Query 004867
Match_columns 726
No_of_seqs 384 out of 2887
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 14:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 5E-124 1E-128 936.8 57.6 599 2-701 37-644 (663)
2 KOG0103 Molecular chaperones H 100.0 2E-114 4E-119 927.0 58.9 665 1-723 1-669 (727)
3 PTZ00009 heat shock 70 kDa pro 100.0 1E-102 2E-107 899.6 74.1 602 1-701 4-615 (653)
4 PRK13410 molecular chaperone D 100.0 1E-101 2E-106 887.1 71.7 605 2-715 3-620 (668)
5 PTZ00400 DnaK-type molecular c 100.0 8E-100 2E-104 874.6 72.3 587 2-700 42-638 (663)
6 PRK13411 molecular chaperone D 100.0 1.8E-99 4E-104 871.4 73.5 588 2-700 3-601 (653)
7 PRK00290 dnaK molecular chaper 100.0 5.5E-98 1E-102 860.7 74.5 586 1-700 1-597 (627)
8 PTZ00186 heat shock 70 kDa pre 100.0 6.8E-98 1E-102 851.2 72.7 588 2-699 28-624 (657)
9 PLN03184 chloroplast Hsp70; Pr 100.0 8.9E-98 2E-102 857.6 72.2 588 2-700 40-636 (673)
10 CHL00094 dnaK heat shock prote 100.0 9.1E-97 2E-101 847.7 73.0 587 2-700 3-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 1.4E-96 3E-101 846.6 73.3 583 2-698 1-593 (595)
12 KOG0101 Molecular chaperones H 100.0 4.4E-97 9E-102 804.5 50.9 601 1-701 7-615 (620)
13 TIGR01991 HscA Fe-S protein as 100.0 2.3E-94 5E-99 822.4 72.9 578 3-699 1-584 (599)
14 KOG0104 Molecular chaperones G 100.0 4.7E-94 1E-98 769.8 60.8 696 1-722 22-759 (902)
15 PRK05183 hscA chaperone protei 100.0 8.6E-93 1.9E-97 810.9 70.9 576 2-699 20-600 (616)
16 PF00012 HSP70: Hsp70 protein; 100.0 2.4E-93 5.2E-98 828.1 64.1 595 3-700 1-602 (602)
17 KOG0102 Molecular chaperones m 100.0 4.6E-90 1E-94 717.5 45.2 591 2-701 28-628 (640)
18 PRK01433 hscA chaperone protei 100.0 2.3E-87 4.9E-92 759.1 68.8 544 2-693 20-572 (595)
19 COG0443 DnaK Molecular chapero 100.0 5.9E-86 1.3E-90 743.0 58.2 566 2-700 6-578 (579)
20 PRK11678 putative chaperone; P 100.0 2.2E-55 4.7E-60 481.7 36.8 337 3-380 2-448 (450)
21 PRK13928 rod shape-determining 100.0 1.1E-38 2.4E-43 342.2 32.4 307 4-380 6-324 (336)
22 PRK13929 rod-share determining 100.0 8.7E-38 1.9E-42 334.2 31.6 305 3-377 6-324 (335)
23 PRK13927 rod shape-determining 100.0 5.2E-35 1.1E-39 314.2 32.7 305 3-379 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 1.4E-34 3.1E-39 310.2 33.2 305 4-379 5-327 (333)
25 PRK13930 rod shape-determining 100.0 1.2E-33 2.6E-38 304.0 32.9 306 4-379 11-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.6E-32 3.6E-37 286.3 20.5 305 3-377 3-319 (326)
27 COG1077 MreB Actin-like ATPase 100.0 3.8E-30 8.3E-35 257.1 26.9 310 2-381 7-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.2E-28 2.7E-33 249.8 22.5 202 113-375 37-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 2.5E-26 5.4E-31 237.1 27.4 202 115-377 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 8.8E-22 1.9E-26 214.4 26.2 194 151-376 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 7.8E-21 1.7E-25 209.3 28.4 195 154-379 169-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 2.3E-16 5E-21 169.1 28.8 205 141-380 159-381 (418)
33 COG4820 EutJ Ethanolamine util 99.7 8.5E-17 1.8E-21 149.4 9.5 197 120-377 76-272 (277)
34 cd00012 ACTIN Actin; An ubiqui 99.7 1.6E-15 3.4E-20 165.6 17.3 236 117-379 76-347 (371)
35 smart00268 ACTIN Actin. ACTIN 99.6 9.8E-15 2.1E-19 159.5 14.1 300 2-379 2-347 (373)
36 PRK13917 plasmid segregation p 99.6 5.5E-13 1.2E-17 142.9 25.2 209 140-382 115-339 (344)
37 PTZ00280 Actin-related protein 99.4 2.7E-11 5.9E-16 133.8 24.8 206 138-356 103-337 (414)
38 PF11104 PilM_2: Type IV pilus 99.3 3.8E-11 8.3E-16 129.2 19.1 182 151-377 136-339 (340)
39 TIGR01175 pilM type IV pilus a 99.3 1.6E-10 3.5E-15 125.1 23.6 165 150-359 142-310 (348)
40 PF00022 Actin: Actin; InterP 99.3 4.4E-11 9.4E-16 131.8 14.4 308 2-380 5-368 (393)
41 TIGR03739 PRTRC_D PRTRC system 99.3 3.7E-10 8E-15 120.4 20.2 208 136-377 101-318 (320)
42 PTZ00281 actin; Provisional 99.2 3.2E-10 6.9E-15 123.6 17.8 218 137-379 101-350 (376)
43 PTZ00452 actin; Provisional 99.2 1.4E-09 2.9E-14 118.4 22.3 214 137-378 100-348 (375)
44 PTZ00004 actin-2; Provisional 99.2 1.2E-09 2.6E-14 119.3 19.3 217 137-378 101-351 (378)
45 PTZ00466 actin-like protein; P 99.1 3.5E-09 7.6E-14 115.3 21.3 217 137-378 106-353 (380)
46 COG4972 PilM Tfp pilus assembl 99.1 6.1E-08 1.3E-12 98.4 25.0 164 153-359 151-315 (354)
47 TIGR00241 CoA_E_activ CoA-subs 98.9 7.3E-08 1.6E-12 98.9 18.1 170 169-376 73-248 (248)
48 PF06406 StbA: StbA protein; 98.8 1.7E-07 3.6E-12 99.8 18.8 173 166-374 141-316 (318)
49 KOG0679 Actin-related protein 98.8 5.7E-07 1.2E-11 92.7 19.7 116 116-245 86-202 (426)
50 COG5277 Actin and related prot 98.6 1.1E-06 2.4E-11 96.5 17.1 98 137-245 106-204 (444)
51 TIGR03192 benz_CoA_bzdQ benzoy 98.6 9.6E-06 2.1E-10 83.3 22.3 47 333-379 241-288 (293)
52 PRK10719 eutA reactivating fac 98.6 3.7E-07 8.1E-12 98.4 11.5 162 139-344 90-268 (475)
53 PF07520 SrfB: Virulence facto 98.5 3.5E-05 7.6E-10 89.9 24.7 267 110-381 415-836 (1002)
54 TIGR03286 methan_mark_15 putat 98.4 2.9E-05 6.3E-10 83.0 21.3 46 333-378 357-402 (404)
55 COG1924 Activator of 2-hydroxy 98.3 9E-05 1.9E-09 77.3 20.9 180 167-379 209-390 (396)
56 TIGR02261 benz_CoA_red_D benzo 98.1 0.00037 8E-09 70.8 20.3 177 170-377 80-262 (262)
57 PF06277 EutA: Ethanolamine ut 97.9 0.00033 7.1E-09 76.0 15.8 88 140-234 88-178 (473)
58 PF08841 DDR: Diol dehydratase 97.8 0.00035 7.7E-09 69.7 12.4 190 161-378 106-330 (332)
59 COG4457 SrfB Uncharacterized p 97.7 0.0035 7.7E-08 69.3 20.7 85 294-380 743-847 (1014)
60 TIGR02259 benz_CoA_red_A benzo 97.4 0.0027 5.8E-08 67.4 14.3 178 169-377 249-432 (432)
61 KOG0676 Actin and related prot 97.4 0.0013 2.9E-08 70.0 11.8 192 138-356 100-315 (372)
62 KOG0797 Actin-related protein 97.0 0.0053 1.1E-07 66.2 11.6 122 110-244 195-322 (618)
63 PRK13317 pantothenate kinase; 97.0 0.018 3.9E-07 59.8 15.2 48 331-378 222-273 (277)
64 KOG0677 Actin-related protein 96.8 0.036 7.7E-07 54.9 14.1 221 137-382 101-364 (389)
65 PF02782 FGGY_C: FGGY family o 96.7 0.0016 3.4E-08 64.3 4.1 75 304-379 121-196 (198)
66 PF01869 BcrAD_BadFG: BadF/Bad 96.4 0.51 1.1E-05 49.0 21.2 70 305-377 197-271 (271)
67 COG1069 AraB Ribulose kinase [ 96.2 0.23 4.9E-06 55.0 17.3 215 154-383 232-482 (544)
68 PLN02669 xylulokinase 96.0 0.017 3.6E-07 66.5 7.9 76 299-379 417-492 (556)
69 PRK15027 xylulokinase; Provisi 96.0 0.015 3.3E-07 66.0 7.3 82 298-383 356-438 (484)
70 TIGR01315 5C_CHO_kinase FGGY-f 96.0 0.016 3.5E-07 66.6 7.6 85 297-382 409-493 (541)
71 KOG0680 Actin-related protein 95.9 0.37 8.1E-06 49.6 15.8 102 137-243 93-198 (400)
72 PF14450 FtsA: Cell division p 95.7 0.018 3.8E-07 51.9 5.2 48 196-243 1-53 (120)
73 COG4819 EutA Ethanolamine util 95.6 0.065 1.4E-06 55.1 9.4 88 140-234 90-180 (473)
74 PRK10854 exopolyphosphatase; P 95.4 0.38 8.2E-06 54.9 15.7 78 152-238 98-176 (513)
75 PRK00047 glpK glycerol kinase; 95.3 0.034 7.4E-07 63.3 7.0 51 331-382 403-453 (498)
76 KOG2517 Ribulose kinase and re 95.2 0.19 4.1E-06 55.9 12.1 71 309-383 395-465 (516)
77 TIGR01312 XylB D-xylulose kina 95.2 0.049 1.1E-06 61.7 8.0 52 331-383 390-441 (481)
78 PRK04123 ribulokinase; Provisi 95.1 0.039 8.6E-07 63.6 7.0 77 299-382 409-489 (548)
79 TIGR02628 fuculo_kin_coli L-fu 95.1 0.039 8.4E-07 62.3 6.7 78 299-382 363-443 (465)
80 TIGR01234 L-ribulokinase L-rib 95.1 0.05 1.1E-06 62.5 7.5 52 331-383 435-487 (536)
81 TIGR01311 glycerol_kin glycero 95.0 0.044 9.5E-07 62.3 6.9 51 331-382 399-449 (493)
82 PF01968 Hydantoinase_A: Hydan 95.0 0.036 7.8E-07 58.2 5.5 67 306-375 216-283 (290)
83 COG0248 GppA Exopolyphosphatas 94.9 0.5 1.1E-05 53.0 14.3 59 152-213 90-148 (492)
84 PTZ00294 glycerol kinase-like 94.9 0.064 1.4E-06 61.2 7.6 51 331-382 406-456 (504)
85 PRK10331 L-fuculokinase; Provi 94.8 0.066 1.4E-06 60.5 7.4 82 298-383 358-440 (470)
86 TIGR00555 panK_eukar pantothen 94.7 0.24 5.3E-06 51.2 10.7 46 330-375 229-278 (279)
87 COG1070 XylB Sugar (pentulose 94.7 0.82 1.8E-05 52.1 15.9 80 298-380 370-449 (502)
88 PLN02295 glycerol kinase 94.6 0.078 1.7E-06 60.6 7.3 52 331-383 412-463 (512)
89 KOG2531 Sugar (pentulose and h 94.6 0.095 2E-06 56.3 7.2 55 324-379 435-489 (545)
90 PF14574 DUF4445: Domain of un 94.5 2.6 5.6E-05 46.3 18.5 59 293-352 290-348 (412)
91 TIGR02627 rhamnulo_kin rhamnul 94.5 0.081 1.7E-06 59.5 7.2 51 331-383 387-437 (454)
92 TIGR01314 gntK_FGGY gluconate 94.5 0.082 1.8E-06 60.3 7.3 52 331-383 401-452 (505)
93 PRK10939 autoinducer-2 (AI-2) 94.2 0.082 1.8E-06 60.5 6.5 51 331-382 409-459 (520)
94 PRK10640 rhaB rhamnulokinase; 94.2 0.089 1.9E-06 59.4 6.7 51 331-383 375-425 (471)
95 COG1548 Predicted transcriptio 93.2 0.29 6.4E-06 48.7 7.3 72 122-212 76-148 (330)
96 PF02541 Ppx-GppA: Ppx/GppA ph 92.8 0.46 1E-05 49.8 8.8 76 154-238 75-151 (285)
97 PRK09604 UGMP family protein; 92.6 7.9 0.00017 41.5 18.1 47 331-377 254-306 (332)
98 KOG0681 Actin-related protein 92.4 1.1 2.3E-05 49.4 10.9 121 116-245 95-216 (645)
99 smart00842 FtsA Cell division 91.8 0.96 2.1E-05 44.1 9.1 29 151-179 157-185 (187)
100 PRK05082 N-acetylmannosamine k 91.5 20 0.00043 37.5 21.5 48 331-378 233-287 (291)
101 COG2192 Predicted carbamoyl tr 91.3 29 0.00064 39.0 21.2 182 193-381 137-337 (555)
102 PRK11031 guanosine pentaphosph 90.9 1.1 2.5E-05 50.8 9.9 78 152-238 93-171 (496)
103 TIGR03706 exo_poly_only exopol 90.1 1.6 3.6E-05 46.0 9.6 111 118-238 54-164 (300)
104 PLN02666 5-oxoprolinase 89.6 3.3 7.1E-05 52.0 12.9 76 298-376 454-531 (1275)
105 PTZ00297 pantothenate kinase; 89.4 27 0.0006 44.9 20.9 47 330-376 1390-1443(1452)
106 TIGR00744 ROK_glcA_fam ROK fam 88.8 13 0.00028 39.4 15.5 71 136-211 57-140 (318)
107 KOG0681 Actin-related protein 88.4 0.38 8.2E-06 52.8 3.2 66 314-379 539-614 (645)
108 PF07318 DUF1464: Protein of u 88.1 8.4 0.00018 40.9 12.8 69 310-383 243-319 (343)
109 PRK14878 UGMP family protein; 87.5 32 0.00069 36.7 17.3 41 331-371 241-287 (323)
110 PRK09585 anmK anhydro-N-acetyl 86.2 6.3 0.00014 42.6 10.9 48 332-379 287-338 (365)
111 PRK09698 D-allose kinase; Prov 85.3 52 0.0011 34.5 23.3 43 163-211 104-146 (302)
112 COG0554 GlpK Glycerol kinase [ 83.4 2.7 5.9E-05 46.1 6.6 81 298-382 371-452 (499)
113 smart00732 YqgFc Likely ribonu 83.2 1 2.3E-05 38.5 2.9 20 1-20 1-20 (99)
114 TIGR03723 bact_gcp putative gl 82.9 45 0.00098 35.4 15.7 44 331-374 259-308 (314)
115 PF03652 UPF0081: Uncharacteri 81.0 1.7 3.6E-05 40.0 3.5 22 1-22 1-22 (135)
116 COG1940 NagC Transcriptional r 81.0 79 0.0017 33.4 19.4 38 163-204 106-143 (314)
117 PTZ00107 hexokinase; Provision 80.9 1E+02 0.0022 34.6 21.0 64 145-211 189-254 (464)
118 PF08735 DUF1786: Putative pyr 79.7 16 0.00035 37.1 10.2 94 134-235 111-206 (254)
119 PLN02920 pantothenate kinase 1 78.9 33 0.00071 37.2 12.8 49 330-378 296-351 (398)
120 COG2377 Predicted molecular ch 78.3 23 0.00051 37.8 11.2 53 328-380 287-344 (371)
121 PF02543 CmcH_NodU: Carbamoylt 76.4 33 0.00071 37.2 12.3 82 296-382 131-216 (360)
122 TIGR03281 methan_mark_12 putat 75.9 14 0.00031 38.4 8.6 85 297-383 222-315 (326)
123 PRK14101 bifunctional glucokin 73.8 1.2E+02 0.0025 35.8 17.0 18 3-20 20-37 (638)
124 COG5026 Hexokinase [Carbohydra 73.3 17 0.00037 39.5 8.8 18 2-19 76-93 (466)
125 COG0533 QRI7 Metal-dependent p 72.9 89 0.0019 33.3 13.8 54 298-356 229-286 (342)
126 KOG1385 Nucleoside phosphatase 72.7 10 0.00022 40.9 6.9 78 110-212 152-231 (453)
127 COG0145 HyuA N-methylhydantoin 70.7 5.7 0.00012 46.5 5.0 42 167-212 255-296 (674)
128 PF03702 UPF0075: Uncharacteri 70.2 9.1 0.0002 41.4 6.1 69 306-379 262-337 (364)
129 PF00370 FGGY_N: FGGY family o 68.5 4.6 9.9E-05 41.1 3.3 19 3-21 2-20 (245)
130 cd06007 R3H_DEXH_helicase R3H 68.0 16 0.00034 28.3 5.3 29 139-167 16-44 (59)
131 PRK00109 Holliday junction res 67.8 5.1 0.00011 36.9 3.1 21 1-21 4-24 (138)
132 PRK09557 fructokinase; Reviewe 67.1 73 0.0016 33.4 12.2 44 163-211 96-139 (301)
133 PF00349 Hexokinase_1: Hexokin 67.0 21 0.00045 35.4 7.5 53 192-246 61-117 (206)
134 COG0816 Predicted endonuclease 66.3 5.8 0.00013 36.6 3.1 21 1-21 2-22 (141)
135 PRK03011 butyrate kinase; Prov 66.1 8.3 0.00018 41.7 4.8 45 331-375 295-343 (358)
136 PRK00976 hypothetical protein; 65.5 35 0.00076 36.1 9.1 50 331-382 263-314 (326)
137 TIGR00329 gcp_kae1 metallohydr 64.4 1.6E+02 0.0035 31.1 14.1 37 314-355 246-282 (305)
138 PRK09605 bifunctional UGMP fam 62.7 2.8E+02 0.0062 31.8 19.9 51 331-381 245-301 (535)
139 KOG2708 Predicted metalloprote 61.3 95 0.0021 30.9 10.4 63 309-376 237-301 (336)
140 TIGR00143 hypF [NiFe] hydrogen 60.3 19 0.00042 42.7 6.7 48 331-378 658-711 (711)
141 PLN02362 hexokinase 60.2 99 0.0021 35.2 12.0 61 143-210 198-260 (509)
142 PLN02914 hexokinase 60.2 1.7E+02 0.0036 33.2 13.7 65 142-213 197-263 (490)
143 cd02640 R3H_NRF R3H domain of 59.5 30 0.00064 26.8 5.5 39 128-167 7-45 (60)
144 PF14450 FtsA: Cell division p 59.0 14 0.0003 33.1 4.2 20 3-22 1-20 (120)
145 COG4296 Uncharacterized protei 57.9 24 0.00052 31.6 5.2 23 663-685 90-112 (156)
146 TIGR03123 one_C_unchar_1 proba 57.4 7.6 0.00017 41.1 2.5 51 300-358 247-301 (318)
147 PRK00039 ruvC Holliday junctio 57.0 9.2 0.0002 36.4 2.8 20 1-20 2-21 (164)
148 PTZ00294 glycerol kinase-like 56.5 8.8 0.00019 43.8 3.1 20 3-22 4-23 (504)
149 COG1070 XylB Sugar (pentulose 55.8 12 0.00026 42.7 4.0 21 2-22 5-25 (502)
150 PRK07058 acetate kinase; Provi 55.6 1.2E+02 0.0027 33.0 11.3 47 306-356 297-344 (396)
151 COG4012 Uncharacterized protei 55.5 66 0.0014 32.7 8.4 89 143-245 185-276 (342)
152 PRK02224 chromosome segregatio 55.2 1.1E+02 0.0023 37.7 12.4 71 597-668 145-215 (880)
153 PRK10331 L-fuculokinase; Provi 53.9 10 0.00022 42.8 3.0 19 3-21 4-22 (470)
154 PLN02405 hexokinase 53.7 89 0.0019 35.4 10.3 58 149-213 204-263 (497)
155 TIGR02628 fuculo_kin_coli L-fu 52.5 11 0.00024 42.5 3.0 20 2-21 2-21 (465)
156 KOG0678 Actin-related protein 52.2 2.5E+02 0.0054 29.7 12.1 99 139-244 108-209 (415)
157 cd00529 RuvC_resolvase Hollida 52.0 97 0.0021 29.0 8.9 30 195-224 1-30 (154)
158 PLN02939 transferase, transfer 52.0 1.7E+02 0.0038 35.8 12.8 124 598-721 237-366 (977)
159 PF14574 DUF4445: Domain of un 50.4 90 0.0019 34.5 9.4 47 303-349 55-101 (412)
160 PRK10939 autoinducer-2 (AI-2) 50.2 12 0.00027 42.8 3.0 20 3-22 5-24 (520)
161 COG1521 Pantothenate kinase ty 50.0 1.2E+02 0.0026 31.0 9.6 45 300-344 181-225 (251)
162 PRK15027 xylulokinase; Provisi 49.8 12 0.00027 42.4 2.9 19 3-21 2-20 (484)
163 PRK13318 pantothenate kinase; 48.8 18 0.00038 37.3 3.6 20 3-22 2-21 (258)
164 TIGR03722 arch_KAE1 universal 48.0 3.7E+02 0.008 28.6 19.3 42 331-372 242-289 (322)
165 PRK13321 pantothenate kinase; 47.6 19 0.0004 37.1 3.5 19 3-21 2-20 (256)
166 COG3426 Butyrate kinase [Energ 47.6 44 0.00096 34.3 5.9 47 329-375 294-344 (358)
167 TIGR01314 gntK_FGGY gluconate 47.5 16 0.00034 41.7 3.3 19 3-21 2-20 (505)
168 PLN02295 glycerol kinase 46.9 15 0.00032 42.1 2.9 19 3-21 2-20 (512)
169 COG2441 Predicted butyrate kin 46.9 1.6E+02 0.0034 30.4 9.6 54 330-383 272-336 (374)
170 TIGR01234 L-ribulokinase L-rib 46.8 18 0.00039 41.6 3.7 17 3-19 3-19 (536)
171 TIGR01315 5C_CHO_kinase FGGY-f 46.5 17 0.00037 41.8 3.4 19 3-21 2-20 (541)
172 PTZ00340 O-sialoglycoprotein e 45.8 4.2E+02 0.009 28.6 18.1 39 312-355 249-287 (345)
173 PLN02377 3-ketoacyl-CoA syntha 45.5 42 0.00091 38.0 6.1 56 303-358 165-221 (502)
174 PRK04123 ribulokinase; Provisi 44.5 20 0.00044 41.3 3.6 17 3-19 5-21 (548)
175 PF08006 DUF1700: Protein of u 44.3 56 0.0012 31.5 6.2 60 631-698 4-64 (181)
176 PRK13317 pantothenate kinase; 44.1 26 0.00057 36.4 4.0 20 2-21 3-22 (277)
177 cd02641 R3H_Smubp-2_like R3H d 44.1 65 0.0014 24.9 5.2 29 139-167 17-45 (60)
178 TIGR01311 glycerol_kin glycero 44.0 17 0.00038 41.2 2.9 19 3-21 3-21 (493)
179 cd00529 RuvC_resolvase Hollida 43.4 19 0.00041 33.8 2.6 17 3-19 2-18 (154)
180 PRK00047 glpK glycerol kinase; 43.3 20 0.00044 40.7 3.3 19 3-21 7-25 (498)
181 cd02646 R3H_G-patch R3H domain 43.2 56 0.0012 25.0 4.7 41 124-167 3-43 (58)
182 PF04614 Pex19: Pex19 protein 42.3 1.2E+02 0.0027 30.9 8.5 65 628-700 122-187 (248)
183 PLN02902 pantothenate kinase 42.1 1.6E+02 0.0034 35.5 10.2 48 330-378 345-400 (876)
184 cd02639 R3H_RRM R3H domain of 41.2 48 0.001 25.7 4.0 30 139-168 17-46 (60)
185 TIGR03185 DNA_S_dndD DNA sulfu 41.2 4.3E+02 0.0093 31.2 14.0 92 597-694 369-461 (650)
186 TIGR02259 benz_CoA_red_A benzo 40.3 24 0.00051 38.3 3.0 20 3-22 4-23 (432)
187 PLN02596 hexokinase-like 39.4 1.3E+02 0.0028 34.0 8.8 58 150-214 205-264 (490)
188 PF04848 Pox_A22: Poxvirus A22 38.5 46 0.00099 30.8 4.2 20 1-20 1-20 (143)
189 KOG0994 Extracellular matrix g 38.1 6.3E+02 0.014 31.6 13.9 15 627-641 1470-1484(1758)
190 KOG0797 Actin-related protein 37.6 15 0.00032 40.7 1.0 50 332-381 527-591 (618)
191 KOG1369 Hexokinase [Carbohydra 37.5 6.4E+02 0.014 28.4 14.6 66 142-214 183-251 (474)
192 PRK00409 recombination and DNA 37.3 4E+02 0.0087 32.3 13.0 114 597-720 498-621 (782)
193 KOG3133 40 kDa farnesylated pr 36.5 1.5E+02 0.0033 30.2 7.7 62 628-696 142-203 (267)
194 PLN03173 chalcone synthase; Pr 36.2 1.2E+02 0.0026 33.3 7.8 50 309-358 101-151 (391)
195 TIGR01069 mutS2 MutS2 family p 35.1 5.1E+02 0.011 31.3 13.4 45 597-641 493-538 (771)
196 PF07765 KIP1: KIP1-like prote 34.2 2E+02 0.0043 23.3 6.5 24 700-723 48-71 (74)
197 PF00349 Hexokinase_1: Hexokin 33.7 39 0.00085 33.5 3.2 38 145-182 163-203 (206)
198 TIGR00250 RNAse_H_YqgF RNAse H 33.4 28 0.0006 31.7 1.9 17 4-20 1-17 (130)
199 PF02801 Ketoacyl-synt_C: Beta 33.3 57 0.0012 28.9 4.0 49 309-357 22-72 (119)
200 PLN03170 chalcone synthase; Pr 33.1 1.1E+02 0.0025 33.6 7.1 50 309-358 105-155 (401)
201 TIGR02707 butyr_kinase butyrat 32.9 44 0.00095 36.1 3.7 44 331-374 293-340 (351)
202 PLN02669 xylulokinase 32.7 38 0.00083 39.1 3.4 20 2-21 9-28 (556)
203 PRK13331 pantothenate kinase; 32.2 47 0.001 33.9 3.6 22 1-22 7-28 (251)
204 PRK03918 chromosome segregatio 32.1 6.1E+02 0.013 31.1 14.0 46 648-695 655-700 (880)
205 PF11802 CENP-K: Centromere-as 32.0 4E+02 0.0087 27.4 10.0 63 650-722 108-170 (268)
206 PLN03172 chalcone synthase fam 31.5 1.4E+02 0.0029 32.9 7.3 51 308-358 100-151 (393)
207 PRK09557 fructokinase; Reviewe 31.2 75 0.0016 33.3 5.1 47 331-377 244-299 (301)
208 PF13941 MutL: MutL protein 31.1 51 0.0011 36.8 3.9 26 2-27 1-28 (457)
209 PHA02557 22 prohead core prote 31.1 3.5E+02 0.0076 27.7 9.2 82 602-696 142-224 (271)
210 PLN02854 3-ketoacyl-CoA syntha 30.6 1E+02 0.0022 35.1 6.1 48 311-358 189-237 (521)
211 PF02075 RuvC: Crossover junct 30.6 26 0.00055 32.8 1.2 18 3-20 1-18 (149)
212 PF11593 Med3: Mediator comple 30.5 63 0.0014 34.4 4.1 42 660-703 9-50 (379)
213 PRK00292 glk glucokinase; Prov 30.5 46 0.00099 35.3 3.3 49 162-211 89-144 (316)
214 KOG0103 Molecular chaperones H 30.4 1.4E+02 0.0031 34.7 7.1 63 626-697 653-725 (727)
215 PRK10869 recombination and rep 30.1 9.1E+02 0.02 27.9 14.5 65 602-669 245-313 (553)
216 PF02970 TBCA: Tubulin binding 29.8 1.8E+02 0.004 24.5 6.2 34 648-681 55-88 (90)
217 PLN03168 chalcone synthase; Pr 29.7 1.5E+02 0.0032 32.5 7.2 52 307-358 98-150 (389)
218 PF09304 Cortex-I_coil: Cortex 29.7 2.2E+02 0.0049 24.8 6.6 65 622-696 6-72 (107)
219 PRK13326 pantothenate kinase; 29.6 55 0.0012 33.8 3.6 21 2-22 7-27 (262)
220 PF02075 RuvC: Crossover junct 29.5 2.9E+02 0.0063 25.7 8.2 29 196-224 1-29 (149)
221 COG4012 Uncharacterized protei 29.5 1.6E+02 0.0034 30.1 6.4 72 195-273 2-96 (342)
222 PRK13310 N-acetyl-D-glucosamin 29.3 1.4E+02 0.0029 31.4 6.7 44 163-211 96-139 (303)
223 PRK10869 recombination and rep 29.2 5.3E+02 0.011 29.8 11.9 124 599-723 203-358 (553)
224 PF06008 Laminin_I: Laminin Do 28.9 6.5E+02 0.014 25.8 12.0 15 597-611 119-133 (264)
225 COG5026 Hexokinase [Carbohydra 28.9 62 0.0013 35.4 3.9 30 192-221 73-103 (466)
226 PF08392 FAE1_CUT1_RppA: FAE1/ 28.5 1.4E+02 0.0031 31.1 6.3 46 313-358 86-132 (290)
227 KOG1794 N-Acetylglucosamine ki 28.4 1.4E+02 0.0031 31.0 6.1 51 333-383 265-320 (336)
228 KOG1369 Hexokinase [Carbohydra 28.1 2.6E+02 0.0055 31.4 8.5 26 192-217 84-109 (474)
229 TIGR00067 glut_race glutamate 27.0 1.2E+02 0.0026 31.0 5.6 41 331-374 172-212 (251)
230 PRK13324 pantothenate kinase; 26.9 65 0.0014 33.1 3.6 20 3-22 2-21 (258)
231 PRK00039 ruvC Holliday junctio 26.6 5.6E+02 0.012 24.3 10.3 148 195-381 3-156 (164)
232 PF09286 Pro-kuma_activ: Pro-k 26.2 1E+02 0.0022 28.3 4.5 47 627-673 26-76 (143)
233 PRK13320 pantothenate kinase; 26.2 71 0.0015 32.6 3.7 21 2-22 3-23 (244)
234 TIGR01319 glmL_fam conserved h 26.2 58 0.0013 36.2 3.2 62 150-211 193-266 (463)
235 PF13941 MutL: MutL protein 24.6 1.8E+02 0.0038 32.6 6.6 46 196-241 2-48 (457)
236 PLN00130 succinate dehydrogena 24.6 10 0.00022 35.7 -2.4 18 3-20 59-76 (213)
237 TIGR00634 recN DNA repair prot 24.4 1.1E+03 0.025 27.1 14.2 64 602-670 252-319 (563)
238 PF15290 Syntaphilin: Golgi-lo 24.1 7.5E+02 0.016 25.6 10.1 19 681-699 123-141 (305)
239 COG1940 NagC Transcriptional r 24.0 3.1E+02 0.0066 28.8 8.3 53 192-244 4-56 (314)
240 KOG0994 Extracellular matrix g 24.0 8.2E+02 0.018 30.6 11.8 18 653-670 1469-1486(1758)
241 PRK00865 glutamate racemase; P 24.0 1.5E+02 0.0032 30.5 5.6 42 331-375 177-218 (261)
242 PF00480 ROK: ROK family; Int 23.9 2.9E+02 0.0062 26.1 7.4 88 113-211 31-134 (179)
243 PF15188 CCDC-167: Coiled-coil 23.6 3.8E+02 0.0083 22.4 6.7 35 646-689 30-64 (85)
244 PTZ00107 hexokinase; Provision 23.3 2.9E+02 0.0063 31.1 8.0 25 192-216 72-96 (464)
245 PLN02404 6,7-dimethyl-8-ribity 22.8 63 0.0014 29.9 2.2 75 291-377 5-79 (141)
246 PRK00180 acetate kinase A/prop 21.9 1.9E+02 0.004 31.9 6.0 48 306-356 301-349 (402)
247 KOG2517 Ribulose kinase and re 21.8 77 0.0017 35.8 3.1 17 3-19 8-24 (516)
248 PF12401 DUF3662: Protein of u 21.8 4.6E+02 0.01 23.2 7.6 83 240-331 10-95 (116)
249 PLN02192 3-ketoacyl-CoA syntha 21.6 2.2E+02 0.0048 32.4 6.7 56 303-358 169-225 (511)
250 PF10458 Val_tRNA-synt_C: Valy 21.5 3.5E+02 0.0075 21.2 6.0 49 620-668 6-55 (66)
251 PLN02914 hexokinase 21.5 2.2E+02 0.0047 32.3 6.6 24 193-216 94-117 (490)
252 KOG1029 Endocytic adaptor prot 21.3 7E+02 0.015 29.7 10.3 42 652-695 416-457 (1118)
253 TIGR02627 rhamnulo_kin rhamnul 21.3 47 0.001 37.3 1.4 17 4-20 1-17 (454)
254 KOG3433 Protein involved in me 21.2 6E+02 0.013 24.5 8.2 29 692-720 102-130 (203)
255 PF01150 GDA1_CD39: GDA1/CD39 21.1 1.1E+02 0.0024 34.1 4.3 21 193-213 163-183 (434)
256 TIGR01312 XylB D-xylulose kina 20.9 54 0.0012 37.0 1.8 18 4-21 1-18 (481)
257 PRK07515 3-oxoacyl-(acyl carri 20.8 92 0.002 33.9 3.5 48 307-356 266-313 (372)
258 COG0533 QRI7 Metal-dependent p 20.8 2.1E+02 0.0046 30.5 5.9 44 306-349 46-89 (342)
259 smart00732 YqgFc Likely ribonu 20.6 2.6E+02 0.0057 23.3 5.7 22 195-216 2-23 (99)
260 PRK12879 3-oxoacyl-(acyl carri 20.6 2.1E+02 0.0044 30.2 6.1 48 308-358 221-268 (325)
261 COG0497 RecN ATPase involved i 20.5 1.3E+03 0.029 26.5 12.4 130 597-726 201-362 (557)
262 TIGR02168 SMC_prok_B chromosom 20.2 7.5E+02 0.016 31.2 12.1 45 597-641 151-195 (1179)
263 PLN02362 hexokinase 20.2 2.8E+02 0.0061 31.6 7.2 25 192-216 93-117 (509)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-124 Score=936.78 Aligned_cols=599 Identities=31% Similarity=0.563 Sum_probs=570.9
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~~ 81 (726)
+|||||||||||||+++++|.++|+.|++|+|.+||+|+|.+++|++|++|+++...||.||+++.|||||+.++++.+|
T Consensus 37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq 116 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQ 116 (663)
T ss_pred eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCceEEeCCCCceEEEEEEc-CceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 82 RDLKSLPFAVTEGPDGYPLIHARYL-GETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
.++++|||+++.. ++.+.++|... |+.+.|+|+++++|+|.++++.|+.++|..+.++|+||||||++.||+++++|.
T Consensus 117 ~Dik~~Pfkvv~k-~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAG 195 (663)
T KOG0100|consen 117 KDIKFLPFKVVNK-DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 195 (663)
T ss_pred hhhhcCceEEEcC-CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccc
Confidence 9999999999976 78889999876 778999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
.+|||+++++||||+|||++||+++.+ ...++||||+||||||+|++.+.+|.|+|+++.||.+|||.|||+++++
T Consensus 196 tIAgLnV~RIiNePTaAAIAYGLDKk~----gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 196 TIAGLNVVRIINEPTAAAIAYGLDKKD----GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVME 271 (663)
T ss_pred eeccceEEEeecCccHHHHHhcccccC----CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHH
Confidence 999999999999999999999998875 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEK 320 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~ 320 (726)
|+...++++++.+++.+.+++.+|+++||++|+.||++.++.+.|+++++|.||+-++||..||++..+++.+...++++
T Consensus 272 ~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~k 351 (663)
T KOG0100|consen 272 YFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQK 351 (663)
T ss_pred HHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHc-CCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecccce
Q 004867 321 ALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF-GKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSI 399 (726)
Q Consensus 321 ~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f-g~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 399 (726)
+|+.+++++.+|+.|+||||++|||.||++|+++| |+++++.+|||||||+|||.+|..+|+.....++++.|++|+++
T Consensus 352 vl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLtl 431 (663)
T KOG0100|consen 352 VLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTL 431 (663)
T ss_pred HHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeeccccc
Confidence 99999999999999999999999999999999999 79999999999999999999999999998899999999999999
Q ss_pred EEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeeccc----EEEEEEEeccccC-CCCcceeeEEECCCCCCC
Q 004867 400 SLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQSTK 474 (726)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~i~~~~i~~~~~~~ 474 (726)
||++.+| .+..||||||.+|++|+..|++..| .+|.+ |+|++++ .+|..+|+|.++||||++
T Consensus 432 GIETvGG------------VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~v-yEGER~mtkdn~lLGkFdltGipPAP 498 (663)
T KOG0100|consen 432 GIETVGG------------VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQV-YEGERPMTKDNHLLGKFDLTGIPPAP 498 (663)
T ss_pred eeeeecc------------eeeccccCCcccCccccceeeecccCCceEEEEE-eeccccccccccccccccccCCCCCC
Confidence 9999987 7899999999999999988887543 45555 8999999 999999999999999999
Q ss_pred cccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCCCC
Q 004867 475 SERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTT 554 (726)
Q Consensus 475 ~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (726)
.|.++|+|+|.+|.||||+|++. |
T Consensus 499 RGvpqIEVtFevDangiL~VsAe-------------------------D------------------------------- 522 (663)
T KOG0100|consen 499 RGVPQIEVTFEVDANGILQVSAE-------------------------D------------------------------- 522 (663)
T ss_pred CCCccEEEEEEEccCceEEEEee-------------------------c-------------------------------
Confidence 99999999999999999999983 2
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHH
Q 004867 555 DAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYV 634 (726)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~i 634 (726)
|.++++..|.|++.. ..||+++|++|++++++++++|+..+++.++||.||+|.
T Consensus 523 -------------------------Kgtg~~~kitItNd~-~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~Ya 576 (663)
T KOG0100|consen 523 -------------------------KGTGKKEKITITNDK-GRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYA 576 (663)
T ss_pred -------------------------cCCCCcceEEEecCC-CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHH
Confidence 333445567887765 579999999999999999999999999999999999999
Q ss_pred HHHHHHhhh--hhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004867 635 YDMRNKLCD--KYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEF 701 (726)
Q Consensus 635 y~~r~~l~~--~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 701 (726)
|++++.+.+ .+...+++++++.+...+++..+||+.+ .+|++++|.+|+++|..+++||....+..
T Consensus 577 yslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 577 YSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999964 4889999999999999999999999998 99999999999999999999999988764
No 2
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-114 Score=926.98 Aligned_cols=665 Identities=59% Similarity=0.912 Sum_probs=621.1
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
|+|+|||||..+|.+|+++.+++++|.|+.|+|.||++|+|...+|++|.+|.++..+|+.|++..+||++|+.|+||.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
+.+.+++|+.++.++||.+++.+.|.|+.+.+++++|++|+|.+|+..|+..+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCC--CCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPEN--DQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~--~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l 238 (726)
++|||++++|++|.+|+|++||++++++|.. ++.+|+++|||++++.+|++.|..|.++++++.+|.++||++||..|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 9999999999999999999999999999843 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHH
Q 004867 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPL 318 (726)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i 318 (726)
.+|++.+|+.+|++++..+++++.||+..||++|+.||+|...+++|++++++.|++..|+|++||++|.|+++|+..++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecccc
Q 004867 319 EKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFS 398 (726)
Q Consensus 319 ~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~ 398 (726)
..+|++++++.+||+.|.+|||+||+|.|++.|.++||+++.+++|.+||||+|||++||++||.||+|+|.++|+.||+
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pys 400 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYS 400 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecccEEEEEEEeccccC-CCCcceeeEEECCCCCCCc-c
Q 004867 399 ISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSEL-RAPAKISTYTIGPFQSTKS-E 476 (726)
Q Consensus 399 i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~~~i~~~y~~~~~~-~~~~~i~~~~i~~~~~~~~-~ 476 (726)
|.+.|..... |......+||+|.++|.+|.+||++.++|++.++|.+...+ .....|++|+++++.+... +
T Consensus 401 Is~~w~~~~e-------d~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge 473 (727)
T KOG0103|consen 401 ISLRWVKQGE-------DGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGE 473 (727)
T ss_pred EEEEeccccc-------cCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCCCCCceeeEEecccccCcccc
Confidence 9999987521 22356899999999999999999999999999999988777 5777899999999998755 6
Q ss_pred cceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCCCCCC
Q 004867 477 RAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTDA 556 (726)
Q Consensus 477 ~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (726)
..+|+|+.++|.+||++|..+.++++.++++ ++... ++.+.+. .
