Query 004865
Match_columns 726
No_of_seqs 433 out of 2241
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 14:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 1.1E-28 2.5E-33 284.2 9.7 400 226-664 119-606 (775)
2 COG0326 HtpG Molecular chapero 99.9 1E-24 2.2E-29 246.7 14.2 160 248-417 21-209 (623)
3 PTZ00130 heat shock protein 90 99.9 1.2E-23 2.6E-28 244.9 12.2 197 203-417 43-271 (814)
4 PTZ00272 heat shock protein 83 99.9 8.7E-22 1.9E-26 228.6 15.9 163 243-416 14-205 (701)
5 PRK05218 heat shock protein 90 99.9 1.4E-20 2.9E-25 217.3 23.0 166 242-416 14-208 (613)
6 KOG1845 MORC family ATPases [C 99.9 6.8E-23 1.5E-27 236.7 3.0 324 292-666 1-357 (775)
7 PRK14083 HSP90 family protein; 99.8 8E-21 1.7E-25 218.2 14.6 164 242-416 11-194 (601)
8 KOG0019 Molecular chaperone (H 99.8 1.8E-20 4E-25 209.4 10.4 155 253-420 58-238 (656)
9 KOG0020 Endoplasmic reticulum 99.8 1.6E-20 3.5E-25 204.7 8.4 153 253-419 96-283 (785)
10 PF13589 HATPase_c_3: Histidin 99.7 1.7E-17 3.8E-22 157.2 2.9 96 255-355 3-99 (137)
11 PF07496 zf-CW: CW-type Zinc F 99.6 3.1E-16 6.7E-21 125.6 1.3 45 616-660 1-49 (50)
12 TIGR00585 mutl DNA mismatch re 99.3 6.2E-12 1.3E-16 134.6 12.0 140 235-387 2-148 (312)
13 COG0323 MutL DNA mismatch repa 99.3 5.2E-12 1.1E-16 147.0 11.8 140 236-387 4-149 (638)
14 PRK00095 mutL DNA mismatch rep 99.2 1E-10 2.3E-15 136.0 12.7 139 235-387 2-147 (617)
15 COG1389 DNA topoisomerase VI, 99.2 8E-11 1.7E-15 129.7 9.3 135 252-391 34-183 (538)
16 KOG1979 DNA mismatch repair pr 99.0 1.6E-09 3.4E-14 122.1 8.8 141 235-387 7-153 (694)
17 KOG1978 DNA mismatch repair pr 98.8 6.8E-09 1.5E-13 119.2 8.2 138 237-386 2-145 (672)
18 PRK14868 DNA topoisomerase VI 98.6 1.4E-07 3E-12 110.8 11.0 129 254-389 46-189 (795)
19 TIGR01052 top6b DNA topoisomer 98.6 1.8E-07 4E-12 106.1 11.3 97 253-354 27-133 (488)
20 PRK04184 DNA topoisomerase VI 98.6 2.8E-07 6E-12 105.6 12.3 133 255-390 37-183 (535)
21 PRK05559 DNA topoisomerase IV 98.5 5.4E-07 1.2E-11 105.6 10.8 122 253-388 36-175 (631)
22 TIGR01055 parE_Gneg DNA topois 98.3 1.3E-06 2.8E-11 102.4 9.4 119 256-388 32-168 (625)
23 PRK14867 DNA topoisomerase VI 98.3 2.7E-06 5.9E-11 99.5 10.3 94 255-353 37-140 (659)
24 PRK05644 gyrB DNA gyrase subun 98.2 5.1E-06 1.1E-10 97.6 11.6 119 256-388 39-173 (638)
25 smart00433 TOP2c Topoisomerase 98.2 3.1E-06 6.8E-11 98.6 9.1 115 259-388 6-138 (594)
26 TIGR01059 gyrB DNA gyrase, B s 98.2 6.1E-06 1.3E-10 97.3 11.3 120 255-389 31-167 (654)
27 PRK14939 gyrB DNA gyrase subun 98.2 7.3E-06 1.6E-10 97.6 11.8 120 256-389 39-174 (756)
28 PF02518 HATPase_c: Histidine 98.2 9.6E-07 2.1E-11 79.3 3.2 88 255-350 6-98 (111)
29 KOG1977 DNA mismatch repair pr 97.7 2.3E-05 5.1E-10 90.5 4.0 138 239-387 5-149 (1142)
30 TIGR01058 parE_Gpos DNA topois 97.6 0.00029 6.4E-09 83.0 10.1 116 259-389 39-172 (637)
31 COG0187 GyrB Type IIA topoisom 97.4 0.00052 1.1E-08 79.6 9.5 118 259-390 41-176 (635)
32 COG3290 CitA Signal transducti 97.3 0.00046 1E-08 78.9 7.3 85 254-350 427-519 (537)
33 smart00387 HATPase_c Histidine 97.3 0.00057 1.2E-08 58.5 5.9 73 255-335 6-80 (111)
34 cd00075 HATPase_c Histidine ki 97.2 0.00078 1.7E-08 56.7 5.7 85 257-350 3-93 (103)
35 PLN03237 DNA topoisomerase 2; 97.1 0.0015 3.2E-08 82.3 9.8 85 255-349 78-179 (1465)
36 PRK10604 sensor protein RstB; 97.1 0.0013 2.8E-08 73.2 7.6 89 255-350 320-411 (433)
37 PHA02569 39 DNA topoisomerase 97.0 0.0017 3.8E-08 76.2 8.5 116 259-389 50-185 (602)
38 PRK10364 sensor protein ZraS; 96.9 0.0019 4E-08 72.0 7.7 84 254-350 348-436 (457)
39 PRK09470 cpxA two-component se 96.9 0.0023 5E-08 70.3 7.5 89 255-350 354-445 (461)
40 PRK09467 envZ osmolarity senso 96.8 0.0026 5.6E-08 69.7 7.6 86 255-349 332-420 (435)
41 COG0642 BaeS Signal transducti 96.7 0.0024 5.1E-08 64.6 5.9 59 254-318 228-287 (336)
42 PRK09303 adaptive-response sen 96.7 0.0048 1E-07 67.8 8.2 91 255-351 273-366 (380)
43 PRK11086 sensory histidine kin 96.7 0.0044 9.6E-08 69.5 8.1 82 255-349 434-522 (542)
44 PRK10755 sensor protein BasS/P 96.7 0.0026 5.7E-08 68.1 6.0 87 254-351 247-338 (356)
45 TIGR02966 phoR_proteo phosphat 96.7 0.0046 9.9E-08 63.9 7.5 89 255-350 230-323 (333)
46 TIGR02938 nifL_nitrog nitrogen 96.6 0.0034 7.4E-08 68.6 6.4 87 255-349 388-481 (494)
47 TIGR01386 cztS_silS_copS heavy 96.6 0.0037 8.1E-08 68.3 6.7 88 254-348 353-445 (457)
48 PTZ00109 DNA gyrase subunit b; 96.6 0.0078 1.7E-07 72.9 9.6 117 259-389 134-307 (903)
49 PRK11006 phoR phosphate regulo 96.5 0.005 1.1E-07 68.1 7.1 90 254-350 317-411 (430)
50 PTZ00108 DNA topoisomerase 2-l 96.4 0.014 3.1E-07 73.9 10.3 122 255-389 58-203 (1388)
51 PRK10549 signal transduction h 96.3 0.0069 1.5E-07 66.9 6.8 89 255-350 353-446 (466)
52 PLN03128 DNA topoisomerase 2; 96.2 0.0092 2E-07 74.5 7.8 122 255-389 53-195 (1135)
53 PRK15053 dpiB sensor histidine 96.2 0.0073 1.6E-07 68.5 6.4 85 255-349 433-526 (545)
54 PRK11100 sensory histidine kin 96.2 0.011 2.5E-07 64.7 7.5 89 254-350 368-461 (475)
55 PRK10815 sensor protein PhoQ; 96.2 0.009 1.9E-07 68.1 6.7 84 255-349 379-465 (485)
56 PRK11360 sensory histidine kin 96.1 0.01 2.3E-07 66.4 7.0 85 255-350 501-589 (607)
57 TIGR02916 PEP_his_kin putative 96.1 0.0084 1.8E-07 70.9 6.4 83 255-350 580-668 (679)
58 COG4191 Signal transduction hi 96.1 0.0088 1.9E-07 69.4 6.0 57 254-316 497-558 (603)
59 PRK15347 two component system 95.7 0.023 5E-07 68.6 7.9 86 255-351 514-603 (921)
60 PRK10337 sensor protein QseC; 95.5 0.025 5.4E-07 62.4 6.6 84 255-350 353-439 (449)
61 PRK11091 aerobic respiration c 95.5 0.026 5.6E-07 67.4 7.2 93 255-352 399-495 (779)
62 PRK11073 glnL nitrogen regulat 95.3 0.031 6.6E-07 59.5 6.2 89 255-350 238-336 (348)
63 PRK13837 two-component VirA-li 95.2 0.03 6.4E-07 67.9 6.6 90 255-351 561-664 (828)
64 PRK09835 sensor kinase CusS; P 95.1 0.043 9.3E-07 60.8 6.9 88 254-349 375-468 (482)
65 TIGR03785 marine_sort_HK prote 95.0 0.052 1.1E-06 65.0 7.7 89 255-350 598-691 (703)
66 PRK11466 hybrid sensory histid 94.9 0.049 1.1E-06 66.0 7.0 87 255-352 562-652 (914)
67 TIGR01925 spIIAB anti-sigma F 94.9 0.07 1.5E-06 49.9 6.6 81 254-348 39-124 (137)
68 TIGR02956 TMAO_torS TMAO reduc 94.7 0.066 1.4E-06 65.2 7.5 88 255-352 580-673 (968)
69 PRK10490 sensor protein KdpD; 94.5 0.06 1.3E-06 66.2 6.6 87 255-350 779-870 (895)
70 PRK10841 hybrid sensory kinase 94.5 0.075 1.6E-06 65.6 7.2 89 255-351 563-656 (924)
71 PRK10547 chemotaxis protein Ch 94.4 0.082 1.8E-06 63.2 7.2 88 256-351 387-512 (670)
72 PRK11107 hybrid sensory histid 93.8 0.14 3E-06 61.9 7.7 95 255-352 409-508 (919)
73 PRK13557 histidine kinase; Pro 93.7 0.15 3.2E-06 57.0 7.2 92 255-351 278-383 (540)
74 PRK04069 serine-protein kinase 93.3 0.13 2.7E-06 50.4 5.1 52 255-312 43-99 (161)
75 PF13581 HATPase_c_2: Histidin 93.3 0.11 2.5E-06 47.6 4.5 78 254-346 31-113 (125)
76 PRK10618 phosphotransfer inter 93.3 0.18 4E-06 62.1 7.5 93 255-352 566-662 (894)
77 COG4585 Signal transduction hi 93.2 0.094 2E-06 57.3 4.5 71 254-350 279-353 (365)
78 KOG0787 Dehydrogenase kinase [ 92.7 0.25 5.4E-06 55.0 6.8 73 255-333 261-348 (414)
79 PRK09959 hybrid sensory histid 92.6 0.25 5.4E-06 62.0 7.5 93 255-351 829-925 (1197)
80 PRK03660 anti-sigma F factor; 92.6 0.34 7.3E-06 45.7 6.7 45 254-304 39-88 (146)
81 COG3850 NarQ Signal transducti 92.5 0.18 3.9E-06 58.3 5.6 75 255-352 482-558 (574)
82 TIGR01924 rsbW_low_gc serine-p 92.5 0.17 3.6E-06 49.7 4.7 85 254-348 42-131 (159)
83 PRK11644 sensory histidine kin 90.9 0.24 5.2E-06 56.9 4.4 45 255-305 411-456 (495)
84 COG0643 CheA Chemotaxis protei 90.4 0.52 1.1E-05 56.9 6.7 105 235-353 421-564 (716)
85 COG2972 Predicted signal trans 90.3 0.35 7.5E-06 55.0 5.0 54 254-311 350-407 (456)
86 PRK10600 nitrate/nitrite senso 90.3 0.28 6E-06 56.8 4.3 46 254-305 469-515 (569)
87 PF07744 SPOC: SPOC domain; I 89.9 0.18 3.8E-06 46.4 1.9 45 70-114 66-119 (119)
88 COG2205 KdpD Osmosensitive K+ 89.9 0.85 1.8E-05 55.4 7.8 59 255-317 776-835 (890)
89 COG5002 VicK Signal transducti 89.3 0.34 7.4E-06 53.7 3.7 71 256-334 344-417 (459)
90 COG3920 Signal transduction hi 89.1 0.44 9.5E-06 49.5 4.2 44 257-305 125-174 (221)
91 PRK13560 hypothetical protein; 88.4 0.44 9.4E-06 56.2 4.1 44 257-305 714-762 (807)
92 COG2172 RsbW Anti-sigma regula 86.8 1.2 2.5E-05 43.7 5.3 83 253-349 39-127 (146)
93 COG4192 Signal transduction hi 86.7 1.2 2.6E-05 51.1 6.0 62 254-318 564-626 (673)
94 COG5000 NtrY Signal transducti 85.6 1 2.2E-05 53.2 4.8 51 256-312 602-661 (712)
95 PRK10935 nitrate/nitrite senso 79.1 2.2 4.9E-05 48.6 4.5 46 255-305 472-518 (565)
96 PRK13559 hypothetical protein; 78.2 2.2 4.7E-05 45.8 3.8 47 255-305 268-319 (361)
97 smart00249 PHD PHD zinc finger 77.6 2.1 4.6E-05 32.1 2.6 33 614-646 10-45 (47)
98 COG4251 Bacteriophytochrome (l 72.9 5.1 0.00011 47.7 5.2 51 256-312 638-691 (750)
99 COG3852 NtrB Signal transducti 66.9 10 0.00023 41.9 5.6 58 255-312 242-309 (363)
100 COG4564 Signal transduction hi 64.6 15 0.00033 41.0 6.3 72 259-353 364-439 (459)
101 COG3851 UhpB Signal transducti 51.9 18 0.00039 40.9 4.3 46 254-305 410-456 (497)
102 PRK13610 photosystem II reacti 38.7 12 0.00027 35.4 0.5 17 82-98 91-107 (113)
103 TIGR03047 PS_II_psb28 photosys 36.9 16 0.00034 34.6 0.9 17 82-98 84-100 (109)
104 PF03912 Psb28: Psb28 protein; 35.8 14 0.0003 34.9 0.4 15 84-98 86-100 (108)
105 COG3275 LytS Putative regulato 35.5 31 0.00067 40.3 3.1 42 258-305 460-507 (557)
106 PLN00039 photosystem II reacti 34.7 18 0.00039 34.3 0.9 17 82-98 85-101 (111)
107 PF00628 PHD: PHD-finger; Int 34.7 21 0.00045 28.1 1.2 34 613-646 9-46 (51)
108 PRK13612 photosystem II reacti 33.7 19 0.00042 34.2 0.9 17 82-98 87-103 (113)
109 PRK13611 photosystem II reacti 33.0 20 0.00044 33.6 0.9 17 82-98 80-96 (104)
110 CHL00128 psbW photosystem II p 32.5 21 0.00045 34.0 0.9 17 82-98 87-103 (113)
111 KOG0355 DNA topoisomerase type 27.7 2.2E+02 0.0048 35.4 8.5 45 255-307 54-102 (842)
112 COG2865 Predicted transcriptio 27.5 69 0.0015 37.4 4.2 67 254-334 270-351 (467)
113 COG2191 Formylmethanofuran deh 26.8 71 0.0015 33.4 3.7 85 560-647 94-198 (206)
114 cd00594 KU Ku-core domain; inc 26.8 68 0.0015 33.8 3.8 67 49-116 87-161 (272)
115 KOG1973 Chromatin remodeling p 25.1 33 0.00072 37.0 1.1 29 617-646 231-263 (274)
116 smart00559 Ku78 Ku70 and Ku80 24.8 80 0.0017 30.5 3.5 66 50-116 35-109 (140)
117 cd00114 LIGANc NAD+ dependent 23.6 46 0.001 36.6 1.8 28 544-571 107-141 (307)
118 cd02986 DLP Dim1 family, Dim1- 21.1 91 0.002 29.7 3.0 30 548-577 71-105 (114)
119 PF06540 GMAP: Galanin message 20.5 88 0.0019 26.8 2.4 34 68-102 11-44 (62)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.1e-28 Score=284.17 Aligned_cols=400 Identities=21% Similarity=0.227 Sum_probs=275.9
Q ss_pred ccccCCCCcceeecCHHHHHHhcccccCCHHHHHHHHHHccccc---CCCccEEEEEeceeccCCCCcCEEEEE-----e
Q 004865 226 VKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-----D 297 (726)
Q Consensus 226 ~~~~~~~~~~~~~v~p~~L~slstsh~~~~f~AIaELIDNA~DA---~At~I~I~I~~~~~~~~~~~~~~L~I~-----D 297 (726)
+...+.++-.+++++|+|||+++++| +|.++|++||||||+|. +++.+.|.-. +...+.....++|. |
T Consensus 119 ~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I---~p~~d~~i~a~~v~~~~~s~ 194 (775)
T KOG1845|consen 119 VIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYI---NPVMDIFIRALVVQLKRISD 194 (775)
T ss_pred ceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeee---cccccccceeEEeeccceec
Confidence 34455555699999999999999999 89999999999999997 4555443321 11122224455555 7
Q ss_pred CCCCCCHHHHHHhhhcccCCCCCCCCCccccccceeeeeeeccCCeEEEEEeeC------CCCcceEEEeeec--CCCcc
Q 004865 298 DGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN--QGKDN 369 (726)
Q Consensus 298 NG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~------g~~s~g~ls~sf~--~g~~~ 369 (726)
||+||.++-+..+|.+|.+.+. +....+||||+||+++.|++|.+++|++|.. ..+++|+++++|. ++.++
T Consensus 195 ~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d 273 (775)
T KOG1845|consen 195 DGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRD 273 (775)
T ss_pred cccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCc
Confidence 7999999999999999998875 3468999999999999999999999999943 2578999999994 57889
Q ss_pred EEEcC----cccCCCC-cEEEEEeccchhhhhHhhHH-----HHhhhCCCcch--hHHHh-h------hc----cc-CCC
Q 004865 370 LEIPI----VSYYRKG-QFMELDTVVQSEATAKYNLK-----SIKEFSPFNKY--LIGEK-A------GL----FQ-DKC 425 (726)
Q Consensus 370 viVP~----~~~~~~G-T~I~l~lk~~~e~~~~~~L~-----~I~kySpF~s~--pI~e~-~------~~----~~-~~~ 425 (726)
++||+ ...+... -+..+..+... .+..+++ .+++|+||.+. .+.+. . .. +. ...
