345556666666443221 01222334444455 47899999999999999998884
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=33.95 E-value=2.2e+02 Score=31.78 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=61.6
Q ss_pred hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhc-ccCCCCCcchhhHHHHHHHhhhhhhheeeccC
Q 004863 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE-NLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~-~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDL 147 (726)
++.++|..+|-++-.++..++. .. . |+..+++.+|. .|.|+ ++ .-+-.-|.+|+.++.
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~----~~---~----e~~~L~iN~l~kDl~~~-n~--~ir~lALr~L~~i~~------- 140 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVN----SN---S----ELIRLINNAIKNDLASR-NP--TFMGLALHCIANVGS------- 140 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCC----CC---H----HHHHHHHHHHHHHHHSC-CH--HHHHHHHHHHHHHCC-------
T ss_pred HhcCCCHHHHHHHHHHHHHHcc----CC---c----HHHHHHHHHHHHhcCCC-CH--HHHHHHHHHhhccCC-------
Confidence 6677888888777777666552 21 2 44567777765 55543 33 336677888887754
Q ss_pred CchHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhcccC-CCCH-HHHHHHHHHh
Q 004863 148 ECDKLVVEMFQHFLKVIR-SNHPHFVFAAMETIMTLVIDESE-DVSW-DLLRILLASV 202 (726)
Q Consensus 148 E~ddLI~eLFktFFdiVr-~dhp~~V~~~M~dIMs~VIeESE-~VP~-eVLDvIL~~l 202 (726)
.+++..+...++..+. .+...-|+....--+..+..-.. .++. .+++.|..-|
T Consensus 141 --~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL 196 (621)
T 2vgl_A 141 --REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLL 196 (621)
T ss_dssp --HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHh
Confidence 4466666666666552 23344555544433333443332 2332 4555555444
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=32.11 E-value=2.1e+02 Score=25.64 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=54.6
Q ss_pred hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHH-HHHH-hcccCCCCCcchhhHHHHHHHhhhhhhheeec
Q 004863 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQL-AVSA-FENLSHASGRYYMKALSILDTVAKVRSCLLML 145 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqL-fV~q-f~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLml 145 (726)
.+|.+.|..||..++.||..|..- +++....|+.. .+.. +..|.+.+...-......|.+|+.-..-.
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--- 130 (210)
T 4db6_A 61 QLLSSPNEQILQEALWALSNIASG-------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--- 130 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH---
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcC-------CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHH---
Confidence 567788999999999999998741 22333333321 1222 23344443333445566777766321000
Q ss_pred cCCchHHH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 004863 146 DLECDKLV-VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (726)
Q Consensus 146 DLE~ddLI-~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeE 186 (726)
...++ ..++..++..++.. ...|......+|..+...
T Consensus 131 ---~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 131 ---IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG 168 (210)
T ss_dssp ---HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS
T ss_pred ---HHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 01111 12445555555544 345666666666666654
No 59
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=28.18 E-value=2.8e+02 Score=25.18 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=39.3
Q ss_pred HHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHH-----HHHHHHHHHhcccCCCCCcchhhHHHHHHH
Q 004863 60 TMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMK-----EFFQLAVSAFENLSHASGRYYMKALSILDT 134 (726)
Q Consensus 60 l~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLK-----DIFqLfV~qf~~LsD~ssp~Y~q~~yLLEs 134 (726)
+...|+ .+|.+.|.+||..++.||..|..- .++... .++..++..| .+.+...-.....+|.+
T Consensus 45 ~i~~L~--~ll~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~l~~ll---~~~~~~v~~~a~~~L~~ 112 (252)
T 4hxt_A 45 GVEVLV--KLLTSTDSEVQKEAARALANIASG-------PDEAIKAIVDAGGVEVLVKLL---TSTDSEVQKEAARALAN 112 (252)
T ss_dssp HHHHHH--HHTTCSCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTHHHHHHHHT---TCSSHHHHHHHHHHHHH
T ss_pred CHHHHH--HHHhCCCHHHHHHHHHHHHHHHcC-------ChHHHHHHHHCCCHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 334444 577888999999999999988642 122222 2344444444 34443445556777777
Q ss_pred hhh
Q 004863 135 VAK 137 (726)
Q Consensus 135 LAe 137 (726)
|+.