T Consensus 474 ~skVKvkvr~n~~Gi~~i~sA~~~e~~~vee-v~~~~------~e~~~~~---------------------------~-- 517 (727)
T KOG0103|consen 474 FSKVKVKVRLNEHGIDTIESATLIEDIEVEE-VPEEP------MEYDDAA---------------------------K-- 517 (727)
T ss_pred ccceeEEEEEcCccceeeecceeecccchhc-cccch------hhhhcch---------------------------h--
Confidence 7899999999999999999999999887765 44211 0001000 0
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHHHH
Q 004867 557 PGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYD 636 (726)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~ 636 (726)
+.+ .....+.|+++++++|++.....++|++.+++..++++.+|..+|+...++.++||+||+|||+
T Consensus 518 -~~~------------~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~ 584 (727)
T KOG0103|consen 518 -MLE------------RIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYD 584 (727)
T ss_pred -hhh------------hhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHH
Confidence 000 0000012566788999999888778999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcccHHHHHHHHHHHH
Q 004867 637 MRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCIN 716 (726)
Q Consensus 637 ~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~rp~~~~~~~~~~~ 716 (726)
||++|.+.|.+|++++++++|...|+++++|||++|++.++..|..||.+|+++++ ..|+.++..||++++.+.+.|+
T Consensus 585 ~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~e~~~r~k~~d~~~~~i~ 662 (727)
T KOG0103|consen 585 MRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFDENEERPKAFDELGKKIQ 662 (727)
T ss_pred HHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHh
Q 004867 717 SYREAAL 723 (726)
Q Consensus 717 ~~~~~~~ 723 (726)
..+..++
T Consensus 663 ~~r~~~~ 669 (727)
T KOG0103|consen 663 EIRKAIE 669 (727)
T ss_pred HHHHHHH
Confidence 9988754
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1e-102 Score=899.56 Aligned_cols=602 Identities=31% Similarity=0.541 Sum_probs=553.4
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
+++||||||||||+||++++++++++.|..|+|.+||+|+|.+++++||..|..+..++|.++++++||+||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
+...+.+||.++..++|...+.+.+.++.+.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999998899999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
++|||++++|++||+|||++|++.+.. ..+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~---~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKG---DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccC---CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 999999999999999999999986532 13678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-ccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHH
Q 004867 241 HFAAKFKEEY-KIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLE 319 (726)
Q Consensus 241 ~l~~~~~~~~-~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (726)
|+.++|..++ +.++..+++++.||+.+||++|+.||.+..+.+.+++++++.++.++|||++|+++|+|+++++..+|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~ 320 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877 477888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcC-CCCCCCCCchhhhhcchHHHHHHhCCC--CcccceEEeeecc
Q 004867 320 KALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPT--FKVREFQVNESFP 396 (726)
Q Consensus 320 ~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg-~~v~~~~n~~eaVa~GAa~~aa~ls~~--~~~~~~~~~d~~~ 396 (726)
++|+.++++..+|+.|+||||+||+|+|+++|+++|+ ..+..++|||+|||+|||++|+++++. ++++++.+.|++|
T Consensus 321 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p 400 (653)
T PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTP 400 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecc
Confidence 9999999999999999999999999999999999996 678899999999999999999999975 7788999999999
Q ss_pred cceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecc----cEEEEEEEeccccC-CCCcceeeEEECCCC
Q 004867 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (726)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~i~~~~i~~~~ 471 (726)
++||++..++ .+.+||++|++||++++.+|.+.. .+.|.++ +++... .+|..||+|.|.+++
T Consensus 401 ~slgi~~~~~------------~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~-ege~~~~~~n~~lg~~~i~~i~ 467 (653)
T PTZ00009 401 LSLGLETAGG------------VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVF-EGERAMTKDNNLLGKFHLDGIP 467 (653)
T ss_pred cccCccccCC------------ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEE-ecccccCCCCceEEEEEEcCCC
Confidence 9999987654 578999999999999999886543 3778884 566555 889999999999999
Q ss_pred CCCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCC
Q 004867 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (726)
Q Consensus 472 ~~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (726)
+.+.+.+.|+|+|++|.||+|+|++.+
T Consensus 468 ~~~~g~~~i~v~f~id~~Gil~v~~~~----------------------------------------------------- 494 (653)
T PTZ00009 468 PAPRGVPQIEVTFDIDANGILNVSAED----------------------------------------------------- 494 (653)
T ss_pred CCCCCCceEEEEEEECCCCeEEEEEec-----------------------------------------------------
Confidence 888777899999999999999999741
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHH
Q 004867 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (726)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (726)
+.+.+...++|... ..+|+.++++++++++.+|..+|+.++++.++||+||
T Consensus 495 ----------------------------~~t~~~~~~~i~~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lE 545 (653)
T PTZ00009 495 ----------------------------KSTGKSNKITITND-KGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLE 545 (653)
T ss_pred ----------------------------ccCCceeeEEEeec-cccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhH
Confidence 00011234455433 2479999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004867 632 AYVYDMRNKLC-DKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEF 701 (726)
Q Consensus 632 s~iy~~r~~l~-~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 701 (726)
+|||.+|++|. ++|..++++++|++|.+.|+++++|||+ ++++++++|++|+++|+++++||..|++..
T Consensus 546 s~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~ 615 (653)
T PTZ00009 546 NYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK-NQLAEKEEFEHKQKEVESVCNPIMTKMYQA 615 (653)
T ss_pred HHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999996 4599999999999999999999999995 588999999999999999999999997643
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=9.8e-102 Score=887.11 Aligned_cols=605 Identities=26% Similarity=0.460 Sum_probs=546.5
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcC-CceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
.+||||||||||+||++.+|.+.++.|..|.|.+||+|+|.. +++++|..|+.++..+|.++++++||+||+++.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~ 80 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--L 80 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--h
Confidence 489999999999999999999999999999999999999974 6899999999999999999999999999999865 4
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
+.....+||.+...++|.+.+.+...+ +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 556678999999988898887765443 789999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
++|||++++||+||+|||++|++.+. .+.++|||||||||||+||+++.++.++|+++.|+.++||++||.+|++
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~~-----~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~ 233 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDRS-----SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVD 233 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhccccC-----CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHH
Confidence 99999999999999999999987643 3688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCC----cceEEEeCHHHHHHHHhHHHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (726)
|+.++|..++++++..+++++.+|+.+||++|+.||.+..+.+.++.++.+ .++...|||++|+++|+++++++..
T Consensus 234 ~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~ 313 (668)
T PRK13410 234 WLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLR 313 (668)
T ss_pred HHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999999998999999999999999999999999999999877643 4688999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecc
Q 004867 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (726)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (726)
+|+++|+.+++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++. ++++.+.|++|
T Consensus 314 ~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~Dv~p 391 (668)
T PRK13410 314 PVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLDVTP 391 (668)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEeecc
Confidence 9999999999999999999999999999999999999999888999999999999999999999884 57899999999
Q ss_pred cceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecc----cEEEEEEEeccccC-CCCcceeeEEECCCC
Q 004867 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (726)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~i~~~~i~~~~ 471 (726)
++||+++.++ .+.+|||+|++||++++.+|.+.. .+.+.+ |+|+..+ .+|..||+|.|.++|
T Consensus 392 ~slgie~~~g------------~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v-~qGe~~~~~~n~~lg~~~l~~i~ 458 (668)
T PRK13410 392 LSLGLETIGG------------VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHV-WQGEREMASDNKSLGRFKLSGIP 458 (668)
T ss_pred ccccceecCC------------eeEEEEeCCCcccccccccceeccCCCcEEEEEE-EeeccccccCCceEEEEEEeCCC
Confidence 9999998875 688999999999999999887643 355555 5666666 889999999999999
Q ss_pred CCCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCC
Q 004867 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (726)
Q Consensus 472 ~~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (726)
+.+.+.++|+|+|++|.||+|+|++..
T Consensus 459 ~~~~g~~~I~v~f~id~nGiL~V~a~d----------------------------------------------------- 485 (668)
T PRK13410 459 PAPRGVPQVQVAFDIDANGILQVSATD----------------------------------------------------- 485 (668)
T ss_pred CCCCCCCeEEEEEEECCCcEEEEEEEE-----------------------------------------------------
Confidence 998888999999999999999999851
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHH
Q 004867 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (726)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (726)
+.++++..++|... .+|+.++++++++++.+|..+|+.++++.++||+||
T Consensus 486 ----------------------------~~tg~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e 535 (668)
T PRK13410 486 ----------------------------RTTGREQSVTIQGA--STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRAL 535 (668)
T ss_pred ----------------------------cCCCceeeeeeccc--ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 00011233445433 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh---hhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcccHHHH
Q 004867 632 AYVYDMRNKLCD---KYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVI 708 (726)
Q Consensus 632 s~iy~~r~~l~~---~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~rp~~~ 708 (726)
+|||.+|++|.+ .|..++++++|++|..+|+++++|||+++.+..++.|.++++.|+.++.||..|+.| .-..-+
T Consensus 536 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~ 613 (668)
T PRK13410 536 TLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE--EDEGPL 613 (668)
T ss_pred HHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchh
Confidence 999999999964 588999999999999999999999999988899999999999999999999999999 333334
Q ss_pred HHHHHHH
Q 004867 709 DQLAYCI 715 (726)
Q Consensus 709 ~~~~~~~ 715 (726)
..+++.+
T Consensus 614 ~~~~~~~ 620 (668)
T PRK13410 614 QGIKNTF 620 (668)
T ss_pred hhHHhhc
Confidence 4444443
No 5
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=7.9e-100 Score=874.56 Aligned_cols=587 Identities=27% Similarity=0.489 Sum_probs=538.0
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcC-CceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
++||||||||||+||++.+++++++.|..|+|.+||+|+|.+ +++++|..|..+..++|.++++++|||||+.++++.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 589999999999999999999999999999999999999975 5789999999999999999999999999999999999
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
+...+.+||.++..++|.+.+.+. + +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~--~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQ--G--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 999999999999988888776653 3 689999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
++|||++++||+||+|||++|++... .+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~~-----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~ 272 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDKN-----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILN 272 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhccccC-----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHH
Confidence 99999999999999999999987542 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCC----cceEEEeCHHHHHHHHhHHHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (726)
|+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.++|||++|+++|+|+++++..
T Consensus 273 ~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~ 352 (663)
T PTZ00400 273 YLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIE 352 (663)
T ss_pred HHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999998999999999999999999999999999888988876544 4789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecc
Q 004867 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (726)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (726)
+++++|+++++.+.+|+.|+||||+||+|+|+++|+++||.++...+||++|||+|||++|+++++. ++++.+.|++|
T Consensus 353 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~p 430 (663)
T PTZ00400 353 PCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVTP 430 (663)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999875 57899999999
Q ss_pred cceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeeccc----EEEEEEEeccccC-CCCcceeeEEECCCC
Q 004867 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (726)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~i~~~~i~~~~ 471 (726)
++||+++.++ .+.+|||+|+++|++++.+|.+..+ +.|.+ |+|+..+ .+|..||+|.|.+++
T Consensus 431 ~slgi~~~~g------------~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i-~ege~~~~~~n~~lg~~~i~~i~ 497 (663)
T PTZ00400 431 LSLGIETLGG------------VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKV-FQGEREMAADNKLLGQFDLVGIP 497 (663)
T ss_pred cceEEEecCC------------eeEEEEecCccCCccceeeeeeccCCCceEEEEE-EEecCccCCcCceeEEEEEcCCC
Confidence 9999998875 6889999999999999988877543 56666 5566666 888999999999999
Q ss_pred CCCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCC
Q 004867 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (726)
Q Consensus 472 ~~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (726)
+.+.|.+.|+|+|.+|.||+|+|++.+
T Consensus 498 ~~~~g~~~i~v~f~id~~Gil~v~a~~----------------------------------------------------- 524 (663)
T PTZ00400 498 PAPRGVPQIEVTFDVDANGIMNISAVD----------------------------------------------------- 524 (663)
T ss_pred CCCCCCceEEEEEEECCCCCEEEEEEe-----------------------------------------------------
Confidence 988888899999999999999998851
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHH
Q 004867 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (726)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (726)
+.++++..++|+.. .+||.++++++++++.+|..+|+.++++.++||+||
T Consensus 525 ----------------------------~~~~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lE 574 (663)
T PTZ00400 525 ----------------------------KSTGKKQEITIQSS--GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAE 574 (663)
T ss_pred ----------------------------ccCCcEEEEEeecc--ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 01112344555433 379999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004867 632 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (726)
Q Consensus 632 s~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 700 (726)
+|||.+|++|.+ +..++++++++++.+.++++++|||++ +.++|++++++|++++.++..+++.
T Consensus 575 s~iy~~r~~l~e-~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i~~k~~eL~~~l~~l~~k~y~ 638 (663)
T PTZ00400 575 TLIYSVEKQLSD-LKDKISDADKDELKQKITKLRSTLSSE----DVDSIKDKTKQLQEASWKISQQAYK 638 (663)
T ss_pred HHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999974 889999999999999999999999976 5789999999999999999986543
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.8e-99 Score=871.40 Aligned_cols=588 Identities=28% Similarity=0.489 Sum_probs=533.3
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcC-CceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
.+||||||||||+||++.+|.+.++.|..|+|.+||+|+|.+ ++++||..|+.+..++|.++++++|||||+.+.++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 389999999999999999999999999999999999999975 588999999999999999999999999999998864
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
...+++||.++...+|.+.+.+. + ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~i~--~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQIR--G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred -HHhhcCCceEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 45678999999888887776653 3 679999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
++|||++++|++||+|||++|++.+.. .+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~~----~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~ 232 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQD----QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVD 232 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhcccccC----CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHH
Confidence 999999999999999999999986532 3678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCC----cceEEEeCHHHHHHHHhHHHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (726)
|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++.+.|||++|+++|+|+++++..
T Consensus 233 ~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~ 312 (653)
T PRK13411 233 WLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIE 312 (653)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876543 5789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcC-CCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeec
Q 004867 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESF 395 (726)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg-~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~ 395 (726)
+|+++|+.+++.+.+|+.|+||||+||+|+|++.|+++|| ..+..++||++|||+|||++|+++++. ++++.+.|++
T Consensus 313 ~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~ 390 (653)
T PRK13411 313 PMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLLDVT 390 (653)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeeeecc
Confidence 9999999999999999999999999999999999999997 678889999999999999999999875 6789999999
Q ss_pred ccceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeeccc----EEEEEEEeccccC-CCCcceeeEEECCC
Q 004867 396 PFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPF 470 (726)
Q Consensus 396 ~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~i~~~~i~~~ 470 (726)
|++||+++.++ .+.+||+||++||++++.+|.+..+ +.|.+ |+|+... .+|..||.|.|.++
T Consensus 391 p~slgi~~~~~------------~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v-~~ge~~~~~~n~~lg~~~l~~i 457 (653)
T PRK13411 391 PLSLGIETLGE------------VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHV-LQGERAMAKDNKSLGKFLLTGI 457 (653)
T ss_pred cceeeEEecCC------------ceEEEEECCCcccceeeEEEEeccCCCeEEEEEE-EEecCcccccCceeeEEEEcCC
Confidence 99999998775 6889999999999999999886432 55555 5676666 88999999999999
Q ss_pred CCCCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCC
Q 004867 471 QSTKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADA 550 (726)
Q Consensus 471 ~~~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (726)
++.+.+.++|+|+|.+|.||+|+|++. +
T Consensus 458 ~~~~~g~~~i~v~f~id~~Gil~v~a~-------------------------d--------------------------- 485 (653)
T PRK13411 458 PPAPRGVPQIEVSFEIDVNGILKVSAQ-------------------------D--------------------------- 485 (653)
T ss_pred CCCCCCCccEEEEEEECCCCeEEEEEe-------------------------e---------------------------
Confidence 998888889999999999999999984 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhH
Q 004867 551 QGTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAV 630 (726)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~L 630 (726)
..+.++..+.+... .+||.++++++++++.+|..+|+.++++.++||+|
T Consensus 486 -----------------------------~~t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~l 534 (653)
T PRK13411 486 -----------------------------QGTGREQSIRITNT--GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQA 534 (653)
T ss_pred -----------------------------ccCCceEeeEEecc--ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 00011223444432 37999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004867 631 EAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (726)
Q Consensus 631 Es~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 700 (726)
|+|||.+|++|.+ +..++++++|+++.+.|+++++||+++ +++.++|++++++|++.+.|+..+++.
T Consensus 535 Es~iy~~r~~l~~-~~~~~~~~er~~i~~~l~~~~~wL~~~--~~~~~~~~~~~~el~~~~~~i~~~~y~ 601 (653)
T PRK13411 535 DSLLYSYESTLKE-NGELISEELKQRAEQKVEQLEAALTDP--NISLEELKQQLEEFQQALLAIGAEVYQ 601 (653)
T ss_pred HHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999974 789999999999999999999999983 578999999999999999999987764
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5.5e-98 Score=860.67 Aligned_cols=586 Identities=30% Similarity=0.514 Sum_probs=535.1
Q ss_pred Ce-EEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEc-CCceeecHhhHhhhhcCccchHHHHHHhhccCCCCH
Q 004867 1 MS-VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG-DKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDP 78 (726)
Q Consensus 1 m~-vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~ 78 (726)
|+ +||||||||||+||++++|.++++.|..|+|.+||+|+|. ++++++|..|..+..++|.++++++|||||+. ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 54 9999999999999999999999999999999999999997 67899999999999999999999999999998 56
Q ss_pred HHHHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHH
Q 004867 79 ELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (726)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~ 158 (726)
.++...+.+||+++..++|...+.+ .| +.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWVEI--DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 7888889999999998888776654 34 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHH
Q 004867 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (726)
Q Consensus 159 Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l 238 (726)
||++|||++++||+||+|||++|++.+. .+.++|||||||||||+|++++.++.++++++.|+.++||.+||.+|
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~~-----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l 229 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDKK-----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRI 229 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhccC-----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHH
Confidence 9999999999999999999999987652 36889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCC----cceEEEeCHHHHHHHHhHHHHHH
Q 004867 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERV 314 (726)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i 314 (726)
++|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.++.++.+ .++.+.|||++|+++|+|+++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~ 309 (627)
T PRK00290 230 IDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERT 309 (627)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877643 67899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeee
Q 004867 315 KRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNES 394 (726)
Q Consensus 315 ~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~ 394 (726)
..+|+++|+.++++..+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+.+++. ++++.+.|+
T Consensus 310 ~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~--~~~~~~~d~ 387 (627)
T PRK00290 310 IEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD--VKDVLLLDV 387 (627)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC--ccceeeeec
Confidence 999999999999999999999999999999999999999999889999999999999999999999874 678999999
Q ss_pred cccceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeeccc----EEEEEEEeccccC-CCCcceeeEEECC
Q 004867 395 FPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGP 469 (726)
Q Consensus 395 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~i~~~~i~~ 469 (726)
+|++||+++.++ .+.+|||+|+++|++++.+|.+..+ +.|.++ +++... .+|..||+|.|.+
T Consensus 388 ~~~slgi~~~~~------------~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~-~ge~~~~~~~~~lg~~~i~~ 454 (627)
T PRK00290 388 TPLSLGIETLGG------------VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVL-QGEREMAADNKSLGRFNLTG 454 (627)
T ss_pred cceEEEEEecCC------------eEEEEecCCCcCCccceEEEEecCCCcceEEEEEE-EecccccCcCceEEEEEECC
Confidence 999999998765 5789999999999999999887554 567774 555555 8889999999999
Q ss_pred CCCCCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccC
Q 004867 470 FQSTKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTAD 549 (726)
Q Consensus 470 ~~~~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (726)
+++.+.+.+.|+|+|++|.||+|+|++..
T Consensus 455 ~~~~~~g~~~i~v~f~~d~~gil~v~a~~--------------------------------------------------- 483 (627)
T PRK00290 455 IPPAPRGVPQIEVTFDIDANGIVHVSAKD--------------------------------------------------- 483 (627)
T ss_pred CCCCCCCCceEEEEEEECCCceEEEEEEE---------------------------------------------------
Confidence 99888887899999999999999998841
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhh
Q 004867 550 AQGTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNA 629 (726)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~ 629 (726)
+.+.+...+.+... .+|+.++++++++++.+|..+|+..+++.++||+
T Consensus 484 ------------------------------~~~~~~~~~~i~~~--~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~ 531 (627)
T PRK00290 484 ------------------------------KGTGKEQSITITAS--SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQ 531 (627)
T ss_pred ------------------------------ccCCceeEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 00011223444432 3799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004867 630 VEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (726)
Q Consensus 630 LEs~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 700 (726)
||+|+|.+|++|. ++..++++++|+++.+.|+++++||+++ +.++|++++++|+++++|+..|++.
T Consensus 532 le~~i~~~~~~l~-~~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 532 ADSLIYQTEKTLK-ELGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999997 5889999999999999999999999976 6789999999999999999998765
No 8
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=6.8e-98 Score=851.24 Aligned_cols=588 Identities=27% Similarity=0.456 Sum_probs=537.8
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~~ 81 (726)
.+||||||||||+||++.+++++++.|..|.|.+||+|+|.+++++||..|+.+...+|.++++++||+||+.+.++.++
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHH
Q 004867 82 RDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAAT 161 (726)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~ 161 (726)
...+.+||.++...+|.+.+.. +..+.++|+++.+++|++|+..|+.++|.++.++|||||+||++.||+++++||+
T Consensus 108 ~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 108 KDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 9999999999988888765542 2247899999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHH
Q 004867 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQH 241 (726)
Q Consensus 162 ~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 241 (726)
+|||++++||+||+|||++|++... .+.++||||+||||||+||+++.++.++|+++.|+.+|||++||..|++|
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~-----~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKT-----KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCC-----CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHH
Confidence 9999999999999999999997542 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCC----cceEEEeCHHHHHHHHhHHHHHHHHH
Q 004867 242 FAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKRP 317 (726)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~~ 317 (726)
+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+|+++++..+
T Consensus 260 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~ 339 (657)
T PTZ00186 260 ILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAP 339 (657)
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999988876532 45889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeeccc
Q 004867 318 LEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPF 397 (726)
Q Consensus 318 i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~ 397 (726)
++++|+++++++.+|+.|+||||+||||.|+++|+++||.++...+|||+|||+|||++|+++++. ++++.+.|++|+
T Consensus 340 v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p~ 417 (657)
T PTZ00186 340 CKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLDVTPL 417 (657)
T ss_pred HHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEeeccc
Confidence 999999999999999999999999999999999999999888899999999999999999999875 568999999999
Q ss_pred ceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecc----cEEEEEEEeccccC-CCCcceeeEEECCCCC
Q 004867 398 SISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPFQS 472 (726)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~i~~~~i~~~~~ 472 (726)
+||+++.++ .+.+|||||++||++++.+|.+.. .+.|.| |+|++.+ .+|..||+|.|.++|+
T Consensus 418 slgie~~~g------------~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i-~qGe~~~~~~n~~lg~~~l~~ip~ 484 (657)
T PTZ00186 418 SLGIETLGG------------VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKV-FQGEREMAADNQMMGQFDLVGIPP 484 (657)
T ss_pred cccceecCC------------EEEEEEeCCCEeeEEEeeccccccCCCceEEEEE-EEecccccccccccceEEEcCCCC
Confidence 999999876 688999999999999999888754 366777 5666666 8899999999999999
Q ss_pred CCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCC
Q 004867 473 TKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 552 (726)
Q Consensus 473 ~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (726)
.+.|.++|+|+|++|.||+|+|++.+
T Consensus 485 ~~~G~~~I~Vtf~iD~nGiL~V~a~d------------------------------------------------------ 510 (657)
T PTZ00186 485 APRGVPQIEVTFDIDANGICHVTAKD------------------------------------------------------ 510 (657)
T ss_pred CCCCCCcEEEEEEEcCCCEEEEEEEE------------------------------------------------------
Confidence 99898999999999999999999951
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHH
Q 004867 553 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 632 (726)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs 632 (726)
+.+++...+.|... .+|++++++++.+++.++..+|+.++++.+++|.+|+
T Consensus 511 ---------------------------~~tg~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 561 (657)
T PTZ00186 511 ---------------------------KATGKTQNITITAN--GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAET 561 (657)
T ss_pred ---------------------------ccCCcEEEEEeccC--ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 22233445666543 3799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHH
Q 004867 633 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 699 (726)
Q Consensus 633 ~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~ 699 (726)
++|.++..+.+. ..+++++++.+.+.+...++||.. .+.+.+.|++++++|++.+.++..+++
T Consensus 562 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~ 624 (657)
T PTZ00186 562 QLTTAERQLGEW--KYVSDAEKENVKTLVAELRKAMEN--PNVAKDDLAAATDKLQKAVMECGRTEY 624 (657)
T ss_pred HHHHHHHHhhhh--ccCCHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999642 468999999999999999999974 345678999999999999999998664
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=8.9e-98 Score=857.65 Aligned_cols=588 Identities=28% Similarity=0.470 Sum_probs=530.3
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcC-CceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
++||||||||||+||++.+|.+.++.|..|+|.+||+|+|.+ +++++|..|..+...+|.++++++|||||+.+.+ +
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 489999999999999999999999999999999999999975 5789999999999999999999999999999875 4
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
+...+.+||+++..++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 566778999999988898887766544 689999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
++|||++++||+||+|||++|++.+. .+.++|||||||||||+||+++.++.++|+++.|+.++||++||+.|++
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~~-----~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~ 270 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEKK-----SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 270 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhcccC-----CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHH
Confidence 99999999999999999999997643 3678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccC----CcceEEEeCHHHHHHHHhHHHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLME----EKDVRGFIKRDEFEQISAPILERVKR 316 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~efe~l~~~~~~~i~~ 316 (726)
|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.++++.. +.++.+.|||++|+++|+++++++..
T Consensus 271 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~ 350 (673)
T PLN03184 271 WLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKT 350 (673)
T ss_pred HHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999889899999999999999999999999999998886642 35789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecc
Q 004867 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (726)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (726)
+|+++|+.+++.+.+|+.|+||||+||||.|+++|+++||..+...+|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 351 ~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~p 428 (673)
T PLN03184 351 PVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVTP 428 (673)
T ss_pred HHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999974 56899999999
Q ss_pred cceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecc--cEEEEEE-EeccccC-CCCcceeeEEECCCCC
Q 004867 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG--TFTVDVQ-YADVSEL-RAPAKISTYTIGPFQS 472 (726)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~--~~~i~~~-y~~~~~~-~~~~~i~~~~i~~~~~ 472 (726)
++||+++.++ .+.+|||+|++||++++.+|.+.. ++.+.+. |+++..+ .+|..||+|.|.++++
T Consensus 429 ~slgi~~~~~------------~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~ 496 (673)
T PLN03184 429 LSLGLETLGG------------VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPP 496 (673)
T ss_pred ccceEEecCC------------eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCC
Confidence 9999999875 688999999999999999988753 3444443 6777666 8899999999999999
Q ss_pred CCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCC
Q 004867 473 TKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 552 (726)
Q Consensus 473 ~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (726)
.+.+.++|+|+|.+|.||+|+|++.+
T Consensus 497 ~~~g~~~i~v~f~id~~GiL~V~a~~------------------------------------------------------ 522 (673)
T PLN03184 497 APRGVPQIEVKFDIDANGILSVSATD------------------------------------------------------ 522 (673)
T ss_pred CCCCCceEEEEEEeCCCCeEEEEEEe------------------------------------------------------
Confidence 88888899999999999999999851
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHH
Q 004867 553 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 632 (726)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs 632 (726)
+.+.++..+.|... .+||.++++++++++.+|..+|+.++++.++||+||+
T Consensus 523 ---------------------------~~t~~~~~~~i~~~--~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~ 573 (673)
T PLN03184 523 ---------------------------KGTGKKQDITITGA--STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADS 573 (673)
T ss_pred ---------------------------cCCCeEEEEEeccc--ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH
Confidence 01112334455432 3799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004867 633 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (726)
Q Consensus 633 ~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 700 (726)
|||.+|++|. ++.+++++++|+++.+.|+++++|||.+ +.+.+++++++|.+..+++..+++.
T Consensus 574 ~iy~~r~~l~-e~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik~~~~~l~~~l~~l~~~~~~ 636 (673)
T PLN03184 574 VVYQTEKQLK-ELGDKVPADVKEKVEAKLKELKDAIASG----STQKMKDAMAALNQEVMQIGQSLYN 636 (673)
T ss_pred HHHHHHHHHH-HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999996 5889999999999999999999999986 4567777777777777777776543
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=9.1e-97 Score=847.67 Aligned_cols=587 Identities=28% Similarity=0.469 Sum_probs=532.3
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcC-CceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
.+||||||||||+||++.+|.+.++.|..|+|.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 599999999999999999999999999999999999999975 5799999999999999999999999999999865 4
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
....+.+||.+...++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 556678999999888888887765444 689999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
++|||++++||+||+|||++|++... .+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~-----~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 233 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKK-----NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVN 233 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccC-----CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHH
Confidence 99999999999999999999987542 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccC----CcceEEEeCHHHHHHHHhHHHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLME----EKDVRGFIKRDEFEQISAPILERVKR 316 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~efe~l~~~~~~~i~~ 316 (726)
|+.++|..++++++..+++++.+|+.+||++|+.||.+..+.+.++.+.. +.++...|+|++|+++|+++++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 313 (621)
T CHL00094 234 WLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRI 313 (621)
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888898887653 25788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecc
Q 004867 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (726)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (726)
+|+++|+.+++.+.+|+.|+||||+||+|.|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++|
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~--~~~~~~~d~~~ 391 (621)
T CHL00094 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVTP 391 (621)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCC--ccceeeeeeec
Confidence 9999999999999999999999999999999999999999888899999999999999999999874 57899999999
Q ss_pred cceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecc----cEEEEEEEeccccC-CCCcceeeEEECCCC
Q 004867 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (726)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~i~~~~i~~~~ 471 (726)
++||+++.++ .+.+|||+|+++|++++.+|.+.. .+.+.+ |+|+..+ .+|..||+|.|.+++
T Consensus 392 ~~lgi~~~~~------------~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i-~~ge~~~~~~n~~lg~~~i~~~~ 458 (621)
T CHL00094 392 LSLGVETLGG------------VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHV-LQGERELAKDNKSLGTFRLDGIP 458 (621)
T ss_pred eeeeeeccCC------------EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEE-EeeccccCCCCCEEEEEEEeCCC
Confidence 9999998765 688999999999999999988643 355565 5676666 889999999999999
Q ss_pred CCCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCC
Q 004867 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (726)
Q Consensus 472 ~~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (726)
+.+.+.+.|+|+|++|.||+|+|++.+
T Consensus 459 ~~~~g~~~i~v~f~id~~Gil~v~~~~----------------------------------------------------- 485 (621)
T CHL00094 459 PAPRGVPQIEVTFDIDANGILSVTAKD----------------------------------------------------- 485 (621)
T ss_pred CCCCCCCcEEEEEEECCCCeEEEEEee-----------------------------------------------------
Confidence 988888899999999999999999851
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHH
Q 004867 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (726)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (726)
+.+.+...++|... .+|+.++++++++++.+|..+|+.++++.++||.||
T Consensus 486 ----------------------------~~t~~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le 535 (621)
T CHL00094 486 ----------------------------KGTGKEQSITIQGA--STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAE 535 (621)
T ss_pred ----------------------------ccCCceeeeeeccc--hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhH
Confidence 00111223444422 379999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004867 632 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (726)
Q Consensus 632 s~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 700 (726)
+|||.+|++|+ ++..++++++|+++.+.|+++++|||++ ..+.|++++++|+.+++|+..+++.
T Consensus 536 ~~i~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 536 SLCYQAEKQLK-ELKDKISEEKKEKIENLIKKLRQALQND----NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999997 4889999999999999999999999986 4479999999999999999987655
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.4e-96 Score=846.63 Aligned_cols=583 Identities=29% Similarity=0.496 Sum_probs=528.3
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCC-ceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
.+||||||||||+||++.+|.+.++.|..|+|.+||+|+|.++ ++++|..|..+..++|.++++++|||||+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3799999999999999999999999999999999999999865 88999999999999999999999999999883 46
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
+...+.+||. +..++|.+.+.+. + +.++|+++++++|++|+..|+.+++.++.++|||||++|++.||+++++||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v~--~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKVD--G--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEEC--C--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 6777889999 5566787777653 3 689999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
++|||++++||+||+|||++|++.+.. .+.++|||||||||||+|++++.++.++|+++.|+.++||++||+.|++
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~----~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSK----KDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccC----CCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 999999999999999999999876532 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCC----cceEEEeCHHHHHHHHhHHHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (726)
|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+|+++++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~ 309 (595)
T TIGR02350 230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKE 309 (595)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876543 5788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecc
Q 004867 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (726)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (726)
+|+++|+.+++++.+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++|
T Consensus 310 ~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~~~ 387 (595)
T TIGR02350 310 PVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDVTP 387 (595)
T ss_pred HHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeeccc
Confidence 9999999999999999999999999999999999999999888999999999999999999999876 67899999999
Q ss_pred cceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeeccc----EEEEEEEeccccC-CCCcceeeEEECCCC
Q 004867 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (726)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~i~~~~i~~~~ 471 (726)
++||+++.++ .+.+||++|+++|++++.+|.+..+ +.+.+ |+++... .+|..||+|.|.+++
T Consensus 388 ~~igi~~~~~------------~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i-~~ge~~~~~~~~~lg~~~i~~~~ 454 (595)
T TIGR02350 388 LSLGIETLGG------------VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHV-LQGERPMAADNKSLGRFELTGIP 454 (595)
T ss_pred ceeEEEecCC------------ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEE-EeecccccccCcEeEEEEECCCC
Confidence 9999998765 5789999999999999999987654 35555 5666666 888999999999999
Q ss_pred CCCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCC
Q 004867 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (726)
Q Consensus 472 ~~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (726)
+.+.+.++|+|+|++|.||+|+|++...
T Consensus 455 ~~~~g~~~i~v~f~~d~~G~l~v~~~~~---------------------------------------------------- 482 (595)
T TIGR02350 455 PAPRGVPQIEVTFDIDANGILHVSAKDK---------------------------------------------------- 482 (595)
T ss_pred CCCCCCceEEEEEEEcCCCeEEEEEEEc----------------------------------------------------
Confidence 8887878999999999999999998510
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHH
Q 004867 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (726)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (726)
.+.+...+.++.. .+||.++++++++++.+|..+|+.++++.++||.||
T Consensus 483 -----------------------------~~~~~~~~~i~~~--~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lE 531 (595)
T TIGR02350 483 -----------------------------GTGKEQSITITAS--SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNAD 531 (595)
T ss_pred -----------------------------cCCceEEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 0012234445433 379999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHH
Q 004867 632 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERY 698 (726)
Q Consensus 632 s~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~ 698 (726)
+|||.+|++|+ ++..++++++++++.+.++++++|||++ +..+|++++++|+++++++..++
T Consensus 532 s~iy~~r~~l~-~~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 532 SLAYQAEKTLK-EAGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHH-HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 4688999999999999999999999976 66799999999999999998754
No 12
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-97 Score=804.50 Aligned_cols=601 Identities=32% Similarity=0.548 Sum_probs=561.0
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
|.+||||||||++||+++.++.++++.|+.|+|.+||+|+|.++++++|..|..+...||.|+++++||++|+.++++.+
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v 86 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEV 86 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
+..+++|||.+....++.+.+.+.+.++.+.++|+++.+++|.+++..|+.++|..+.++|+|||+||++.||+++.+|+
T Consensus 87 ~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~ 166 (620)
T KOG0101|consen 87 QSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAA 166 (620)
T ss_pred HhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHH
Confidence 99999999999977777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
.+|||+++++|+||+|||++|++.+. . ....+|||+|+||||||+|++.+.+|.+.++++.++.++||.+||+.|.+
T Consensus 167 ~iaGl~vlrii~EPtAaalAygl~k~-~--~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 167 LIAGLNVLRIINEPTAAALAYGLDKK-V--LGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HhcCCceeeeecchHHHHHHhhcccc-c--cceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 99999999999999999999998765 2 24788999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEK 320 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~ 320 (726)
|+..+|+.+++.++..|+++++||+.+||++|+.||....+++.+++|+++.|+...|+|.+|+.++.+++.++..++..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~ 323 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEK 323 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcC-CCCCCCCCchhhhhcchHHHHHHhCCC--CcccceEEeeeccc
Q 004867 321 ALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPT--FKVREFQVNESFPF 397 (726)
Q Consensus 321 ~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg-~~v~~~~n~~eaVa~GAa~~aa~ls~~--~~~~~~~~~d~~~~ 397 (726)
+|+++.+++.+|+.|+||||++|+|.+|..++++|+ +.+..++||||+||+|||++||.+++. ..+.++.+.|+.|.
T Consensus 324 ~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl 403 (620)
T KOG0101|consen 324 ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPL 403 (620)
T ss_pred HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccc
Confidence 999999999999999999999999999999999994 788999999999999999999999874 23478999999999
Q ss_pred ceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeeccc----EEEEEEEeccccC-CCCcceeeEEECCCCC
Q 004867 398 SISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQS 472 (726)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~i~~~~i~~~~~ 472 (726)
++||+..++ .+.++|++||.+|++++.+|.+..+ +.|.+ |++++.+ .+|..+|.|.+.|+||
T Consensus 404 ~~gve~a~~------------~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~V-yEger~~~kdn~~lg~feL~gipp 470 (620)
T KOG0101|consen 404 SLGVETAGG------------VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQV-YEGERAMTKDNNLLGKFELTGIPP 470 (620)
T ss_pred cccccccCC------------cceeeeecccccceeeeeeeeeecCCCCceeEEE-EeccccccccccccceeeecCCCc
Confidence 999998876 7999999999999999988877553 55666 7788777 9999999999999999
Q ss_pred CCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCC
Q 004867 473 TKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 552 (726)
Q Consensus 473 ~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (726)
++.+.+.|+++|.+|.+|+|.|++. |
T Consensus 471 aprgvp~IevtfdiD~ngiL~Vta~-------------------------d----------------------------- 496 (620)
T KOG0101|consen 471 APRGVPQIEVTFDIDANGILNVTAV-------------------------D----------------------------- 496 (620)
T ss_pred cccCCcceeEEEecCCCcEEEEeec-------------------------c-----------------------------
Confidence 9999999999999999999999995 2
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHH
Q 004867 553 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 632 (726)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs 632 (726)
+.++|...+.|.+.. +.||.++|++|...++.+..+|...+.+..++|.||+
T Consensus 497 ---------------------------~stgK~~~i~i~n~~-grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~ 548 (620)
T KOG0101|consen 497 ---------------------------KSTGKENKITITNDK-GRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLES 548 (620)
T ss_pred ---------------------------ccCCccceEEEeccc-ceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHH
Confidence 223334455566554 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004867 633 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEF 701 (726)
Q Consensus 633 ~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 701 (726)
|+|.++..+++.- +.++++.+.++.++++++.+||+.+ ..+.+++|+.|.++|+..++||..+++..
T Consensus 549 ~~f~~~~~~~~~~-~~i~~~~~~~~~~~~~~~i~wl~~~-~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 549 YAFNMKATVEDEK-GKINEEDKQKILDKCNEVINWLDKN-QLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHhhhhhhhhhc-cccChhhhhhHHHHHHHHHHHhhhc-ccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 9999999997543 8999999999999999999999987 56669999999999999999999987654
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.3e-94 Score=822.40 Aligned_cols=578 Identities=26% Similarity=0.444 Sum_probs=521.0
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCC-ceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHHH
Q 004867 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~~ 81 (726)
+||||||||||+||++.+|+++++.|..|++.+||+|+|.++ +++||..|+.+..++|.++++++|||||+.+.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999865 78999999999999999999999999999987653
Q ss_pred HhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHH
Q 004867 82 RDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAAT 161 (726)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~ 161 (726)
. .+.+||.+...++|.+.+.+.. ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 5678999998888888877642 3789999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHH
Q 004867 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQH 241 (726)
Q Consensus 162 ~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 241 (726)
+|||++++|++||+|||++|++.+. .+.++|||||||||||+|++++.++.++|+++.|+.++||++||+.|++|
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA-----SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC-----CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999987653 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHH
Q 004867 242 FAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKA 321 (726)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~ 321 (726)
+.++ +++++..+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++|+|+++++..+++++
T Consensus 229 l~~~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~ 302 (599)
T TIGR01991 229 ILKQ----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRA 302 (599)
T ss_pred HHHh----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9866 45666678999999999999999999999888888864 78899999999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecccceEE
Q 004867 322 LAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISL 401 (726)
Q Consensus 322 l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i 401 (726)
|+.+++.+.+|+.|+||||+||+|+|+++|+++||..+..++||++|||+|||++|+++++.++.+++.+.|++|++||+
T Consensus 303 L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 303 LRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred HHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEE
Confidence 99999999999999999999999999999999999888889999999999999999999998888899999999999999
Q ss_pred EecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecc--c--EEEEEEEeccccC-CCCcceeeEEECCCCCCCcc
Q 004867 402 SWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG--T--FTVDVQYADVSEL-RAPAKISTYTIGPFQSTKSE 476 (726)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~--~--~~i~~~y~~~~~~-~~~~~i~~~~i~~~~~~~~~ 476 (726)
++.++ .+.+|||||+++|++++..|++.. . +.+.+ |+|++.+ .+|.+||+|.|.++|+.+.+
T Consensus 383 ~~~~g------------~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i-~qGe~~~~~~n~~lg~~~l~~i~~~~~g 449 (599)
T TIGR01991 383 ETMGG------------LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHV-VQGERELVEDCRSLARFELRGIPPMVAG 449 (599)
T ss_pred EecCC------------EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEE-EeecccccccCceEEEEEEcCCCCCCCC
Confidence 99875 688999999999999988776533 3 44555 6777766 88999999999999998888
Q ss_pred cceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCCCCCC
Q 004867 477 RAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTDA 556 (726)
Q Consensus 477 ~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (726)
.++|+|+|++|.||+|+|++.+
T Consensus 450 ~~~i~v~f~id~~gil~V~a~~---------------------------------------------------------- 471 (599)
T TIGR01991 450 AARIRVTFQVDADGLLTVSAQE---------------------------------------------------------- 471 (599)
T ss_pred CCcEEEEEEECCCCeEEEEEEE----------------------------------------------------------
Confidence 8999999999999999999951
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHHHH
Q 004867 557 PGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYD 636 (726)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~ 636 (726)
+.+.++..+.|... .+|+.++++++.+++.++..+|+.++++.+++|.+|+|+|.