T Consensus 274 ~iv~~~~i~~~~e~~~~~~~~i~~~s~~--~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~ 351 (775)
T KOG1845|consen 274 FIVPMRLIKMDYEKSDQLWQGILYKSGV--DWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNK 351 (775)
T ss_pred eeEecchhhhhhhcccccccceeecccc--ccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccC
Confidence 99999 4444321 11111122221 2233333 49999999984 22220 0 01 22 257
Q ss_pred CCeEEEEEcccCCC---CceeeeecCCCCCCCCCccCceeeecccccCCCCcccccCcchhhHHHHHHhhhcC--CCeEE
Q 004865 426 TGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV--PRMKI 500 (726)
Q Consensus 426 ~GT~III~NLrr~~---~~~ELDF~~d~~~~~~f~~~DI~i~~~~~~~~~~q~~~~~p~~~SLRaYlSILYL~--Prm~I 500 (726)
+||.+|+||+++|. +-.|+||+.+ +++|. ....++++.|.+|||+. +++++
T Consensus 352 ~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~~~~~~~~ 407 (775)
T KOG1845|consen 352 PGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLTRRLRFKS 407 (775)
T ss_pred CCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchhccccchh
Confidence 99999999996653 3488999765 35542 13557999999999975 79999
Q ss_pred EEcCeeecccccccccCccee--ecccccc-------eEEEEEEccccccccc-ccceEEEEEcCeeEe-----------
Q 004865 501 YVQGSLVRSRPLAKSLNKTCV--ETGIIMG-------KSAHLTLGRCQLEWEQ-MNCGIFLYWHGRLIE----------- 559 (726)
Q Consensus 501 ~LrGkkV~~k~ia~~L~~~~v--~k~~~~~-------k~V~it~Gf~k~e~~r-~~~G~~VYh~NRLIk----------- 559 (726)
+++|+++.++.+.....++.. +.+.... ..+....||.+...+. ...|++|||++|||+
T Consensus 408 v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n 487 (775)
T KOG1845|consen 408 VLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDN 487 (775)
T ss_pred ccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhcccceeeecC
Confidence 999999999998876555431 1111111 1122245666554322 357999999999998
Q ss_pred ---ecCCceEEec--------CCCcCcccchHHHHHHHHHHHHHHHHHhhccCCccccc---ccCCCC-----CCCceEe
Q 004865 560 ---DEGNGLVWVH--------NNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVK---DGALYK-----PDQEWVQ 620 (726)
Q Consensus 560 ---~~g~GVVGV~--------HnKQdFe~t~~y~rL~~~L~~~l~eYW~~~~~~~~~~~---~~~~~~-----~~~~WVQ 620 (726)
+.+.++++++ |++|+|+++-.-++++.++.++++.||...++.+.... ....+. ....=-+
T Consensus 488 ~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~~~~~~Ke~~~~~ 567 (775)
T KOG1845|consen 488 ATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKERESTTTVVKEEKPEN 567 (775)
T ss_pred CCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhhhcccceeeccccccc
Confidence 4678888873 99999999999999999999999999999888876431 111100 0011111
Q ss_pred CCcchhhccCCCCCCCCCCCCCceecCCC---CCCCCCCCcccccCC
Q 004865 621 CNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG 664 (726)
Q Consensus 621 Cd~C~KWR~Lp~~~~~~~lp~~W~C~mnp---~~~sC~~pEe~~~~~ 664 (726)
| .+= ......-...|+|..++ .++.|+-+-...+.+
T Consensus 568 ~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
T KOG1845|consen 568 N---HLS-----SSKRTQRRKSTGRAISVAVEKFNLRSGPNGRGQID 606 (775)
T ss_pred c---hhc-----chhccccccccccccccchhhhccccccCCcCCcc
Confidence 1 111 11123456789999998 467777666555554
No 2
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-24 Score=246.70 Aligned_cols=160 Identities=26% Similarity=0.360 Sum_probs=129.3
Q ss_pred cccccCCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhh
Q 004865 248 GQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (726)
Q Consensus 248 stsh~~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (726)
..+.|+...-+|||||+||.||.. ..+.|.|.. +++..+|+|.|||+|||++|++++|
T Consensus 21 ihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~------Dk~~kTLtI~DNGIGMT~~Ev~~~L 94 (623)
T COG0326 21 IHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF------DKDNKTLTISDNGIGMTKDEVIENL 94 (623)
T ss_pred HHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE------cccCCEEEEEeCCCCCCHHHHHHHH
Confidence 333333333349999999999942 356676652 5678999999999999999999998
Q ss_pred h-cccCCC--------CC-CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcccCCC-
Q 004865 312 Y-FGHKQP--------DA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRK- 380 (726)
Q Consensus 312 ~-fG~S~k--------~~-~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~~~~- 380 (726)
+ ++.|.+ .. ++...||||||||||||| |+++|+|.||+.+... +..|.+ .|.+.|+|.....+.+
T Consensus 95 gTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~-~~~W~S--~g~g~ytv~~~~~~~~~ 170 (623)
T COG0326 95 GTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDE-AYHWES--DGEGEYTVEDIDKEPRR 170 (623)
T ss_pred HHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCc-ceEEEE--cCCCceEEeeccCCCCC
Confidence 7 333321 11 468899999999999999 9999999999999644 448888 7889999988888885
Q ss_pred CcEEEEEeccc-hhhhhHhhHHH-HhhhCCCcchhHHHh
Q 004865 381 GQFMELDTVVQ-SEATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 381 GT~I~l~lk~~-~e~~~~~~L~~-I~kySpF~s~pI~e~ 417 (726)
||+|+||++++ .+++.+|.|+. |+|||.|+.+||...
T Consensus 171 GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~ 209 (623)
T COG0326 171 GTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIE 209 (623)
T ss_pred CcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEe
Confidence 99999999986 47999999977 999999999999854
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=99.90 E-value=1.2e-23 Score=244.94 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=146.5
Q ss_pred CccccCCCCCcccccCCCCCcccccccCCCCcceeecCHH-HHHHhcccccCCHHHHHHHHHHcccccCC----------
Q 004865 203 PVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKA---------- 271 (726)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~-~L~slstsh~~~~f~AIaELIDNA~DA~A---------- 271 (726)
|.|-.|.-|-+.|+++-. | +.+.....|++.-+ .|+.++.+.|++...+|||||+||+||.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~--~-----~~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~ 115 (814)
T PTZ00130 43 EEVKKDRDNIPEIEDGEK--P-----TSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDE 115 (814)
T ss_pred chhhcccccCcccccCCC--C-----CcccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCc
Confidence 444455555554544321 1 22223344666543 45555777777777779999999999975
Q ss_pred ------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCC--------C-CCCCCccccccceeee
Q 004865 272 ------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADDPNRIGRFGVGFKT 335 (726)
Q Consensus 272 ------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k--------~-~~d~~~IGqFGvGFKs 335 (726)
..+.|.|.. +....+|+|.|||+|||++|+.++|+ +++|.. . ..+...||||||||||
T Consensus 116 ~~~~~~~~~~I~I~~------D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYS 189 (814)
T PTZ00130 116 SVLGEEKKLEIRISA------NKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYS 189 (814)
T ss_pred hhcCCCCCceEEEEE------CCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhh
Confidence 356777763 45578999999999999999998876 555431 1 2246799999999999
Q ss_pred eeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCccc---CCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCc
Q 004865 336 GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY---YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFN 410 (726)
Q Consensus 336 AsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~---~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~ 410 (726)
||| +|++|+|.||+.+. .++.|.+ .|.+.+.|...+. ..+||+|+||++++. ++++.+.|+. |.|||.|+
T Consensus 190 aFm-VAdkV~V~Trs~~~--~~~~W~s--~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI 264 (814)
T PTZ00130 190 AFL-VADKVIVYTKNNND--EQYIWES--TADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFI 264 (814)
T ss_pred eee-ecCEEEEEEcCCCC--ceEEEEE--CCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccC
Confidence 999 99999999998773 5788988 6777888766443 368999999999865 7889999977 99999999
Q ss_pred chhHHHh
Q 004865 411 KYLIGEK 417 (726)
Q Consensus 411 s~pI~e~ 417 (726)
.+||...
T Consensus 265 ~~PI~l~ 271 (814)
T PTZ00130 265 QYPIYLL 271 (814)
T ss_pred CCCEEEc
Confidence 9999753
No 4
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.87 E-value=8.7e-22 Score=228.64 Aligned_cols=163 Identities=23% Similarity=0.298 Sum_probs=128.0
Q ss_pred HHHHhcccccCCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH
Q 004865 243 YLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (726)
Q Consensus 243 ~L~slstsh~~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (726)
.|+-++.+.|++...+|||||+||.||.. ..+.|.|.. +....+|+|.|||+||+++|
T Consensus 14 Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~L~I~DnGiGMt~ed 87 (701)
T PTZ00272 14 LMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP------DKENKTLTVEDNGIGMTKAD 87 (701)
T ss_pred HHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE------cCCCCEEEEEECCCCCCHHH
Confidence 44455666666666669999999999953 234566652 44567999999999999999
Q ss_pred HHHhhh-cccCCC--------CCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCccc
Q 004865 307 VVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY 377 (726)
Q Consensus 307 L~~~l~-fG~S~k--------~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~ 377 (726)
+.+.|+ +|.|.. ...+...||||||||+|+|| +|++|+|.||+.+. .++.|.+ .|.+.++|...+.
T Consensus 88 l~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~--~~~~W~s--~~~g~y~i~~~~~ 162 (701)
T PTZ00272 88 LVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSD--ESYVWES--SAGGTFTITSTPE 162 (701)
T ss_pred HHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCC--ceEEEEE--CCCCcEEEEeCCC
Confidence 998876 554421 12346799999999999999 99999999998764 5899988 6667787754332
Q ss_pred C--CCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004865 378 Y--RKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 378 ~--~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
. .+||+|+||++++. ++++.+.++. |.|||.|+.+||..
T Consensus 163 ~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 163 SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 2 68999999999875 7888999977 99999999999975
No 5
>PRK05218 heat shock protein 90; Provisional
Probab=99.86 E-value=1.4e-20 Score=217.32 Aligned_cols=166 Identities=26% Similarity=0.342 Sum_probs=128.4
Q ss_pred HHHHHhcccccCCHHHHHHHHHHcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004865 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 242 ~~L~slstsh~~~~f~AIaELIDNA~DA~----------------At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
+.|..++.+.|+++..+|||||+||+||. +....|.|.. +.+...|+|.|||+||+.+
T Consensus 14 ~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~------d~~~~~i~I~DnG~GMt~e 87 (613)
T PRK05218 14 QLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF------DKEARTLTISDNGIGMTRE 87 (613)
T ss_pred HHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE------cCCCCeEEEEECCCCCCHH
Confidence 45566677788889999999999999993 3445666542 2344579999999999999
Q ss_pred HHHHhhh-cccCCCC----------CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcC
Q 004865 306 DVVRMTY-FGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 374 (726)
Q Consensus 306 eL~~~l~-fG~S~k~----------~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~ 374 (726)
++.+.++ .|+|.+. ..+...||+||+||+|++| +|++|+|.||+.+....|+.|.+ +|...+.|..
T Consensus 88 el~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~~~~~~~w~~--~g~~~~~i~~ 164 (613)
T PRK05218 88 EVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM-VADKVTVITRSAGPAAEAVRWES--DGEGEYTIEE 164 (613)
T ss_pred HHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh-ccCEEEEEEcCCCCCCceEEEEE--eCCceeEEeE
Confidence 9998764 6665321 1246899999999998766 99999999999775556888877 5666676655
Q ss_pred cccCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004865 375 VSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 375 ~~~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
.+...+||+|+++++++. ++.+.+.++. |.+||.|..+||..
T Consensus 165 ~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~ 208 (613)
T PRK05218 165 IEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKL 208 (613)
T ss_pred CCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEE
Confidence 444468999999999764 6777788876 99999999988753
No 6
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.8e-23 Score=236.69 Aligned_cols=324 Identities=20% Similarity=0.245 Sum_probs=237.7
Q ss_pred EEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecC--CCcc
Q 004865 292 MLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ--GKDN 369 (726)
Q Consensus 292 ~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~--g~~~ 369 (726)
+|++.|||.||+++++..+..|+. ....||+||+|+|+++|++|++++++|+..+.+++++++++|++ ..+.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc------cccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 478999999999999999998833 45789999999999999999999999999999999999999964 5678
Q ss_pred EEEcCcccCCCCcEEEEEeccchhhhhHhhHHHHhhhCCCcchhHHHhhhccc---CCCCCeEEEEEcccCC-CCceeee
Q 004865 370 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQ---DKCTGTQIYIWNLDQW-GSNYCLE 445 (726)
Q Consensus 370 viVP~~~~~~~GT~I~l~lk~~~e~~~~~~L~~I~kySpF~s~pI~e~~~~~~---~~~~GT~III~NLrr~-~~~~ELD 445 (726)
+++|++.|+.++..+.. .-...+|++|++||+|... ..+.++++ ....||.+||.|+++. .+.++++
T Consensus 75 vvvP~~t~~~~~~~~~~-------~k~~~~l~~~~c~sfwKag--~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk 145 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVT-------EKFAFSLEAIYCRSFWKAG--DYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHK 145 (775)
T ss_pred ceecccccccccccccc-------cccccccchhhhcCccccc--chhcccccceeccCCceeEEEEehhhhcCCCcccc
Confidence 89999999998877654 1234578899999999983 22333332 2234589999998886 4678999
Q ss_pred ecCCCCCCCCCccCceeeecccccCCCCcccccCcchhhHHHHHHhhhcCCCeEEEEcCeeecccccccccC--cceeec
Q 004865 446 WDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLN--KTCVET 523 (726)
Q Consensus 446 F~~d~~~~~~f~~~DI~i~~~~~~~~~~q~~~~~p~~~SLRaYlSILYL~Prm~I~LrGkkV~~k~ia~~L~--~~~v~k 523 (726)
|..| ..||+|+++- ..++-+.+ |+.++|+.|+|.|++++..|+.+.+....- .+++.+
T Consensus 146 ~a~~--------a~aeLldnal---------DEi~~~~t---f~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~ 205 (775)
T KOG1845|consen 146 WAKG--------AIAELLDNAL---------DEITNGAT---FVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIR 205 (775)
T ss_pred cccC--------hhhhhccccc---------cccccccc---eEEeeeecccccccceeEEeeccceeccccccCHHHHH
Confidence 9776 4799887641 22332334 499999999999999999999887544321 222221
Q ss_pred c----------cccceEEEEEEcccccccccccceEEEEEcCeeEe---ecCCceEEe--------cCCCcCcccchHHH
Q 004865 524 G----------IIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIE---DEGNGLVWV--------HNNKQGFLDCEPYA 582 (726)
Q Consensus 524 ~----------~~~~k~V~it~Gf~k~e~~r~~~G~~VYh~NRLIk---~~g~GVVGV--------~HnKQdFe~t~~y~ 582 (726)
. +...+..+...||...- ...|..+|+-+|.=. ..+.+.||. +| |+||-.+.
T Consensus 206 ~~m~l~~~~k~e~~~tv~q~~~gfktst---~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~-~~d~iv~~--- 278 (775)
T KOG1845|consen 206 KCMSLGYSSKKEANSTVGQYGNGFKTST---MRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTG-KRDFIVPM--- 278 (775)
T ss_pred HHHHhhhhhhhhhhhhhhhhccccccch---hhhccceeEeehhhhhccCCcceeEEEEEEeeecccc-CCceeEec---
Confidence 1 11223445566776532 238999999999633 345677887 47 99999888
Q ss_pred HHHHHHHHHHHHHHhhc-cCC-cccccccCCCCCCCceEeCCcchhhccCCCCCCCCCCCCCceecCCC--CCCCCCCCc
Q 004865 583 RLEEWLGKVADEYWDNK-FDS-LNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP--FEGLCDLPE 658 (726)
Q Consensus 583 rL~~~L~~~l~eYW~~~-~~~-~~~~~~~~~~~~~~~WVQCd~C~KWR~Lp~~~~~~~lp~~W~C~mnp--~~~sC~~pE 658 (726)
+|++...+...++|..- +.. ..+.. .+ +..+ . ..|+||+..+...+ .++..|+|..++ .+..|.++.
T Consensus 279 ~~i~~~~e~~~~~~~~i~~~s~~~~~~-n~-~i~~--~---~~~L~w~p~~~~~~--~l~q~~v~~~~~~~ef~~~~~~~ 349 (775)
T KOG1845|consen 279 RLIKMDYEKSDQLWQGILYKSGVDWAV-NL-EIEV--T---ERFLKWSPYSHLLD--LLGQNSVQYSKDFPEFGHQFNIM 349 (775)
T ss_pred chhhhhhhcccccccceeeccccccce-ee-eeHH--H---HHHhhcCccccHHH--Hhhhhhhhhccccchhcchhhhc
Confidence 89999999999999651 110 00000 00 0000 0 07999999999875 889999999997 579999999
Q ss_pred ccccCCce
Q 004865 659 QKVDAGVV 666 (726)
Q Consensus 659 e~~~~~~~ 666 (726)
.+....+|
T Consensus 350 ~~~g~~~I 357 (775)
T KOG1845|consen 350 NKPGTDVI 357 (775)
T ss_pred cCCCceee
Confidence 98888777
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=99.84 E-value=8e-21 Score=218.18 Aligned_cols=164 Identities=16% Similarity=0.230 Sum_probs=128.5
Q ss_pred HHHHHhcccccCCHHHHHHHHHHcccccCCC----------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhh
Q 004865 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (726)
Q Consensus 242 ~~L~slstsh~~~~f~AIaELIDNA~DA~At----------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (726)
..|+.++.+.|+++..+|+|||+||+||.+. .|.|.+. +.+...|+|.|||+||+.+++.+.+
T Consensus 11 ~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-------d~~~~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 11 GVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-------DAGGGTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-------cCCCcEEEEEeCCCCCCHHHHHHHH
Confidence 3556667777888999999999999999764 4444431 2346899999999999999999875
Q ss_pred -hcccCCCCC-----CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCc--ccCCCCcE
Q 004865 312 -YFGHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV--SYYRKGQF 383 (726)
Q Consensus 312 -~fG~S~k~~-----~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~--~~~~~GT~ 383 (726)
.+|.|.+.. .+...||+||+||+|++| +|++|+|.||+.+ ...++.|.+. +.+.+.|... .-..+||+
T Consensus 84 ~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~-~~~~~~W~~~--~~g~y~i~~~~~~~~~~GT~ 159 (601)
T PRK14083 84 ATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAK-DGPAVEWRGK--ADGTYSVRKLETERAEPGTT 159 (601)
T ss_pred hhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCC-CCceEEEEEC--CCCceEEEeCCCCCCCCCCE
Confidence 478776532 135789999999999888 9999999999975 3568889874 4446666542 33468999
Q ss_pred EEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004865 384 MELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 384 I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
|+++++++. ++..++.++. |.+||.|..+||..
