Query 004872
Match_columns 726
No_of_seqs 559 out of 3234
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 14:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 1.3E-73 2.9E-78 641.9 47.6 561 2-622 232-839 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 1.3E-27 2.7E-32 260.4 24.4 216 380-609 168-419 (421)
3 COG5038 Ca2+-dependent lipid-b 99.9 8.1E-24 1.8E-28 240.5 30.1 432 145-622 655-1160(1227)
4 KOG1028 Ca2+-dependent phospho 99.9 1.3E-25 2.9E-30 244.6 13.4 214 481-712 152-393 (421)
5 KOG2059 Ras GTPase-activating 99.9 6.9E-23 1.5E-27 221.3 15.3 230 380-622 6-275 (800)
6 cd04016 C2_Tollip C2 domain pr 99.9 1.5E-21 3.2E-26 176.1 15.1 113 509-622 1-121 (121)
7 cd08677 C2A_Synaptotagmin-13 C 99.9 7.7E-21 1.7E-25 168.5 13.5 109 483-608 1-118 (118)
8 cd08682 C2_Rab11-FIP_classI C2 99.8 3.1E-20 6.6E-25 170.5 13.7 110 512-621 1-126 (126)
9 cd08381 C2B_PI3K_class_II C2 d 99.8 5.2E-20 1.1E-24 167.6 14.3 111 482-609 1-122 (122)
10 cd08393 C2A_SLP-1_2 C2 domain 99.8 4.6E-20 1E-24 168.8 14.0 114 482-609 1-125 (125)
11 cd04029 C2A_SLP-4_5 C2 domain 99.8 8.3E-20 1.8E-24 166.9 15.4 114 482-609 1-125 (125)
12 cd08375 C2_Intersectin C2 doma 99.8 1.9E-19 4.1E-24 166.9 15.7 119 504-622 9-135 (136)
13 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.8E-19 6.1E-24 162.9 15.9 112 511-622 1-119 (121)
14 cd08376 C2B_MCTP_PRT C2 domain 99.8 4.9E-19 1.1E-23 160.1 15.7 110 512-622 2-114 (116)
15 cd08379 C2D_MCTP_PRT_plant C2 99.8 2.7E-19 5.8E-24 162.5 13.8 107 512-618 2-125 (126)
16 cd08392 C2A_SLP-3 C2 domain fi 99.8 3.8E-19 8.3E-24 162.9 14.8 114 482-609 1-128 (128)
17 cd04028 C2B_RIM1alpha C2 domai 99.8 3.6E-19 7.8E-24 165.4 14.5 119 477-611 12-139 (146)
18 KOG2059 Ras GTPase-activating 99.8 2.4E-19 5.2E-24 194.1 15.3 238 186-493 5-277 (800)
19 cd04016 C2_Tollip C2 domain pr 99.8 3.8E-19 8.1E-24 160.5 13.9 112 379-491 2-121 (121)
20 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.1E-19 8.9E-24 163.3 14.5 112 511-622 1-125 (127)
21 cd08387 C2A_Synaptotagmin-8 C2 99.8 6.8E-19 1.5E-23 161.2 15.3 114 482-609 2-123 (124)
22 cd08681 C2_fungal_Inn1p-like C 99.8 3.5E-19 7.6E-24 161.6 12.4 112 510-622 1-118 (118)
23 cd04036 C2_cPLA2 C2 domain pre 99.8 8.2E-19 1.8E-23 159.4 14.4 110 512-622 2-117 (119)
24 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.4E-18 3E-23 157.9 14.9 111 512-622 2-121 (121)
25 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.2E-18 2.7E-23 163.9 14.6 112 511-622 1-131 (150)
26 cd08385 C2A_Synaptotagmin-1-5- 99.8 2E-18 4.3E-23 158.1 15.5 114 482-609 2-123 (124)
27 cd08388 C2A_Synaptotagmin-4-11 99.8 2.7E-18 5.8E-23 157.7 16.2 114 482-609 2-127 (128)
28 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.4E-18 3E-23 158.4 14.0 112 510-622 1-121 (121)
29 cd08389 C2A_Synaptotagmin-14_1 99.8 2.2E-18 4.8E-23 157.4 14.5 114 482-610 2-124 (124)
30 cd08386 C2A_Synaptotagmin-7 C2 99.8 3.1E-18 6.7E-23 157.0 15.2 114 482-609 2-124 (125)
31 cd04024 C2A_Synaptotagmin-like 99.8 2E-18 4.4E-23 159.0 13.9 113 510-622 1-128 (128)
32 cd08680 C2_Kibra C2 domain fou 99.8 1.8E-18 4E-23 157.0 13.2 111 484-608 2-124 (124)
33 cd04017 C2D_Ferlin C2 domain f 99.8 3.4E-18 7.5E-23 158.8 14.9 115 510-625 1-133 (135)
34 cd04031 C2A_RIM1alpha C2 domai 99.8 2.7E-18 5.9E-23 157.4 14.1 113 482-609 2-125 (125)
35 KOG1030 Predicted Ca2+-depende 99.8 7.9E-19 1.7E-23 161.2 10.3 94 508-601 4-99 (168)
36 cd08407 C2B_Synaptotagmin-13 C 99.8 3.2E-18 6.9E-23 158.0 14.3 100 482-595 1-112 (138)
37 cd08395 C2C_Munc13 C2 domain t 99.8 1.8E-18 4E-23 155.6 12.4 99 511-610 1-112 (120)
38 cd04030 C2C_KIAA1228 C2 domain 99.8 5.2E-18 1.1E-22 156.0 15.2 114 482-609 2-127 (127)
39 cd08685 C2_RGS-like C2 domain 99.8 3.1E-18 6.7E-23 155.0 12.9 109 483-608 1-119 (119)
40 cd08521 C2A_SLP C2 domain firs 99.8 4.8E-18 1E-22 155.3 14.3 112 483-608 1-123 (123)
41 cd08678 C2_C21orf25-like C2 do 99.8 8.2E-18 1.8E-22 154.3 15.4 109 512-622 1-119 (126)
42 cd08406 C2B_Synaptotagmin-12 C 99.8 4.8E-18 1E-22 157.0 13.8 99 483-595 2-110 (136)
43 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.4E-17 3E-22 152.7 16.0 110 509-622 3-122 (126)
44 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.4E-18 2E-22 153.4 14.4 110 511-620 1-122 (123)
45 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 8.8E-18 1.9E-22 155.8 14.2 112 511-622 1-132 (133)
46 cd08390 C2A_Synaptotagmin-15-1 99.8 1.7E-17 3.6E-22 151.7 15.6 113 483-609 1-122 (123)
47 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 9.9E-18 2.1E-22 160.0 14.1 127 482-610 1-138 (162)
48 cd08377 C2C_MCTP_PRT C2 domain 99.8 2E-17 4.3E-22 150.3 15.3 111 510-622 1-118 (119)
49 cd04015 C2_plant_PLD C2 domain 99.8 2.5E-17 5.4E-22 156.6 16.2 113 509-622 6-157 (158)
50 cd08682 C2_Rab11-FIP_classI C2 99.8 7.9E-18 1.7E-22 154.5 12.3 110 381-490 1-126 (126)
51 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.3E-17 2.7E-22 151.6 13.3 107 511-622 1-119 (121)
52 cd08379 C2D_MCTP_PRT_plant C2 99.7 1.5E-17 3.3E-22 151.0 13.6 100 380-479 1-111 (126)
53 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.6E-17 5.6E-22 149.8 14.5 110 512-621 2-120 (121)
54 KOG1030 Predicted Ca2+-depende 99.7 5.1E-18 1.1E-22 155.9 9.6 92 184-298 4-96 (168)
55 cd04014 C2_PKC_epsilon C2 doma 99.7 5.5E-17 1.2E-21 150.2 15.7 112 509-622 3-128 (132)
56 cd04010 C2B_RasA3 C2 domain se 99.7 1.5E-17 3.2E-22 155.7 11.8 98 511-610 1-122 (148)
57 cd08376 C2B_MCTP_PRT C2 domain 99.7 5.1E-17 1.1E-21 146.9 14.8 112 380-492 1-115 (116)
58 cd04042 C2A_MCTP_PRT C2 domain 99.7 4.5E-17 9.7E-22 148.4 14.2 112 381-492 2-120 (121)
59 cd08681 C2_fungal_Inn1p-like C 99.7 2.4E-17 5.2E-22 149.5 12.2 113 379-491 1-118 (118)
60 cd08391 C2A_C2C_Synaptotagmin_ 99.7 4.7E-17 1E-21 148.3 13.4 113 379-491 1-121 (121)
61 cd08692 C2B_Tac2-N C2 domain s 99.7 5.2E-17 1.1E-21 147.7 13.4 99 483-595 1-109 (135)
62 cd08688 C2_KIAA0528-like C2 do 99.7 3.4E-17 7.4E-22 146.4 11.8 99 512-610 1-109 (110)
63 cd04044 C2A_Tricalbin-like C2 99.7 7.8E-17 1.7E-21 147.5 14.5 116 509-625 1-124 (124)
64 cd08402 C2B_Synaptotagmin-1 C2 99.7 8.2E-17 1.8E-21 149.8 14.5 112 482-609 1-122 (136)
65 cd04050 C2B_Synaptotagmin-like 99.7 4.9E-17 1.1E-21 144.1 11.5 98 511-611 1-103 (105)
66 cd08375 C2_Intersectin C2 doma 99.7 1.2E-16 2.7E-21 148.0 14.7 113 379-491 15-135 (136)
67 cd08373 C2A_Ferlin C2 domain f 99.7 1.5E-16 3.2E-21 146.3 15.1 109 516-627 2-119 (127)
68 cd08410 C2B_Synaptotagmin-17 C 99.7 9.1E-17 2E-21 149.1 13.8 112 483-609 1-122 (135)
69 cd04018 C2C_Ferlin C2 domain t 99.7 5.5E-17 1.2E-21 152.1 12.3 105 511-615 1-130 (151)
70 cd08405 C2B_Synaptotagmin-7 C2 99.7 1.1E-16 2.4E-21 149.0 13.9 111 482-608 1-121 (136)
71 cd08408 C2B_Synaptotagmin-14_1 99.7 1.2E-16 2.6E-21 148.4 14.1 100 483-596 2-112 (138)
72 cd08404 C2B_Synaptotagmin-4 C2 99.7 3.8E-17 8.1E-22 152.1 10.6 113 482-610 1-123 (136)
73 cd04043 C2_Munc13_fungal C2 do 99.7 1.8E-16 3.9E-21 145.6 14.7 110 511-622 2-120 (126)
74 cd04024 C2A_Synaptotagmin-like 99.7 1.4E-16 3E-21 146.7 13.3 113 379-491 1-128 (128)
75 cd04019 C2C_MCTP_PRT_plant C2 99.7 1.6E-16 3.5E-21 149.5 13.8 112 381-492 2-132 (150)
76 cd04036 C2_cPLA2 C2 domain pre 99.7 1.9E-16 4.1E-21 143.8 13.8 111 381-491 2-117 (119)
77 cd04039 C2_PSD C2 domain prese 99.7 9E-17 2E-21 142.7 11.3 96 186-300 1-99 (108)
78 cd08409 C2B_Synaptotagmin-15 C 99.7 5.9E-17 1.3E-21 150.6 10.5 111 483-608 2-122 (137)
79 cd04026 C2_PKC_alpha_gamma C2 99.7 1.7E-16 3.7E-21 146.8 13.5 118 482-616 1-127 (131)
80 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.7E-16 3.6E-21 144.2 13.0 110 381-490 2-120 (121)
81 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.4E-16 3E-21 146.5 12.6 112 381-492 2-126 (127)
82 cd08382 C2_Smurf-like C2 domai 99.7 1.7E-16 3.6E-21 144.9 13.0 109 512-620 2-122 (123)
83 cd04039 C2_PSD C2 domain prese 99.7 1.3E-16 2.8E-21 141.7 11.7 91 510-600 1-99 (108)
84 cd08403 C2B_Synaptotagmin-3-5- 99.7 2.5E-16 5.5E-21 146.1 14.1 110 483-608 1-120 (134)
85 cd04027 C2B_Munc13 C2 domain s 99.7 3.3E-16 7.2E-21 143.8 14.1 108 511-620 2-127 (127)
86 cd04046 C2_Calpain C2 domain p 99.7 5.3E-16 1.2E-20 142.2 15.3 111 509-622 2-121 (126)
87 cd04041 C2A_fungal C2 domain f 99.7 1.1E-16 2.3E-21 143.5 10.3 97 510-609 1-107 (111)
88 cd08690 C2_Freud-1 C2 domain f 99.7 4.9E-16 1.1E-20 145.5 15.1 118 510-627 4-141 (155)
89 cd08384 C2B_Rabphilin_Doc2 C2 99.7 3.7E-16 8E-21 144.9 14.0 111 484-610 1-121 (133)
90 cd04009 C2B_Munc13-like C2 dom 99.7 2.2E-16 4.8E-21 146.2 12.4 103 482-598 2-118 (133)
91 cd04011 C2B_Ferlin C2 domain s 99.7 3.2E-16 6.9E-21 140.4 12.9 99 508-610 2-110 (111)
92 cd08394 C2A_Munc13 C2 domain f 99.7 4.6E-16 1E-20 139.4 13.4 103 510-617 2-111 (127)
93 cd04015 C2_plant_PLD C2 domain 99.7 4.8E-16 1E-20 147.9 14.1 114 379-492 7-158 (158)
94 cd08381 C2B_PI3K_class_II C2 d 99.7 5.2E-16 1.1E-20 141.2 13.6 97 380-477 14-121 (122)
95 cd08678 C2_C21orf25-like C2 do 99.7 5.9E-16 1.3E-20 142.0 13.3 112 381-494 1-122 (126)
96 cd04028 C2B_RIM1alpha C2 domai 99.7 1.2E-15 2.5E-20 142.0 15.3 101 380-480 30-139 (146)
97 cd08393 C2A_SLP-1_2 C2 domain 99.7 5.7E-16 1.2E-20 141.7 12.9 99 380-478 16-125 (125)
98 cd00276 C2B_Synaptotagmin C2 d 99.7 3.1E-16 6.8E-21 145.6 10.9 115 483-613 1-125 (134)
99 cd08378 C2B_MCTP_PRT_plant C2 99.7 6.7E-16 1.5E-20 140.3 12.4 107 381-491 2-119 (121)
100 cd04044 C2A_Tricalbin-like C2 99.7 9.6E-16 2.1E-20 140.3 13.4 93 185-300 1-97 (124)
101 cd04050 C2B_Synaptotagmin-like 99.7 7.3E-16 1.6E-20 136.6 12.1 98 381-480 2-103 (105)
102 cd04041 C2A_fungal C2 domain f 99.7 4.3E-16 9.3E-21 139.5 10.8 92 186-300 1-101 (111)
103 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.5E-15 3.2E-20 139.2 14.5 111 380-493 5-124 (126)
104 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.2E-15 2.6E-20 139.6 13.8 100 379-478 16-123 (124)
105 cd04049 C2_putative_Elicitor-r 99.7 5.9E-16 1.3E-20 141.7 11.6 102 510-611 1-109 (124)
106 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.3E-15 2.8E-20 139.3 13.7 100 379-478 15-125 (125)
107 cd04035 C2A_Rabphilin_Doc2 C2 99.7 2.1E-15 4.5E-20 137.8 15.0 111 483-608 2-123 (123)
108 cd04038 C2_ArfGAP C2 domain pr 99.7 1.5E-15 3.2E-20 141.8 14.0 89 510-599 2-92 (145)
109 cd04051 C2_SRC2_like C2 domain 99.7 7.1E-16 1.5E-20 141.4 11.2 108 511-618 1-125 (125)
110 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1.3E-15 2.7E-20 138.7 12.6 110 381-490 2-120 (121)
111 cd08395 C2C_Munc13 C2 domain t 99.6 1.2E-15 2.6E-20 137.4 12.2 99 381-480 2-113 (120)
112 cd08677 C2A_Synaptotagmin-13 C 99.6 1.4E-15 3.1E-20 135.0 12.2 96 379-477 14-118 (118)
113 cd04045 C2C_Tricalbin-like C2 99.6 2.3E-15 5E-20 136.6 13.6 107 510-617 1-110 (120)
114 KOG0696 Serine/threonine prote 99.6 9.4E-17 2E-21 165.0 4.9 117 482-615 168-293 (683)
115 cd08392 C2A_SLP-3 C2 domain fi 99.6 2.4E-15 5.3E-20 137.7 13.7 99 380-478 16-128 (128)
116 cd08377 C2C_MCTP_PRT C2 domain 99.6 3.3E-15 7.1E-20 135.7 14.4 111 379-491 1-118 (119)
117 cd08676 C2A_Munc13-like C2 dom 99.6 1.3E-15 2.8E-20 143.0 11.9 100 504-608 22-153 (153)
118 cd04038 C2_ArfGAP C2 domain pr 99.6 3.3E-15 7.2E-20 139.4 14.5 93 185-301 1-94 (145)
119 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1.6E-15 3.4E-20 140.7 12.2 111 381-491 2-132 (133)
120 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 2.4E-15 5.3E-20 137.4 13.2 99 381-479 2-103 (123)
121 cd04032 C2_Perforin C2 domain 99.6 2.1E-15 4.6E-20 137.2 12.1 93 505-598 23-119 (127)
122 cd08685 C2_RGS-like C2 domain 99.6 2.6E-15 5.6E-20 135.9 12.6 98 379-477 12-119 (119)
123 cd08385 C2A_Synaptotagmin-1-5- 99.6 5.1E-15 1.1E-19 135.5 14.6 99 380-478 17-123 (124)
124 cd04052 C2B_Tricalbin-like C2 99.6 2.2E-15 4.7E-20 134.9 11.7 98 526-625 8-110 (111)
125 cd04014 C2_PKC_epsilon C2 doma 99.6 4.2E-15 9E-20 137.6 13.9 111 379-492 4-129 (132)
126 cd08675 C2B_RasGAP C2 domain s 99.6 2.1E-15 4.5E-20 140.1 11.7 99 512-611 1-121 (137)
127 cd04031 C2A_RIM1alpha C2 domai 99.6 5E-15 1.1E-19 135.7 13.8 99 379-478 16-125 (125)
128 cd04017 C2D_Ferlin C2 domain f 99.6 6.6E-15 1.4E-19 136.7 14.5 115 380-494 2-134 (135)
129 cd08691 C2_NEDL1-like C2 domai 99.6 7.9E-15 1.7E-19 135.4 14.7 109 511-620 2-136 (137)
130 cd04040 C2D_Tricalbin-like C2 99.6 4.8E-15 1E-19 133.7 13.0 106 512-617 1-113 (115)
131 cd04010 C2B_RasA3 C2 domain se 99.6 3.7E-15 7.9E-20 139.5 11.7 98 381-480 2-123 (148)
132 cd04046 C2_Calpain C2 domain p 99.6 1.3E-14 2.7E-19 133.1 15.0 111 380-492 4-122 (126)
133 cd08388 C2A_Synaptotagmin-4-11 99.6 1.4E-14 3.1E-19 133.0 15.4 99 380-478 17-127 (128)
134 cd04021 C2_E3_ubiquitin_ligase 99.6 1E-14 2.3E-19 133.4 13.8 110 510-620 2-124 (125)
135 cd04032 C2_Perforin C2 domain 99.6 4.2E-15 9.2E-20 135.2 11.0 91 183-297 25-118 (127)
136 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.1E-14 2.4E-19 139.0 14.3 104 377-480 25-139 (162)
137 cd08389 C2A_Synaptotagmin-14_1 99.6 9.9E-15 2.1E-19 133.3 13.3 99 380-479 17-124 (124)
138 cd04045 C2C_Tricalbin-like C2 99.6 5.9E-15 1.3E-19 133.9 11.7 91 186-299 1-93 (120)
139 cd08394 C2A_Munc13 C2 domain f 99.6 8.7E-15 1.9E-19 131.2 12.2 97 379-479 2-101 (127)
140 cd04030 C2C_KIAA1228 C2 domain 99.6 1.5E-14 3.2E-19 133.0 14.0 100 379-478 16-127 (127)
141 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.6E-14 3.4E-19 132.4 14.0 100 380-479 17-125 (125)
142 cd08680 C2_Kibra C2 domain fou 99.6 6.4E-15 1.4E-19 133.8 11.0 99 379-477 14-124 (124)
143 cd08688 C2_KIAA0528-like C2 do 99.6 6.6E-15 1.4E-19 131.6 10.9 99 381-479 1-109 (110)
144 cd04027 C2B_Munc13 C2 domain s 99.6 1.4E-14 3E-19 133.0 12.9 108 380-489 2-127 (127)
145 cd04013 C2_SynGAP_like C2 doma 99.6 3.1E-14 6.7E-19 132.0 15.1 109 509-622 10-138 (146)
146 cd08676 C2A_Munc13-like C2 dom 99.6 4.8E-15 1E-19 139.1 9.7 105 166-297 2-143 (153)
147 cd04037 C2E_Ferlin C2 domain f 99.6 1E-14 2.2E-19 133.3 11.4 111 511-622 1-118 (124)
148 cd04043 C2_Munc13_fungal C2 do 99.6 2.7E-14 6E-19 131.0 14.3 111 380-492 2-121 (126)
149 KOG1326 Membrane-associated pr 99.6 4.8E-15 1E-19 166.5 10.9 358 186-594 206-702 (1105)
150 cd08373 C2A_Ferlin C2 domain f 99.6 2.7E-14 5.9E-19 131.2 13.8 110 385-496 2-120 (127)
151 cd08521 C2A_SLP C2 domain firs 99.6 3E-14 6.6E-19 130.1 13.8 99 379-477 14-123 (123)
152 cd08383 C2A_RasGAP C2 domain ( 99.6 4.1E-14 8.8E-19 128.0 14.4 105 512-622 2-117 (117)
153 cd08382 C2_Smurf-like C2 domai 99.6 2E-14 4.3E-19 131.2 12.3 108 381-489 2-122 (123)
154 cd04018 C2C_Ferlin C2 domain t 99.6 1.4E-14 3E-19 135.9 11.2 104 381-484 2-130 (151)
155 cd08390 C2A_Synaptotagmin-15-1 99.6 4.4E-14 9.5E-19 129.1 13.8 101 379-479 14-123 (123)
156 PLN03008 Phospholipase D delta 99.6 2.2E-14 4.8E-19 162.3 14.2 98 529-628 75-181 (868)
157 cd04048 C2A_Copine C2 domain f 99.6 2E-14 4.4E-19 130.6 11.2 95 515-609 5-113 (120)
158 KOG1013 Synaptic vesicle prote 99.5 2.8E-15 6.1E-20 150.2 4.9 201 380-594 94-327 (362)
159 cd04037 C2E_Ferlin C2 domain f 99.5 3.3E-14 7.2E-19 129.9 11.5 88 187-297 1-92 (124)
160 cd08686 C2_ABR C2 domain in th 99.5 8E-14 1.7E-18 123.3 13.3 94 512-610 1-109 (118)
161 cd04049 C2_putative_Elicitor-r 99.5 8E-14 1.7E-18 127.5 13.0 102 379-480 1-109 (124)
162 cd04011 C2B_Ferlin C2 domain s 99.5 5.3E-14 1.1E-18 126.0 11.4 97 379-479 4-110 (111)
163 cd08691 C2_NEDL1-like C2 domai 99.5 1.5E-13 3.3E-18 126.9 14.4 89 187-300 2-108 (137)