T Consensus 472 -----------------------~~t~~~~~~~i~~~--~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 526 (599)
T TIGR01991 472 -----------------------QSTGVEQSIQVKPS--YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEA 526 (599)
T ss_pred -----------------------CCCCcEEEEecccc--cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 01112223444433 36999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHH
Q 004867 637 MRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 699 (726)
Q Consensus 637 ~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~ 699 (726)
+++.+. ++..++++++|+++.+.++++++||+++ +.+.++++.++|++..+++..+.+
T Consensus 527 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~ 584 (599)
T TIGR01991 527 LQAALA-ADGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALEEATDNFAARRM 584 (599)
T ss_pred HHHHHH-HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999995 3667899999999999999999999975 567899999999999999886443
No 14
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-94 Score=769.77 Aligned_cols=696 Identities=29% Similarity=0.475 Sum_probs=575.7
Q ss_pred CeEEEEEcCccceEEEEEECC-ceEEEeCCCCCcccceEEEEcCCceeecHhhHhhhhcCccchHHHHHHhhccCCCCHH
Q 004867 1 MSVVGFDLGNESCIVAVARQR-GIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~-~~~ii~n~~g~~~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~ 79 (726)
.+|++||+||.+++||++++| +++|++|..++|++|++|+|.+++|+||.+|..+..++|++++.+++.|+|+...++.
T Consensus 22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~ 101 (902)
T KOG0104|consen 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPT 101 (902)
T ss_pred hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcH
Confidence 378999999999999999988 7899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhccCC-ceEEeCC-CCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHH
Q 004867 80 LQRDLKSLP-FAVTEGP-DGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVI 157 (726)
Q Consensus 80 ~~~~~~~~~-~~~~~~~-~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~ 157 (726)
+..+.+.+| +.++.++ .+.+.|.+. + ...|++|++++|+|.+.++.|+.+...++.++|||||.||++.||+++.
T Consensus 102 v~ly~~~~p~~e~v~d~~rstV~F~i~--d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 102 VDLYQKRFPFFELVEDPQRSTVVFKIS--D-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred HHHHHhcCCceeecccCccceEEEEeC--C-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 888887655 5566664 666776653 3 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEee----------CCeEEEEEEecCC
Q 004867 158 DAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFK----------KGQLKILGHSFDR 227 (726)
Q Consensus 158 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~----------~~~~~vl~~~~~~ 227 (726)
+||++||++++.|||+.+|||+.||+.+...+...+++++|||||+|+|.++++.+. ...+++++.++|.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 999999999999999999999999999765454568999999999999999999986 1479999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhhhcc--CccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHH
Q 004867 228 SVGGRDFDEVLFQHFAAKFKEEYKI--DVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQ 305 (726)
Q Consensus 228 ~lGG~~iD~~l~~~l~~~~~~~~~~--~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~ 305 (726)
.|||..|+.+|.+||.+.|.++++. +++.+||+|+||.++|+++|..||+|..+.+.|++|++|+||+.+|||++||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEe 338 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEE 338 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHH
Confidence 9999999999999999999998864 68899999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcC-CCCCCCCCchhhhhcchHHHHHHhCCCC
Q 004867 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPTF 384 (726)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg-~~v~~~~n~~eaVa~GAa~~aa~ls~~~ 384 (726)
+|.++..++..+|+++|..++++.++|+.|+|.||+||+|.||+.|.++.| .++...+|+|||+++||+++||.||..|
T Consensus 339 lc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksF 418 (902)
T KOG0104|consen 339 LCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSF 418 (902)
T ss_pred HHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999998 6799999999999999999999999999
Q ss_pred cccceEEeeecccceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEee-cccEEEEEEEeccccCCCCccee
Q 004867 385 KVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYR-SGTFTVDVQYADVSELRAPAKIS 463 (726)
Q Consensus 385 ~~~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~-~~~~~i~~~y~~~~~~~~~~~i~ 463 (726)
+++++.+.|.++|++.+++.+. +.+ .........+|++|.+||.++.++|+. +.+|.+.+.|+.- + ..+.
T Consensus 419 KvKpf~V~D~~~yp~~v~f~~~-~~i---~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~---~--~nl~ 489 (902)
T KOG0104|consen 419 KVKPFNVVDASVYPYLVEFETE-PGI---HALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDL---G--QNLT 489 (902)
T ss_pred cccceeeeecccccEEEEeccC-Ccc---cccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhh---c--cCcc
Confidence 9999999999999999998764 111 012224567999999999999888865 4578777766432 1 2455
Q ss_pred eEEECCCCCC-------CcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccC-------CCchhhh-ccccCCCCCCC
Q 004867 464 TYTIGPFQST-------KSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVT-------KEPEKEA-AKMETDEVPSD 528 (726)
Q Consensus 464 ~~~i~~~~~~-------~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~ 528 (726)
++.|+|+... ......|+++|.+|.+|++.|+.+.++++...++... +.+..++ ++..+|..++
T Consensus 490 ~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~- 568 (902)
T KOG0104|consen 490 TVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQE- 568 (902)
T ss_pred EEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccch-
Confidence 8999988854 1235689999999999999999999887643221110 1100000 0000000000
Q ss_pred CCCCCCCccccccccccCccCC---CCCCCCCCCCCCCCCCCCCCC--CccccCCCccc--ceeEeeeEEecc--CCCCC
Q 004867 529 AAPPSSSETDVNMQDAKGTADA---QGTTDAPGAENGVPESGDKPT--QMETDKTPKKK--VKKTNIPVSELV--YGGML 599 (726)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~k~~--~k~~~l~v~~~~--~~~ls 599 (726)
++ .+.++.... +..++.....+. .+..++.+ ..+|.. ++.+ -..+.++|+..+ ++.|+
T Consensus 569 -------e~----ae~k~~ep~e~se~~ee~~~d~s~-e~k~e~~t~e~~~~~~-~~~~~~p~~~~~~i~~~~~~~~~l~ 635 (902)
T KOG0104|consen 569 -------ED----AEEKGLEPSERSELEEEAEEDASQ-EDKTEKETSEAQKPTE-KKETPAPMVVRLQIQETYPDLPVLN 635 (902)
T ss_pred -------hh----hhhhccCccccccccccccccccc-cccccccchhccCcch-hhcccCcceeEeeeeeecccccCCc
Confidence 00 000000000 000000000000 00000000 001111 1111 123445555443 34699
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHHHHHHHHhh-hhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchH
Q 004867 600 PVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLC-DKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKG 678 (726)
Q Consensus 600 ~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~-~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~ 678 (726)
...+...+.++..+...|+.+.++++|.|.||+|+|++.++|+ ++|.++.+++|+..|.+.+..+.+||++++.+.+++
T Consensus 636 ~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~ 715 (902)
T KOG0104|consen 636 ENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTE 715 (902)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchh
Confidence 9999999999999999999999999999999999999999997 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Q 004867 679 VYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAA 722 (726)
Q Consensus 679 ~~~~kl~~L~~~~~~i~~R~~e~~~rp~~~~~~~~~~~~~~~~~ 722 (726)
+|.+++.+|++++..+.+|..+...+|..++.|.+.++.+.+++
T Consensus 716 ~~~ek~a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l 759 (902)
T KOG0104|consen 716 MLTEKLAELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFL 759 (902)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998775
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=8.6e-93 Score=810.92 Aligned_cols=576 Identities=25% Similarity=0.427 Sum_probs=516.2
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~~ 81 (726)
.+||||||||||+||++.+|.++++.|..|++.+||+|+|.+++++||..|+.+...+|.++++++|||||+.+.+. +
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~--~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI--Q 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh--h
Confidence 47999999999999999999999999999999999999999888999999999999999999999999999998763 4
Q ss_pred HhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHH
Q 004867 82 RDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAAT 161 (726)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~ 161 (726)
.....+||.+...++|.+.+.+. + ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 45567899998887888877753 2 3789999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHH
Q 004867 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQH 241 (726)
Q Consensus 162 ~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 241 (726)
+|||++++||+||+|||++|++.+. .+.++||||+||||||+||+++.++.++|+++.|+.++||++||..|++|
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDSG-----QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhcccC-----CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 9999999999999999999987542 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHH
Q 004867 242 FAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKA 321 (726)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~ 321 (726)
+.++| +.+...+++++.+|+.+||++|+.||.+..+.+.+..+ ...|||++|+++|+|+++++..+++++
T Consensus 249 ~~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~ 318 (616)
T PRK05183 249 ILEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRA 318 (616)
T ss_pred HHHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 98875 44455789999999999999999999998888887532 234999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecccceEE
Q 004867 322 LAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISL 401 (726)
Q Consensus 322 l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i 401 (726)
|+++++.+.+|+.|+||||+||+|+|++.|+++||..+..++|||+|||+|||++|+++++.+..+++.+.|++|++||+
T Consensus 319 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi 398 (616)
T PRK05183 319 LRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGL 398 (616)
T ss_pred HHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccc
Confidence 99999999999999999999999999999999999888889999999999999999999988777899999999999999
Q ss_pred EecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecc--c--EEEEEEEeccccC-CCCcceeeEEECCCCCCCcc
Q 004867 402 SWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG--T--FTVDVQYADVSEL-RAPAKISTYTIGPFQSTKSE 476 (726)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~--~--~~i~~~y~~~~~~-~~~~~i~~~~i~~~~~~~~~ 476 (726)
++.++ .+.+|||||+++|++++.+|++.. . +.+.+ |+|++.+ .+|..||+|.|.++|+.+.+
T Consensus 399 ~~~~g------------~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v-~qGe~~~~~~n~~lg~~~i~~i~~~~~g 465 (616)
T PRK05183 399 ETMGG------------LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHV-VQGERELVADCRSLARFELRGIPPMAAG 465 (616)
T ss_pred eecCC------------eEEEEEeCCCcccccccEEEEeccCCCeEEEEEE-ecccccccccccEEEEEEeCCCCCCCCC
Confidence 98765 688999999999999988877643 2 44555 6777776 88999999999999998888
Q ss_pred cceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCCCCCC
Q 004867 477 RAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTDA 556 (726)
Q Consensus 477 ~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (726)
.++|+|+|++|.||+|+|++.+
T Consensus 466 ~~~i~v~f~~d~~Gil~V~a~~---------------------------------------------------------- 487 (616)
T PRK05183 466 AARIRVTFQVDADGLLSVTAME---------------------------------------------------------- 487 (616)
T ss_pred CccEEEEEEECCCCeEEEEEEE----------------------------------------------------------
Confidence 8899999999999999999851
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHHHH
Q 004867 557 PGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYD 636 (726)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~ 636 (726)
+.+++...+.|.... +|++++++++++++.++..+|+..+++.+++|++|+|+|.
T Consensus 488 -----------------------~~~~~~~~~~i~~~~--~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~ 542 (616)
T PRK05183 488 -----------------------KSTGVEASIQVKPSY--GLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEA 542 (616)
T ss_pred -----------------------cCCCcEEEecccccc--cCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 111123344554332 6999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHH
Q 004867 637 MRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 699 (726)
Q Consensus 637 ~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~ 699 (726)
+++.|.+ ....+++++|+++.+.++++++||..+ +.+.|++++++|++.++++..+.+
T Consensus 543 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l~~~~~~~~~~~~ 600 (616)
T PRK05183 543 LQAALAA-DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKALDKATQEFAARRM 600 (616)
T ss_pred HHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999963 457899999999999999999999754 778999999999999999997544
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.4e-93 Score=828.08 Aligned_cols=595 Identities=40% Similarity=0.677 Sum_probs=534.1
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHHHH
Q 004867 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQR 82 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~~~ 82 (726)
||||||||+||+||++.+++++++.|..|+|.+||+|+|.+++++||..|...+.++|.++++++|||||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHHH
Q 004867 83 DLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATI 162 (726)
Q Consensus 83 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~ 162 (726)
..+.+||.+...++|.+.+.+.+.|+.+.++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999989999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHH
Q 004867 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHF 242 (726)
Q Consensus 163 AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l 242 (726)
|||++++||+||+|||++|++.+.. .+.++|||||||||+|+|++++.++.++++++.++..+||++||.+|++|+
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~ 236 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYL 236 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS----SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc----cccceeccccccceEeeeehhcccccccccccccccccccceecceeeccc
Confidence 9999999999999999999887643 478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCC--CCcccEEeccccC-CcceEEEeCHHHHHHHHhHHHHHHHHHHH
Q 004867 243 AAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSA--NPEAPLNIECLME-EKDVRGFIKRDEFEQISAPILERVKRPLE 319 (726)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~--~~~~~i~i~~l~~-~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (726)
.++|+.+++.++..+++.+.+|+.+|+++|+.||. +....+.++++.+ |.++.+.|+|++|+++++|+++++..+|+
T Consensus 237 ~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 237 LEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccc
Confidence 99999999999999999999999999999999999 5666778888877 88999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecccce
Q 004867 320 KALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSI 399 (726)
Q Consensus 320 ~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 399 (726)
++|+.++++..+|+.|+|+||+||+|+|++.|++.||..+..++||++|||+|||++|+.+++.++.+++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999998888999999999999999999999989999999999999999
Q ss_pred EEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecc----cEEEEEEEeccccCCCCcceeeEEECCCCCCCc
Q 004867 400 SLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSELRAPAKISTYTIGPFQSTKS 475 (726)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~~~~~~i~~~~i~~~~~~~~ 475 (726)
||.+.++ .+.+++++|+++|..++..+.+.. .|.+.++|++.....+|..||+|.|.++++.+.
T Consensus 397 ~i~~~~~------------~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~ 464 (602)
T PF00012_consen 397 GIEVSNG------------KFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPK 464 (602)
T ss_dssp EEEETTT------------EEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSST
T ss_pred ccccccc------------ccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccc
Confidence 9999876 688999999999999886665432 588888654443347889999999999998888
Q ss_pred ccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCCCCC
Q 004867 476 ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTD 555 (726)
Q Consensus 476 ~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (726)
+.++|+|+|++|.+|+|+|.++.+..
T Consensus 465 g~~~i~v~f~ld~~Gil~V~~~~~~~------------------------------------------------------ 490 (602)
T PF00012_consen 465 GKPKIKVTFELDENGILSVEAAEVET------------------------------------------------------ 490 (602)
T ss_dssp TSSEEEEEEEEETTSEEEEEEEETTT------------------------------------------------------
T ss_pred cccceeeEEeeeeeeehhhhhccccc------------------------------------------------------
Confidence 88899999999999999999973210
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHHH
Q 004867 556 APGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVY 635 (726)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy 635 (726)
.+...+.+.... .+++++++++.++++++...|+.++++.+++|.||+++|
T Consensus 491 ---------------------------~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~ 541 (602)
T PF00012_consen 491 ---------------------------GKEEEVTVKKKE--TLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIY 541 (602)
T ss_dssp ---------------------------TEEEEEEEESSS--SSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cccccccccccc--ccccccccccccccchhhhhhhhhhhccccHHHHHHHHH
Confidence 011223443333 489999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004867 636 DMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (726)
Q Consensus 636 ~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 700 (726)
.+|+.|++. .++++++++ .++++++.+||+++.++++.++|++|+++|+++.+||..|+++
T Consensus 542 ~~r~~l~~~-~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 542 ELRDKLEED-KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHTCC-GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhh-hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999755 678887777 8999999999999988999999999999999999999999863
No 17
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-90 Score=717.53 Aligned_cols=591 Identities=28% Similarity=0.489 Sum_probs=544.2
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEc-CCceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG-DKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
+|+|||+||||||++++.++.+.++.|..|.|.+||+|+|. +.++++|..|+.+...||.|+++.-||+||+++.++.+
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 48999999999999999999999999999999999999995 45899999999999999999999999999999999999
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
+.+++..||+++...+|...++. . ...++|.++.+++|.+++++|+++++.++...|+|||+||++.||+++++|.
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~--~--G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEA--R--GKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEe--C--CeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999999877765 3 4899999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
++||+++++++|||+|||++|++.+.. ...++|||+||||||++|+.+.+|.|+|.++.||.++||.+||..+.+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~-----~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~ 258 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKE-----DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVR 258 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccC-----CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHH
Confidence 999999999999999999999997652 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCC----cceEEEeCHHHHHHHHhHHHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (726)
|+..+|+...++++..+.+++.||+.++|++|+.||...+..+.++.+..+ ..+++++||.+|++++.++++|.+.
T Consensus 259 ~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~ 338 (640)
T KOG0102|consen 259 FIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIE 338 (640)
T ss_pred HHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999987766 5789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecc
Q 004867 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (726)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (726)
++.++|++|++..+||+.|+|+||.+|+|.+++.+++.||..+....||||+||.|||+++..++.. ++++.+.|++|
T Consensus 339 p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlLLdVtp 416 (640)
T KOG0102|consen 339 PCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLLLDVTP 416 (640)
T ss_pred HHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceeeeecch
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 78999999999
Q ss_pred cceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeeccc----EEEEEEEeccccC-CCCcceeeEEECCCC
Q 004867 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (726)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~i~~~~i~~~~ 471 (726)
+++||+..++ .+..|++|||.||++++-.|.+..+ ..|.+ +++++.+ .+|..+|.|.+.|+|
T Consensus 417 LsLgietlgg------------vft~Li~rnttIptkksqvfstaadgqt~V~ikv-~qgere~~~dnk~lG~f~l~gip 483 (640)
T KOG0102|consen 417 LSLGIETLGG------------VFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKV-FQGEREMVNDNKLLGSFILQGIP 483 (640)
T ss_pred HHHHHHhhhh------------hheecccCCcccCchhhhheeecccCCceEEEEe-eechhhhhccCcccceeeecccC
Confidence 9999999887 6889999999999999988887542 55666 5778887 999999999999999
Q ss_pred CCCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCC
Q 004867 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (726)
Q Consensus 472 ~~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (726)
|.+.+.++|.|+|.+|.|||++|++. |
T Consensus 484 p~pRgvpqieVtfDIdanGI~~vsA~-------------------------d---------------------------- 510 (640)
T KOG0102|consen 484 PAPRGVPQIEVTFDIDANGIGTVSAK-------------------------D---------------------------- 510 (640)
T ss_pred CCCCCCCceeEEEeecCCceeeeehh-------------------------h----------------------------
Confidence 99999999999999999999999995 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHH
Q 004867 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (726)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (726)
|.+.|..++.+.... +||+.+++.|+++++.+...|+.++++.+.+|..+
T Consensus 511 ----------------------------k~t~K~qsi~i~~sg--gLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~ 560 (640)
T KOG0102|consen 511 ----------------------------KGTGKSQSITIASSG--GLSKDEIELMVGEAERLASTDKEKREAIETKNKAD 560 (640)
T ss_pred ----------------------------cccCCccceEEeecC--CCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchh
Confidence 112233456665544 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004867 632 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEF 701 (726)
Q Consensus 632 s~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 701 (726)
+++|.....+. .|.+.++-++..+|...+....+.+-.- ...+-+++..+...|++...|+..-++..
T Consensus 561 s~~~~te~~~~-~~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~~k~~~~~l~q~~lkl~es~~k~ 628 (640)
T KOG0102|consen 561 SIIYDTEKSLK-EFEEKIPAEECEKLEEKISDLRELVANK-DSGDMEEIKKAMSALQQASLKLFESAYKN 628 (640)
T ss_pred heecCchhhhh-hhhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhhHHHHHHHHHHhhhHHHHHHHhh
Confidence 99999999996 5788889899999999999999988632 22233888999999999999998765543
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.3e-87 Score=759.06 Aligned_cols=544 Identities=21% Similarity=0.331 Sum_probs=466.4
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCceeecHhhHhhhhcCccchHHHHHHhhccCCCCH---
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDP--- 78 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~--- 78 (726)
.+||||||||||+||++.+++++++.|..|++.+||+|+|.++++++|..| +++++||++|+.+++.
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 489999999999999999999999999999999999999998889999987 7999999999998752
Q ss_pred -HHHHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHH
Q 004867 79 -ELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVI 157 (726)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~ 157 (726)
.+....+. .....++.. .+.+.+ +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 90 ~~~~~~~k~----~~~~~~~~~--~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 90 PALFSLVKD----YLDVNSSEL--KLNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred hhhHhhhhh----eeecCCCee--EEEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 22111111 111222222 233333 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHH
Q 004867 158 DAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEV 237 (726)
Q Consensus 158 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~ 237 (726)
+||++||++++++++||+|||++|++.+. ...++||||+||||||+|++++.++.++|+++.|+.++||++||.+
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~ 236 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKN-----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVV 236 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccC-----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHH
Confidence 99999999999999999999999997642 3568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHH
Q 004867 238 LFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRP 317 (726)
Q Consensus 238 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~ 317 (726)
|++|+..+|. ...+.+ .++.||++|+.||.+..... ..++|||++|+++|+|+++++..+
T Consensus 237 l~~~~~~~~~------~~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 237 ITQYLCNKFD------LPNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHHHHHhcC------CCCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999998763 222222 23469999999998764321 167899999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeeccc
Q 004867 318 LEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPF 397 (726)
Q Consensus 318 i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~ 397 (726)
++++|+.++ ..+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+.++..+ +++.+.|++|+
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~l~Dv~p~ 372 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH--TNSLLIDVVPL 372 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc--cceEEEEeccc
Confidence 999999998 56899999999999999999999999998888899999999999999999998753 47899999999
Q ss_pred ceEEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeecc----cEEEEEEEeccccC-CCCcceeeEEECCCCC
Q 004867 398 SISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPFQS 472 (726)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~i~~~~i~~~~~ 472 (726)
+||+++.++ .+.+||+||+++|++++..|++.. .+.|.+ |+|+..+ .+|..||+|.|.++|+
T Consensus 373 slgi~~~~g------------~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v-~qGe~~~~~~n~~lg~~~l~~i~~ 439 (595)
T PRK01433 373 SLGMELYGG------------IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHI-LQGEREMAADCRSLARFELKGLPP 439 (595)
T ss_pred ceEEEecCC------------EEEEEEECCCcccceeeEEeEeecCCCeEEEEEE-EeccccccCCCcEEEEEEEcCCCC
Confidence 999999876 688999999999999887776543 355665 6777776 8999999999999999
Q ss_pred CCcccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCC
Q 004867 473 TKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 552 (726)
Q Consensus 473 ~~~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (726)
.+.|.++|+|+|++|.||+|+|++.+
T Consensus 440 ~~~g~~~i~vtf~id~~Gil~V~a~~------------------------------------------------------ 465 (595)
T PRK01433 440 MKAGSIRAEVTFAIDADGILSVSAYE------------------------------------------------------ 465 (595)
T ss_pred CCCCCccEEEEEEECCCCcEEEEEEE------------------------------------------------------
Confidence 88888899999999999999999951
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHH
Q 004867 553 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 632 (726)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs 632 (726)
+.++++..+.|... .+||+++++++++++.++..+|...+++.+++|.+|+
T Consensus 466 ---------------------------~~t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 516 (595)
T PRK01433 466 ---------------------------KISNTSHAIEVKPN--HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEA 516 (595)
T ss_pred ---------------------------cCCCcEEEEEecCC--CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 11223345555433 3699999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhH
Q 004867 633 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDP 693 (726)
Q Consensus 633 ~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~ 693 (726)
++|.+++.+++ +...+++++|+.+.+.+++.++||..+ +...+++++++|+....+
T Consensus 517 ~~~~~~~~~~~-~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 517 LIFNIERAIAE-LTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSIKEFKSKIKK 572 (595)
T ss_pred HHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Confidence 99999999963 667789999999999999999999754 555666777777766666
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-86 Score=743.01 Aligned_cols=566 Identities=31% Similarity=0.501 Sum_probs=518.3
Q ss_pred eEEEEEcCccceEEEEEECC-ceEEEeCCCCCcccceEEEEcCCc-eeecHhhHhhhhcCccchHHHHHHhhccCCCCHH
Q 004867 2 SVVGFDLGNESCIVAVARQR-GIDVVLNDESKRETPSIVCFGDKQ-RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~-~~~ii~n~~g~~~~PS~V~~~~~~-~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~ 79 (726)
.+||||||||||+||++.++ .+.++.|..|.|.+||+|+|..++ +++|..|+.++..+|.+++..+||++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 48999999999999999988 799999999999999999999765 9999999999999999999999999998611
Q ss_pred HHHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHH
Q 004867 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA 159 (726)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A 159 (726)
+. .+.+...| +.++|+++++++|.++++.|+.+++..+..+|||||+||++.||+++++|
T Consensus 83 -----------------~~-~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -----------------GL-KISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -----------------CC-cceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 00 11122233 68999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHH
Q 004867 160 ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLF 239 (726)
Q Consensus 160 a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 239 (726)
+++|||+++++++||+|||++|++.+. .+.+|||||+||||||+|++++..+.++|+++.|+.++||++||.+|.
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~-----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~ 217 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG-----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALI 217 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC-----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHH
Confidence 999999999999999999999998765 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHH
Q 004867 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLE 319 (726)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (726)
+|+..+|..++++++..+++++.||+.+|+++|+.||.+.++.+.++++..+.++..+|+|++||+++.+++.++..++.
T Consensus 218 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~ 297 (579)
T COG0443 218 DYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVE 297 (579)
T ss_pred HHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887778899999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCCCcccceEEeeecccce
Q 004867 320 KALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSI 399 (726)
Q Consensus 320 ~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 399 (726)
++|..++++..+|+.|+||||++|||.|++.++++||.++...+|||++||.|||++|+.+++... ++.+.|++|+++
T Consensus 298 ~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~plsl 375 (579)
T COG0443 298 QALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVIPLSL 375 (579)
T ss_pred HHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred EEEecCCCCcccccCCCCCceEEEEeCCCCCCceeEEEEeeccc----EEEEEEEeccccC-CCCcceeeEEECCCCCCC
Q 004867 400 SLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQSTK 474 (726)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~i~~~~i~~~~~~~ 474 (726)
|+++.++ .+..++++|+.+|.++.-.|.+..| ..+.+ ++++..+ .+|..+|.|.+.++|+.+
T Consensus 376 gie~~~~------------~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v-~qge~~~~~~~~~lg~f~l~~i~~~~ 442 (579)
T COG0443 376 GIETLGG------------VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHV-FQGEREMAADNKSLGRFELDGIPPAP 442 (579)
T ss_pred ccccCcc------------hhhhHHhcCCCCCcccceEEEeecCCCceeEEEE-EecchhhcccCceeEEEECCCCCCCC
Confidence 9999876 6789999999999999888876554 44444 5777776 999999999999999999
Q ss_pred cccceEEEEEEEcCCCcEEEEEeeeeeeeecccccCCCchhhhccccCCCCCCCCCCCCCCccccccccccCccCCCCCC
Q 004867 475 SERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTT 554 (726)
Q Consensus 475 ~~~~~v~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (726)
.+.++|.|+|.+|.||+++|++.+
T Consensus 443 ~g~~~i~v~f~iD~~gi~~v~a~~-------------------------------------------------------- 466 (579)
T COG0443 443 RGVPQIEVTFDIDANGILNVTAKD-------------------------------------------------------- 466 (579)
T ss_pred CCCCceEEEeccCCCcceEeeeec--------------------------------------------------------
Confidence 999999999999999999998841
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEEeccCCCCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHH
Q 004867 555 DAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYV 634 (726)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~i 634 (726)
+.+++...+.|.... +|++++++.|.+.+..+.+.|...++..+.+|.+++++
T Consensus 467 -------------------------~~~~k~~~i~i~~~~--~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~ 519 (579)
T COG0443 467 -------------------------LGTGKEQSITIKASS--GLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLI 519 (579)
T ss_pred -------------------------ccCCceEEEEEecCC--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Confidence 122345677777665 49999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004867 635 YDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (726)
Q Consensus 635 y~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 700 (726)
|.++..|.+.. .+++++++++.+.+.+++.||+. + .++++.+.++|+...+++..++++
T Consensus 520 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 520 YSLEKALKEIV--KVSEEEKEKIEEAITDLEEALEG--E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHhhhc--cCCHHHHHHHHHHHHHHHHHHhc--c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999997533 89999999999999999999998 2 889999999999999999987654
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=2.2e-55 Score=481.67 Aligned_cols=337 Identities=24% Similarity=0.349 Sum_probs=288.8
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEc----------------------------------------
Q 004867 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG---------------------------------------- 42 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~---------------------------------------- 42 (726)
++|||||||||+||++.+|.++++.++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999994
Q ss_pred -CCceeecHhhHhhhhcCccch--HHHHHHhhccCCCCHHHHHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHH
Q 004867 43 -DKQRFIGTAGAASSTMNPKNS--ISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLG 119 (726)
Q Consensus 43 -~~~~~~G~~A~~~~~~~p~~~--~~~~K~llg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a 119 (726)
++..++|..|+.+...+|.++ +..+|++||.....+ + ....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------~------------~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------Q------------QVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------c------------ceeCHHHHHH
Confidence 345689999999999999988 779999999653110 1 1234899999
Q ss_pred HHHHHHHHHHHHhcCCCcCcEEEEecCCCC-----HHHHHH---HHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCC
Q 004867 120 MLLSNLKAIAESNLNAAVVDCCIGIPVYFT-----DLQRRA---VIDAATIAGLHPLRLFHETTATALAYGIYKTDLPEN 191 (726)
Q Consensus 120 ~~L~~l~~~a~~~~~~~~~~~VitVPa~f~-----~~qR~~---l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~ 191 (726)
++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||++++|++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 999999999999999999999999999998 778766 7999999999999999999999999986422
Q ss_pred CCceEEEEEeCCceeEEEEEEeeCC-------eEEEEEEecCCCccchHHHHHHH-HHHHHHHHh----hhccCc-----
Q 004867 192 DQLNVAFVDIGHASLQVCIAGFKKG-------QLKILGHSFDRSVGGRDFDEVLF-QHFAAKFKE----EYKIDV----- 254 (726)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~~~-------~~~vl~~~~~~~lGG~~iD~~l~-~~l~~~~~~----~~~~~~----- 254 (726)
.+..+|||||||||||+||+++.++ ..+++++.| .++||+|||..|+ +++...|.. ++++++
T Consensus 207 ~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~ 285 (450)
T PRK11678 207 EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPF 285 (450)
T ss_pred CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhh
Confidence 4788999999999999999999754 368999997 6899999999998 678877752 111110
Q ss_pred ------------------------------cCCHHHH------------HHHHHHHHHHhhhcCCCCcccEEeccccCCc
Q 004867 255 ------------------------------SQNARAS------------LRLRVACEKLKKVLSANPEAPLNIECLMEEK 292 (726)
Q Consensus 255 ------------------------------~~~~~~~------------~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~ 292 (726)
..+|+.+ .+|+.+||++|+.||.+..+.+.++.+. .
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~ 363 (450)
T PRK11678 286 WNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--D 363 (450)
T ss_pred hhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--C
Confidence 0133333 3788999999999999999999988654 4
Q ss_pred ceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcc
Q 004867 293 DVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARG 372 (726)
Q Consensus 293 d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~G 372 (726)
++...|||++|+++++++++++..+++++|+++++. ++.|+||||+|++|.|++.|++.||.......+|.++||.|
T Consensus 364 ~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~G 440 (450)
T PRK11678 364 GLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAG 440 (450)
T ss_pred CcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHH
Confidence 578899999999999999999999999999999876 58999999999999999999999986555677999999999
Q ss_pred hHHHHHHh
Q 004867 373 CALQCAIL 380 (726)
Q Consensus 373 Aa~~aa~l 380 (726)
+|++|..+
T Consensus 441 la~~a~~~ 448 (450)
T PRK11678 441 LARWAQVV 448 (450)
T ss_pred HHHHHHhh
Confidence 99999753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.1e-38 Score=342.18 Aligned_cols=307 Identities=21% Similarity=0.264 Sum_probs=235.0
Q ss_pred EEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCC--ce-eecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 4 VGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK--QR-FIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 4 vGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~--~~-~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
+||||||+||+|+.. +...++. .||+|+|..+ .. .+|..|.....+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~--------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA--------------- 61 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE---------------
Confidence 899999999999886 3223433 4999999853 23 6899996655444433310
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
+.+..+|. +...+++..+|+++.+.+..........+|||||++|+..||+++.+|+
T Consensus 62 ----------~~pi~~G~-------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 62 ----------IRPLRDGV-------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ----------EccCCCCe-------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 00111232 2333456666777765443222223447999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
+.||++.+.+++||+|||++|+.... .+..++|||+||||||+++++... ++ ..++.++||++||+.|++
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~-----~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~~ 188 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS-----QPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAIIR 188 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc-----CCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHHH
Confidence 99999999999999999999987432 356799999999999999998763 22 335789999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC----cccEEec--cccCCcceEEEeCHHHHHHHHhHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP----EAPLNIE--CLMEEKDVRGFIKRDEFEQISAPILERV 314 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~efe~l~~~~~~~i 314 (726)
++..+|. +... ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++++.++++
T Consensus 189 ~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i 255 (336)
T PRK13928 189 YIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAI 255 (336)
T ss_pred HHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHH
Confidence 9987653 2221 257999999986531 1223332 2345667789999999999999999999
Q ss_pred HHHHHHHHHHcC--CCCCCcc-EEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHh
Q 004867 315 KRPLEKALAETG--LSVEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAIL 380 (726)
Q Consensus 315 ~~~i~~~l~~~~--~~~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~l 380 (726)
...|+++|+.++ +....++ .|+|+||+|++|.|+++|++.|+.++....||++|||+|||+++..+
T Consensus 256 ~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 256 VQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 999999999986 4456677 79999999999999999999999998889999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=8.7e-38 Score=334.16 Aligned_cols=305 Identities=20% Similarity=0.270 Sum_probs=241.1
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCc---eeecHhhHhhhhcCccchHHHHHHhhccCCCCHH
Q 004867 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQ---RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~---~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~ 79 (726)
.+||||||+|+++ +.++.. ++.|+ ||+|+|+.+. ..+|.+|+.+..++|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~------~------ 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKG-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV------R------ 64 (335)
T ss_pred eEEEEcccccEEE--EECCCc-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE------e------
Confidence 5899999999985 334432 45564 9999998543 379999988877777655210 1
Q ss_pred HHHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcC--cEEEEecCCCCHHHHHHHH
Q 004867 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVV--DCCIGIPVYFTDLQRRAVI 157 (726)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~--~~VitVPa~f~~~qR~~l~ 157 (726)
+..+|. +.--++++.+|++++..++..++..+. .+|||||++|+..||+++.
T Consensus 65 -------------pi~~G~-------------I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 -------------PMKDGV-------------IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred -------------cCCCCc-------------cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 111232 122278899999999988877776553 7999999999999999999
Q ss_pred HHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHH
Q 004867 158 DAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEV 237 (726)
Q Consensus 158 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~ 237 (726)
+|++.||++++.+++||+|||++|++... .+..++|+|+||||||++++.+.+ ++ ..++..+||++||+.
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-----~~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~~ 188 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVD-----EPVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDED 188 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcC-----CCceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHHH
Confidence 99999999999999999999999976422 367899999999999999998754 22 334688999999999
Q ss_pred HHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC----cccEEec--cccCCcceEEEeCHHHHHHHHhHHH
Q 004867 238 LFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP----EAPLNIE--CLMEEKDVRGFIKRDEFEQISAPIL 311 (726)
Q Consensus 238 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~efe~l~~~~~ 311 (726)
|++++...+ +.... ...||++|+.++... ...+.+. .+..+.+..+.+++++|.++|.+++
T Consensus 189 l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l 255 (335)
T PRK13929 189 IVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESL 255 (335)
T ss_pred HHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHH
Confidence 999988654 33321 168999999997632 1223332 2334566789999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC--CCCcc-EEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHH
Q 004867 312 ERVKRPLEKALAETGLS--VEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (726)
Q Consensus 312 ~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~a 377 (726)
.++...|.++|+.++.. ...++ .|+|+||+|++|.+.++|++.|+.++....||+++|++||+..-
T Consensus 256 ~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 256 LHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999998543 35677 69999999999999999999999998888999999999999763
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=5.2e-35 Score=314.16 Aligned_cols=305 Identities=22% Similarity=0.306 Sum_probs=226.5
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCC-ce--eecHhhHhhhhcCccchHHHHHHhhccCCCCHH
Q 004867 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-QR--FIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~-~~--~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~ 79 (726)
.|||||||++++++... .+. ++ .+||+|+|..+ +. ++|.+|..+..+.|.++.. -
T Consensus 7 ~igIDlGt~~~~i~~~~-~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~------~------- 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVKG-KGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA------I------- 64 (334)
T ss_pred eeEEEcCcceEEEEECC-CcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE------E-------
Confidence 58999999999985532 222 32 26999999754 33 7999997766555543210 0
Q ss_pred HHHhhccCCceEEeCCCCceEEEEEEcCceeEE-cHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHH
Q 004867 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVF-TPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (726)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~ 158 (726)
+ +..+|.+ ..+ ..++++..++.++... .. ....+|+|||++|+..||++++.
T Consensus 65 -------~-----pi~~G~i----------~d~~~~~~ll~~~~~~~~~~----~~-~~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 65 -------R-----PMKDGVI----------ADFDVTEKMLKYFIKKVHKN----FR-PSPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred -------e-----cCCCCee----------cCHHHHHHHHHHHHHHHhhc----cC-CCCcEEEEeCCCCCHHHHHHHHH
Confidence 0 1122321 111 1234444444433222 21 12479999999999999999999
Q ss_pred HHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHH
Q 004867 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (726)
Q Consensus 159 Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l 238 (726)
|++.||++.+.+++||+|||++|+.... .+..++|||+||||||++++++.+. . ..++.++||++||+.|
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~~-----~~~~~lvvDiGggttdvs~v~~~~~----~-~~~~~~lGG~~id~~l 187 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPVT-----EPTGSMVVDIGGGTTEVAVISLGGI----V-YSKSVRVGGDKFDEAI 187 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCccc-----CCCeEEEEEeCCCeEEEEEEecCCe----E-eeCCcCChHHHHHHHH
Confidence 9999999999999999999999986432 3567899999999999999987642 1 3346789999999999
Q ss_pred HHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc----ccEEe--ccccCCcceEEEeCHHHHHHHHhHHHH
Q 004867 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE----APLNI--ECLMEEKDVRGFIKRDEFEQISAPILE 312 (726)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~----~~i~i--~~l~~~~d~~~~itr~efe~l~~~~~~ 312 (726)
.+++.+++ +.... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.+.
T Consensus 188 ~~~l~~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 254 (334)
T PRK13927 188 INYVRRNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLS 254 (334)
T ss_pred HHHHHHHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHH
Confidence 99998664 33221 1578999999975432 22333 233456667889999999999999999
Q ss_pred HHHHHHHHHHHHcCCC--CCCcc-EEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHH
Q 004867 313 RVKRPLEKALAETGLS--VEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 313 ~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
++...|.++|+.++.. ...++ .|+|+||+|++|.|+++|++.|+.++....||+++||+|||+++..
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 9999999999998643 22334 5999999999999999999999998989999999999999999765
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.4e-34 Score=310.18 Aligned_cols=305 Identities=20% Similarity=0.287 Sum_probs=223.6
Q ss_pred EEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCC-----c--eeecHhhHhhhhcCccchHHHHHHhhccCCC
Q 004867 4 VGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-----Q--RFIGTAGAASSTMNPKNSISQIKRLIGRQFS 76 (726)
Q Consensus 4 vGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 76 (726)
|||||||+||++++... ++ ++ ..||+|+|..+ + .++|.+|+....+.|.++- ++
T Consensus 5 ~giDlGt~~s~i~~~~~-~~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~-------- 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GI-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AI-------- 65 (333)
T ss_pred eEEecCcceEEEEECCC-CE-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EE--------
Confidence 89999999999988533 22 32 26999999743 3 4689999665544443321 00
Q ss_pred CHHHHHhhccCCceEEeCCCCceEEEEEEcCceeEE-cHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHH
Q 004867 77 DPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVF-TPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRA 155 (726)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~ 155 (726)
.+..+|.+ ..+ ..++++..+|..+... .+.....+|+|||++|+..||++
T Consensus 66 ---------------~pi~~G~i----------~d~~~~~~~~~~~l~~~~~~----~~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 66 ---------------RPMKDGVI----------ADFEVTEKMIKYFIKQVHSR----KSFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred ---------------ecCCCCEE----------EcHHHHHHHHHHHHHHHhcc----cccCCCcEEEEeCCCCCHHHHHH
Confidence 11123321 111 1234444444443322 11122379999999999999999
Q ss_pred HHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHH
Q 004867 156 VIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFD 235 (726)
Q Consensus 156 l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD 235 (726)
+++|++.||++.+.+++||+|||++|+.... .+..++|||+||||||++++++.+- . ..++.++||++||
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-----~~~~~lVvDiG~gttdvs~v~~~~~----~-~~~~~~lGG~did 186 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPVE-----EPTGSMVVDIGGGTTEVAVISLGGI----V-VSRSIRVGGDEFD 186 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCccc-----CCceEEEEEcCCCeEEEEEEEeCCE----E-ecCCccchHHHHH
Confidence 9999999999999999999999999976321 3567899999999999999987641 1 2346789999999
Q ss_pred HHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc-----ccEEecc--ccCCcceEEEeCHHHHHHHHh
Q 004867 236 EVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE-----APLNIEC--LMEEKDVRGFIKRDEFEQISA 308 (726)
Q Consensus 236 ~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~-----~~i~i~~--l~~~~d~~~~itr~efe~l~~ 308 (726)
+.|++++.+++ +.... +..||++|+.++.... ..+.+.. ...+......|++++|.+++.