T Consensus 160 I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l 194 (601)
T PRK14083 160 VYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRV 194 (601)
T ss_pred EEEEecCchhhhccHHHHHHHHHHHhccCCCCccc
Confidence 999998754 6777778766 99999999999975
No 8
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.8e-20 Score=209.41 Aligned_cols=155 Identities=30% Similarity=0.416 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHcccccCC--------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh----cc
Q 004865 253 GWIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY----FG 314 (726)
Q Consensus 253 ~~~f~AIaELIDNA~DA~A--------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~----fG 314 (726)
+.+| +||||+||.||.. ..+.|.|. +++...+|+|.|+|+|||++||.++++ .|
T Consensus 58 kEvF--lRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~------~nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSG 129 (656)
T KOG0019|consen 58 KEVF--LRELISNASDALEKLRYLELKGDEKALPELEIRII------TNKDKRTITIQDTGIGMTKEDLVNNLGTIAKSG 129 (656)
T ss_pred hHHH--HHhhhccccchHHHHHHHhhcCccccccceeEEec------cCCCcceEEEEecCCCcCHHHHHhhhhhhhhcc
Confidence 4577 9999999999953 45666665 367789999999999999999999987 34
Q ss_pred cC-----CC-CCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcccCCCCcEEEEEe
Q 004865 315 HK-----QP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDT 388 (726)
Q Consensus 315 ~S-----~k-~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~~~~GT~I~l~l 388 (726)
++ .+ ..++.+.|||||+|||||+| ++++|.|+||+.+.. ++.|.+ .+.+.++|...+-..+||.|++|+
T Consensus 130 tK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e--~y~Wes--~~~gs~~v~~~~~~~rGTki~l~l 204 (656)
T KOG0019|consen 130 SKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE--GLQWTS--NGRGSYEIAEASGLRTGTKIVIHL 204 (656)
T ss_pred cHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc--ceeeec--CCCCceEEeeccCccccceEEeee
Confidence 43 13 34567899999999999999 999999999999874 888988 667788887766678999999999
Q ss_pred cc-chhhhhHhhHHH-HhhhCCCcchhHHHhhhc
Q 004865 389 VV-QSEATAKYNLKS-IKEFSPFNKYLIGEKAGL 420 (726)
Q Consensus 389 k~-~~e~~~~~~L~~-I~kySpF~s~pI~e~~~~ 420 (726)
+. +.+++++.+++. |+|||.|+++||..+-..
T Consensus 205 Ke~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~ek 238 (656)
T KOG0019|consen 205 KEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGER 238 (656)
T ss_pred hhhhhhhccHhHHHHHHhhccccccccchhhhhh
Confidence 97 568999999977 999999999999865444
No 9
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.6e-20 Score=204.74 Aligned_cols=153 Identities=27% Similarity=0.414 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh----
Q 004865 253 GWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY---- 312 (726)
Q Consensus 253 ~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~---- 312 (726)
+.+| +||||+||.||.. ..+.|.|. .++.+..|.|.|.|+||++++|.++|+
T Consensus 96 KeIF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK------~Dke~klLhi~DtGiGMT~edLi~NLGTIAk 167 (785)
T KOG0020|consen 96 KEIF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIK------ADKEKKLLHITDTGIGMTREDLIKNLGTIAK 167 (785)
T ss_pred hHHH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEe------echhhCeeeEecccCCccHHHHHHhhhhhhc
Confidence 4678 9999999999953 35566665 356789999999999999999999987
Q ss_pred cccCC-----CCCC-----CCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcccC---C
Q 004865 313 FGHKQ-----PDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYY---R 379 (726)
Q Consensus 313 fG~S~-----k~~~-----d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~~---~ 379 (726)
.|+|. .... ....|||||||||+|++ +++.|.|+||+++. ..++|.+- ...+.|...+|. +
T Consensus 168 SGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD--~QyiWESd---an~FsvseDprg~tL~ 241 (785)
T KOG0020|consen 168 SGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDD--SQYIWESD---ANSFSVSEDPRGNTLG 241 (785)
T ss_pred ccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCc--cceeeecc---CcceeeecCCCCCccc
Confidence 34431 1111 14799999999999988 99999999999986 46788872 236777665554 5
Q ss_pred CCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHHhhh
Q 004865 380 KGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAG 419 (726)
Q Consensus 380 ~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e~~~ 419 (726)
+||.|+|+++++. +|+++..|+. |.|||.|+++||..+..
T Consensus 242 RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsS 283 (785)
T KOG0020|consen 242 RGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSS 283 (785)
T ss_pred CccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeec
Confidence 8999999999875 7888888876 99999999999987654
No 10
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.67 E-value=1.7e-17 Score=157.20 Aligned_cols=96 Identities=34% Similarity=0.518 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCC-CCCCcccccccee
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA-DDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~-~d~~~IGqFGvGF 333 (726)
+..||+|||+||+||.|+.|.|.|... ..+...|.|.|||.||+.++|..++.+|.+.+.. .+...+|+||+|+
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~-----~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDED-----KKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEE-----TTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcC-----CCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 368999999999999999999999852 2467899999999999999999998898887631 2367899999999
Q ss_pred eeeeeccCCeEEEEEeeCCCCc
Q 004865 334 KTGAMRLGKDALVLTQTADSRS 355 (726)
Q Consensus 334 KsAsmrLg~~v~V~SK~~g~~s 355 (726)
|.|++.+|+.+.|+|++.+...
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~ 99 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESF 99 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSS
T ss_pred HHHHHHhcCEEEEEEEECCCCc
Confidence 9999999999999999998754
No 11
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.58 E-value=3.1e-16 Score=125.63 Aligned_cols=45 Identities=44% Similarity=1.005 Sum_probs=31.4
Q ss_pred CceEeCCcchhhccCCCCCCC--CCCCCCceecCCCC--CCCCCCCccc
Q 004865 616 QEWVQCNKCRKWRMLDPGFDT--KSLPVEWFCYMKPF--EGLCDLPEQK 660 (726)
Q Consensus 616 ~~WVQCd~C~KWR~Lp~~~~~--~~lp~~W~C~mnp~--~~sC~~pEe~ 660 (726)
+.|||||.|+|||+||.+++. ..+|+.|+|+||++ +++|++|||.
T Consensus 1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee~ 49 (50)
T PF07496_consen 1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEEI 49 (50)
T ss_dssp -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--SS
T ss_pred CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCCCCCCCCCCCcccC
Confidence 479999999999999999887 78999999999985 6999999985
No 12
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=6.2e-12 Score=134.63 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=97.5
Q ss_pred ceeecCHHHHHHh-cccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhc
Q 004865 235 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF 313 (726)
Q Consensus 235 ~~~~v~p~~L~sl-stsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~f 313 (726)
-+.+++++..+.+ |...+.++..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+++++..++..
T Consensus 2 ~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~~ 74 (312)
T TIGR00585 2 TIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEE-------GGLKLIEVSDNGSGIDKEDLPLACER 74 (312)
T ss_pred cCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCEEEEEEEecCCCCCHHHHHHHhhC
Confidence 3568999999999 445557899999999999999999998888762 23456999999999999999988764
Q ss_pred ccCCCCC-----CCCCccccccceeeeeeeccCCeEEEEEee-CCCCcceEEEeeecCCCccEEEcCcccCCCCcEEEEE
Q 004865 314 GHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (726)
Q Consensus 314 G~S~k~~-----~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~-~g~~s~g~ls~sf~~g~~~viVP~~~~~~~GT~I~l~ 387 (726)
+.+.|.. ......|..|.|+.+.+ .++ +++|.||. .+. ..++.+. . +|. .+.-....-...||.|++.
T Consensus 75 ~~tsk~~~~~~~~~~~~~G~rG~al~si~-~~s-~~~i~S~~~~~~-~~~~~~~-~-~g~-~~~~~~~~~~~~GTtV~v~ 148 (312)
T TIGR00585 75 HATSKIQSFEDLERIETLGFRGEALASIS-SVS-RLTITTKTSAAD-GLAWQAL-L-EGG-MIEEIKPAPRPVGTTVEVR 148 (312)
T ss_pred CCcCCCCChhHhhcccccCccchHHHHHH-hhC-cEEEEEeecCCC-cceEEEE-E-CCC-cCcccccccCCCccEEEEc
Confidence 4433321 23467899999985433 355 89999998 343 3455444 2 332 1111112233579999875
No 13
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.33 E-value=5.2e-12 Score=147.04 Aligned_cols=140 Identities=21% Similarity=0.308 Sum_probs=99.3
Q ss_pred eeecCHHHHHHh-cccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-c
Q 004865 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (726)
Q Consensus 236 ~~~v~p~~L~sl-stsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (726)
+..+++...+.+ |..-+..|.+|++|||+||+||||++|+|.++ ++|...|.|.|||+||+++|+.-++. .
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve-------~gG~~~I~V~DNG~Gi~~~Dl~la~~rH 76 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVE-------GGGLKLIRVRDNGSGIDKEDLPLALLRH 76 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEc-------cCCccEEEEEECCCCCCHHHHHHHHhhh
Confidence 678999999999 45566899999999999999999999999987 67889999999999999999988765 4
Q ss_pred ccCC-CCCCCCCccccccceeee---eeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcccCCCCcEEEEE
Q 004865 314 GHKQ-PDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (726)
Q Consensus 314 G~S~-k~~~d~~~IGqFGvGFKs---AsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~~~~GT~I~l~ 387 (726)
.+|. ...+|...|-.| ||.. +++.-..+++|.||+.+. ..| |+.+.+|..-.+-..+.-...||+|++.
T Consensus 77 aTSKI~~~~DL~~I~Tl--GFRGEAL~SIasVsrlti~Srt~~~-~~~--~~~~~~g~~~~~~~~p~a~~~GTtVeV~ 149 (638)
T COG0323 77 ATSKIASLEDLFRIRTL--GFRGEALASIASVSRLTITSRTAEA-SEG--TQIYAEGGGMEVTVKPAAHPVGTTVEVR 149 (638)
T ss_pred ccccCCchhHHHHhhcc--CccHHHHHHHHhhheeEEEeecCCc-Cce--EEEEecCCcccccccCCCCCCCCEEEeh
Confidence 4442 333444455544 7875 344456899999995543 233 3333344322211112233459998763
No 14
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.19 E-value=1e-10 Score=136.02 Aligned_cols=139 Identities=20% Similarity=0.264 Sum_probs=98.0
Q ss_pred ceeecCHHHHHHh-cccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhc
Q 004865 235 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF 313 (726)
Q Consensus 235 ~~~~v~p~~L~sl-stsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~f 313 (726)
.+-.++++..+.+ |...+..|.++|+|||+||+||+|+.|.|.+. ..+...|+|.|||.||+.+++..++..
T Consensus 2 ~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~-------~~g~~~i~V~DnG~Gi~~~~~~~~~~~ 74 (617)
T PRK00095 2 PIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIE-------EGGLKLIRVRDNGCGISKEDLALALAR 74 (617)
T ss_pred CceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEE-------eCCeEEEEEEEcCCCCCHHHHHHHhhc
Confidence 3578999999999 45566899999999999999999999999986 345679999999999999999988764
Q ss_pred ccCCCCC--CC---CCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCccc-CCCCcEEEEE
Q 004865 314 GHKQPDA--DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY-YRKGQFMELD 387 (726)
Q Consensus 314 G~S~k~~--~d---~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~-~~~GT~I~l~ 387 (726)
..+.|-. ++ ....|..|.|+.+.+ .+ ..++|.||+.+.. .|+ ...|..|.- +..... ...||.|++.
T Consensus 75 ~~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~v-s~l~i~s~~~~~~-~~~-~~~~~~G~~---~~~~~~~~~~GT~V~v~ 147 (617)
T PRK00095 75 HATSKIASLDDLEAIRTLGFRGEALPSIA-SV-SRLTLTSRTADAA-EGW-QIVYEGGEI---VEVKPAAHPVGTTIEVR 147 (617)
T ss_pred cCCCCCCChhHhhccccCCcchhHHHhhh-hc-eEEEEEEecCCCC-ceE-EEEecCCcC---cceecccCCCCCEEEec
Confidence 4443421 12 255677777774433 34 4899999997642 233 223444421 111111 2479999874
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.16 E-value=8e-11 Score=129.69 Aligned_cols=135 Identities=21% Similarity=0.238 Sum_probs=102.5
Q ss_pred cCCHHHHHHHHHHcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCc
Q 004865 252 SGWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNR 325 (726)
Q Consensus 252 ~~~~f~AIaELIDNA~DA~A-----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~ 325 (726)
+..+.++|+|||+||+||.. +.|.|.|+.. +.+...+.|+|||.|++.+++.++|+ +-++++-....+.
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-----~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~Qs 108 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-----GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQS 108 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-----CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhc
Confidence 35678999999999999964 6888888753 56789999999999999999999987 3233332235788
Q ss_pred cccccceeeeee----eccCCeEEEEEeeCCCCcceEEEeeecC-CCccEEEcCcccC----CCCcEEEEEeccc
Q 004865 326 IGRFGVGFKTGA----MRLGKDALVLTQTADSRSIAFLSQSLNQ-GKDNLEIPIVSYY----RKGQFMELDTVVQ 391 (726)
Q Consensus 326 IGqFGvGFKsAs----mrLg~~v~V~SK~~g~~s~g~ls~sf~~-g~~~viVP~~~~~----~~GT~I~l~lk~~ 391 (726)
.||+|+|.+.|. |..|+.+.|+|++.++..+..++-..+. .++..++....++ -+||.|+++++..
T Consensus 109 RGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~ 183 (538)
T COG1389 109 RGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGV 183 (538)
T ss_pred cccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEeccc
Confidence 999999997654 4579999999999987766666655433 3455555553332 3799999998754
No 16
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.95 E-value=1.6e-09 Score=122.06 Aligned_cols=141 Identities=21% Similarity=0.360 Sum_probs=106.6
Q ss_pred ceeecCHHHHHHhc-ccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhh-h
Q 004865 235 NFVRADPSYLQTLG-QAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-Y 312 (726)
Q Consensus 235 ~~~~v~p~~L~sls-tsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~ 312 (726)
.+-+++..++.++| ...+..|..||.|||.||+||++|.|.|.+. ++|...|.|.|||.||.++||.-+. +
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk-------~GGLKLlQisDnG~GI~reDl~ilCeR 79 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVK-------DGGLKLLQISDNGSGIRREDLPILCER 79 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEe-------cCCeEEEEEecCCCccchhhhHHHHHH
Confidence 56789999999994 5566889999999999999999999999876 6788999999999999999997765 4
Q ss_pred cccCC-CCCCCCCccccccceee---eeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcccCCCCcEEEEE
Q 004865 313 FGHKQ-PDADDPNRIGRFGVGFK---TGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (726)
Q Consensus 313 fG~S~-k~~~d~~~IGqFGvGFK---sAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~~~~GT~I~l~ 387 (726)
|.+|. ...+|...|..| ||. .|+++-..+|+|.||.++.... +-.+|.+|.=. .-|.+.--.+||.|++.
T Consensus 80 ftTSKL~kFEDL~~lsTy--GFRGEALASiShVA~VtV~TK~~~~~ca--yrasY~DGkm~-~~pKpcAgk~GT~I~ve 153 (694)
T KOG1979|consen 80 FTTSKLTKFEDLFSLSTY--GFRGEALASISHVAHVTVTTKTAEGKCA--YRASYRDGKMI-ATPKPCAGKQGTIITVE 153 (694)
T ss_pred hhhhhcchhHHHHhhhhc--CccHHHHhhhhheeEEEEEEeecCceee--eEEEeeccccc-cCCCCccCCCceEEEeh
Confidence 77764 334567777777 676 3777788999999999987532 22334343211 12444455679988763
No 17
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.82 E-value=6.8e-09 Score=119.17 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=90.6
Q ss_pred eecCHHHHHHh-cccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhh-hcc
Q 004865 237 VRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFG 314 (726)
Q Consensus 237 ~~v~p~~L~sl-stsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG 314 (726)
-+++++..|.+ |.+.+.++.+|++|||+||+||||+.|.|.++ +.|...|.|.|||.|++..+..-+- ..-
T Consensus 2 k~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~k-------dyG~d~IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 2 KQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVK-------DYGSDSIEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred CCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecC-------CCCcceEEEecCCCCCCccchhhhhhhhh
Confidence 35788888999 45555789999999999999999999999887 5588999999999999998876632 222
Q ss_pred cC-CCCCCCCCccccccceeeeeee-cc--CCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcccCCCCcEEEE
Q 004865 315 HK-QPDADDPNRIGRFGVGFKTGAM-RL--GKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 386 (726)
Q Consensus 315 ~S-~k~~~d~~~IGqFGvGFKsAsm-rL--g~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~~~~GT~I~l 386 (726)
+| .....| ...-+-.||..-++ .| -.+|+|+|++... .+|..|.- +..+.++--.+.-..+||+|.+
T Consensus 75 TSKi~~f~D--l~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~-~vgt~l~~--Dh~G~I~~k~~~ar~~GTTV~v 145 (672)
T KOG1978|consen 75 TSKIVSFAD--LAVLFTLGFRGEALSSLCALGDVMISTRSHSA-KVGTRLVY--DHDGHIIQKKPVARGRGTTVMV 145 (672)
T ss_pred hhcccchhh--hhhhhhhhhHHHHHHhhhhccceEEEEeeccC-ccceeEEE--ccCCceeeeccccCCCCCEEEH
Confidence 22 122222 33344557765333 23 3788888988732 34444432 2233443222223357998864
No 18
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.62 E-value=1.4e-07 Score=110.76 Aligned_cols=129 Identities=21% Similarity=0.264 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccc
Q 004865 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~At-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG 327 (726)
++..+|.|||+||+||.+. .|.|.+.. ......|.|.|||.||+++++.+++. |.++.+-.......|
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG 119 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRG 119 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCC
Confidence 4678999999999999865 46666652 23346899999999999999999986 544433211224568
Q ss_pred cccceeeeeee----ccCCeEEEEEeeCCCCcceE-EEeeecCCC-ccEE--EcCcccC-CCCcEEEEEec
Q 004865 328 RFGVGFKTGAM----RLGKDALVLTQTADSRSIAF-LSQSLNQGK-DNLE--IPIVSYY-RKGQFMELDTV 389 (726)
Q Consensus 328 qFGvGFKsAsm----rLg~~v~V~SK~~g~~s~g~-ls~sf~~g~-~~vi--VP~~~~~-~~GT~I~l~lk 389 (726)
+.|+|+.++.. .-|..+.|.|+..+... |+ +......+. ...+ .....|. .+||.|++.+.