164 cd04052 C2B_Tricalbin-like C2 99.5 4.2E-14 9.2E-19 126.6 10.4 99 396-494 9-111 (111)
165 cd04009 C2B_Munc13-like C2 dom 99.5 4.5E-14 9.8E-19 130.7 10.9 92 184-298 14-118 (133)
166 cd04026 C2_PKC_alpha_gamma C2 99.5 9E-14 2E-18 128.5 12.8 107 379-486 13-128 (131)
167 cd04013 C2_SynGAP_like C2 doma 99.5 1.5E-13 3.2E-18 127.6 13.7 112 379-495 11-142 (146)
168 cd04051 C2_SRC2_like C2 domain 99.5 5.5E-14 1.2E-18 128.8 10.5 107 380-486 1-124 (125)
169 cd08686 C2_ABR C2 domain in th 99.5 6.3E-14 1.4E-18 124.0 10.4 78 188-294 1-91 (118)
170 cd08690 C2_Freud-1 C2 domain f 99.5 3.4E-13 7.4E-18 126.4 14.5 113 381-493 4-138 (155)
171 cd08384 C2B_Rabphilin_Doc2 C2 99.5 9.7E-14 2.1E-18 128.6 10.5 90 183-295 10-108 (133)
172 cd04040 C2D_Tricalbin-like C2 99.5 2.2E-13 4.8E-18 122.8 12.3 100 381-480 1-104 (115)
173 KOG0696 Serine/threonine prote 99.5 2.3E-14 5E-19 147.6 6.5 104 380-484 181-293 (683)
174 cd08406 C2B_Synaptotagmin-12 C 99.5 1.1E-13 2.4E-18 127.9 10.4 98 380-479 16-123 (136)
175 cd08407 C2B_Synaptotagmin-13 C 99.5 9.8E-14 2.1E-18 128.2 9.8 97 379-477 15-123 (138)
176 cd00275 C2_PLC_like C2 domain 99.5 3.8E-13 8.2E-18 123.8 13.7 109 510-622 2-127 (128)
177 cd08675 C2B_RasGAP C2 domain s 99.5 1.4E-13 3E-18 127.9 10.7 100 381-481 1-122 (137)
178 cd08383 C2A_RasGAP C2 domain ( 99.5 5.3E-13 1.1E-17 120.7 13.0 105 381-491 2-117 (117)
179 cd08408 C2B_Synaptotagmin-14_1 99.5 1.8E-13 3.8E-18 127.2 9.9 92 182-296 11-112 (138)
180 cd08402 C2B_Synaptotagmin-1 C2 99.5 2.2E-13 4.9E-18 126.7 10.1 92 182-296 11-111 (136)
181 cd08404 C2B_Synaptotagmin-4 C2 99.5 2.3E-13 5E-18 126.6 10.0 90 183-295 12-110 (136)
182 PLN03008 Phospholipase D delta 99.5 3.7E-13 8.1E-18 152.5 13.5 99 398-496 75-181 (868)
183 cd08405 C2B_Synaptotagmin-7 C2 99.5 2.2E-13 4.8E-18 126.7 9.8 91 183-296 12-111 (136)
184 cd08410 C2B_Synaptotagmin-17 C 99.5 3.1E-13 6.6E-18 125.4 10.5 88 183-293 11-107 (135)
185 cd04047 C2B_Copine C2 domain s 99.5 3.6E-13 7.9E-18 120.4 10.6 86 513-599 3-101 (110)
186 PLN03200 cellulose synthase-in 99.5 1.6E-13 3.4E-18 169.4 11.0 114 506-622 1976-2099(2102)
187 cd04035 C2A_Rabphilin_Doc2 C2 99.4 1.6E-12 3.4E-17 118.8 14.0 98 379-476 15-122 (123)
188 cd08403 C2B_Synaptotagmin-3-5- 99.4 4E-13 8.7E-18 124.6 10.2 89 183-294 11-108 (134)
189 cd00276 C2B_Synaptotagmin C2 d 99.4 5.2E-13 1.1E-17 123.9 10.3 100 380-481 15-124 (134)
190 cd04021 C2_E3_ubiquitin_ligase 99.4 1.4E-12 3E-17 119.4 12.7 108 380-489 3-124 (125)
191 cd08409 C2B_Synaptotagmin-15 C 99.4 7.6E-13 1.6E-17 123.0 10.5 99 380-479 16-124 (137)
192 cd04047 C2B_Copine C2 domain s 99.4 2E-12 4.3E-17 115.6 10.5 85 191-299 5-101 (110)
193 cd04048 C2A_Copine C2 domain f 99.4 2.4E-12 5.2E-17 117.0 11.0 96 384-479 5-114 (120)
194 cd08692 C2B_Tac2-N C2 domain s 99.4 1.9E-12 4.2E-17 117.8 10.1 98 379-477 14-121 (135)
195 KOG1013 Synaptic vesicle prote 99.4 2.8E-13 6E-18 136.1 4.8 208 186-462 93-326 (362)
196 PF00168 C2: C2 domain; Inter 99.3 5.1E-12 1.1E-16 106.8 9.8 79 512-590 1-85 (85)
197 KOG1011 Neurotransmitter relea 99.3 2.3E-12 5E-17 138.0 8.9 174 508-692 293-488 (1283)
198 PLN03200 cellulose synthase-in 99.3 3E-12 6.6E-17 158.2 11.2 113 378-492 1979-2100(2102)
199 cd00275 C2_PLC_like C2 domain 99.3 2.1E-11 4.6E-16 112.1 13.8 109 380-491 3-127 (128)
200 PF00168 C2: C2 domain; Inter 99.3 1.2E-11 2.6E-16 104.5 9.3 80 188-290 1-85 (85)
201 cd08374 C2F_Ferlin C2 domain s 99.3 1.5E-11 3.3E-16 112.0 10.5 91 511-601 1-126 (133)
202 cd00030 C2 C2 domain. The C2 d 99.2 5.6E-11 1.2E-15 103.0 11.0 97 512-608 1-102 (102)
203 KOG1011 Neurotransmitter relea 99.2 1.5E-11 3.2E-16 131.9 8.6 110 379-490 295-422 (1283)
204 smart00239 C2 Protein kinase C 99.2 2.6E-10 5.7E-15 99.1 11.1 92 512-603 2-99 (101)
205 KOG1326 Membrane-associated pr 99.1 2.4E-10 5.2E-15 129.3 11.3 249 380-630 614-1028(1105)
206 cd00030 C2 C2 domain. The C2 d 99.1 9.5E-10 2.1E-14 95.2 10.3 97 381-477 1-102 (102)
207 PLN02223 phosphoinositide phos 99.0 2.1E-09 4.6E-14 117.9 14.0 99 509-610 408-519 (537)
208 PLN02270 phospholipase D alpha 99.0 2.5E-09 5.3E-14 122.0 13.8 116 509-626 7-150 (808)
209 smart00239 C2 Protein kinase C 99.0 2.4E-09 5.3E-14 92.9 10.2 90 381-470 2-97 (101)
210 PLN02270 phospholipase D alpha 99.0 2.9E-09 6.3E-14 121.4 13.1 119 378-496 7-152 (808)
211 PLN02952 phosphoinositide phos 99.0 6.4E-09 1.4E-13 116.7 13.9 110 509-621 469-595 (599)
212 KOG1328 Synaptic vesicle prote 98.9 5.2E-10 1.1E-14 122.0 3.7 103 482-598 933-1049(1103)
213 PLN02230 phosphoinositide phos 98.9 1.3E-08 2.8E-13 114.0 12.8 112 508-622 467-597 (598)
214 KOG1327 Copine [Signal transdu 98.9 1.9E-08 4E-13 109.5 13.4 173 411-597 41-235 (529)
215 cd08374 C2F_Ferlin C2 domain s 98.9 1.3E-08 2.8E-13 92.9 10.3 89 381-469 2-125 (133)
216 PLN02223 phosphoinositide phos 98.8 1.5E-08 3.3E-13 111.3 11.1 94 185-298 408-510 (537)
217 PLN02222 phosphoinositide phos 98.8 3.7E-08 8E-13 110.3 13.9 99 509-610 451-563 (581)
218 KOG0905 Phosphoinositide 3-kin 98.8 5.9E-09 1.3E-13 119.3 6.8 114 482-611 1512-1636(1639)
219 cd08689 C2_fungal_Pkc1p C2 dom 98.8 2.8E-08 6.1E-13 85.0 8.3 86 188-298 1-88 (109)
220 PLN02228 Phosphoinositide phos 98.8 8.1E-08 1.7E-12 107.3 13.8 111 509-622 430-560 (567)
221 KOG1031 Predicted Ca2+-depende 98.7 2.9E-08 6.3E-13 105.9 9.3 113 510-622 3-135 (1169)
222 KOG1327 Copine [Signal transdu 98.7 7.4E-08 1.6E-12 104.9 12.2 180 239-467 41-236 (529)
223 KOG0169 Phosphoinositide-speci 98.7 5.3E-08 1.1E-12 109.0 10.5 98 510-610 616-726 (746)
224 cd08689 C2_fungal_Pkc1p C2 dom 98.7 5.6E-08 1.2E-12 83.2 7.9 82 512-597 1-87 (109)
225 KOG1264 Phospholipase C [Lipid 98.6 2E-07 4.4E-12 103.4 11.7 113 510-627 1065-1192(1267)
226 PLN02230 phosphoinositide phos 98.6 1.3E-07 2.8E-12 106.1 10.2 97 185-298 468-571 (598)
227 PLN02222 phosphoinositide phos 98.6 2.6E-07 5.7E-12 103.5 11.6 95 185-298 451-554 (581)
228 KOG0169 Phosphoinositide-speci 98.5 1.8E-07 3.9E-12 104.8 8.7 93 187-298 617-717 (746)
229 PLN02952 phosphoinositide phos 98.5 1.5E-06 3.3E-11 97.8 14.3 99 379-480 470-582 (599)
230 KOG1031 Predicted Ca2+-depende 98.5 5.3E-07 1.2E-11 96.5 9.6 112 379-490 3-134 (1169)
231 KOG1264 Phospholipase C [Lipid 98.5 5.6E-07 1.2E-11 100.0 9.8 88 187-298 1066-1162(1267)
232 KOG1328 Synaptic vesicle prote 98.5 5.1E-08 1.1E-12 106.9 1.5 89 186-297 947-1048(1103)
233 PF10296 DUF2404: Putative int 98.3 8.9E-07 1.9E-11 75.8 6.3 72 3-74 8-80 (91)
234 PLN02228 Phosphoinositide phos 98.3 7.8E-06 1.7E-10 91.6 13.8 110 380-492 432-561 (567)
235 PLN02352 phospholipase D epsil 98.3 4.2E-06 9.2E-11 95.8 11.9 113 507-628 7-134 (758)
236 PLN02352 phospholipase D epsil 98.2 1E-05 2.2E-10 92.8 12.3 114 378-497 9-135 (758)
237 KOG0905 Phosphoinositide 3-kin 98.2 2.1E-06 4.6E-11 99.1 6.5 102 379-480 1524-1636(1639)
238 cd08683 C2_C2cd3 C2 domain fou 98.1 4.8E-06 1E-10 73.6 6.1 97 512-608 1-143 (143)
239 PF12416 DUF3668: Cep120 prote 97.9 0.0014 3.1E-08 69.4 20.7 211 381-599 2-296 (340)
240 KOG2060 Rab3 effector RIM1 and 97.8 1.5E-05 3.3E-10 82.4 4.5 104 507-610 266-379 (405)
241 cd08683 C2_C2cd3 C2 domain fou 97.8 2.6E-05 5.6E-10 69.0 4.5 97 381-477 1-143 (143)
242 PLN02964 phosphatidylserine de 97.8 3.2E-05 7E-10 88.1 6.3 86 184-299 52-140 (644)
243 cd08684 C2A_Tac2-N C2 domain f 97.5 0.00011 2.4E-09 60.4 3.9 91 514-607 3-102 (103)
244 cd08684 C2A_Tac2-N C2 domain f 97.3 0.0002 4.3E-09 58.9 3.4 93 382-476 2-102 (103)
245 KOG3837 Uncharacterized conser 97.2 0.00034 7.4E-09 73.2 4.1 117 509-625 366-505 (523)
246 PLN02964 phosphatidylserine de 97.1 0.00062 1.3E-08 77.9 5.4 88 507-601 51-142 (644)
247 PF12416 DUF3668: Cep120 prote 97.1 0.0057 1.2E-07 64.9 12.1 108 512-622 2-131 (340)
248 KOG2060 Rab3 effector RIM1 and 97.0 0.00041 8.9E-09 72.1 3.0 103 378-480 268-380 (405)
249 KOG3837 Uncharacterized conser 96.9 0.00069 1.5E-08 71.0 3.5 113 380-492 368-503 (523)
250 PF15627 CEP76-C2: CEP76 C2 do 96.0 0.075 1.6E-06 49.7 11.0 119 507-626 6-152 (156)
251 KOG1265 Phospholipase C [Lipid 95.7 0.038 8.3E-07 63.4 8.8 109 507-626 700-828 (1189)
252 cd08398 C2_PI3K_class_I_alpha 95.3 0.11 2.5E-06 49.1 9.5 84 186-295 8-105 (158)
253 PF15627 CEP76-C2: CEP76 C2 do 95.1 0.2 4.4E-06 46.9 10.1 92 379-470 9-120 (156)
254 cd08693 C2_PI3K_class_I_beta_d 94.9 0.16 3.5E-06 48.9 9.4 85 510-596 8-120 (173)
255 cd08693 C2_PI3K_class_I_beta_d 94.9 0.16 3.4E-06 49.0 9.3 86 186-295 8-119 (173)
256 KOG1265 Phospholipase C [Lipid 94.4 0.061 1.3E-06 61.8 5.7 91 379-479 703-805 (1189)
257 cd08398 C2_PI3K_class_I_alpha 94.4 0.27 5.8E-06 46.6 9.3 84 510-597 8-107 (158)
258 PF10358 NT-C2: N-terminal C2 94.4 1.1 2.4E-05 41.6 13.5 112 380-495 8-138 (143)
259 cd08380 C2_PI3K_like C2 domain 93.9 0.3 6.6E-06 46.2 8.8 87 510-597 8-108 (156)
260 cd08380 C2_PI3K_like C2 domain 93.9 0.33 7.1E-06 46.0 8.9 87 186-295 8-106 (156)
261 PF10358 NT-C2: N-terminal C2 93.8 1.9 4.2E-05 39.9 13.9 111 508-622 5-134 (143)
262 cd04012 C2A_PI3K_class_II C2 d 93.7 0.28 6.1E-06 47.3 8.1 88 509-596 7-119 (171)
263 cd08397 C2_PI3K_class_III C2 d 93.6 0.25 5.3E-06 47.0 7.5 83 529-622 28-122 (159)
264 cd08397 C2_PI3K_class_III C2 d 92.5 0.48 1E-05 45.0 7.6 64 230-294 31-105 (159)
265 cd04012 C2A_PI3K_class_II C2 d 92.1 0.63 1.4E-05 44.9 8.0 88 185-295 7-118 (171)
266 KOG1452 Predicted Rho GTPase-a 91.8 0.34 7.3E-06 49.6 5.8 82 183-287 48-134 (442)
267 cd08399 C2_PI3K_class_I_gamma 90.8 1.6 3.4E-05 42.2 9.2 68 510-578 10-88 (178)
268 cd08687 C2_PKN-like C2 domain 90.6 2.1 4.5E-05 36.1 8.3 82 531-622 9-92 (98)
269 cd08695 C2_Dock-B C2 domains f 90.3 2.5 5.4E-05 41.1 10.1 55 240-294 54-112 (189)
270 cd08687 C2_PKN-like C2 domain 90.0 2.5 5.3E-05 35.7 8.3 83 400-491 9-92 (98)
271 KOG1452 Predicted Rho GTPase-a 89.3 0.65 1.4E-05 47.6 5.4 115 507-622 48-166 (442)
272 PF00792 PI3K_C2: Phosphoinosi 89.3 2.8 6E-05 39.0 9.4 65 545-620 23-98 (142)
273 cd08694 C2_Dock-A C2 domains f 88.5 2 4.3E-05 41.9 7.9 55 240-294 54-114 (196)
274 PF00792 PI3K_C2: Phosphoinosi 88.0 1.7 3.8E-05 40.3 7.1 63 232-295 5-84 (142)
275 cd08399 C2_PI3K_class_I_gamma 87.6 3.2 7E-05 40.1 8.8 101 380-492 11-138 (178)
276 PF11618 DUF3250: Protein of u 87.1 3 6.5E-05 36.7 7.6 90 534-625 2-107 (107)
277 PF14429 DOCK-C2: C2 domain in 86.0 1.8 3.8E-05 42.3 6.3 56 240-295 60-120 (184)
278 smart00142 PI3K_C2 Phosphoinos 84.8 5 0.00011 34.8 7.8 68 512-579 13-92 (100)
279 cd08695 C2_Dock-B C2 domains f 84.2 8.6 0.00019 37.4 9.8 52 412-463 54-112 (189)
280 PF11618 DUF3250: Protein of u 83.6 7.7 0.00017 34.1 8.4 67 403-469 2-77 (107)
281 cd08694 C2_Dock-A C2 domains f 82.1 12 0.00027 36.5 10.0 52 412-463 54-114 (196)
282 cd08697 C2_Dock-D C2 domains f 81.5 19 0.00041 35.0 11.0 56 240-295 57-123 (185)
283 PF15625 CC2D2AN-C2: CC2D2A N- 81.4 4.9 0.00011 38.5 7.0 68 399-466 36-107 (168)
284 PF14429 DOCK-C2: C2 domain in 78.1 7.4 0.00016 37.9 7.3 69 543-622 60-136 (184)
285 PTZ00447 apical membrane antig 77.9 15 0.00031 38.6 9.3 105 380-489 59-170 (508)
286 smart00142 PI3K_C2 Phosphoinos 76.5 13 0.00029 32.1 7.7 68 381-448 13-91 (100)
287 PF15625 CC2D2AN-C2: CC2D2A N- 76.4 11 0.00025 36.0 7.8 66 230-297 38-107 (168)
288 cd08679 C2_DOCK180_related C2 72.9 7.5 0.00016 37.6 5.7 53 243-295 56-115 (178)
289 cd08696 C2_Dock-C C2 domains f 70.2 13 0.00028 36.0 6.5 56 239-294 54-117 (179)
290 KOG0694 Serine/threonine prote 63.8 8.1 0.00018 44.4 4.3 167 398-579 26-196 (694)
291 cd08679 C2_DOCK180_related C2 61.8 23 0.0005 34.2 6.6 52 543-595 54-115 (178)
292 cd08696 C2_Dock-C C2 domains f 60.5 31 0.00068 33.4 7.1 54 542-595 54-118 (179)
293 cd08697 C2_Dock-D C2 domains f 56.5 45 0.00098 32.5 7.5 54 542-595 56-123 (185)
294 KOG4269 Rac GTPase-activating 55.2 11 0.00024 44.3 3.5 72 179-278 752-829 (1112)
295 KOG1329 Phospholipase D1 [Lipi 50.3 20 0.00042 42.7 4.5 80 530-609 137-220 (887)
296 KOG1329 Phospholipase D1 [Lipi 48.8 20 0.00043 42.6 4.3 97 399-495 137-243 (887)
297 PF06219 DUF1005: Protein of u 46.7 1.9E+02 0.0042 31.6 10.8 93 530-622 35-166 (460)
298 KOG2419 Phosphatidylserine dec 40.9 4.8 0.0001 45.3 -2.0 148 380-564 281-444 (975)
299 KOG0694 Serine/threonine prote 36.8 26 0.00056 40.5 2.7 49 229-278 28-78 (694)
300 KOG3532 Predicted protein kina 33.8 75 0.0016 36.6 5.6 161 29-201 143-344 (1051)
301 PF07162 B9-C2: Ciliary basal 33.1 4.3E+02 0.0094 25.1 10.4 74 515-594 7-102 (168)
302 PTZ00447 apical membrane antig 29.7 6.6E+02 0.014 26.8 11.1 109 507-621 55-171 (508)
303 PF14909 SPATA6: Spermatogenes 29.5 3.8E+02 0.0082 24.8 8.4 69 528-597 17-100 (140)
304 PF06585 JHBP: Haemolymph juve 28.5 4.3E+02 0.0093 26.6 10.1 38 91-128 145-190 (248)
305 PF10409 PTEN_C2: C2 domain of 27.7 4.5E+02 0.0098 23.6 10.4 86 380-466 5-98 (134)
306 PF06219 DUF1005: Protein of u 27.7 8.6E+02 0.019 26.8 13.4 81 400-480 36-148 (460)
307 KOG0904 Phosphatidylinositol 3 26.7 1E+02 0.0022 36.8 5.3 66 186-276 343-421 (1076)
308 PF10409 PTEN_C2: C2 domain of 25.6 4.7E+02 0.01 23.5 8.8 87 510-597 4-98 (134)
309 KOG3543 Ca2+-dependent activat 22.6 1.7E+02 0.0036 33.5 5.8 95 380-478 342-440 (1218)
310 cd05137 RasGAP_CLA2_BUD2 CLA2/ 22.5 1.1E+02 0.0024 33.7 4.5 37 585-622 1-43 (395)
311 PF14909 SPATA6: Spermatogenes 22.1 2.8E+02 0.006 25.7 6.2 66 230-297 21-100 (140)
312 KOG2419 Phosphatidylserine dec 21.4 17 0.00036 41.3 -2.0 69 511-580 281-357 (975)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.3e-73 Score=641.90 Aligned_cols=561 Identities=22% Similarity=0.294 Sum_probs=462.6
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHhhcCCcccceEEEeEEeeCCCCcccceeeeEeCCCCCEEEEEEeEEecCCchhhhhh
Q 004872 2 EVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLL 81 (726)
Q Consensus 2 ~~W~~~~~~~~s~~~~~~ve~~l~~~~P~~i~~~~~~~f~lG~~pp~i~~v~~~~~~~~d~~~~d~~~~~~~~~~~~~~~ 81 (726)
+|||++ ||.+|++|.+++|+.|+++.|+||++++|++||||++||||++||+|+++++|.+.|||+|+|+|+|++++.+
T Consensus 232 KfW~i~-eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~ 310 (1227)
T COG5038 232 KFWPII-EPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA 310 (1227)
T ss_pred hheecc-ChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence 799997 9999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred --------------hhhcCCccc-eeEEEEEeeEEEeEEEEe-----eeeceeEEEEEeecCceEEE-EeeecCCCCCcc
Q 004872 82 --------------AKLAKPLLG-TAKIVINSLHIKGDLLVM-----PILEGKAVLYSFVSIPDVRI-GVAFGSGGSQSL 140 (726)
Q Consensus 82 --------------~~~~~~~~g-~~~i~v~~~~~~G~~rv~-----~~p~~~~v~~sf~~~P~v~~-~~~~g~~~~~~~ 140 (726)
++.|+.... ++||+|+++.|+|++|++ ++|+++.|++||||.|+||| .+++|.+ .|++
T Consensus 311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~-~~g~ 389 (1227)
T COG5038 311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGD-FFGV 389 (1227)
T ss_pred HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCC-ccce
Confidence 334444333 899999999999999999 78999999999999999999 8899988 8999
Q ss_pred CCccCCCHHHHHHHHHHHhhhccccCCceeeecCcccccc-ccccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCc
Q 004872 141 PATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR-KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSS 219 (726)
Q Consensus 141 ~i~~iPgl~~~~~~~i~~~l~~~~v~P~~~~~~l~~~~~~-~~~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy 219 (726)
|||+||||++||+++|+++|++||++|+++++||+.++++ ...++|||.|+|.+|++|+..+..