T Consensus 113 l~~ 115 (252)
T 4hxt_A 113 IAS 115 (252)
T ss_dssp HTT
T ss_pred HHc
Confidence 763
No 60
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=27.97 E-value=2e+02 Score=33.85 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHHHhc
Q 004863 99 DDELMKEFFQLAVSAFE 115 (726)
Q Consensus 99 tDdqLKDIFqLfV~qf~ 115 (726)
|++|+.-||.-+++.|.
T Consensus 226 t~~q~~~iFt~~lr~l~ 242 (799)
T 1vsy_4 226 TDDQMTFMFNRLQGHLR 242 (799)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 78999999999999998
No 61
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=25.22 E-value=52 Score=31.18 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=36.7
Q ss_pred HHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhhHHHHHHHHH
Q 004863 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLK 233 (726)
Q Consensus 182 ~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~CadKLqp~I~ 233 (726)
.+|.....-|.+.+..|...|...+....-.|..|...++.||+..+...|+
T Consensus 41 D~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~eva 92 (163)
T 1x5b_A 41 DKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVC 92 (163)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHT
T ss_pred HHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3444445678888888888887655555556777778888888888875554
No 62
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.18 E-value=4.4e+02 Score=24.92 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=15.0
Q ss_pred hccCCCcCchhhhHHHHHHHh
Q 004863 69 LLRRSDMDVRLSVTSCISEIT 89 (726)
Q Consensus 69 LLkHKDkdVRayVAcCLaDIL 89 (726)
+|.+.|..||..++-+|..+-
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~ 51 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRG 51 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHccC
Confidence 566777778877777777653
No 63
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=24.82 E-value=4e+02 Score=31.92 Aligned_cols=103 Identities=12% Similarity=0.151 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCc------CchhhhHHHHHHHhhhcCCCCCCChh
Q 004863 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDM------DVRLSVTSCISEITRITAPDSPYDDE 101 (726)
Q Consensus 28 tdELLKRLkkL~~eLs~lDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDk------dVRayVAcCLaDILRIyAPDAPYtDd 101 (726)
..+.|..+-.|.++|...-.+...-|.+++-..--.+++..|=.|+|- =.++++.+|..-+|.+ ..+
T Consensus 773 ~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~-------~~~ 845 (1023)
T 4hat_C 773 DAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLEL-------PPA 845 (1023)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTS-------CHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcC-------CHH
Confidence 367777787888877654332233455555555556677777777763 2455666777777754 466
Q ss_pred HHHHHHHHHHHHhccc-CCCCCcchhhHHHHHHHhhh
Q 004863 102 LMKEFFQLAVSAFENL-SHASGRYYMKALSILDTVAK 137 (726)
Q Consensus 102 qLKDIFqLfV~qf~~L-sD~ssp~Y~q~~yLLEsLAe 137 (726)
+++.||.-++-.|++= .|.......=-+.||++++.
T Consensus 846 ~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~ 882 (1023)
T 4hat_C 846 AFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER 882 (1023)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 7777777777666631 12233334445666666664
No 64
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=24.62 E-value=2.5e+02 Score=31.63 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=56.7
Q ss_pred HhhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHH---HHHHHhc-ccCCCCCcchhhHHH
Q 004863 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQ---LAVSAFE-NLSHASGRYYMKALS 130 (726)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFq---LfV~qf~-~LsD~ssp~Y~q~~y 130 (726)
..+.|+.. .|++.|..+|..+|.+|++|. .+..++..|. .+...+. .|.|++..--...+.
T Consensus 34 ~~i~Pll~------~L~S~~~~~r~~A~~al~~l~---------~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~g 98 (684)
T 4gmo_A 34 DKILPVLK------DLKSPDAKSRTTAAGAIANIV---------QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWE 98 (684)
T ss_dssp HTTHHHHH------HHSSSCCSHHHHHHHHHHHHT---------TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHH
T ss_pred hhHHHHHH------HcCCCCHHHHHHHHHHHHHHH---------cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566543 268999999999999999996 2333433333 3334444 378887777777888
Q ss_pred HHHHhhhh---hhheeeccCCchHHHHHHHHHHHH
Q 004863 131 ILDTVAKV---RSCLLMLDLECDKLVVEMFQHFLK 162 (726)
Q Consensus 131 LLEsLAeV---KS~VLmlDLE~ddLI~eLFktFFd 162 (726)
.|.+|+.. ..|.-|...+--.-+..+|+.+..