T Consensus 187 ~~l~~~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~ 253 (333)
T TIGR00904 187 EAIINYIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQ 253 (333)
T ss_pred HHHHHHHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHH
Confidence 99999988664 22221 2679999999975322 1222211 122344567899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-CCc-c-EEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHH
Q 004867 309 PILERVKRPLEKALAETGLSV-EDV-H-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
+.+.++...+.+.|+.++... .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.||+++...
T Consensus 254 ~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 254 EPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999999976432 234 3 6999999999999999999999999999999999999999998653
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.2e-33 Score=303.99 Aligned_cols=306 Identities=23% Similarity=0.280 Sum_probs=229.2
Q ss_pred EEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcC-C--ceeecHhhHhhhhcCccchHHHHHHhhccCCCCHHH
Q 004867 4 VGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-K--QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (726)
Q Consensus 4 vGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~-~--~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~~ 80 (726)
+||||||++|+++++.. ++ ++ + +||+|+|.. + ..++|.+|.....+.|.+.- +
T Consensus 11 vgiDlGt~~t~i~~~~~-~~-~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~---------------~ 66 (335)
T PRK13930 11 IGIDLGTANTLVYVKGK-GI-VL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE---------------A 66 (335)
T ss_pred eEEEcCCCcEEEEECCC-CE-EE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE---------------E
Confidence 89999999999988633 22 22 2 599999975 2 24799999765544443210 0
Q ss_pred HHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH
Q 004867 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 160 (726)
.. +..+|.+ ..-+.+..+++++.+.+..........+|+|+|++|+..+|+++.+|+
T Consensus 67 -----~~-----pi~~G~i-------------~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 67 -----IR-----PLKDGVI-------------ADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred -----ee-----cCCCCeE-------------cCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 00 1123321 112345666666665544433444678999999999999999999999
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
+.+|++.+.+++||+|||++|+.... ....++|||+||||||++++.... ++. .+..++||.+||+.|.+
T Consensus 124 e~~g~~~~~lv~ep~AAa~a~g~~~~-----~~~~~lVvDiG~gttdvs~v~~g~----~~~-~~~~~lGG~~id~~l~~ 193 (335)
T PRK13930 124 EHAGAREVYLIEEPMAAAIGAGLPVT-----EPVGNMVVDIGGGTTEVAVISLGG----IVY-SESIRVAGDEMDEAIVQ 193 (335)
T ss_pred HHcCCCeEEecccHHHHHHhcCCCcC-----CCCceEEEEeCCCeEEEEEEEeCC----EEe-ecCcCchhHHHHHHHHH
Confidence 99999999999999999999876432 245679999999999999987653 222 45789999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcc----cEEec--cccCCcceEEEeCHHHHHHHHhHHHHHH
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEA----PLNIE--CLMEEKDVRGFIKRDEFEQISAPILERV 314 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~----~i~i~--~l~~~~d~~~~itr~efe~l~~~~~~~i 314 (726)
++.+++ +.... ...||++|+.++..... .+.+. .+..+.+..+.|++++|++++.+.++++
T Consensus 194 ~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i 260 (335)
T PRK13930 194 YVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQI 260 (335)
T ss_pred HHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHH
Confidence 998764 33222 15789999999754321 23332 2234455678999999999999999999
Q ss_pred HHHHHHHHHHcCCC--CCCcc-EEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHH
Q 004867 315 KRPLEKALAETGLS--VEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 315 ~~~i~~~l~~~~~~--~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
.+.+.++|+.+... ...++ .|+|+||+|++|.++++|++.|+.++....+|+++||+||++.+..
T Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 261 VEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 99999999987532 22345 4999999999999999999999998888889999999999998764
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1.6e-32 Score=286.34 Aligned_cols=305 Identities=22% Similarity=0.345 Sum_probs=218.5
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCc-e--eecHhhHhhhhcCccchHHHHHHhhccCCCCHH
Q 004867 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQ-R--FIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~-~--~~G~~A~~~~~~~p~~~~~~~K~llg~~~~~~~ 79 (726)
-+||||||+|+.|+. ++.+ ++.++ ||+|+|+.+. . .+|.+|..+..+.|.+. .
T Consensus 3 ~igIDLGT~~t~i~~-~~~G--iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-KGKG--IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------E 58 (326)
T ss_dssp EEEEEE-SSEEEEEE-TTTE--EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------E
T ss_pred ceEEecCcccEEEEE-CCCC--EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------E
Confidence 589999999999854 3333 66666 9999998642 2 58999965444444322 1
Q ss_pred HHHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHH
Q 004867 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA 159 (726)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A 159 (726)
+ +.+..+|. +.=-++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|
T Consensus 59 ~----------~~Pl~~Gv-------------I~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 59 V----------VRPLKDGV-------------IADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp E----------E-SEETTE-------------ESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred E----------EccccCCc-------------ccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 1 11222343 222356777777777766543223456799999999999999999999
Q ss_pred HHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHH
Q 004867 160 ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLF 239 (726)
Q Consensus 160 a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 239 (726)
+..||.+.+.|+.||.|||+..++.- .++...||+|+||||||++++...+ ++.+. ...+||++||+.|.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i-----~~~~g~miVDIG~GtTdiavislgg----iv~s~-si~~gG~~~DeaI~ 185 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDI-----FEPRGSMIVDIGGGTTDIAVISLGG----IVASR-SIRIGGDDIDEAII 185 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--T-----TSSS-EEEEEE-SS-EEEEEEETTE----EEEEE-EES-SHHHHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCC-----CCCCceEEEEECCCeEEEEEEECCC----EEEEE-EEEecCcchhHHHH
Confidence 99999999999999999999998743 2578899999999999999997652 34443 47899999999999
Q ss_pred HHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc----ccEEe--ccccCCcceEEEeCHHHHHHHHhHHHHH
Q 004867 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE----APLNI--ECLMEEKDVRGFIKRDEFEQISAPILER 313 (726)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~----~~i~i--~~l~~~~d~~~~itr~efe~l~~~~~~~ 313 (726)
+|+.+++ ++.+.. ..||++|+.++.... ..+.+ ..+..|....+.|+.+++.+.+++.+.+
T Consensus 186 ~~ir~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~ 252 (326)
T PF06723_consen 186 RYIREKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQ 252 (326)
T ss_dssp HHHHHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHH
Confidence 9998874 455555 789999999965421 23444 3466788899999999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CCc--cEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHH
Q 004867 314 VKRPLEKALAETGLSV-EDV--HMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (726)
Q Consensus 314 i~~~i~~~l~~~~~~~-~~i--~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~a 377 (726)
|...|+++|+...-.. .|| +.|+|+||+|+++.+.++|++.+|.++....||..||+.||....
T Consensus 253 I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 253 IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHH
Confidence 9999999999863221 133 579999999999999999999999999999999999999998654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=3.8e-30 Score=257.06 Aligned_cols=310 Identities=24% Similarity=0.336 Sum_probs=245.4
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcC--Cc---eeecHhhHhhhhcCccchHHHHHHhhccCCC
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD--KQ---RFIGTAGAASSTMNPKNSISQIKRLIGRQFS 76 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~--~~---~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 76 (726)
.-+|||+||.|+.|+.- +.+ +++|+ ||+|++.. +. ..+|.+| |+++|+...
T Consensus 7 ~diGIDLGTanTlV~~k-~kg--IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~ 62 (342)
T COG1077 7 NDIGIDLGTANTLVYVK-GKG--IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPG 62 (342)
T ss_pred ccceeeecccceEEEEc-Cce--EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCC
Confidence 35899999999999664 333 88888 99999986 22 2589999 677777765
Q ss_pred CHHHHHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcC-CCcCcEEEEecCCCCHHHHHH
Q 004867 77 DPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLN-AAVVDCCIGIPVYFTDLQRRA 155 (726)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~-~~~~~~VitVPa~f~~~qR~~ 155 (726)
+.. .+.+..||.+ .--++...+|+|+++......+ .....++++||..-++.+|+|
T Consensus 63 ni~----------aiRPmkdGVI-------------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 63 NIV----------AIRPMKDGVI-------------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred Cce----------EEeecCCcEe-------------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 532 1445556643 2335666777777776643322 344579999999999999999
Q ss_pred HHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHH
Q 004867 156 VIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFD 235 (726)
Q Consensus 156 l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD 235 (726)
+++|++.||.+.+.++.||.|||+..++. ...+..-+|||+||||||++++.+.+ ++... ...+||+.||
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGaglp-----i~ep~G~mvvDIGgGTTevaVISlgg----iv~~~-Sirv~GD~~D 189 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGLP-----IMEPTGSMVVDIGGGTTEVAVISLGG----IVSSS-SVRVGGDKMD 189 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCCc-----ccCCCCCEEEEeCCCceeEEEEEecC----EEEEe-eEEEecchhh
Confidence 99999999999999999999999988653 33566779999999999999998885 33333 5789999999
Q ss_pred HHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC--------cccEEeccccCCcceEEEeCHHHHHHHH
Q 004867 236 EVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP--------EAPLNIECLMEEKDVRGFIKRDEFEQIS 307 (726)
Q Consensus 236 ~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~--------~~~i~i~~l~~~~d~~~~itr~efe~l~ 307 (726)
+.|.+|+.++ |++-+.+ ..||++|....... +..+.-..+..+..-.++++-.+..+.+
T Consensus 190 e~Ii~yvr~~----~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal 256 (342)
T COG1077 190 EAIIVYVRKK----YNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEAL 256 (342)
T ss_pred HHHHHHHHHH----hCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHH
Confidence 9999998877 4566655 67899998874332 1234455677788889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcC--CCCCCccE-EEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhC
Q 004867 308 APILERVKRPLEKALAETG--LSVEDVHM-VEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILS 381 (726)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~--~~~~~i~~-ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls 381 (726)
++.++.|.+.++..|+... +..+-++. ++|+||+|.+..+.+.|++..+.++....+|..|||.|+.+....+.
T Consensus 257 ~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 257 EEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 9999999999999999963 33333454 99999999999999999999999999999999999999998776654
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=1.2e-28 Score=249.80 Aligned_cols=202 Identities=18% Similarity=0.266 Sum_probs=174.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCC
Q 004867 113 TPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPEND 192 (726)
Q Consensus 113 ~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~ 192 (726)
.--+..+++|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~-------- 108 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK-------- 108 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC--------
Confidence 334678999999999999888988999999999999999999999999999999999999999999988531
Q ss_pred CceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHh
Q 004867 193 QLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLK 272 (726)
Q Consensus 193 ~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K 272 (726)
..+|+|+||||||+++++.. . ++.+. +..+||++||+.|++.+ +++. .+||++|
T Consensus 109 --~~~vvDiGggtt~i~i~~~G--~--i~~~~-~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K 162 (239)
T TIGR02529 109 --NGAVVDVGGGTTGISILKKG--K--VIYSA-DEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYK 162 (239)
T ss_pred --CcEEEEeCCCcEEEEEEECC--e--EEEEE-eeecchHHHHHHHHHHh--------CCCH-----------HHHHHHH
Confidence 25999999999999997543 2 34443 77899999999887543 3322 7899999
Q ss_pred hhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHH
Q 004867 273 KVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILT 352 (726)
Q Consensus 273 ~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~ 352 (726)
+.++. .+++.++++++++++...+++.|++. .++.|+|+||+|++|.+++.++
T Consensus 163 ~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~ 215 (239)
T TIGR02529 163 RGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFE 215 (239)
T ss_pred HhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHH
Confidence 87541 45677899999999999999999864 4578999999999999999999
Q ss_pred HHcCCCCCCCCCchhhhhcchHH
Q 004867 353 EFFGKEPRRTMNASECVARGCAL 375 (726)
Q Consensus 353 ~~fg~~v~~~~n~~eaVa~GAa~ 375 (726)
+.||.++..+.||++++|.|||+
T Consensus 216 ~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 216 KQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHhCCCcccCCCCCeehhheeec
Confidence 99999999999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=2.5e-26 Score=237.14 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCc
Q 004867 115 TQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQL 194 (726)
Q Consensus 115 eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~ 194 (726)
-+.....|+++++.++..++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|.+.
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4567778899999999888888999999999999999999999999999999999999999999877431
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhh
Q 004867 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKV 274 (726)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 274 (726)
..+++|+|||||++++++ ++. ++.+ ++..+||++||+.|++++ +++ +.+||++|+.
T Consensus 136 ~~~vvDIGggtt~i~v~~--~g~--~~~~-~~~~~GG~~it~~Ia~~l--------~i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 136 NGAVVDIGGGTTGISILK--DGK--VVYS-ADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEQYKRD 191 (267)
T ss_pred CcEEEEeCCCcEEEEEEE--CCe--EEEE-ecccCchHHHHHHHHHHh--------CCC-----------HHHHHHHHhc
Confidence 258999999999999964 333 3334 378999999999998764 222 2678999987
Q ss_pred cCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHH
Q 004867 275 LSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEF 354 (726)
Q Consensus 275 Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~ 354 (726)
++ +++++.++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.
T Consensus 192 ~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 192 PK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 53 357889999999999999999999863 578999999999999999999999
Q ss_pred cCCCCCCCCCchhhhhcchHHHH
Q 004867 355 FGKEPRRTMNASECVARGCALQC 377 (726)
Q Consensus 355 fg~~v~~~~n~~eaVa~GAa~~a 377 (726)
||.++....||+.++|.|||++|
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.90 E-value=8.8e-22 Score=214.36 Aligned_cols=194 Identities=17% Similarity=0.271 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCcc
Q 004867 151 LQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVG 230 (726)
Q Consensus 151 ~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lG 230 (726)
...+.+.+|++.||+++..++.||.|+|++|.... .....++|+|+||||||++++.. +.+ +. .....+|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-----~~~~~~~vvDiG~gtt~i~i~~~--g~~--~~-~~~i~~G 227 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-----EKELGVCLIDIGGGTTDIAVYTG--GSI--RY-TKVIPIG 227 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-----hhcCCEEEEEeCCCcEEEEEEEC--CEE--EE-Eeeecch
Confidence 45678889999999999999999999999885321 13567999999999999999853 332 22 2357899
Q ss_pred chHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCC------CcccEEeccccCCcceEEEeCHHHHH
Q 004867 231 GRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN------PEAPLNIECLMEEKDVRGFIKRDEFE 304 (726)
Q Consensus 231 G~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~------~~~~i~i~~l~~~~d~~~~itr~efe 304 (726)
|++||+.|.+.+ ++ .+.+||++|+.++.. ....+.+..+ +.+....|+|++|+
T Consensus 228 G~~it~~i~~~l--------~~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~is~~~l~ 286 (371)
T TIGR01174 228 GNHITKDIAKAL--------RT-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSV--GERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHHHHHh--------CC-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccC--CCCCCeEEcHHHHH
Confidence 999999987643 12 137899999999753 2345566544 24567899999999
Q ss_pred HHHhHHHHHHHHHHH-HHHHHcCCCCCCccE-EEEEcCCCChHHHHHHHHHHcCCCCCC------------CCCchhhhh
Q 004867 305 QISAPILERVKRPLE-KALAETGLSVEDVHM-VEVVGSSSRVPAIIKILTEFFGKEPRR------------TMNASECVA 370 (726)
Q Consensus 305 ~l~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~srip~v~~~l~~~fg~~v~~------------~~n~~eaVa 370 (726)
+++++.++++...++ +.|+.++.. .+++. |+|+||+|++|.|++++++.|+.++.. .-+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999998876 66776 999999999999999999999865421 126777888
Q ss_pred cchHHH
Q 004867 371 RGCALQ 376 (726)
Q Consensus 371 ~GAa~~ 376 (726)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 887754
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.88 E-value=7.8e-21 Score=209.29 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=148.1
Q ss_pred HHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchH
Q 004867 154 RAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRD 233 (726)
Q Consensus 154 ~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~ 233 (726)
+.+.+|++.||+++..++.||.|+|.++.... .....++++|+||||||+++++ +|.+ +.+ ....+||++
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-----e~~~gv~vvDiGggtTdisv~~--~G~l--~~~-~~i~~GG~~ 238 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTED-----ERELGVCVVDIGGGTMDIAVYT--GGAL--RHT-KVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-----hhhcCeEEEEeCCCceEEEEEE--CCEE--EEE-eeeechHHH
Confidence 34467999999999999999999999885321 1367799999999999999986 3432 222 357899999
Q ss_pred HHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCC------CcccEEeccccCCcceEEEeCHHHHHHHH
Q 004867 234 FDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN------PEAPLNIECLMEEKDVRGFIKRDEFEQIS 307 (726)
Q Consensus 234 iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~------~~~~i~i~~l~~~~d~~~~itr~efe~l~ 307 (726)
|++.|+..+. ++ +..||++|..+... ....+.++.+.+. ....++|.+|.+++
T Consensus 239 it~dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii 297 (420)
T PRK09472 239 VTSDIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVI 297 (420)
T ss_pred HHHHHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHH
Confidence 9999986542 21 27899999775421 2345666544322 22488999999999
Q ss_pred hHHHHHHHHHHHH-------HHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCC------------CCCchhh
Q 004867 308 APILERVKRPLEK-------ALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRR------------TMNASEC 368 (726)
Q Consensus 308 ~~~~~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~------------~~n~~ea 368 (726)
++.+++|...+++ .|..+++....++.|+|+||+|++|.|++++++.|+.++.. ..+|..|
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHH
Confidence 9977777776654 45666777778999999999999999999999999855422 2489999
Q ss_pred hhcchHHHHHH
Q 004867 369 VARGCALQCAI 379 (726)
Q Consensus 369 Va~GAa~~aa~ 379 (726)
+|.|.++|+..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.77 E-value=2.3e-16 Score=169.15 Aligned_cols=205 Identities=21% Similarity=0.276 Sum_probs=162.0
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEE
Q 004867 141 CIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKI 220 (726)
Q Consensus 141 VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v 220 (726)
++|+|..+ -+.|.+|.+.+|+++..++-+|.|+|.+.... .. +...++++|+||||||+++++-. .+
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~-dE----kelGv~lIDiG~GTTdIai~~~G----~l 225 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTE-DE----KELGVALIDIGGGTTDIAIYKNG----AL 225 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCc-cc----HhcCeEEEEeCCCcEEEEEEECC----EE
Confidence 45555443 56788999999999999999999999876432 11 46789999999999999997654 23
Q ss_pred EEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC------cccEEeccccCCcce
Q 004867 221 LGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP------EAPLNIECLMEEKDV 294 (726)
Q Consensus 221 l~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~------~~~i~i~~l~~~~d~ 294 (726)
..+ +..++||++++..|+.-|.-.| ..||++|..+.... ...+.++...++ .
T Consensus 226 ~~~-~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~--~ 283 (418)
T COG0849 226 RYT-GVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSD--I 283 (418)
T ss_pred EEE-eeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCc--c
Confidence 333 4789999999999997643222 78999999885432 334666655333 3
Q ss_pred EEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCC--C----------C
Q 004867 295 RGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR--R----------T 362 (726)
Q Consensus 295 ~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~--~----------~ 362 (726)
...++|..+.+++++.+.++..+++..|++.++...-...|+|+||++.+|.+.+..++.|+.+++ . .
T Consensus 284 ~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~ 363 (418)
T COG0849 284 PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIA 363 (418)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhc
Confidence 678999999999999999999999999999999867779999999999999999999999975431 1 2
Q ss_pred CCchhhhhcchHHHHHHh
Q 004867 363 MNASECVARGCALQCAIL 380 (726)
Q Consensus 363 ~n~~eaVa~GAa~~aa~l 380 (726)
.+|..++|.|..++++..
T Consensus 364 ~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 364 RNPAFSTAVGLLLYGALM 381 (418)
T ss_pred cCchhhhhHHHHHHHhhc
Confidence 368889999999888754
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.69 E-value=8.5e-17 Score=149.40 Aligned_cols=197 Identities=20% Similarity=0.278 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEE
Q 004867 120 MLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFV 199 (726)
Q Consensus 120 ~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~ 199 (726)
.+.+++++.+++++|..+++..-++|+.--+...+...+..+.||+.++..++||+|||.-..+ ..-.|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l----------~dg~VV 145 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL----------DDGGVV 145 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhcc----------CCCcEE
Confidence 4678899999999999999999999999877778888899999999999999999999854433 223699
Q ss_pred EeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC
Q 004867 200 DIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP 279 (726)
Q Consensus 200 D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~ 279 (726)
|+|||||-+||++-. +|+.+. |...||.+++..|+-+ |++++ .+||..|+.--..
T Consensus 146 DiGGGTTGIsi~kkG----kViy~A-DEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~- 200 (277)
T COG4820 146 DIGGGTTGISIVKKG----KVIYSA-DEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKG- 200 (277)
T ss_pred EeCCCcceeEEEEcC----cEEEec-cCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccc-
Confidence 999999999998766 466666 8999999998777644 45544 5677666532111
Q ss_pred cccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCC
Q 004867 280 EAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEP 359 (726)
Q Consensus 280 ~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v 359 (726)
+|.=-.+.|+++++.+++.+.++..+ +..+.|+||+|.-|.+.+.+++.|+.++
T Consensus 201 ---------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v 254 (277)
T COG4820 201 ---------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQV 254 (277)
T ss_pred ---------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhcccc
Confidence 11123467999999999999998765 5569999999999999999999999999
Q ss_pred CCCCCchhhhhcchHHHH
Q 004867 360 RRTMNASECVARGCALQC 377 (726)
Q Consensus 360 ~~~~n~~eaVa~GAa~~a 377 (726)
..+..|....-+|.|+.+
T Consensus 255 ~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 255 HLPQHPLYMTPLGIASSG 272 (277)
T ss_pred ccCCCcceechhhhhhcc
Confidence 999999888888877543
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.66 E-value=1.6e-15 Score=165.61 Aligned_cols=236 Identities=13% Similarity=0.077 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHH-HHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCce
Q 004867 117 VLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLN 195 (726)
Q Consensus 117 l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~ 195 (726)
.+..+++++....-. ....-..+++++|..++..+|+.+.+. .+..|++.+.++++|.+|+++++. .+
T Consensus 76 ~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~ 144 (371)
T cd00012 76 DMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR----------TT 144 (371)
T ss_pred HHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC----------Ce
Confidence 445555555543111 112246799999999998888888775 667899999999999999988753 57
Q ss_pred EEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhc
Q 004867 196 VAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVL 275 (726)
Q Consensus 196 vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~L 275 (726)
.+|+|+|+++|+++.+.- |.+ +.......++||+++|+.|.+++..... ..+.. .-...++.+|+.+
T Consensus 145 ~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~ 211 (371)
T cd00012 145 GLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKL 211 (371)
T ss_pred EEEEECCCCeeEEEEEEC--CEE-chhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhh
Confidence 899999999999988643 322 2222235789999999999998865421 11111 1124566667665
Q ss_pred CCCCcc---c----------EE-eccccCCcceEEEeCHHHHHHHHhHHH---------HHHHHHHHHHHHHcCC--CCC
Q 004867 276 SANPEA---P----------LN-IECLMEEKDVRGFIKRDEFEQISAPIL---------ERVKRPLEKALAETGL--SVE 330 (726)
Q Consensus 276 s~~~~~---~----------i~-i~~l~~~~d~~~~itr~efe~l~~~~~---------~~i~~~i~~~l~~~~~--~~~ 330 (726)
..-... . .. .-.+.++ ..+.+..+.| .+.+.++ ..+.+.|.+++..+.. ...
T Consensus 212 ~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~ 288 (371)
T cd00012 212 CYVALDIEEEQDKSAKETSLLEKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKD 288 (371)
T ss_pred eeecCCHHHHHHhhhccCCccceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHH
Confidence 321110 0 00 0011122 2345555433 2233333 3677788888877632 223
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCC----------CCCCCCCchhhhhcchHHHHHH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGK----------EPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~----------~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
-++.|+|+||+|++|.+.++|.+.++. .+....+|..++-+||+++|..
T Consensus 289 l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 289 LYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 367899999999999999999988751 1234568889999999998864
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.59 E-value=9.8e-15 Score=159.54 Aligned_cols=300 Identities=14% Similarity=0.146 Sum_probs=181.2
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCc---------eeecHhhHhhhhcCccchHHHHHHhhc
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQ---------RFIGTAGAASSTMNPKNSISQIKRLIG 72 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~---------~~~G~~A~~~~~~~p~~~~~~~K~llg 72 (726)
+.|+||+||.++++++..+..+.+ .+||+|+...+. .++|..|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcE--------EccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 479999999999999876554333 348888775321 35676652110 0
Q ss_pred cCCCCHHHHHhhccCCceEEeCCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCC--CcCcEEEEecCCCCH
Q 004867 73 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNA--AVVDCCIGIPVYFTD 150 (726)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~--~~~~~VitVPa~f~~ 150 (726)
.. .-.+| ..+|.+ .--+.+..+++++... .++. .-..++++.|...+.
T Consensus 59 ~~---------~~~~P-----~~~G~i-------------~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 59 GL---------ELKYP-----IEHGIV-------------ENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred Cc---------eecCC-----CcCCEE-------------eCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 00 00111 123321 2234555666666553 2222 235689999999999
Q ss_pred HHHHHHHHHH-HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCc
Q 004867 151 LQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSV 229 (726)
Q Consensus 151 ~qR~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~l 229 (726)
.+|+.+.+.+ +..|++.+.++++|.+|+++++ ..+.+|+|+|+++|+++.+. +|.. +........+
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~ 175 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG----------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDI 175 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC----------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccC
Confidence 9999998887 4679999999999999998875 35789999999999999875 3322 2222234689
Q ss_pred cchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc---c------------cEEe-ccccCCcc
Q 004867 230 GGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE---A------------PLNI-ECLMEEKD 293 (726)
Q Consensus 230 GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~---~------------~i~i-~~l~~~~d 293 (726)
||.++|+.|.+++...- ...... .-...++.+|+.+..-.. . .... -.+.++..
T Consensus 176 GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~ 245 (373)
T smart00268 176 AGRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNT 245 (373)
T ss_pred cHHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCE
Confidence 99999999998876520 011110 112345555655422100 0 0000 01123333
Q ss_pred eEEEeCHHHH---HHHHhHH-----HHHHHHHHHHHHHHcCCC--CCCccEEEEEcCCCChHHHHHHHHHHcC------C
Q 004867 294 VRGFIKRDEF---EQISAPI-----LERVKRPLEKALAETGLS--VEDVHMVEVVGSSSRVPAIIKILTEFFG------K 357 (726)
Q Consensus 294 ~~~~itr~ef---e~l~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v~~~l~~~fg------~ 357 (726)
+ .+..+.| |.++.|. ...+.+.|.+++..+... ..-.+.|+|+||+|++|.+.++|.+.+. .
T Consensus 246 ~--~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~ 323 (373)
T smart00268 246 I--KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL 323 (373)
T ss_pred E--EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc
Confidence 3 3333322 1223331 235677777777765322 1224679999999999999999988872 1
Q ss_pred --CCCCCCCchhhhhcchHHHHHH
Q 004867 358 --EPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 358 --~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
.+....++..++=.||+++|..
T Consensus 324 ~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 324 KVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred eeEEecCCCCccceEeCcccccCc
Confidence 1333445667777898887754
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.57 E-value=5.5e-13 Score=142.85 Aligned_cols=209 Identities=13% Similarity=0.185 Sum_probs=139.2
Q ss_pred EEEEecCCCCHHHH-HHHHHHHHHh------------CCCceeeechhHHHHHHhhhhcCCC---CCCCCceEEEEEeCC
Q 004867 140 CCIGIPVYFTDLQR-RAVIDAATIA------------GLHPLRLFHETTATALAYGIYKTDL---PENDQLNVAFVDIGH 203 (726)
Q Consensus 140 ~VitVPa~f~~~qR-~~l~~Aa~~A------------Gl~~~~li~Ep~AaAl~y~~~~~~~---~~~~~~~vlv~D~Gg 203 (726)
++...|..+-..++ ..+++..... -+..+.++.||.+|.+.+....... .......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 34588998854443 6676654321 1234678999999988876653211 111346789999999
Q ss_pred ceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccE
Q 004867 204 ASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPL 283 (726)
Q Consensus 204 gt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i 283 (726)
||||++++. ++.+ +....+....|..++.+.|.+++..+. ++..+. . .++.+. |... .+
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~---~~ie~~-------l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASIT--P---YMLEKG-------LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCC--H---HHHHHH-------HHcC---cE
Confidence 999999985 3333 233444678999999999998885432 233332 1 112112 1111 11
Q ss_pred EeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCC
Q 004867 284 NIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTM 363 (726)
Q Consensus 284 ~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~ 363 (726)
.+. .+.. +.+ ++++.++++.+++++...+...+.. ..+++.|+|+||++++ +++.|++.|+. +....
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~~~~~ 320 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-VEKAD 320 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-eEEcC
Confidence 111 1111 122 5668889999999999888887754 3478999999999987 88999999984 35678
Q ss_pred CchhhhhcchHHHHHHhCC
Q 004867 364 NASECVARGCALQCAILSP 382 (726)
Q Consensus 364 n~~eaVa~GAa~~aa~ls~ 382 (726)
||..|.|+|...+|..+.+
T Consensus 321 ~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 321 ESQFANVRGYYKYGELLKN 339 (344)
T ss_pred ChHHHHHHHHHHHHHHHhc
Confidence 9999999999999986543
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.42 E-value=2.7e-11 Score=133.84 Aligned_cols=206 Identities=12% Similarity=0.052 Sum_probs=130.6
Q ss_pred CcEEEEecCCCCHHHHHHHHHHHH-HhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCC
Q 004867 138 VDCCIGIPVYFTDLQRRAVIDAAT-IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKG 216 (726)
Q Consensus 138 ~~~VitVPa~f~~~qR~~l~~Aa~-~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~ 216 (726)
..+++|.|..++..+|+.+.+.+- ..|++.+.+..+|.+++++++............+-||+|+|+|+|+++.+.- |
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~--G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD--G 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC--C
Confidence 458999999999999999887764 4488899999999999987643221100001345699999999999987632 3
Q ss_pred eEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc----------------
Q 004867 217 QLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE---------------- 280 (726)
Q Consensus 217 ~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~---------------- 280 (726)
.. +.......++||+++|+.|.++|.++ +..+... ..+..++.+|+.++....
T Consensus 181 ~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YV-IGSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EE-cccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 22 12222245799999999999987643 1112111 112346667776543110
Q ss_pred -ccEEeccccCCcceEEEeCHHHHHH---HHhHHH------HHHHHHHHHHHHHcCCC--CCCccEEEEEcCCCChHHHH
Q 004867 281 -APLNIECLMEEKDVRGFIKRDEFEQ---ISAPIL------ERVKRPLEKALAETGLS--VEDVHMVEVVGSSSRVPAII 348 (726)
Q Consensus 281 -~~i~i~~l~~~~d~~~~itr~efe~---l~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v~ 348 (726)
..+..+...++....+.|..+.|.- +++|-+ ..+.++|.+++..+... ..-.+.|+|+||+|.+|.+.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 0122222222334567777776642 344422 14567777777776432 22246799999999999999
Q ss_pred HHHHHHcC
Q 004867 349 KILTEFFG 356 (726)
Q Consensus 349 ~~l~~~fg 356 (726)
++|++.+.
T Consensus 330 eRL~~El~ 337 (414)
T PTZ00280 330 KRLQRDVR 337 (414)
T ss_pred HHHHHHHH
Confidence 99998875
No 38
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.34 E-value=3.8e-11 Score=129.18 Aligned_cols=182 Identities=25% Similarity=0.334 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCC-CCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCc
Q 004867 151 LQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPEN-DQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSV 229 (726)
Q Consensus 151 ~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~-~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~l 229 (726)
..-..+.++++.|||++..+--++.|.+-.|......++.. ....++++|+|+.+|.++++.- |. .+.+. ...+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~--g~--~~f~R-~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQN--GK--PIFSR-SIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEET--TE--EEEEE-EES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEEC--CE--EEEEE-EEee
Confidence 45677889999999998877667777654443322233321 3467999999999999999653 33 23333 5789
Q ss_pred cchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhH
Q 004867 230 GGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAP 309 (726)
Q Consensus 230 GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~ 309 (726)
||.++++.|++.+. ++. ..|+..|..-+... +...+.+.+
T Consensus 211 G~~~l~~~i~~~~~--------i~~-----------~~Ae~~k~~~~l~~---------------------~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELG--------IDF-----------EEAEELKRSGGLPE---------------------EYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT----------H-----------HHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcC--------CCH-----------HHHHHHHhcCCCCc---------------------chHHHHHHH
Confidence 99999999997632 222 55666665421100 122344445
Q ss_pred HHHHHHHHHHHHHHH--cCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCC---------CCC----------Cchhh
Q 004867 310 ILERVKRPLEKALAE--TGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR---------RTM----------NASEC 368 (726)
Q Consensus 310 ~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~---------~~~----------n~~ea 368 (726)
.++++..-|.+.++- .......|+.|+|+||++++|.+.+.|++.+|.++. ... .|..+
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~a 330 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFA 330 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHH
Confidence 555555555554442 122345799999999999999999999999985431 111 26678
Q ss_pred hhcchHHHH
Q 004867 369 VARGCALQC 377 (726)
Q Consensus 369 Va~GAa~~a 377 (726)
+|.|.|+.+
T Consensus 331 vA~GLAlR~ 339 (340)
T PF11104_consen 331 VALGLALRG 339 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999999864
No 39
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.34 E-value=1.6e-10 Score=125.09 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCC-CCCCc-eEEEEEeCCceeEEEEEEeeCCeEEEEEEecCC
Q 004867 150 DLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP-ENDQL-NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDR 227 (726)
Q Consensus 150 ~~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~-~~~~~-~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~ 227 (726)
....+.+.++++.||+++..+..+|.|.+-.+.+....+. ..... .++++|+|+++|+++++.-. . ++.+. ..
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g--~--~~~~r-~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPG--R--MLFTR-EV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECC--e--EEEEE-Ee
Confidence 4567888999999999999999999998765531111111 11233 49999999999999997533 2 22232 67
Q ss_pred CccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHH
Q 004867 228 SVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQIS 307 (726)
Q Consensus 228 ~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~ 307 (726)
.+||.+|++.|.+. ++++. ..||+.|........ . -.+++
T Consensus 217 ~~G~~~i~~~i~~~--------~~~~~-----------~~Ae~~k~~~~~~~~-------------~--------~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRA--------YGLNP-----------EEAGEAKQQGGLPLL-------------Y--------DPEVL 256 (348)
T ss_pred echHHHHHHHHHHH--------cCCCH-----------HHHHHHHhcCCCCCc-------------h--------hHHHH
Confidence 89999999988743 23322 678888765332110 0 01344
Q ss_pred hHHHHHHHHHHHHHHHHc--CCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCC
Q 004867 308 APILERVKRPLEKALAET--GLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEP 359 (726)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v 359 (726)
++.++++..-|.+.++-. ......++.|+|+||+++++.+.+.+++.||.++
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v 310 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPT 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCe
Confidence 555555555555555432 2223468999999999999999999999998554
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.27 E-value=4.4e-11 Score=131.85 Aligned_cols=308 Identities=15% Similarity=0.190 Sum_probs=174.6
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCcccceEEEEcCCc-----eeecHhhHhhhhcCccchHHHHHHhhccCCC
Q 004867 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQ-----RFIGTAGAASSTMNPKNSISQIKRLIGRQFS 76 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~n~~g~~~~PS~V~~~~~~-----~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 76 (726)
.+|-||+|+.+++++++.+..+.+ .+||+++..... .++|..+.... +
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~--------v~ps~~~~~~~~~~~~~~~~g~~~~~~~---~---------------- 57 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRV--------VIPSVVGRPRDKNSSNDYYVGDEALSPR---S---------------- 57 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SE--------EEESEEEEESSSSSSSSCEETHHHHHTG---T----------------
T ss_pred CEEEEECCCceEEEEECCCCCCCC--------cCCCccccccccccceeEEeecccccch---h----------------
Confidence 578999999999999965443333 358887764432 35676532100 0
Q ss_pred CHHHHHhhccCCceEEe-CCCCceEEEEEEcCceeEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHH
Q 004867 77 DPELQRDLKSLPFAVTE-GPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRA 155 (726)
Q Consensus 77 ~~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~ 155 (726)
...+.. ..+| .+.--+.+..+++++.... -.....-..++++.|..++..+|+.
T Consensus 58 -----------~~~~~~p~~~g-------------~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 58 -----------NLELRSPIENG-------------VIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp -----------GEEEEESEETT-------------EESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred -----------heeeeeecccc-------------ccccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 000000 0112 1222244555666655432 1112234569999999999999988
Q ss_pred HHHHH-HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHH
Q 004867 156 VIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDF 234 (726)
Q Consensus 156 l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~i 234 (726)
+.+.+ +..|++.+.+++++.+|+++++. .+-||||+|++.|.++-+ .+|.. +........+||+++
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~----------~tglVVD~G~~~t~v~pV--~dG~~-~~~~~~~~~~GG~~l 179 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGR----------TTGLVVDIGYSSTSVVPV--VDGYV-LPHSIKRSPIGGDDL 179 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTB----------SSEEEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHH
T ss_pred hhhhhhcccccceeeeeeccccccccccc----------ccccccccceeeeeeeee--eeccc-cccccccccccHHHH
Confidence 77765 46699999999999999887753 356999999999998775 33322 111222467999999
Q ss_pred HHHHHHHHHHH-HH--hhhccCcc----CCHHHHHHHHHHHHHHhhhc---CC------------CCcccEEeccccCCc
Q 004867 235 DEVLFQHFAAK-FK--EEYKIDVS----QNARASLRLRVACEKLKKVL---SA------------NPEAPLNIECLMEEK 292 (726)
Q Consensus 235 D~~l~~~l~~~-~~--~~~~~~~~----~~~~~~~rL~~~ae~~K~~L---s~------------~~~~~i~i~~l~~~~ 292 (726)
++.|.+.|..+ +. ..+..... ...-....-...++.+|+.+ +. .....+.+ .++.
T Consensus 180 t~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~ 256 (393)
T PF00022_consen 180 TEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ 256 (393)
T ss_dssp HHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS
T ss_pred HHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccc---cccc
Confidence 99999888873 11 00000000 00000011112333344332 11 11112222 2333
Q ss_pred ceEEEeCHHHHHHHHhHHHH----------------HHHHHHHHHHHHcCCCCC--CccEEEEEcCCCChHHHHHHHHHH
Q 004867 293 DVRGFIKRDEFEQISAPILE----------------RVKRPLEKALAETGLSVE--DVHMVEVVGSSSRVPAIIKILTEF 354 (726)
Q Consensus 293 d~~~~itr~efe~l~~~~~~----------------~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~srip~v~~~l~~~ 354 (726)
.+.+..+.| .+.+.+++ .+.++|..++..+..... -...|+|+||+|++|.+.++|.+.
T Consensus 257 --~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~e 333 (393)
T PF00022_consen 257 --TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQE 333 (393)
T ss_dssp --EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHH
T ss_pred --ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHH
Confidence 455665554 23333322 577888888877653321 147899999999999999999877
Q ss_pred cCC--------CCCCCC-CchhhhhcchHHHHHHh
Q 004867 355 FGK--------EPRRTM-NASECVARGCALQCAIL 380 (726)
Q Consensus 355 fg~--------~v~~~~-n~~eaVa~GAa~~aa~l 380 (726)
+.. ++.... ++..++=.||+++|..-
T Consensus 334 L~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 334 LRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 631 233334 78899999999988643
No 41
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.25 E-value=3.7e-10 Score=120.37 Aligned_cols=208 Identities=14% Similarity=0.122 Sum_probs=128.3
Q ss_pred CcCcEEEEecCCCCHHHHHHHHHHHHHh---------CCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCcee
Q 004867 136 AVVDCCIGIPVYFTDLQRRAVIDAATIA---------GLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASL 206 (726)
Q Consensus 136 ~~~~~VitVPa~f~~~qR~~l~~Aa~~A---------Gl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~ 206 (726)
.+..+|+..|..+...+|..+++..... -+..+.+++||.+|.+.|........ .....++|+|+|++||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~-~~~~~~lVIDIG~~Tt 179 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL-TGKEQSLIIDPGYFTF 179 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc-cCcCcEEEEecCCCee
Confidence 3556999999999998999998886532 23467889999999888765432111 1356789999999999
Q ss_pred EEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEec
Q 004867 207 QVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIE 286 (726)
Q Consensus 207 dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~ 286 (726)
|+.++. +..+ +....+....|-.++-+.|.+.+.+++ +.+...+...+. .+...-|. +.+
T Consensus 180 D~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~~i~---~~l~~g~~---------~~~- 239 (320)
T TIGR03739 180 DWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDIDRID---LALRTGKQ---------PRI- 239 (320)
T ss_pred eeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHHHHH---HHHHhCCc---------eee-
Confidence 998763 4344 444555678898888888887776654 443111111111 11111110 000
Q ss_pred cccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCC-CCCCCCCc
Q 004867 287 CLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK-EPRRTMNA 365 (726)
Q Consensus 287 ~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~-~v~~~~n~ 365 (726)
.+.. +.|+ +.-+..+..++++..-+...+ + ...+++.|+|+||++. .+++.|++.|+. .+....||
T Consensus 240 ---~gk~--~di~--~~~~~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 ---YQKP--VDIK--RCLELAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred ---ccee--cCch--HHHHHHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 0111 1121 111222333333333333322 2 1246899999999987 568999999975 44456799
Q ss_pred hhhhhcchHHHH
Q 004867 366 SECVARGCALQC 377 (726)
Q Consensus 366 ~eaVa~GAa~~a 377 (726)
..|.|+|-..+|
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
No 42
>PTZ00281 actin; Provisional
Probab=99.22 E-value=3.2e-10 Score=123.61 Aligned_cols=218 Identities=11% Similarity=0.113 Sum_probs=136.4
Q ss_pred cCcEEEEecCCCCHHHHHHHHHH-HHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 004867 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (726)
Q Consensus 137 ~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (726)
-..+++|-|..+...+|+.|.+. .+..+++.+.+...|.+++++++ ..+-+|+|+|.+.|.++-+.-.