T Consensus 390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~--------------- 454 (1227)
T COG5038 390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDST--------------- 454 (1227)
T ss_pred eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCccccccc---------------
Confidence 9999999999999999999999999999999999999987 778999999999999999988721
Q ss_pred cccccCCCCcCcEEEEEEc--cEEeeeecCCCCCCcccceeEEEEecCCceEEEEEEEeCCCCCCcceeEEEEEeceecc
Q 004872 220 LEEHYEDKDLTTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 297 (726)
Q Consensus 220 ~~~~~~~k~~DPyV~v~~g--~~~rTt~i~~t~nP~WnEtf~~~v~~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~ 297 (726)
+++. +|||+++.+. ...||++++++.||+|||+||+++++.++.|.++|||.+.. .+|+.+|++.++|..|.
T Consensus 455 ----i~~~-vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~-~sd~vvG~~~l~L~~L~ 528 (1227)
T COG5038 455 ----INGT-VDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSF-KSDKVVGSTQLDLALLH 528 (1227)
T ss_pred ----ccCC-CCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEecccc-CCcceeeeEEechHHhh
Confidence 1111 2888888874 34689999999999999999999999999999999998886 88999999999999998
Q ss_pred CCCcceeecCCCCccccccccccCceeeeeeecCCccccEEEEEEEeeeeecCCCCCCCCCccCCCCccccc--CCcccc
Q 004872 298 DDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSG--SSNFIS 375 (726)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~~~~~ 375 (726)
+++.. .++..++. ...++.|+|.+++.+-+-..+.. ...+ .|....
T Consensus 529 ~~~~~-----------------~ne~~e~~--~~~k~vGrL~yDl~ffp~~e~k~-------------~~~~s~e~~ed~ 576 (1227)
T COG5038 529 QNPVK-----------------KNELYEFL--RNTKNVGRLTYDLRFFPVIEDKK-------------ELKGSVEPLEDS 576 (1227)
T ss_pred hcccc-----------------ccceeeee--ccCccceEEEEeeeeecccCCcc-------------ccccccCCcccC
Confidence 76532 11222221 23346799998874332111100 0111 112222
Q ss_pred CCccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-CCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCC
Q 004872 376 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGD 452 (726)
Q Consensus 376 ~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-g~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d 452 (726)
.+ |++.+++.++++|.... ......+++++. +++++.|+++ .+.+|.||+.+...+.+. ...+.+.++|.. ..
T Consensus 577 n~-GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g 652 (1227)
T COG5038 577 NT-GILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SG 652 (1227)
T ss_pred Cc-ceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cC
Confidence 24 49999999999996532 222333488888 5678888999 999999999999988775 678889998876 36
Q ss_pred cceEEEEEEccccccCC-eeeeeeeccccccceeEEEEEEEEecCCCCCCCC-CCCCCceEEEEEEEEeecCcccccCCC
Q 004872 453 ENMGSARVNLEGLVEGS-VRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQ-NIGSGNGWIELVIVEARDLVAADLRGT 530 (726)
Q Consensus 453 ~~iG~~~i~L~~l~~~~-~~~~w~~L~~~~~G~I~l~~~~~~~~~~~~~~~~-~~~~~~g~L~v~v~~a~~L~~~d~~g~ 530 (726)
+.||....+|.+++... ....||++. .++|+|.++..|.|+....++... .+..+.|.++|.|..|.+|......+.
T Consensus 653 ~~i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~ 731 (1227)
T COG5038 653 KVIATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGK 731 (1227)
T ss_pred ceeccccccchHhhhccccceEEEEcC-CCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcc
Confidence 78899899999988655 567899998 478999999999999876655443 377899999999999999998889999
Q ss_pred CccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEec--CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCc---eee
Q 004872 531 SDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPD--DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM---ADK 604 (726)
Q Consensus 531 ~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v--~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~---~~~ 604 (726)
+|||++|.+++ .++||-....++||.||+..+.++ ..+.+.++++|++..+.|.++|++.++.+++..... ...
T Consensus 732 ~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 732 SDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred cccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 99999999987 478999999999999999999998 467799999999999999999999999988754211 111
Q ss_pred ---------EEecC-CCCCeEEEEEEEE
Q 004872 605 ---------WIPLQ-GVRKGEIHVLITR 622 (726)
Q Consensus 605 ---------w~~L~-~~~~G~i~l~l~~ 622 (726)
-+.+. -..+|++.+.+.|
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f 839 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRF 839 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEE
Confidence 11121 2346999999999
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=260.42 Aligned_cols=216 Identities=32% Similarity=0.489 Sum_probs=188.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC-C
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-G 451 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-~ 451 (726)
.|.|+|.+|++|+.++..|.+||||++++ .+.+.+|++. +++||.|||+|.|.+.. ....|.+.|||.|++ +
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr 247 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSR 247 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCccc
Confidence 79999999999999997788999999999 3468999999 99999999999999654 377999999999999 9
Q ss_pred CcceEEEEEEccccccCCeeeeeeecccc------ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCccc
Q 004872 452 DENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAA 525 (726)
Q Consensus 452 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~ 525 (726)
+++||++.++|..+........|.+|... ..|+|.++++|. +..|.|+|.|++|++|...
T Consensus 248 ~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~--------------p~~g~ltv~v~kar~L~~~ 313 (421)
T KOG1028|consen 248 HDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYL--------------PTAGRLTVVVIKARNLKSM 313 (421)
T ss_pred ccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEee--------------cCCCeEEEEEEEecCCCcc
Confidence 99999999999998776667789999763 237999999999 5679999999999999999
Q ss_pred ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccc
Q 004872 526 DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR 595 (726)
Q Consensus 526 d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~ 595 (726)
+..+.+||||++++-. .+++|.+.++++||+|||+|.|.++ +..|.|+|||+|.++++++||++.+....
T Consensus 314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999999999999932 3679999999999999999999874 56899999999999999999999998764
Q ss_pred c------------CCCCceeeEEecC
Q 004872 596 L------------PPNQMADKWIPLQ 609 (726)
Q Consensus 596 l------------~~~~~~~~w~~L~ 609 (726)
- .++.+..+|+.|.
T Consensus 394 ~~~~~~hW~~m~~~p~~pv~~wh~l~ 419 (421)
T KOG1028|consen 394 TGEEVRHWQEMLNSPRKPVAQWHSLR 419 (421)
T ss_pred CchHHHHHHHHHhCccCceeeeEecc
Confidence 1 2344566676664
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.93 E-value=8.1e-24 Score=240.47 Aligned_cols=432 Identities=16% Similarity=0.206 Sum_probs=293.0
Q ss_pred CCCHHHHHHHHHHHhhhccccCCce---eeecC-----ccccc-------cccccccEEEEEEEeecCCCCCCCCCCCcc
Q 004872 145 LPGVSNWLARLINETLVKTLVEPRR---RCYSL-----PAVDL-------RKKAVGGIVYVRVISASKLSRSSLRGSPSR 209 (726)
Q Consensus 145 iPgl~~~~~~~i~~~l~~~~v~P~~---~~~~l-----~~~~~-------~~~~~~GvL~V~v~~A~~L~~~~~~g~~~~ 209 (726)
|+...+-+.++|..++...++.|.+ -.+.+ |.-.. -...++|+++|+|..|.+|......|.
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~--- 731 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGK--- 731 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcc---
Confidence 5667777889999999998888886 22332 21111 123588999999999999986554443
Q ss_pred cccccCCCCccccccCCCCcCcEEEEEEccE--EeeeecCCCCCCcccceeEEEEecCCceEEEEEEEeCCCCCCcceeE
Q 004872 210 RQQNYSADSSLEEHYEDKDLTTFVEIELEEL--TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLT 287 (726)
Q Consensus 210 ~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~--~rTt~i~~t~nP~WnEtf~~~v~~~~~~L~~~V~D~d~~~~~dd~lG 287 (726)
+|||++|.++.. +||-....+.||.|||..|..+.+..+.+.++++|.+.. +.|..||
T Consensus 732 -------------------~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~s-gddr~lg 791 (1227)
T COG5038 732 -------------------SDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEES-GDDRNLG 791 (1227)
T ss_pred -------------------cccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhc-cccceec
Confidence 399999999854 455556799999999999999999999999999999986 7788999
Q ss_pred EEEEeceeccCCCcceeecCCCCccccccccccCce--eeeeeecCCccccEEEEEEEeeeeecC--C--CC--------
Q 004872 288 SCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDE--VEMTVPFEGVNSGELTVRLVLKEWQFS--D--GS-------- 353 (726)
Q Consensus 288 ~~~i~L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~G~l~~~l~~~~~~~~--~--~~-------- 353 (726)
++.++++++.... +++....-. .|.+ ..+..+ ..+.+|.+.+...+.+.... . ..
T Consensus 792 ~~~i~vsn~~~k~-------~~s~~~~~i---~g~~~t~~l~~~-~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e 860 (1227)
T COG5038 792 EVNINVSNVSKKD-------EDSALMETI---DGAEETGKLSLT-GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSE 860 (1227)
T ss_pred eeeeeeeeeeecC-------CCcceEEee---cCcccccccccc-cCCcceeEEEEEEEEeecccCChHHhcchhhhhhH
Confidence 9999999987521 111111000 0110 011111 11234555554422221000 0 00
Q ss_pred -----------CC----CCCccC---------CC------CcccccCCccccCCccEEEEEEEEeecCCCCCCCCCCCcE
Q 004872 354 -----------HS----LNNFHS---------GS------QQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPY 403 (726)
Q Consensus 354 -----------~s----~~~~~~---------~~------~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~d~~g~~dpy 403 (726)
.. ..+... .. +.+......++... |.+.+.+..++=.. +.-|
T Consensus 861 ~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~s-gv~~i~i~~g~l~~-------~~~~ 932 (1227)
T COG5038 861 KRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKS-GVLGIQILSGELPD-------PGQY 932 (1227)
T ss_pred HHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccC-CceEEEEEEeecCC-------cceE
Confidence 00 000000 00 00011111123334 48888888876332 3347
Q ss_pred EEEEECC--e-EeeccccCCCCCceeeEEEEEeeC-CceeEEEEEEeecCCCCcceEEEEEEccccccCC-eeeeeeecc
Q 004872 404 VKLQYGK--I-VQRTRTAHSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSARVNLEGLVEGS-VRDIWVPLE 478 (726)
Q Consensus 404 v~v~lg~--~-~~kT~~~~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~-~~~~w~~L~ 478 (726)
+.+.++. . ..-+....+..+.|.+.-...+.+ .-...+|+|.+.....++.++...++-.++..+. ..+.|+.+.
T Consensus 933 l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~ 1012 (1227)
T COG5038 933 LQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFP 1012 (1227)
T ss_pred EEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecC
Confidence 7777743 2 222222134445555443344433 3456788888863337889999888887777655 566788887
Q ss_pred ccccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCee
Q 004872 479 KVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQW 557 (726)
Q Consensus 479 ~~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~w 557 (726)
+. ..+.+++.|.|+.. .......-...|.|.|.+..|+||++.|.+|.+||||++.++++ .++|+++++|+||+|
T Consensus 1013 g~--~~~~v~~~~tPv~~--~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvw 1088 (1227)
T COG5038 1013 GS--AKVLVQVSYTPVPV--KLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVW 1088 (1227)
T ss_pred CC--ceEEEEEEEeeccc--ccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCc
Confidence 64 78999999998821 22223344567999999999999999999999999999999886 789999999999999
Q ss_pred eeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC----CeEEEEEEEE
Q 004872 558 HQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR----KGEIHVLITR 622 (726)
Q Consensus 558 ne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~G~i~l~l~~ 622 (726)
||.+..++. .+.+.+.|+|+|.-.+++.||.+.++|..+..+.....-.+|.|.. .|.++..+.+
T Consensus 1089 NEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1089 NEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred cccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcceEecccEeecceec
Confidence 999999985 5789999999999999999999999999999998888889998754 4666666555
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-25 Score=244.61 Aligned_cols=214 Identities=23% Similarity=0.291 Sum_probs=184.4
Q ss_pred ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCee
Q 004872 481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQW 557 (726)
Q Consensus 481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~w 557 (726)
..|+|.+++.|. .....|.|+|++|++|++.+..|.+||||++++.. .+.+|+++++|+||+|
T Consensus 152 ~~G~l~fsl~Yd--------------~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~f 217 (421)
T KOG1028|consen 152 AVGNLQFSLQYD--------------FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVF 217 (421)
T ss_pred eeeeEEEEEEec--------------ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCcc
Confidence 469999999887 67799999999999999999788999999999965 4679999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC------CCeEEEEEEEEEecC
Q 004872 558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITRKVPE 626 (726)
Q Consensus 558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~~~p~ 626 (726)
||+|.|.+. ...|.+.|||+|+|++|++||++.++|..+........|.+|... ..|||+++++| +|.
T Consensus 218 nEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y-~p~ 296 (421)
T KOG1028|consen 218 NETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCY-LPT 296 (421)
T ss_pred ccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEe-ecC
Confidence 999999963 689999999999999999999999999999887778899999631 23799999999 998
Q ss_pred cccc----------ccCC---CCCCcceeeeccchhhHhhhhhhccccCCCc-hhhhhhcccCccchhhHHHHHHHHHHH
Q 004872 627 LDKR----------TSID---SDSSSTRAHKISGQMKQMMVKFQSLIDDDNL-EELSTALSELETLEDSQEEYMVQLETE 692 (726)
Q Consensus 627 ~~~~----------~~~~---~~~p~~k~~~~~~~~r~~l~k~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (726)
++++ ..++ ..|||||+++..++.+ ++|++|+++++++ |+||++|.|.++.+++++..++-...+
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~--~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d 374 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKR--LSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD 374 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCce--eeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence 6665 2222 3489999999999977 9999999999999 999999999999999999777633333
Q ss_pred HHHhhhhhhhhcccccccCC
Q 004872 693 QMLLLNKIKELGQEIINSSP 712 (726)
Q Consensus 693 ~~~~~~k~~~~~~~~~~~~~ 712 (726)
.+ .+.+++.+|+.++|...
T Consensus 375 ~d-~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 375 HD-TLGSNDLIGRCILGSDS 393 (421)
T ss_pred cc-cccccceeeEEEecCCC
Confidence 33 35777899999999876
No 5
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=6.9e-23 Score=221.29 Aligned_cols=230 Identities=22% Similarity=0.314 Sum_probs=195.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEE
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 457 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~ 457 (726)
.|.|.|.+|+||++++..|..||||.|.++ ..++||.++ +++.|.|.|.|.|.+...-..|.|.|||+|..+|+.||.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGK 85 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGK 85 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccccccccccce
Confidence 599999999999999999999999999995 569999999 999999999999998888889999999999449999999
Q ss_pred EEEEccccccCCeeeeeeeccccc-----cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCc
Q 004872 458 ARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSD 532 (726)
Q Consensus 458 ~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~D 532 (726)
+.|.=++|..-+..+.||.|.... +|+|++++.+.+... ..-++.++++++++.+.+ ++.+|
T Consensus 86 vai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~------------~~~~~c~~L~~r~~~P~~-~~~~d 152 (800)
T KOG2059|consen 86 VAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ------------SSGLVCHVLKTRQGLPII-NGQCD 152 (800)
T ss_pred eeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC------------CCcchhhhhhhcccCcee-CCCCC
Confidence 999999998777888999998753 699999998875432 234556677777776665 45599
Q ss_pred cEEEEEECCe----EEEeEeeeCCCCCeeeeEEEEecC------------------CCeEEEEEEE-CCCCCCCCeeEEE
Q 004872 533 PYVKVQYGDL----KKRTKVIFKTLNPQWHQTLEFPDD------------------GSPLTLHVRD-HNALLASSSIGDC 589 (726)
Q Consensus 533 Pyv~v~~~~~----~~kT~v~~~t~nP~wne~~~f~v~------------------~~~l~i~V~d-~d~~~~d~~lG~~ 589 (726)
||++|...+. ..+|+++++|.+|.|+|.|+|.+. ...|.+++|| .+....++|+|++
T Consensus 153 p~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGev 232 (800)
T KOG2059|consen 153 PFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEV 232 (800)
T ss_pred cceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeE
Confidence 9999999653 359999999999999999999973 1358889998 6666679999999
Q ss_pred EEEccccCCCCceeeEEecCC----------CCCeEEEEEEEE
Q 004872 590 VVEYQRLPPNQMADKWIPLQG----------VRKGEIHVLITR 622 (726)
Q Consensus 590 ~i~l~~l~~~~~~~~w~~L~~----------~~~G~i~l~l~~ 622 (726)
.+++..+........||.|+. ..-|.+++.++|
T Consensus 233 rv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y 275 (800)
T KOG2059|consen 233 RVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTY 275 (800)
T ss_pred EeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEe
Confidence 999998876667889999963 234889999998
No 6
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=1.5e-21 Score=176.13 Aligned_cols=113 Identities=19% Similarity=0.377 Sum_probs=102.4
Q ss_pred ceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeC-CCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCe
Q 004872 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS 585 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~ 585 (726)
.|.|+|+|++|++++..+ .|.+||||++.+++++.+|+++.+ +.||+|||+|.|++. ...|.|+|||+|.+++|++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER 79 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence 389999999999988777 789999999999999999999876 899999999999985 4689999999999999999
Q ss_pred eEEEEEEcc-ccCCCCceeeEEecCC----CCCeEEEEEEEE
Q 004872 586 IGDCVVEYQ-RLPPNQMADKWIPLQG----VRKGEIHVLITR 622 (726)
Q Consensus 586 lG~~~i~l~-~l~~~~~~~~w~~L~~----~~~G~i~l~l~~ 622 (726)
||++.+++. .+..++..+.|++|.+ ...|+|+++|+|
T Consensus 80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999996 5777888899999976 456999999986
No 7
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.85 E-value=7.7e-21 Score=168.51 Aligned_cols=109 Identities=19% Similarity=0.310 Sum_probs=97.0
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC----eEEEeEeeeCCCCCeee
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD----LKKRTKVIFKTLNPQWH 558 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~v~~~t~nP~wn 558 (726)
|+|.++++|. +..+.|+|+|++|++|+ ..|.+||||++++.. .+++|+++++|+||+||
T Consensus 1 ~~l~fsL~Y~--------------~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfn 63 (118)
T cd08677 1 PKLHYSLSYD--------------KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWE 63 (118)
T ss_pred CeEEEEEEEc--------------CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccc
Confidence 5788999887 67899999999999999 346699999999953 47799999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872 559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608 (726)
Q Consensus 559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 608 (726)
|+|.|.++ ..+|.|+|||+|+++++++||++.++++++..+.....|..|
T Consensus 64 E~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 64 EELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999984 678999999999999999999999999998777777788765
No 8
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=3.1e-20 Score=170.53 Aligned_cols=110 Identities=29% Similarity=0.469 Sum_probs=99.2
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--------CCeEEEEEEECCCCCCC
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--------GSPLTLHVRDHNALLAS 583 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--------~~~l~i~V~d~d~~~~d 583 (726)
++|+|++|+||+..+..|.+||||++.+++.+++|+++++++||+|||+|.|.+. ...|.++|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 4799999999999999999999999999999999999999999999999999873 35799999999999999
Q ss_pred CeeEEEEEEccccC--CCCceeeEEecCC------CCCeEEEEEEE
Q 004872 584 SSIGDCVVEYQRLP--PNQMADKWIPLQG------VRKGEIHVLIT 621 (726)
Q Consensus 584 ~~lG~~~i~l~~l~--~~~~~~~w~~L~~------~~~G~i~l~l~ 621 (726)
++||++.++|.++. .+.....||+|.+ ..+|+|+++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 5667889999974 24599999874
No 9
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.83 E-value=5.2e-20 Score=167.55 Aligned_cols=111 Identities=30% Similarity=0.530 Sum_probs=101.1
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 556 (726)
.|+|.++++|. .+.|+|+|++|+||+..+ .|.+||||++++.+ .+++|+++++++||+
T Consensus 1 ~G~l~~~l~y~----------------~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~ 63 (122)
T cd08381 1 GGQVKLSISYK----------------NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPT 63 (122)
T ss_pred CCeEEEEEEEe----------------CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCC
Confidence 48999999987 288999999999999999 89999999999963 478999999999999
Q ss_pred eeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 557 WHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 557 wne~~~f~v------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
|||+|.|++ ....|.|+|||+|.++++++||++.++|.++..++....||+|.
T Consensus 64 wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 64 FNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred cccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 999999986 35789999999999999999999999999998888889999983
No 10
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.83 E-value=4.6e-20 Score=168.79 Aligned_cols=114 Identities=29% Similarity=0.434 Sum_probs=103.2
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccC-CCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP 555 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP 555 (726)
+|+|.+++.|. +..+.|.|+|++|+||++.+.. |.+||||++++.+ .++||+++++++||
T Consensus 1 ~G~i~~sl~y~--------------~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP 66 (125)
T cd08393 1 QGSVQFALDYD--------------PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNP 66 (125)
T ss_pred CcEEEEEEEEE--------------CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCC
Confidence 49999999998 5568999999999999999875 8999999999942 35799999999999
Q ss_pred eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 556 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
+|||+|.|++. ...|.++|||++.++++++||++.++|.++...+....||+|+
T Consensus 67 ~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 67 VFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred ccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999984 4689999999999999999999999999998888889999984
No 11
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.83 E-value=8.3e-20 Score=166.94 Aligned_cols=114 Identities=21% Similarity=0.345 Sum_probs=102.9
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCccccc-CCCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNP 555 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP 555 (726)
+|+|.+++.|. +..+.|.|+|++|+||++.+. .|.+||||++++.. .++||+++++++||
T Consensus 1 ~G~i~~sl~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP 66 (125)
T cd04029 1 SGEILFSLSYD--------------YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP 66 (125)
T ss_pred CcEEEEEEEEE--------------CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCC
Confidence 49999999997 567999999999999998765 58999999999942 36799999999999
Q ss_pred eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 556 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
+|||+|.|.+. ...|.|+|||++.++++++||++.++|..+...+..+.|++|+
T Consensus 67 ~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 67 VYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred cccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999999984 4679999999999999999999999999999888899999984
No 12
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=1.9e-19 Score=166.87 Aligned_cols=119 Identities=30% Similarity=0.478 Sum_probs=108.3
Q ss_pred CCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCC
Q 004872 504 NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNAL 580 (726)
Q Consensus 504 ~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~ 580 (726)
......|.|+|+|++|++|++.+..|.+||||++.+++..++|+++++++||.|||+|.|.+. ...|.|+|||++.+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 345678999999999999999999999999999999999999999999999999999999984 46799999999999
Q ss_pred CCCCeeEEEEEEccccCC-----CCceeeEEecCCCCCeEEEEEEEE
Q 004872 581 LASSSIGDCVVEYQRLPP-----NQMADKWIPLQGVRKGEIHVLITR 622 (726)
Q Consensus 581 ~~d~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~l~~ 622 (726)
++|++||++.+++.++.. .....+|..|.+..+|+|++++++
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 999999999999998865 445668899999899999999987
No 13
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=2.8e-19 Score=162.94 Aligned_cols=112 Identities=32% Similarity=0.551 Sum_probs=103.2
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG 587 (726)
+|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.+++||+|||+|.|.+. ...|.|+|||++.+++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 5899999999999999999999999999987 5789999999999999999999974 578999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCCC----CCeEEEEEEEE
Q 004872 588 DCVVEYQRLPPNQMADKWIPLQGV----RKGEIHVLITR 622 (726)
Q Consensus 588 ~~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~l~~ 622 (726)
++.+++.++..+...+.|++|.+. ..|+|+++++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEE
Confidence 999999999988889999999743 35999999998
No 14
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=4.9e-19 Score=160.13 Aligned_cols=110 Identities=33% Similarity=0.524 Sum_probs=103.3
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEE
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGD 588 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~ 588 (726)
++|+|++|++|+..+..|.+||||++++++.+.+|+++++|+||.|||+|.|.+. ...|.|+|||++.+++|++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 7899999999999998999999999999999999999999999999999999973 4789999999999999999999
Q ss_pred EEEEccccCCCCceeeEEecCCCCCeEEEEEEEE
Q 004872 589 CVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 622 (726)
Q Consensus 589 ~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 622 (726)
+.++|+++..+.....|++|.+. +|+|++.++|
T Consensus 82 ~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~ 114 (116)
T cd08376 82 CEIDLSALPREQTHSLELELEDG-EGSLLLLLTL 114 (116)
T ss_pred EEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEe
Confidence 99999999988899999999874 6999999887
No 15
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=2.7e-19 Score=162.47 Aligned_cols=107 Identities=27% Similarity=0.435 Sum_probs=97.3
Q ss_pred EEEEEEEeec---CcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCC-----
Q 004872 512 IELVIVEARD---LVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL----- 581 (726)
Q Consensus 512 L~v~v~~a~~---L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~----- 581 (726)
|.|+|++|++ |+++|..|.+||||++.+++++.||+++++++||+|||+|.|.+. ...|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 7899999999 889999999999999999999999999999999999999999984 568999999999874
Q ss_pred -CCCeeEEEEEEccccCCCCceeeEEecCC------CCCeEEEE
Q 004872 582 -ASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHV 618 (726)
Q Consensus 582 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l 618 (726)
+|++||++.+++..+..+.....||+|.. ...|+|++
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 89999999999999999888999999973 34577764
No 16
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.81 E-value=3.8e-19 Score=162.88 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=101.2
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccC-CCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP 555 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP 555 (726)
.|+|.+++.|. +..+.|.|+|++|+||++.+.. |.+||||++++.. .++||+++++++||
T Consensus 1 ~G~i~~sl~Y~--------------~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP 66 (128)
T cd08392 1 TGEIEFALHYN--------------FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP 66 (128)
T ss_pred CcEEEEEEEEe--------------CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence 38999999998 5669999999999999999875 9999999999952 36799999999999
Q ss_pred eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCC---CCceeeEEecC
Q 004872 556 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP---NQMADKWIPLQ 609 (726)
Q Consensus 556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~---~~~~~~w~~L~ 609 (726)
+|||+|.|++. ...|.+.|||++.++++++||++.|+|.++.. +.....||+|.