T Consensus 120 ~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~-g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~Lf 189 (795)
T PRK14868 120 QQGIGISAAVLYSQLTSGKPAKITSRTQGSEE-AQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELEME 189 (795)
T ss_pred CCceehHHHHHHHHHcCCCcEEEEeCCCCCCc-eeEEEEEEecCCCccceecceecccCCCCceEEEEEEE
Confidence 89999976543 24788999999876543 43 333333332 2122 1122343 47999988753
No 19
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.61 E-value=1.8e-07 Score=106.06 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcc
Q 004865 253 GWIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 326 (726)
Q Consensus 253 ~~~f~AIaELIDNA~DA~At-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~I 326 (726)
..+..++.|||+||+||.++ .|.|.+... +.+...|+|.|||.||+++++..++. |.++.+........
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccC
Confidence 34668999999999999875 566666521 22235799999999999999999876 44444432234567
Q ss_pred ccccceeeeeee----ccCCeEEEEEeeCCCC
Q 004865 327 GRFGVGFKTGAM----RLGKDALVLTQTADSR 354 (726)
Q Consensus 327 GqFGvGFKsAsm----rLg~~v~V~SK~~g~~ 354 (726)
|.+|+|+.++.+ ..|..+.|.|+..+..
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~ 133 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEI 133 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCce
Confidence 999999976543 2456699999988653
No 20
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.59 E-value=2.8e-07 Score=105.63 Aligned_cols=133 Identities=20% Similarity=0.333 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccc
Q 004865 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IGq 328 (726)
+..+|.|||+||+||.+. .|.|.+... ..+.+...|.|.|||.||+++++..++. |.++.+........|+
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~---~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~ 113 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRV---DEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQ 113 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc---cCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCC
Confidence 578899999999999865 466665421 0123457899999999999999999875 4333332111356799
Q ss_pred ccceeeeeee----ccCCeEEEEEeeCCCCcceEEEeeec-CCCccEEEcCc--c-cCCCCcEEEEEecc
Q 004865 329 FGVGFKTGAM----RLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIV--S-YYRKGQFMELDTVV 390 (726)
Q Consensus 329 FGvGFKsAsm----rLg~~v~V~SK~~g~~s~g~ls~sf~-~g~~~viVP~~--~-~~~~GT~I~l~lk~ 390 (726)
+|+|+.++.+ ..|..+.|.|+..+......+..... ..+...++... . ...+||.|++.+..
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~l~~ 183 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELEIEG 183 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEEECC
Confidence 9999976543 23667999998866531212222111 11122222211 1 22479999988654
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.48 E-value=5.4e-07 Score=105.55 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--------hhh-cccCCCC
Q 004865 253 GWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD 319 (726)
Q Consensus 253 ~~~f~AIaELIDNA~DA----~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~S~k~ 319 (726)
.-+...+.||||||+|+ .++.|.|.|.. + ..|+|.|||.||+.+.... +|. +..+.|-
T Consensus 36 ~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~------d---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf 106 (631)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA------D---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKF 106 (631)
T ss_pred chhhhhhhhhhccccchhhcCCCCEEEEEEeC------C---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCcc
Confidence 45777899999999998 78999999872 1 3899999999999988776 443 1222221
Q ss_pred --CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCc-cc--CCCCcEEEEEe
Q 004865 320 --ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDT 388 (726)
Q Consensus 320 --~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~-~~--~~~GT~I~l~l 388 (726)
..-....|..|+|.++.. .++..++|.|++.+.. +.++|..|.-.-.++.. .. ...||.|++..
T Consensus 107 ~~~~yk~SgGl~GvGls~vN-alS~~l~V~s~r~g~~----~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~P 175 (631)
T PRK05559 107 SNKAYKFSGGLHGVGVSVVN-ALSSRLEVEVKRDGKV----YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWP 175 (631)
T ss_pred CCccccccCcccccchhhhh-hheeeEEEEEEeCCeE----EEEEEECCcCccCccccccccCCCCCcEEEEEE
Confidence 112367899999996444 4889999999986642 45666544211111111 11 45799998755
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.34 E-value=1.3e-06 Score=102.35 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=79.2
Q ss_pred HHHHHHHHHcccc---c-CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH--------HHHhhh-cccCCCC--C
Q 004865 256 FGAIAELVDNSRD---A-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD--A 320 (726)
Q Consensus 256 f~AIaELIDNA~D---A-~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k~--~ 320 (726)
-.+|.||||||+| | .|+.|.|.|.. + ..|+|.|||.||+.++ +.-+|+ .-.+.|- .
T Consensus 32 ~~lv~ElvdNsiDE~~ag~a~~I~V~i~~--------d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~ 102 (625)
T TIGR01055 32 NHLVQEVIDNSVDEALAGFASIIMVILHQ--------D-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNK 102 (625)
T ss_pred ceeehhhhhcccchhhcCCCCEEEEEEeC--------C-CeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCC
Confidence 4469999999999 8 69999999862 2 7899999999999887 555553 1112221 1
Q ss_pred CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCc-cc--CCCCcEEEEEe
Q 004865 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDT 388 (726)
Q Consensus 321 ~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~-~~--~~~GT~I~l~l 388 (726)
.-..+.|..|+|.++.. .++..++|.|++.+.. +.++|..|.-...++.. .. ...||.|++..
T Consensus 103 ~~~~SgG~~GvGls~vn-alS~~l~v~~~r~g~~----~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~P 168 (625)
T TIGR01055 103 NYHFSGGLHGVGISVVN-ALSKRVKIKVYRQGKL----YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTP 168 (625)
T ss_pred cceecCCCcchhHHHHH-HhcCeEEEEEEECCeE----EEEEEECCeEccccccccccCCCCCCeEEEEEE
Confidence 12357889999996443 4889999999987752 45666544211111211 12 24799998754
No 23
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.28 E-value=2.7e-06 Score=99.47 Aligned_cols=94 Identities=26% Similarity=0.269 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccc
Q 004865 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IGq 328 (726)
+.+++.|||+||+||.+. .|.|.+.. .+.+...|.|.|||.||+++++..++. |-.+.|-.......|+
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~-----~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~ 111 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEK-----LGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEE-----CCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCC
Confidence 347899999999999875 57776653 122345699999999999999999886 3333332112356788
Q ss_pred ccceeeeee----eccCCeEEEEEeeCCC
Q 004865 329 FGVGFKTGA----MRLGKDALVLTQTADS 353 (726)
Q Consensus 329 FGvGFKsAs----mrLg~~v~V~SK~~g~ 353 (726)
.|+|+.++. +..|..+.|.|+..+.
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 999997654 2347788999987554
No 24
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.24 E-value=5.1e-06 Score=97.63 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=75.2
Q ss_pred HHHHHHHHHcccc---cC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHH--------Hhhhc-ccCCCC--C
Q 004865 256 FGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTYF-GHKQPD--A 320 (726)
Q Consensus 256 f~AIaELIDNA~D---A~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~f-G~S~k~--~ 320 (726)
...+.|||+||+| |+ |+.|.|.|.. . ..|+|.|||.||+.+.-. .+|+. ..+.+- .
T Consensus 39 ~~~v~ElvdNaiDe~~ag~a~~I~V~i~~-------~--g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~ 109 (638)
T PRK05644 39 HHLVYEIVDNSIDEALAGYCDHIEVTINE-------D--GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGG 109 (638)
T ss_pred HhhhHHhhhcccccccCCCCCEEEEEEeC-------C--CcEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCC
Confidence 3458999999999 98 9999999872 2 389999999999986221 12221 111121 1
Q ss_pred CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcC-cccCCCCcEEEEEe
Q 004865 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELDT 388 (726)
Q Consensus 321 ~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~-~~~~~~GT~I~l~l 388 (726)
.-..+.|..|+|.++.. .++..++|.|++.+. .+.++|..|.-.-.++. ..-...||.|++..
T Consensus 110 ~yk~s~G~~G~Gls~vn-alS~~~~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~~~~~GT~I~F~P 173 (638)
T PRK05644 110 GYKVSGGLHGVGVSVVN-ALSTWLEVEVKRDGK----IYYQEYERGVPVTPLEVIGETDETGTTVTFKP 173 (638)
T ss_pred cccccCCccccchhhhh-heeceEEEEEEeCCc----EEEEEEECCeEccCccccCCcCCCCcEEEEEE
Confidence 12347899999996544 488999999998765 23455544421101111 11235799998643
No 25
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.22 E-value=3.1e-06 Score=98.65 Aligned_cols=115 Identities=22% Similarity=0.281 Sum_probs=73.5
Q ss_pred HHHHHHcccccC----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--------hhh---cccCCCCCCCC
Q 004865 259 IAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQPDADDP 323 (726)
Q Consensus 259 IaELIDNA~DA~----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~---fG~S~k~~~d~ 323 (726)
+.|||+||+||+ |+.|.|.|.. . ..|+|.|||.||+.+.... ++. -|..-....-.
T Consensus 6 v~ElvdNAiD~~~~g~at~I~V~i~~-------~--g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k 76 (594)
T smart00433 6 VDEIVDNAADEALAGYMDTIKVTIDK-------D--NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYK 76 (594)
T ss_pred EeeehhcccchhccCCCCEEEEEEeC-------C--CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCcc
Confidence 789999999997 9999999872 2 3899999999998643221 111 11111111123
Q ss_pred CccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecC-CC--ccEEEcCcccCCCCcEEEEEe
Q 004865 324 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ-GK--DNLEIPIVSYYRKGQFMELDT 388 (726)
Q Consensus 324 ~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~-g~--~~viVP~~~~~~~GT~I~l~l 388 (726)
...|..|+|.++. -.++..++|.|+..+.. +.++|.. |. ....+. ..-...||.|+...
T Consensus 77 ~s~G~~G~Gls~v-nalS~~l~v~~~~~g~~----~~~~~~~~G~~~~~~~~~-~~~~~~GT~V~F~P 138 (594)
T smart00433 77 VSGGLHGVGASVV-NALSTEFEVEVARDGKE----YKQSFSNNGKPLSEPKII-GDTKKDGTKVTFKP 138 (594)
T ss_pred ccCCcccchHHHH-HHhcCceEEEEEeCCcE----EEEEEeCCCeECccceec-CCCCCCCcEEEEEE
Confidence 5789999999544 34889999999998652 4455543 32 111111 11235799998643
No 26
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.21 E-value=6.1e-06 Score=97.29 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcccc---cC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHH--------Hhhh-cccCCC--C
Q 004865 255 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY-FGHKQP--D 319 (726)
Q Consensus 255 ~f~AIaELIDNA~D---A~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~-fG~S~k--~ 319 (726)
+...+.|||+||+| |+ |+.|.|.|.. . ..|+|.|||.||+.+.-. .+++ +..+.+ .
T Consensus 31 l~~vv~Elv~NaiDe~~ag~a~~I~V~i~~-------~--g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~ 101 (654)
T TIGR01059 31 LHHLVYEVVDNSIDEAMAGYCDTINVTIND-------D--GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDK 101 (654)
T ss_pred HHhhhHHhhhccccccccCCCCEEEEEEeC-------C--CcEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCC
Confidence 44569999999999 88 9999999872 2 249999999999975211 1122 111112 1
Q ss_pred CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccE--EEcCcccCCCCcEEEEEec
Q 004865 320 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL--EIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 320 ~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~v--iVP~~~~~~~GT~I~l~lk 389 (726)
..-....|..|+|+++.. .++..++|.|++.+.. +.++|..|.-.- .+. ..-...||.|+....
T Consensus 102 ~~~k~s~G~~G~gl~~in-alS~~l~v~~~~~g~~----~~~~~~~G~~~~~l~~~-~~~~~~GT~V~F~pd 167 (654)
T TIGR01059 102 DSYKVSGGLHGVGVSVVN-ALSEWLEVTVFRDGKI----YRQEFERGIPLGPLEVV-GETKKTGTTVRFWPD 167 (654)
T ss_pred CcceecCCccchhHHHHH-HhcCeEEEEEEECCeE----EEEEEeCCCcccCceec-cCCCCCCcEEEEEEC
Confidence 112357899999996544 4889999999987642 445565443211 111 112357999986543
No 27
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.20 E-value=7.3e-06 Score=97.55 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=76.5
Q ss_pred HHHHHHHHHcccc---cC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH----------HHHHh-hhcccCCCCC
Q 004865 256 FGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ----------DVVRM-TYFGHKQPDA 320 (726)
Q Consensus 256 f~AIaELIDNA~D---A~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e----------eL~~~-l~fG~S~k~~ 320 (726)
--.+.||||||+| |+ ++.|.|.|.. ...|+|.|||.||+.+ |+.-. +.-|.+....
T Consensus 39 hhlv~EivdNaiDE~~AG~a~~I~V~i~~---------dgsIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggKfd~~ 109 (756)
T PRK14939 39 HHMVYEVVDNAIDEALAGHCDDITVTIHA---------DGSVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDQN 109 (756)
T ss_pred hhhhhHhhcccccccccCCCCEEEEEEcC---------CCeEEEEEcCCcccCCcccccCCchhhheeeeecccCCCCCC
Confidence 3458999999999 88 8999999872 2389999999999987 32211 1111111111
Q ss_pred CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEc-CcccCCCCcEEEEEec
Q 004865 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELDTV 389 (726)
Q Consensus 321 ~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP-~~~~~~~GT~I~l~lk 389 (726)
.-.-+-|..|+|.++ .-.++..++|.|++.+.. +.++|..|.-.-.++ ...-...||.|++...
T Consensus 110 ~ykvSgGlhGvG~sv-vNAlS~~l~v~v~r~gk~----~~q~f~~G~~~~~l~~~g~~~~~GT~V~F~PD 174 (756)
T PRK14939 110 SYKVSGGLHGVGVSV-VNALSEWLELTIRRDGKI----HEQEFEHGVPVAPLKVVGETDKTGTEVRFWPS 174 (756)
T ss_pred cccccCCccCccceE-eehccCeEEEEEEeCCeE----EEEEEecCccccCccccCCcCCCCcEEEEEEC
Confidence 113367899999954 445899999999987752 556665543111011 1112357999987543
No 28
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.19 E-value=9.6e-07 Score=79.33 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004865 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..+|.||++||+++... .|.|.+.. ..+...|+|.|||.||+++++..++.-+.+.+. +....+.+|+|
T Consensus 6 l~~il~~ll~Na~~~~~~~~~I~i~~~~------~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~--~~~~~~g~GlG 77 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEGGKIDITIEE------DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK--SETSISGHGLG 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEE------ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS--SSGGSSSSSHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEE------ecCeEEEEEEeccccccccccccchhhcccccc--cccccCCCChH
Confidence 557899999999999765 77777764 346789999999999999999998764333221 34556679999
Q ss_pred eeeeee---ccCCeEEEEEee
Q 004865 333 FKTGAM---RLGKDALVLTQT 350 (726)
Q Consensus 333 FKsAsm---rLg~~v~V~SK~ 350 (726)
|+.+.. .++-++.+.+..
T Consensus 78 L~~~~~~~~~~~g~l~~~~~~ 98 (111)
T PF02518_consen 78 LYIVKQIAERHGGELTIESSE 98 (111)
T ss_dssp HHHHHHHHHHTTEEEEEEEET
T ss_pred HHHHHHHHHHCCCEEEEEEcC
Confidence 975433 245556666553
No 29
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.71 E-value=2.3e-05 Score=90.54 Aligned_cols=138 Identities=17% Similarity=0.261 Sum_probs=82.9
Q ss_pred cCHHHHHHh-cccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccC
Q 004865 239 ADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHK 316 (726)
Q Consensus 239 v~p~~L~sl-stsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S 316 (726)
++..+=+++ |.-.+.++..++.||+-||+||+|+.|.|.+.. ....+.|.|||.||+.++|..+-. +.+|
T Consensus 5 L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~--------~t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 5 LSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNM--------ETFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred cchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecC--------ceeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 444555566 444445778999999999999999999998864 357889999999999999987542 3332
Q ss_pred C-CCCCCCCccccccceeee---eeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCc-ccCCCCcEEEEE
Q 004865 317 Q-PDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SYYRKGQFMELD 387 (726)
Q Consensus 317 ~-k~~~d~~~IGqFGvGFKs---AsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~-~~~~~GT~I~l~ 387 (726)
. ...++...--.| ||.. |+++=-..+.|.|++.+-. .++.-..|..|..-...++. +....||.+++.
T Consensus 77 K~h~~ndl~~~~ty--GfRGeALasIsd~s~l~v~skkk~r~-~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 77 KCHSVNDLENPRTY--GFRGEALASISDMSSLVVISKKKNRT-MKTFVKKFQSGSALKALEIDVTRASSGTTVTVY 149 (1142)
T ss_pred hceecccccccccc--ccchhhhhhhhhhhhhhhhhhhcCCc-hhHHHHHHhccccceecccccccccCCcEEEeH
Confidence 1 112222223334 4443 2232235677888877642 12211122233333344442 233469988764
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.55 E-value=0.00029 Score=83.01 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=71.8
Q ss_pred HHHHHHccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--------hhh---cccCCCCCCCC
Q 004865 259 IAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQPDADDP 323 (726)
Q Consensus 259 IaELIDNA~DA----~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~---fG~S~k~~~d~ 323 (726)
+.|+||||+|. .++.|.|.|.. ...++|.|||.||+.+--.. .|+ -|.+-....-.
T Consensus 39 v~EIvdNavDE~~ag~~~~I~V~i~~---------dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~yk 109 (637)
T TIGR01058 39 VWEIVDNSVDEVLAGYADNITVTLHK---------DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYK 109 (637)
T ss_pred hhhhhcchhhhhhcCCCcEEEEEEcC---------CCeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCccc
Confidence 77999999993 46888888762 35899999999998642111 111 11111111113
Q ss_pred CccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCc---cEEEcCcccCCCCcEEEEEec
Q 004865 324 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD---NLEIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 324 ~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~---~viVP~~~~~~~GT~I~l~lk 389 (726)
-.-|..|+|.+ +.-.++..++|.+++++. .+.++|..|.. .+.+.- .....||.|+....
T Consensus 110 vSGGlhGvG~s-vvNAlS~~~~V~v~r~gk----~~~q~f~~Gg~~~~~l~~~~-~~~~~GT~V~F~PD 172 (637)
T TIGR01058 110 TAGGLHGVGAS-VVNALSSWLEVTVKRDGQ----IYQQRFENGGKIVQSLKKIG-TTKKTGTLVHFHPD 172 (637)
T ss_pred ccCCccccccc-ccceeeceEEEEEEECCE----EEEEEEecCCcCcCCccccc-CCCCCceEEEEEeC
Confidence 45689999995 444589999999987664 45567755421 121111 22357999876654
No 31
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00052 Score=79.63 Aligned_cols=118 Identities=21% Similarity=0.234 Sum_probs=76.4
Q ss_pred HHHHHHccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--------hhh---cccCCCCCCCC
Q 004865 259 IAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQPDADDP 323 (726)
Q Consensus 259 IaELIDNA~DA----~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~---fG~S~k~~~d~ 323 (726)
+.|.||||+|. -++.|.|.|.. ...|+|.|||.||+-+-=.. +|. -|.+-....=.