T Consensus 99 aLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~ 133 (684)
T 4gmo_A 99 ILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLE 133 (684)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHH
Confidence 88888743 444444444422334444444333
No 65
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=24.33 E-value=2.8e+02 Score=34.77 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=74.6
Q ss_pred HHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHH
Q 004863 82 TSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFL 161 (726)
Q Consensus 82 AcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE~ddLI~eLFktFF 161 (726)
..+|+++|| |-|.+.+++..|..=|++.|..|.-.+=|.+-.+.-+|-+-..-+.+ | .=|..+|..++
T Consensus 174 li~l~~mFr----Dv~Ls~eel~~VV~Kv~~~l~~l~l~ElPpLvyQLLlLs~kg~k~~I-L-------~gl~~yF~~~~ 241 (1308)
T 3s51_A 174 MIQLTSVFK----DVCLTPEEMNLVVAKVLTMFSKLNLQEIPPLVYQLLVLSSKGSRRSV-L-------DGIIAFFRELD 241 (1308)
T ss_dssp HHHHHHHGG----GSCCCHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHTTSCHHHH-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCCHHHHHHHHHHHHHhhhcCChhhchHHHHHHHHHhcccchHHH-H-------HHHHHHHHHhh
Confidence 445666666 67999999999999999999999988888888777777665543332 2 13455665554
Q ss_pred HHhh-----------cCCc-hhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccC
Q 004863 162 KVIR-----------SNHP-HFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206 (726)
Q Consensus 162 diVr-----------~dhp-~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ 206 (726)
...+ ..+| ..++..-.+||-.|-- +-...+++...+|..|....
T Consensus 242 ~~~~~~~~~~~~~d~~~~s~~elr~vEgTVL~HI~~-Aik~D~~Lgre~LK~~K~~~ 297 (1308)
T 3s51_A 242 KQHREEQSSDELSELITAPADELYHVEGTVILHIVF-AIKLDCELGRELLKHLKAGQ 297 (1308)
T ss_dssp HHHHHHHCC-------CCSHHHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHCCSS
T ss_pred hhcchhccCCcccccccCCHHHHHHHHHHHHHHHHH-HHHcCHHHHHHHHHHHhhhc
Confidence 3221 1244 4444444566655533 23678889999999887654
No 66
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=24.02 E-value=2.3e+02 Score=34.18 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHH---HHhcccCCCCHHHHHHHHHHhhccC------------CCCCchHHH
Q 004863 151 KLVVEMFQHFLKVIRSNHPHFVFAAMETIMT---LVIDESEDVSWDLLRILLASVRKEN------------QDVSPTSWK 215 (726)
Q Consensus 151 dLI~eLFktFFdiVr~dhp~~V~~~M~dIMs---~VIeESE~VP~eVLDvIL~~ll~~~------------ks~~PaAyk 215 (726)
.++..||+.++.+ ...+|. +......++. ..+......=..||..||..|.... +.....|..