T Consensus 67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 67 VFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999984 46899999999999999999999999998854 34678999984
No 17
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.81 E-value=3.6e-19 Score=165.44 Aligned_cols=119 Identities=28% Similarity=0.396 Sum_probs=103.9
Q ss_pred ccccccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccc-cCCCCccEEEEEECC-----eEEEeEeee
Q 004872 477 LEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIF 550 (726)
Q Consensus 477 L~~~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~ 550 (726)
+.....|+|.+++.|. .+.|.|+|++|+||++.+ ..|.+||||++++.. .++||++++
T Consensus 12 ~~~~~~G~l~lsl~y~----------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k 75 (146)
T cd04028 12 LASPSMGDIQLGLYDK----------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR 75 (146)
T ss_pred ccCCCcceEEEEEEeC----------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC
Confidence 3444579999999873 288999999999999864 578999999999943 377999999
Q ss_pred CCCCCeeeeEEEEec--CCCeEEEEEE-ECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872 551 KTLNPQWHQTLEFPD--DGSPLTLHVR-DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 611 (726)
Q Consensus 551 ~t~nP~wne~~~f~v--~~~~l~i~V~-d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 611 (726)
+|+||+|||+|.|.+ .+..|.|+|| |++.++++++||++.|+|+++..+.....||+|...
T Consensus 76 ktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 76 KTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 999999999999998 4778999999 688888999999999999999888888999999753
No 18
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.81 E-value=2.4e-19 Score=194.13 Aligned_cols=238 Identities=18% Similarity=0.248 Sum_probs=181.7
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--cEEeeeecCCCCCCcccceeEEEEe
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLH 263 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--~~~rTt~i~~t~nP~WnEtf~~~v~ 263 (726)
--|+|+|.+|+||++.+..|++ ||||.|.+. ++.||.++.+++.|-|.|.|+|.+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~----------------------D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP 62 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMR----------------------DCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIP 62 (800)
T ss_pred cceeEEEeecccCCCCCCCCCc----------------------CcceEEeecchhhhhhhhhhhhcCCccccceEEecC
Confidence 3589999999999999877766 999999995 6799999999999999999999997
Q ss_pred cCCceEEEEEEEeCCCCCCcceeEEEEEeceeccCCCcceeecCCCCccccccccccCceeeeeeecCCccccEEEEEEE
Q 004872 264 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLV 343 (726)
Q Consensus 264 ~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~l~~~l~ 343 (726)
-....|.|.|||.| . .+|+.||.+.|.-.+|...+. .+.|+.+.- +-......|++++++.
T Consensus 63 ~~F~~l~fYv~D~d-~-~~D~~IGKvai~re~l~~~~~-----------~d~W~~L~~------VD~dsEVQG~v~l~l~ 123 (800)
T KOG2059|consen 63 RTFRYLSFYVWDRD-L-KRDDIIGKVAIKREDLHMYPG-----------KDTWFSLQP------VDPDSEVQGKVHLELA 123 (800)
T ss_pred cceeeEEEEEeccc-c-ccccccceeeeeHHHHhhCCC-----------Cccceeccc------cCCChhhceeEEEEEE
Confidence 77899999999999 4 799999999999998886543 223322110 0011123689888875
Q ss_pred eeeeecCCCCCCCCCccCCCCcccccCCccccCCccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEeecccc-
Q 004872 344 LKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK----IVQRTRTA- 418 (726)
Q Consensus 344 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~----~~~kT~~~- 418 (726)
+-+..-+ . -+...+.+++++.+.. ++.+||||++...+ +..+|+++
T Consensus 124 ~~e~~~~--------------------------~--~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~k 174 (800)
T KOG2059|consen 124 LTEAIQS--------------------------S--GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKK 174 (800)
T ss_pred eccccCC--------------------------C--cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceee
Confidence 4321110 1 2455556666776655 46699999999943 34699999
Q ss_pred CCCCCceeeEEEEEeeCC----------------ceeEEEEEEeecC-C-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872 419 HSPNHVWNQKFELDEIGG----------------GECLMVKCYNEEI-F-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 480 (726)
Q Consensus 419 ~t~nP~wne~f~f~v~~~----------------~~~l~i~V~d~~~-~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 480 (726)
++.+|.|+|.|.|.+... ...|.+.+|++.. . ++.|+|++.+++..+........||.|.+.
T Consensus 175 kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~ 254 (800)
T KOG2059|consen 175 KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPR 254 (800)
T ss_pred eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecC
Confidence 999999999999986543 3468899998544 3 799999999999998866677899999763
Q ss_pred c----------cceeEEEEEEEE
Q 004872 481 N----------TGELRLQIEATR 493 (726)
Q Consensus 481 ~----------~G~I~l~~~~~~ 493 (726)
. -|.+++.+.|..
T Consensus 255 ~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 255 PNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred CCcccCCCCCCccceeeeEEeee
Confidence 2 388999998874
No 19
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.81 E-value=3.8e-19 Score=160.47 Aligned_cols=112 Identities=23% Similarity=0.438 Sum_probs=100.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcce
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM 455 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~i 455 (726)
|.|.|+|++|++++..+ .|.+||||++.++++++||+++ + +.||+|||+|.|.+.+....|.|+|||++.+ +|++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 48999999999988776 7999999999999999999998 4 7999999999999877667899999999998 78999
Q ss_pred EEEEEEcc-ccccCCeeeeeeeccc----cccceeEEEEEE
Q 004872 456 GSARVNLE-GLVEGSVRDIWVPLEK----VNTGELRLQIEA 491 (726)
Q Consensus 456 G~~~i~L~-~l~~~~~~~~w~~L~~----~~~G~I~l~~~~ 491 (726)
|.+.+++. .+..+...+.||+|.+ ...|+|+|+++|
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999996 5667777899999987 346999999986
No 20
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=4.1e-19 Score=163.28 Aligned_cols=112 Identities=27% Similarity=0.397 Sum_probs=101.3
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecCC------CeEEEEEEECCCCC-CC
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDHNALL-AS 583 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~~------~~l~i~V~d~d~~~-~d 583 (726)
.|+|+|++|++|++.+..|.+||||++++++++++|+++.+++||+|||.|.|.+.. ..|.|+|||++.++ +|
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 489999999999999988999999999999999999999999999999999999852 46999999999886 89
Q ss_pred CeeEEEEEEccccC-CCCceeeEEecCCC-----CCeEEEEEEEE
Q 004872 584 SSIGDCVVEYQRLP-PNQMADKWIPLQGV-----RKGEIHVLITR 622 (726)
Q Consensus 584 ~~lG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~i~l~l~~ 622 (726)
++||++.++++++. .+.....||+|+.. .+|+|++++.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 99999999999997 56778899999743 57999999976
No 21
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.80 E-value=6.8e-19 Score=161.17 Aligned_cols=114 Identities=27% Similarity=0.467 Sum_probs=104.5
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC---CeEEEeEeeeCCCCCeee
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH 558 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn 558 (726)
.|+|++++.|. +..+.|.|+|++|+||++.+..|.+||||++++. ...++|+++++++||+||
T Consensus 2 ~G~l~~sl~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn 67 (124)
T cd08387 2 RGELHFSLEYD--------------KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67 (124)
T ss_pred CCEEEEEEEEC--------------CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence 59999999987 5669999999999999999999999999999994 346899999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
|+|.|.+. ...|.|+|||++.++++++||++.++++++..+...+.|++|+
T Consensus 68 e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 68 ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred cEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99999974 4589999999999999999999999999998888899999986
No 22
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=3.5e-19 Score=161.58 Aligned_cols=112 Identities=27% Similarity=0.415 Sum_probs=100.8
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeC-CCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 585 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~ 585 (726)
|.|+|+|++|++|+..+..+.+||||++++++.+++|+++.+ ++||+|||.|.|.+. ...|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 689999999999999999999999999999999999998865 799999999999985 467999999999876 899
Q ss_pred eEEEEEEccccCCCCceeeEEecCC--CCCeEEEEEEEE
Q 004872 586 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR 622 (726)
Q Consensus 586 lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~i~l~l~~ 622 (726)
||++.+++.++..+.....|++|.. ...|+|+++++|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 9999999999877767899999975 356999999986
No 23
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.80 E-value=8.2e-19 Score=159.36 Aligned_cols=110 Identities=26% Similarity=0.396 Sum_probs=101.8
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 585 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~ 585 (726)
|+|+|++|++|+..+..+.+||||++++++ .+++|++++++.||+|||+|.|.+. ...|.|+|||+|.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999963 5789999999999999999999984 45699999999998 8999
Q ss_pred eEEEEEEccccCCCCceeeEEecCCCCCeEEEEEEEE
Q 004872 586 IGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 622 (726)
Q Consensus 586 lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 622 (726)
||++.+++.++..+.....|++|....+|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 9999999999999999999999999889999999987
No 24
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=1.4e-18 Score=157.94 Aligned_cols=111 Identities=26% Similarity=0.366 Sum_probs=99.3
Q ss_pred EEEEEEEeecCcccc-cCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872 512 IELVIVEARDLVAAD-LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 512 L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG 587 (726)
|+|.|++|+||++.+ ..|.+||||+|.++++ .++|+++++|+||+|||+|.|.+. ...|.|.|||++.+++|++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 679999999999874 4678999999999775 679999999999999999999995 378999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCCC-----CCeEEEEEEEE
Q 004872 588 DCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR 622 (726)
Q Consensus 588 ~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~ 622 (726)
.+.++++++..+...+.|++|+.. .+|+|++++.|
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999888888999999742 37999999864
No 25
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1.2e-18 Score=163.88 Aligned_cols=112 Identities=24% Similarity=0.445 Sum_probs=100.3
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeC-CCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCee
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSI 586 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~l 586 (726)
.|+|+|++|++|++.+..|.+||||++.+++++.+|+++.+ ++||+|||+|.|.+. ...|.|+|+|++..++|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37999999999999999999999999999999999999977 699999999999984 46899999999998899999
Q ss_pred EEEEEEccccCCC----CceeeEEecCCC-----------CCeEEEEEEEE
Q 004872 587 GDCVVEYQRLPPN----QMADKWIPLQGV-----------RKGEIHVLITR 622 (726)
Q Consensus 587 G~~~i~l~~l~~~----~~~~~w~~L~~~-----------~~G~i~l~l~~ 622 (726)
|++.++|+++..+ ...++||+|.+. .+|+|++.++|
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~ 131 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCL 131 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEe
Confidence 9999999998643 457899999753 24999999999
No 26
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.79 E-value=2e-18 Score=158.08 Aligned_cols=114 Identities=32% Similarity=0.459 Sum_probs=104.0
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeee
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH 558 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn 558 (726)
.|+|.++++|. ...+.|+|+|++|+||+..+..|.+||||++++.+ .+++|+++++++||+||
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn 67 (124)
T cd08385 2 LGKLQFSLDYD--------------FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 67 (124)
T ss_pred ccEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCcee
Confidence 58999999988 56689999999999999999899999999999853 46799999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
|+|.|.+. ...|.|+|||++.++++++||++.++++++..+...+.|++|.
T Consensus 68 e~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 68 ETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999974 4689999999999999999999999999998888899999985
No 27
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.79 E-value=2.7e-18 Score=157.67 Aligned_cols=114 Identities=30% Similarity=0.324 Sum_probs=100.8
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccC-CCCccEEEEEEC---CeEEEeEeeeCCCCCee
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYG---DLKKRTKVIFKTLNPQW 557 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~v~~~t~nP~w 557 (726)
.|+|.+++.|. ...+.|+|+|++|+||+..+.. |.+||||++.+. .++.||+++++++||+|
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~w 67 (128)
T cd08388 2 LGTLFFSLRYN--------------SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVY 67 (128)
T ss_pred CeEEEEEEEEE--------------CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCce
Confidence 59999999988 5678999999999999998876 899999999995 34679999999999999
Q ss_pred eeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCC--CceeeEEecC
Q 004872 558 HQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQ 609 (726)
Q Consensus 558 ne~~~f~-v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~ 609 (726)
||+|.|. ++ ...|.++|||+|.+++|++||++.++|.++... .+...|++|+
T Consensus 68 nE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 68 DETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred eeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999994 42 457999999999999999999999999999644 6788999886
No 28
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.4e-18 Score=158.39 Aligned_cols=112 Identities=32% Similarity=0.626 Sum_probs=102.5
Q ss_pred eEEEEEEEEeecCccccc------CCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCC
Q 004872 510 GWIELVIVEARDLVAADL------RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNAL 580 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~------~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~ 580 (726)
|.|+|+|++|+||+..+. .|.+||||++++++..++|++++++.||+|||+|.|.+. ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 679999999999998874 378999999999999999999999999999999999974 57899999999988
Q ss_pred CCCCeeEEEEEEccccCCCCceeeEEecCCCCCeEEEEEEEE
Q 004872 581 LASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 622 (726)
Q Consensus 581 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 622 (726)
+|++||++.+++.++..+...+.|++|.+...|+|++++++
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 89999999999999987777899999998889999999864
No 29
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.78 E-value=2.2e-18 Score=157.40 Aligned_cols=114 Identities=21% Similarity=0.320 Sum_probs=103.1
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeee
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH 558 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn 558 (726)
.|+|.+++.|. +..+.|.|+|++|+||++.+..|.+||||++.+.. ++++|+++++ +||+||
T Consensus 2 ~G~l~~sl~Y~--------------~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fn 66 (124)
T cd08389 2 CGDLDVAFEYD--------------PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFN 66 (124)
T ss_pred CEEEEEEEEEC--------------CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCccc
Confidence 59999999988 66789999999999999999999999999988733 5789999888 999999
Q ss_pred eEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872 559 QTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 610 (726)
Q Consensus 559 e~~~f~-v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 610 (726)
|+|.|+ +. ...|.++|||++.++++++||++.|+|+++..+.....|++|++
T Consensus 67 E~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 67 ETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 999998 53 57899999999999999999999999999988889999999973
No 30
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=3.1e-18 Score=157.05 Aligned_cols=114 Identities=29% Similarity=0.457 Sum_probs=103.6
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC---CeEEEeEeeeCCCCCeee
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH 558 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn 558 (726)
.|+|+++++|. +..+.|+|+|++|+||+..+..+.+||||++.+. ..+.+|+++++++||.||
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wn 67 (125)
T cd08386 2 LGRIQFSVSYD--------------FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 67 (125)
T ss_pred ccEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccc
Confidence 59999999987 5668999999999999999989999999999993 457899999999999999
Q ss_pred eEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 559 QTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 559 e~~~f~v------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
|+|.|.+ ....|.++|||++.++++++||++.+++.++..+...+.|++|.
T Consensus 68 e~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 68 ETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999974 24579999999999999999999999999999888899999986
No 31
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.78 E-value=2e-18 Score=158.98 Aligned_cols=113 Identities=33% Similarity=0.559 Sum_probs=102.1
Q ss_pred eEEEEEEEEeecCccccc--CCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCC
Q 004872 510 GWIELVIVEARDLVAADL--RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASS 584 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~ 584 (726)
|.|+|+|++|++|+..+. .+.+||||++.+++.+.+|+++++++||.|||+|.|++. ...|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999988 899999999999999999999999999999999999984 678999999999998999
Q ss_pred eeEEEEEEccccC---CCCceeeEEecCCC-------CCeEEEEEEEE
Q 004872 585 SIGDCVVEYQRLP---PNQMADKWIPLQGV-------RKGEIHVLITR 622 (726)
Q Consensus 585 ~lG~~~i~l~~l~---~~~~~~~w~~L~~~-------~~G~i~l~l~~ 622 (726)
+||++.+++.++. .......|++|.+. ..|+|++++++
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999986 33456899999864 47999999864
No 32
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.78 E-value=1.8e-18 Score=156.99 Aligned_cols=111 Identities=19% Similarity=0.323 Sum_probs=98.7
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeCCCCCee
Q 004872 484 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQW 557 (726)
Q Consensus 484 ~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~w 557 (726)
+|.+++.|. +..+.|.|+|++|+||++.+..|.+||||++++.. .++||+++++++||+|
T Consensus 2 ~i~~sL~Y~--------------~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvf 67 (124)
T cd08680 2 QVQIGLRYD--------------SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVF 67 (124)
T ss_pred eEEEEEEEC--------------CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCcc
Confidence 577888876 67799999999999999998889999999999832 3789999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCC-CceeeEEec
Q 004872 558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPL 608 (726)
Q Consensus 558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L 608 (726)
||+|.|+++ +..|.++|||++.++++++||++.|+|.+++.. .....||+|
T Consensus 68 nE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 68 NEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred ccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999984 579999999999999999999999999999654 357889976
No 33
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.78 E-value=3.4e-18 Score=158.76 Aligned_cols=115 Identities=29% Similarity=0.460 Sum_probs=99.8
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC------------CCeEEEEEEEC
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD------------GSPLTLHVRDH 577 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~------------~~~l~i~V~d~ 577 (726)
.+|+|+|++|++|+..|..|.+||||+|++++.+++|+++++|+||.|||+|.|.+. ...|.++|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 378999999999999999999999999999999999999999999999999999741 25699999999
Q ss_pred CCCCCCCeeEEEEE-EccccC---CCCceeeEEecC--CCCCeEEEEEEEEEec
Q 004872 578 NALLASSSIGDCVV-EYQRLP---PNQMADKWIPLQ--GVRKGEIHVLITRKVP 625 (726)
Q Consensus 578 d~~~~d~~lG~~~i-~l~~l~---~~~~~~~w~~L~--~~~~G~i~l~l~~~~p 625 (726)
|..++|++||++.+ ++..+. ......+|++|. +...|+|++++++ ++
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~-~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFEL-IE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEE-EE
Confidence 99999999999987 444443 346788999997 3456999999998 54
No 34
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=2.7e-18 Score=157.43 Aligned_cols=113 Identities=31% Similarity=0.482 Sum_probs=99.5
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 556 (726)
.|+|.+++.|. +..+.|+|+|++|++|+..+..+.+||||++++.+ .+++|+++++++||+
T Consensus 2 ~G~l~~~l~~~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 67 (125)
T cd04031 2 TGRIQIQLWYD--------------KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE 67 (125)
T ss_pred cEEEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCc
Confidence 48999999988 56689999999999999999889999999999964 577999999999999
Q ss_pred eeeEEEEec-C-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 557 WHQTLEFPD-D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 557 wne~~~f~v-~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
|||+|.|.+ . ...|.|+|||++.++++++||++.++|.+.. ......||+|+
T Consensus 68 wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 68 WNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred cccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 999999985 2 4689999999999999999999999999843 33456899985
No 35
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.78 E-value=7.9e-19 Score=161.21 Aligned_cols=94 Identities=29% Similarity=0.597 Sum_probs=88.3
Q ss_pred CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCe
Q 004872 508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS 585 (726)
Q Consensus 508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~ 585 (726)
..|.|+|+|.+|.||..+|..+++||||.+.+++++.||+++++++||+|||.|+|.+. ...|.++|||+|.++.||+
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~ 83 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF 83 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence 46999999999999999999899999999999999999999999999999999999985 6889999999999999999
Q ss_pred eEEEEEEccccCCCCc
Q 004872 586 IGDCVVEYQRLPPNQM 601 (726)
Q Consensus 586 lG~~~i~l~~l~~~~~ 601 (726)
||.+.|+|..+.....
T Consensus 84 mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 84 MGEATIPLKPLLEAQK 99 (168)
T ss_pred cceeeeccHHHHHHhh
Confidence 9999999998876543
No 36
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.78 E-value=3.2e-18 Score=158.02 Aligned_cols=100 Identities=27% Similarity=0.385 Sum_probs=89.3
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCccccc--CCCCccEEEEEECC-----eEEEeEeeeCCCC
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL--RGTSDPYVKVQYGD-----LKKRTKVIFKTLN 554 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~v~~~t~n 554 (726)
.|+|.++++|. +..+.|.|.|++|+||+..+. .+.+||||+|++.. .++||+++++++|
T Consensus 1 ~Gel~~sL~Y~--------------~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n 66 (138)
T cd08407 1 TGEVLLSISYL--------------PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN 66 (138)
T ss_pred CCEEEEEEEEe--------------CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC
Confidence 48999999998 667999999999999999883 35599999999954 2569999999999
Q ss_pred CeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccc
Q 004872 555 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR 595 (726)
Q Consensus 555 P~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~ 595 (726)
|+|||+|.|.++ ...|.|+|||+|.++++++||++.+++..
