BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004864
(726 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 397 VHRGIYEAAKGIYEQMLPEVHAHLKACGKHATFRF--TGHSLGGSLSVLINLMLLIRGEV 454
VH G + + + P V L A H T++ TGHSLGG+ ++L + L R
Sbjct: 108 VHAGFLSSYEQVVNDYFPVVQEQLTA---HPTYKVIVTGHSLGGAQALLAGMDLYQREPR 164
Query: 455 PASSLLPVITFGAPSIMCGGD----HLLRKLGLPRSHVQSITLHRDIVP 499
+ L + T G P + G+ + + G+P Q RDIVP
Sbjct: 165 LSPKNLSIFTVGGPRV---GNPTFAYYVESTGIP---FQRTVHKRDIVP 207
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 394 EVVVHRGIYEAAKGIYEQMLPEVHAHLKACGKHATFRFTGHSLGGSLSVLINLMLLIRGE 453
+ +VH G ++ Y Q+ P++ + ++ + TGHSLGG+ ++L + L + G
Sbjct: 122 DCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQ-IAVTGHSLGGAAALLFGINLKVNGH 180
Query: 454 VPASSLLPVITFGAPSI 470
P V+T G P +
Sbjct: 181 DPL-----VVTLGQPIV 192
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 397 VHRGIYEAAKGIYEQMLPEVHAHLKACGKHATFRF--TGHSLGGSLSVLINLMLLIRGEV 454
VH+G ++ + +++ V K ++ +++ TGHSLGG+ +L L L R E
Sbjct: 107 VHKGFLDSYGEVQNELVATVLDQFK---QYPSYKVAVTGHSLGGATVLLCALDLYQREEG 163
Query: 455 PASSLLPVITFGAPSIMCGGD----HLLRKLGLPRSHVQSITLHRDIVP 499
+SS L + T G P + GD + + G+P + RDIVP
Sbjct: 164 LSSSNLFLYTQGQPRV---GDPAFANYVVSTGIPYRRTVN---ERDIVP 206
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 397 VHRGIYEAAKGIYEQMLPEVHAHLKACGKHATFRF--TGHSLGGSLSVLINLMLLIRGEV 454
VH+G ++ + +++ V K ++ +++ TGHSLGG+ ++L L L R E
Sbjct: 107 VHKGFLDSYGEVQNELVATVLDQFK---QYPSYKVAVTGHSLGGATALLCALDLYQREEG 163
Query: 455 PASSLLPVITFGAPSIMCGGD----HLLRKLGLPRSHVQSITLHRDIVP 499
+SS L + T G P + G+ + + G+P + RDIVP
Sbjct: 164 LSSSNLFLYTQGQPRV---GNPAFANYVVSTGIPYRRTVN---ERDIVP 206
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 397 VHRGIYEAAKGIYEQMLPEVHAHLKACGKHATFRF--TGHSLGGSLSVLINLMLLIRGEV 454
VH+G ++ + +++ V K ++ +++ TGHSLGG+ ++L L L R E
Sbjct: 107 VHKGFLDSYGEVQNELVATVLDQFK---QYPSYKVAVTGHSLGGATALLCALDLYQREEG 163
Query: 455 PASSLLPVITFGAPSIMCGGD----HLLRKLGLPRSHVQSITLHRDIVP 499
+SS L + T G P + G+ + + G+P + RDIVP
Sbjct: 164 LSSSNLFLYTQGQPRV---GNPAFANYVVSTGIPYRRTVN---ERDIVP 206
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 397 VHRGIYEAAKGIYEQMLPEVHAHLKACGKHATFRF--TGHSLGGSLSVLINLMLLIRGEV 454
VH+G ++ + +++ V K ++ +++ TGHSLGG+ ++L L L R E
Sbjct: 107 VHKGFLDSYGEVQNELVATVLDQFK---QYPSYKVAVTGHSLGGATALLCALDLYQREEG 163
Query: 455 PASSLLPVITFGAPSIMCGGD----HLLRKLGLPRSHVQSITLHRDIVP 499
+SS L + T G P + G+ + + G+P + RDIVP
Sbjct: 164 LSSSNLFLYTQGQPRV---GNPAFANYVVSTGIPYRRTVN---ERDIVP 206
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 398 HRGIYEAAKGIYEQMLPEVHAHLKACGKHATFR--FTGHSLGGSLSVLINLMLLIRGEVP 455
H G + + + + + +V ++ +H +R FTGHSLGG+L+ + L RG
Sbjct: 110 HDGFTSSWRSVADTLRQKVEDAVR---EHPDYRVVFTGHSLGGALATVAGADL--RGN-- 162
Query: 456 ASSLLPVITFGAPSIMCGGDHLLRKLGLPRS--HVQSITLHRDIVPR 500
+ V ++GAP + G+ + ++ + IT DIVPR
Sbjct: 163 -GYDIDVFSYGAPRV---GNRAFAEFLTVQTGGTLYRITHTNDIVPR 205
>pdb|1G03|A Chain A, Nmr Structure Of N-Terminal Domain Of Htlv-I Ca1-134
Length = 134
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 1 MDTLCLKSGIHGITSPISVGGPLEVRSNSAQQQ 33
+D+L ++ GITS + GPL V++N+ QQQ
Sbjct: 75 LDSLISEAETRGITSYNPLAGPLRVQANNPQQQ 107
>pdb|3G7N|A Chain A, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
pdb|3G7N|B Chain B, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
Length = 258
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 394 EVVVHRGIYEAAKGIYEQMLPEVHAHLKACGKHATFRFTGHSLGGSLSVLINLML 448
+V + RG++ +++ ++ EV A L A T GHSLGG+L+ + ++ L
Sbjct: 92 DVKIMRGVHRPWSAVHDTIITEVKA-LIAKYPDYTLEAVGHSLGGALTSIAHVAL 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,088,088
Number of Sequences: 62578
Number of extensions: 705698
Number of successful extensions: 1237
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 9
length of query: 726
length of database: 14,973,337
effective HSP length: 106
effective length of query: 620
effective length of database: 8,340,069
effective search space: 5170842780
effective search space used: 5170842780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)