T Consensus 41 v~EVvDNsiDEalaG~~~~I~V~l~~---------d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~Yk 111 (635)
T COG0187 41 VWEVVDNSIDEALAGYADRIDVTLHE---------DGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYK 111 (635)
T ss_pred EeEeeechHhHHhhCcCcEEEEEEcC---------CCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccE
Confidence 78999999996 36888888762 47899999999998764211 222 12111110112
Q ss_pred CccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCc--cEE-EcCcccCCCCcEEEEEecc
Q 004865 324 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTVV 390 (726)
Q Consensus 324 ~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~--~vi-VP~~~~~~~GT~I~l~lk~ 390 (726)
-+=|..|||. |+.-.|...+.|.+++.+. .+.+.|..|.. .+. +-.+.....||+|+....+
T Consensus 112 vSGGLHGVG~-SVVNALS~~l~v~v~r~gk----~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~ 176 (635)
T COG0187 112 VSGGLHGVGV-SVVNALSTWLEVEVKRDGK----IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDP 176 (635)
T ss_pred eecCCCccce-EEEecccceEEEEEEECCE----EEEEEEeCCCcCCCceecccCCCCCCccEEEEEcCh
Confidence 3457889999 5666799999999999864 45567755432 222 1113344569999876543
No 32
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.30 E-value=0.00046 Score=78.93 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 004865 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGq 328 (726)
...+.+.-|||||+||.+ +.|.+.+.. .++...|.|.|||+||+++....++..|.|.|. -+.
T Consensus 427 ~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~~ 494 (537)
T COG3290 427 DLVTILGNLIDNALEALLAPEENKEIELSLSD------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TGG 494 (537)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CCC
Confidence 567889999999999976 456666653 556788999999999999999999999999874 234
Q ss_pred ccceeee---eeeccCCeEEEEEee
Q 004865 329 FGVGFKT---GAMRLGKDALVLTQT 350 (726)
Q Consensus 329 FGvGFKs---AsmrLg~~v~V~SK~ 350 (726)
-|+|++. ..=++|..++|.+..
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~~ 519 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESEK 519 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeCC
Confidence 4888863 222567777887753
No 33
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.27 E-value=0.00057 Score=58.47 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004865 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..++.||++||+++... .+.|.+.. ..+...+.|.|+|.||+.+++...+..+.+... .....+.+|+|
T Consensus 6 l~~~~~~l~~n~~~~~~~~~~v~i~~~~------~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g 77 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPEGGRITVTLER------DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG--RSRKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC--CCCCCCccccc
Confidence 567899999999999875 56665552 345678999999999999999887764443321 22334567888
Q ss_pred eee
Q 004865 333 FKT 335 (726)
Q Consensus 333 FKs 335 (726)
++.
T Consensus 78 l~~ 80 (111)
T smart00387 78 LSI 80 (111)
T ss_pred HHH
Confidence 864
No 34
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.17 E-value=0.00078 Score=56.66 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=55.1
Q ss_pred HHHHHHHHcccccCC---CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004865 257 GAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 257 ~AIaELIDNA~DA~A---t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
.+++|||+||+++.+ ..+.|.+.. ..+...+.|.|+|.||++..+...+...... ......+.+|+|+
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~~------~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~g~gl 73 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVER------DGDHLEIRVEDNGPGIPEEDLERIFERFSDG---SRSRKGGGTGLGL 73 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---CCCCCCCccccCH
Confidence 579999999999987 445555542 3346788999999999999988876532111 1122345678888
Q ss_pred eeeee---ccCCeEEEEEee
Q 004865 334 KTGAM---RLGKDALVLTQT 350 (726)
Q Consensus 334 KsAsm---rLg~~v~V~SK~ 350 (726)
+.+.- +.+..+.+.+..
T Consensus 74 ~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 74 SIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 64321 245566665543
No 35
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.13 E-value=0.0015 Score=82.31 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHh-------hhccc---CCCC
Q 004865 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM-------TYFGH---KQPD 319 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~-----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~-------l~fG~---S~k~ 319 (726)
+.-.+-|+|+||+|-. .+.|.|.|.. ....|+|.|||.||+-+ ++.- +-||+ +.+-
T Consensus 78 L~kifdEIldNAvDe~~r~g~~~~I~V~I~~--------~~gsIsV~DnGRGIPV~-iH~~eg~~~pElIft~LhAGgkF 148 (1465)
T PLN03237 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDV--------EQNLISVYNNGDGVPVE-IHQEEGVYVPEMIFGHLLTSSNY 148 (1465)
T ss_pred hhhhHHHHhhhhHhHHhhcCCCCEEEEEEEc--------CCCEEEEEecCccccCC-CCCCCCCccceEEEEeeeccccC
Confidence 3455899999999963 3778887762 24689999999999865 2210 01222 2221
Q ss_pred --CCCCCccccccceeeeeeeccCCeEEEEEe
Q 004865 320 --ADDPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (726)
Q Consensus 320 --~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK 349 (726)
..-.-.-|+.|+|.+. .-.+...++|.++
T Consensus 149 dd~~yKvSGGlhGVGasv-vNaLS~~f~Vev~ 179 (1465)
T PLN03237 149 DDNEKKTTGGRNGYGAKL-TNIFSTEFVIETA 179 (1465)
T ss_pred CCCcceeeccccccCccc-cccccCeeEEEEE
Confidence 1124567899999964 4448999999997
No 36
>PRK10604 sensor protein RstB; Provisional
Probab=97.06 E-value=0.0013 Score=73.24 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceee
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFK 334 (726)
+..++..||+||+.+....|.|.+.. .++.-.|.|.|||.||+++++.+.+.-++..... ....-|.+|+|+.
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~------~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~-~~~~~~g~GLGL~ 392 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLL------DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS-RDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEE------ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC-CCCCCCCccchHH
Confidence 55789999999999988888887763 3345789999999999999999988633322110 1122356789985
Q ss_pred ee---eeccCCeEEEEEee
Q 004865 335 TG---AMRLGKDALVLTQT 350 (726)
Q Consensus 335 sA---smrLg~~v~V~SK~ 350 (726)
-+ .-..|.++.|.+..
T Consensus 393 ivk~i~~~~gG~i~v~s~~ 411 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESE 411 (433)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 22 22356677776654
No 37
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=97.02 E-value=0.0017 Score=76.19 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=71.1
Q ss_pred HHHHHHcccccC-------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--h--hh-----ccc---CCCC
Q 004865 259 IAELVDNSRDAK-------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M--TY-----FGH---KQPD 319 (726)
Q Consensus 259 IaELIDNA~DA~-------At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--~--l~-----fG~---S~k~ 319 (726)
+.|+||||+|.. ++.|.|.|. ...++|.|||.||+-+.-.. - +. ||. +.+-
T Consensus 50 ~~EIldNavDe~~~~~~g~~~~I~V~i~----------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkF 119 (602)
T PHA02569 50 IDEIIDNSVDEAIRTNFKFANKIDVTIK----------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNF 119 (602)
T ss_pred eehhhhhhhhhhhccCCCCCcEEEEEEc----------CCEEEEEECCCcccCCcccccccccccceEEEEEeecccccc
Confidence 689999999952 456666654 35899999999997643211 0 11 222 1111
Q ss_pred -CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcccCCCCcEEEEEec
Q 004865 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 320 -~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~~~~GT~I~l~lk 389 (726)
..-.-.-|..|+|.+ +.-.|...+.|.++..+. .+.++|..|.....++...-..+||.|+....
T Consensus 120 d~~ykvSGGlhGVG~s-vvNaLS~~~~V~v~~~~~----~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~PD 185 (602)
T PHA02569 120 DDTNRVTGGMNGVGSS-LTNFFSVLFIGETCDGKN----EVTVNCSNGAENISWSTKPGKGKGTSVTFIPD 185 (602)
T ss_pred CCcceeeCCcCCccce-eeeccchhhheEEEcCCE----EEEEEecCCcccCCcccCCCCCCccEEEEEEC
Confidence 112346789999995 555589999998865543 35677765532222222223357999887654
No 38
>PRK10364 sensor protein ZraS; Provisional
Probab=96.95 E-value=0.0019 Score=71.98 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccc
Q 004865 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGv 331 (726)
.+..++..||+||+++.+ ..|.|.+.. ..+.-.|.|.|||.||+++.+.+++.-+.+.+. +..|+
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-------~g~Gl 414 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASE------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA-------EGTGL 414 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEE------eCCeEEEEEEECCCCCCHHHHHHHhCccccCCC-------CCCcc
Confidence 356779999999999854 456666553 334578999999999999999999876655442 12488
Q ss_pred eeeeee---eccCCeEEEEEee
Q 004865 332 GFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 332 GFKsAs---mrLg~~v~V~SK~ 350 (726)
|++.+- -..|.++.|.+..
T Consensus 415 GL~iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 415 GLAVVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred cHHHHHHHHHHCCCEEEEEeCC
Confidence 885321 1356666666643
No 39
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.88 E-value=0.0023 Score=70.28 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceee
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFK 334 (726)
+..++.+||+||+.++...+.|.+.. ..+...|+|.|||.||+++++.+.+.-.++.... ....-+.+|+|+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-~~~~~~g~GlGL~ 426 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSV------DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA-RDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc-cCCCCCCcchhHH
Confidence 45679999999999988888887763 3345689999999999999999887633322110 1122356788885
Q ss_pred ee---eeccCCeEEEEEee
Q 004865 335 TG---AMRLGKDALVLTQT 350 (726)
Q Consensus 335 sA---smrLg~~v~V~SK~ 350 (726)
.+ ....|.++.+.|..
T Consensus 427 iv~~~v~~~~G~l~~~s~~ 445 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDSP 445 (461)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 32 12355666665543
No 40
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.84 E-value=0.0026 Score=69.69 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceee
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFK 334 (726)
+..++.+||+||+.++...|.|.+.. ..+...|+|.|||.||+++++.+++.-++.... ... -+.+|+|+.
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~-~~g~GlGL~ 402 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGT------EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARG-SSGTGLGLA 402 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEe------cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCC-CCCeehhHH
Confidence 45679999999999988888887763 334567999999999999999998864443211 111 144788875
Q ss_pred eee---eccCCeEEEEEe
Q 004865 335 TGA---MRLGKDALVLTQ 349 (726)
Q Consensus 335 sAs---mrLg~~v~V~SK 349 (726)
-+- -..|.++.+.+.
T Consensus 403 iv~~i~~~~~g~l~i~~~ 420 (435)
T PRK09467 403 IVKRIVDQHNGKVELGNS 420 (435)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 211 124556666554
No 41
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.74 E-value=0.0024 Score=64.62 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCC
Q 004865 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 318 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k 318 (726)
++..++..||+||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++.+...+..+.+.+
T Consensus 228 ~l~~vl~nLi~NAi~~~~~~~i~i~~~~------~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~ 287 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTPGGEITISVRQ------DDEQVTISVEDTGPGIPEEELERIFEPFFRTD 287 (336)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEEe------cCCeEEEEEEcCCCCCCHHHHHHhccCeeccC
Confidence 466789999999999994 777777763 22257899999999999999888876555443
No 42
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.68 E-value=0.0048 Score=67.75 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceee
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFK 334 (726)
+..+|..||+||+.+....-.|.+.... ...+.-.|.|.|||.||+++++.+++.-..+.+. ...-+.+|+|+.
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~---~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~---~~~~~G~GLGL~ 346 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLH---RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR---DEGTEGYGIGLS 346 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEe---cCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC---CCCCCcccccHH
Confidence 4578999999999997644344443210 1234567999999999999999998863332221 112244788885
Q ss_pred ee---eeccCCeEEEEEeeC
Q 004865 335 TG---AMRLGKDALVLTQTA 351 (726)
Q Consensus 335 sA---smrLg~~v~V~SK~~ 351 (726)
.+ .-.+|..+.|.|...
T Consensus 347 i~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 347 VCRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 32 123677777776544
No 43
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.68 E-value=0.0044 Score=69.51 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcccccCC----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccc
Q 004865 255 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFG 330 (726)
+..++.+|++||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++.-+.+.+. +..|
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------~g~G 500 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------SNRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC-------CCCc
Confidence 55789999999999843 345555542 345578899999999999999999875555442 1237
Q ss_pred ceeeeee---eccCCeEEEEEe
Q 004865 331 VGFKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 331 vGFKsAs---mrLg~~v~V~SK 349 (726)
+|+..+- -..|..+.|.|.
T Consensus 501 lGL~iv~~iv~~~~G~i~v~s~ 522 (542)
T PRK11086 501 VGLYLVKQSVENLGGSIAVESE 522 (542)
T ss_pred CcHHHHHHHHHHcCCEEEEEeC
Confidence 8875321 134556666554
No 44
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.67 E-value=0.0026 Score=68.10 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccc
Q 004865 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGv 331 (726)
++..++..||+||+.+.. ..|.|.+.. ..+...|.|.|||.||+++++.+.+.-+..... .-+.+|+
T Consensus 247 ~l~~il~nLi~NA~k~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~Gl 315 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSPEGSTITIKLSQ------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS-----RYGGIGL 315 (356)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC-----CCCCcCH
Confidence 556789999999999864 557776642 345678999999999999999998764332211 1234688
Q ss_pred eeeee---eeccCCeEEEEEeeC
Q 004865 332 GFKTG---AMRLGKDALVLTQTA 351 (726)
Q Consensus 332 GFKsA---smrLg~~v~V~SK~~ 351 (726)
|++.+ .-..|..+.+.|...
T Consensus 316 GL~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 316 GLSIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 88532 123566777766543
No 45
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.67 E-value=0.0046 Score=63.94 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004865 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..++.+||.||+++... .|.|.+.. ..+...|.|.|||.||+++.+.+++......... .....+..|+|
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~------~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~-~~~~~~g~glG 302 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRR------DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS-RSRDTGGTGLG 302 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEE------cCCEEEEEEEecCCCCCHHHHhhhccCceecCcc-cccCCCCCccc
Confidence 567899999999998654 44554442 2345789999999999999999988643322110 01112234788
Q ss_pred eeeeee---ccCCeEEEEEee
Q 004865 333 FKTGAM---RLGKDALVLTQT 350 (726)
Q Consensus 333 FKsAsm---rLg~~v~V~SK~ 350 (726)
++.+-. ..|.++.+.|..
T Consensus 303 L~~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 303 LAIVKHVLSRHHARLEIESEL 323 (333)
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 864221 356677766644
No 46
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.61 E-value=0.0034 Score=68.61 Aligned_cols=87 Identities=21% Similarity=0.230 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcccccCCCc----cEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccc
Q 004865 255 IFGAIAELVDNSRDAKATK----LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~----I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFG 330 (726)
+-.++.+|+.||+++.+.. ..|.+... ...+...|+|.|||.||+++...+.|.-..+.+.. ..+.-|
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~----~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~----~~~G~G 459 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTA----LNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG----SRKHIG 459 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEE----ecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC----CCCCCc
Confidence 4568999999999985432 23333311 14456789999999999999999988633333211 123347
Q ss_pred ceeeeee---eccCCeEEEEEe
Q 004865 331 VGFKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 331 vGFKsAs---mrLg~~v~V~SK 349 (726)
+|++.+- -.+|..+.|.|.
T Consensus 460 lGL~i~~~iv~~~gG~i~~~s~ 481 (494)
T TIGR02938 460 MGLSVAQEIVADHGGIIDLDDD 481 (494)
T ss_pred ccHHHHHHHHHHcCCEEEEEEC
Confidence 7875321 135666766664
No 47
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.60 E-value=0.0037 Score=68.27 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccc
Q 004865 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGv 331 (726)
.+..++.+||+||+++.. ..|.|.+.. ..+...|+|.|||.||+++++.+.+.-++..+.... ..-+..|+
T Consensus 353 ~l~~~~~nll~Nai~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~Gl 425 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTPDGGTITVRIER------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARS-NSGEGTGL 425 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccC-CCCCCccc
Confidence 356789999999999874 356665542 334568999999999999999988763333221111 11234688
Q ss_pred eeeeee---eccCCeEEEEE
Q 004865 332 GFKTGA---MRLGKDALVLT 348 (726)
Q Consensus 332 GFKsAs---mrLg~~v~V~S 348 (726)
|++.+- -++|..+.+.+
T Consensus 426 GL~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 426 GLAIVRSIMEAHGGRASAES 445 (457)
T ss_pred cHHHHHHHHHHCCCEEEEEe
Confidence 885321 12455555554
No 48
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.58 E-value=0.0078 Score=72.93 Aligned_cols=117 Identities=20% Similarity=0.225 Sum_probs=73.4
Q ss_pred HHHHHHcccccC----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--------hhh-------cccCC--
Q 004865 259 IAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-------FGHKQ-- 317 (726)
Q Consensus 259 IaELIDNA~DA~----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-------fG~S~-- 317 (726)
+-|+||||+|.. ++.|.|.|.. ...++|.|||.||+-+.-.+ +|. |+...
T Consensus 134 v~EIlDNSVDE~laG~~~~I~V~i~~---------DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~ 204 (903)
T PTZ00109 134 LFEILDNSVDEYLAGECNKITVVLHK---------DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPK 204 (903)
T ss_pred EEEEeeccchhhccCCCcEEEEEEcC---------CCeEEEEeCCccccccccccCCCcceeEEEEEeccCccccCcccc
Confidence 789999999952 5778887752 35899999999998643221 111 22210
Q ss_pred ----------------C----------------C--CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeee
Q 004865 318 ----------------P----------------D--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSL 363 (726)
Q Consensus 318 ----------------k----------------~--~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf 363 (726)
+ . ..=.-.-|..|||. ++.-.|...+.|.+++.+. .+.++|
T Consensus 205 ~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~-SVVNALS~~l~VeV~RdGK----~y~q~F 279 (903)
T PTZ00109 205 NSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGL-SVVNALSSFLKVDVFKGGK----IYSIEL 279 (903)
T ss_pred cccccccccccccccccccccccccccccccccccCCcceecCcCCCcce-eeeeeccCeEEEEEEECCE----EEEEEe
Confidence 0 0 00024678999999 5556699999999999875 566777
Q ss_pred cCCCc--cEEEcCcccCCCCcEEEEEec
Q 004865 364 NQGKD--NLEIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 364 ~~g~~--~viVP~~~~~~~GT~I~l~lk 389 (726)
..|.- .+.+-...-...||.|+....