T Consensus 67 PvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 67 PVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 999999999985 57899999999999999999999999864
No 37
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=1.8e-18 Score=155.62 Aligned_cols=99 Identities=23% Similarity=0.331 Sum_probs=88.2
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEEC-----C--eEEEeEeeeCCCCCeeeeEEEEecCC------CeEEEEEEEC
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYG-----D--LKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDH 577 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~--~~~kT~v~~~t~nP~wne~~~f~v~~------~~l~i~V~d~ 577 (726)
.|+|+|++|++|+..+ .|.+||||+|++. . ++++|+++.+|+||+|||+|.|.+.. ..|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999887 4999999999983 2 35689999999999999999999852 3599999999
Q ss_pred CCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872 578 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 610 (726)
Q Consensus 578 d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 610 (726)
|..++|++||++.+++.++..++....|++|+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 988889999999999999999888999999974
No 38
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.77 E-value=5.2e-18 Score=156.00 Aligned_cols=114 Identities=23% Similarity=0.433 Sum_probs=103.4
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~ 556 (726)
.|+|.+++.|. +..+.|+|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||+
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~ 67 (127)
T cd04030 2 LGRIQLTIRYS--------------SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV 67 (127)
T ss_pred CeEEEEEEEEe--------------CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCE
Confidence 58999999988 5669999999999999999998999999999995 3578999999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCC--CCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 557 WHQTLEFPDD-----GSPLTLHVRDHNAL--LASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 557 wne~~~f~v~-----~~~l~i~V~d~d~~--~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
|||+|.|.+. ...|.+.|||++.+ +++++||++.++|.++..+.....||+|+
T Consensus 68 wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 68 FDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9999999984 46899999999986 68999999999999998888889999984
No 39
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.77 E-value=3.1e-18 Score=154.96 Aligned_cols=109 Identities=25% Similarity=0.433 Sum_probs=96.0
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 557 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 557 (726)
|+|+++++|. .+.|.|+|++|+||++.+ .|.+||||++++.. .++||+++++++||+|
T Consensus 1 G~l~l~~~~~----------------~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~ 63 (119)
T cd08685 1 GQLKLSIEGQ----------------NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLF 63 (119)
T ss_pred CEEEEEEEEc----------------CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCcc
Confidence 7888888763 388999999999999998 88999999999954 3669999999999999
Q ss_pred eeEEEEecC----CCeEEEEEEECCCCC-CCCeeEEEEEEccccCCCCceeeEEec
Q 004872 558 HQTLEFPDD----GSPLTLHVRDHNALL-ASSSIGDCVVEYQRLPPNQMADKWIPL 608 (726)
Q Consensus 558 ne~~~f~v~----~~~l~i~V~d~d~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L 608 (726)
||+|.|.+. ...|.++|||++..+ ++++||++.+++.++..+...+.||.|
T Consensus 64 nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 64 HETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred ccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 999999984 357999999999876 478999999999999888788999986
No 40
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.77 E-value=4.8e-18 Score=155.30 Aligned_cols=112 Identities=29% Similarity=0.457 Sum_probs=101.3
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccc-cCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 556 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 556 (726)
|+|.++++|. ...+.|.|+|++|+||+..+ ..+.+||||++++.+ .+.+|+++++++||+
T Consensus 1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (123)
T cd08521 1 GEIEFSLSYN--------------YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV 66 (123)
T ss_pred CeEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCc
Confidence 8899999987 56699999999999999988 788999999999842 467999999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872 557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608 (726)
Q Consensus 557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 608 (726)
|||+|.|.+. ...|.|+|||++.++++++||++.++|+++..+...+.||+|
T Consensus 67 wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 67 FNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999974 458999999999999999999999999999877788999987
No 41
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=8.2e-18 Score=154.34 Aligned_cols=109 Identities=25% Similarity=0.367 Sum_probs=99.0
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECC--eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG 587 (726)
|.|+|++|+||+. ..|.+||||+++++. ++++|+++++++||+|||.|.|.+. ...|.|+|||++..++|++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999988 678999999999974 5789999999999999999999985 578999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCCC------CCeEEEEEEEE
Q 004872 588 DCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR 622 (726)
Q Consensus 588 ~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~ 622 (726)
++.+++..+..+.....|++|.+. ..|+|.+++.|
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~ 119 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLF 119 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEE
Confidence 999999999887778899999743 47999999999
No 42
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.77 E-value=4.8e-18 Score=157.02 Aligned_cols=99 Identities=25% Similarity=0.362 Sum_probs=89.7
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 557 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 557 (726)
|+|.++++|. +..+.|.|+|++|+||+..+..|.+||||++++.. .++||+++++++||+|
T Consensus 2 G~i~~sL~Y~--------------~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~ 67 (136)
T cd08406 2 GEILLSLSYL--------------PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIF 67 (136)
T ss_pred cEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCee
Confidence 8999999988 56689999999999999999999999999999932 2668999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccc
Q 004872 558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR 595 (726)
Q Consensus 558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~ 595 (726)
||+|.|.++ ...|.|+|||+|.++++++||++.++...
T Consensus 68 nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 68 NEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred ceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 999999984 57899999999999999999999998653
No 43
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.4e-17 Score=152.67 Aligned_cols=110 Identities=24% Similarity=0.426 Sum_probs=96.3
Q ss_pred ceEEEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecCC---CeEEEEEEECCCCCCCC
Q 004872 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVRDHNALLASS 584 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V~d~d~~~~d~ 584 (726)
...|+|+|++|+||+.. +.+||||+|.+++. ..+|++. +++||.|||+|.|.+.. ..+.|.|||++..++|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 35799999999999874 47899999999875 4688874 68999999999998632 57999999999999999
Q ss_pred eeEEEEEEccccCCCCceeeEEecCCC------CCeEEEEEEEE
Q 004872 585 SIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR 622 (726)
Q Consensus 585 ~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~ 622 (726)
+||++.++|..+..+...+.|++|.+. ..|+|+++++|
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~ 122 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARY 122 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEE
Confidence 999999999999988888999999753 34999999999
No 44
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.76 E-value=9.4e-18 Score=153.37 Aligned_cols=110 Identities=30% Similarity=0.518 Sum_probs=99.0
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG 587 (726)
+|+|+|++|++|+..+..+.+||||++++++.+.+|+++++++||.|||+|.|.+. ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 48999999999999998899999999999999999999999999999999999985 367999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCC---------CCCeEEEEEE
Q 004872 588 DCVVEYQRLPPNQMADKWIPLQG---------VRKGEIHVLI 620 (726)
Q Consensus 588 ~~~i~l~~l~~~~~~~~w~~L~~---------~~~G~i~l~l 620 (726)
++.+++.++..+.....|+.|.. ...|.|++.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999987777789999963 2358888765
No 45
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=8.8e-18 Score=155.82 Aligned_cols=112 Identities=30% Similarity=0.443 Sum_probs=99.0
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECCe-------EEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCC
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL 581 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~ 581 (726)
.|+|+|++|++|+..+..|.+||||++++++. +++|+++++|+||.|||+|.|.+. ...|.++|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 37999999999999998899999999999654 579999999999999999999984 567999999999999
Q ss_pred CCCeeEEEEEEccccCCCC------ceeeEEecCC-----CCCeEEEEEEEE
Q 004872 582 ASSSIGDCVVEYQRLPPNQ------MADKWIPLQG-----VRKGEIHVLITR 622 (726)
Q Consensus 582 ~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~-----~~~G~i~l~l~~ 622 (726)
+|++||++.+++.++..+. ....||+|++ ...|+|++++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 9999999999999987543 3569999974 347999999987
No 46
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.76 E-value=1.7e-17 Score=151.72 Aligned_cols=113 Identities=24% Similarity=0.317 Sum_probs=102.5
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccc-cCCCCccEEEEEEC---CeEEEeEeeeCCCCCeee
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH 558 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn 558 (726)
|+|.+++.|. +..+.|.|+|++|+||+..+ ..+.+||||++++. ....+|+++++++||+||
T Consensus 1 G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wn 66 (123)
T cd08390 1 GRLWFSVQYD--------------LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFD 66 (123)
T ss_pred CEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccc
Confidence 8899999987 56689999999999999998 68899999999984 356799999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
|+|.|.+. ...|.|+|||++..+++++||++.++|+++........|++|+
T Consensus 67 e~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 67 ETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999985 3589999999999989999999999999998888889999986
No 47
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.75 E-value=9.9e-18 Score=159.99 Aligned_cols=127 Identities=25% Similarity=0.398 Sum_probs=107.2
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~ 556 (726)
.|+|.++++|.+....... .......|.|+|+|++|+||+..+..|.+||||++++. ..+++|+++++++||.
T Consensus 1 ~G~l~~~l~y~~~~~~~~~--~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~ 78 (162)
T cd04020 1 RGELKVALKYVPPESEGAL--KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPV 78 (162)
T ss_pred CceEEEEEEecCccccccc--cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCC
Confidence 4899999999965432111 12335679999999999999999989999999999983 3578999999999999
Q ss_pred eeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872 557 WHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 610 (726)
Q Consensus 557 wne~~~f~v------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 610 (726)
|||+|.|.+ ....|.|+|||++.+++|++||++.+++..+......+.|++|.+
T Consensus 79 WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999999984 235799999999999999999999999999987777889999875
No 48
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=2e-17 Score=150.33 Aligned_cols=111 Identities=27% Similarity=0.540 Sum_probs=100.7
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG 587 (726)
|.|+|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|++. ...+.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 689999999999999999999999999999998999999999999999999999984 578999999999988999999
Q ss_pred EEEEEccccCCCCceeeEEecCC-----CCCeEEEEEEEE
Q 004872 588 DCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR 622 (726)
Q Consensus 588 ~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~ 622 (726)
++.+++.++..+. ..|++|.. ..+|+|++++++
T Consensus 81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999987653 58999964 247999999986
No 49
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.75 E-value=2.5e-17 Score=156.65 Aligned_cols=113 Identities=26% Similarity=0.451 Sum_probs=99.9
Q ss_pred ceEEEEEEEEeecCcccc------------------------------cCCCCccEEEEEECCeE-EEeEeeeCCCCCee
Q 004872 509 NGWIELVIVEARDLVAAD------------------------------LRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQW 557 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~w 557 (726)
.|.|.|+|++|++|+++| ..|.+||||+|++++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 489999999999999887 35778999999998865 69999999999999
Q ss_pred eeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC------CCCeEEEEEEEE
Q 004872 558 HQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHVLITR 622 (726)
Q Consensus 558 ne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l~l~~ 622 (726)
||+|.|.+. ...|.|+|||+|.++ +++||++.++++++..+...+.|++|.+ ...|+|+++++|
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999974 568999999999875 6899999999999988888999999964 235899999987
No 50
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.75 E-value=7.9e-18 Score=154.51 Aligned_cols=110 Identities=28% Similarity=0.510 Sum_probs=97.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC------CceeEEEEEEeecCC-CC
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG------GGECLMVKCYNEEIF-GD 452 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~------~~~~l~i~V~d~~~~-~d 452 (726)
++|+|++|+||..++..|.+||||++++++..+||+++ ++.||+|||.|.|.+.. ....|.|.|||++.. +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999989999999999999999999999 99999999999999866 367899999999987 79
Q ss_pred cceEEEEEEccccc--cCCeeeeeeecccc------ccceeEEEEE
Q 004872 453 ENMGSARVNLEGLV--EGSVRDIWVPLEKV------NTGELRLQIE 490 (726)
Q Consensus 453 ~~iG~~~i~L~~l~--~~~~~~~w~~L~~~------~~G~I~l~~~ 490 (726)
++||++.++|+++. .+.....||+|.+. ..|+|+++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 45567899999752 3588888763
No 51
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=1.3e-17 Score=151.62 Aligned_cols=107 Identities=31% Similarity=0.565 Sum_probs=94.8
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG 587 (726)
.|.|+|++|+||+.. .+||||++.+++.+.+|+++++++||+|||+|.|.+. ...|.++|||++.. ++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 378999999999887 7899999999999999999999999999999999984 57899999999987 789999
Q ss_pred EEEEEccccCCCC-----ceeeEEecCCC----CCeEEEEEEEE
Q 004872 588 DCVVEYQRLPPNQ-----MADKWIPLQGV----RKGEIHVLITR 622 (726)
Q Consensus 588 ~~~i~l~~l~~~~-----~~~~w~~L~~~----~~G~i~l~l~~ 622 (726)
++.++++++..+. ...+||+|.+. .+|+|++++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999986532 35799999764 35999999987
No 52
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=1.5e-17 Score=151.01 Aligned_cols=100 Identities=27% Similarity=0.394 Sum_probs=93.3
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-----
Q 004872 380 KINVTVVEGKD---LMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF----- 450 (726)
Q Consensus 380 ~L~V~V~~a~~---L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~----- 450 (726)
.|.|+|++|++ |..+|..|.+||||++.++++.+||+++ ++.||+|||+|.|.+.+....|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 38999999999 8888999999999999999999999999 99999999999999887777999999999875
Q ss_pred --CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872 451 --GDENMGSARVNLEGLVEGSVRDIWVPLEK 479 (726)
Q Consensus 451 --~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 479 (726)
+|++||++.+++.++..+.....||+|..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 79999999999999998888899999985
No 53
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=2.6e-17 Score=149.80 Aligned_cols=110 Identities=30% Similarity=0.503 Sum_probs=97.6
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEE
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGD 588 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG~ 588 (726)
|.|+|++|++|++.+..|.+||||++.+++. ..+|+++++++||+|||.|.|.+. ...|.|+|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 7899999999999999999999999999875 469999999999999999999985 3689999999999999999999
Q ss_pred EEEEccccCCC-CceeeEEecCCC-----CCeEEEEEEE
Q 004872 589 CVVEYQRLPPN-QMADKWIPLQGV-----RKGEIHVLIT 621 (726)
Q Consensus 589 ~~i~l~~l~~~-~~~~~w~~L~~~-----~~G~i~l~l~ 621 (726)
+.++++.+..+ ...+.|++|.+. ..|+|+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999888653 347899999753 3799998875
No 54
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.74 E-value=5.1e-18 Score=155.92 Aligned_cols=92 Identities=16% Similarity=0.347 Sum_probs=85.8
Q ss_pred cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc-EEeeeecCCCCCCcccceeEEEE
Q 004872 184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVL 262 (726)
Q Consensus 184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~-~~rTt~i~~t~nP~WnEtf~~~v 262 (726)
..|.|+|+|.+|.||..+|+.|+| ||||++++|+ ..||+++++++||+|||.|.|.+
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sS----------------------DPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v 61 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSS----------------------DPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTV 61 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCC----------------------CCeEEEEECCeeeeeeeecCCCCCcccceEEEEe
Confidence 569999999999999999987765 9999999984 57888999999999999999999
Q ss_pred ecCCceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872 263 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 298 (726)
Q Consensus 263 ~~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~ 298 (726)
.+.+..|.+.|||+|.+ ++||+||.|+|+|+.+..
T Consensus 62 ~d~~~~lkv~VyD~D~f-s~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 62 KDPNTPLKVTVYDKDTF-SSDDFMGEATIPLKPLLE 96 (168)
T ss_pred cCCCceEEEEEEeCCCC-CcccccceeeeccHHHHH
Confidence 99999999999999998 899999999999998875
No 55
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.74 E-value=5.5e-17 Score=150.18 Aligned_cols=112 Identities=28% Similarity=0.474 Sum_probs=101.1
Q ss_pred ceEEEEEEEEeecCccccc----------CCCCccEEEEEECCeE-EEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEE
Q 004872 509 NGWIELVIVEARDLVAADL----------RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRD 576 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d~----------~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d 576 (726)
.|.|+|+|++|++|+..+. .|.+||||++.+++++ .+|+++++++||.|||+|.|.+. ...|.|+|||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d 82 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFH 82 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEe
Confidence 4889999999999998875 3689999999998865 69999999999999999999995 6789999999
Q ss_pred CCCCCCCCeeEEEEEEccccCC--CCceeeEEecCCCCCeEEEEEEEE
Q 004872 577 HNALLASSSIGDCVVEYQRLPP--NQMADKWIPLQGVRKGEIHVLITR 622 (726)
Q Consensus 577 ~d~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~G~i~l~l~~ 622 (726)
++.++++++||++.++|.++.. +...+.|++|+ +.|+|++++++
T Consensus 83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~ 128 (132)
T cd04014 83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIEL 128 (132)
T ss_pred CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEE
Confidence 9999999999999999999876 56789999998 57999999998
No 56
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.74 E-value=1.5e-17 Score=155.68 Aligned_cols=98 Identities=27% Similarity=0.314 Sum_probs=87.7
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC------------------C
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD------------------G 567 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~------------------~ 567 (726)
.|+|+|++|+||+. .+|.+||||+|++.+ .+.+|+++++|+||+|||+|.|.+. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999998 578999999999966 5779999999999999999999983 2
Q ss_pred CeEEEEEEECCCCCCCCeeEEEEEEccccCCC-CceeeEEecCC
Q 004872 568 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQG 610 (726)
Q Consensus 568 ~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~ 610 (726)
..|.|+|||++.+++|+|||++.|++..+..+ .....||+|+.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 46999999999988999999999999999876 67789999964
No 57
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.73 E-value=5.1e-17 Score=146.89 Aligned_cols=112 Identities=27% Similarity=0.505 Sum_probs=102.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcceE
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 456 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~iG 456 (726)
+++|+|++|++|+.++..+.+||||++++++..++|+++ ++.||.|||.|.|.+.+. ...|.|+|||++.. ++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 378999999999999988999999999999999999999 999999999999998775 68899999999987 899999
Q ss_pred EEEEEccccccCCeeeeeeeccccccceeEEEEEEE
Q 004872 457 SARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 492 (726)
Q Consensus 457 ~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~~ 492 (726)
++.+++.++..+.....|++|.+. .|+|++.+.|.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 999999999888888999999874 69999988764
No 58
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.73 E-value=4.5e-17 Score=148.40 Aligned_cols=112 Identities=32% Similarity=0.537 Sum_probs=102.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceEE
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGS 457 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG~ 457 (726)
|.|+|++|++|+..+..|.+||||++++++ ..++|+++ ++.||.|||.|.|.+......|.|+|||++.. ++++||.
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~ 81 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGS 81 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEE
Confidence 899999999999999899999999999965 68999999 99999999999999876678899999999998 8999999
Q ss_pred EEEEccccccCCeeeeeeeccccc----cceeEEEEEEE
Q 004872 458 ARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEAT 492 (726)
Q Consensus 458 ~~i~L~~l~~~~~~~~w~~L~~~~----~G~I~l~~~~~ 492 (726)
+.+++.++..+.....|++|.+.+ .|+|.+.+++.
T Consensus 82 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 82 AFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999888888999997543 59999999875
No 59
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=2.4e-17 Score=149.54 Aligned_cols=113 Identities=22% Similarity=0.407 Sum_probs=100.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCCcce
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM 455 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~i 455 (726)
|.|.|+|.+|++|+..+..+.+||||++++++..++|+++ + +.||.|||.|.|.+..+ ...|.|+|||++..++++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 4799999999999999989999999999999899999988 4 78999999999998764 6789999999987678999
Q ss_pred EEEEEEccccccCCeeeeeeecccc--ccceeEEEEEE
Q 004872 456 GSARVNLEGLVEGSVRDIWVPLEKV--NTGELRLQIEA 491 (726)
Q Consensus 456 G~~~i~L~~l~~~~~~~~w~~L~~~--~~G~I~l~~~~ 491 (726)
|++.+++.++..+.....||+|... ..|+|+++++|
T Consensus 81 G~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 9999999998877667899999864 36999999875
No 60
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=4.7e-17 Score=148.26 Aligned_cols=113 Identities=30% Similarity=0.552 Sum_probs=102.3
Q ss_pred cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC
Q 004872 379 RKINVTVVEGKDLMPKDK------SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF 450 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~------~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~ 450 (726)
|.|.|+|.+|+||+..+. .|.+||||++++++..++|+++ ++.||.|||.|.|.+.. ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 479999999999998774 3689999999999899999999 99999999999999865 477899999999877
Q ss_pred CCcceEEEEEEccccccCCeeeeeeeccccccceeEEEEEE
Q 004872 451 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 491 (726)
Q Consensus 451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~ 491 (726)
++++||.+.+++.++..+.....||+|.+...|+|+++++|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 88999999999999988777889999998888999999876
No 61
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.72 E-value=5.2e-17 Score=147.67 Aligned_cols=99 Identities=23% Similarity=0.327 Sum_probs=86.8
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCC-CCe
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTL-NPQ 556 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~-nP~ 556 (726)
.+|.++++|. +..++|+|+|++|+||++.+..+.+||||+|++.. .++||+++++|+ ||+
T Consensus 1 ~el~~sL~Y~--------------p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~ 66 (135)
T cd08692 1 AELQLGTCFQ--------------AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVK 66 (135)
T ss_pred CeEEEEeeec--------------CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCce
Confidence 3788999988 67799999999999999987677889999999832 478999999996 699
Q ss_pred eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEccc
Q 004872 557 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQR 595 (726)
Q Consensus 557 wne~~~f~v~----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~ 595 (726)
|||+|.|+++ +..|.++|||++..+++++||++.++.+.
T Consensus 67 fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 67 WGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred ecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence 9999999985 45789999999999999999999999865
No 62
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=3.4e-17 Score=146.39 Aligned_cols=99 Identities=30% Similarity=0.583 Sum_probs=90.0
Q ss_pred EEEEEEEeecCccccc-CCCCccEEEEEECCeEEEeEeeeCCCCCee-eeEEEEecC-----CCeEEEEEEECCCCCCCC
Q 004872 512 IELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQW-HQTLEFPDD-----GSPLTLHVRDHNALLASS 584 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~w-ne~~~f~v~-----~~~l~i~V~d~d~~~~d~ 584 (726)
|.|+|++|++|+.++. .|.+||||++++++.++||+++++++||.| ||+|.|.+. ...|.|+|||++.+++|+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999999884 789999999999999999999999999999 999999985 368999999999999999
Q ss_pred eeEEEEEEccccCC---CCceeeEEecCC
Q 004872 585 SIGDCVVEYQRLPP---NQMADKWIPLQG 610 (726)
Q Consensus 585 ~lG~~~i~l~~l~~---~~~~~~w~~L~~ 610 (726)
+||++.+++.++.. +...+.||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999966 456889999864
No 63
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=7.8e-17 Score=147.50 Aligned_cols=116 Identities=31% Similarity=0.395 Sum_probs=100.2
Q ss_pred ceEEEEEEEEeecCcccc-cCCCCccEEEEEECC--eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCC
Q 004872 509 NGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLAS 583 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d 583 (726)
.|.|+|+|++|++|+..+ ..+.+||||++.+++ ..++|+++.++.||.|||.|.|.+. ...|.|+|||++..++|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 378999999999999755 456799999999987 7899999999999999999999974 67899999999999899
Q ss_pred CeeEEEEEEccccCCCCcee-eEEec--CCCCCeEEEEEEEEEec
Q 004872 584 SSIGDCVVEYQRLPPNQMAD-KWIPL--QGVRKGEIHVLITRKVP 625 (726)
Q Consensus 584 ~~lG~~~i~l~~l~~~~~~~-~w~~L--~~~~~G~i~l~l~~~~p 625 (726)
++||++.+++.++..+.... .|+.+ .++..|+|+++++| .|
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~-~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRF-FP 124 (124)
T ss_pred ceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEe-CC
Confidence 99999999999998766554 34444 45678999999998 54
No 64
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.72 E-value=8.2e-17 Score=149.83 Aligned_cols=112 Identities=27% Similarity=0.452 Sum_probs=95.7
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 556 (726)
.|+|.+++.|. +..+.|+|+|++|++|+..+..|.+||||+|++.+ .+++|+++++++||.
T Consensus 1 ~G~l~~~l~y~--------------~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 66 (136)
T cd08402 1 LGDICFSLRYV--------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY 66 (136)
T ss_pred CcEEEEEeEEc--------------CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCc
Confidence 38999999988 67799999999999999999999999999999942 357899999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
|||+|.|.+. ...|.|+|||++.+++|++||++.+++... +.....|+++.