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g----------~~tglVVDiG~~~t~v~PV~dG- 169 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG----------RTTGIVMDSGDGVSHTVPIYEG- 169 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC----------CceEEEEECCCceEEEEEEEec-
Confidence 35688999999999999998875 56678888899999999887654 2466999999999998754322
Q ss_pred CeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC---c---------ccE
Q 004867 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP---E---------APL 283 (726)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---~---------~~i 283 (726)
. -+.......++||.++++.|.+.|... +..... . .- +..++.+|+.+.... . ...
T Consensus 170 -~-~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (376)
T PTZ00281 170 -Y-ALPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSAL 237 (376)
T ss_pred -c-cchhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCccc
Confidence 1 122223356799999999999877543 111111 0 00 134556666643211 0 000
Q ss_pred Eec-cccCCcceEEEeCHHHH---HHHHhHHH-----HHHHHHHHHHHHHcCCC--CCCccEEEEEcCCCChHHHHHHHH
Q 004867 284 NIE-CLMEEKDVRGFIKRDEF---EQISAPIL-----ERVKRPLEKALAETGLS--VEDVHMVEVVGSSSRVPAIIKILT 352 (726)
Q Consensus 284 ~i~-~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v~~~l~ 352 (726)
... .|.++. .+.|..+.| |-+++|-+ ..|.++|.+++..+... ..-.+.|+|+||+|.+|.+.++|+
T Consensus 238 ~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 238 EKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred ceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 001 122333 344554443 23344322 24566777777765322 122468999999999999999998
Q ss_pred HHcC----C----CCCCCCCchhhhhcchHHHHHH
Q 004867 353 EFFG----K----EPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 353 ~~fg----~----~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
..+. . ++..+.++..++=+|++++|..
T Consensus 316 ~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 316 KELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 8763 1 1333446677888999988863
No 43
>PTZ00452 actin; Provisional
Probab=99.21 E-value=1.4e-09 Score=118.40 Aligned_cols=214 Identities=15% Similarity=0.149 Sum_probs=134.8
Q ss_pred cCcEEEEecCCCCHHHHHHHHHHH-HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 004867 137 VVDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (726)
Q Consensus 137 ~~~~VitVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (726)
-..+++|-|...+..+|+.|.+.+ +..+.+.+.+.+.+.+++++++ ..+-+|+|+|.|.|.++-+. +
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g----------~~tglVVDiG~~~t~v~PV~--d 167 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG----------KTIGLVVDSGEGVTHCVPVF--E 167 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC----------CceeeeecCCCCcceEEEEE--C
Confidence 456899999999999999887764 4568888888999998887654 24569999999999987653 3
Q ss_pred CeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc---------------
Q 004867 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE--------------- 280 (726)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~--------------- 280 (726)
|.. +.......++||.++++.|.+.|..+ +..+.... . +..++.+|+.++....
T Consensus 168 G~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~ 236 (375)
T PTZ00452 168 GHQ-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQ 236 (375)
T ss_pred CEE-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCc
Confidence 322 22222346799999999998877532 11121110 0 1234445555432110
Q ss_pred -ccEEeccccCCcceEEEeCHHHHH---HHHhHHH-----HHHHHHHHHHHHHcCCC--CCCccEEEEEcCCCChHHHHH
Q 004867 281 -APLNIECLMEEKDVRGFIKRDEFE---QISAPIL-----ERVKRPLEKALAETGLS--VEDVHMVEVVGSSSRVPAIIK 349 (726)
Q Consensus 281 -~~i~i~~l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v~~ 349 (726)
.... |.++. .+.+..+.|. -+++|-+ ..+.+++.+++..+... ..-...|+|+||+|.+|.+.+
T Consensus 237 ~~~y~---LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~ 311 (375)
T PTZ00452 237 DSPYK---LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIAN 311 (375)
T ss_pred CceEE---CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHH
Confidence 0111 22333 3456666551 2333322 23567777777765322 223468999999999999999
Q ss_pred HHHHHcC----C--C--CCCCCCchhhhhcchHHHHH
Q 004867 350 ILTEFFG----K--E--PRRTMNASECVARGCALQCA 378 (726)
Q Consensus 350 ~l~~~fg----~--~--v~~~~n~~eaVa~GAa~~aa 378 (726)
+|...+. . + +..+.+...++=.|++++|.
T Consensus 312 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 312 RLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 9987763 1 1 22334556677789988885
No 44
>PTZ00004 actin-2; Provisional
Probab=99.17 E-value=1.2e-09 Score=119.31 Aligned_cols=217 Identities=10% Similarity=0.074 Sum_probs=136.3
Q ss_pred cCcEEEEecCCCCHHHHHHHHHHH-HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 004867 137 VVDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (726)
Q Consensus 137 ~~~~VitVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (726)
...+++|-|..++..+|+.+.+.+ +..|++.+.+..+|.+++++++ ..+-+|+|+|++.|+++-+. +
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g----------~~tglVVDiG~~~t~v~pV~--d 168 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG----------RTTGIVLDSGDGVSHTVPIY--E 168 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC----------CceEEEEECCCCcEEEEEEE--C
Confidence 456889999999999998776664 5679999999999999987664 24569999999999987653 2
Q ss_pred CeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc-------------cc
Q 004867 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE-------------AP 282 (726)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~-------------~~ 282 (726)
|.. +.......++||.++++.|.+.|..+ +..+.. ... ...++.+|+.+..... ..
T Consensus 169 G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (378)
T PTZ00004 169 GYS-LPHAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDK 237 (378)
T ss_pred CEE-eecceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccc
Confidence 322 22233356799999999999987543 111111 111 1234555555421100 00
Q ss_pred EEec-cccCCcceEEEeCHHHHH---HHHhHH------HHHHHHHHHHHHHHcCCC--CCCccEEEEEcCCCChHHHHHH
Q 004867 283 LNIE-CLMEEKDVRGFIKRDEFE---QISAPI------LERVKRPLEKALAETGLS--VEDVHMVEVVGSSSRVPAIIKI 350 (726)
Q Consensus 283 i~i~-~l~~~~d~~~~itr~efe---~l~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v~~~ 350 (726)
.... .+.++. .+.+..+.|. -+++|- ...+.++|.+++..+..+ ..-...|+|+||+|.+|.+.++
T Consensus 238 ~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 315 (378)
T PTZ00004 238 YEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPER 315 (378)
T ss_pred cceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHH
Confidence 0111 122333 3445555442 344443 234567777777765432 2224689999999999999999
Q ss_pred HHHHcCC--------CCCCCCCchhhhhcchHHHHH
Q 004867 351 LTEFFGK--------EPRRTMNASECVARGCALQCA 378 (726)
Q Consensus 351 l~~~fg~--------~v~~~~n~~eaVa~GAa~~aa 378 (726)
|...+.. ++....++..++=+||+++|.
T Consensus 316 L~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 316 LTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9887731 123344677777789888875
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.14 E-value=3.5e-09 Score=115.27 Aligned_cols=217 Identities=10% Similarity=0.063 Sum_probs=135.5
Q ss_pred cCcEEEEecCCCCHHHHHHHHHHH-HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 004867 137 VVDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (726)
Q Consensus 137 ~~~~VitVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (726)
-..+++|-|+.++..+|+.+.+.+ +..|++.+.+.+.+.+++++++ ..+-+|+|+|.+.|.++-+. +
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g----------~~tglVVD~G~~~t~v~PV~--~ 173 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG----------KTNGTVLDCGDGVCHCVSIY--E 173 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC----------CceEEEEeCCCCceEEEEEE--C
Confidence 446889999999999999886664 5568888899999999887764 24679999999999987653 3
Q ss_pred CeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC-----------cccEE
Q 004867 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP-----------EAPLN 284 (726)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~-----------~~~i~ 284 (726)
|.. +.......++||.++++.|.+.+.+. +..... . .-+..++.+|+.+..-. .....
T Consensus 174 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~ 242 (380)
T PTZ00466 174 GYS-ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT-S----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTT 242 (380)
T ss_pred CEE-eecceeEecCchhHHHHHHHHHHHhc-----CCCCCc-H----HHHHHHHHHHHhCeEecCChHHHHhhccccccc
Confidence 322 22222346899999999999877532 111111 0 11233455565542110 00000
Q ss_pred ec-cccCCcceEEEeCHHHH---HHHHhHHH-----HHHHHHHHHHHHHcCCC--CCCccEEEEEcCCCChHHHHHHHHH
Q 004867 285 IE-CLMEEKDVRGFIKRDEF---EQISAPIL-----ERVKRPLEKALAETGLS--VEDVHMVEVVGSSSRVPAIIKILTE 353 (726)
Q Consensus 285 i~-~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v~~~l~~ 353 (726)
.. .|.++. .+.|..+.| |-+++|-+ ..+.++|.+.+..+..+ ..-...|+|+||+|.+|.+.++|..
T Consensus 243 ~~y~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~ 320 (380)
T PTZ00466 243 LPYILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLN 320 (380)
T ss_pred eeEECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHH
Confidence 11 122332 345666555 23333321 24566777777765332 2224789999999999999999988
Q ss_pred HcCC--------CCCCCCCchhhhhcchHHHHH
Q 004867 354 FFGK--------EPRRTMNASECVARGCALQCA 378 (726)
Q Consensus 354 ~fg~--------~v~~~~n~~eaVa~GAa~~aa 378 (726)
.+.. .+....++..++=+||+++|.
T Consensus 321 EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 321 EIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 7731 123344666777789988875
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=6.1e-08 Score=98.43 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCC-CCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccc
Q 004867 153 RRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDL-PENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGG 231 (726)
Q Consensus 153 R~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~-~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG 231 (726)
-....+|++.|||....+--|..|.--+|.+.-..+ +......++|+|+|+..+.++++.-. +.+.+. +..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~g----k~ly~r-~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDG----KILYTR-EVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECC----eeeeEe-eccCcH
Confidence 345678999999998888788888766665222222 22224458999999999999998655 355555 789999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHH
Q 004867 232 RDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPIL 311 (726)
Q Consensus 232 ~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~ 311 (726)
+.+++.|.+. |+++. ..++.+|....... ++. -+-+....+.+.
T Consensus 226 ~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~-------------~y~----~~vl~~f~~~l~ 269 (354)
T COG4972 226 DQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT-------------DYG----SEVLRPFLGELT 269 (354)
T ss_pred HHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC-------------chh----HHHHHHHHHHHH
Confidence 9999998754 34433 45666666543322 111 112233444555
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCC
Q 004867 312 ERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEP 359 (726)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v 359 (726)
++|.+.|+-.+...+ ..+|++|+|.||+.++-.+.+.+.+.++.+.
T Consensus 270 ~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~~t 315 (354)
T COG4972 270 QEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSIPT 315 (354)
T ss_pred HHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCCCe
Confidence 555555555555554 3589999999999999999999999987543
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.89 E-value=7.3e-08 Score=98.94 Aligned_cols=170 Identities=18% Similarity=0.204 Sum_probs=105.4
Q ss_pred eeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHHHh
Q 004867 169 RLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKE 248 (726)
Q Consensus 169 ~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~ 248 (726)
..++|.+|-+.+..... | ..-.|+|+||..+-+.+++ ++.+.-.........|+..|.+.+++.+
T Consensus 73 ~~~~ei~~~~~g~~~~~---~----~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l------ 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA---P----EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL------ 137 (248)
T ss_pred CceEEhhHHHHHHHHHC---C----CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc------
Confidence 46788888765543321 2 2235999999988877776 5544333344456788888888887653
Q ss_pred hhccCccCCHHHHHHHHHHHHHHhhhc----CCCCcccEEecc-ccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHH
Q 004867 249 EYKIDVSQNARASLRLRVACEKLKKVL----SANPEAPLNIEC-LMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALA 323 (726)
Q Consensus 249 ~~~~~~~~~~~~~~rL~~~ae~~K~~L----s~~~~~~i~i~~-l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~ 323 (726)
++++ ++++.++..- .-+....+..+. +.... .-..++ ++++..++..+...+.+.+.
T Consensus 138 --~~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~~---~di~~~~~~~va~~i~~~~~ 199 (248)
T TIGR00241 138 --GVSV-----------EELGSLAEKADRKAKISSMCTVFAESELISLL--AAGVKK---EDILAGVYESIAERVAEMLQ 199 (248)
T ss_pred --CCCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHH--HCCCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 3332 2333333221 111111222211 00000 001223 35666666666666666655
Q ss_pred HcCCCCCCcc-EEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHH
Q 004867 324 ETGLSVEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (726)
Q Consensus 324 ~~~~~~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~ 376 (726)
..+ ++ .|+|+||.++.|.+.+.+++.++.++..+.+|..+.|+|||++
T Consensus 200 ~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 200 RLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred hcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 432 44 7999999999999999999999999989999999999999973
No 48
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.83 E-value=1.7e-07 Score=99.77 Aligned_cols=173 Identities=16% Similarity=0.221 Sum_probs=96.1
Q ss_pred CceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHH
Q 004867 166 HPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (726)
Q Consensus 166 ~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~ 245 (726)
..+.+++|+.||.+.+... +. +...+||+|+||+|+|++++.-. .-.+-...+...+|-..+-..+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~---~~--~~~~~lVVDIGG~T~Dv~~v~~~--~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMD---LD--EDESVLVVDIGGRTTDVAVVRGG--LPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHT---S---TTSEEEEEEE-SS-EEEEEEEGG--G--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred eeEEEEcccHHHHHHHHHh---hc--ccCcEEEEEcCCCeEEeeeecCC--ccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 3678899999999887654 21 34679999999999999998532 11233344467899998888888766541
Q ss_pred HHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 004867 246 FKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAET 325 (726)
Q Consensus 246 ~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~ 325 (726)
+...+. ..++.+-... .....+ .....+.+ ..+++.++++..++++.+-|.+.+..
T Consensus 214 -----~~~~s~---------~~~~~ii~~~--~~~~~~--~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~- 269 (318)
T PF06406_consen 214 -----GIDTSE---------LQIDDIIRNR--KDKGYL--RQVINDED-----VIDDVSEVIEEAVEELINRILRELGD- 269 (318)
T ss_dssp -----SBHHHH---------HHHHHHHHTT--T-HHHH--HHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred -----cCCCcH---------HHHHHHHHhh--hcccee--cccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 111100 0111110000 000000 00000100 13344444555554544444444432
Q ss_pred CCCCCCccEEEEEcCCCChHHHHHHHHHHcC---CCCCCCCCchhhhhcchH
Q 004867 326 GLSVEDVHMVEVVGSSSRVPAIIKILTEFFG---KEPRRTMNASECVARGCA 374 (726)
Q Consensus 326 ~~~~~~i~~ViLvGG~srip~v~~~l~~~fg---~~v~~~~n~~eaVa~GAa 374 (726)
..+++.|+|+||++. .+.+.|++.|+ ..+...-||+.|-|+|-+
T Consensus 270 ---~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 ---FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp ---S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ---hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 357899999999964 57899999987 356678899999999864
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.78 E-value=5.7e-07 Score=92.71 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHH-HHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCc
Q 004867 116 QVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQL 194 (726)
Q Consensus 116 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~ 194 (726)
+++.++++|..+..- +....-.-++||-|++=+...|+.+.+. .+...++...|..+|+++|++-| ..
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G----------rs 154 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG----------RS 154 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC----------CC
Confidence 456666666664211 1222335689999999888899877665 56667788888888888887654 35
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHH
Q 004867 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (726)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~ 245 (726)
+.||+|+|++++.++-+ .+|.+--.+.. -..+||+.++..+.+.|..+
T Consensus 155 talVvDiGa~~~svsPV--~DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPV--HDGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeee--ecceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 68999999999998875 34433333443 57899999999999988776
No 50
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.61 E-value=1.1e-06 Score=96.50 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=70.1
Q ss_pred cCcEEEEecCCCCHHHHHHHHHH-HHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 004867 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (726)
Q Consensus 137 ~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (726)
-..+++|-|..+...+|..+.+. .+...++.+.+...+.+++++.+. . ..+.+|+|+|.+.|+++=|--.
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~--~------~~~g~ViD~G~~~t~v~PV~DG- 176 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGS--S------DETGLVIDSGDSVTHVIPVVDG- 176 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCC--C------CCceEEEEcCCCceeeEeeecc-
Confidence 34699999999999999877665 455566667777776666655432 1 2478999999999998765322
Q ss_pred CeEEEEEEecCCCccchHHHHHHHHHHHHH
Q 004867 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (726)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~ 245 (726)
+.+.....-..+||++++..|.+.|...
T Consensus 177 --~~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 177 --IVLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred --ccccccceeeecCcHHHHHHHHHHHhhc
Confidence 1222233356799999999999888774
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.59 E-value=9.6e-06 Score=83.35 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=42.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHcCCCCC-CCCCchhhhhcchHHHHHH
Q 004867 333 HMVEVVGSSSRVPAIIKILTEFFGKEPR-RTMNASECVARGCALQCAI 379 (726)
Q Consensus 333 ~~ViLvGG~srip~v~~~l~~~fg~~v~-~~~n~~eaVa~GAa~~aa~ 379 (726)
..|+|+||.++.|.+.+.+++.+|.++. .+.+|+.+-|+|||++|.-
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999998876 5778999999999999864
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.56 E-value=3.7e-07 Score=98.39 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=91.9
Q ss_pred cEEEEecCCCCHHHHHHHHHHHH--------HhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEE
Q 004867 139 DCCIGIPVYFTDLQRRAVIDAAT--------IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCI 210 (726)
Q Consensus 139 ~~VitVPa~f~~~qR~~l~~Aa~--------~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv 210 (726)
-.+||.+...-.+-++.+..+.. .||++.-.++. |.|++.+.. .. + ....++++|+|||||++++
T Consensus 90 ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avL-se-E----ke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 90 AVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTL-SE-E----RNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred EEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHh-hh-h----ccCceEEEEeCCCceEEEE
Confidence 46788877654444444433221 26776666666 888877654 22 2 4678999999999999999
Q ss_pred EEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccC
Q 004867 211 AGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLME 290 (726)
Q Consensus 211 v~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~ 290 (726)
+.-. .++.+. ..++||+.++.. -+ ..+ ..-.|. ..+|++. +-..+.
T Consensus 163 f~~G----~l~~T~-~l~vGG~~IT~D-~~---------~~i-~yis~~-~~~l~~~---~~~~~~-------------- 208 (475)
T PRK10719 163 FDAG----KVIDTA-CLNVGGRLIETD-SQ---------GRV-TYISPP-GQMILDE---LGLAIT-------------- 208 (475)
T ss_pred EECC----EEEEEE-EEecccceEEEC-CC---------CCE-EEEChH-HHHHHHH---cCCCcc--------------
Confidence 7654 355554 788999988643 11 001 001111 1111111 111111
Q ss_pred CcceEEEeCHHHHHHHHhHHHHHHHHHHHH-------HHHH-cCCC-CCCccEEEEEcCCCCh
Q 004867 291 EKDVRGFIKRDEFEQISAPILERVKRPLEK-------ALAE-TGLS-VEDVHMVEVVGSSSRV 344 (726)
Q Consensus 291 ~~d~~~~itr~efe~l~~~~~~~i~~~i~~-------~l~~-~~~~-~~~i~~ViLvGG~sri 344 (726)
.--.++.+++..+|+-+.+-+.+.+.. .|-. ..++ ...++.|.+.||-+..
T Consensus 209 ---~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 209 ---DGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred ---ccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 112456778888777766666655531 1111 1222 3568999999998765
No 53
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.46 E-value=3.5e-05 Score=89.91 Aligned_cols=267 Identities=19% Similarity=0.264 Sum_probs=157.7
Q ss_pred eEEcHHHHHHHHHHHHHHHHHHhcCC--------------CcCcEEEEecCCCCHHHHHHHHHHHHHh--------CCC-
Q 004867 110 RVFTPTQVLGMLLSNLKAIAESNLNA--------------AVVDCCIGIPVYFTDLQRRAVIDAATIA--------GLH- 166 (726)
Q Consensus 110 ~~~~~eel~a~~L~~l~~~a~~~~~~--------------~~~~~VitVPa~f~~~qR~~l~~Aa~~A--------Gl~- 166 (726)
..||-.-++.++|..+...|-.+.+. ....+++|||+-....+|+.+++.++.| |+.
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~ 494 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHP 494 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35677788888888888877665542 2457999999999999999998888765 432
Q ss_pred --------------------ceeeechhHHHHHHhhhh------------------cCCCC------CCCCceEEEEEeC
Q 004867 167 --------------------PLRLFHETTATALAYGIY------------------KTDLP------ENDQLNVAFVDIG 202 (726)
Q Consensus 167 --------------------~~~li~Ep~AaAl~y~~~------------------~~~~~------~~~~~~vlv~D~G 202 (726)
+..=-+|.||.-+-|... +.+.. ..+.-+|.-+|+|
T Consensus 495 ~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIG 574 (1002)
T PF07520_consen 495 WDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIG 574 (1002)
T ss_pred CCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecC
Confidence 111135555543333111 11111 1124468999999
Q ss_pred CceeEEEEEEee----CC-eEEEEE---EecCCCccchHHHHHHHH-HHHHHHHhhh---cc-------------CccCC
Q 004867 203 HASLQVCIAGFK----KG-QLKILG---HSFDRSVGGRDFDEVLFQ-HFAAKFKEEY---KI-------------DVSQN 257 (726)
Q Consensus 203 ggt~dvsvv~~~----~~-~~~vl~---~~~~~~lGG~~iD~~l~~-~l~~~~~~~~---~~-------------~~~~~ 257 (726)
|||||+.|-.+. .| ...+.- ..-+-.+.|+||-..+.+ +++..+.+.. |+ +-...
T Consensus 575 GGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg~~~ 654 (1002)
T PF07520_consen 575 GGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDGQSD 654 (1002)
T ss_pred CCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcchhH
Confidence 999999998877 22 222211 112456899998876554 5555444322 11 10000
Q ss_pred -H---H----------HHHHHHHHHHHHhh-------------hcC-CCCcccE------Eecc------ccCCcceEEE
Q 004867 258 -A---R----------ASLRLRVACEKLKK-------------VLS-ANPEAPL------NIEC------LMEEKDVRGF 297 (726)
Q Consensus 258 -~---~----------~~~rL~~~ae~~K~-------------~Ls-~~~~~~i------~i~~------l~~~~d~~~~ 297 (726)
. | ...+++.++|..=. .|. ..+...+ .+.. -++=.++.+.
T Consensus 655 ~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdildv~l~ 734 (1002)
T PF07520_consen 655 QDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILDVPLE 734 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceecceEE
Confidence 0 0 01334455554221 111 0010000 0000 0111346778
Q ss_pred eCHHHHHHHHh---HHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCC--------------
Q 004867 298 IKRDEFEQISA---PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR-------------- 360 (726)
Q Consensus 298 itr~efe~l~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~-------------- 360 (726)
|+...+...+- -.+.+....+-+++... +.|-++|+|=-||+|.||.++++....++.
T Consensus 735 i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~WY 809 (1002)
T PF07520_consen 735 IDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNWY 809 (1002)
T ss_pred EcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeecccc
Confidence 99999988764 44555555555555443 467899999999999999999998864431
Q ss_pred ------CCCCchhhhhcchHHHHHHhC
Q 004867 361 ------RTMNASECVARGCALQCAILS 381 (726)
Q Consensus 361 ------~~~n~~eaVa~GAa~~aa~ls 381 (726)
+--||-..||.||.++.....
T Consensus 810 PF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 810 PFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred cCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 223899999999987765544
No 54
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.43 E-value=2.9e-05 Score=82.95 Aligned_cols=46 Identities=26% Similarity=0.295 Sum_probs=43.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHH
Q 004867 333 HMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCA 378 (726)
Q Consensus 333 ~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa 378 (726)
+.|+++||.++.+.+.+.+++.+|.++..+.+|+.+.|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999874
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.31 E-value=9e-05 Score=77.27 Aligned_cols=180 Identities=17% Similarity=0.195 Sum_probs=100.5
Q ss_pred ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHH
Q 004867 167 PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKF 246 (726)
Q Consensus 167 ~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~ 246 (726)
.-..++|-+|-+.+..... | ..=.|+|+||- |.=++.+.+|.+.-..-..-+.-|.-.|=+.+++.
T Consensus 209 aD~~~~Ei~ah~kgA~~f~---p----~~dtIiDIGGQ--D~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~----- 274 (396)
T COG1924 209 ADKVVVEISAHAKGARYFA---P----DVDTVIDIGGQ--DSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARR----- 274 (396)
T ss_pred CCcceeeeehhHHHHHHhC---C----CCcEEEEecCc--ceeEEEEeCCeeeeeEeccccccccchHHHHHHHH-----
Confidence 3455677777655443221 1 12289999996 66666677776544433322333333443333332
Q ss_pred HhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEecc-ccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHH-HHHH
Q 004867 247 KEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIEC-LMEEKDVRGFIKRDEFEQISAPILERVKRPLEK-ALAE 324 (726)
Q Consensus 247 ~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~-l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~-~l~~ 324 (726)
.++++.+ |-+.+.+.+..-.-+....+..++ +..- ..--. ..|+++..+...+..-+-. +++.
T Consensus 275 ---Lgv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSevi~~--~~~G~---~~EdI~AGl~~Sv~~~v~~~~~~~ 339 (396)
T COG1924 275 ---LGVDVEE-------LGKLALKATPPVKINSRCAVFAESEVISA--LAEGA---SPEDILAGLAYSVAENVAEKVIKR 339 (396)
T ss_pred ---hCCCHHH-------HHHHHhcCCCCcccCCeeEEEehHHHHHH--HHcCC---CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2343321 223333333322222222232221 0000 00001 2345555555555444333 5554
Q ss_pred cCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHH
Q 004867 325 TGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 325 ~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
..+. + -|+|+||.+....+.+++++.+|.++..+.+|...-|+|||+++..
T Consensus 340 ~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 340 VDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred cCCC--C--CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 4333 2 2999999999999999999999999999999999999999999864
No 56
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.12 E-value=0.00037 Score=70.82 Aligned_cols=177 Identities=17% Similarity=0.092 Sum_probs=90.1
Q ss_pred eechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEee-CCeEEEEEEecCCCccchHHHHHHHHHHHHHHHh
Q 004867 170 LFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFK-KGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKE 248 (726)
Q Consensus 170 li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~-~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~ 248 (726)
.+.|.+|-|...... . |..=.|+|+||--+- ++.+. +|.+.-..-..-+.-|.-.|=+.+++.
T Consensus 80 ~vtEIt~ha~GA~~~---~----p~~~tIiDIGGQD~K--~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~------- 143 (262)
T TIGR02261 80 HFYSMTTHARGAIYL---N----PEARAVLDIGALHGR--AIRMDERGKVEAYKMTSQCASGSGQFLENIARY------- 143 (262)
T ss_pred CeeEEeHHHHHHHHH---C----CCCCEEEEeCCCceE--EEEEcCCCcEeeEEecCcccccccHHHHHHHHH-------
Confidence 356888777654332 1 233379999997544 56663 444332222212233434443333433
Q ss_pred hhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Q 004867 249 EYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLS 328 (726)
Q Consensus 249 ~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~ 328 (726)
.++++.+ |-..+.+++....-+....+..++-.-. -..--.+|++ ++..+...+.+-+...++..+..
T Consensus 144 -L~i~lee-------l~~~a~~~~~~~~iss~CtVFaeSevi~-~~~~G~~~ed---I~aGl~~sia~r~~~~~~~~~~~ 211 (262)
T TIGR02261 144 -LGIAQDE-------IGSLSQQADNPEKVSGICAVLAETDVIN-MVSRGISAPN---ILKGIHESMADRLAKLLKSLGAL 211 (262)
T ss_pred -hCCCHHH-------HHHHHhcCCCCCCcCCCceEEchhhHHH-HHHCCCCHHH---HHHHHHHHHHHHHHHHHhccCCC
Confidence 2333211 2122333333333333334433320000 0011233443 33333333333333334433211
Q ss_pred CCCccEEEEEcCCCChHHHHHHHHHHcC-CC----CCCCCCchhhhhcchHHHH
Q 004867 329 VEDVHMVEVVGSSSRVPAIIKILTEFFG-KE----PRRTMNASECVARGCALQC 377 (726)
Q Consensus 329 ~~~i~~ViLvGG~srip~v~~~l~~~fg-~~----v~~~~n~~eaVa~GAa~~a 377 (726)
-..|+|+||.++.+.+.+.|++.++ .+ +..+.+|+.+-|+|||++|
T Consensus 212 ---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 ---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred ---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 1359999999999999999999984 23 4556789999999999874
No 57
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.88 E-value=0.00033 Score=76.01 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=56.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCceeee---chhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCC
Q 004867 140 CCIGIPVYFTDLQRRAVIDAATIAGLHPLRLF---HETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKG 216 (726)
Q Consensus 140 ~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li---~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~ 216 (726)
+.||=-+--..+.|..+..-+..||==++.-- -|+.=|+-..|-. .++......|+=+|+||||+.+++++-.
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~--~~S~~~~~~V~NiDIGGGTtN~avf~~G-- 163 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAA--ALSKEHHTVVANIDIGGGTTNIAVFDNG-- 163 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHH--HHhhhhCCeEEEEEeCCCceeEEEEECC--
Confidence 56676666677778888777777773222111 2333333222211 1122246789999999999999998766
Q ss_pred eEEEEEEecCCCccchHH
Q 004867 217 QLKILGHSFDRSVGGRDF 234 (726)
Q Consensus 217 ~~~vl~~~~~~~lGG~~i 234 (726)
+++++. ..++||+.|
T Consensus 164 --~v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 164 --EVIDTA-CLDIGGRLI 178 (473)
T ss_pred --EEEEEE-EEeeccEEE
Confidence 677776 688999965
No 58
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.76 E-value=0.00035 Score=69.74 Aligned_cols=190 Identities=18% Similarity=0.177 Sum_probs=97.6
Q ss_pred HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHH
Q 004867 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (726)
Q Consensus 161 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 240 (726)
+..|.++..-=-|+.+|.+....... .+..++++|+||||||.|++.-.+ .+.-+... -.|+.++..|..
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-----t~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlA----GAG~mVTmlI~s 175 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-----TDKPLAILDMGGGSTDASIINRDG-EVTAIHLA----GAGNMVTMLINS 175 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT-------SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-----CCCCeEEEecCCCcccHHHhCCCC-cEEEEEec----CCchhhHHHHHH
Confidence 45688877777899999887754321 356799999999999999987664 33222222 245666655543
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEe----------cc------------ccCCc--ceEE
Q 004867 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNI----------EC------------LMEEK--DVRG 296 (726)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i----------~~------------l~~~~--d~~~ 296 (726)
. .+++. +.-||.+|+-=-..-+..+.+ +. +-++. ++..
T Consensus 176 E--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 E--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp H--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred h--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 2 22211 144566665311110000000 00 00110 1111
Q ss_pred EeCHHHHHHHHhHHHHH-HHHHHHHHHHHc--CCCCCCccEEEEEcCCCChHHHHHHHHHHcC--------CCCCCCCCc
Q 004867 297 FIKRDEFEQISAPILER-VKRPLEKALAET--GLSVEDVHMVEVVGSSSRVPAIIKILTEFFG--------KEPRRTMNA 365 (726)
Q Consensus 297 ~itr~efe~l~~~~~~~-i~~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~~fg--------~~v~~~~n~ 365 (726)
.++-+++..+-+..-++ +....-++|+.. .-...+|+.|+|||||+.=.=|-+++.+.+. -++.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 22333333322222222 122233444442 2234679999999999987667777777662 245566679
Q ss_pred hhhhhcchHHHHH
Q 004867 366 SECVARGCALQCA 378 (726)
Q Consensus 366 ~eaVa~GAa~~aa 378 (726)
-.|||.|.++..+
T Consensus 318 RNAVATGLvlsy~ 330 (332)
T PF08841_consen 318 RNAVATGLVLSYA 330 (332)
T ss_dssp STHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhc
Confidence 9999999987543
No 59
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.74 E-value=0.0035 Score=69.25 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=52.1
Q ss_pred eEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCC--------------
Q 004867 294 VRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEP-------------- 359 (726)
Q Consensus 294 ~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v-------------- 359 (726)
+.+.|.-.++.+.+-..--.|...++...+.. ..-+-|-++|+|--||+|.||..++.....++
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaI--n~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~W 820 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAI--NHYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTW 820 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHH--hhhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccce
Confidence 44556666665543322001333333333322 22356789999999999999999998765332
Q ss_pred ------CCCCCchhhhhcchHHHHHHh
Q 004867 360 ------RRTMNASECVARGCALQCAIL 380 (726)
Q Consensus 360 ------~~~~n~~eaVa~GAa~~aa~l 380 (726)
.+--||-..+|.||-+.+..+
T Consensus 821 YPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 821 YPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred ecccccCcCCCcchHHHHHHHHHHHHh
Confidence 122378899999997776554
No 60
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.43 E-value=0.0027 Score=67.45 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=95.9
Q ss_pred eeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEee-CCeEEEEEEecCCCccchHHHHHHHHHHHHHHH
Q 004867 169 RLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFK-KGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFK 247 (726)
Q Consensus 169 ~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~-~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~ 247 (726)
.+++|.+|-|....... +..-.|+|+||--+- ++.+. +|.+.-..-...+.-|.-.|=+.+++.
T Consensus 249 ~vitEItcHA~GA~~l~-------P~vrTIIDIGGQDsK--~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~------ 313 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY-------PGTRTVLDIGGQDTK--GIQIDDHGIVENFQMNDRCAAGCGRYLGYIADE------ 313 (432)
T ss_pred ceeeeHHHHHHHHHHHC-------CCCCEEEEeCCCceE--EEEEcCCCcEeeeeecCcccccchHHHHHHHHH------
Confidence 35688888776553321 234479999997554 56665 354432222222334444444444433
Q ss_pred hhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Q 004867 248 EEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGL 327 (726)
Q Consensus 248 ~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~ 327 (726)
.++++.+ |-..+.+.+....-+....+..++-.-. -+.--+++++ ++..+...+..-+...+.+.+
T Consensus 314 --Lgi~leE-------l~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~reD---IaAGL~~SIA~Rv~s~l~r~~- 379 (432)
T TIGR02259 314 --MNMGLHE-------LGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKRED---ILAGLHRAIILRAISIISRSG- 379 (432)
T ss_pred --cCCCHHH-------HHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCHHH---HHHHHHHHHHHHHHHHHhccc-
Confidence 2333211 2223334444333333444443320000 0011233433 333344444333333333321
Q ss_pred CCCCccEEEEEcCCCChHHHHHHHHHHcC-----CCCCCCCCchhhhhcchHHHH
Q 004867 328 SVEDVHMVEVVGSSSRVPAIIKILTEFFG-----KEPRRTMNASECVARGCALQC 377 (726)
Q Consensus 328 ~~~~i~~ViLvGG~srip~v~~~l~~~fg-----~~v~~~~n~~eaVa~GAa~~a 377 (726)
.--..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+-|+|||++|
T Consensus 380 --~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 --GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred --CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 112469999999999999999999994 557788999999999999875
No 61
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.40 E-value=0.0013 Score=70.00 Aligned_cols=192 Identities=14% Similarity=0.152 Sum_probs=102.2
Q ss_pred CcEEEEecCCCCHHHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEE-EEEEeeCC
Q 004867 138 VDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQV-CIAGFKKG 216 (726)
Q Consensus 138 ~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dv-svv~~~~~ 216 (726)
..+++|-|+.+...-|+.+.+..-.. |++..+.-.. .|.+ |+.. -.+-+|+|+|.|.|.+ -|++-.
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~-qavl-ya~g--------~ttG~VvD~G~gvt~~vPI~eG~-- 166 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAI-QAVL-YASG--------RTTGLVVDSGDGVTHVVPIYEGY-- 166 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHH-HHHH-HHcC--------CeeEEEEEcCCCceeeeeccccc--
Confidence 57999999999999999888764332 2333333222 3323 5432 2456999999997754 444322
Q ss_pred eEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC------------cccEE
Q 004867 217 QLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP------------EAPLN 284 (726)
Q Consensus 217 ~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~------------~~~i~ 284 (726)
.+...-....+||++++.-|...|.+. +....... -+.-++.+|+.++... ...+.
T Consensus 167 --~lp~ai~~ldl~G~dlt~~l~~~L~~~-----g~s~~~~~-----~~eIv~diKeklCyvald~~~e~~~~~~~~~l~ 234 (372)
T KOG0676|consen 167 --ALPHAILRLDLAGRDLTDYLLKQLRKR-----GYSFTTSA-----EFEIVRDIKEKLCYVALDFEEEEETANTSSSLE 234 (372)
T ss_pred --ccchhhheecccchhhHHHHHHHHHhc-----cccccccc-----HHHHHHHhHhhhcccccccchhhhccccccccc
Confidence 233334467799999999777766651 21111110 0122344444443211 11111
Q ss_pred ec-cccCCcceEEEeCHHHHH---HHHhHHH-----HHHHHHHHHHHHHc--CCCCCCccEEEEEcCCCChHHHHHHHHH
Q 004867 285 IE-CLMEEKDVRGFIKRDEFE---QISAPIL-----ERVKRPLEKALAET--GLSVEDVHMVEVVGSSSRVPAIIKILTE 353 (726)
Q Consensus 285 i~-~l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~ 353 (726)
.. .+.++. . +.+.-+.|. -+++|-+ ..|.+.+-..+-++ .+.+.-...|+|+||++-+|.+.+++.+
T Consensus 235 ~~y~lPDg~-~-i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~k 312 (372)
T KOG0676|consen 235 SSYELPDGQ-K-ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQK 312 (372)
T ss_pred ccccCCCCC-E-EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHH
Confidence 11 022222 2 344433322 2222221 22333333333333 2333335689999999999999999887
Q ss_pred HcC
Q 004867 354 FFG 356 (726)
Q Consensus 354 ~fg 356 (726)
...
T Consensus 313 El~ 315 (372)
T KOG0676|consen 313 ELQ 315 (372)
T ss_pred HHh
Confidence 663
No 62
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.05 E-value=0.0053 Score=66.15 Aligned_cols=122 Identities=13% Similarity=0.161 Sum_probs=86.7
Q ss_pred eEEcHHHHHHHHHHHHHHHHHHhcCCCcC-----cEEEEecCCCCHHHHHHHH-HHHHHhCCCceeeechhHHHHHHhhh
Q 004867 110 RVFTPTQVLGMLLSNLKAIAESNLNAAVV-----DCCIGIPVYFTDLQRRAVI-DAATIAGLHPLRLFHETTATALAYGI 183 (726)
Q Consensus 110 ~~~~~eel~a~~L~~l~~~a~~~~~~~~~-----~~VitVPa~f~~~qR~~l~-~Aa~~AGl~~~~li~Ep~AaAl~y~~ 183 (726)
...+..++++.+-+-+.-.....+..+.. .+|+.||-.|.....+.+. -.....||....++-|+.|+.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 45667777666555444444455554433 5899999999987655544 44667899999999999999877765
Q ss_pred hcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHH
Q 004867 184 YKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAA 244 (726)
Q Consensus 184 ~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 244 (726)
. .-.|||+|+-+|.++.|+-. +.+..+.-....||.||++.++-++.+
T Consensus 275 s----------s~CVVdiGAQkTsIaCVEdG---vs~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S----------SACVVDIGAQKTSIACVEDG---VSLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c----------ceeEEEccCcceeEEEeecC---ccccCceEEeccCCchHHHHHHHHHHh
Confidence 2 45899999999998886543 223333334678999999999876654
No 63
>PRK13317 pantothenate kinase; Provisional
Probab=97.02 E-value=0.018 Score=59.75 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=42.5
Q ss_pred CccEEEEEc-CCCChHHHHHHHHHHc---CCCCCCCCCchhhhhcchHHHHH
Q 004867 331 DVHMVEVVG-SSSRVPAIIKILTEFF---GKEPRRTMNASECVARGCALQCA 378 (726)
Q Consensus 331 ~i~~ViLvG-G~srip~v~~~l~~~f---g~~v~~~~n~~eaVa~GAa~~aa 378 (726)
.+..|+++| |.++.|.+++.+.+++ +.++..+.||..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 457899999 7999999999999988 56778889999999999999875
No 64
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=96.80 E-value=0.036 Score=54.88 Aligned_cols=221 Identities=18% Similarity=0.183 Sum_probs=126.0
Q ss_pred cCcEEEEecCCCCHHHHHHHHHH-HHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 004867 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (726)
Q Consensus 137 ~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (726)
...+.+|-|+--....|+.|.+. .+.-||.-+.+.-. |+..-|+. .+ -.-+|+|-|.|-|-+.-+.-.