T Consensus 280 ~rG~~v~pLkvig~~~~~tGT~VtF~PD 307 (903)
T PTZ00109 280 SKGKVTKPLSVFSCPLKKRGTTIHFLPD 307 (903)
T ss_pred CCCcccCCccccCCcCCCCceEEEEEeC
Confidence 65531 111111111347999876554
No 49
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.52 E-value=0.005 Score=68.10 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHcccccCCCc--cEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccc
Q 004865 254 WIFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~At~--I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGv 331 (726)
.+..++..||+||+++.... |.|.+.. ..+...|+|.|||.||+++++.+++.-.+..+.. .....|..|+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~GL 389 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQR------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA-RSRQTGGSGL 389 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC-CCCCCCCCch
Confidence 35678999999999997543 4444432 3345689999999999999999987633322111 1122244588
Q ss_pred eeeeee---eccCCeEEEEEee
Q 004865 332 GFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 332 GFKsAs---mrLg~~v~V~SK~ 350 (726)
|+..+- -..|..+.|.|..
T Consensus 390 GL~ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 390 GLAIVKHALSHHDSRLEIESEV 411 (430)
T ss_pred HHHHHHHHHHHCCCEEEEEecC
Confidence 885321 1346666666543
No 50
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.36 E-value=0.014 Score=73.88 Aligned_cols=122 Identities=19% Similarity=0.256 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcccccC--------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--h----hhccc---CC
Q 004865 255 IFGAIAELVDNSRDAK--------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQ 317 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~--------At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--~----l~fG~---S~ 317 (726)
+.-.+-|+|+||+|-. ++.|.|.|+. +...|+|.|||.||+-+--.. + +-||+ +.
T Consensus 58 L~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~--------d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGg 129 (1388)
T PTZ00108 58 LYKIFDEILVNAADNKARDKGGHRMTYIKVTIDE--------ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSS 129 (1388)
T ss_pred hhhhHHHHhhhhhhhhcccCCCCCccEEEEEEec--------cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccc
Confidence 3455899999999952 3677887762 346899999999997642111 0 11332 22
Q ss_pred CC--CCCCCccccccceeeeeeeccCCeEEEEEeeC--CCCcceEEEeeecCCCccEEEcCc-cc-C-CCCcEEEEEec
Q 004865 318 PD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA--DSRSIAFLSQSLNQGKDNLEIPIV-SY-Y-RKGQFMELDTV 389 (726)
Q Consensus 318 k~--~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~--g~~s~g~ls~sf~~g~~~viVP~~-~~-~-~~GT~I~l~lk 389 (726)
+- ..-.-.-|+.|+|.+. .-.+...++|.++.. +. .+.++|..|.....-|.. +. . ..||.|+....
T Consensus 130 kfdd~~yKvSGGlhGVGasv-vNalS~~f~Vev~r~~~gk----~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD 203 (1388)
T PTZ00108 130 NYDDTEKRVTGGRNGFGAKL-TNIFSTKFTVECVDSKSGK----KFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPD 203 (1388)
T ss_pred cCCCCceeeecccccCCccc-cccccceEEEEEEECCCCC----EEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeC
Confidence 21 1124567999999964 444899999999987 43 455677555212222221 11 2 57999887654
No 51
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.34 E-value=0.0069 Score=66.87 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004865 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.+..+.. .....|..|+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~-~~~~~~g~GlG 425 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQ------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS-RNRASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC-cCCCCCCCcHH
Confidence 457899999999998654 45565542 3445688999999999999999887532222111 11234556888
Q ss_pred eeee---eeccCCeEEEEEee
Q 004865 333 FKTG---AMRLGKDALVLTQT 350 (726)
Q Consensus 333 FKsA---smrLg~~v~V~SK~ 350 (726)
++.+ .-+.|.++.+.+..
T Consensus 426 L~iv~~i~~~~~G~l~~~s~~ 446 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHSP 446 (466)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 8532 12356666666643
No 52
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.25 E-value=0.0092 Score=74.51 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH----h--hhccc---CCCC-
Q 004865 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFGH---KQPD- 319 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~-----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~----~--l~fG~---S~k~- 319 (726)
+.-.+-|+|+||.|-. ++.|.|.|+. +...|+|.|||.||+-+--.. . +-||. +.+-
T Consensus 53 L~ki~dEIldNAvDe~~~~g~~~~I~V~i~~--------~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFd 124 (1135)
T PLN03128 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDV--------EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFD 124 (1135)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc--------CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccC
Confidence 3445899999999964 2677887762 246999999999998652111 0 01222 2221
Q ss_pred -CCCCCccccccceeeeeeeccCCeEEEEEe--eCCCCcceEEEeeecCCCccEEEcCc-cc--CCCCcEEEEEec
Q 004865 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQ--TADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDTV 389 (726)
Q Consensus 320 -~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK--~~g~~s~g~ls~sf~~g~~~viVP~~-~~--~~~GT~I~l~lk 389 (726)
..-.-.-|..|+|.+. .-.+...++|.++ +.+. .+.++|..|...-..|.. .. ..+||.|+....
T Consensus 125 d~~ykvSGGlhGvGasv-vNaLS~~f~Vev~d~r~gk----~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~PD 195 (1135)
T PLN03128 125 DNEKKTTGGRNGYGAKL-ANIFSTEFTVETADGNRGK----KYKQVFTNNMSVKSEPKITSCKASENWTKITFKPD 195 (1135)
T ss_pred CccceeeccccCCCCeE-EEeecCeEEEEEEECCCCe----EEEEEeCCCcccCCCceeccCCCCCCceEEEEEEC
Confidence 1124567999999964 4448999999998 4342 455777555221112221 11 247999887654
No 53
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.23 E-value=0.0073 Score=68.52 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcccccC------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 004865 255 IFGAIAELVDNSRDAK------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~------At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGq 328 (726)
+...+.+||+||++|. ...|.|.+.. ..+...|.|.|||.||+++++...+.-|++.+.. .-|.
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~----~~~g 502 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD----EPGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC----CCCC
Confidence 4567899999999983 3456666552 3345779999999999999999998766664421 1233
Q ss_pred ccceeeeeee---ccCCeEEEEEe
Q 004865 329 FGVGFKTGAM---RLGKDALVLTQ 349 (726)
Q Consensus 329 FGvGFKsAsm---rLg~~v~V~SK 349 (726)
.|+|++.+-- ..|..+.|.|.
T Consensus 503 ~GlGL~ivk~iv~~~~G~i~v~s~ 526 (545)
T PRK15053 503 HGIGLYLIASYVTRCGGVITLEDN 526 (545)
T ss_pred ceeCHHHHHHHHHHcCCEEEEEEC
Confidence 5888853211 24555555553
No 54
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.20 E-value=0.011 Score=64.71 Aligned_cols=89 Identities=20% Similarity=0.224 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccc
Q 004865 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGv 331 (726)
.+..++.+||.||+.+.. ..|.|.+.. .++...|+|.|||.||+++++.+.+.-+.+.... + ..-+..|+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~-~~~~~~Gl 439 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEV------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-A-NGRKSTGL 439 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-C-CCCCCcch
Confidence 467889999999999864 456666653 3456789999999999999999988644332210 1 11133588
Q ss_pred eeeeee---eccCCeEEEEEee
Q 004865 332 GFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 332 GFKsAs---mrLg~~v~V~SK~ 350 (726)
|++.+- ..+|..+.+.|..
T Consensus 440 GL~i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 440 GLAFVREVARLHGGEVTLRNRP 461 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEEcC
Confidence 886421 1355666666643
No 55
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.16 E-value=0.009 Score=68.11 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceee
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFK 334 (726)
+..++..||+||+++....+.|.+.. ..+.-.|.|.|||.||+++++.+.+.-+..... ..+..|+|+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-----~~~G~GLGL~ 447 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQ------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADT-----LRPGQGLGLS 447 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-----CCCCcchhHH
Confidence 45789999999999988777777653 334568999999999999999988763332211 1123588885
Q ss_pred eee---eccCCeEEEEEe
Q 004865 335 TGA---MRLGKDALVLTQ 349 (726)
Q Consensus 335 sAs---mrLg~~v~V~SK 349 (726)
.+- -..|.++.|.+.
T Consensus 448 Ivk~iv~~~gG~i~v~s~ 465 (485)
T PRK10815 448 VAREITEQYEGKISAGDS 465 (485)
T ss_pred HHHHHHHHcCCEEEEEEC
Confidence 321 124555555553
No 56
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.14 E-value=0.01 Score=66.37 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCc-CEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
+..++.+||+||+.+......|.+.... ..+. ..|.|.|||.||+++++...+..+.+.+. +..|+|+
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~----~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-------~g~glGL 569 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQ----YSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA-------KGTGLGL 569 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEE----cCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC-------CCCchhH
Confidence 5678999999999986554444443211 2223 78999999999999999888764443321 1247777
Q ss_pred eee---eeccCCeEEEEEee
Q 004865 334 KTG---AMRLGKDALVLTQT 350 (726)
Q Consensus 334 KsA---smrLg~~v~V~SK~ 350 (726)
+.+ .-.+|.++.|.|..
T Consensus 570 ~~~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 570 ALSQRIINAHGGDIEVESEP 589 (607)
T ss_pred HHHHHHHHHcCCEEEEEEcC
Confidence 532 11356677776644
No 57
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.12 E-value=0.0084 Score=70.92 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH-HHHhhhcccCCCCCCCCCccccccc
Q 004865 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-VVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee-L~~~l~fG~S~k~~~d~~~IGqFGv 331 (726)
+..++.+||+||+++.. ..|.|.+.. .++...|+|.|||.||+++. ..+.+....+.+. +..|+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GL 646 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVER------ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEE------cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcch
Confidence 45679999999999964 456666653 33567899999999999998 5666654343331 34578
Q ss_pred eeeeee---eccCCeEEEEEee
Q 004865 332 GFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 332 GFKsAs---mrLg~~v~V~SK~ 350 (726)
|++.+- -.+|.++.|.|..
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVESTP 668 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEecC
Confidence 875331 1356667766643
No 58
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=96.07 E-value=0.0088 Score=69.36 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHcccccCC----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccC
Q 004865 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHK 316 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S 316 (726)
.+...+-.||+||+||.+ ..|.|.... ..+.-.|+|.|||.|+.++-+.++|. |-++
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~------~~~~v~l~VrDnGpGi~~e~~~~lFePF~Tt 558 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQR------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTT 558 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------cCCeEEEEEccCCCCCCHHHHHhhcCCcccc
Confidence 367889999999999965 566666653 55678999999999999999999988 4444
No 59
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.72 E-value=0.023 Score=68.58 Aligned_cols=86 Identities=10% Similarity=0.183 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004865 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.+..+. ..|..|+|+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~GLGL 582 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKR------HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT-----HSQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC-----CCCCCchHH
Confidence 55789999999999854 457776653 345678999999999999999998863332221 124468888
Q ss_pred eeee---eccCCeEEEEEeeC
Q 004865 334 KTGA---MRLGKDALVLTQTA 351 (726)
Q Consensus 334 KsAs---mrLg~~v~V~SK~~ 351 (726)
..+- -.+|..+.|.|...
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~ 603 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPG 603 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 5322 13577788877654
No 60
>PRK10337 sensor protein QseC; Provisional
Probab=95.53 E-value=0.025 Score=62.44 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceee
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFK 334 (726)
+..++.+||+||+.+....-.|.+... ...|+|.|||.||+++++.+.+.-++..+. ...+.+|+|+.
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~--------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLN--------ARNFTVRDNGPGVTPEALARIGERFYRPPG----QEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE--------eeEEEEEECCCCCCHHHHHHhcccccCCCC----CCCCccchHHH
Confidence 456799999999998765434444321 137999999999999999988753322111 12244788885
Q ss_pred ee---eeccCCeEEEEEee
Q 004865 335 TG---AMRLGKDALVLTQT 350 (726)
Q Consensus 335 sA---smrLg~~v~V~SK~ 350 (726)
.+ .-+.|.++.+.+..
T Consensus 421 iv~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 32 11346666665543
No 61
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.51 E-value=0.026 Score=67.43 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004865 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
+..++..||+||+++.. ..|.|.+... ..+.-.|.|.|||.||+++++.+++...++.+........|.-|+|+
T Consensus 399 l~qvl~NLl~NAik~~~~g~v~i~~~~~-----~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 399 LRQILWNLISNAVKFTQQGGVTVRVRYE-----EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEc-----cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 55789999999999864 4566666531 23457889999999999999999886333322111222234457777
Q ss_pred eee---eeccCCeEEEEEeeCC
Q 004865 334 KTG---AMRLGKDALVLTQTAD 352 (726)
Q Consensus 334 KsA---smrLg~~v~V~SK~~g 352 (726)
..+ .-..|..+.|.|....
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 422 1236888888886543
No 62
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.30 E-value=0.031 Score=59.46 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcccccC-CCccEEEEEecee--ccCCC----CcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccc
Q 004865 255 IFGAIAELVDNSRDAK-ATKLEISIESIYF--KKAGK----DIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~-At~I~I~I~~~~~--~~~~~----~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG 327 (726)
+..++..||+||+++. .....|.+..... ..... ....|.|.|||.||+++.+.+.+.-+++.+. +
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------~ 310 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------C
Confidence 5678999999999985 3333343321100 00000 1236899999999999998887753333321 1
Q ss_pred cccceeeee---eeccCCeEEEEEee
Q 004865 328 RFGVGFKTG---AMRLGKDALVLTQT 350 (726)
Q Consensus 328 qFGvGFKsA---smrLg~~v~V~SK~ 350 (726)
.-|+|+..+ .-..|.++.|.|..
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 237777422 22356667776643
No 63
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.25 E-value=0.03 Score=67.94 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEeceecc---------CCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCC
Q 004865 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~---------~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~ 323 (726)
+..++..||+||+++.. ..|.|.+....... ..++.-.|.|.|||.||+++++.+++.-.++.+.
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 56789999999999854 45666654310000 0133457899999999999999998864343321
Q ss_pred Cccccccceeeee---eeccCCeEEEEEeeC
Q 004865 324 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (726)
Q Consensus 324 ~~IGqFGvGFKsA---smrLg~~v~V~SK~~ 351 (726)
+..|+|+..+ .-..|.++.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 4458887532 124688888888654
No 64
>PRK09835 sensor kinase CusS; Provisional
Probab=95.12 E-value=0.043 Score=60.81 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccccc
Q 004865 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IGqFG 330 (726)
.+..++.+||+||+.+.. ..|.|.+.. ..+...|.|.|||.||+++++...+. |-+.... ....-+..|
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~------~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~--~~~~~~g~G 446 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQE------VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS--RQRKGEGSG 446 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--CCCCCCCcc
Confidence 356789999999999864 346666542 23456899999999999999998875 3222111 111224468
Q ss_pred ceeeee---eeccCCeEEEEEe
Q 004865 331 VGFKTG---AMRLGKDALVLTQ 349 (726)
Q Consensus 331 vGFKsA---smrLg~~v~V~SK 349 (726)
+|+..+ .-..|.++.|.|.
T Consensus 447 lGL~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 447 IGLAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred hHHHHHHHHHHHCCCEEEEEEC
Confidence 888532 1135666666653
No 65
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.04 E-value=0.052 Score=64.99 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004865 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..++..||+||+++... .|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-+.+.+.. ....-+..|+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~-~~~~~~g~GLG 670 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQ------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ-GAQDQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC-CCCCCCCccHH
Confidence 457799999999998643 45555542 3456779999999999999999988644332211 11112347888
Q ss_pred eeee---eeccCCeEEEEEee
Q 004865 333 FKTG---AMRLGKDALVLTQT 350 (726)
Q Consensus 333 FKsA---smrLg~~v~V~SK~ 350 (726)
++.+ ....|.++.+.+..
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~ 691 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQ 691 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 8643 22356667766654
No 66
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=94.88 E-value=0.049 Score=65.98 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004865 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
+..++..||+||+.+.. ..|.|.+.. ..+...|.|.|||.||+++++.+.+.-.+.... ..|..|+|+
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~GLGL 630 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRT------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSG-----KRGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHhchhhcCCC-----CCCCCcccH
Confidence 55679999999999864 456665542 334567999999999999999998863332211 124568887
Q ss_pred eee---eeccCCeEEEEEeeCC
Q 004865 334 KTG---AMRLGKDALVLTQTAD 352 (726)
Q Consensus 334 KsA---smrLg~~v~V~SK~~g 352 (726)
..+ .-.+|.++.|.|...+
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~~ 652 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPEV 652 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 532 1246888888886543
No 67
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.87 E-value=0.07 Score=49.89 Aligned_cols=81 Identities=20% Similarity=0.145 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 004865 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~-----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGq 328 (726)
.+-.++.||+.||+..+ ...|.|.+.. ..+...|.|.|+|.||+. +.+.+.-..+.+. ..+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~------~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~-----~~~~ 105 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATI------EDHEVYITVRDEGIGIEN--LEEAREPLYTSKP-----ELER 105 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE------eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCC-----CCCC
Confidence 35578999999999753 2456666653 334578899999999973 3344432222211 1123
Q ss_pred ccceeeeeeeccCCeEEEEE
Q 004865 329 FGVGFKTGAMRLGKDALVLT 348 (726)
Q Consensus 329 FGvGFKsAsmrLg~~v~V~S 348 (726)
-|+|+... -+++.++.+.+
T Consensus 106 ~GlGL~lv-~~~~~~l~~~~ 124 (137)
T TIGR01925 106 SGMGFTVM-ENFMDDVSVDS 124 (137)
T ss_pred CcccHHHH-HHhCCcEEEEE
Confidence 57777421 12444555544
No 68
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.68 E-value=0.066 Score=65.17 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCc-CEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccccccc
Q 004865 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IGqFGv 331 (726)
+..++..||+||+.+.. ..|.|.+.. ..+. -.|.|.|+|.||+++++.+.+. |..... ....|..|+
T Consensus 580 l~~il~nLi~NAik~~~~g~i~i~~~~------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~~g~GL 649 (968)
T TIGR02956 580 IRQVLINLVGNAIKFTDRGSVVLRVSL------NDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADG----RRRSGGTGL 649 (968)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEEE------cCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCC----CCCCCCccH
Confidence 55679999999999864 456666653 2233 7899999999999999999886 433221 122245688
Q ss_pred eeeee---eeccCCeEEEEEeeCC
Q 004865 332 GFKTG---AMRLGKDALVLTQTAD 352 (726)
Q Consensus 332 GFKsA---smrLg~~v~V~SK~~g 352 (726)
|+..+ .-.+|.++.|.|....
T Consensus 650 GL~i~~~l~~~~gG~i~~~s~~~~ 673 (968)
T TIGR02956 650 GLAISQRLVEAMDGELGVESELGV 673 (968)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Confidence 88532 1136788888876543
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=94.51 E-value=0.06 Score=66.22 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004865 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..++..||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.++.+. ....+-.|+|
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~---~~~~~G~GLG 849 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHV------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK---ESAIPGVGLG 849 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC---CCCCCCccHH
Confidence 557899999999998654 45555542 334578999999999999999988863332221 1122336778
Q ss_pred eeeee---eccCCeEEEEEee
Q 004865 333 FKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 333 FKsAs---mrLg~~v~V~SK~ 350 (726)
+..+- -..|.++.+.|..