T Consensus 67 wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~ 122 (136)
T cd08402 67 YNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDML 122 (136)
T ss_pred ccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHH
Confidence 9999999985 247999999999999999999999999764 33344555543
No 65
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.71 E-value=4.9e-17 Score=144.12 Aligned_cols=98 Identities=23% Similarity=0.398 Sum_probs=88.8
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG 587 (726)
.|.|+|++|++|+..+..+.+||||++++++++++|++++++.||+|||+|.|.+. .+.|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 37899999999999998999999999999999999999999999999999999985 4679999999986 78999
Q ss_pred EEEEEccccCCC--CceeeEEecCCC
Q 004872 588 DCVVEYQRLPPN--QMADKWIPLQGV 611 (726)
Q Consensus 588 ~~~i~l~~l~~~--~~~~~w~~L~~~ 611 (726)
++.++|.++... ...+.||+|.+.
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCCC
Confidence 999999998654 367899999863
No 66
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.71 E-value=1.2e-16 Score=148.00 Aligned_cols=113 Identities=23% Similarity=0.492 Sum_probs=101.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcce
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENM 455 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~i 455 (726)
|.|.|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.||+.|.|.+.+. ...|.|+|||++.. +|++|
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~l 94 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFL 94 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCee
Confidence 5899999999999999989999999999999999999999 999999999999998764 57899999999987 78999
Q ss_pred EEEEEEcccccc-----CCeeeeeeeccccccceeEEEEEE
Q 004872 456 GSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEA 491 (726)
Q Consensus 456 G~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~I~l~~~~ 491 (726)
|++.+++.++.. ......|..+.+...|+|++++.+
T Consensus 95 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 95 GRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred EEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 999999999986 334567888888888999999865
No 67
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.5e-16 Score=146.33 Aligned_cols=109 Identities=28% Similarity=0.453 Sum_probs=98.3
Q ss_pred EEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEE
Q 004872 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCV 590 (726)
Q Consensus 516 v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~ 590 (726)
|++|++|+. ..|.+||||++++++.+++|++++++.||+|||+|.|++. ...|.|+|||++..++|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999998 6789999999999999999999999999999999999983 578999999999999999999999
Q ss_pred EEccccCCCCceeeEEecCCC----CCeEEEEEEEEEecCc
Q 004872 591 VEYQRLPPNQMADKWIPLQGV----RKGEIHVLITRKVPEL 627 (726)
Q Consensus 591 i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~l~~~~p~~ 627 (726)
++++++..+.....|++|.+. .+|+|+++++| .|.+
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~-~~~~ 119 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSY-QPPD 119 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEE-eCCC
Confidence 999999988888999999632 35999999999 6544
No 68
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.71 E-value=9.1e-17 Score=149.10 Aligned_cols=112 Identities=26% Similarity=0.450 Sum_probs=93.4
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 557 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 557 (726)
|+|.++++|. +..+.|+|+|++|++|+..+..|.+||||++++.. .+++|+++++|+||+|
T Consensus 1 G~i~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~w 66 (135)
T cd08410 1 GELLLSLNYL--------------PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFY 66 (135)
T ss_pred CcEEEEEEEC--------------CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCcc
Confidence 8999999988 66799999999999999999999999999999832 3579999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
||+|.|.+. ...|.|+|||+|..+++++||++.+....... ...+.|+.+.
T Consensus 67 nE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~ 122 (135)
T cd08410 67 NESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRML 122 (135)
T ss_pred ceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHH
Confidence 999999984 34699999999999999999999876543322 1235565554
No 69
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=5.5e-17 Score=152.06 Aligned_cols=105 Identities=23% Similarity=0.422 Sum_probs=92.1
Q ss_pred EEEEEEEEeecCcccccCC--------------CCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC----CCeEEE
Q 004872 511 WIELVIVEARDLVAADLRG--------------TSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTL 572 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g--------------~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i 572 (726)
.|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|++. ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999988543 7899999999999999999999999999999999962 468999
Q ss_pred EEEECCCCCCCCeeEEEEEEccccCCCCc-------eeeEEecCCCCCeE
Q 004872 573 HVRDHNALLASSSIGDCVVEYQRLPPNQM-------ADKWIPLQGVRKGE 615 (726)
Q Consensus 573 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~~~~~G~ 615 (726)
+|||+|..++|++||++.+++.++..... ...|+.|.+.++|.
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 99999999999999999999998865442 36899998877764
No 70
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=1.1e-16 Score=148.99 Aligned_cols=111 Identities=32% Similarity=0.467 Sum_probs=94.7
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC--C---eEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~ 556 (726)
.|+|.++++|. +..+.|.|+|++|+||+..+..|.+||||++.+. + .+.+|+++++++||+
T Consensus 1 ~G~l~~sl~y~--------------~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (136)
T cd08405 1 RGELLLSLCYN--------------PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66 (136)
T ss_pred CcEEEEEEEEc--------------CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence 48999999998 5669999999999999999989999999999983 2 357899999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872 557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608 (726)
Q Consensus 557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 608 (726)
|||+|.|.+. ...|.|+|||++.++++++||++.+++... +.....|+++
T Consensus 67 wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~ 121 (136)
T cd08405 67 FNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDM 121 (136)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHH
Confidence 9999999974 457999999999999999999999999865 2233444444
No 71
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.71 E-value=1.2e-16 Score=148.42 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=89.8
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeCCCCCe
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQ 556 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~ 556 (726)
|+|.+++.|. +..+.|.|+|++|+||+..+..|.+||||++++.. .++||+++++++||+
T Consensus 2 ~ei~~sL~Y~--------------~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv 67 (138)
T cd08408 2 PELLLGLEYN--------------ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE 67 (138)
T ss_pred CeEEEEeEEc--------------CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCc
Confidence 6888999887 66799999999999999999999999999999942 256999999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcccc
Q 004872 557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL 596 (726)
Q Consensus 557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l 596 (726)
|||+|.|+++ ...|.|+|||++.++++++||++.+++...
T Consensus 68 fnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 68 FKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 9999999984 468999999999999999999999998744
No 72
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.71 E-value=3.8e-17 Score=152.08 Aligned_cols=113 Identities=27% Similarity=0.392 Sum_probs=98.3
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 556 (726)
.|+|.++++|. +..+.|.|+|++|+||+..+..|.+||||++++.+ .+.+|+++++++||.
T Consensus 1 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~ 66 (136)
T cd08404 1 RGELLLSLCYQ--------------PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV 66 (136)
T ss_pred CCeEEEEEEEe--------------CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCc
Confidence 48999999987 45689999999999999999999999999999842 256899999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872 557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 610 (726)
Q Consensus 557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 610 (726)
|||+|.|.+. ...|.|+|||+|.++++++||++.+++.. .+.....|++|..
T Consensus 67 w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 67 FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred cCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 9999999984 45789999999999999999999999988 3455677887753
No 73
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.71 E-value=1.8e-16 Score=145.56 Aligned_cols=110 Identities=23% Similarity=0.380 Sum_probs=97.6
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecCC---CeEEEEEEECCCCCCCC
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVRDHNALLASS 584 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V~d~d~~~~d~ 584 (726)
.|+|+|++|++|+..+..+.+||||++.+++ ...+|+++++++||.|||+|.|.+.. ..|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999999999999999999864 36799999999999999999999853 68999999999988999
Q ss_pred eeEEEEEEccccCC---CCceeeEEecCCCCCeEEEEEEEE
Q 004872 585 SIGDCVVEYQRLPP---NQMADKWIPLQGVRKGEIHVLITR 622 (726)
Q Consensus 585 ~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~G~i~l~l~~ 622 (726)
+||++.++|..+.. +...+.|++|.+ .|+|++++.+
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~ 120 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSM 120 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEE
Confidence 99999999987532 446789999985 7999999988
No 74
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.70 E-value=1.4e-16 Score=146.73 Aligned_cols=113 Identities=31% Similarity=0.517 Sum_probs=101.0
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC-CCc
Q 004872 379 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDE 453 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~--~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~ 453 (726)
|.|.|+|++|++|+..+. .+.+||||++++++..++|+++ ++.||.|||.|.|.+.+ ....|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 489999999999998888 8899999999999999999999 99999999999999887 477899999999987 889
Q ss_pred ceEEEEEEcccccc---CCeeeeeeecccc-------ccceeEEEEEE
Q 004872 454 NMGSARVNLEGLVE---GSVRDIWVPLEKV-------NTGELRLQIEA 491 (726)
Q Consensus 454 ~iG~~~i~L~~l~~---~~~~~~w~~L~~~-------~~G~I~l~~~~ 491 (726)
+||++.+++.++.. ......||+|.+. .+|+|.+++.|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999999973 3346799999875 37999998876
No 75
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.70 E-value=1.6e-16 Score=149.52 Aligned_cols=112 Identities=28% Similarity=0.447 Sum_probs=99.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcceE
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 456 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~iG 456 (726)
|.|+|++|++|+.++.+|.+||||+++++++.++|+++ + +.||.|||.|.|.+.++ ...+.|+|||++.. ++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 89999999999999999999999999999999999999 6 69999999999998764 56899999999887 899999
Q ss_pred EEEEEccccccC----Ceeeeeeeccccc-----------cceeEEEEEEE
Q 004872 457 SARVNLEGLVEG----SVRDIWVPLEKVN-----------TGELRLQIEAT 492 (726)
Q Consensus 457 ~~~i~L~~l~~~----~~~~~w~~L~~~~-----------~G~I~l~~~~~ 492 (726)
++.++|.++..+ .....||+|.+.. +|+|+|++.+.
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 999999998743 3468999998643 38999999876
No 76
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.70 E-value=1.9e-16 Score=143.78 Aligned_cols=111 Identities=23% Similarity=0.337 Sum_probs=100.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCCcce
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM 455 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~i 455 (726)
|.|+|++|++|+..+..+.+||||+++++ ...+||+++ ++.||.|||+|.|.+... ...|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 78999999999998888999999999994 468899999 999999999999997664 5679999999987788999
Q ss_pred EEEEEEccccccCCeeeeeeeccccccceeEEEEEE
Q 004872 456 GSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 491 (726)
Q Consensus 456 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~ 491 (726)
|++.+++.++..+.....|++|.+.++|++.+++..
T Consensus 82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 999999999988888899999999888999998864
No 77
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=9e-17 Score=142.67 Aligned_cols=96 Identities=15% Similarity=0.230 Sum_probs=80.2
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-cEEeeeecCCCCCCcccceeEEEEec
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVLHE 264 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~~~rTt~i~~t~nP~WnEtf~~~v~~ 264 (726)
|+|.|+|++|++|+..+..+. .+..+||||+|+++ ...||++++++.||+|||+|.|.+.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~------------------~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~ 62 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR------------------TGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP 62 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC------------------CCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeC
Confidence 899999999999998764211 01113999999997 56789999999999999999999865
Q ss_pred C--CceEEEEEEEeCCCCCCcceeEEEEEeceeccCCC
Q 004872 265 E--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300 (726)
Q Consensus 265 ~--~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~ 300 (726)
. ...|.|+|||+|.. ++|++||++.++|++|....
T Consensus 63 ~~~~~~L~~~V~D~d~~-~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 63 HEKNFDIQFKVLDKDKF-SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ccCCCEEEEEEEECCCC-CCCcceEEEEEEHHHHHhhC
Confidence 4 45899999999986 78999999999999998644
No 78
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.70 E-value=5.9e-17 Score=150.62 Aligned_cols=111 Identities=20% Similarity=0.343 Sum_probs=94.3
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 557 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 557 (726)
|+|.+++.|. +..+.|.|+|++|+||+..+ .+.+||||++++.. .+++|++++++.||+|
T Consensus 2 G~i~~sl~y~--------------~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~f 66 (137)
T cd08409 2 GDIQISLTYN--------------PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSF 66 (137)
T ss_pred cEEEEEEEEC--------------CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcc
Confidence 8999999988 56699999999999999988 78899999999843 3669999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872 558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608 (726)
Q Consensus 558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 608 (726)
||+|.|.++ ...|.|+|||++..+++++||++.++......+...+.|..+
T Consensus 67 nE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 67 NESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred cceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence 999999984 468999999999999999999999987655444444445444
No 79
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.70 E-value=1.7e-16 Score=146.77 Aligned_cols=118 Identities=31% Similarity=0.484 Sum_probs=105.3
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 556 (726)
+|+|+|+++|. .+.|+|+|++|++|+..+..+.+||||+|.+.+ ..++|++++++.||.
T Consensus 1 ~g~~~~~~~~~----------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~ 64 (131)
T cd04026 1 RGRIYLKISVK----------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPV 64 (131)
T ss_pred CcEEEEEEEEC----------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCC
Confidence 48999999876 288999999999999988889999999999953 578999999999999
Q ss_pred eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCCeEE
Q 004872 557 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI 616 (726)
Q Consensus 557 wne~~~f~v~----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i 616 (726)
|||+|.|.+. ...|.|+|||++..+++++||++.+++.++... ..+.||+|.+...|+.
T Consensus 65 wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 65 WNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred ccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 9999999985 357999999999988999999999999999754 6789999998888864
No 80
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.70 E-value=1.7e-16 Score=144.25 Aligned_cols=110 Identities=23% Similarity=0.407 Sum_probs=97.4
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872 381 INVTVVEGKDLMPKD-KSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 456 (726)
Q Consensus 381 L~V~V~~a~~L~~~d-~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG 456 (726)
|.|+|.+|+||+.++ ..|.+||||+++++++ .++|+++ ++.||.|||.|.|.+.+....|.|.|||++.. ++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 789999999998864 4578999999999654 7899999 99999999999999877667999999999988 899999
Q ss_pred EEEEEccccccCCeeeeeeeccccc-----cceeEEEEE
Q 004872 457 SARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIE 490 (726)
Q Consensus 457 ~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~ 490 (726)
.+.++++++..+...+.||+|+... .|+|+++++
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 9999999998777788999998632 699998875
No 81
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.70 E-value=1.4e-16 Score=146.46 Aligned_cols=112 Identities=33% Similarity=0.479 Sum_probs=99.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC----ceeEEEEEEeecCC--CCc
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEIF--GDE 453 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~~--~d~ 453 (726)
|.|+|++|++|...+..|.+||||+++++++.+||+++ ++.||.|||.|.|.+... ...|.|+|||++.. +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 89999999999998888999999999999999999999 999999999999998753 35799999998876 689
Q ss_pred ceEEEEEEccccc-cCCeeeeeeecccc-----ccceeEEEEEEE
Q 004872 454 NMGSARVNLEGLV-EGSVRDIWVPLEKV-----NTGELRLQIEAT 492 (726)
Q Consensus 454 ~iG~~~i~L~~l~-~~~~~~~w~~L~~~-----~~G~I~l~~~~~ 492 (726)
+||++.++++++. .+.....||+|... .+|+|.|++.+.
T Consensus 82 ~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999997 45567899999864 379999988764
No 82
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=1.7e-16 Score=144.93 Aligned_cols=109 Identities=22% Similarity=0.370 Sum_probs=94.6
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEEC-CeEEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC--CCeeE
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYG-DLKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA--SSSIG 587 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~--d~~lG 587 (726)
|+|+|++|++|+..+..+.+||||+++++ .+.++|+++++++||.|||+|.|++. ...|.|+|||++.+++ |++||
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~lG 81 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFLG 81 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceEe
Confidence 78999999999999999999999999996 67889999999999999999999985 6789999999998875 58999
Q ss_pred EEEEEccccCCCC-ceeeEEecCC-------CCCeEEEEEE
Q 004872 588 DCVVEYQRLPPNQ-MADKWIPLQG-------VRKGEIHVLI 620 (726)
Q Consensus 588 ~~~i~l~~l~~~~-~~~~w~~L~~-------~~~G~i~l~l 620 (726)
++.+++.++.... ....|++|.. ...|+|.+++
T Consensus 82 ~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 82 CVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999986443 4478999953 2258888876
No 83
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=1.3e-16 Score=141.68 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=81.3
Q ss_pred eEEEEEEEEeecCccccc----CCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCCCC
Q 004872 510 GWIELVIVEARDLVAADL----RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNALL 581 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~----~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~d~d~~~ 581 (726)
|.|.|+|.+|++|+..+. .+.+||||+++++++++||+++++++||+|||.|.|.+. ...|.|+|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 689999999999998763 245899999999999999999999999999999999973 347999999999999
Q ss_pred CCCeeEEEEEEccccCCCC
Q 004872 582 ASSSIGDCVVEYQRLPPNQ 600 (726)
Q Consensus 582 ~d~~lG~~~i~l~~l~~~~ 600 (726)
+|++||++.++|+++..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 9999999999999986543
No 84
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.69 E-value=2.5e-16 Score=146.14 Aligned_cols=110 Identities=35% Similarity=0.469 Sum_probs=93.8
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 557 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 557 (726)
|+|.+++.|. +..+.|+|+|++|++|++.+..|.+||||++++.. .+++|+++++++||.|
T Consensus 1 g~l~~~~~y~--------------~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w 66 (134)
T cd08403 1 GELMFSLCYL--------------PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY 66 (134)
T ss_pred CeEEEEEEEc--------------CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence 7899999988 66799999999999999999999999999999842 3678999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872 558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608 (726)
Q Consensus 558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 608 (726)
||+|.|.+. ...|.|+|||++.++++++||++.+++... +.....|+++
T Consensus 67 ne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 67 NEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred cceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 999999974 346999999999999999999999998732 3334455554
No 85
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.69 E-value=3.3e-16 Score=143.83 Aligned_cols=108 Identities=35% Similarity=0.570 Sum_probs=94.9
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC--------
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL-------- 580 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~-------- 580 (726)
.|+|+|++|++|+..+..|.+||||++++++...+|+++.+++||.|||+|.|.+. ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 68999999999999999999999999999999999999999999999999999874 56899999999853
Q ss_pred ---CCCCeeEEEEEEccccCCCCceeeEEecCC-----CCCeEEEEEE
Q 004872 581 ---LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLI 620 (726)
Q Consensus 581 ---~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l 620 (726)
+.+++||++.+++..+.. ..+.|++|.. ..+|+|++++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 468999999999998853 4579999974 3469998874
No 86
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.69 E-value=5.3e-16 Score=142.23 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=97.5
Q ss_pred ceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCee
Q 004872 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI 586 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~l 586 (726)
.+.++|+|++|++|+..+..|.+||||++.+++++++|++++++.||+|||.|.|.+. ...|.|+|||++..+ |++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-CCce
Confidence 4789999999999999999999999999999999999999999999999999999863 568999999999875 8999
Q ss_pred EEEEEEccccCCCCceeeEEecC-------CCCCeEEEEEEEE
Q 004872 587 GDCVVEYQRLPPNQMADKWIPLQ-------GVRKGEIHVLITR 622 (726)
Q Consensus 587 G~~~i~l~~l~~~~~~~~w~~L~-------~~~~G~i~l~l~~ 622 (726)
|++.+++..+.. ....|++|. +...|+|.+++.+
T Consensus 81 G~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 81 GQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred EEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 999999987643 445788884 3456999999987
No 87
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.69 E-value=1.1e-16 Score=143.47 Aligned_cols=97 Identities=29% Similarity=0.502 Sum_probs=86.7
Q ss_pred eEEEEEEEEeecCcccccC-CCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCC
Q 004872 510 GWIELVIVEARDLVAADLR-GTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA 579 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~d~ 579 (726)
|.|+|+|++|++|+..+.. |.+||||+|++.+ ..++|+++++++||+|||+|.|.+. ...|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 9999999999843 4679999999999999999999863 3589999999999
Q ss_pred CCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 580 LLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 580 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
+++|++||++.+++.++.. ...|++++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 9999999999999999973 45888875
No 88
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.69 E-value=4.9e-16 Score=145.55 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=96.3
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEE-----CCeEEEeEeeeCCCCCeeeeEEEEecCC-----------CeEEEE
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFPDDG-----------SPLTLH 573 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~wne~~~f~v~~-----------~~l~i~ 573 (726)
+.|.|....+.+|+..+..+.+||||++++ ..++.||+++++|+||+|||+|.|.+.. ..|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 344444444444788888899999999997 2368899999999999999999999853 369999
Q ss_pred EEECCCC-CCCCeeEEEEEEccccCCCCceeeEEecC-C--CCCeEEEEEEEEEecCc
Q 004872 574 VRDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQ-G--VRKGEIHVLITRKVPEL 627 (726)
Q Consensus 574 V~d~d~~-~~d~~lG~~~i~l~~l~~~~~~~~w~~L~-~--~~~G~i~l~l~~~~p~~ 627 (726)
|||++.+ .+|++||++.++|+.+..+.....|++|. | ..+|+|++++..+-|-.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~ 141 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREPLT 141 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCCCc
Confidence 9999986 57999999999999998887778899986 3 34699999999865543
No 89
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=3.7e-16 Score=144.88 Aligned_cols=111 Identities=22% Similarity=0.321 Sum_probs=95.1
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeee
Q 004872 484 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWH 558 (726)
Q Consensus 484 ~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wn 558 (726)
+|.+++.|. +..+.|.|+|++|++|++.+..|.+||||++++.+ .+.+|+++++++||+||
T Consensus 1 ~i~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wn 66 (133)
T cd08384 1 KILVSLMYN--------------TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFN 66 (133)
T ss_pred CEEEEEEEc--------------CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcc
Confidence 367788776 56799999999999999999999999999999953 36799999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872 559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 610 (726)
Q Consensus 559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 610 (726)
|+|.|.+. ...|.|+|||+|..+++++||++.+++.. .++....|+++..
T Consensus 67 e~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 67 EEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred cEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 99999984 35799999999999999999999999985 3344567777643
No 90
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.69 E-value=2.2e-16 Score=146.25 Aligned_cols=103 Identities=28% Similarity=0.413 Sum_probs=92.9
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-------CeEEEeEeeeCCCC
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-------DLKKRTKVIFKTLN 554 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~v~~~t~n 554 (726)
.|+|.++++|. ...+.|+|+|++|++|+..+..|.+||||+|++. ..+++|+++++|+|
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~n 67 (133)
T cd04009 2 YGVLTVKAYYR--------------ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLF 67 (133)
T ss_pred ceEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCC
Confidence 59999999987 4568999999999999999988999999999995 24789999999999
Q ss_pred CeeeeEEEEecC-------CCeEEEEEEECCCCCCCCeeEEEEEEccccCC
Q 004872 555 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP 598 (726)
Q Consensus 555 P~wne~~~f~v~-------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 598 (726)
|+|||+|.|++. ...|.|+|||++.+++|++||++.++|+++..
T Consensus 68 P~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 68 PLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred CccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 999999999973 35799999999999999999999999998864
No 91
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=3.2e-16 Score=140.44 Aligned_cols=99 Identities=27% Similarity=0.371 Sum_probs=88.6
Q ss_pred CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC-------CCeEEEEEEECCCC
Q 004872 508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNAL 580 (726)
Q Consensus 508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-------~~~l~i~V~d~d~~ 580 (726)
....|+|+|++|++|+ .|.+||||++++++++++|+++++++||.|||+|.|.+. ...|.|+|||++.+
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4578999999999998 578999999999999999999999999999999999963 36799999999999
Q ss_pred CCCCeeEEEEEEccccCCC---CceeeEEecCC
Q 004872 581 LASSSIGDCVVEYQRLPPN---QMADKWIPLQG 610 (726)
Q Consensus 581 ~~d~~lG~~~i~l~~l~~~---~~~~~w~~L~~ 610 (726)
++|++||++.++|+.+..+ ....+|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999999999999999554 45689999864
No 92
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=4.6e-16 Score=139.38 Aligned_cols=103 Identities=17% Similarity=0.346 Sum_probs=87.1
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG 587 (726)
+.|.|.|++|++|+..+ ..||||++.+++++.+|++.++ .||.|||.|.|.+. ...|.|+|||+|.+ .|++||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 68999999999997643 4599999999999999999988 49999999999984 45699999999965 899999
Q ss_pred EEEEEccccCCCCce--eeEEecCC---CCCeEEE
Q 004872 588 DCVVEYQRLPPNQMA--DKWIPLQG---VRKGEIH 617 (726)
Q Consensus 588 ~~~i~l~~l~~~~~~--~~w~~L~~---~~~G~i~ 617 (726)
++.++|.++..+... .+||+|+. ...|++.