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQ--AVLtLYAQ---GL-----~tGvVvDSGDGVTHi~PVye~- 169 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQ--AVLTLYAQ---GL-----LTGVVVDSGDGVTHIVPVYEG- 169 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHH--HHHHHHHh---cc-----cceEEEecCCCeeEEeeeecc-
Confidence 44688999998888888877665 56778886665433 33323332 11 234899999999887654211
Q ss_pred CeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC-----------cccEE
Q 004867 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP-----------EAPLN 284 (726)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~-----------~~~i~ 284 (726)
-.+.-+ .....+.|+++++-|.+.+..+ -|...-..+ .......|+.|..-. ++++-
T Consensus 170 ~~l~HL--trRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvL 237 (389)
T KOG0677|consen 170 FVLPHL--TRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVL 237 (389)
T ss_pred eehhhh--hhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheee
Confidence 111111 2245689999999999988765 121111111 133444555553211 12222
Q ss_pred ecc--ccCCcceEEEeCHHHHH---HHHhHHH-----HHHHHHHHHHHHHcCCCC--CCccEEEEEcCCCChHHHHHHHH
Q 004867 285 IEC--LMEEKDVRGFIKRDEFE---QISAPIL-----ERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKILT 352 (726)
Q Consensus 285 i~~--l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~srip~v~~~l~ 352 (726)
+++ |.+|. .+.+--+.|+ .+++|-+ ..+.+++-.+++.+.++. .--.+|+|.||++--|.+-++|+
T Consensus 238 v~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLE 315 (389)
T KOG0677|consen 238 VESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLE 315 (389)
T ss_pred eeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHH
Confidence 221 22333 2345555554 4556543 335566667777664432 12369999999999999988877
Q ss_pred HHcC-------------------CCCCCCCCchhhhhcchHHHHHHhCC
Q 004867 353 EFFG-------------------KEPRRTMNASECVARGCALQCAILSP 382 (726)
Q Consensus 353 ~~fg-------------------~~v~~~~n~~eaVa~GAa~~aa~ls~ 382 (726)
+.+. .++-.+..--.-|-.|.|..|.++..
T Consensus 316 kElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 316 KELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 6431 11222333345677888888776643
No 65
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.69 E-value=0.0016 Score=64.33 Aligned_cols=75 Identities=24% Similarity=0.368 Sum_probs=54.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCC-CCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHH
Q 004867 304 EQISAPILERVKRPLEKALAETGL-SVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 304 e~l~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
.++++-+++.+.-.++..++...- ....++.|+++||.++.|.+.+++.+.||.++....+ .++.|.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 344445555555444444444311 1234899999999999999999999999988866644 89999999999874
No 66
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.42 E-value=0.51 Score=49.01 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=48.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHc-----CCCCCCCCCchhhhhcchHHHH
Q 004867 305 QISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF-----GKEPRRTMNASECVARGCALQC 377 (726)
Q Consensus 305 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f-----g~~v~~~~n~~eaVa~GAa~~a 377 (726)
++++...+.+...+..++.+....... |+|+||..+.+.+.+.+.+.+ ..++.....|....+.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 344455555666666666665433222 999999999977777774444 3445667789999999999876
No 67
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.21 E-value=0.23 Score=54.95 Aligned_cols=215 Identities=13% Similarity=0.140 Sum_probs=118.6
Q ss_pred HHHHHHHHHhCCCceeee----chhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC-------CeEEEEE
Q 004867 154 RAVIDAATIAGLHPLRLF----HETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK-------GQLKILG 222 (726)
Q Consensus 154 ~~l~~Aa~~AGl~~~~li----~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~-------~~~~vl~ 222 (726)
....++|...||..-..| -+.-|.+++.+- ...+-|++=+|-+|+.+.+-+-.. .....+-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~--------~~~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~ 303 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGG--------AQPGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVL 303 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceecccccccccc--------CCCCeEEEEeccceEEEEecCCceecCccccccccccC
Confidence 445688888998632222 122232322221 112345555788888877654331 1222222
Q ss_pred EecCCCccchHHHHHHHHHHHHHHH---------hhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCC--
Q 004867 223 HSFDRSVGGRDFDEVLFQHFAAKFK---------EEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE-- 291 (726)
Q Consensus 223 ~~~~~~lGG~~iD~~l~~~l~~~~~---------~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~-- 291 (726)
-+.-..=||..-.=.|.+||.+... .+++..+. .....++..-+++.+...+.... .+.++.+..+
T Consensus 304 Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRs 380 (544)
T COG1069 304 PGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRS 380 (544)
T ss_pred cchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEecccccCCcC
Confidence 3333446777777788888876621 11111111 11334444445555555533221 1222221111
Q ss_pred ----cc-------eEEEeCHHHHHHHHhHHHHHHH---HHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCC
Q 004867 292 ----KD-------VRGFIKRDEFEQISAPILERVK---RPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK 357 (726)
Q Consensus 292 ----~d-------~~~~itr~efe~l~~~~~~~i~---~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~ 357 (726)
.+ +++.=+.+.+-.+....+.-+. +.|-+++++.|+ .|+.|+.+||..+.|.+.+.+....|+
T Consensus 381 P~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~ 457 (544)
T COG1069 381 PLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGR 457 (544)
T ss_pred CCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCC
Confidence 11 1222234434444444444443 344455566665 489999999999999999999999998
Q ss_pred CCCCCCCchhhhhcchHHHHHHhCCC
Q 004867 358 EPRRTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 358 ~v~~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
++..+ ..++++++|+|+.|+.-.+.
T Consensus 458 ~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 458 PVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred eEEee-cccchhhhHHHHHHHHHhcc
Confidence 87666 67899999999999865543
No 68
>PLN02669 xylulokinase
Probab=95.98 E-value=0.017 Score=66.47 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=55.3
Q ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHH
Q 004867 299 KRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCA 378 (726)
Q Consensus 299 tr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa 378 (726)
+|.+ +++.+++.+.-.++..++..+.. ..++.|+++||+|+.+.+.+.+.+.||.++.....+ ++.|+|||+.|+
T Consensus 417 ~~~~---~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~ 491 (556)
T PLN02669 417 DPPS---EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAA 491 (556)
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHH
Confidence 4544 34445555544444444444332 357899999999999999999999999988665544 788999999997
Q ss_pred H
Q 004867 379 I 379 (726)
Q Consensus 379 ~ 379 (726)
.
T Consensus 492 ~ 492 (556)
T PLN02669 492 H 492 (556)
T ss_pred H
Confidence 5
No 69
>PRK15027 xylulokinase; Provisional
Probab=95.97 E-value=0.015 Score=65.96 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=57.9
Q ss_pred eCHHHHHHHHh-HHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHH
Q 004867 298 IKRDEFEQISA-PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (726)
Q Consensus 298 itr~efe~l~~-~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~ 376 (726)
-+|.+|-+.+- .+.-.+...+ +.++..+. .++.|+++||+++++...+++.+.||.++....+.+++.++|||+.
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 35666554332 2222333333 33444443 4788999999999999999999999999866667777889999999
Q ss_pred HHHhCCC
Q 004867 377 CAILSPT 383 (726)
Q Consensus 377 aa~ls~~ 383 (726)
|+.-.+.
T Consensus 432 A~~~~G~ 438 (484)
T PRK15027 432 AQIAANP 438 (484)
T ss_pred HHHhcCC
Confidence 9865543
No 70
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.96 E-value=0.016 Score=66.62 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=64.0
Q ss_pred EeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHH
Q 004867 297 FIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (726)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~ 376 (726)
.-+|..+..++..+++.+.-.++.+++...-....++.|.++||+++++...+++.+.+|.++....+ .|+.++|||+.
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHH
Confidence 33577777777777777776666555543211234788999999999999999999999998866654 56889999999
Q ss_pred HHHhCC
Q 004867 377 CAILSP 382 (726)
Q Consensus 377 aa~ls~ 382 (726)
|+.-.+
T Consensus 488 A~~~~G 493 (541)
T TIGR01315 488 GAKAAG 493 (541)
T ss_pred HHHhcC
Confidence 986544
No 71
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=95.89 E-value=0.37 Score=49.56 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=56.6
Q ss_pred cCcEEEEecCCCCHH-HHHHHHHHHHHhCCCceeeechhHHHHHHhh---hhcCCCCCCCCceEEEEEeCCceeEEEEEE
Q 004867 137 VVDCCIGIPVYFTDL-QRRAVIDAATIAGLHPLRLFHETTATALAYG---IYKTDLPENDQLNVAFVDIGHASLQVCIAG 212 (726)
Q Consensus 137 ~~~~VitVPa~f~~~-qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~---~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 212 (726)
-..+++|=|.+--+. |.....-..+.-++.. +..-+.|+.+++- ....+.......+.+|+|-|.+-|-+.-+
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~- 169 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPV- 169 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehh-
Confidence 457899998775554 4444444455556653 3333333333332 11111111135689999999997765432
Q ss_pred eeCCeEEEEEEecCCCccchHHHHHHHHHHH
Q 004867 213 FKKGQLKILGHSFDRSVGGRDFDEVLFQHFA 243 (726)
Q Consensus 213 ~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~ 243 (726)
-.|....-+.. -..+||..++..|.+++.
T Consensus 170 -v~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 -VKGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred -hcCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 22211111222 467999999999988764
No 72
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.69 E-value=0.018 Score=51.92 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=27.7
Q ss_pred EEEEEeCCceeEEEEEEee-CCeEEEEEEecCCCcc--chHHH--HHHHHHHH
Q 004867 196 VAFVDIGHASLQVCIAGFK-KGQLKILGHSFDRSVG--GRDFD--EVLFQHFA 243 (726)
Q Consensus 196 vlv~D~Gggt~dvsvv~~~-~~~~~vl~~~~~~~lG--G~~iD--~~l~~~l~ 243 (726)
|+++|+|++++.+.+++.. .+.++++..+.....| |.+|. +.+.+-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999884 3455555444222211 66666 55554443
No 73
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=95.65 E-value=0.065 Score=55.05 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=50.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCceee---echhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCC
Q 004867 140 CCIGIPVYFTDLQRRAVIDAATIAGLHPLRL---FHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKG 216 (726)
Q Consensus 140 ~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~l---i~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~ 216 (726)
+.||=-.--..+.|.++...-..||==++.- --|+.-|.-..|- ..++......|+-+|+||||+..|++...
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA--~t~Seqr~t~v~NlDIGGGTtN~slFD~G-- 165 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGA--QTLSEQRLTRVLNLDIGGGTTNYSLFDAG-- 165 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccc--cchhhhhceEEEEEeccCCccceeeeccc--
Confidence 5566666566666776665555565322211 1122222211111 11222235678999999999999997655
Q ss_pred eEEEEEEecCCCccchHH
Q 004867 217 QLKILGHSFDRSVGGRDF 234 (726)
Q Consensus 217 ~~~vl~~~~~~~lGG~~i 234 (726)
++..+. ...+||+-+
T Consensus 166 --kv~dTa-CLdiGGRLi 180 (473)
T COG4819 166 --KVSDTA-CLDIGGRLI 180 (473)
T ss_pred --ccccce-eeecCcEEE
Confidence 456665 567888854
No 74
>PRK10854 exopolyphosphatase; Provisional
Probab=95.38 E-value=0.38 Score=54.87 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCceeeechhHHHHHHh-hhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCcc
Q 004867 152 QRRAVIDAATIAGLHPLRLFHETTATALAY-GIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVG 230 (726)
Q Consensus 152 qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y-~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lG 230 (726)
....+.++-...|+++ .+|+...=|.+.| |+.. .++ .....+|+|+|||+|.+++++-. .+.... ...+|
T Consensus 98 ~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~-~l~--~~~~~lvvDIGGGStEl~~~~~~--~~~~~~---S~~lG 168 (513)
T PRK10854 98 ATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEH-TQP--EKGRKLVIDIGGGSTELVIGENF--EPILVE---SRRMG 168 (513)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhc-ccC--CCCCeEEEEeCCCeEEEEEecCC--CeeEeE---EEecc
Confidence 3444555666679885 6666555555544 4443 233 23568999999999999997533 222221 23677
Q ss_pred chHHHHHH
Q 004867 231 GRDFDEVL 238 (726)
Q Consensus 231 G~~iD~~l 238 (726)
.-.+.+.+
T Consensus 169 ~vrl~e~f 176 (513)
T PRK10854 169 CVSFAQLY 176 (513)
T ss_pred eeeHHhhh
Confidence 76665543
No 75
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.29 E-value=0.034 Score=63.32 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=43.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSP 382 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~ 382 (726)
.++.|.++||+++.+...+++.+.||.++.... ..|+.++|||+.|+.-.+
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcC
Confidence 478899999999999999999999999886544 557889999999886544
No 76
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.24 E-value=0.19 Score=55.88 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCC
Q 004867 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
.+.-++..+|+.+-++.+ ..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+++- |+.|||+.|+..+..
T Consensus 395 ai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 395 AIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 333444444444444433 46888999999999999999999999999999988877 999999999988765
No 77
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.21 E-value=0.049 Score=61.74 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=44.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
.++.|.++||.++.+.+.+++.+.||.++.... ..++.++|||+.|+.-.+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCC
Confidence 478999999999999999999999999886554 6678899999999876543
No 78
>PRK04123 ribulokinase; Provisional
Probab=95.14 E-value=0.039 Score=63.60 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=54.5
Q ss_pred CHHHHHHHHhHHHHHHHHHHHHHH---HHcCCCCCCccEEEEEcCC-CChHHHHHHHHHHcCCCCCCCCCchhhhhcchH
Q 004867 299 KRDEFEQISAPILERVKRPLEKAL---AETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFFGKEPRRTMNASECVARGCA 374 (726)
Q Consensus 299 tr~efe~l~~~~~~~i~~~i~~~l---~~~~~~~~~i~~ViLvGG~-srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa 374 (726)
+|.+ +++.+++.+.-.++.++ ++.+. .++.|.++||+ ++.+.+.+++.+.||.++...- ..|+.++|||
T Consensus 409 ~~~~---l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA 481 (548)
T PRK04123 409 DAPD---IYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAA 481 (548)
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHH
Confidence 4554 34444444443333333 33333 47889999999 9999999999999999885554 5678899999
Q ss_pred HHHHHhCC
Q 004867 375 LQCAILSP 382 (726)
Q Consensus 375 ~~aa~ls~ 382 (726)
+.|+.-.+
T Consensus 482 ~lA~~~~G 489 (548)
T PRK04123 482 IFAAVAAG 489 (548)
T ss_pred HHHHHHhc
Confidence 99986443
No 79
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.13 E-value=0.039 Score=62.26 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=54.9
Q ss_pred CHHHHHHHHhHHHHHHHHHHHHH---HHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHH
Q 004867 299 KRDEFEQISAPILERVKRPLEKA---LAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (726)
Q Consensus 299 tr~efe~l~~~~~~~i~~~i~~~---l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~ 375 (726)
+|.+ +++.+++.+.-.++.. +++.+ ...++.|.++||+++.|...+++.+.||.++...-+ .++.++|||+
T Consensus 363 ~~~~---l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~ 436 (465)
T TIGR02628 363 TRGH---IYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAM 436 (465)
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHH
Confidence 4554 4444444444433333 33332 124788999999999999999999999998865554 4788999999
Q ss_pred HHHHhCC
Q 004867 376 QCAILSP 382 (726)
Q Consensus 376 ~aa~ls~ 382 (726)
.|+.-.+
T Consensus 437 ~a~~a~G 443 (465)
T TIGR02628 437 FGFYGVG 443 (465)
T ss_pred HHHHhcC
Confidence 9986544
No 80
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.06 E-value=0.05 Score=62.55 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=44.7
Q ss_pred CccEEEEEcCC-CChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCC
Q 004867 331 DVHMVEVVGSS-SRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 331 ~i~~ViLvGG~-srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
.++.|+++||+ ++.+.+.+++.+.||.++....+ .|+.++|||+.|+.-.+.
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQAPALGAAIFAAVAAGV 487 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-CcchhHHHHHHHHHHcCC
Confidence 57899999999 99999999999999998866655 468899999999865543
No 81
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.04 E-value=0.044 Score=62.34 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=43.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSP 382 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~ 382 (726)
.++.|.++||+++.+...+++.+.||.++... +..|+.|+|||+.|+.-.+
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~-~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVRP-KVTETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEec-CCCcchHHHHHHHHHhhcC
Confidence 47899999999999999999999999988654 4567889999999876544
No 82
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.97 E-value=0.036 Score=58.19 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCC-CCCCCCchhhhhcchHH
Q 004867 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE-PRRTMNASECVARGCAL 375 (726)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~-v~~~~n~~eaVa~GAa~ 375 (726)
+++-..+++.+.|+.+....+..+.+.. ++.+||.+ |++-..|.+.+|.+ +..+..+.-+-|.||++
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~~-lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDFP-LVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccccc-cccccccc--cccccccccccccccccccccccccccccccc
Confidence 3334445555556655444565543332 44556665 77888888888854 55566678889999985
No 83
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.5 Score=52.98 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEe
Q 004867 152 QRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGF 213 (726)
Q Consensus 152 qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 213 (726)
.-..+..+-+..|+++-.+=-|-+|--.++|+... ++. ....+|+|+|||+|.+++..-
T Consensus 90 ~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~-~~~--~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 90 GDEFLARVEKELGLPIEVISGEEEARLIYLGVAST-LPR--KGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred HHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhc-CCC--CCCEEEEEecCCeEEEEEecC
Confidence 34567788888899854444455665555555443 332 577899999999999999863
No 84
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.86 E-value=0.064 Score=61.18 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=43.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSP 382 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~ 382 (726)
.++.|.++||.++.+.+.+++.+.||.++.... ..|+.++|||+.|+.-.+
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcC
Confidence 378899999999999999999999999886554 556889999999986544
No 85
>PRK10331 L-fuculokinase; Provisional
Probab=94.79 E-value=0.066 Score=60.52 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=56.0
Q ss_pred eCHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHH
Q 004867 298 IKRDEFEQISAPILERVKRPLEKALAETG-LSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (726)
Q Consensus 298 itr~efe~l~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~ 376 (726)
-+|.++ ++.+++.+.-.++..++... .....++.|.++||+++.+...+++.+.||.++.... ..|++++|||+.
T Consensus 358 ~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~l 433 (470)
T PRK10331 358 TTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMF 433 (470)
T ss_pred cCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHH
Confidence 355554 34444444433333333321 1122578999999999999999999999999886554 457889999999
Q ss_pred HHHhCCC
Q 004867 377 CAILSPT 383 (726)
Q Consensus 377 aa~ls~~ 383 (726)
|+.-.+.
T Consensus 434 a~~~~G~ 440 (470)
T PRK10331 434 GWYGVGE 440 (470)
T ss_pred HHHhcCC
Confidence 9865443
No 86
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=94.74 E-value=0.24 Score=51.20 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=39.2
Q ss_pred CCccEEEEEcC-CCChHHHHHHHHHHcC---CCCCCCCCchhhhhcchHH
Q 004867 330 EDVHMVEVVGS-SSRVPAIIKILTEFFG---KEPRRTMNASECVARGCAL 375 (726)
Q Consensus 330 ~~i~~ViLvGG-~srip~v~~~l~~~fg---~~v~~~~n~~eaVa~GAa~ 375 (726)
..+..|+++|| .+..|.+++.+...+. .+...+.|....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 6779999999998874 5567788999999999986
No 87
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.67 E-value=0.82 Score=52.10 Aligned_cols=80 Identities=23% Similarity=0.140 Sum_probs=49.3
Q ss_pred eCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHH
Q 004867 298 IKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (726)
Q Consensus 298 itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~a 377 (726)
-+|.+|-+.+-+-+.-.....-+.|.+. ....++.|.++||++|.+...+++.+.+|.++..+.. .|+.+.|+|..+
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~-~e~~a~g~A~~~ 446 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADALGLPVVVPEV-EEAGALGGAALA 446 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHcCCeeEecCc-ccchHHHHHHHH
Confidence 3565555443322222222222334443 1234678999999999999999999999998875544 455555555555
Q ss_pred HHh
Q 004867 378 AIL 380 (726)
Q Consensus 378 a~l 380 (726)
+.-
T Consensus 447 ~~~ 449 (502)
T COG1070 447 AAA 449 (502)
T ss_pred HHH
Confidence 443
No 88
>PLN02295 glycerol kinase
Probab=94.56 E-value=0.078 Score=60.60 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=44.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
.++.|.++||+++.|.+.+++.+.||.++... +..|+.|+|||+.|+.-.+.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCc
Confidence 57889999999999999999999999998554 45578899999998765543
No 89
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.56 E-value=0.095 Score=56.26 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=47.6
Q ss_pred HcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHH
Q 004867 324 ETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 324 ~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
..|........|+.+||+||...|-+.|.+.||.++..- +..++++.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 346666678999999999999999999999999988655 7788999999999864
No 90
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=94.55 E-value=2.6 Score=46.25 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=41.3
Q ss_pred ceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHH
Q 004867 293 DVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILT 352 (726)
Q Consensus 293 d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~ 352 (726)
.-.+.||..++.++.. --..+..-++-.|++++++..+|+.|+|.||++.-=-+++.+.
T Consensus 290 ~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 290 GDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 3457899999977533 3345667778889999999999999999999998777777664
No 91
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.49 E-value=0.081 Score=59.51 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=43.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
.++.|.++||+++.+...+++.+.+|.++... +.|+.++|||+.|+.-.+.
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALDE 437 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcCC
Confidence 47889999999999999999999999998543 3678999999999865543
No 92
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.49 E-value=0.082 Score=60.33 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=44.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
.++.|.++||+++.+...+++.+.||.++....++ |+.++|||+.|+.-.+.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 48899999999999999999999999988665544 68899999999865543
No 93
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.20 E-value=0.082 Score=60.54 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=43.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSP 382 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~ 382 (726)
.++.|.++||+++.+...+++.+.||.++....+ .++.++|||+.|+.-.+
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV-KEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc-cCchHHHHHHHHHHHhC
Confidence 4789999999999999999999999999876654 46789999999876544
No 94
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.18 E-value=0.089 Score=59.37 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=43.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCCC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
.++.|.++||+++.+...+++.+.+|.++.... .++.++|||+.|+.-.+.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 478899999999999999999999999985543 379999999998865543
No 95
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=93.18 E-value=0.29 Score=48.73 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCcCcEEEEecCCCCHH-HHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEE
Q 004867 122 LSNLKAIAESNLNAAVVDCCIGIPVYFTDL-QRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVD 200 (726)
Q Consensus 122 L~~l~~~a~~~~~~~~~~~VitVPa~f~~~-qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D 200 (726)
..++++..+..++.++ .++++-..|... .....++.|. |+ ..|.-.+... ..+..++++|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aN----------W~Ata~~~~e------~~~dsci~VD 136 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-AN----------WVATARFLAE------EIKDSCILVD 136 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hh----------hHHHHHHHHH------hcCCceEEEe
Confidence 4556677777776665 788888888764 2111222210 11 1111111111 1257799999
Q ss_pred eCCceeEEEEEE
Q 004867 201 IGHASLQVCIAG 212 (726)
Q Consensus 201 ~Gggt~dvsvv~ 212 (726)
+|+.|+|+--+.
T Consensus 137 ~GSTTtDIIPi~ 148 (330)
T COG1548 137 MGSTTTDIIPIK 148 (330)
T ss_pred cCCcccceEeec
Confidence 999999986553
No 96
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=92.77 E-value=0.46 Score=49.78 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCceeeechhHHHHHHh-hhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccch
Q 004867 154 RAVIDAATIAGLHPLRLFHETTATALAY-GIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGR 232 (726)
Q Consensus 154 ~~l~~Aa~~AGl~~~~li~Ep~AaAl~y-~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~ 232 (726)
..+...-+..|+++ .+|+...=|.+.| +... .++ .....+++|+|||+|.+++++-. . +.... +.++|.-
T Consensus 75 ~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~-~l~--~~~~~lviDIGGGStEl~~~~~~--~--~~~~~-Sl~lG~v 145 (285)
T PF02541_consen 75 EFLDRIKKETGIDI-EIISGEEEARLSFLGVLS-SLP--PDKNGLVIDIGGGSTELILFENG--K--VVFSQ-SLPLGAV 145 (285)
T ss_dssp HHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHH-HST--TTSSEEEEEEESSEEEEEEEETT--E--EEEEE-EES--HH
T ss_pred HHHHHHHHHhCCce-EEecHHHHHHHHHHHHHh-hcc--ccCCEEEEEECCCceEEEEEECC--e--eeEee-eeehHHH
Confidence 33445556679885 5565554444444 4332 232 35778999999999999986543 2 33222 5789988
Q ss_pred HHHHHH
Q 004867 233 DFDEVL 238 (726)
Q Consensus 233 ~iD~~l 238 (726)
.+.+.+
T Consensus 146 rl~e~~ 151 (285)
T PF02541_consen 146 RLTERF 151 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776655
No 97
>PRK09604 UGMP family protein; Validated
Probab=92.61 E-value=7.9 Score=41.49 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHc---CCCCCCCC---CchhhhhcchHHHH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARGCALQC 377 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eaVa~GAa~~a 377 (726)
.++.|+|.||.....++++.|.+.+ |.++..+. --|.+++.|+|=+-
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~ 306 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYE 306 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999999988 44433332 45888999987443
No 98
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=92.42 E-value=1.1 Score=49.43 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHH-HHhCCCceeeechhHHHHHHhhhhcCCCCCCCCc
Q 004867 116 QVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQL 194 (726)
Q Consensus 116 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~ 194 (726)
++.-.+|.|+.....-.-..-...+++|=+..=...+|+.|.+.. +.-|++.+.+=-+. .++|.+ +.......
T Consensus 95 el~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDs---lfS~~h---N~~~~~~~ 168 (645)
T KOG0681|consen 95 ELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDS---LFSFYH---NYGKSSNK 168 (645)
T ss_pred HHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhh---HHHHhh---ccCcccCc
Confidence 455555665554321110011345788888777778888887764 45588755442211 111211 11212344
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHH
Q 004867 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (726)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~ 245 (726)
..||+++|..+|-|-.| -+|.. ++....-.++||.....-|.+.+..+
T Consensus 169 ~~liis~g~~~T~vipv--ldG~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 169 SGLIISMGHSATHVIPV--LDGRL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred ceEEEecCCCcceeEEE--ecCch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 78999999999987654 33332 23334468899998877666665544
No 99
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=91.80 E-value=0.96 Score=44.12 Aligned_cols=29 Identities=21% Similarity=0.091 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCceeeechhHHHHH
Q 004867 151 LQRRAVIDAATIAGLHPLRLFHETTATAL 179 (726)
Q Consensus 151 ~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl 179 (726)
...+.+.++++.||+++..++.+|.|++.
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 45678889999999999999999999874
No 100
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=91.51 E-value=20 Score=37.49 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=31.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCC-------CCCCCCCchhhhhcchHHHHH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGK-------EPRRTMNASECVARGCALQCA 378 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~-------~v~~~~n~~eaVa~GAa~~aa 378 (726)
+++.|+|-||.+..+.+.+.+++.+.. ++......+.+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 468888888877766666666665531 122233456788999998753
No 101
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=29 Score=39.01 Aligned_cols=182 Identities=16% Similarity=0.055 Sum_probs=95.2
Q ss_pred CceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCC-ccchHHHHHHHHHHHHHH-Hhhhc---cCccCCHHHHHHHHHH
Q 004867 193 QLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRS-VGGRDFDEVLFQHFAAKF-KEEYK---IDVSQNARASLRLRVA 267 (726)
Q Consensus 193 ~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~-lGG~~iD~~l~~~l~~~~-~~~~~---~~~~~~~~~~~rL~~~ 267 (726)
..-|+++|-.|--...++....++.+..+....+.. +|.-. . .+..++--+- ...++ +-.-..+.....++..
T Consensus 137 ~a~vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY-~-~~T~~lGf~~n~~EgKvMgLAaYG~p~y~~~~~d~ 214 (555)
T COG2192 137 EALVLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLGLFY-A-AFTELLGFKPNSDEGKVMGLAAYGDPNYDLSLLDL 214 (555)
T ss_pred cceEEEEeccCCceEEEEEeccCCeeEEEEeecCcchHHHHH-H-HHHHHhCCCCCCCCccEEEeeccCCcccchHHHHH
Confidence 578999998887666677667778888777765544 44222 1 3333322110 00111 1111223222233333
Q ss_pred HHHHhhhcCC--CC-----cccEEeccccCC-----cceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEE
Q 004867 268 CEKLKKVLSA--NP-----EAPLNIECLMEE-----KDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMV 335 (726)
Q Consensus 268 ae~~K~~Ls~--~~-----~~~i~i~~l~~~-----~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V 335 (726)
... |..-.. +. ...+..-++... ..........+|...++..++++.--+-..+.+.. ..+.+
T Consensus 215 l~~-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L 289 (555)
T COG2192 215 LRE-KEDGLFVINGELLKRLARLGTFSLLGALKRRLPESPSTERAADIAASAQAYLEELVLEMLRYLREET----GEDNL 289 (555)
T ss_pred Hhh-ccccceeccHHHHHhccccceeccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----Cccce
Confidence 332 100000 00 000000001111 01223444566667777777777665555555432 15778
Q ss_pred EEEcCCCChHHHH-HHHHHHcCCCCCCCCC-chhhhhcchHHHHHHhC
Q 004867 336 EVVGSSSRVPAII-KILTEFFGKEPRRTMN-ASECVARGCALQCAILS 381 (726)
Q Consensus 336 iLvGG~srip~v~-~~l~~~fg~~v~~~~n-~~eaVa~GAa~~aa~ls 381 (726)
.+.||....-... +++.+-+..++..... .|.-.|.|||+++....
T Consensus 290 ~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~~~ 337 (555)
T COG2192 290 ALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKREL 337 (555)
T ss_pred EEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHHHHHHh
Confidence 9999998877776 7777776666655444 46679999999987643
No 102
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=90.94 E-value=1.1 Score=50.76 Aligned_cols=78 Identities=23% Similarity=0.239 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhCCCceeeechhHHHHHHh-hhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCcc
Q 004867 152 QRRAVIDAATIAGLHPLRLFHETTATALAY-GIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVG 230 (726)
Q Consensus 152 qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y-~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lG 230 (726)
....+.++-+..|+++ .+|+...=|.+.| |+... ++ .....+|+|+|||+|.+++++ ++.+ ... .+.++|
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~--~~~~~lviDIGGGStEl~~~~--~~~~--~~~-~Sl~lG 163 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TG--GADQRLVVDIGGASTELVTGT--GAQA--TSL-FSLSMG 163 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cC--CCCCEEEEEecCCeeeEEEec--CCce--eee-eEEecc
Confidence 4455666667779985 5666554444444 55443 33 234689999999999999865 3322 222 256788
Q ss_pred chHHHHHH
Q 004867 231 GRDFDEVL 238 (726)
Q Consensus 231 G~~iD~~l 238 (726)
.-.+.+.+
T Consensus 164 ~vrl~e~f 171 (496)
T PRK11031 164 CVTWLERY 171 (496)
T ss_pred chHHHHHh
Confidence 87766544
No 103
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=90.11 E-value=1.6 Score=46.03 Aligned_cols=111 Identities=15% Similarity=0.079 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEE
Q 004867 118 LGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVA 197 (726)
Q Consensus 118 ~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vl 197 (726)
+...|+..++.+..+ +.....++-|=-.---.+....+...-...|+++ ++|+...=|.+.|.--...++. ...+
T Consensus 54 ~~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~---~~~~ 128 (300)
T TIGR03706 54 ALEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI---ADGL 128 (300)
T ss_pred HHHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC---CCcE
Confidence 334555555555433 3222222222222221233333444445679875 6777776666666322223331 2349
Q ss_pred EEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHH
Q 004867 198 FVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (726)
Q Consensus 198 v~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l 238 (726)
++|+|||+|.++++.- +.+ . .....++|...+.+.+
T Consensus 129 v~DiGGGSte~~~~~~--~~~--~-~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 129 VVDIGGGSTELILGKD--FEP--G-EGVSLPLGCVRLTEQF 164 (300)
T ss_pred EEEecCCeEEEEEecC--CCE--e-EEEEEccceEEhHHhh
Confidence 9999999999998653 222 2 2224667777666553
No 104
>PLN02666 5-oxoprolinase
Probab=89.63 E-value=3.3 Score=51.96 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=48.2
Q ss_pred eCHHHHHHHHhHHH-HHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCC-CCCCCCchhhhhcchHH
Q 004867 298 IKRDEFEQISAPIL-ERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE-PRRTMNASECVARGCAL 375 (726)
Q Consensus 298 itr~efe~l~~~~~-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~-v~~~~n~~eaVa~GAa~ 375 (726)
++-++...-+..++ ..+...|+.+....|.++.+.. ++..||+ =|..--.|.+.+|.+ +..+.+|.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~~-l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANHA-LACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCce-EEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444444333333 3445666666666677655433 3344444 577888899999966 77788888888999875
Q ss_pred H
Q 004867 376 Q 376 (726)
Q Consensus 376 ~ 376 (726)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 105
>PTZ00297 pantothenate kinase; Provisional
Probab=89.36 E-value=27 Score=44.87 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=34.6
Q ss_pred CCccEEEEEcCC-CChHHHHHHHHHHc-----C-CCCCCCCCchhhhhcchHHH
Q 004867 330 EDVHMVEVVGSS-SRVPAIIKILTEFF-----G-KEPRRTMNASECVARGCALQ 376 (726)
Q Consensus 330 ~~i~~ViLvGG~-srip~v~~~l~~~f-----g-~~v~~~~n~~eaVa~GAa~~ 376 (726)
.+++.|+++|++ ..-|...+.|...+ | .+....-+....-|+||++.
T Consensus 1390 ~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1390 QGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATL 1443 (1452)
T ss_pred cCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhc
Confidence 578999999994 56899988887665 2 33444556777888898864
No 106
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=88.76 E-value=13 Score=39.38 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=42.6
Q ss_pred CcCcEEEEecCCCCHHH------------HHHHHHHHH-HhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeC
Q 004867 136 AVVDCCIGIPVYFTDLQ------------RRAVIDAAT-IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIG 202 (726)
Q Consensus 136 ~~~~~VitVPa~f~~~q------------R~~l~~Aa~-~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~G 202 (726)
++..+.|++|...+... ...+.+..+ ..|++ +.+.|+..|+|++-....... ...+++++.+|
T Consensus 57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~---~~~~~~~v~ig 132 (318)
T TIGR00744 57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGAGK---GARDVICITLG 132 (318)
T ss_pred ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccC---CCCcEEEEEeC
Confidence 45567777776553211 112333332 34765 679999999998765432211 25678999999
Q ss_pred CceeEEEEE
Q 004867 203 HASLQVCIA 211 (726)
Q Consensus 203 ggt~dvsvv 211 (726)
.|- -.+++
T Consensus 133 tGi-G~giv 140 (318)
T TIGR00744 133 TGL-GGGII 140 (318)
T ss_pred Ccc-EEEEE
Confidence 875 55554
No 107
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=88.39 E-value=0.38 Score=52.82 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCCCC--CccEEEEEcCCCChHHHHHHHHHHc------C--CCCCCCCCchhhhhcchHHHHHH
Q 004867 314 VKRPLEKALAETGLSVE--DVHMVEVVGSSSRVPAIIKILTEFF------G--KEPRRTMNASECVARGCALQCAI 379 (726)
Q Consensus 314 i~~~i~~~l~~~~~~~~--~i~~ViLvGG~srip~v~~~l~~~f------g--~~v~~~~n~~eaVa~GAa~~aa~ 379 (726)
|.+++..+|...-.... -+..|+|+||+|.+|.+.++|...+ | ..|....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 44556666665422222 2889999999999999999998876 2 23456778999999999999886
No 108
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=88.07 E-value=8.4 Score=40.89 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCC----CCCCCCCc----hhhhhcchHHHHHHhC
Q 004867 310 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK----EPRRTMNA----SECVARGCALQCAILS 381 (726)
Q Consensus 310 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~----~v~~~~n~----~eaVa~GAa~~aa~ls 381 (726)
+++.+.+.|...+.. ..+++.|+|.|-.+++|-+.+.+++.|+. ++. .+.+ -...|.|+|+.|.-+.
T Consensus 243 ~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~gla 317 (343)
T PF07318_consen 243 MIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLA 317 (343)
T ss_pred HHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhh
Confidence 344444444443332 24678899999999999998888877742 221 2222 2347999999998776
Q ss_pred CC
Q 004867 382 PT 383 (726)
Q Consensus 382 ~~ 383 (726)
+.
T Consensus 318 GG 319 (343)
T PF07318_consen 318 GG 319 (343)
T ss_pred cc
Confidence 54
No 109
>PRK14878 UGMP family protein; Provisional
Probab=87.47 E-value=32 Score=36.72 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHc---CCCCCCCC---Cchhhhhc
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVAR 371 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eaVa~ 371 (726)
.+..|+|+||.+...++++.|.+.+ |.++..+. -.|.+++.
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 3678999999999999999999977 44433322 23555555
No 110
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=86.17 E-value=6.3 Score=42.55 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=32.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHcCCCCCC----CCCchhhhhcchHHHHHH
Q 004867 332 VHMVEVVGSSSRVPAIIKILTEFFGKEPRR----TMNASECVARGCALQCAI 379 (726)
Q Consensus 332 i~~ViLvGG~srip~v~~~l~~~fg~~v~~----~~n~~eaVa~GAa~~aa~ 379 (726)
.+.|+++||+++.|++.++|++.++.++.. .++++.-=|..-|++|..
T Consensus 287 ~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 287 PDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred CCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 468999999999999999999998633321 134443333444666643
No 111
>PRK09698 D-allose kinase; Provisional
Probab=85.31 E-value=52 Score=34.50 Aligned_cols=43 Identities=12% Similarity=-0.040 Sum_probs=28.0
Q ss_pred hCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 004867 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (726)
Q Consensus 163 AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (726)
.|++ +.+.|+..|+|++-..... . ...+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~-~---~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN-L---TQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC-C---CCceEEEEEecCc-eEEEEE
Confidence 4765 7899999998876543221 1 2457888899876 344443
No 112
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=83.39 E-value=2.7 Score=46.10 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=56.9
Q ss_pred eCHHHHHHH-HhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHHH
Q 004867 298 IKRDEFEQI-SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (726)
Q Consensus 298 itr~efe~l-~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~ 376 (726)
.++++|-+. ++.+.-+...+++.+-++++. .+..+-+=||.++..++.+...+.+|.+|.++.+ .|+.|+|||+.
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~l 446 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYL 446 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHH
Confidence 345544332 223333444445544444554 4777888899999999999999999999988765 57889999999
Q ss_pred HHHhCC
Q 004867 377 CAILSP 382 (726)
Q Consensus 377 aa~ls~ 382 (726)
|..-.+
T Consensus 447 AGla~G 452 (499)
T COG0554 447 AGLAVG 452 (499)
T ss_pred HhhhhC
Confidence 986554
No 113
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=83.25 E-value=1 Score=38.52 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=17.9
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 004867 1 MSVVGFDLGNESCIVAVARQ 20 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~ 20 (726)
|.++|||+|.|++++|+...
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred CcEEEEccCCCeEEEEEECC
Confidence 77999999999999999764
No 114
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=82.91 E-value=45 Score=35.41 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=33.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHc---CCCCCCCC---CchhhhhcchH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARGCA 374 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eaVa~GAa 374 (726)
.++.|+|.||.+...++++.|.+.+ +.++..+. --|.+++.|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 4678999999999999999999987 44333222 35788888876
No 115
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=80.98 E-value=1.7 Score=40.00 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.0
Q ss_pred CeEEEEEcCccceEEEEEECCc
Q 004867 1 MSVVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (726)
|.++|||+|+..+.+|+..+..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8899999999999999988653
No 116
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=80.97 E-value=79 Score=33.36 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=26.3
Q ss_pred hCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCc
Q 004867 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHA 204 (726)
Q Consensus 163 AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Ggg 204 (726)
.|+ .+.+-|+..|+|++-.+.... ....+++++-+|-|
T Consensus 106 ~~~-Pv~veNDan~aalaE~~~g~~---~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGL-PVFVENDANAAALAEAWFGAG---RGIDDVVYITLGTG 143 (314)
T ss_pred HCC-CEEEecHHHHHHHHHHHhCCC---CCCCCEEEEEEccc
Confidence 354 478999999999987665432 12457788887766
No 117
>PTZ00107 hexokinase; Provisional
Probab=80.92 E-value=1e+02 Score=34.64 Aligned_cols=64 Identities=16% Similarity=0.036 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC--ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 004867 145 PVYFTDLQRRAVIDAATIAGLH--PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (726)
Q Consensus 145 Pa~f~~~qR~~l~~Aa~~AGl~--~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (726)
|.--...-.+.|.+|...-|++ ++.++|+.+|+.++.+..... ..+...+-+=+|-||--+.+.