T Consensus 529 ~~~~~Ll~~ll~~-~~~~p~-l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~ 606 (1204)
T 3a6p_A 529 NDGIELLQMVLNF-DTKDPL-ILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACS 606 (1204)
T ss_dssp HHHHHHHHHHHHC-CCSCHH-HHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCChH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHH
Confidence 5677777775543 345665 4443444333 3333222222334555554443210 111223333
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 004863 216 LGEKVFTKCAAKLKTNLKEAVQ 237 (726)
Q Consensus 216 LA~~VI~~CadKLqp~I~q~~n 237 (726)
.-..+|..|.+.|.||+.++++
T Consensus 607 al~~L~~~~~~~L~p~~~~i~~ 628 (1204)
T 3a6p_A 607 SIIKMCRDYPQLVLPNFDMLYN 628 (1204)
T ss_dssp HHHHHHHHCHHHHGGGHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3347899999999888887665
No 67
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=23.20 E-value=1.6e+02 Score=29.66 Aligned_cols=21 Identities=5% Similarity=-0.009 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 004863 28 VDEVINLLDKVEHLLANVEQA 48 (726)
Q Consensus 28 tdELLKRLkkL~~eLs~lDQ~ 48 (726)
..+++..+..+...|..+.=+
T Consensus 156 ~~~~~~~l~~~~~~~~~L~ld 176 (273)
T 3vi8_A 156 FCDIMEPKFDFAMKFNALELD 176 (273)
T ss_dssp THHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 345566666666666655443
No 68
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=23.03 E-value=1e+03 Score=28.43 Aligned_cols=106 Identities=10% Similarity=0.103 Sum_probs=55.2
Q ss_pred hHHHHHHHHHH----HHHhhc---CCchhHH---HHHHHHHHHHhcccCCCCHHHHHHHHH----HhhccCCCCCchHHH
Q 004863 150 DKLVVEMFQHF----LKVIRS---NHPHFVF---AAMETIMTLVIDESEDVSWDLLRILLA----SVRKENQDVSPTSWK 215 (726)
Q Consensus 150 ddLI~eLFktF----FdiVr~---dhp~~V~---~~M~dIMs~VIeESE~VP~eVLDvIL~----~ll~~~ks~~PaAyk 215 (726)
.+.+..||+.+ |+.|.. +||.-+. ..+..|...+..-.=.+|.+.+..++. .|.-..++.+-.+.+
T Consensus 792 ~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~ 871 (1023)
T 4hat_C 792 PQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQ 871 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 34444555555 455655 4565433 333444433333223478665555544 454444555555666
Q ss_pred HHHHHHhhhHHHH-HHHHHHHHHhcCCCchhHHHHHHHHhcCCCCCC
Q 004863 216 LGEKVFTKCAAKL-KTNLKEAVQSRGIALDDYAEIVACICGSDDENP 261 (726)
Q Consensus 216 LA~~VI~~CadKL-qp~I~q~~ns~G~~L~~YseIv~sIcq~~s~~~ 261 (726)
+..+++.++...- ..+..+|++ .+|-.|+-.||..-+|+.
T Consensus 872 ~~~~ll~~~~~~~~~~~~~~f~~------~~~~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 872 IALDLVKNIERMGNVPFANEFHK------NYFFIFVSETFFVLTDSD 912 (1023)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHH------HHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhcCChHHHHHHHH------HHHHHHHHHHHHHHhCch
Confidence 6677777766421 124445554 356666666666666555
No 69
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.35 E-value=1.8e+02 Score=30.87 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCchhhhHHHHHHH
Q 004863 9 ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88 (726)
Q Consensus 9 ele~~l~~~G~kLis~piStdELLKRLkkL~~eLs~lDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDI 88 (726)
.+++.+.+-|-..+.+ |.+|...|..+=++... .+.+-...++-+.+..+.+.+- ||++..|.+--|
T Consensus 181 ~~~e~~~~~~L~~l~~----------~~~l~~~L~~~l~~~~~--~~~i~~wik~n~~~~~~~~~~f-ir~L~t~v~~~~ 247 (364)
T 3l6a_A 181 RMLEILEGKGLSFLFP----------LLKLEKELLKQIKLDPS--PQTIYKWIKDNISPKLHVDKGF-VNILMTSFLQYI 247 (364)
T ss_dssp HHHHHHHHHTCGGGCH----------HHHHHHHHHHHHHHCCC--HHHHHHHHHHHSCHHHHTCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCC----------HHHHHHHHHHHHHcCCC--hHHHHHHHHHhCCcccCCCHHH-HHHHHHHHHHHH
Confidence 4555666655543321 23444444444333222 3344555666677666655554 777766666666
Q ss_pred hhhcCC
Q 004863 89 TRITAP 94 (726)
Q Consensus 89 LRIyAP 94 (726)
.+-..|
T Consensus 248 ~~~~~~ 253 (364)
T 3l6a_A 248 SSEVNP 253 (364)
T ss_dssp HHHHC-
T ss_pred HHhccc
Confidence 555444
No 70
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=21.90 E-value=2.1e+02 Score=26.84 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=13.3
Q ss_pred CCCcCchhhhHHHHHHH
Q 004863 72 RSDMDVRLSVTSCISEI 88 (726)
Q Consensus 72 HKDkdVRayVAcCLaDI 88 (726)
+++.+|+..+..||++.