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~ 111 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIV 111 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeEe
Confidence 999999999755544 89999984 3346554
No 93
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.68 E-value=4.8e-16 Score=147.88 Aligned_cols=114 Identities=25% Similarity=0.444 Sum_probs=99.8
Q ss_pred cEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECC-eEeecccc-CCCCCcee
Q 004872 379 RKINVTVVEGKDLMPKD------------------------------KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWN 426 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d------------------------------~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~wn 426 (726)
|.|.|+|++|++|+.+| ..|.+||||+|.+++ ...||+++ ++.||.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 58999999999999887 346789999999975 45799999 99999999
Q ss_pred eEEEEEeeCCceeEEEEEEeecCCCCcceEEEEEEccccccCCeeeeeeecccc------ccceeEEEEEEE
Q 004872 427 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEAT 492 (726)
Q Consensus 427 e~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~~~~~ 492 (726)
|+|.|.+.+....|.|.|||++..++++||.+.++++++..+...+.||+|.+. ..|+|+++++|.
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 999999877777899999999887788999999999999888788899999753 258999999873
No 94
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.68 E-value=5.2e-16 Score=141.24 Aligned_cols=97 Identities=24% Similarity=0.374 Sum_probs=87.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecC
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEI 449 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~ 449 (726)
.|.|+|++|+||+.++ .+.+||||++++. ..++||+++ ++.||.|||+|.|.+.+ ....|.|+|||++.
T Consensus 14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~ 92 (122)
T cd08381 14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS 92 (122)
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence 7999999999999999 8999999999994 347899999 99999999999998632 36789999999998
Q ss_pred C-CCcceEEEEEEccccccCCeeeeeeec
Q 004872 450 F-GDENMGSARVNLEGLVEGSVRDIWVPL 477 (726)
Q Consensus 450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L 477 (726)
. ++++||++.++|.++..+.....||+|
T Consensus 93 ~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 93 LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 8 799999999999999877777899987
No 95
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.67 E-value=5.9e-16 Score=142.01 Aligned_cols=112 Identities=17% Similarity=0.308 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC--CeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 456 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG 456 (726)
|.|+|++|+||+. ..|.+||||+++++ .+.++|+++ ++.||.|||.|.|.+......|.|+|||++.. ++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999987 67899999999996 467899999 99999999999999866677899999999988 799999
Q ss_pred EEEEEccccccCCeeeeeeecccc------ccceeEEEEEEEEe
Q 004872 457 SARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRV 494 (726)
Q Consensus 457 ~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~~~~~~~ 494 (726)
++.+++.++........||+|.+. ..|+|.+++.|.+.
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999987777899999854 37999999999843
No 96
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=1.2e-15 Score=142.02 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=88.7
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEE--CC---eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEE-eecCC-
Q 004872 380 KINVTVVEGKDLMPKD-KSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF- 450 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d-~~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~-d~~~~- 450 (726)
.|.|+|++|+||..++ ..|.+||||++++ ++ .++||+++ ++.||+|||+|.|.+......|.|+|| |++..
T Consensus 30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~ 109 (146)
T cd04028 30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMD 109 (146)
T ss_pred EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCC
Confidence 7999999999998764 5688999999999 33 37899999 999999999999998866889999999 56666
Q ss_pred CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872 451 GDENMGSARVNLEGLVEGSVRDIWVPLEKV 480 (726)
Q Consensus 451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 480 (726)
++++||++.++|+++..+.....||+|.+.
T Consensus 110 ~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 110 KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 789999999999999767777899999864
No 97
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.67 E-value=5.7e-16 Score=141.74 Aligned_cols=99 Identities=21% Similarity=0.378 Sum_probs=87.6
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecC
Q 004872 380 KINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI 449 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~ 449 (726)
.|.|+|++|+||+.++.. |.+||||++++. ..++||+++ ++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 799999999999999875 899999999992 246899999 99999999999999754 25689999999998
Q ss_pred C-CCcceEEEEEEccccccCCeeeeeeecc
Q 004872 450 F-GDENMGSARVNLEGLVEGSVRDIWVPLE 478 (726)
Q Consensus 450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 478 (726)
. ++++||++.++|.++........||+|.
T Consensus 96 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 96 LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 7 8899999999999997777778999984
No 98
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.67 E-value=3.1e-16 Score=145.55 Aligned_cols=115 Identities=29% Similarity=0.438 Sum_probs=101.3
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 557 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 557 (726)
|+|.++++|. +..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|+++.++.||.|
T Consensus 1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w 66 (134)
T cd00276 1 GELLLSLSYL--------------PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF 66 (134)
T ss_pred CeEEEEEEee--------------CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence 7899999987 55689999999999999998889999999999954 2569999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCC
Q 004872 558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK 613 (726)
Q Consensus 558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~ 613 (726)
||+|.|.+. ...|.|+|||++.++++++||++.++++. .+...+.|++|...++
T Consensus 67 ne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~ 125 (134)
T cd00276 67 NEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPR 125 (134)
T ss_pred eeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCC
Confidence 999999984 46899999999998899999999999998 5566788988876543
No 99
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.66 E-value=6.7e-16 Score=140.29 Aligned_cols=107 Identities=25% Similarity=0.418 Sum_probs=94.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCCCCcceEEE
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSA 458 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~~d~~iG~~ 458 (726)
|.|+|++|+||+.+ .+||||++.+++...||+++ ++.||.|||+|.|.+.. ....|.|+|||++..++++||++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeE
Confidence 88999999999876 78999999999899999999 99999999999999776 47789999999987788999999
Q ss_pred EEEccccccCC-----eeeeeeeccccc----cceeEEEEEE
Q 004872 459 RVNLEGLVEGS-----VRDIWVPLEKVN----TGELRLQIEA 491 (726)
Q Consensus 459 ~i~L~~l~~~~-----~~~~w~~L~~~~----~G~I~l~~~~ 491 (726)
.++++++..+. ....||+|.+.. +|+|.+++.|
T Consensus 78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 78 CFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 99999987532 356999998754 5999999876
No 100
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=9.6e-16 Score=140.26 Aligned_cols=93 Identities=18% Similarity=0.347 Sum_probs=80.8
Q ss_pred ccEEEEEEEeecCCCCCCCC-CCCcccccccCCCCccccccCCCCcCcEEEEEEcc---EEeeeecCCCCCCcccceeEE
Q 004872 185 GGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDARPGSDPRWDSMFNM 260 (726)
Q Consensus 185 ~GvL~V~v~~A~~L~~~~~~-g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~---~~rTt~i~~t~nP~WnEtf~~ 260 (726)
+|+|.|+|++|++|+..+.. |.+ ||||+++++. ..+|++++++.||.|||+|.|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~----------------------dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~ 58 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTV----------------------DPYVTFSISNRRELARTKVKKDTSNPVWNETKYI 58 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCC----------------------CCeEEEEECCCCcceEeeeecCCCCCcceEEEEE
Confidence 49999999999999965533 323 9999999964 678899999999999999999
Q ss_pred EEecCCceEEEEEEEeCCCCCCcceeEEEEEeceeccCCC
Q 004872 261 VLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300 (726)
Q Consensus 261 ~v~~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~ 300 (726)
.+.+..+.|.|+|||.+.. .++++||.+.++|+++....
T Consensus 59 ~v~~~~~~l~~~v~d~~~~-~~d~~iG~~~~~l~~l~~~~ 97 (124)
T cd04044 59 LVNSLTEPLNLTVYDFNDK-RKDKLIGTAEFDLSSLLQNP 97 (124)
T ss_pred EeCCCCCEEEEEEEecCCC-CCCceeEEEEEEHHHhccCc
Confidence 9986688999999999986 78999999999999998643
No 101
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.66 E-value=7.3e-16 Score=136.58 Aligned_cols=98 Identities=22% Similarity=0.376 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCCcceEEE
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSA 458 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~iG~~ 458 (726)
|.|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||.|.|.+.++ ...|.|+|||++. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 88999999999998888999999999999999999999 999999999999998874 6789999999886 8899999
Q ss_pred EEEccccccCC--eeeeeeecccc
Q 004872 459 RVNLEGLVEGS--VRDIWVPLEKV 480 (726)
Q Consensus 459 ~i~L~~l~~~~--~~~~w~~L~~~ 480 (726)
.++|.++.... ..+.||+|.+.
T Consensus 80 ~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccccceeeeeEecCCC
Confidence 99999998654 57899999864
No 102
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=4.3e-16 Score=139.52 Aligned_cols=92 Identities=18% Similarity=0.360 Sum_probs=80.1
Q ss_pred cEEEEEEEeecCCCCCCCC-CCCcccccccCCCCccccccCCCCcCcEEEEEEc----cEEeeeecCCCCCCcccceeEE
Q 004872 186 GIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDARPGSDPRWDSMFNM 260 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~-g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g----~~~rTt~i~~t~nP~WnEtf~~ 260 (726)
|+|+|+|++|++|+..+.. |.+ ||||+|++. ...+|+++++++||+|||+|.|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~----------------------Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f 58 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSS----------------------DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFV 58 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC----------------------CccEEEEEccCCCccEeeeeECCCCCCccceeEEE
Confidence 8999999999999998866 554 999999983 3578899999999999999999
Q ss_pred EEecC----CceEEEEEEEeCCCCCCcceeEEEEEeceeccCCC
Q 004872 261 VLHEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300 (726)
Q Consensus 261 ~v~~~----~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~ 300 (726)
.+... .+.|.|+|||+|.. .++|+||.+.+++.+|..++
T Consensus 59 ~~~~~~~~~~~~l~~~V~d~d~~-~~dd~lG~~~i~l~~l~~~~ 101 (111)
T cd04041 59 LVTPDEVKAGERLSCRLWDSDRF-TADDRLGRVEIDLKELIEDR 101 (111)
T ss_pred EeCchhccCCCEEEEEEEeCCCC-CCCCcceEEEEEHHHHhcCC
Confidence 87543 46899999999986 78999999999999998643
No 103
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.66 E-value=1.5e-15 Score=139.17 Aligned_cols=111 Identities=25% Similarity=0.464 Sum_probs=95.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeccccCCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcceE
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 456 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~iG 456 (726)
.|.|+|++|+||+.+ +.+||||++.+++ +..||++.++.||.|||.|.|.+..+ ...+.|.|||++.. ++++||
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEE
Confidence 699999999999874 4789999999976 45788866778999999999986554 35789999999888 899999
Q ss_pred EEEEEccccccCCeeeeeeeccccc------cceeEEEEEEEE
Q 004872 457 SARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATR 493 (726)
Q Consensus 457 ~~~i~L~~l~~~~~~~~w~~L~~~~------~G~I~l~~~~~~ 493 (726)
.+.++|.++..+.....||+|.+.. .|+|+++++|.+
T Consensus 82 ~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 82 EVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999998887888999997642 499999999974
No 104
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.66 E-value=1.2e-15 Score=139.63 Aligned_cols=100 Identities=23% Similarity=0.444 Sum_probs=90.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C-CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF- 450 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g-~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~- 450 (726)
+.|.|+|++|+||+.++..|.+||||++++ + ...+||+++ ++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 95 (124)
T cd08387 16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS 95 (124)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC
Confidence 389999999999999998999999999999 3 557999999 999999999999997653 56899999999887
Q ss_pred CCcceEEEEEEccccccCCeeeeeeecc
Q 004872 451 GDENMGSARVNLEGLVEGSVRDIWVPLE 478 (726)
Q Consensus 451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 478 (726)
++++||++.++++++..+.....||+|.
T Consensus 96 ~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 96 RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCceeEEEEEecccccCCCCcceEEECc
Confidence 7999999999999998777889999986
No 105
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.66 E-value=5.9e-16 Score=141.66 Aligned_cols=102 Identities=24% Similarity=0.446 Sum_probs=93.5
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeC-CCCCeeeeEEEEecC------CCeEEEEEEECCCCCC
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD------GSPLTLHVRDHNALLA 582 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~------~~~l~i~V~d~d~~~~ 582 (726)
|.|+|+|++|++|+..+..+.+||||++++++..++|+++.+ +.||.|||+|.|.+. ...|.|+|||++.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 689999999999999988899999999999999999999885 999999999999984 2579999999999999
Q ss_pred CCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872 583 SSSIGDCVVEYQRLPPNQMADKWIPLQGV 611 (726)
Q Consensus 583 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 611 (726)
|++||++.+++.++..+...+.|+.|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999887788999999863
No 106
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.66 E-value=1.3e-15 Score=139.31 Aligned_cols=100 Identities=21% Similarity=0.337 Sum_probs=87.8
Q ss_pred cEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeec
Q 004872 379 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE 448 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~-~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~ 448 (726)
+.|.|+|++|+||...+. .|.+||||++++. ...+||+++ ++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~ 94 (125)
T cd04029 15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYD 94 (125)
T ss_pred CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 379999999999988765 4889999999992 236899999 99999999999999755 2568999999999
Q ss_pred CC-CCcceEEEEEEccccccCCeeeeeeecc
Q 004872 449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 478 (726)
Q Consensus 449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 478 (726)
.. ++++||++.+++.++........||+|.
T Consensus 95 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 95 RFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 87 8899999999999998888889999984
No 107
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.66 E-value=2.1e-15 Score=137.83 Aligned_cols=111 Identities=32% Similarity=0.461 Sum_probs=97.0
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCee
Q 004872 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQW 557 (726)
Q Consensus 483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~w 557 (726)
|+|.+++.|. +..+.|+|+|++|++|++.+..+.+||||++.+. ....+|+++++++||.|
T Consensus 2 G~~~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~W 67 (123)
T cd04035 2 GTLEFTLLYD--------------PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEF 67 (123)
T ss_pred cEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCc
Confidence 8999999988 5568999999999999999888999999999983 24689999999999999
Q ss_pred eeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872 558 HQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608 (726)
Q Consensus 558 ne~~~f~-v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 608 (726)
||+|.|. +. ...|.|+|||++.+ ++++||++.++++++..++....|+.|
T Consensus 68 ne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 68 NETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred cceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 9999996 32 46899999999988 899999999999999887766666543
No 108
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=1.5e-15 Score=141.81 Aligned_cols=89 Identities=31% Similarity=0.587 Sum_probs=83.2
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG 587 (726)
|.|+|+|++|++|+..+. +.+||||++.+++++.+|+++++++||+|||+|.|.+. ...|.|+|||++.+++|++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999998887 89999999999999999999999999999999999985 567999999999999999999
Q ss_pred EEEEEccccCCC
Q 004872 588 DCVVEYQRLPPN 599 (726)
Q Consensus 588 ~~~i~l~~l~~~ 599 (726)
++.+++..+...
T Consensus 81 ~a~i~l~~l~~~ 92 (145)
T cd04038 81 EAEIDLEPLVEA 92 (145)
T ss_pred EEEEEHHHhhhh
Confidence 999999988654
No 109
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.65 E-value=7.1e-16 Score=141.38 Aligned_cols=108 Identities=29% Similarity=0.353 Sum_probs=94.5
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeee-CCCCCeeeeEEEEecC-------CCeEEEEEEECCCCC
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIF-KTLNPQWHQTLEFPDD-------GSPLTLHVRDHNALL 581 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~-~t~nP~wne~~~f~v~-------~~~l~i~V~d~d~~~ 581 (726)
.|+|+|++|++|+..+..+.+||||+|++++ ++++|+++. ++.||.|||.|.|.+. ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4799999999999998889999999999988 889999985 5899999999999984 368999999999988
Q ss_pred CCCeeEEEEEEccccCCCCc-----eeeEEecC---CCCCeEEEE
Q 004872 582 ASSSIGDCVVEYQRLPPNQM-----ADKWIPLQ---GVRKGEIHV 618 (726)
Q Consensus 582 ~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~---~~~~G~i~l 618 (726)
+|++||++.+++.++..+.. ...||+|. |..+|+|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 99999999999999975543 47899996 456798874
No 110
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.65 E-value=1.3e-15 Score=138.70 Aligned_cols=110 Identities=25% Similarity=0.480 Sum_probs=96.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceEE
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGS 457 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG~ 457 (726)
|.|+|++|++|..++..|.+||||++++++. .+||+++ ++.||.|||.|.|.+......|.|.|||++.. +|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 8899999999999999999999999999654 5799999 99999999999999876668899999999988 8999999
Q ss_pred EEEEccccccCC-eeeeeeeccccc-----cceeEEEEE
Q 004872 458 ARVNLEGLVEGS-VRDIWVPLEKVN-----TGELRLQIE 490 (726)
Q Consensus 458 ~~i~L~~l~~~~-~~~~w~~L~~~~-----~G~I~l~~~ 490 (726)
+.+++.++.... ..+.|++|.+.. .|+|++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999887543 367999998643 689988764
No 111
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1.2e-15 Score=137.37 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=86.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE-C----C--eEeecccc-CCCCCceeeEEEEEeeCC----ceeEEEEEEeec
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQY-G----K--IVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEE 448 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~l-g----~--~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~ 448 (726)
|+|+|++|++|+.++ .|.+||||+|++ | . ++++|+++ ++.||+|||+|.|.+... ...|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999887 599999999998 4 2 35789999 999999999999998742 457999999998
Q ss_pred CC-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872 449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 480 (726)
Q Consensus 449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 480 (726)
.. ++++||++.+++.++..++....|++|...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 76 789999999999999988888899999763
No 112
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.65 E-value=1.4e-15 Score=134.99 Aligned_cols=96 Identities=15% Similarity=0.246 Sum_probs=82.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF 450 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~ 450 (726)
+.|.|+|++|+||+ . .|.+||||++++. ..+++|+++ +|.||+|||+|.|.+.. ....|.|.|||.|++
T Consensus 14 ~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drf 90 (118)
T cd08677 14 AELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRF 90 (118)
T ss_pred CEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCC
Confidence 48999999999998 2 4679999999993 257899999 99999999999999765 367899999999999
Q ss_pred -CCcceEEEEEEccccccCCeeeeeeec
Q 004872 451 -GDENMGSARVNLEGLVEGSVRDIWVPL 477 (726)
Q Consensus 451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L 477 (726)
++++||++.++++++........|..|
T Consensus 91 s~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 91 SRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCceEEEEEEccccccCCccccchhcC
Confidence 899999999999998666666678654
No 113
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=2.3e-15 Score=136.57 Aligned_cols=107 Identities=29% Similarity=0.370 Sum_probs=94.4
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCee
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI 586 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~l 586 (726)
|.|+|+|++|++|+..+..|.+||||++.+++ ...+|+++.++.||.|||+|.|++. ...|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 67999999999999999899999999999977 5789999999999999999999874 47899999999999999999
Q ss_pred EEEEEEccccCCCCceeeEEecCCCCCeEEE
Q 004872 587 GDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 617 (726)
Q Consensus 587 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~ 617 (726)
|++.+++.++..+ ..+.||.|.+...+.+.
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 9999999999776 55788888765555443
No 114
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.64 E-value=9.4e-17 Score=164.99 Aligned_cols=117 Identities=31% Similarity=0.492 Sum_probs=103.5
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~ 556 (726)
+|+|++.+... ...|.|+|.+|+||.++|.+|.+||||++.+- ..+++|++++.++||+
T Consensus 168 RGrl~l~~~~~----------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~ 231 (683)
T KOG0696|consen 168 RGRLYLEAHIK----------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPV 231 (683)
T ss_pred cceEEEEEEec----------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcc
Confidence 69999988754 47899999999999999999999999999993 2578999999999999
Q ss_pred eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCCeE
Q 004872 557 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 615 (726)
Q Consensus 557 wne~~~f~v~----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~ 615 (726)
|||+|.|... ...|.|+|||+|+.++++|+|...+.+++|... +.+.||.|-....||
T Consensus 232 wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 232 WNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGE 293 (683)
T ss_pred ccceeEEecccccccceeEEEEecccccccccccceecccHHHHhhc-chhhHHHHhhhhcCc
Confidence 9999999973 578999999999999999999999999999754 578999997655564
No 115
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.64 E-value=2.4e-15 Score=137.72 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=86.3
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872 380 KINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 449 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~ 449 (726)
.|.|+|++|+||+.++.. |.+||||++++. ..++||+++ ++.||+|||+|.|.+... ...|.+.|||.+.
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 899999999999998875 999999999992 347799999 999999999999997553 5789999999998
Q ss_pred C-CCcceEEEEEEccccccC---Ceeeeeeecc
Q 004872 450 F-GDENMGSARVNLEGLVEG---SVRDIWVPLE 478 (726)
Q Consensus 450 ~-~d~~iG~~~i~L~~l~~~---~~~~~w~~L~ 478 (726)
. ++++||++.|+|.++... .....||+|.
T Consensus 96 ~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 7 889999999999998543 3678999984
No 116
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.64 E-value=3.3e-15 Score=135.70 Aligned_cols=111 Identities=24% Similarity=0.404 Sum_probs=98.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 456 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG 456 (726)
|.|.|+|++|++|+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+.+....+.|+|||++.. ++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 4799999999999999988999999999998888999999 99999999999999766578899999999886 889999
Q ss_pred EEEEEccccccCCeeeeeeecccc-----ccceeEEEEEE
Q 004872 457 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA 491 (726)
Q Consensus 457 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~~~~ 491 (726)
++.+++.++..+. ..||+|... ..|+|.+++++
T Consensus 81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999986543 579999753 36999988865
No 117
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.64 E-value=1.3e-15 Score=143.01 Aligned_cols=100 Identities=30% Similarity=0.488 Sum_probs=88.9
Q ss_pred CCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----------------------------eEEEeEeeeCCCC
Q 004872 504 NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----------------------------LKKRTKVIFKTLN 554 (726)
Q Consensus 504 ~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----------------------------~~~kT~v~~~t~n 554 (726)
...++.+.|+|+|++|++|++.|..|.+||||++.+.. ..++|+++.+++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 35688999999999999999999999999999999853 1368999999999
Q ss_pred CeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872 555 PQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608 (726)
Q Consensus 555 P~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 608 (726)
|.|||+|.|.+. ...|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999984 468999999998 8899999999999984 457999987
No 118
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.64 E-value=3.3e-15 Score=139.44 Aligned_cols=93 Identities=14% Similarity=0.329 Sum_probs=82.9
Q ss_pred ccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-cEEeeeecCCCCCCcccceeEEEEe
Q 004872 185 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVLH 263 (726)
Q Consensus 185 ~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~~~rTt~i~~t~nP~WnEtf~~~v~ 263 (726)
.|.|+|+|++|++|+..+. +++ ||||+++++ ...+|++++++.||+|||+|.|.+.
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~s----------------------DPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~ 57 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSS----------------------DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVP 57 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCc----------------------CcEEEEEECCEEEEeeeEcCCCCCeecccEEEEec
Confidence 4899999999999998876 544 999999997 4577888999999999999999998
Q ss_pred cCCceEEEEEEEeCCCCCCcceeEEEEEeceeccCCCc
Q 004872 264 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDST 301 (726)
Q Consensus 264 ~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~~ 301 (726)
+..+.|.|+|||+|.+ .+|++||.+.++++++.....