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~---~~~~~~iGlIlGTG~NacY~E 254 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPK---NTPPCQVGVIIGTGSNACYFE 254 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcC---CCCCceEEEEEeccccceeee
Confidence 5555666778888888887875 788999999998776553210 012333333356665554444
No 118
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=79.69 E-value=16 Score=37.08 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=56.0
Q ss_pred CCCcCcEEE--EecCCCCHHHHHHHHHHHHHhCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 004867 134 NAAVVDCCI--GIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (726)
Q Consensus 134 ~~~~~~~Vi--tVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (726)
+..+..++. .+|.+|+. -+++++++...|.+. .+++-..||.+....+.. . .....++++|+|-|+|-..++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~-v--~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPE-V--SSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChh-h--hccCCeEEEEeCCccEEEEEE
Confidence 455667887 89998763 356666666666665 455555555544433221 1 135789999999999988887
Q ss_pred EeeCCeEEEEEEecCCCccchHHH
Q 004867 212 GFKKGQLKILGHSFDRSVGGRDFD 235 (726)
Q Consensus 212 ~~~~~~~~vl~~~~~~~lGG~~iD 235 (726)
.++.+.=+.-.....+-...+.
T Consensus 185 --~~~rI~GvfEHHT~~l~~~kL~ 206 (254)
T PF08735_consen 185 --KDGRIYGVFEHHTGMLTPEKLE 206 (254)
T ss_pred --eCCEEEEEEecccCCCCHHHHH
Confidence 3443333333333444444333
No 119
>PLN02920 pantothenate kinase 1
Probab=78.90 E-value=33 Score=37.23 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=36.0
Q ss_pred CCccEEEEEcCCCChH-HHHHHHHHH---cC---CCCCCCCCchhhhhcchHHHHH
Q 004867 330 EDVHMVEVVGSSSRVP-AIIKILTEF---FG---KEPRRTMNASECVARGCALQCA 378 (726)
Q Consensus 330 ~~i~~ViLvGG~srip-~v~~~l~~~---fg---~~v~~~~n~~eaVa~GAa~~aa 378 (726)
..++.|+++|+..|.+ ..++.|.-. +. .+.....+.....|+||++...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 5689999999999998 777744433 32 4455667888899999987543
No 120
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.29 E-value=23 Score=37.78 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=40.0
Q ss_pred CCCCccEEEEEcCCCChHHHHHHHHHHc-CCCCC----CCCCchhhhhcchHHHHHHh
Q 004867 328 SVEDVHMVEVVGSSSRVPAIIKILTEFF-GKEPR----RTMNASECVARGCALQCAIL 380 (726)
Q Consensus 328 ~~~~i~~ViLvGG~srip~v~~~l~~~f-g~~v~----~~~n~~eaVa~GAa~~aa~l 380 (726)
-....+.++++||+.+.|.+.+.|...+ |..|. ..+++|..=|.+-|+.|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 3456789999999999999999999999 54443 24566766666777777643
No 121
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=76.37 E-value=33 Score=37.21 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=57.1
Q ss_pred EEeCHHHHHHHHhHHHHHHH-HHHHHHHHHcCCCCCCccE-EEEEcCCCChHHHHHHHHHHcC-CCCC-CCCCchhhhhc
Q 004867 296 GFIKRDEFEQISAPILERVK-RPLEKALAETGLSVEDVHM-VEVVGSSSRVPAIIKILTEFFG-KEPR-RTMNASECVAR 371 (726)
Q Consensus 296 ~~itr~efe~l~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~srip~v~~~l~~~fg-~~v~-~~~n~~eaVa~ 371 (726)
..-.+.++...+|..++++. .+++.+++..+ ++. +.|.||....-..-..|.+..+ .++. .+.-.|.-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 34577888888887777654 56677777765 445 9999999988888888888755 2343 33455888999
Q ss_pred chHHHHHHhCC
Q 004867 372 GCALQCAILSP 382 (726)
Q Consensus 372 GAa~~aa~ls~ 382 (726)
|||+++.....
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999986543
No 122
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=75.85 E-value=14 Score=38.37 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=54.4
Q ss_pred EeCHHHHHHHHhH---HHHHHHHHHHHHHHH-cCCCC--CCccEEEEEcC--CCChH-HHHHHHHHHcCCCCCCCCCchh
Q 004867 297 FIKRDEFEQISAP---ILERVKRPLEKALAE-TGLSV--EDVHMVEVVGS--SSRVP-AIIKILTEFFGKEPRRTMNASE 367 (726)
Q Consensus 297 ~itr~efe~l~~~---~~~~i~~~i~~~l~~-~~~~~--~~i~~ViLvGG--~srip-~v~~~l~~~fg~~v~~~~n~~e 367 (726)
..+++||.+.+.. ....+..++.-+..+ +.+.. .....|+|.|- ++|.| .+++.|++.|..++. .+.. +
T Consensus 222 ~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-k 299 (326)
T TIGR03281 222 ENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-E 299 (326)
T ss_pred cCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-h
Confidence 4677887776632 222333333222222 11111 23458999987 99999 999999999986553 3333 7
Q ss_pred hhhcchHHHHHHhCCC
Q 004867 368 CVARGCALQCAILSPT 383 (726)
Q Consensus 368 aVa~GAa~~aa~ls~~ 383 (726)
+.|.|+|+.|.-+...
T Consensus 300 sAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 300 SAAIGLALIAEDIFSG 315 (326)
T ss_pred hhhhhHHHHHHHHhCC
Confidence 7899999999877654
No 123
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=73.78 E-value=1.2e+02 Score=35.85 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEEC
Q 004867 3 VVGFDLGNESCIVAVARQ 20 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~ 20 (726)
++|||+|.|++++|++..
T Consensus 20 ~L~iDIGGT~ir~al~~~ 37 (638)
T PRK14101 20 RLLADVGGTNARFALETG 37 (638)
T ss_pred EEEEEcCchhheeeeecC
Confidence 799999999999998853
No 124
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=73.25 E-value=17 Score=39.54 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=16.1
Q ss_pred eEEEEEcCccceEEEEEE
Q 004867 2 SVVGFDLGNESCIVAVAR 19 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~ 19 (726)
.++.||||.||.++|.+.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 479999999999999875
No 125
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=72.93 E-value=89 Score=33.28 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=37.7
Q ss_pred eCHHHHHHHHhH----HHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcC
Q 004867 298 IKRDEFEQISAP----ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG 356 (726)
Q Consensus 298 itr~efe~l~~~----~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg 356 (726)
+..++.+++|.. .++-+.+..+++|+..+ .+.++++||-+....+|+++++...
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHH
Confidence 334455555544 44455555666666654 5679999999999999999999773
No 126
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=72.69 E-value=10 Score=40.88 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=44.4
Q ss_pred eEEcHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHHHhCCCceeeechhHHH--HHHhhhhcCC
Q 004867 110 RVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTAT--ALAYGIYKTD 187 (726)
Q Consensus 110 ~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~Aa--Al~y~~~~~~ 187 (726)
-.+.+.+-...+|+.+++..+....-++..-.++|=. | .+|..-| .+.|.+..-
T Consensus 152 LRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~-----------------G------tdEGv~aWiTiN~Llg~L- 207 (453)
T KOG1385|consen 152 LRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMD-----------------G------TDEGVYAWITINYLLGTL- 207 (453)
T ss_pred cccCChhHHHHHHHHHHHHHhccCCccccCCceeecc-----------------C------cccceeeeeehhhhhccc-
Confidence 4577888888999999887763322222211122211 1 1121111 344544332
Q ss_pred CCCCCCceEEEEEeCCceeEEEEEE
Q 004867 188 LPENDQLNVAFVDIGHASLQVCIAG 212 (726)
Q Consensus 188 ~~~~~~~~vlv~D~Gggt~dvsvv~ 212 (726)
..+...++.|+|+|||+|.++..-
T Consensus 208 -~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 208 -GAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -CCCCCCceEEEEcCCceEEEEEec
Confidence 222367899999999999999764
No 127
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.72 E-value=5.7 Score=46.52 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=28.2
Q ss_pred ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEE
Q 004867 167 PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAG 212 (726)
Q Consensus 167 ~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 212 (726)
+..+.+-|.|-.++....... . .+ +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~-~--~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGL-K--AG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhccc-c--cC-CEEEEEcCCcceeeeeee
Confidence 334667777766655433111 1 13 699999999999999987
No 128
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=70.16 E-value=9.1 Score=41.40 Aligned_cols=69 Identities=22% Similarity=0.171 Sum_probs=40.3
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCC-CC------CCCCCchhhhhcchHHHHH
Q 004867 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK-EP------RRTMNASECVARGCALQCA 378 (726)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~-~v------~~~~n~~eaVa~GAa~~aa 378 (726)
++.-+..=+...|.+.++... ..++.|+++||+.+.|++.+.|++.++. ++ ..+.+.-||++. |++|.
T Consensus 262 ~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~La~ 336 (364)
T PF03702_consen 262 ILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHHHH
Confidence 333343334444545555543 2378999999999999999999999963 33 223355566544 55555
Q ss_pred H
Q 004867 379 I 379 (726)
Q Consensus 379 ~ 379 (726)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 3
No 129
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=68.53 E-value=4.6 Score=41.11 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECC
Q 004867 3 VVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (726)
++|||+|||++++++++..
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 6999999999999998743
No 130
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=68.04 E-value=16 Score=28.26 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=26.8
Q ss_pred cEEEEecCCCCHHHHHHHHHHHHHhCCCc
Q 004867 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHP 167 (726)
Q Consensus 139 ~~VitVPa~f~~~qR~~l~~Aa~~AGl~~ 167 (726)
...++.|+.++..+|..+.+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67889999999999999999999999874
No 131
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=67.82 E-value=5.1 Score=36.95 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.4
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 004867 1 MSVVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~ 21 (726)
|.++|||+|+..+.+|+..+.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 679999999999999997653
No 132
>PRK09557 fructokinase; Reviewed
Probab=67.08 E-value=73 Score=33.43 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=28.4
Q ss_pred hCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 004867 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (726)
Q Consensus 163 AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (726)
.|++ +.+.|+..|+|++-...... ...++++++.+|.| +-.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~---~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAA---AGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhccc---CCCCcEEEEEEccc-eEEEEE
Confidence 3775 77999999999876443221 12467888888855 344443
No 133
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=66.99 E-value=21 Score=35.39 Aligned_cols=53 Identities=19% Similarity=0.376 Sum_probs=33.5
Q ss_pred CCceEEEEEeCCceeEEEEEEeeCC-eEEEEEEecCCC---ccchHHHHHHHHHHHHHH
Q 004867 192 DQLNVAFVDIGHASLQVCIAGFKKG-QLKILGHSFDRS---VGGRDFDEVLFQHFAAKF 246 (726)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~~~-~~~vl~~~~~~~---lGG~~iD~~l~~~l~~~~ 246 (726)
+...+|++|+||.++-++++++.++ .+++....+..+ .-|.. ..|.+|+.+.+
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i 117 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCI 117 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHH
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHH
Confidence 3567999999999999999999976 444433332222 11211 45666666554
No 134
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=66.29 E-value=5.8 Score=36.56 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 004867 1 MSVVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~ 21 (726)
|.++||||||-.+.+|+....
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 789999999999999997654
No 135
>PRK03011 butyrate kinase; Provisional
Probab=66.13 E-value=8.3 Score=41.71 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=36.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcC----CCCCCCCCchhhhhcchHH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFG----KEPRRTMNASECVARGCAL 375 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg----~~v~~~~n~~eaVa~GAa~ 375 (726)
++|.|+|.||.+..+.+.+.|.+.+. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 68999999999999999998888774 3345555667899999864
No 136
>PRK00976 hypothetical protein; Provisional
Probab=65.46 E-value=35 Score=36.13 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=38.5
Q ss_pred CccEEEEEcCCCChH--HHHHHHHHHcCCCCCCCCCchhhhhcchHHHHHHhCC
Q 004867 331 DVHMVEVVGSSSRVP--AIIKILTEFFGKEPRRTMNASECVARGCALQCAILSP 382 (726)
Q Consensus 331 ~i~~ViLvGG~srip--~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls~ 382 (726)
+++.|+|-||-|+.+ .+.+.+++.+...+ ..-...+.++|||+.|..+..
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~--a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKKV--LVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcccc--cccCCchHHHHHHHHHHHHhC
Confidence 478899999999998 78888988885432 222458889999998876643
No 137
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=64.39 E-value=1.6e+02 Score=31.07 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHc
Q 004867 314 VKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF 355 (726)
Q Consensus 314 i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f 355 (726)
+.+.++++++.. .++.|+|.||.....++++.|.+.+
T Consensus 246 l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 246 LIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 334444555443 4678999999999999999999887
No 138
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=62.66 E-value=2.8e+02 Score=31.75 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=37.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHc---CCCCCCCC---CchhhhhcchHHHHHHhC
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARGCALQCAILS 381 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eaVa~GAa~~aa~ls 381 (726)
.+..|+|+||.....++++.|.+.+ |.++..+. -.|.+++.|++.+....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3567999999999999999999665 43443332 467889999887655443
No 139
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=61.35 E-value=95 Score=30.89 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCC--CCCCCCchhhhhcchHHH
Q 004867 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE--PRRTMNASECVARGCALQ 376 (726)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~--v~~~~n~~eaVa~GAa~~ 376 (726)
.++.-+.++-++++...+ -+.|++|||-+-.-.+|+++..+...+ .....|-..|+-.|+-+.
T Consensus 237 tvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MIA 301 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMIA 301 (336)
T ss_pred HHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHHH
Confidence 445555555566665543 467999999999999999999988422 222334556777776543
No 140
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=60.26 E-value=19 Score=42.69 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=37.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcC---CCCCCC---CCchhhhhcchHHHHH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFG---KEPRRT---MNASECVARGCALQCA 378 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg---~~v~~~---~n~~eaVa~GAa~~aa 378 (726)
.++.|+|+||..+...+.+.|.+.++ .++..+ .-.|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998774 333222 3458899999988774
No 141
>PLN02362 hexokinase
Probab=60.19 E-value=99 Score=35.15 Aligned_cols=61 Identities=20% Similarity=0.085 Sum_probs=39.3
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCC--ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEE
Q 004867 143 GIPVYFTDLQRRAVIDAATIAGLH--PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCI 210 (726)
Q Consensus 143 tVPa~f~~~qR~~l~~Aa~~AGl~--~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv 210 (726)
.++.--...-.+.|.+|...-|++ +..++|+.+|..++..... +...+-+=+|-||--+-+
T Consensus 198 ~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~-------~~~~iG~IlGTGtNacY~ 260 (509)
T PLN02362 198 AISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD-------PDTVAAVIIGTGTNACYL 260 (509)
T ss_pred ccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCccceEe
Confidence 344444556788889998888865 7889999999887654321 234444445666554443
No 142
>PLN02914 hexokinase
Probab=60.18 E-value=1.7e+02 Score=33.18 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=42.5
Q ss_pred EEecCCCCHHHHHHHHHHHHHhCCC--ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEe
Q 004867 142 IGIPVYFTDLQRRAVIDAATIAGLH--PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGF 213 (726)
Q Consensus 142 itVPa~f~~~qR~~l~~Aa~~AGl~--~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 213 (726)
+.++.--...-.+.|.+|.+.-|++ +..|+|+.+|..++..... +...+-+=+|-||--+.+-++
T Consensus 197 F~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-------~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 197 FAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-------DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred cccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCeeeEEEeec
Confidence 3444444556778888998877765 7789999999887665432 234444446777666655544
No 143
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=59.45 E-value=30 Score=26.83 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=30.6
Q ss_pred HHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHHHhCCCc
Q 004867 128 IAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHP 167 (726)
Q Consensus 128 ~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~ 167 (726)
....+.... ....++.|+.++..+|..+.+.|...||..
T Consensus 7 ~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 7 IIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 334444322 467889999999999999999999999874
No 144
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=58.99 E-value=14 Score=33.08 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECCc
Q 004867 3 VVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (726)
|++||+|++.++++++..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998754
No 145
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.94 E-value=24 Score=31.65 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.6
Q ss_pred HHHHHhhhcCCCcchHHHHHHHH
Q 004867 663 ETEDWLYEDGEDETKGVYVAKLE 685 (726)
Q Consensus 663 ~~~~WL~~~~~~a~~~~~~~kl~ 685 (726)
..++||++|+...|+++|++|+.
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 35679999999999999998764
No 146
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=57.41 E-value=7.6 Score=41.09 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=30.4
Q ss_pred HHHHHHHHhHHHH----HHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCC
Q 004867 300 RDEFEQISAPILE----RVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE 358 (726)
Q Consensus 300 r~efe~l~~~~~~----~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~ 358 (726)
.++.+++.+.+++ .+.+.|+.++.+.|+++ +..||.+ |++-..+.+.+|.+
T Consensus 247 ~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp------v~~gGaG--~~~a~~lA~~lg~~ 301 (318)
T TIGR03123 247 EEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT------VVAAGAG--EFLAKEAAARLGRE 301 (318)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecch--HHHHHHHHHHcCCC
Confidence 3445555555444 44555555555555543 5556666 77777788878754
No 147
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=56.97 E-value=9.2 Score=36.37 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.8
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 004867 1 MSVVGFDLGNESCIVAVARQ 20 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~ 20 (726)
|-|+|||-|++++..|+...
T Consensus 2 m~iLGIDPgl~~tG~avi~~ 21 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEV 21 (164)
T ss_pred CEEEEEccccCceeEEEEEe
Confidence 78999999999999998653
No 148
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=56.45 E-value=8.8 Score=43.77 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.4
Q ss_pred EEEEEcCccceEEEEEECCc
Q 004867 3 VVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (726)
++|||+|||++++++++..+
T Consensus 4 ~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 79999999999999987543
No 149
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=55.77 E-value=12 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.2
Q ss_pred eEEEEEcCccceEEEEEECCc
Q 004867 2 SVVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~ 22 (726)
.++|||+|||++++.+++.++
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~ 25 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDG 25 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCC
Confidence 689999999999998887653
No 150
>PRK07058 acetate kinase; Provisional
Probab=55.63 E-value=1.2e+02 Score=33.05 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCC-ChHHHHHHHHHHcC
Q 004867 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFG 356 (726)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg 356 (726)
.++-++.++.+.|-...... ..+|.|+++||-+ ..+.|++.+.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34455566666665554443 3699999999999 99999999998764
No 151
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.53 E-value=66 Score=32.72 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=53.6
Q ss_pred EecCCCCHHHHHHHHHHHHH---hCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEE
Q 004867 143 GIPVYFTDLQRRAVIDAATI---AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLK 219 (726)
Q Consensus 143 tVPa~f~~~qR~~l~~Aa~~---AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~ 219 (726)
-+|.+|+. |+.|+.. ++-. ..+++.-.||+....++. .....||+|+|-|++..+++. .+.+.
T Consensus 185 eiPe~FtR-----Mraaa~sal~~~t~-av~mDskfaav~gal~dp------aa~palvVd~GngHttaalvd--edRI~ 250 (342)
T COG4012 185 EIPESFTR-----MRAAAMSALSAGTD-AVAMDSKFAAVMGALVDP------AADPALVVDYGNGHTTAALVD--EDRIV 250 (342)
T ss_pred cCchhHHH-----HHHHHHHHHhcCce-EEEEcchhHhhhhcccCc------ccCceEEEEccCCceEEEEec--CCeEE
Confidence 35666653 3443333 3332 456677777766665543 234789999999999998864 34454
Q ss_pred EEEEecCCCccchHHHHHHHHHHHHH
Q 004867 220 ILGHSFDRSVGGRDFDEVLFQHFAAK 245 (726)
Q Consensus 220 vl~~~~~~~lGG~~iD~~l~~~l~~~ 245 (726)
-+.......+.-..|...|.+++.-+
T Consensus 251 gv~EHHT~~Lspekled~I~rf~~Ge 276 (342)
T COG4012 251 GVYEHHTIRLSPEKLEDQIIRFVEGE 276 (342)
T ss_pred EEeecccccCCHHHHHHHHHHHHhcc
Confidence 44444456666666666665555444
No 152
>PRK02224 chromosome segregation protein; Provisional
Probab=55.18 E-value=1.1e+02 Score=37.75 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHh
Q 004867 597 GMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWL 668 (726)
Q Consensus 597 ~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL 668 (726)
.+++.+..++..++..+..-+.......+++..++...-.++..+. .+...+...++..+...|...+.=+
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~l~~~~~~l 215 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD-QLKAQIEEKEEKDLHERLNGLESEL 215 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999998887655555555555555555555555555553 2333333343444444444444433
No 153
>PRK10331 L-fuculokinase; Provisional
Probab=53.90 E-value=10 Score=42.83 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECC
Q 004867 3 VVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (726)
++|||+|||+++++++...
T Consensus 4 ~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 4 ILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred EEEEecCCCceEEEEEcCC
Confidence 7999999999999988643
No 154
>PLN02405 hexokinase
Probab=53.71 E-value=89 Score=35.42 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCC--ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEe
Q 004867 149 TDLQRRAVIDAATIAGLH--PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGF 213 (726)
Q Consensus 149 ~~~qR~~l~~Aa~~AGl~--~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 213 (726)
...-.+.|.+|...-|++ +..|+|+.++..++..... +...+-+=+|-||--+.+-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-------~~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-------PDVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-------CCceEEEEEeCCeeeEEEeec
Confidence 444566677777766764 7789999999877665431 334444556777665554433
No 155
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=52.51 E-value=11 Score=42.47 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=17.4
Q ss_pred eEEEEEcCccceEEEEEECC
Q 004867 2 SVVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~ 21 (726)
.++|||+|||++++++++..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 37999999999999998754
No 156
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=52.20 E-value=2.5e+02 Score=29.73 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=56.5
Q ss_pred cEEEEecCCCCHHHHHHHHHHHHHhCCCceeee---chhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 004867 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLF---HETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (726)
Q Consensus 139 ~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li---~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (726)
...+|-|.--.+..|.-+.+..-. -+++..|. ..-.|.|+.| ....... ..-+=+|+|-|-|-|-|-.+. .
T Consensus 108 ~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaasw--ts~~v~e-r~ltG~VidsGdgvThvipva--E 181 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASW--TSRQVGE-RFLTGIVIDSGDGVTHVIPVA--E 181 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHH--HHhhhhh-heeeeEEEecCCCeeEEEEee--c
Confidence 467888888888888776655322 23444332 2222223333 2221110 123458999999988765543 2
Q ss_pred CeEEEEEEecCCCccchHHHHHHHHHHHH
Q 004867 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAA 244 (726)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 244 (726)
| +-+.+.-....+.|++++.-+...+.+
T Consensus 182 g-yVigScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 182 G-YVIGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred c-eEEeeeeccccccCCchhHHHHHHhhC
Confidence 2 223333457889999999877766643
No 157
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=52.01 E-value=97 Score=29.00 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=25.7
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEe
Q 004867 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHS 224 (726)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~ 224 (726)
.||-+|.|-..|-.++++..++.++++..+
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g 30 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASG 30 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEee
Confidence 378899999999999999888888877765
No 158
>PLN02939 transferase, transferring glycosyl groups
Probab=51.98 E-value=1.7e+02 Score=35.79 Aligned_cols=124 Identities=14% Similarity=0.160 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHHHHHHHHhhh--hhccCCCHHHHHHHHHHHHHHHHHhhhcCCCc
Q 004867 598 MLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCD--KYQDFVTDSERELFTSKLQETEDWLYEDGEDE 675 (726)
Q Consensus 598 ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a 675 (726)
+-+++++.++.++.+.++-|+..+.+...+.-|++++-++..++.. +-...+.+=+-+.+-++++.++..|+.-...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQV 316 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888888899999999999999999999999999999998841 11222333333445556666555554311000
Q ss_pred ch-HHHHHHHHHHHHhhhHHH---HHHHhhcccHHHHHHHHHHHHHHHHH
Q 004867 676 TK-GVYVAKLEELKKQGDPIE---ERYKEFTDRSSVIDQLAYCINSYREA 721 (726)
Q Consensus 676 ~~-~~~~~kl~~L~~~~~~i~---~R~~e~~~rp~~~~~~~~~~~~~~~~ 721 (726)
.. -...++-++|+..++.+. .+..-++.|+..++.+++.+...+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (977)
T PLN02939 317 EKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEER 366 (977)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 00 001112223333333332 23444556777777776666655443
No 159
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=50.36 E-value=90 Score=34.45 Aligned_cols=47 Identities=23% Similarity=0.457 Sum_probs=35.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHH
Q 004867 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIK 349 (726)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~ 349 (726)
++.+-+-+++.+..++.+++.++++.+.+|..+.++|-.+-.-.+.-
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllG 101 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLG 101 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcC
Confidence 45566677888999999999999999999999999997655444433
No 160
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=50.16 E-value=12 Score=42.76 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.4
Q ss_pred EEEEEcCccceEEEEEECCc
Q 004867 3 VVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (726)
++|||+|||++++++++..+
T Consensus 5 ~lgID~GTts~Ka~l~d~~G 24 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDLNG 24 (520)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 89999999999999987543
No 161
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=50.04 E-value=1.2e+02 Score=31.01 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=29.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCCh
Q 004867 300 RDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRV 344 (726)
Q Consensus 300 r~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sri 344 (726)
++..+.+...++-....+|+..+++.......=..++++||.+++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~ 225 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKL 225 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHh
Confidence 455666666777777777776666653222234679999998654
No 162
>PRK15027 xylulokinase; Provisional
Probab=49.83 E-value=12 Score=42.36 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.7
Q ss_pred EEEEEcCccceEEEEEECC
Q 004867 3 VVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (726)
++|||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEEecccceEEEEEcCC
Confidence 6899999999999988753
No 163
>PRK13318 pantothenate kinase; Reviewed
Probab=48.82 E-value=18 Score=37.27 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=17.4
Q ss_pred EEEEEcCccceEEEEEECCc
Q 004867 3 VVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (726)
+++||+|+|+++++++.++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999988543
No 164
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=47.96 E-value=3.7e+02 Score=28.56 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=30.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHc---CCCCCCCC---Cchhhhhcc
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARG 372 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eaVa~G 372 (726)
.+..|+|+||.....++.+.|.+.+ |.++..+. -.|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 3677999999999999999999965 33333222 346777777
No 165
>PRK13321 pantothenate kinase; Reviewed
Probab=47.64 E-value=19 Score=37.07 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEECC
Q 004867 3 VVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (726)
+++||+|+|++++|++.++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999998855
No 166
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=47.63 E-value=44 Score=34.32 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=37.4
Q ss_pred CCCccEEEEEcCCCChHHHHHHHHHHcC----CCCCCCCCchhhhhcchHH
Q 004867 329 VEDVHMVEVVGSSSRVPAIIKILTEFFG----KEPRRTMNASECVARGCAL 375 (726)
Q Consensus 329 ~~~i~~ViLvGG~srip~v~~~l~~~fg----~~v~~~~n~~eaVa~GAa~ 375 (726)
+..+|+|+|+||..+...+-++|.++.. .-+.-.-+-.+|-|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4679999999999999999999998774 2234455677899999853
No 167
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=47.53 E-value=16 Score=41.71 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECC
Q 004867 3 VVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (726)
++|||+|||+++++++...
T Consensus 2 ~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred EEEEeccccceEEEEEcCC
Confidence 7999999999999988654
No 168
>PLN02295 glycerol kinase
Probab=46.92 E-value=15 Score=42.05 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECC
Q 004867 3 VVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (726)
++|||+|||++++++++..
T Consensus 2 vlgID~GTts~Ka~l~d~~ 20 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRD 20 (512)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 7999999999999988643
No 169
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=46.86 E-value=1.6e+02 Score=30.39 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=34.8
Q ss_pred CCccEEEEEcCCCChHH----HHHHHHHHc---C--CCCC--CCCCchhhhhcchHHHHHHhCCC
Q 004867 330 EDVHMVEVVGSSSRVPA----IIKILTEFF---G--KEPR--RTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 330 ~~i~~ViLvGG~srip~----v~~~l~~~f---g--~~v~--~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
...+.|+|.|-.+++|. |++.|++.| | ..+. ...-----.|.|||+.|..+++.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 35688999999999765 466666666 2 2222 11112223588999998877654
No 170
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=46.80 E-value=18 Score=41.60 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEE
Q 004867 3 VVGFDLGNESCIVAVAR 19 (726)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (726)
++|||+|||.+++++++
T Consensus 3 ~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVD 19 (536)
T ss_pred EEEEecCCCceEEEEEE
Confidence 79999999999999988
No 171
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=46.50 E-value=17 Score=41.83 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.7
Q ss_pred EEEEEcCccceEEEEEECC
Q 004867 3 VVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (726)
++|||+|||+++++++...
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST 20 (541)
T ss_pred EEEEEecCcCEEEEEEcCC
Confidence 7999999999999998643
No 172
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=45.79 E-value=4.2e+02 Score=28.57 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHc
Q 004867 312 ERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF 355 (726)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f 355 (726)
+-+.+.+.++++.. .+..|+++||-+...++|+.|++.+
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 33344444555443 4678999999999999999999987
No 173
>PLN02377 3-ketoacyl-CoA synthase
Probab=45.48 E-value=42 Score=38.02 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=43.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEE-EcCCCChHHHHHHHHHHcCCC
Q 004867 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEV-VGSSSRVPAIIKILTEFFGKE 358 (726)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~srip~v~~~l~~~fg~~ 358 (726)
++...+....-+...++++|+++|+++++||.|+. +.+....|.+-.+|.+.+|.+
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 44444555555677888999999999999999977 345556899999999999854
No 174
>PRK04123 ribulokinase; Provisional
Probab=44.50 E-value=20 Score=41.34 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEE
Q 004867 3 VVGFDLGNESCIVAVAR 19 (726)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (726)
++|||+|||+++++++.
T Consensus 5 ~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 5 VIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEecCCCceEEEEEE
Confidence 79999999999999887
No 175
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=44.27 E-value=56 Score=31.48 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCC-cchHHHHHHHHHHHHhhhHHHHHH
Q 004867 631 EAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGED-ETKGVYVAKLEELKKQGDPIEERY 698 (726)
Q Consensus 631 Es~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~-a~~~~~~~kl~~L~~~~~~i~~R~ 698 (726)
+.|+-.+|..|. .++++|++++ ++.+++++++.+++ .+-++..+.|-.=+++++.+..-+
T Consensus 4 ~efL~~L~~~L~-----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK-----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH-----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 356666666664 3677777655 67777888875433 566777778877788887777543
No 176
>PRK13317 pantothenate kinase; Provisional
Probab=44.09 E-value=26 Score=36.41 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=17.2
Q ss_pred eEEEEEcCccceEEEEEECC
Q 004867 2 SVVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~ 21 (726)
..||||+|+|.+++++..++
T Consensus 3 ~~iGIDiGstt~K~v~~~~~ 22 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLEEK 22 (277)
T ss_pred ceEEEEeCcccEEEEEEcCC
Confidence 46899999999999987654
No 177
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=44.07 E-value=65 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=26.0
Q ss_pred cEEEEecCCCCHHHHHHHHHHHHHhCCCc
Q 004867 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHP 167 (726)
Q Consensus 139 ~~VitVPa~f~~~qR~~l~~Aa~~AGl~~ 167 (726)
...+..|+.++..||..+.+.|+..||..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 36789999999999999999999999864
No 178
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=44.00 E-value=17 Score=41.23 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECC
Q 004867 3 VVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (726)
++|||+|||+++++++...
T Consensus 3 ~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 7999999999999988644
No 179
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=43.39 E-value=19 Score=33.82 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.6
Q ss_pred EEEEEcCccceEEEEEE
Q 004867 3 VVGFDLGNESCIVAVAR 19 (726)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (726)
|+|||.|++++..|+..
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999875
No 180
>PRK00047 glpK glycerol kinase; Provisional
Probab=43.26 E-value=20 Score=40.73 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=16.7
Q ss_pred EEEEEcCccceEEEEEECC
Q 004867 3 VVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (726)
++|||+|||+++++++...
T Consensus 7 ~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 7 ILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 7999999999999988643
No 181
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=43.22 E-value=56 Score=24.99 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCcCcEEEEecCCCCHHHHHHHHHHHHHhCCCc
Q 004867 124 NLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHP 167 (726)
Q Consensus 124 ~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~ 167 (726)
.+.+..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444444454333 45679999 89999999999999998763
No 182
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=42.30 E-value=1.2e+02 Score=30.89 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHhhhhhccCCCHHH-HHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004867 628 NAVEAYVYDMRNKLCDKYQDFVTDSE-RELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (726)
Q Consensus 628 N~LEs~iy~~r~~l~~~~~~~~~~~e-~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 700 (726)
..++.++-.|-..| ++.+. -+-+++..+++-.||..++...+.++|. |...=..++..|...|..
T Consensus 122 ~~~~~~l~~mm~qL-------~SKevLYePmKel~~kyP~wL~~n~~~l~~ed~~-rY~~Q~~~v~~I~~~fE~ 187 (248)
T PF04614_consen 122 EDFDKMLQGMMQQL-------LSKEVLYEPMKELRDKYPEWLEENKSKLSAEDYE-RYEKQYELVKEICAIFEK 187 (248)
T ss_dssp ---HHHHHHHHHHH-------TSHHHHHHHHHHHHHHHHHHHHHHCCCS-HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh-------ccHhhhhhhHHHHHHHhHHHHHhCcCcCCHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 34555554444444 33443 3678899999999999998888887754 444444555556655544
No 183
>PLN02902 pantothenate kinase
Probab=42.14 E-value=1.6e+02 Score=35.51 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=30.8
Q ss_pred CCccEEEEEcCCCC-----hHHHHHHHHHHcC---CCCCCCCCchhhhhcchHHHHH
Q 004867 330 EDVHMVEVVGSSSR-----VPAIIKILTEFFG---KEPRRTMNASECVARGCALQCA 378 (726)
Q Consensus 330 ~~i~~ViLvGG~sr-----ip~v~~~l~~~fg---~~v~~~~n~~eaVa~GAa~~aa 378 (726)
..++.|+++|++-| |..+...+. ++. .+.....+--..-|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 56889999998865 334444444 442 3344455666788899987654
No 184
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=41.20 E-value=48 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=26.3
Q ss_pred cEEEEecCCCCHHHHHHHHHHHHHhCCCce
Q 004867 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHPL 168 (726)
Q Consensus 139 ~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~ 168 (726)
.-.++.|+.+++.+|+.+...|...|+...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 566778999999999999999999998743
No 185
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.17 E-value=4.3e+02 Score=31.24 Aligned_cols=92 Identities=10% Similarity=0.135 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHHh-hcchhHHHhhHHHhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCc
Q 004867 597 GMLPVDVQKAVEKEFEMA-LQDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDE 675 (726)
Q Consensus 597 ~ls~~~~~~~~~~~~~~~-~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a 675 (726)
.++..++..+........ ..-....+..+....+|.-+..+..+|. ..-.+++.+++.+.+++++.=+.. -.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~----~~~~~e~i~~l~e~l~~l~~~l~~--~~~ 442 (650)
T TIGR03185 369 RLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS----TIPSEEQIAQLLEELGEAQNELFR--SEA 442 (650)
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHHHHHHH--HHH
Confidence 455565554433333332 1223344444555566666666666664 223445666666666666555543 122
Q ss_pred chHHHHHHHHHHHHhhhHH
Q 004867 676 TKGVYVAKLEELKKQGDPI 694 (726)
Q Consensus 676 ~~~~~~~kl~~L~~~~~~i 694 (726)
..+.++.++..++.-...+
T Consensus 443 ~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 443 EIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333
No 186
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=40.28 E-value=24 Score=38.35 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCc
Q 004867 3 VVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (726)
++|||+|+|.+++++++.++
T Consensus 4 ~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred EEEEEcCchhEEEEEEcCCC
Confidence 79999999999999888654
No 187
>PLN02596 hexokinase-like
Probab=39.39 E-value=1.3e+02 Score=34.00 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCC--CceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEee
Q 004867 150 DLQRRAVIDAATIAGL--HPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFK 214 (726)
Q Consensus 150 ~~qR~~l~~Aa~~AGl--~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~ 214 (726)
..-.+.+.+|...-|+ +++.++|+.+|..++.+... +...+-+=+|-||--+.+-++.
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~-------~~~~iG~I~GTGtNacY~E~~~ 264 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN-------KDTVAAVTLGMGTNAAYVEPAQ 264 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC-------CCeEEEEEEecccceEEEEEcc
Confidence 3344555666665565 47889999999887765432 2334334478776666555443
No 188
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=38.51 E-value=46 Score=30.80 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=18.1
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 004867 1 MSVVGFDLGNESCIVAVARQ 20 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~ 20 (726)
|.|++||.|+-|...++...
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 88999999999999998764
No 189
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=38.11 E-value=6.3e+02 Score=31.56 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=7.2
Q ss_pred HhhHHHHHHHHHHHh
Q 004867 627 KNAVEAYVYDMRNKL 641 (726)
Q Consensus 627 kN~LEs~iy~~r~~l 641 (726)
...|+.+|-.+|+.|
T Consensus 1470 ~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFL 1484 (1758)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444555555554
No 190
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=37.61 E-value=15 Score=40.66 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=39.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHcC------CC---------CCCCCCchhhhhcchHHHHHHhC
Q 004867 332 VHMVEVVGSSSRVPAIIKILTEFFG------KE---------PRRTMNASECVARGCALQCAILS 381 (726)
Q Consensus 332 i~~ViLvGG~srip~v~~~l~~~fg------~~---------v~~~~n~~eaVa~GAa~~aa~ls 381 (726)
.+.|.+|||+...|.+...|++... .. ..+..||...+=.|||+++..-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 5789999999999999999998762 11 12347888888899999987644
No 191
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=37.51 E-value=6.4e+02 Score=28.38 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=49.6
Q ss_pred EEecCCCCHHHHHHHHHHHHHhCCC---ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEee
Q 004867 142 IGIPVYFTDLQRRAVIDAATIAGLH---PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFK 214 (726)
Q Consensus 142 itVPa~f~~~qR~~l~~Aa~~AGl~---~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~ 214 (726)
+.++......--+.+.+|.+.-|+. +..++|+.++..++.... .+.+++-+=+|.||--+-+.+..
T Consensus 183 f~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~-------~~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 183 FKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYE-------DPNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred ccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceec-------CCCcEEEEEECCCccceeeeecc
Confidence 4455555666788999999999886 778999999987765432 24677777789998877776665
No 192
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.30 E-value=4e+02 Score=32.29 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHH-HhhcchhHHHhhHHHhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcC---
Q 004867 597 GMLPVDVQKAVEKEFE-MALQDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDG--- 672 (726)
Q Consensus 597 ~ls~~~~~~~~~~~~~-~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~--- 672 (726)
||+++-+++..+.+.. ...-++....+.+.+..+|...-.+...+. +.+++.+.+.+..+||....
T Consensus 498 Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~----------e~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 498 GLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLK----------EAEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888877777765433 223334444444444444444443333332 23344444444444554321
Q ss_pred CCcchHHHHHHHHHHHHhhhHHHHHHHhh------cccHHHHHHHHHHHHHHHH
Q 004867 673 EDETKGVYVAKLEELKKQGDPIEERYKEF------TDRSSVIDQLAYCINSYRE 720 (726)
Q Consensus 673 ~~a~~~~~~~kl~~L~~~~~~i~~R~~e~------~~rp~~~~~~~~~~~~~~~ 720 (726)
...-.+++++.+++.+..++.+...+++. ....+.....++.++.++.
T Consensus 568 ~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (782)
T PRK00409 568 LEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANE 621 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhh
Confidence 11233455666666666666666666552 2344555555555555443
No 193
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.53 E-value=1.5e+02 Score=30.18 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHH
Q 004867 628 NAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEE 696 (726)
Q Consensus 628 N~LEs~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~ 696 (726)
+.+|.++-.+-+.|... +. --.-+++....|=.||.++++...++. .+|.+.-.+++..|..
T Consensus 142 g~le~~m~~iMqqllSK--EI----LyeplKEl~~~YPkwLeen~e~l~~E~-~erYqkQ~~~i~~i~~ 203 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSK--EI----LYEPLKELGANYPKWLEENGESLSKED-KERYQKQFELIKEIES 203 (267)
T ss_pred ccHHHHHHHHHHHHHHH--HH----hhhhHHHHHHHhhHHHHhcccccCHHH-HHHHHHHHHHHHHHHH
Confidence 56666666666555311 11 124577888999999999988776654 3355555555555554
No 194
>PLN03173 chalcone synthase; Provisional
Probab=36.15 E-value=1.2e+02 Score=33.34 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCC-ChHHHHHHHHHHcCCC
Q 004867 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFGKE 358 (726)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg~~ 358 (726)
...+-..+.++++|+++|+++.+|+.|+++..+. ..|.+--.|.+.+|.+
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~ 151 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLR 151 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCC
Confidence 3444455678899999999999999998876544 5899999999999854
No 195
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.06 E-value=5.1e+02 Score=31.30 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHh-hcchhHHHhhHHHhhHHHHHHHHHHHh
Q 004867 597 GMLPVDVQKAVEKEFEMA-LQDRVMEETKDRKNAVEAYVYDMRNKL 641 (726)
Q Consensus 597 ~ls~~~~~~~~~~~~~~~-~~D~~~~~~~~akN~LEs~iy~~r~~l 641 (726)
||+++-+++..+...... .-++....+.+.+..+|...-.++..+
T Consensus 493 Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~ 538 (771)
T TIGR01069 493 GIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLL 538 (771)
T ss_pred CcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688887777776554332 334444555555555555544444444
No 196
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=34.25 E-value=2e+02 Score=23.34 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=18.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHh
Q 004867 700 EFTDRSSVIDQLAYCINSYREAAL 723 (726)
Q Consensus 700 e~~~rp~~~~~~~~~~~~~~~~~~ 723 (726)
-+..||+.|+.+...=+..+..++
T Consensus 48 yy~kRp~Li~~vee~yr~YrsLAe 71 (74)
T PF07765_consen 48 YYKKRPELISLVEEFYRSYRSLAE 71 (74)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887777777664
No 197
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=33.70 E-value=39 Score=33.46 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=26.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---ceeeechhHHHHHHhh
Q 004867 145 PVYFTDLQRRAVIDAATIAGLH---PLRLFHETTATALAYG 182 (726)
Q Consensus 145 Pa~f~~~qR~~l~~Aa~~AGl~---~~~li~Ep~AaAl~y~ 182 (726)
|..-...-.+.+.+|....|++ ++.++|+.+|..++.+
T Consensus 163 ~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~ 203 (206)
T PF00349_consen 163 SGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGA 203 (206)
T ss_dssp BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHH
T ss_pred cCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhh
Confidence 3333444566777888878876 6788999999887654
No 198
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=33.44 E-value=28 Score=31.73 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.9
Q ss_pred EEEEcCccceEEEEEEC
Q 004867 4 VGFDLGNESCIVAVARQ 20 (726)
Q Consensus 4 vGID~GTt~s~va~~~~ 20 (726)
+|||+|+..+.+|+...