T Consensus 34 ~s~~ev~~al~~avl~~ 50 (168)
T 3d3m_A 34 HVDKGFVNILMTSFLQY 50 (168)
T ss_dssp GGCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 48888988888887754
No 71
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.89 E-value=1.1e+02 Score=28.44 Aligned_cols=69 Identities=7% Similarity=0.161 Sum_probs=45.7
Q ss_pred HhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhhHHHHHHHH
Q 004863 163 VIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232 (726)
Q Consensus 163 iVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~CadKLqp~I 232 (726)
+.++.++..=...+.+|.- +|.....-|.+.+..|-..|...+....-.|..|...++.||+..+...|
T Consensus 9 ATs~~l~~~dw~~~leicD-~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 9 ATDPSMSEQDWSAIQNFCE-QVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHCTTCSSCCHHHHHHHHH-HHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HcCCCCCCcCHHHHHHHHH-HHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 3444444333344445444 34444467889999999998766666666677788888999998886655
No 72
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=21.55 E-value=4.5e+02 Score=23.74 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.2
Q ss_pred hhccCCCcCchhhhHHHHHHHhhh
Q 004863 68 DLLRRSDMDVRLSVTSCISEITRI 91 (726)
Q Consensus 68 ~LLkHKDkdVRayVAcCLaDILRI 91 (726)
.+|.+.|.+||..++-||..|.+-
T Consensus 9 ~~L~~~~~~~~~~a~~~L~~l~~~ 32 (252)
T 4hxt_A 9 KLLTSTDSETQKEAARDLAEIASG 32 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcC
Confidence 456778889999999888888754
No 73
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.43 E-value=90 Score=29.72 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhh----HHHHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCCCCCCC
Q 004863 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKC----AAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHG 264 (726)
Q Consensus 189 ~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~C----adKLqp~I~q~~ns~G~~L~~YseIv~sIcq~~s~~~~~~ 264 (726)
.|+.++++..|..+-.. ...-.|..++++.+... ..+...-+.+||.+-|.+.+.-..+|..+-....+-++|+
T Consensus 97 GI~~~~I~~al~~~~~~--de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~~~~~~~ 174 (177)
T 3e3v_A 97 GIDDNIAEDALILYTDK--LQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLIFDDEGHHH 174 (177)
T ss_dssp TCCHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC--------
T ss_pred CCCHHHHHHHHHhCCch--hHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCCCCcccccc
Confidence 57777777777543211 11235566666554432 2456667788998889998888888888766666666554
Q ss_pred C
Q 004863 265 H 265 (726)
Q Consensus 265 ~ 265 (726)
|
T Consensus 175 ~ 175 (177)
T 3e3v_A 175 H 175 (177)
T ss_dssp -
T ss_pred c
Confidence 4
No 74
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.03 E-value=1.3e+02 Score=30.49 Aligned_cols=103 Identities=9% Similarity=0.133 Sum_probs=57.2
Q ss_pred HhhHHHHHhhhhhhhccCCCc-CchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHH
Q 004863 55 DALLPTMKGLITNDLLRRSDM-DVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILD 133 (726)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHKDk-dVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLE 133 (726)
.....++.+|+. ++..+.-. .=++++++||+=|..=--+|+-|+.+.-.-=+.--+.-|..+..-.+..+. -..