T Consensus 850 L~Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 850 LAICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 75321 1356777776644
No 70
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.45 E-value=0.075 Score=65.63 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccccccce
Q 004865 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IGqFGvG 332 (726)
+..+|..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+. |-..... .....+-.|+|
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~------~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~--~~~~~~GtGLG 634 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRV------DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG--VQRNFQGTGLG 634 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEE------eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC--CCCCCCCeehh
Confidence 45789999999999854 346665542 33456789999999999999999886 3221111 11122345888
Q ss_pred eeeee---eccCCeEEEEEeeC
Q 004865 333 FKTGA---MRLGKDALVLTQTA 351 (726)
Q Consensus 333 FKsAs---mrLg~~v~V~SK~~ 351 (726)
+..+- -..|.++.|.|...
T Consensus 635 L~I~k~lv~~~gG~I~v~S~~g 656 (924)
T PRK10841 635 LAICEKLINMMDGDISVDSEPG 656 (924)
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 75321 23678888888654
No 71
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.40 E-value=0.082 Score=63.16 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=56.0
Q ss_pred HHHHHHHHHcccccCC--------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH------------
Q 004865 256 FGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR------------ 309 (726)
Q Consensus 256 f~AIaELIDNA~DA~A--------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~------------ 309 (726)
..+|..||.||+|++- ..|.|.... ..+.-.|.|.|||.||+++.+.+
T Consensus 387 ~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ 460 (670)
T PRK10547 387 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSEN 460 (670)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCcccc
Confidence 3447799999999862 235555442 33556799999999999987752
Q ss_pred ---------hhhcccCCCCCCCCCccccccceeee---eeeccCCeEEEEEeeC
Q 004865 310 ---------MTYFGHKQPDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTA 351 (726)
Q Consensus 310 ---------~l~fG~S~k~~~d~~~IGqFGvGFKs---AsmrLg~~v~V~SK~~ 351 (726)
.|.-|++.+. ....++-.|+|+.. ..-.+|..+.|.|...
T Consensus 461 ls~~e~~~lIF~pgfst~~--~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g 512 (670)
T PRK10547 461 MSDEEVGMLIFAPGFSTAE--QVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQG 512 (670)
T ss_pred CCHHHHHHHhhcCCccccc--ccccCCCCchhHHHHHHHHHHcCCEEEEEecCC
Confidence 2333454432 11223445888842 2235788888888654
No 72
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=93.82 E-value=0.14 Score=61.88 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccccccce
Q 004865 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IGqFGvG 332 (726)
+..++..||+||+.+.. ..+.|.+.... ...+...-.|.|.|||.||+++++.+.+. |-..... .....|..|+|
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~g~GLG 485 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRA-LSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS--ISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEe-cCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC--CCCCCCCcchh
Confidence 55789999999999854 34555554211 00011135689999999999999998875 3222111 11223556888
Q ss_pred eeee---eeccCCeEEEEEeeCC
Q 004865 333 FKTG---AMRLGKDALVLTQTAD 352 (726)
Q Consensus 333 FKsA---smrLg~~v~V~SK~~g 352 (726)
+.-+ .-.+|.++.|.|....
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~ 508 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNR 508 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCC
Confidence 8532 1236888888886643
No 73
>PRK13557 histidine kinase; Provisional
Probab=93.73 E-value=0.15 Score=57.00 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceec-----------cCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCC
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFK-----------KAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~-----------~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~ 323 (726)
+..++..|+.||+++......|.+...... ...++...|.|.|||.||+++++.+.+...++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 456799999999998654333333211000 00223457999999999999999988864443332
Q ss_pred Cccccccceeeee---eeccCCeEEEEEeeC
Q 004865 324 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (726)
Q Consensus 324 ~~IGqFGvGFKsA---smrLg~~v~V~SK~~ 351 (726)
..+..|+|+..+ .-.+|..+.|.|...
T Consensus 354 -~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 354 -EGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred -CCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 113347777422 224788888887654
No 74
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=93.28 E-value=0.13 Score=50.44 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh
Q 004865 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
+-.|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.||+++.+...+.
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~g~d~~~~~~~~~ 99 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEI------YEDRLEIVVADNGVSFDYETLKSKLG 99 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------ECCEEEEEEEECCcCCChHHhccccC
Confidence 45789999999998864 245555542 34578999999999999888766554
No 75
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.26 E-value=0.11 Score=47.62 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 004865 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~At-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGq 328 (726)
.+.-|+.|++.||+..+.. .|.|.+.. ..+.-.|.|.|+|.|+++..+.....-+. .....|
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~------~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------~~~~~~- 97 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEV------DPDRLRISVRDNGPGFDPEQLPQPDPWEP------DSLREG- 97 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE------cCCEEEEEEEECCCCCChhhccCcccccC------CCCCCC-
Confidence 3567899999999998653 45555442 45678899999999999886544321110 112223
Q ss_pred ccceeeeeeeccCCeEEE
Q 004865 329 FGVGFKTGAMRLGKDALV 346 (726)
Q Consensus 329 FGvGFKsAsmrLg~~v~V 346 (726)
|.|+... -.+.+++.+
T Consensus 98 -G~Gl~li-~~l~D~~~~ 113 (125)
T PF13581_consen 98 -GRGLFLI-RSLMDEVDY 113 (125)
T ss_pred -CcCHHHH-HHHHcEEEE
Confidence 6666422 136777777
No 76
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.25 E-value=0.18 Score=62.14 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004865 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
+..++..||+||+.+.. ..|.|.+... ....+.-.|.|.|+|.||+++++.+.+.-..+.+.. + ..-+--|+|+
T Consensus 566 L~QVL~NLL~NAik~t~~G~I~I~v~~~---~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~-~-~~~~GtGLGL 640 (894)
T PRK10618 566 LRKILLLLLNYAITTTAYGKITLEVDQD---ESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG-D-RYGKASGLTF 640 (894)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEc---cCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCC-C-CCCCCcChhH
Confidence 55779999999999854 3466655421 012245678999999999999999987622222211 1 1112357777
Q ss_pred eee---eeccCCeEEEEEeeCC
Q 004865 334 KTG---AMRLGKDALVLTQTAD 352 (726)
Q Consensus 334 KsA---smrLg~~v~V~SK~~g 352 (726)
..+ .-.+|..+.|.|....
T Consensus 641 aI~k~Lve~~GG~I~v~S~~g~ 662 (894)
T PRK10618 641 FLCNQLCRKLGGHLTIKSREGL 662 (894)
T ss_pred HHHHHHHHHcCCEEEEEECCCC
Confidence 321 1236889999887643
No 77
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.20 E-value=0.094 Score=57.32 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHccccc-CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004865 254 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA-~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
.+|-++.|.|.|++.. .|+.+.|.+.. ..+.-.|.|.|||.|.+.+... | |.|
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~------~~~~l~l~V~DnG~Gf~~~~~~------------------~--~~G 332 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLER------TDDELRLEVIDNGVGFDPDKEG------------------G--GFG 332 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEE------cCCEEEEEEEECCcCCCccccC------------------C--Ccc
Confidence 4788999999999986 68999999874 4456899999999998865321 2 345
Q ss_pred eee---eeeccCCeEEEEEee
Q 004865 333 FKT---GAMRLGKDALVLTQT 350 (726)
Q Consensus 333 FKs---AsmrLg~~v~V~SK~ 350 (726)
+++ =...+|..+.|.|..
T Consensus 333 L~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 333 LLGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred hhhHHHHHHHcCCEEEEEecC
Confidence 432 122378888888866
No 78
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=92.75 E-value=0.25 Score=55.01 Aligned_cols=73 Identities=23% Similarity=0.471 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcccccC----------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCC--CC
Q 004865 255 IFGAIAELVDNSRDAK----------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA--DD 322 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~----------At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~--~d 322 (726)
+.-.+-||..||..|- -+.|.|.+-. +++...+.|.|-|+|++++++..++.|++|.... .+
T Consensus 261 L~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 4456889999999992 1447777653 5567888999999999999999999998876421 11
Q ss_pred ---CCcccccccee
Q 004865 323 ---PNRIGRFGVGF 333 (726)
Q Consensus 323 ---~~~IGqFGvGF 333 (726)
....--||-|+
T Consensus 335 ~~~~~plaGfG~GL 348 (414)
T KOG0787|consen 335 NNRTAPLAGFGFGL 348 (414)
T ss_pred CCCcCcccccccCC
Confidence 23444466665
No 79
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=92.58 E-value=0.25 Score=62.02 Aligned_cols=93 Identities=11% Similarity=0.164 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcccccCCC-ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004865 255 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At-~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
+..++..||+||+++... .+.|.+.... ...+...-.|.|.|||.||+++++.+++...++.+. ...-+..|+|+
T Consensus 829 l~qvl~NLl~NAik~~~~g~i~i~~~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~---~~~~~G~GLGL 904 (1197)
T PRK09959 829 FKQVLSNLLSNALKFTTEGAVKITTSLGH-IDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA---GRQQTGSGLGL 904 (1197)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEee-ecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc---CCCCCCcCchH
Confidence 557899999999999653 3455443210 001112345789999999999999998863332221 11123468888
Q ss_pred eee---eeccCCeEEEEEeeC
Q 004865 334 KTG---AMRLGKDALVLTQTA 351 (726)
Q Consensus 334 KsA---smrLg~~v~V~SK~~ 351 (726)
..+ .-..|.++.|.|...
T Consensus 905 ~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 905 MICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHHcCCEEEEEeCCC
Confidence 532 113678888888654
No 80
>PRK03660 anti-sigma F factor; Provisional
Probab=92.56 E-value=0.34 Score=45.74 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCH
Q 004865 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 304 (726)
.+..++.||+.||+..+. ..|.|.+.. ..+...++|.|+|.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~------~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI------EEEELEITVRDEGKGIED 88 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------CCCEEEEEEEEccCCCCh
Confidence 355789999999997542 345665542 334567899999999985
No 81
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=92.52 E-value=0.18 Score=58.29 Aligned_cols=75 Identities=19% Similarity=0.408 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcccc-cCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004865 255 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~D-A~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
...-++|-+.||+. |.|++|.|.+.. ..+...++|+|||+|++.. ....|.||+-.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~------~~g~~~~~VeDnG~Gi~~~-----------------~e~~gHyGL~I 538 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQ------NDGQVTLTVEDNGVGIDEA-----------------AEPSGHYGLNI 538 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEe------cCCeEEEEEeeCCcCCCCc-----------------cCCCCCcchHH
Confidence 45569999999997 479999998874 4488999999999999864 24567887654
Q ss_pred ee-eeeccCCeEEEEEeeCC
Q 004865 334 KT-GAMRLGKDALVLTQTAD 352 (726)
Q Consensus 334 Ks-AsmrLg~~v~V~SK~~g 352 (726)
-. -+=+++..+.|..+..+
T Consensus 539 M~ERA~~L~~~L~i~~~~~g 558 (574)
T COG3850 539 MRERAQRLGGQLRIRRREGG 558 (574)
T ss_pred HHHHHHHhcCeEEEeecCCC
Confidence 10 01147777777776554
No 82
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=92.48 E-value=0.17 Score=49.66 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 004865 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGq 328 (726)
.+--|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.|++++.+...+........ .+....|
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~-~~~~~~~- 113 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHI------YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEP-IDDLREG- 113 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------eCCEEEEEEEEcccccCchhhccccCCCCCCCC-cccCCCC-
Confidence 355789999999998853 356666553 345678899999999998876654332111110 0111223
Q ss_pred ccceeeeeeeccCCeEEEEE
Q 004865 329 FGVGFKTGAMRLGKDALVLT 348 (726)
Q Consensus 329 FGvGFKsAsmrLg~~v~V~S 348 (726)
|.|++..- .+.+++.+.+
T Consensus 114 -G~GL~Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 114 -GLGLFLIE-TLMDEVEVYE 131 (159)
T ss_pred -ccCHHHHH-HhccEEEEEe
Confidence 77775322 3667777664
No 83
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.87 E-value=0.24 Score=56.93 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004865 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
+..++.|+++||+.+. +..|.|.+.. +++.-.|+|.|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~------~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQ------QDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCEEEEEEEECCCCCCcC
Confidence 5678999999999874 4567776653 3445789999999999865
No 84
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.37 E-value=0.52 Score=56.93 Aligned_cols=105 Identities=22% Similarity=0.332 Sum_probs=68.7
Q ss_pred ceeecCHHHHHHhcccccCCHHHHHHHHHHcccccCC------------CccEEEEEeceeccCCCCcCEEEEEeCCCCC
Q 004865 235 NFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGM 302 (726)
Q Consensus 235 ~~~~v~p~~L~slstsh~~~~f~AIaELIDNA~DA~A------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GM 302 (726)
...-++..+|..++ ..|-.||-||+|.|- ..=.|.+.-. -.++.-.|.|.|||.||
T Consensus 421 ~~telDksIlE~l~--------dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~----~~gn~ivIev~DDG~Gi 488 (716)
T COG0643 421 EDTELDKSILERLG--------DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAY----HEGNNIVIEVSDDGAGI 488 (716)
T ss_pred CCeeehHHHHHHhc--------ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEE----cCCCeEEEEEeeCCCCC
Confidence 34556777776663 237889999999973 1223444321 24567788999999999
Q ss_pred CHHHHHH-hhh-----------------------cccCCCCCCCCCcccccccee---eeeeeccCCeEEEEEeeCCC
Q 004865 303 THQDVVR-MTY-----------------------FGHKQPDADDPNRIGRFGVGF---KTGAMRLGKDALVLTQTADS 353 (726)
Q Consensus 303 t~eeL~~-~l~-----------------------fG~S~k~~~d~~~IGqFGvGF---KsAsmrLg~~v~V~SK~~g~ 353 (726)
+++.+.. ++. .|+|.+. ....+.--|||+ |+..-++|..+.|.|+....
T Consensus 489 d~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~--~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~G 564 (716)
T COG0643 489 DREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAE--QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKG 564 (716)
T ss_pred CHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcch--hhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCC
Confidence 9998753 221 3555542 233344459998 56666799999999977543
No 85
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=90.32 E-value=0.35 Score=55.02 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHcccccCC----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhh
Q 004865 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~A----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (726)
.|--.|-=||+||+-|+. ....|.+... ...+.-.+.|.|||.||+++......
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~----~~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAK----KQDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEE----EcCCEEEEEEeeCCCCCChhHHHHHH
Confidence 466778889999999973 3344544421 13467888999999999998776653
No 86
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.31 E-value=0.28 Score=56.81 Aligned_cols=46 Identities=17% Similarity=0.352 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004865 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
+++.++.|+|+||+.+. +..|.|.+.. ..+...|.|.|||.||+++
T Consensus 469 ~l~~il~ell~NA~kha~a~~i~V~~~~------~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 469 HLLQIAREALSNALKHAQASEVVVTVAQ------NQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCcc
Confidence 36778999999999864 5667777652 3456789999999999875
No 87
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=89.95 E-value=0.18 Score=46.37 Aligned_cols=45 Identities=16% Similarity=0.538 Sum_probs=35.5
Q ss_pred Ccccccc-CC--CCCchhhhHHHHHHHhhcCCeEEEEEece------eEEEEeC
Q 004865 70 SHCFLSP-AP--ECSRDHNEWRRFLIYLQGRDMVAIAKFKF------WEFYILP 114 (726)
Q Consensus 70 ~~~~~~p-~~--~~~~~~~ew~~f~~~l~~~~~~~~~~~~~------~~~~~~~ 114 (726)
-.+++.+ .| .++.+...+.+|..||...+|+|||.++. ..|||+|
T Consensus 66 ~v~v~~~~~~~~~~~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 66 DVCVVALSSPESDSNSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred eEEEEEEcCCcccCHHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 4455555 34 67888999999999999999999999995 8899998
No 88
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.88 E-value=0.85 Score=55.36 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCC
Q 004865 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQ 317 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~ 317 (726)
+..+|..|||||+....+..+|.|.-. ...+.-.+.|.|+|.|++.+++.+.|. |-+..
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~----~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~ 835 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAG----VERENVVFSVIDEGPGIPEGELERIFDKFYRGN 835 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE----EecceEEEEEEeCCCCCChhHHHHhhhhhhcCC
Confidence 346799999999998665444444321 144678899999999999999999986 54433
No 89
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.28 E-value=0.34 Score=53.74 Aligned_cols=71 Identities=17% Similarity=0.368 Sum_probs=50.0
Q ss_pred HHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccccccce
Q 004865 256 FGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 256 f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IGqFGvG 332 (726)
-..|-.+|.||+...- .+|.|.+.. ....-.+.|.|.|.|++++++.+.+. |-+-.+. .....|-=|+|
T Consensus 344 tQVldNii~NA~KYsP~Gg~Itv~~~~------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA--RsR~~gGTGLG 415 (459)
T COG5002 344 TQVLDNIISNALKYSPDGGRITVSVKQ------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA--RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEee------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh--hhhcCCCCchh
Confidence 4567888999998754 566666653 33467889999999999999999985 5443332 23456656777
Q ss_pred ee
Q 004865 333 FK 334 (726)
Q Consensus 333 FK 334 (726)
+.
T Consensus 416 La 417 (459)
T COG5002 416 LA 417 (459)
T ss_pred HH
Confidence 74
No 90
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.09 E-value=0.44 Score=49.54 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=32.6
Q ss_pred HHHHHHHHcccccCC-----CccEEEEEeceeccCCCC-cCEEEEEeCCCCCCHH
Q 004865 257 GAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKD-IPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 257 ~AIaELIDNA~DA~A-----t~I~I~I~~~~~~~~~~~-~~~L~I~DNG~GMt~e 305 (726)
-++.||+.||+..++ ..|.|.+... ..+ ...++|+|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf~~~~~G~I~I~~~~~-----~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAFLSRPGGEIRITLSRE-----GDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-----CCCCeEEEEEEECCCCCCCC
Confidence 569999999999876 3566666531 222 4789999999999754
No 91
>PRK13560 hypothetical protein; Provisional
Probab=88.43 E-value=0.44 Score=56.21 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=31.4
Q ss_pred HHHHHHHHcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004865 257 GAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 257 ~AIaELIDNA~DA~A-----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
..|.+||.||+++.. ..|.|.+.. ...+.-.|+|.|||+||+++
T Consensus 714 ~il~NLl~NAik~~~~~~~~~~i~i~~~~-----~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 714 LIISELLSNALKHAFPDGAAGNIKVEIRE-----QGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEE-----cCCCEEEEEEEeCCCcCCcc
Confidence 367899999999742 345555442 12345789999999999976
No 92
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=86.76 E-value=1.2 Score=43.65 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHcccccCC------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcc
Q 004865 253 GWIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRI 326 (726)
Q Consensus 253 ~~~f~AIaELIDNA~DA~A------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~I 326 (726)
..+-.|+.|++.|++.++- ..|.|.... ..+...++|.|.|.|+. ++...+.-+.... ..-..