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998754
No 199
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=33.31 E-value=57 Score=28.93 Aligned_cols=49 Identities=29% Similarity=0.537 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCCh--HHHHHHHHHHcCC
Q 004867 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRV--PAIIKILTEFFGK 357 (726)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sri--p~v~~~l~~~fg~ 357 (726)
|--..+...|+++|+++++.+.+|+.|...|-++.. +.=.+.|.+.|+.
T Consensus 22 p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 22 PNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp TTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred cCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 344566778999999999999999999998877775 3334467788863
No 200
>PLN03170 chalcone synthase; Provisional
Probab=33.11 E-value=1.1e+02 Score=33.61 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCC-ChHHHHHHHHHHcCCC
Q 004867 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFGKE 358 (726)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg~~ 358 (726)
...+-..+..+++|+++|+++++|+.|+++-.+. .+|.+.-.|.+.+|.+
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 155 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLR 155 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcC
Confidence 4444556778999999999999999998776544 6999999999999854
No 201
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=32.92 E-value=44 Score=36.11 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=33.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcC--CCC--CCCCCchhhhhcchH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFG--KEP--RRTMNASECVARGCA 374 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg--~~v--~~~~n~~eaVa~GAa 374 (726)
+++.|++.||.+..+.+.+.|.+.+. .++ ....+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 58999999999999989999988875 333 333455678888875
No 202
>PLN02669 xylulokinase
Probab=32.75 E-value=38 Score=39.12 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.0
Q ss_pred eEEEEEcCccceEEEEEECC
Q 004867 2 SVVGFDLGNESCIVAVARQR 21 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~ 21 (726)
-++|||+||+.+++++++..
T Consensus 9 ~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred eEEEEecccCCeEEEEEcCC
Confidence 37999999999999888643
No 203
>PRK13331 pantothenate kinase; Reviewed
Probab=32.24 E-value=47 Score=33.94 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=19.1
Q ss_pred CeEEEEEcCccceEEEEEECCc
Q 004867 1 MSVVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (726)
|-++.||.|+|+++++++.++.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 5689999999999999998654
No 204
>PRK03918 chromosome segregation protein; Provisional
Probab=32.07 E-value=6.1e+02 Score=31.10 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHH
Q 004867 648 FVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIE 695 (726)
Q Consensus 648 ~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~ 695 (726)
..++++.+.+...+..++..+..- ....+.++.+++.|..-...+.
T Consensus 655 ~~~~~~~~~l~~~~~~l~~~l~~l--~~~~~~l~~~i~~l~~~i~~~~ 700 (880)
T PRK03918 655 KYSEEEYEELREEYLELSRELAGL--RAELEELEKRREEIKKTLEKLK 700 (880)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888877777642 2244445555555555444443
No 205
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=32.05 E-value=4e+02 Score=27.37 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Q 004867 650 TDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAA 722 (726)
Q Consensus 650 ~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~rp~~~~~~~~~~~~~~~~~ 722 (726)
-.+.++++.+.|..-..||.+. ..-.+.+..+.++|++...+. +. ..++..++.++..++.+.
T Consensus 108 ~q~KnekLke~LerEq~wL~Eq--qql~~sL~~r~~elk~~~~~~-------se-~rv~~el~~K~~~~k~~~ 170 (268)
T PF11802_consen 108 VQSKNEKLKEDLEREQQWLDEQ--QQLLESLNKRHEELKNQVETF-------SE-SRVFQELKTKIEKIKEYK 170 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcc-------ch-HHHHHHHHHHHHHHHHHH
Confidence 3556788899999999999874 222334445555555433222 22 244455555555554443
No 206
>PLN03172 chalcone synthase family protein; Provisional
Probab=31.48 E-value=1.4e+02 Score=32.93 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCC-ChHHHHHHHHHHcCCC
Q 004867 308 APILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFGKE 358 (726)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg~~ 358 (726)
+...+-..+.++++|+++|+.+.+|+.|+++..+. .+|.+--.|.+.+|.+
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 34444556678899999999999999998776554 6999999999999854
No 207
>PRK09557 fructokinase; Reviewed
Probab=31.24 E-value=75 Score=33.33 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=28.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcC---------CCCCCCCCchhhhhcchHHHH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFG---------KEPRRTMNASECVARGCALQC 377 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg---------~~v~~~~n~~eaVa~GAa~~a 377 (726)
+++.|+|-||.++.+.+...|++.+. .++....-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 46788888887777666555555442 112233344667889998653
No 208
>PF13941 MutL: MutL protein
Probab=31.07 E-value=51 Score=36.77 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.1
Q ss_pred eEEEEEcCccceEEEEEE--CCceEEEe
Q 004867 2 SVVGFDLGNESCIVAVAR--QRGIDVVL 27 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~--~~~~~ii~ 27 (726)
.++.+|||||||++..+. .+..+++-
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig 28 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIG 28 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEE
Confidence 378999999999999887 66666663
No 209
>PHA02557 22 prohead core protein; Provisional
Probab=31.05 E-value=3.5e+02 Score=27.69 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHH-HHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHH
Q 004867 602 DVQKAVEKEFEMALQDRVMEETKDRKNAVEAYV-YDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVY 680 (726)
Q Consensus 602 ~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~i-y~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~ 680 (726)
.+..|..++.++ ..+.....+..+.|+.+| |..|+.+-.+-..-+++.+++++...+.-++= -+.|
T Consensus 142 vV~em~~~L~E~---e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egvef----------~e~F 208 (271)
T PHA02557 142 VVAEMEEELDEM---EEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLEF----------SETF 208 (271)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccch----------hhHH
Confidence 456666655554 344556667778888888 66777776566788999999999888766542 3678
Q ss_pred HHHHHHHHHhhhHHHH
Q 004867 681 VAKLEELKKQGDPIEE 696 (726)
Q Consensus 681 ~~kl~~L~~~~~~i~~ 696 (726)
..||..|...+.+...
T Consensus 209 ~~kl~~i~E~v~~~~~ 224 (271)
T PHA02557 209 SKKLTAIVEMVFKSKD 224 (271)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999888876643
No 210
>PLN02854 3-ketoacyl-CoA synthase
Probab=30.58 E-value=1e+02 Score=35.15 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEE-EcCCCChHHHHHHHHHHcCCC
Q 004867 311 LERVKRPLEKALAETGLSVEDVHMVEV-VGSSSRVPAIIKILTEFFGKE 358 (726)
Q Consensus 311 ~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~srip~v~~~l~~~fg~~ 358 (726)
-.-+...++++|+++|+++++||.|++ +.+....|.+-.+|.+.+|.+
T Consensus 189 ~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 189 EAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 334456677889999999999999987 344445899999999999854
No 211
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=30.57 E-value=26 Score=32.77 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.0
Q ss_pred EEEEEcCccceEEEEEEC
Q 004867 3 VVGFDLGNESCIVAVARQ 20 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~ 20 (726)
|+|||-|++++..|+...
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 799999999999998753
No 212
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.51 E-value=63 Score=34.44 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004867 660 KLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTD 703 (726)
Q Consensus 660 ~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~ 703 (726)
.|+++++||-.+ +. +++.+.+++.+-+..+.||.-++.|+-.
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~ 50 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQ 50 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 578899999854 44 9999999999999999999988888753
No 213
>PRK00292 glk glucokinase; Provisional
Probab=30.45 E-value=46 Score=35.29 Aligned_cols=49 Identities=27% Similarity=0.167 Sum_probs=29.6
Q ss_pred HhCCCceeeechhHHHHHHhhhhc-------CCCCCCCCceEEEEEeCCceeEEEEE
Q 004867 162 IAGLHPLRLFHETTATALAYGIYK-------TDLPENDQLNVAFVDIGHASLQVCIA 211 (726)
Q Consensus 162 ~AGl~~~~li~Ep~AaAl~y~~~~-------~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (726)
..|++.+.+.|+-.|+|++-.... .........+++++-+|.| +-.+++
T Consensus 89 ~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 89 ELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 458777899999999998753210 0000001367888888876 334443
No 214
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.39 E-value=1.4e+02 Score=34.68 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=43.9
Q ss_pred HHhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhhcC-------CCcc---hHHHHHHHHHHHHhhhHHH
Q 004867 626 RKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDG-------EDET---KGVYVAKLEELKKQGDPIE 695 (726)
Q Consensus 626 akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~-------~~a~---~~~~~~kl~~L~~~~~~i~ 695 (726)
+...|+..|-.+|..+. ++.++....+++.+.||.... -.++ .++...+.++|.+.+.||.
T Consensus 653 ~~d~~~~~i~~~r~~~~---------~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~ 723 (727)
T KOG0103|consen 653 AFDELGKKIQEIRKAIE---------SEMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDII 723 (727)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccc
Confidence 33444444555554443 278889999999999998742 1233 3788999999999999987
Q ss_pred HH
Q 004867 696 ER 697 (726)
Q Consensus 696 ~R 697 (726)
.+
T Consensus 724 ~~ 725 (727)
T KOG0103|consen 724 SK 725 (727)
T ss_pred cc
Confidence 63
No 215
>PRK10869 recombination and repair protein; Provisional
Probab=30.15 E-value=9.1e+02 Score=27.89 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhcchhHH----HhhHHHhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhh
Q 004867 602 DVQKAVEKEFEMALQDRVME----ETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLY 669 (726)
Q Consensus 602 ~~~~~~~~~~~~~~~D~~~~----~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~ 669 (726)
.+......+..+...|.... ...++...||...+.+++.+++ -...|++.+.+.+.|..+..--.
T Consensus 245 ~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~dp~~l~~ie~Rl~~l~~L~r 313 (553)
T PRK10869 245 QLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDR---LDLDPNRLAELEQRLSKQISLAR 313 (553)
T ss_pred HHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666564333 3333445555555555554431 13466666666666655554443
No 216
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=29.82 E-value=1.8e+02 Score=24.50 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHH
Q 004867 648 FVTDSERELFTSKLQETEDWLYEDGEDETKGVYV 681 (726)
Q Consensus 648 ~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~ 681 (726)
.+-|+-+..|...+.++++||.........++++
T Consensus 55 ~mipd~~~RL~~a~~~L~~~l~~~~~~ee~~~ak 88 (90)
T PF02970_consen 55 MMIPDCQQRLEKAVEDLEEFLEEEEGLEELEEAK 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHCcCchhHHHHh
Confidence 4457778888999999999998764455555544
No 217
>PLN03168 chalcone synthase; Provisional
Probab=29.70 E-value=1.5e+02 Score=32.55 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=40.6
Q ss_pred HhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCC-CChHHHHHHHHHHcCCC
Q 004867 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFFGKE 358 (726)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-srip~v~~~l~~~fg~~ 358 (726)
.+...+-..+..+++|+++|+++++|+.|+++-.+ -.+|.+--.|.+.+|.+
T Consensus 98 ~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 98 VVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 33444555677899999999999999999877433 35899999999999854
No 218
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=29.69 E-value=2.2e+02 Score=24.78 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=28.3
Q ss_pred HhhHHHhhHHHHHHHHHHHhhhh-h-ccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHHH
Q 004867 622 ETKDRKNAVEAYVYDMRNKLCDK-Y-QDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEE 696 (726)
Q Consensus 622 ~~~~akN~LEs~iy~~r~~l~~~-~-~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~~ 696 (726)
.....+|.++.-++.+...|++. . .+-+ ..+++.+.+.+..+.. ......+++.+|+..+..+..
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL-~kqkd~L~~~l~~L~~---------q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGEL-AKQKDQLRNALQSLQA---------QNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHH-HHhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888877631 0 0011 3444444444444332 233344555555555555444
No 219
>PRK13326 pantothenate kinase; Reviewed
Probab=29.56 E-value=55 Score=33.77 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.4
Q ss_pred eEEEEEcCccceEEEEEECCc
Q 004867 2 SVVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~ 22 (726)
.++.||.|+|+++++++.+++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 478999999999999998654
No 220
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=29.51 E-value=2.9e+02 Score=25.66 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=24.0
Q ss_pred EEEEEeCCceeEEEEEEeeCCeEEEEEEe
Q 004867 196 VAFVDIGHASLQVCIAGFKKGQLKILGHS 224 (726)
Q Consensus 196 vlv~D~Gggt~dvsvv~~~~~~~~vl~~~ 224 (726)
||-+|-|-.+|-.+|++..++.++.+.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G 29 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYG 29 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeC
Confidence 57799999999999999998888888876
No 221
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.45 E-value=1.6e+02 Score=30.14 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=44.1
Q ss_pred eEEEEEeCCceeEEEEEEeeCC-eEE----------------------EEEEecCCCccchHHHHHHHHHHHHHHHhhhc
Q 004867 195 NVAFVDIGHASLQVCIAGFKKG-QLK----------------------ILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYK 251 (726)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~-~~~----------------------vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~ 251 (726)
++|++|+|.||.|+-.+.-... .+. -+... +...||--.+.++..|+..-
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~G------ 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKKG------ 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhcC------
Confidence 5799999999999877644310 000 11222 35689999999999887542
Q ss_pred cCccCCHHHHHHHHHHHHHHhh
Q 004867 252 IDVSQNARASLRLRVACEKLKK 273 (726)
Q Consensus 252 ~~~~~~~~~~~rL~~~ae~~K~ 273 (726)
..+-...++-.-|.+..|+++.
T Consensus 75 ~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHh
Confidence 2333344444555555666554
No 222
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=29.27 E-value=1.4e+02 Score=31.36 Aligned_cols=44 Identities=16% Similarity=0.045 Sum_probs=28.4
Q ss_pred hCCCceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 004867 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (726)
Q Consensus 163 AGl~~~~li~Ep~AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (726)
.|++ +.+.|+..|+|++-....... ...+++++.+|.| .-.+++
T Consensus 96 ~~~p-V~ieNDa~aaalaE~~~g~~~---~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 96 LGRD-VRLDNDANCFALSEAWDDEFT---QYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HCCC-eEEeccHhHHHHHHhhhcccc---CCCcEEEEEecCc-eEEEEE
Confidence 4775 679999999998754332111 2467888889866 344443
No 223
>PRK10869 recombination and repair protein; Provisional
Probab=29.22 E-value=5.3e+02 Score=29.80 Aligned_cols=124 Identities=12% Similarity=0.182 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHH--------HHHHHHHHhhhhhccCC---------CHHHHHHHHHHH
Q 004867 599 LPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA--------YVYDMRNKLCDKYQDFV---------TDSERELFTSKL 661 (726)
Q Consensus 599 s~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs--------~iy~~r~~l~~~~~~~~---------~~~e~~~i~~~l 661 (726)
.+.+-+++.++...+...++.......+.+.|.. .+..+.+.|.. +..+- -.+-...+.+..
T Consensus 203 ~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~-~~~~d~~~~~~~~~l~~~~~~l~~~~ 281 (553)
T PRK10869 203 QPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSE-LIGMDSKLSGVLDMLEEALIQIQEAS 281 (553)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HhhhCHhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555522 23333333321 11111 011122333334
Q ss_pred HHHHHHhhh-cCCCcchHHHHHHHHHHHHhhh--------------HHHHHHHhhcccHHHHHHHHHHHHHHHHHHh
Q 004867 662 QETEDWLYE-DGEDETKGVYVAKLEELKKQGD--------------PIEERYKEFTDRSSVIDQLAYCINSYREAAL 723 (726)
Q Consensus 662 ~~~~~WL~~-~~~~a~~~~~~~kl~~L~~~~~--------------~i~~R~~e~~~rp~~~~~~~~~~~~~~~~~~ 723 (726)
.++..++++ +.+....+++++||..|+.+.. .+..+..+.......++.|++.+..++..+.
T Consensus 282 ~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~ 358 (553)
T PRK10869 282 DELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQAL 358 (553)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 444444443 2233445788888888887654 3446666667777778888877777766554
No 224
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=28.92 E-value=6.5e+02 Score=25.78 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=7.8
Q ss_pred CCCHHHHHHHHHHHH
Q 004867 597 GMLPVDVQKAVEKEF 611 (726)
Q Consensus 597 ~ls~~~~~~~~~~~~ 611 (726)
.++.+++.++.++..
T Consensus 119 ~~~~~~l~~~l~ea~ 133 (264)
T PF06008_consen 119 QLPSEDLQRALAEAQ 133 (264)
T ss_pred CCCHHHHHHHHHHHH
Confidence 455555555554443
No 225
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=28.90 E-value=62 Score=35.45 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=24.6
Q ss_pred CCceEEEEEeCCceeEEEEEEee-CCeEEEE
Q 004867 192 DQLNVAFVDIGHASLQVCIAGFK-KGQLKIL 221 (726)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~-~~~~~vl 221 (726)
+.+.+|++|+||..+-+++|++. +|.+.+-
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 46789999999999999999998 4455443
No 226
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=28.53 E-value=1.4e+02 Score=31.13 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEE-cCCCChHHHHHHHHHHcCCC
Q 004867 313 RVKRPLEKALAETGLSVEDVHMVEVV-GSSSRVPAIIKILTEFFGKE 358 (726)
Q Consensus 313 ~i~~~i~~~l~~~~~~~~~i~~ViLv-GG~srip~v~~~l~~~fg~~ 358 (726)
-+...|+++|+++|+++.+||.++.. ..++-.|.+-.+|-+.||.+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 34567888999999999999976544 67789999999999999843
No 227
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=28.36 E-value=1.4e+02 Score=30.99 Aligned_cols=51 Identities=18% Similarity=0.095 Sum_probs=32.7
Q ss_pred cEEEEEcCCCC-hHHHHHHHHHHcC----CCCCCCCCchhhhhcchHHHHHHhCCC
Q 004867 333 HMVEVVGSSSR-VPAIIKILTEFFG----KEPRRTMNASECVARGCALQCAILSPT 383 (726)
Q Consensus 333 ~~ViLvGG~sr-ip~v~~~l~~~fg----~~v~~~~n~~eaVa~GAa~~aa~ls~~ 383 (726)
=.|+++||.-. ...+++-....+. -+-.....|-++-|.|||+.||.+.+.
T Consensus 265 l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~~ 320 (336)
T KOG1794|consen 265 LPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDNI 320 (336)
T ss_pred ceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhccc
Confidence 36899999744 3444444333321 122345578888899999999987654
No 228
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=28.12 E-value=2.6e+02 Score=31.45 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCceeEEEEEEeeCCe
Q 004867 192 DQLNVAFVDIGHASLQVCIAGFKKGQ 217 (726)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~~~~ 217 (726)
+...++.+|+||..+-|..+.+.++.
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCc
Confidence 46789999999999999999998773
No 229
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=27.03 E-value=1.2e+02 Score=31.02 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=32.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCA 374 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa 374 (726)
.++.|+| |+|-.|++.+.+++.+|.++ .-+||.+++|+=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 4676554 99999999999999998654 56799888876554
No 230
>PRK13324 pantothenate kinase; Reviewed
Probab=26.92 E-value=65 Score=33.12 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEECCc
Q 004867 3 VVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (726)
++.||.|+|+++.+++.+++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999988543
No 231
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=26.57 E-value=5.6e+02 Score=24.28 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=77.0
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhh
Q 004867 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKV 274 (726)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 274 (726)
.+|=+|-|-..|=.++++..++.+.++..+.-..-+...+-++|. ...+.+...
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~~~~~~~~Rl~--------------------------~I~~~l~~~ 56 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTPSDLDLPERLK--------------------------QIYDGLSEL 56 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEEEeeEEECCCCCCHHHHHH--------------------------HHHHHHHHH
Confidence 578899999999999999887767777665222222222222222 222222222
Q ss_pred cCCCCcccEEeccccCCcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-----CCCccEEEEEc-CCCChHHHH
Q 004867 275 LSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLS-----VEDVHMVEVVG-SSSRVPAII 348 (726)
Q Consensus 275 Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~-----~~~i~~ViLvG-G~srip~v~ 348 (726)
+....-..+.+|.++-+.+. ... -.+......+..++...++. +..+... ++| |...=--|+
T Consensus 57 i~~~~Pd~vaiE~~f~~~n~---------~sa--~~l~~arGvi~la~~~~~ipv~ey~P~~VKk~-vtG~G~A~K~qV~ 124 (164)
T PRK00039 57 IDEYQPDEVAIEEVFFNKNP---------QSA--LKLGQARGVAILAAAQRGLPVAEYTPLQVKKA-VVGYGRADKEQVQ 124 (164)
T ss_pred HHHhCCCEEEEehhhhccCh---------HHH--HHHHHHHHHHHHHHHHcCCCEEEECHHHhhhh-hcCCCCCCHHHHH
Confidence 22212223445543211111 011 12233445555566665554 3334433 344 334445788
Q ss_pred HHHHHHcCCCCCCCCCchhhhhcchHHHHHHhC
Q 004867 349 KILTEFFGKEPRRTMNASECVARGCALQCAILS 381 (726)
Q Consensus 349 ~~l~~~fg~~v~~~~n~~eaVa~GAa~~aa~ls 381 (726)
.+++..++..- .+.+.|++=|++.|+.++...
T Consensus 125 ~mv~~~l~l~~-~~~~~D~aDAlAiA~~h~~~~ 156 (164)
T PRK00039 125 HMVKRLLNLPE-IPKPDDAADALAIAICHAHRR 156 (164)
T ss_pred HHHHHHhCCCC-CCCCCCHHHHHHHHHHHHhhc
Confidence 99999998543 233347777777777766543
No 232
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=26.22 E-value=1e+02 Score=28.28 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=32.6
Q ss_pred HhhHHHHHHHHHHHhhhhhccCCCHHHHHHH----HHHHHHHHHHhhhcCC
Q 004867 627 KNAVEAYVYDMRNKLCDKYQDFVTDSERELF----TSKLQETEDWLYEDGE 673 (726)
Q Consensus 627 kN~LEs~iy~~r~~l~~~~~~~~~~~e~~~i----~~~l~~~~~WL~~~~~ 673 (726)
.+.||.+++++-+=-...|..+++.+|..++ .+.++.+..||...|-
T Consensus 26 ~~~L~~~l~~vsdP~s~~Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G~ 76 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGSPNYGKYLTPEEFAALFAPSPEDVAAVKSWLKSHGL 76 (143)
T ss_dssp HHHHHHHHHHHHTTTSTTTT----HHHHHHHHS--HHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHhCcCCCCcccccCCCHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 4678888888766555568899999998875 4568999999998763
No 233
>PRK13320 pantothenate kinase; Reviewed
Probab=26.18 E-value=71 Score=32.57 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.2
Q ss_pred eEEEEEcCccceEEEEEECCc
Q 004867 2 SVVGFDLGNESCIVAVARQRG 22 (726)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~ 22 (726)
-++.||.|+|+++.+++.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 479999999999999988654
No 234
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.15 E-value=58 Score=36.19 Aligned_cols=62 Identities=24% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHH-----hCCC------ceeeechhHHHHHHhhhhcCCCCCCCC-ceEEEEEeCCceeEEEEE
Q 004867 150 DLQRRAVIDAATI-----AGLH------PLRLFHETTATALAYGIYKTDLPENDQ-LNVAFVDIGHASLQVCIA 211 (726)
Q Consensus 150 ~~qR~~l~~Aa~~-----AGl~------~~~li~Ep~AaAl~y~~~~~~~~~~~~-~~vlv~D~Gggt~dvsvv 211 (726)
...|+++++.... =|++ ...++.=|.|+..+.-+-........+ ..++++|+||-|||+--+
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv 266 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSA 266 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhc
Confidence 3567777776321 1443 224555566654333222221111112 359999999999997543
No 235
>PF13941 MutL: MutL protein
Probab=24.60 E-value=1.8e+02 Score=32.64 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=33.5
Q ss_pred EEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccch-HHHHHHHHH
Q 004867 196 VAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGR-DFDEVLFQH 241 (726)
Q Consensus 196 vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~-~iD~~l~~~ 241 (726)
+|++|||+.+|-++++....+..++++.+....-=.. |+..-+.+-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A 48 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNA 48 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHH
Confidence 7999999999999999977788888888744432233 555554433
No 236
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=24.58 E-value=10 Score=35.72 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.6
Q ss_pred EEEEEcCccceEEEEEEC
Q 004867 3 VVGFDLGNESCIVAVARQ 20 (726)
Q Consensus 3 vvGID~GTt~s~va~~~~ 20 (726)
++|+|+||+|++++...+
T Consensus 59 ~~g~~~gt~n~~~~~~e~ 76 (213)
T PLN00130 59 ILGTGLGTNNAIREEREK 76 (213)
T ss_pred eeccCCCcchHHHHHHhc
Confidence 699999999999887654
No 237
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.42 E-value=1.1e+03 Score=27.11 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcchh----HHHhhHHHhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhh
Q 004867 602 DVQKAVEKEFEMALQDRV----MEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYE 670 (726)
Q Consensus 602 ~~~~~~~~~~~~~~~D~~----~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~ 670 (726)
.+......+..+ .|.. .....++...||...+.+++.+++ --..|+..+.+.+.+.....-..-
T Consensus 252 ~l~~~~~~l~~~--~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~---l~~dp~~L~ele~RL~~l~~LkrK 319 (563)
T TIGR00634 252 GLGEAQLALASV--IDGSLRELAEQVGNALTEVEEATRELQNYLDE---LEFDPERLNEIEERLAQIKRLKRK 319 (563)
T ss_pred HHHHHHHHHHHh--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554 3322 223333444555555555554432 145677777777777776665443
No 238
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.15 E-value=7.5e+02 Score=25.57 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 004867 681 VAKLEELKKQGDPIEERYK 699 (726)
Q Consensus 681 ~~kl~~L~~~~~~i~~R~~ 699 (726)
.+.+++|++++.-+.....
T Consensus 123 RkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 123 RKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3444455555544444433
No 239
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=24.03 E-value=3.1e+02 Score=28.81 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=34.6
Q ss_pred CCceEEEEEeCCceeEEEEEEeeCCeEEEEEEecCCCccchHHHHHHHHHHHH
Q 004867 192 DQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAA 244 (726)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 244 (726)
...+++-+|+|+.++.++++......+..........-....+-+.|.+.+.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~ 56 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAE 56 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHH
Confidence 36789999999999999999888765444444433333334555555554443
No 240
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.98 E-value=8.2e+02 Score=30.62 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004867 653 ERELFTSKLQETEDWLYE 670 (726)
Q Consensus 653 e~~~i~~~l~~~~~WL~~ 670 (726)
.++++.+++.++.++|..
T Consensus 1469 s~~el~~Li~~v~~Flt~ 1486 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQ 1486 (1758)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344445555555555544
No 241
>PRK00865 glutamate racemase; Provisional
Probab=23.96 E-value=1.5e+02 Score=30.54 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=32.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhhcchHH
Q 004867 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (726)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa~GAa~ 375 (726)
.++.|+| |++-+|++.+.+++.++..+ .-+||.+++|.-+.-
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~~~v-~vIDp~~~~a~~~~~ 218 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLGEGV-TLIDSGEAIARRVAR 218 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcCCCC-EEECCHHHHHHHHHH
Confidence 4676655 99999999999999998544 457888887766643
No 242
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=23.93 E-value=2.9e+02 Score=26.06 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCCCCHHH----------------HHHHHHHHHHhCCCceeeechhHH
Q 004867 113 TPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQ----------------RRAVIDAATIAGLHPLRLFHETTA 176 (726)
Q Consensus 113 ~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~q----------------R~~l~~Aa~~AGl~~~~li~Ep~A 176 (726)
++++++..+.+.+.+..... +.. .+.|++|..++... .+.+.+ ..++ .+.+.|+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~-~~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~-pv~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADY-GRS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGV-PVIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-TCE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTS-EEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhc-ccc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccce-EEEEecCCCc
Confidence 45666666665555554443 211 55566665554322 122332 2355 4678999999
Q ss_pred HHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 004867 177 TALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (726)
Q Consensus 177 aAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (726)
+|++........ ...+++++-+|.| .-.+++
T Consensus 104 ~a~ae~~~~~~~---~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAAK---DCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTTT---TTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCccC---CcceEEEEEeecC-CCccee
Confidence 998876543221 3567888889876 455554
No 243
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.58 E-value=3.8e+02 Score=22.42 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=29.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 004867 646 QDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKK 689 (726)
Q Consensus 646 ~~~~~~~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~ 689 (726)
..-++++.|..+.+.+..+.+-|.. |+++|+.|+.
T Consensus 30 ~~eLs~e~R~~lE~E~~~l~~~l~~---------~E~eL~~Lrk 64 (85)
T PF15188_consen 30 RRELSPEARRSLEKELNELKEKLEN---------NEKELKLLRK 64 (85)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhhc---------cHHHHHHHHH
Confidence 4678999999999999998888865 3678888876
No 244
>PTZ00107 hexokinase; Provisional
Probab=23.33 E-value=2.9e+02 Score=31.12 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=22.1
Q ss_pred CCceEEEEEeCCceeEEEEEEeeCC
Q 004867 192 DQLNVAFVDIGHASLQVCIAGFKKG 216 (726)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~~~ 216 (726)
+...+|.+|+||.++-|.+|++.++
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 3567999999999999999999865
No 245
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=22.78 E-value=63 Score=29.86 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=47.8
Q ss_pred CcceEEEeCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCCCCCCCCchhhhh
Q 004867 291 EKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVA 370 (726)
Q Consensus 291 ~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eaVa 370 (726)
..++++-|-..+|.+ .+.+++.+-..+.|...|...++++ |+-|=|+--+|+.-+.+.+. -+.|-.|+
T Consensus 5 ~~~~ri~IV~s~fn~---~I~~~Ll~ga~~~l~~~gv~~~~i~-v~~VPGa~EiP~a~~~l~~s--------~~~DavIa 72 (141)
T PLN02404 5 GEGLRFGVVVARFNE---IITKNLLEGALETFKRYSVKEENID-VVWVPGSFEIPVVAQRLAKS--------GKYDAILC 72 (141)
T ss_pred CCCCEEEEEEecCcH---HHHHHHHHHHHHHHHHcCCCccceE-EEEcCcHHHHHHHHHHHHhc--------CCCCEEEE
Confidence 334455454555554 4556666666677778887766665 56888999999998877542 13455566
Q ss_pred cchHHHH
Q 004867 371 RGCALQC 377 (726)
Q Consensus 371 ~GAa~~a 377 (726)
+||.+.+
T Consensus 73 LG~VIrG 79 (141)
T PLN02404 73 IGAVIRG 79 (141)
T ss_pred EEEEEeC
Confidence 6665544
No 246
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=21.87 E-value=1.9e+02 Score=31.89 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=34.3
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCC-ChHHHHHHHHHHcC
Q 004867 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFG 356 (726)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg 356 (726)
.++-++.++.+.|-...... ...+|.|+++||-+ ..+.|++.|.+.++
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33445555555555544443 13699999999999 99999999998764
No 247
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=21.82 E-value=77 Score=35.82 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=15.9
Q ss_pred EEEEEcCccceEEEEEE
Q 004867 3 VVGFDLGNESCIVAVAR 19 (726)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (726)
++|||.|||.+++++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 79999999999999987
No 248
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=21.82 E-value=4.6e+02 Score=23.21 Aligned_cols=83 Identities=14% Similarity=0.226 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCcccEEeccccCCcceEEEeCHHHHHHHHh---HHHHHHHH
Q 004867 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISA---PILERVKR 316 (726)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~---~~~~~i~~ 316 (726)
.++-.-|.+.++..+ .......+|.++++.....++..... ++ ..|.+.++.++|+.+.. .+..++..
T Consensus 10 ~~v~g~Far~F~~~v-qPvEIa~~L~remd~~a~~~~~~r~~---aP-----N~y~V~Ls~~D~~~l~~~~~~l~~el~~ 80 (116)
T PF12401_consen 10 RAVEGAFARVFRSEV-QPVEIAKALRREMDDQARVVSRGRTL---AP-----NVYTVELSPEDYERLSPWGDRLARELAD 80 (116)
T ss_dssp S--STHHHHHHTTSS--THHHHHHHHHHHHHT-B---TT--B-----------EEEEEEEHHHHHHH-S-SHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhCCeecCCCCEE---cC-----eeEEEEECHHHHHHHhhhHHHHHHHHHH
Confidence 333333444444332 22344556777777765555544321 22 35788999999999987 67788888
Q ss_pred HHHHHHHHcCCCCCC
Q 004867 317 PLEKALAETGLSVED 331 (726)
Q Consensus 317 ~i~~~l~~~~~~~~~ 331 (726)
.+.+.....|.....
T Consensus 81 ~l~~~a~~qgy~~~G 95 (116)
T PF12401_consen 81 YLAEHAREQGYTFVG 95 (116)
T ss_dssp HHHHHHHHHT-B-SS
T ss_pred HHHHHHHHCCCeecC
Confidence 888888877766433
No 249
>PLN02192 3-ketoacyl-CoA synthase
Probab=21.62 E-value=2.2e+02 Score=32.43 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=41.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcC-CCChHHHHHHHHHHcCCC
Q 004867 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGS-SSRVPAIIKILTEFFGKE 358 (726)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG-~srip~v~~~l~~~fg~~ 358 (726)
+++..++...-+...++++|+++|+++.+||.|+.... ....|.+-.+|.+.+|.+
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 34444444455667788899999999999998876532 235899999999999854
No 250
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.54 E-value=3.5e+02 Score=21.20 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=32.0
Q ss_pred HHHhhHHHhhHHHHHHHHHHHhh-hhhccCCCHHHHHHHHHHHHHHHHHh
Q 004867 620 MEETKDRKNAVEAYVYDMRNKLC-DKYQDFVTDSERELFTSKLQETEDWL 668 (726)
Q Consensus 620 ~~~~~~akN~LEs~iy~~r~~l~-~~~~~~~~~~e~~~i~~~l~~~~~WL 668 (726)
+.++......++..|-.+..+|. +.|....+++-.+.-...+.++..=+
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~ 55 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEEL 55 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 34445556677777777888886 46777777777777666666655433
No 251
>PLN02914 hexokinase
Probab=21.46 E-value=2.2e+02 Score=32.30 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=21.5
Q ss_pred CceEEEEEeCCceeEEEEEEeeCC
Q 004867 193 QLNVAFVDIGHASLQVCIAGFKKG 216 (726)
Q Consensus 193 ~~~vlv~D~Gggt~dvsvv~~~~~ 216 (726)
...+|.+|+||.++-|..+++.++
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~ 117 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQLGGK 117 (490)
T ss_pred eeEEEEEecCCceEEEEEEEecCC
Confidence 567999999999999999999863
No 252
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.34 E-value=7e+02 Score=29.65 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHhhhHHH
Q 004867 652 SERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIE 695 (726)
Q Consensus 652 ~e~~~i~~~l~~~~~WL~~~~~~a~~~~~~~kl~~L~~~~~~i~ 695 (726)
..|+++...-++-.+|+-- .++-+..++..|+.|+...+.+.
T Consensus 416 ar~qem~~Qk~reqe~iv~--~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 416 ARRQEMLNQKNREQEWIVY--LNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555666666532 12333333444444443333333
No 253
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=21.29 E-value=47 Score=37.27 Aligned_cols=17 Identities=41% Similarity=0.432 Sum_probs=14.9
Q ss_pred EEEEcCccceEEEEEEC
Q 004867 4 VGFDLGNESCIVAVARQ 20 (726)
Q Consensus 4 vGID~GTt~s~va~~~~ 20 (726)
+|||+|||+++++++..
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998764
No 254
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=21.23 E-value=6e+02 Score=24.50 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=14.6
Q ss_pred hHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q 004867 692 DPIEERYKEFTDRSSVIDQLAYCINSYRE 720 (726)
Q Consensus 692 ~~i~~R~~e~~~rp~~~~~~~~~~~~~~~ 720 (726)
+.+.+|-.-.+.+.+.-+.+.+.++..++
T Consensus 102 e~~en~K~~~e~tEer~~el~kklnslkk 130 (203)
T KOG3433|consen 102 ESIENRKAGREETEERTDELTKKLNSLKK 130 (203)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 34555555455555544455555555544
No 255
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=21.09 E-value=1.1e+02 Score=34.08 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=16.0
Q ss_pred CceEEEEEeCCceeEEEEEEe
Q 004867 193 QLNVAFVDIGHASLQVCIAGF 213 (726)
Q Consensus 193 ~~~vlv~D~Gggt~dvsvv~~ 213 (726)
..++-++||||+++.++..--
T Consensus 163 ~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 163 SNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp SS-EEEEEE-SSEEEEEEEET
T ss_pred CceEEEEecCCcceeeeeccC
Confidence 578999999999999996543
No 256
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=20.95 E-value=54 Score=37.01 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=15.6
Q ss_pred EEEEcCccceEEEEEECC
Q 004867 4 VGFDLGNESCIVAVARQR 21 (726)
Q Consensus 4 vGID~GTt~s~va~~~~~ 21 (726)
||||+||+++++++++..
T Consensus 1 lgIDiGtt~ik~~l~d~~ 18 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQ 18 (481)
T ss_pred CceeecCcceEEEEECCC
Confidence 699999999999988643
No 257
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.84 E-value=92 Score=33.86 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcC
Q 004867 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG 356 (726)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg 356 (726)
++.....+...|+++|+++++++.+|+.+++.+++.++-- ..+++.||
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~d--~~~~~llg 313 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMNQ--LIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHH--HHHHHhcc
Confidence 3455666778899999999999999999999999977532 23444465
No 258
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=2.1e+02 Score=30.53 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=38.8
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHH
Q 004867 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIK 349 (726)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~ 349 (726)
..+...+.+..+|+++|++++++..+||.|-.+=|-+.++.+.-
T Consensus 46 Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~V 89 (342)
T COG0533 46 ASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLV 89 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHH
Confidence 44577889999999999999999999999999999988888754
No 259
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=20.63 E-value=2.6e+02 Score=23.29 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=17.6
Q ss_pred eEEEEEeCCceeEEEEEEeeCC
Q 004867 195 NVAFVDIGHASLQVCIAGFKKG 216 (726)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~ 216 (726)
.+|-+|+||..+-++++.-.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC
Confidence 4789999999999998865543
No 260
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.62 E-value=2.1e+02 Score=30.25 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCccEEEEEcCCCChHHHHHHHHHHcCCC
Q 004867 308 APILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE 358 (726)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~ 358 (726)
...+..+...++++|+++++++.+|+.+++..++ +.+.+.+.+.+|.+
T Consensus 221 ~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~~ 268 (325)
T PRK12879 221 KWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGIP 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCCC
Confidence 3345667788999999999999999999998776 44456777887743
No 261
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.52 E-value=1.3e+03 Score=26.53 Aligned_cols=130 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhH---------HHHHHHHHHHhhhhhc--------cCCCHHHHHHHHH
Q 004867 597 GMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAV---------EAYVYDMRNKLCDKYQ--------DFVTDSERELFTS 659 (726)
Q Consensus 597 ~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~L---------Es~iy~~r~~l~~~~~--------~~~~~~e~~~i~~ 659 (726)
.+.+.|.+++.++-..+...++......+|...| -+.||.....|.+--. ...-++--..+.+
T Consensus 201 ~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~e 280 (557)
T COG0497 201 NLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEE 280 (557)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhh-cCCCcchHHHHHHHHHHHH--------------hhhHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhc
Q 004867 660 KLQETEDWLYE-DGEDETKGVYVAKLEELKK--------------QGDPIEERYKEFTDRSSVIDQLAYCINSYREAALS 724 (726)
Q Consensus 660 ~l~~~~~WL~~-~~~~a~~~~~~~kl~~L~~--------------~~~~i~~R~~e~~~rp~~~~~~~~~~~~~~~~~~~ 724 (726)
...++...+++ +-+....+.+++||..|+. ....+..++.........+..|.+.++.++..+..
T Consensus 281 a~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~ 360 (557)
T COG0497 281 ASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLE 360 (557)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred cC
Q 004867 725 MC 726 (726)
Q Consensus 725 ~~ 726 (726)
.|
T Consensus 361 ~A 362 (557)
T COG0497 361 AA 362 (557)
T ss_pred HH
No 262
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=20.23 E-value=7.5e+02 Score=31.24 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHhhHHHhhHHHHHHHHHHHh
Q 004867 597 GMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKL 641 (726)
Q Consensus 597 ~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l 641 (726)
.+++.++.++..........+..+....+-...++..++.++..|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql 195 (1179)
T TIGR02168 151 EAKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDIL 195 (1179)
T ss_pred cCCHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666655554444444444444444444555555544
No 263
>PLN02362 hexokinase
Probab=20.21 E-value=2.8e+02 Score=31.60 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=22.1
Q ss_pred CCceEEEEEeCCceeEEEEEEeeCC
Q 004867 192 DQLNVAFVDIGHASLQVCIAGFKKG 216 (726)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~~~ 216 (726)
+...+|.+|+||.++-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCC
Confidence 3567999999999999999999864
Done!