T Consensus 42 rq~rdi~eall~-~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~~lhe----ei~ 116 (211)
T 3bqo_A 42 RRTRNSAEAIIH-GLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHE----EIQ 116 (211)
T ss_dssp HHHHHHHHHHHH-TCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCCHHHH----HHH
T ss_pred HHHHHHHHHHHh-ccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcccHHH----HHH
Confidence 445677888776 44444332 356789999998888888999998532222222233344445443333333 333
Q ss_pred HhhhhhhheeeccCCchHHHHHHHHHHHH
Q 004863 134 TVAKVRSCLLMLDLECDKLVVEMFQHFLK 162 (726)
Q Consensus 134 sLAeVKS~VLmlDLE~ddLI~eLFktFFd 162 (726)
.|-.+..+++|+.=.-...-.++|+.+|+
T Consensus 117 ~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 117 NLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 33444555555554444555566666665
No 75
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=20.75 E-value=1.2e+02 Score=32.40 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=25.6
Q ss_pred hcCCCCCCCh-----hHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhh
Q 004863 91 ITAPDSPYDD-----ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSC 141 (726)
Q Consensus 91 IyAPDAPYtD-----dqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~ 141 (726)
||.||.|.=. ++|.+-+...+...-....++.+ .++-.||-.|..+|++
T Consensus 334 Lf~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~~--~rf~kLLl~Lp~LR~i 387 (419)
T 3dzy_D 334 ILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESS--QLFAKLLQKMTDLRQI 387 (419)
T ss_dssp HSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHHHHH
Confidence 3568877532 34555544444443233335544 2445566666666665
No 76
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=20.61 E-value=2.1e+02 Score=29.67 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHhhhcCCCCCCCh-----hHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC-chHHHHHHH
Q 004863 84 CISEITRITAPDSPYDD-----ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMF 157 (726)
Q Consensus 84 CLaDILRIyAPDAPYtD-----dqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE-~ddLI~eLF 157 (726)
-+.||||+.+.++...+ ..-..|+..++ ..+.+...|+ . .+-.|..|++. +.-+ .-+++...|
T Consensus 121 PvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~---~~~~~~~~p~-n-~ml~lR~l~Nl------F~~~~g~~~l~~~~ 189 (304)
T 3ebb_A 121 PALDILRLSIKHPSVNENFCNEKEGAQFSSHLI---NLLNPKGKPA-N-QLLALRTFCNC------FVGQAGQKLMMSQR 189 (304)
T ss_dssp HHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHH---HTTCTTSCHH-H-HHHHHHHHHHG------GGSHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCccHHHHhhccccchHHHHHHH---HhcCCCCChH-H-HHHHHHHHHHc------cCCchhHHHHHHHH
Confidence 56799999887654432 11122332333 3344444442 2 44445544443 2222 234555556
Q ss_pred HHHHHHhhc---CCchhHHHHHH
Q 004863 158 QHFLKVIRS---NHPHFVFAAME 177 (726)
Q Consensus 158 ktFFdiVr~---dhp~~V~~~M~ 177 (726)
..+++.+.. ...+++...+.
T Consensus 190 ~~il~~~~~~~~~~nknl~iA~A 212 (304)
T 3ebb_A 190 ESLMSHAIELKSGSNKNIHIALA 212 (304)
T ss_dssp HHHHHHHHGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChhHHHHHH
Confidence 665554442 23455554443
No 77
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.33 E-value=87 Score=34.46 Aligned_cols=44 Identities=9% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhh
Q 004863 85 ISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (726)
Q Consensus 85 LaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeV 138 (726)
..||||+.++++|..+. |+.||-..+ . ++.|...+-.|..|++.
T Consensus 246 aLDLLRl~v~~p~~~~~----l~~li~~~l---~---~~~~an~MltlR~laNl 289 (425)
T 3pst_A 246 AYDIVRLIVKKLPYSSD----IKDYIEEGL---G---NKNITLTMLTVRILVNC 289 (425)
T ss_dssp HHHHHHHHGGGCSCGGG----GHHHHHHHT---T---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHH----HHHHHHHhc---C---CCChhHHHHHHHHHHHh
Confidence 78999999999987752 333332222 2 34568888888888765
No 78
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.28 E-value=1.2e+02 Score=29.59 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=45.9
Q ss_pred HhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhhHHHHHHHH
Q 004863 163 VIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232 (726)
Q Consensus 163 iVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~CadKLqp~I 232 (726)
+.++..+..=...+.+| ..+|...+.-|.+.+..|...|...+....--|..|...++.+|+..+...|
T Consensus 13 AT~~~~~~~dw~~~lei-cd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 13 ATSHLRLEPDWPSILLI-CDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHCTTCSSCCHHHHHHH-HHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HcCCCCCCcCHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 34444443333334443 3455566678999999998888766655556677788888899998876654
Done!