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~------~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~---~~~~~ 107 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL------DDGKLEIRIWDQGPGIE--DLEESLGPGDTTA---EGLQE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE------cCCeEEEEEEeCCCCCC--CHHHhcCCCCCCC---ccccc
Confidence 3567899999999998743 234444432 45678999999996654 4455554442221 12233
Q ss_pred ccccceeeeeeeccCCeEEEEEe
Q 004865 327 GRFGVGFKTGAMRLGKDALVLTQ 349 (726)
Q Consensus 327 GqFGvGFKsAsmrLg~~v~V~SK 349 (726)
| |.||. ...++.++|.+...
T Consensus 108 ~--G~Gl~-l~~~~~D~~~~~~~ 127 (146)
T COG2172 108 G--GLGLF-LAKRLMDEFSYERS 127 (146)
T ss_pred c--cccHH-HHhhhheeEEEEec
Confidence 4 66662 23346677777643
No 93
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=86.71 E-value=1.2 Score=51.08 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHcccccCCCc-cEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCC
Q 004865 254 WIFGAIAELVDNSRDAKATK-LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 318 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~At~-I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k 318 (726)
.+...+-.|+-||+||..+. -.|.+... ....+..+|.|.|||.|-+.+-+.+.+...++.|
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~---~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK 626 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIAL---GTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK 626 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEee---cCcccceEEEEecCCCCCchhHHHHhcCCccccc
Confidence 46778999999999997643 34444432 1245678899999999999998888887444444
No 94
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=85.61 E-value=1 Score=53.21 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=38.6
Q ss_pred HHHHHHHHHcccccCCC---------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh
Q 004865 256 FGAIAELVDNSRDAKAT---------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 256 f~AIaELIDNA~DA~At---------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
-.|+..||.||.+|.+. .+.+..+ ..++...+.|.|||.|.+.+..++.+-
T Consensus 602 ~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~------~~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 602 GQVFGNLLKNAAEAIEAVEAEERRTALIRVSLD------DADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHhHHHHhhhcccccCCcceEEEEEe------cCCCeEEEEEecCCCCCChHHhhhhcc
Confidence 46788999999998531 2333333 245678899999999999999999875
No 95
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=79.13 E-value=2.2 Score=48.62 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004865 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
+...+.+|+.||+.+.. ..+.|.+.. ...+.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~-----~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVT-----NPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEE-----cCCCEEEEEEEECCcCcCCC
Confidence 45678999999998643 456665542 12345679999999999863
No 96
>PRK13559 hypothetical protein; Provisional
Probab=78.18 E-value=2.2 Score=45.84 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004865 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
+..++.|||.||+.+++ ..|.|.+... ...+...|.+.|||.|++++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~----~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPS----PEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEec----CCCCeEEEEEECCCCCCCCC
Confidence 45679999999999853 3556555211 23456788899999998654
No 97
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=72.89 E-value=5.1 Score=47.73 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHHHHHHHcccccCC---CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh
Q 004865 256 FGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 256 f~AIaELIDNA~DA~A---t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
-.....||.||+..+. +.|.|..+. ..+..++.|.|||.|++++-+.+.+.
T Consensus 638 ~qv~~NLi~Naik~~~~e~~~i~I~~~r------~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 638 GQVFQNLIANAIKFGGPENPDIEISAER------QEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred HHHHHHHHhhheecCCCCCCceEEeeec------cCCceEEEecCCCCCcCHHHHHHHHH
Confidence 3556889999998864 456776654 34578999999999999999998876
No 99
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=66.90 E-value=10 Score=41.88 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcccccCCC----ccEEEEEece--eccCCC----CcCEEEEEeCCCCCCHHHHHHhhh
Q 004865 255 IFGAIAELVDNSRDAKAT----KLEISIESIY--FKKAGK----DIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At----~I~I~I~~~~--~~~~~~----~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
+..|+-.||.||..|.+. .=.|.+.... ..+..+ -.-.|.|.|||.|++++-....|.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~ 309 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFY 309 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccc
Confidence 568899999999999762 1223332210 000111 134567999999999877666665
No 100
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=64.64 E-value=15 Score=40.99 Aligned_cols=72 Identities=24% Similarity=0.429 Sum_probs=47.3
Q ss_pred HHHHHHccc-ccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceeeee-
Q 004865 259 IAELVDNSR-DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTG- 336 (726)
Q Consensus 259 IaELIDNA~-DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFKsA- 336 (726)
+-|-+.|-- -|+|++|.|-+.. ..+.-.+.|.|||.|++..+..+- ..|+|+.--
T Consensus 364 ~QEaltNIErHa~Atrv~ill~~------~~d~vql~vrDnG~GF~~~~~~~~-----------------~~GiGLRNMr 420 (459)
T COG4564 364 VQEALTNIERHAGATRVTILLQQ------MGDMVQLMVRDNGVGFSVKEALQK-----------------RHGIGLRNMR 420 (459)
T ss_pred HHHHHHHHHhhcCCeEEEEEecc------CCcceEEEEecCCCCccchhhccC-----------------ccccccccHH
Confidence 344444432 3588999998863 567889999999999988765431 147887521
Q ss_pred -ee-ccCCeEEEEEeeCCC
Q 004865 337 -AM-RLGKDALVLTQTADS 353 (726)
Q Consensus 337 -sm-rLg~~v~V~SK~~g~ 353 (726)
-| .+|..++|.|-..|+
T Consensus 421 ERma~~GG~~~v~s~p~GT 439 (459)
T COG4564 421 ERMAHFGGELEVESSPQGT 439 (459)
T ss_pred HHHHHhCceEEEEecCCCc
Confidence 01 267788887755544
No 101
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=51.91 E-value=18 Score=40.94 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHcccc-cCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004865 254 WIFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 254 ~~f~AIaELIDNA~D-A~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
..+...-|++.|-.. |.|+.|+|.+-. +.+.-++.|.|||.|++..
T Consensus 410 TLyRl~QE~LNNI~KHA~AS~V~i~l~~------~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKHADASAVTIQLWQ------QDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhccccceEEEEEee------CCcEEEEEEecCCcCCCCC
Confidence 477888999999875 678999988762 4445899999999998753
No 102
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=38.74 E-value=12 Score=35.38 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=13.9
Q ss_pred chhhhHHHHHHHhhcCC
Q 004865 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 91 ~s~~~WdRFMRFMeRYA 107 (113)
T PRK13610 91 NSEEAFERFMRFASRYA 107 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998775
No 103
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=36.94 E-value=16 Score=34.59 Aligned_cols=17 Identities=24% Similarity=0.821 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004865 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 84 ~s~~~WdRFMRFmeRYA 100 (109)
T TIGR03047 84 KSEDEWDRFMRFMERYA 100 (109)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 104
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=35.76 E-value=14 Score=34.88 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=12.8
Q ss_pred hhhHHHHHHHhhcCC
Q 004865 84 HNEWRRFLIYLQGRD 98 (726)
Q Consensus 84 ~~ew~~f~~~l~~~~ 98 (726)
..+|++||||+.+++
T Consensus 86 ~~~WdRFMRFMeRYA 100 (108)
T PF03912_consen 86 EEEWDRFMRFMERYA 100 (108)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999998764
No 105
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=35.50 E-value=31 Score=40.32 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=32.0
Q ss_pred HHHHHHHcccccCC------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004865 258 AIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 258 AIaELIDNA~DA~A------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
.|-=||.||+..+- -.|.|.+.. .+..-.+.|+|||.|+.++
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~------~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEK------EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEE------eCCeEEEEEecCCCCcCCC
Confidence 37789999998863 356666653 3345899999999999986
No 106
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=34.70 E-value=18 Score=34.26 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004865 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 85 ~s~~~WdRFMRFMeRYA 101 (111)
T PLN00039 85 RSPREWDRFMRFMERYA 101 (111)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 107
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=34.66 E-value=21 Score=28.06 Aligned_cols=34 Identities=24% Similarity=0.742 Sum_probs=22.0
Q ss_pred CCCCceEeCCcchhhccCCC-CCC--C-CCCCCCceec
Q 004865 613 KPDQEWVQCNKCRKWRMLDP-GFD--T-KSLPVEWFCY 646 (726)
Q Consensus 613 ~~~~~WVQCd~C~KWR~Lp~-~~~--~-~~lp~~W~C~ 646 (726)
..+..|||||.|..|--..= +.. . ......|+|.
T Consensus 9 ~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 9 DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc
Confidence 45679999999999976541 111 1 2233489984
No 108
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=33.67 E-value=19 Score=34.18 Aligned_cols=17 Identities=24% Similarity=0.792 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004865 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T PRK13612 87 KSEQEWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 109
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=32.98 E-value=20 Score=33.58 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004865 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 80 ~s~~~wdRFMRFmeRYA 96 (104)
T PRK13611 80 ETEAEWDRFLRFMERFS 96 (104)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35679999999998775
No 110
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=32.49 E-value=21 Score=33.99 Aligned_cols=17 Identities=18% Similarity=0.729 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004865 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T CHL00128 87 KNPEAWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 111
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=27.69 E-value=2.2e+02 Score=35.45 Aligned_cols=45 Identities=20% Similarity=0.449 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcccc-c---CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH
Q 004865 255 IFGAIAELVDNSRD-A---KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (726)
Q Consensus 255 ~f~AIaELIDNA~D-A---~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL 307 (726)
++..+-|++.||.| . .-..+.++|+ .....+.|.+||.|++-+..
T Consensus 54 l~ki~dEilvNaadk~rd~~m~~i~v~i~--------~e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAADKQRDPKMNTIKVTID--------KEKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccccccCCCcceeEEEEc--------cCCCEEEEEeCCCcceeeec
Confidence 45568999999999 1 2245666554 45789999999999987653
No 112
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=27.45 E-value=69 Score=37.41 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCC---CCCHHHHHHhhhcccCCCC------
Q 004865 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGH---GMTHQDVVRMTYFGHKQPD------ 319 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~-----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~---GMt~eeL~~~l~fG~S~k~------ 319 (726)
.|..|+||+|-||+-.. ...|.|++. ...|.|.-.|. ||+++++.+. .|..+
T Consensus 270 yP~~alREai~NAv~HRDYs~~~~~v~I~iy----------dDRieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA~ 335 (467)
T COG2865 270 YPLEALREAIINAVIHRDYSIRGRNVHIEIY----------DDRIEITNPGGLPPGITPEDLLKG----RSKSRNPVLAK 335 (467)
T ss_pred CCHHHHHHHHHHHHHhhccccCCCceEEEEE----------CCeEEEECCCCCCCCCChhHcccC----CCcccCHHHHH
Confidence 47899999999999552 246777665 36899998786 8888877653 22211
Q ss_pred -CCCCCccccccceee
Q 004865 320 -ADDPNRIGRFGVGFK 334 (726)
Q Consensus 320 -~~d~~~IGqFGvGFK 334 (726)
..+...|-++|.|+.
T Consensus 336 ~l~~~~liE~~GSGi~ 351 (467)
T COG2865 336 VLRDMGLIEERGSGIR 351 (467)
T ss_pred HHHHhhhHHHhCccHH
Confidence 124577788999985
No 113
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=26.85 E-value=71 Score=33.41 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=48.8
Q ss_pred ecCCceEEecCC----CcCcccchHHHHHHHH-HH----HHHHHHHhhccCCccc-----------ccccCCCCCCCceE
Q 004865 560 DEGNGLVWVHNN----KQGFLDCEPYARLEEW-LG----KVADEYWDNKFDSLNV-----------VKDGALYKPDQEWV 619 (726)
Q Consensus 560 ~~g~GVVGV~Hn----KQdFe~t~~y~rL~~~-L~----~~l~eYW~~~~~~~~~-----------~~~~~~~~~~~~WV 619 (726)
...+|.|.|.=+ -+|=+.+.+|-++.++ ++ +....+|...--.+.+ ...-+...+...-|
T Consensus 94 r~~~~avRV~~~~e~~~~d~~~~elf~kv~~~~~~~~e~~~~~~~~~~~~~~~~~~~eelFevk~V~v~~pe~a~~~~~v 173 (206)
T COG2191 94 RGSGKAVRVYVKREILDEDPEKTELFPKVRAGYLGPSEIETRKEHWEELEWILLMPDEELFEVKEVDVEPPEKAKKFGSV 173 (206)
T ss_pred cCCCCeEEEEEeccccccChHHHHHHHHHHHhccCccccchhhhhHHHhhhhhhcCchhheeEEEeeccCCcccccccee
Confidence 356677777422 3455799999999998 77 7888898652111111 11112222333449
Q ss_pred eCCcchhhccCCCCCCCCCCCCCceecC
Q 004865 620 QCNKCRKWRMLDPGFDTKSLPVEWFCYM 647 (726)
Q Consensus 620 QCd~C~KWR~Lp~~~~~~~lp~~W~C~m 647 (726)
.|+.|.--=.=+. ...+.++-.|-+
T Consensus 174 ~C~kCGE~~~e~~---~~~~ng~~vC~~ 198 (206)
T COG2191 174 RCSKCGELFMEPR---AVVLNGKPVCKP 198 (206)
T ss_pred eccccCcccccch---hhhcCCceeccc
Confidence 9999985432222 245555666643
No 114
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=26.80 E-value=68 Score=33.78 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=50.5
Q ss_pred CCccccccccccccee---eccCCCccccccCCCCCchhhhHHHHHHHhhcCCeEEEEEeceeE-----EEEeCCC
Q 004865 49 LPHHWNVNDIVPTSKI---ILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWE-----FYILPPD 116 (726)
Q Consensus 49 ~p~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~~~~~~~~-----~~~~~~~ 116 (726)
-+..+.|.+|+|.+-+ -+.+.++++. |.+.......--.-+.+=|...++|||+++-.-. |..|-|.
T Consensus 87 ~~~~l~ilgF~~~~~i~~~~~~~~s~~l~-P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~ 161 (272)
T cd00594 87 TSKGLDILGFVPASEIPPYYFDKESYYLV-PDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQ 161 (272)
T ss_pred CCCeEEEEeEechHhCCcceecCCcEEEE-cCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEecc
Confidence 4567889999999988 3555566666 7775556666778888999999999999986543 6666565
No 115
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=25.12 E-value=33 Score=37.00 Aligned_cols=29 Identities=21% Similarity=0.795 Sum_probs=22.0
Q ss_pred ceEeCCc--ch-hhccCCC-CCCCCCCCCCceec
Q 004865 617 EWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 617 ~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 646 (726)
.-|.||. |- .|=-++= |+. ..-.++|||.
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVGL~-~~PkgkWyC~ 263 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVGLK-TKPKGKWYCP 263 (274)
T ss_pred cccccCCCCCCcceEEEeccccc-cCCCCcccch
Confidence 7799996 99 9988874 333 4556789996
No 116
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=24.82 E-value=80 Score=30.47 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=46.7
Q ss_pred Cccccccccccccee-e--ccCCCccccccCCCC-CchhhhHHHHHHHhhcCCeEEEEEece-----eEEEEeCCC
Q 004865 50 PHHWNVNDIVPTSKI-I--LDGMSHCFLSPAPEC-SRDHNEWRRFLIYLQGRDMVAIAKFKF-----WEFYILPPD 116 (726)
Q Consensus 50 p~~~~~~~~~~~~~~-~--~~~~~~~~~~p~~~~-~~~~~ew~~f~~~l~~~~~~~~~~~~~-----~~~~~~~~~ 116 (726)
+..+.|.+|+|.+-+ . +.++++.+. |.+.. .....--.-+.+=|...++||||++-. -.+-.|-|.
T Consensus 35 ~~~l~ilgF~~~~~i~~~~~~~~s~~i~-P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P~ 109 (140)
T smart00559 35 EPGLELLGFKPLSSLPPYYFLRPSYFLV-PDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRPY 109 (140)
T ss_pred CCeEEEEeecChHHCCHhHccCCcEEEe-eCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEee
Confidence 578899999999988 2 445556666 77753 224445556777789999999999932 456666665
No 117
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=23.60 E-value=46 Score=36.57 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=21.6
Q ss_pred cccceEE---EEEcCeeEe--ecCCceEE--ecCC
Q 004865 544 QMNCGIF---LYWHGRLIE--DEGNGLVW--VHNN 571 (726)
Q Consensus 544 r~~~G~~---VYh~NRLIk--~~g~GVVG--V~Hn 571 (726)
...+|+- +|.+|+|++ +.|.|.+| ||||
T Consensus 107 pKiDGlsisL~Y~~G~L~~a~TRGdG~~GeDVT~n 141 (307)
T cd00114 107 PKIDGLSISLRYENGVLVQAATRGDGTTGEDVTEN 141 (307)
T ss_pred EeccceEEEEEEECCEEEEEEecCCCcchhhHHhh
Confidence 3346776 499999999 89999999 4543
No 118
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=21.06 E-value=91 Score=29.72 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=22.9
Q ss_pred eEEEEEcCeeEe-ecCCc----eEEecCCCcCccc
Q 004865 548 GIFLYWHGRLIE-DEGNG----LVWVHNNKQGFLD 577 (726)
Q Consensus 548 G~~VYh~NRLIk-~~g~G----VVGV~HnKQdFe~ 577 (726)
-+.+|.+|+=|+ +.|.| ..|+.|+||+|-+
T Consensus 71 tfvffkngkh~~~d~gt~~~~k~~~~~~~k~~~id 105 (114)
T cd02986 71 STIFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFID 105 (114)
T ss_pred EEEEEECCcEEEEecCCCCCcEEEEEcCchhHHHH
Confidence 345788888888 55554 7889999999874
No 119
>PF06540 GMAP: Galanin message associated peptide (GMAP); InterPro: IPR013068 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. This domain represents the galanin message-associated peptide (GMAP) domain which is found C-terminal to the galanin domain in the preprogalanin precursor protein. GMAP sequences in different species show a high degree of homology, but the biological function of the GMAP peptide is not known [].
Probab=20.48 E-value=88 Score=26.82 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=24.9
Q ss_pred CCCccccccCCCCCchhhhHHHHHHHhhcCCeEEE
Q 004865 68 GMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAI 102 (726)
Q Consensus 68 ~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~ 102 (726)
+.+=++-+|.| +++-++-=.+||+||+=...=|.
T Consensus 11 ~r~G~~~r~l~-d~nivrTiiEFLtfLhLKEaGAL 44 (62)
T PF06540_consen 11 FRPGSFDRPLA-DDNIVRTIIEFLTFLHLKEAGAL 44 (62)
T ss_pred cccccccCCCc-hhHHHHHHHHHHHHHHHHHhcch
Confidence 34446667888 56778899999999986665443
Done!