T Consensus 58 ~~~~~l~~~V~D~d~~-~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 58 NPMAPLKLEVFDKDTF-SKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred CCCCEEEEEEEECCCC-CCCCEEEEEEEEHHHhhhhhh
Confidence 8888999999999987 789999999999999886543
No 119
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.6e-15 Score=140.67 Aligned_cols=111 Identities=28% Similarity=0.374 Sum_probs=97.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-C
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G 451 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-------~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~ 451 (726)
|.|+|++|++|+.++..|.+||||++++++. .++|+++ ++.||.|||+|.|.+......|.|+|||++.. +
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~ 81 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTR 81 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCC
Confidence 8999999999999998899999999999543 5799999 99999999999999876677899999999988 7
Q ss_pred CcceEEEEEEccccccCC------eeeeeeecccc-----ccceeEEEEEE
Q 004872 452 DENMGSARVNLEGLVEGS------VRDIWVPLEKV-----NTGELRLQIEA 491 (726)
Q Consensus 452 d~~iG~~~i~L~~l~~~~------~~~~w~~L~~~-----~~G~I~l~~~~ 491 (726)
+++||++.+++.++.... ....||+|++. ..|+|++++.|
T Consensus 82 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 82 DDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 899999999999988643 34699999853 36999999987
No 120
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.64 E-value=2.4e-15 Score=137.38 Aligned_cols=99 Identities=25% Similarity=0.514 Sum_probs=90.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcceEE
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMGS 457 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~iG~ 457 (726)
|+|+|++|++|..++..+.+||||++++++..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. ++++||.
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 89999999999999888899999999999899999999 999999999999998765 57899999999887 7899999
Q ss_pred EEEEccccccCCeeeeeeeccc
Q 004872 458 ARVNLEGLVEGSVRDIWVPLEK 479 (726)
Q Consensus 458 ~~i~L~~l~~~~~~~~w~~L~~ 479 (726)
+.+++.++..+.....||.|.+
T Consensus 82 ~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 82 VVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEHHHcccCCCCCCEEECCC
Confidence 9999999987666789999975
No 121
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.63 E-value=2.1e-15 Score=137.20 Aligned_cols=93 Identities=29% Similarity=0.483 Sum_probs=83.7
Q ss_pred CCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEec----CCCeEEEEEEECCCC
Q 004872 505 IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----DGSPLTLHVRDHNAL 580 (726)
Q Consensus 505 ~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v----~~~~l~i~V~d~d~~ 580 (726)
.....+.|+|+|++|++|+. +..+.+||||+|++++++++|+++++++||+|||+|.|.. ....|.|+|||+|.+
T Consensus 23 ~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 23 TRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG 101 (127)
T ss_pred CcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence 45667999999999999984 6778899999999999999999999999999999999973 267899999999999
Q ss_pred CCCCeeEEEEEEccccCC
Q 004872 581 LASSSIGDCVVEYQRLPP 598 (726)
Q Consensus 581 ~~d~~lG~~~i~l~~l~~ 598 (726)
++|++||++.++|.....
T Consensus 102 s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCeeEEEEEEecCCce
Confidence 999999999999986653
No 122
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.63 E-value=2.6e-15 Score=135.90 Aligned_cols=98 Identities=27% Similarity=0.461 Sum_probs=85.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCC
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF 450 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~ 450 (726)
+.|.|+|++|+||+.++ .|.+||||++++. ...+||+++ ++.||.|||+|.|.+... ...+.|.|||++..
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 48999999999999988 8899999999993 247799999 999999999999997653 45789999999876
Q ss_pred --CCcceEEEEEEccccccCCeeeeeeec
Q 004872 451 --GDENMGSARVNLEGLVEGSVRDIWVPL 477 (726)
Q Consensus 451 --~d~~iG~~~i~L~~l~~~~~~~~w~~L 477 (726)
++++||.+.+++.++..+.....||.|
T Consensus 91 ~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 478999999999999877778899976
No 123
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.63 E-value=5.1e-15 Score=135.47 Aligned_cols=99 Identities=28% Similarity=0.445 Sum_probs=89.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-C
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-G 451 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~ 451 (726)
.|.|+|++|+||+.++..+.+||||++++. ...++|+++ ++.||.|||.|.|.+... ...|.|+|||++.. +
T Consensus 17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~ 96 (124)
T cd08385 17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSK 96 (124)
T ss_pred EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCC
Confidence 799999999999999888999999999983 357899999 999999999999997652 56899999999988 8
Q ss_pred CcceEEEEEEccccccCCeeeeeeecc
Q 004872 452 DENMGSARVNLEGLVEGSVRDIWVPLE 478 (726)
Q Consensus 452 d~~iG~~~i~L~~l~~~~~~~~w~~L~ 478 (726)
+++||++.+++.++..+.....|++|+
T Consensus 97 ~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 97 HDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CceeEEEEEecCcccCCCCcceEEEcc
Confidence 899999999999998777888999986
No 124
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=2.2e-15 Score=134.93 Aligned_cols=98 Identities=26% Similarity=0.440 Sum_probs=86.1
Q ss_pred ccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEccccCC-CC
Q 004872 526 DLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP-NQ 600 (726)
Q Consensus 526 d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~-~~ 600 (726)
..+|.+||||+|.++++ ..+|++++++.||+|||.|.|.+. ...|.|+|+|++.+ +|++||++.++|+++.. ..
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh
Confidence 35789999999999875 679999999999999999999985 36699999999998 89999999999998843 44
Q ss_pred ceeeEEecCCCCCeEEEEEEEEEec
Q 004872 601 MADKWIPLQGVRKGEIHVLITRKVP 625 (726)
Q Consensus 601 ~~~~w~~L~~~~~G~i~l~l~~~~p 625 (726)
....|++|.+...|+|++++.| .|
T Consensus 87 ~~~~w~~L~~~~~G~i~~~~~~-~p 110 (111)
T cd04052 87 VGQQWFPLSGNGQGRIRISALW-KP 110 (111)
T ss_pred ccceeEECCCCCCCEEEEEEEE-ec
Confidence 5689999998889999999998 44
No 125
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.63 E-value=4.2e-15 Score=137.59 Aligned_cols=111 Identities=27% Similarity=0.552 Sum_probs=97.4
Q ss_pred cEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEe
Q 004872 379 RKINVTVVEGKDLMPKDKS----------GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN 446 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~----------g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d 446 (726)
|.|+|+|++|++|...+.. +.+||||++.++++ ..+|+++ ++.||.|||+|.|.+. ....+.|.|||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d 82 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH 82 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence 4899999999999887752 67999999999765 5799999 9999999999999975 55789999999
Q ss_pred ecCC-CCcceEEEEEEcccccc--CCeeeeeeeccccccceeEEEEEEE
Q 004872 447 EEIF-GDENMGSARVNLEGLVE--GSVRDIWVPLEKVNTGELRLQIEAT 492 (726)
Q Consensus 447 ~~~~-~d~~iG~~~i~L~~l~~--~~~~~~w~~L~~~~~G~I~l~~~~~ 492 (726)
++.. .+++||++.++|.++.. +.....|++|.+ .|+|+++++|.
T Consensus 83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~l~l~~~~~ 129 (132)
T cd04014 83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP--QGKLHVKIELK 129 (132)
T ss_pred CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC--CcEEEEEEEEe
Confidence 8877 78999999999999987 456789999984 69999999987
No 126
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.63 E-value=2.1e-15 Score=140.11 Aligned_cols=99 Identities=27% Similarity=0.391 Sum_probs=89.9
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEEC----CeEEEeEeeeCCCCCeeeeEEEEecCC------------------Ce
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYG----DLKKRTKVIFKTLNPQWHQTLEFPDDG------------------SP 569 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~v~~~t~nP~wne~~~f~v~~------------------~~ 569 (726)
|+|.|++|++|+.. ..|.+||||+++++ ..+++|+++.++.||.|||+|.|++.. ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 678999999999999999999999742 47
Q ss_pred EEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872 570 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 611 (726)
Q Consensus 570 l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 611 (726)
|.|+|||++.++++++||++.+++.++........|++|+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999988999999999999999877778999999853
No 127
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=5e-15 Score=135.73 Aligned_cols=99 Identities=28% Similarity=0.484 Sum_probs=85.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeec
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 448 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~ 448 (726)
+.|.|+|++|++|...+..+.+||||++++. ..++||+++ ++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~ 95 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD 95 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence 3899999999999998888999999999994 258899999 99999999999998644 3568999999999
Q ss_pred CC-CCcceEEEEEEccccccCCeeeeeeecc
Q 004872 449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 478 (726)
Q Consensus 449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 478 (726)
.. ++++||++.++|.+.. ......||+|+
T Consensus 96 ~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 96 RDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 87 7899999999999943 33346899985
No 128
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=6.6e-15 Score=136.71 Aligned_cols=115 Identities=24% Similarity=0.428 Sum_probs=96.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC----------CceeEEEEEEeec
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----------GGECLMVKCYNEE 448 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~----------~~~~l~i~V~d~~ 448 (726)
.|+|+|++|++|+.++..|.+||||++++++..++|+++ ++.||.|||.|.|.+.. ....+.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 699999999999999999999999999999999999999 99999999999997432 1246999999999
Q ss_pred CC-CCcceEEEEE-Ecccccc---CCeeeeeeecccc--ccceeEEEEEEEEe
Q 004872 449 IF-GDENMGSARV-NLEGLVE---GSVRDIWVPLEKV--NTGELRLQIEATRV 494 (726)
Q Consensus 449 ~~-~d~~iG~~~i-~L~~l~~---~~~~~~w~~L~~~--~~G~I~l~~~~~~~ 494 (726)
.. +|++||++.+ ++..+.. .....+|++|... ..|+|.+++++.++
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 87 7899999987 4433332 3467799999853 46999999998864
No 129
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.62 E-value=7.9e-15 Score=135.40 Aligned_cols=109 Identities=24% Similarity=0.317 Sum_probs=91.4
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECC-------------eEEEeEeeeCCCCCee-eeEEEEec-CCCeEEEEEE
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-------------LKKRTKVIFKTLNPQW-HQTLEFPD-DGSPLTLHVR 575 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------------~~~kT~v~~~t~nP~w-ne~~~f~v-~~~~l~i~V~ 575 (726)
.+.|++++|+||+ .+..|.+||||++++.. ++++|+++++++||+| ||+|.|.+ .+..|.++||
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~ 80 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVK 80 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEE
Confidence 3678999999998 67789999999999942 3689999999999999 99999998 4678999999
Q ss_pred ECCCCCC---CCeeEEEEEEccccCCC---CceeeEEecCC-----CCCeEEEEEE
Q 004872 576 DHNALLA---SSSIGDCVVEYQRLPPN---QMADKWIPLQG-----VRKGEIHVLI 620 (726)
Q Consensus 576 d~d~~~~---d~~lG~~~i~l~~l~~~---~~~~~w~~L~~-----~~~G~i~l~l 620 (726)
|++..++ +++||++.+++.++..+ .....|++|+. ..+|+|.+.+
T Consensus 81 D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 81 DKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred ecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9876443 79999999999999644 34778999973 3459888875
No 130
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=4.8e-15 Score=133.75 Aligned_cols=106 Identities=29% Similarity=0.507 Sum_probs=93.7
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG 587 (726)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+. ...+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999998889999999999976 4579999999999999999999984 467999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCCC---CCeEEE
Q 004872 588 DCVVEYQRLPPNQMADKWIPLQGV---RKGEIH 617 (726)
Q Consensus 588 ~~~i~l~~l~~~~~~~~w~~L~~~---~~G~i~ 617 (726)
++.+++.++..+.....|++|.+. ..|.+.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF 113 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence 999999999888889999999753 335543
No 131
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.61 E-value=3.7e-15 Score=139.54 Aligned_cols=98 Identities=28% Similarity=0.434 Sum_probs=85.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCceeeEEEEEee---------------C-Cce
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEI---------------G-GGE 438 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~wne~f~f~v~---------------~-~~~ 438 (726)
|.|+|++|+||.. .+|.+||||+|++.. ..++|+++ ++.||+|||+|.|.+. + ...
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999987 468999999999943 57899999 9999999999999984 1 135
Q ss_pred eEEEEEEeecCC-CCcceEEEEEEccccccC-Ceeeeeeecccc
Q 004872 439 CLMVKCYNEEIF-GDENMGSARVNLEGLVEG-SVRDIWVPLEKV 480 (726)
Q Consensus 439 ~l~i~V~d~~~~-~d~~iG~~~i~L~~l~~~-~~~~~w~~L~~~ 480 (726)
.|.|.|||++.. ++++||++.|++.++..+ .....||+|.+.
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 799999999987 899999999999999876 567899999864
No 132
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.61 E-value=1.3e-14 Score=133.11 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=95.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEEE
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSA 458 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~ 458 (726)
+|+|+|++|++|...+..|.+||||++.++++.++|+++ ++.||.|||.|.|...+....|.|+|||++..+|++||.+
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~ 83 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQA 83 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEE
Confidence 799999999999998888999999999999999999999 9999999999999877778899999999987788999999
Q ss_pred EEEccccccCCeeeeeeeccc-------cccceeEEEEEEE
Q 004872 459 RVNLEGLVEGSVRDIWVPLEK-------VNTGELRLQIEAT 492 (726)
Q Consensus 459 ~i~L~~l~~~~~~~~w~~L~~-------~~~G~I~l~~~~~ 492 (726)
.+++.++. .....|++|.. ...|+|.+++...
T Consensus 84 ~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 84 TLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 99998864 33457788842 2357777777654
No 133
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.61 E-value=1.4e-14 Score=132.95 Aligned_cols=99 Identities=24% Similarity=0.317 Sum_probs=85.1
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecCC
Q 004872 380 KINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF 450 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~ 450 (726)
.|.|+|++|+||+..+.. +.+||||++++. ++++||+++ ++.||.|||+|.|...+ ....|.|+|||++..
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence 899999999999988876 899999999983 457899999 99999999999995333 245799999999888
Q ss_pred -CCcceEEEEEEccccccC--Ceeeeeeecc
Q 004872 451 -GDENMGSARVNLEGLVEG--SVRDIWVPLE 478 (726)
Q Consensus 451 -~d~~iG~~~i~L~~l~~~--~~~~~w~~L~ 478 (726)
++++||++.++|.++... .....|.+|+
T Consensus 97 ~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 97 SRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 899999999999998654 4677898876
No 134
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.60 E-value=1e-14 Score=133.39 Aligned_cols=110 Identities=25% Similarity=0.416 Sum_probs=92.7
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCeeE
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~d~~lG 587 (726)
.+|+|+|.+|+ |...+..+.+||||+++++++ ..+|+++++++||+|||+|.|.+. ...|.|+|||++..+.|++||
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEE
Confidence 46899999998 655555889999999999887 899999999999999999999984 678999999999999999999
Q ss_pred EEEEEccccCCCCc-----eeeEEecCC------CCCeEEEEEE
Q 004872 588 DCVVEYQRLPPNQM-----ADKWIPLQG------VRKGEIHVLI 620 (726)
Q Consensus 588 ~~~i~l~~l~~~~~-----~~~w~~L~~------~~~G~i~l~l 620 (726)
++.++|.++..... ...|++|.. ...|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999998864321 345899852 3469888775
No 135
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.60 E-value=4.2e-15 Score=135.23 Aligned_cols=91 Identities=22% Similarity=0.318 Sum_probs=77.9
Q ss_pred ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-cEEeeeecCCCCCCcccceeEEE
Q 004872 183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMV 261 (726)
Q Consensus 183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~~~rTt~i~~t~nP~WnEtf~~~ 261 (726)
...|.|+|+|++|++|+. +..|.+ ||||+|+++ ...||++++++.||+|||+|.|.
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~----------------------DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~ 81 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTST----------------------DGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFG 81 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCC----------------------CeEEEEEECCccccCceecCCCCCcCCCEEEEe
Confidence 466999999999999984 544543 999999996 56788899999999999999997
Q ss_pred Eec--CCceEEEEEEEeCCCCCCcceeEEEEEeceecc
Q 004872 262 LHE--ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 297 (726)
Q Consensus 262 v~~--~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~ 297 (726)
... ..+.|.|+|||+|.. +++++||++.++|....
T Consensus 82 ~~~~~~~~~L~v~V~D~d~~-s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 82 SVELSPGGKLRFEVWDRDNG-WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred cccCCCCCEEEEEEEeCCCC-CCCCeeEEEEEEecCCc
Confidence 433 378999999999986 79999999999998655
No 136
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.60 E-value=1.1e-14 Score=138.99 Aligned_cols=104 Identities=24% Similarity=0.374 Sum_probs=90.7
Q ss_pred CccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeCC----ceeEEEEEEe
Q 004872 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYN 446 (726)
Q Consensus 377 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d 446 (726)
+.+.|.|+|++|+||+..+..+.+||||++++ +...+||+++ ++.||.|||.|.|.+... ...|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 44589999999999999998899999999988 2468999999 999999999999985432 4579999999
Q ss_pred ecCC-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872 447 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 480 (726)
Q Consensus 447 ~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 480 (726)
++.. ++++||++.+++.++........|+.+.+.
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 9988 799999999999999877777899988763
No 137
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=9.9e-15 Score=133.29 Aligned_cols=99 Identities=27% Similarity=0.408 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEE-eeC---CceeEEEEEEeecCC-
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEIF- 450 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l~i~V~d~~~~- 450 (726)
.|.|+|++|+||+..+..|.+||||++.+ .+..+||++. + .||+|||+|.|. +.. ....|.|+|||++..
T Consensus 17 ~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~ 95 (124)
T cd08389 17 KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMR 95 (124)
T ss_pred EEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcc
Confidence 79999999999999998899999999887 3568899988 7 999999999998 443 367899999999988
Q ss_pred CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872 451 GDENMGSARVNLEGLVEGSVRDIWVPLEK 479 (726)
Q Consensus 451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 479 (726)
++++||++.++|+++..+.....||+|++
T Consensus 96 ~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 96 KERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred cCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 79999999999999988778899999873
No 138
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=5.9e-15 Score=133.86 Aligned_cols=91 Identities=14% Similarity=0.241 Sum_probs=81.4
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc--EEeeeecCCCCCCcccceeEEEEe
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE--LTRRTDARPGSDPRWDSMFNMVLH 263 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~--~~rTt~i~~t~nP~WnEtf~~~v~ 263 (726)
|+|+|+|++|++|+..+..|.+ ||||+|.++. ..+|++++++.||+|||+|.|.+.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~----------------------DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~ 58 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKI----------------------DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT 58 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCc----------------------CCEEEEEECCEEeeceeEECCCcCCccCceEEEEec
Confidence 8999999999999998876654 9999999964 467888899999999999999987
Q ss_pred cCCceEEEEEEEeCCCCCCcceeEEEEEeceeccCC
Q 004872 264 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 299 (726)
Q Consensus 264 ~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~ 299 (726)
...+.|.|+|||++.. .++++||++.++|.++...
T Consensus 59 ~~~~~L~v~v~d~~~~-~~d~~IG~~~~~l~~l~~~ 93 (120)
T cd04045 59 SPNQKITLEVMDYEKV-GKDRSLGSVEINVSDLIKK 93 (120)
T ss_pred CCCCEEEEEEEECCCC-CCCCeeeEEEEeHHHhhCC
Confidence 7778999999999986 7889999999999999864
No 139
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.60 E-value=8.7e-15 Score=131.18 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=85.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEE
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 457 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~ 457 (726)
+.|.|+|++|++|..++ ..||||+|.+|+++.+|++. + .||.|||.|.|.+.+....|.|+|||++...|++||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~ 77 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGT 77 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEE
Confidence 37999999999997643 46899999999999999999 6 5999999999998777667999999998779999999
Q ss_pred EEEEccccccCCe--eeeeeeccc
Q 004872 458 ARVNLEGLVEGSV--RDIWVPLEK 479 (726)
Q Consensus 458 ~~i~L~~l~~~~~--~~~w~~L~~ 479 (726)
+.++|.++..+.. ...||+|..
T Consensus 78 v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 78 VWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEEhHHcccCCCCCCCccEecCh
Confidence 9999999986553 479999985
No 140
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=1.5e-14 Score=133.01 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=88.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 449 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~ 449 (726)
+.|.|+|++|+||+..+..+.+||||++++. ...+||+++ ++.||.|||+|.|.+... ...|.|.|||.+.
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 3799999999999999988999999999993 468999999 999999999999997543 4689999999986
Q ss_pred C---CCcceEEEEEEccccccCCeeeeeeecc
Q 004872 450 F---GDENMGSARVNLEGLVEGSVRDIWVPLE 478 (726)
Q Consensus 450 ~---~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 478 (726)
. ++++||++.+++.++..+.....||+|.
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 3 7899999999999998777788999884
No 141
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=1.6e-14 Score=132.45 Aligned_cols=100 Identities=21% Similarity=0.414 Sum_probs=88.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecCC-
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF- 450 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~- 450 (726)
.|.|+|++|+||+..+..+.+||||++++ ++..++|+++ ++.||.|||+|.|.+.. ....|.++|||++..
T Consensus 17 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~ 96 (125)
T cd08386 17 TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFS 96 (125)
T ss_pred EEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCc
Confidence 79999999999999988899999999999 4568899999 99999999999997533 245799999999988
Q ss_pred CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872 451 GDENMGSARVNLEGLVEGSVRDIWVPLEK 479 (726)
Q Consensus 451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 479 (726)
++++||++.++++++..+.....|++|.+
T Consensus 97 ~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 97 RNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCcEeeEEEEecccccCCCCcceEEecCC
Confidence 78999999999999987777889999863
No 142
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.59 E-value=6.4e-15 Score=133.80 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=87.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C----CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeec
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE 448 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~ 448 (726)
+.|.|+|++|+||...+..+.+||||++++ + +..+||++. ++.||+|||+|.|.+.. ....|.|.||+.+
T Consensus 14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG 93 (124)
T ss_pred CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence 489999999999999888899999999999 2 248999999 99999999999999765 3679999999998
Q ss_pred CC-CCcceEEEEEEccccccCC-eeeeeeec
Q 004872 449 IF-GDENMGSARVNLEGLVEGS-VRDIWVPL 477 (726)
Q Consensus 449 ~~-~d~~iG~~~i~L~~l~~~~-~~~~w~~L 477 (726)
.. ++++||.+.++|+++.... ....||+|
T Consensus 94 ~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 87 8899999999999996543 56789976
No 143
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.59 E-value=6.6e-15 Score=131.59 Aligned_cols=99 Identities=24% Similarity=0.478 Sum_probs=88.2
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEeecccc-CCCCCce-eeEEEEEeeCC---ceeEEEEEEeecCC-CCc
Q 004872 381 INVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVW-NQKFELDEIGG---GECLMVKCYNEEIF-GDE 453 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~-~g~~dpyv~v~lg~~~~kT~~~-~t~nP~w-ne~f~f~v~~~---~~~l~i~V~d~~~~-~d~ 453 (726)
|.|+|++|++|+.++. .|.+||||++++++..+||+++ ++.||.| ||.|.|.+... ...|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999998874 6889999999999899999999 9999999 99999997663 46899999999987 789
Q ss_pred ceEEEEEEcccccc---CCeeeeeeeccc
Q 004872 454 NMGSARVNLEGLVE---GSVRDIWVPLEK 479 (726)
Q Consensus 454 ~iG~~~i~L~~l~~---~~~~~~w~~L~~ 479 (726)
+||++.+++.++.. +...+.||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999987 345789999864
No 144
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.59 E-value=1.4e-14 Score=133.02 Aligned_cols=108 Identities=37% Similarity=0.663 Sum_probs=93.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecC---------
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEI--------- 449 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~--------- 449 (726)
.|.|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.|||.|.|.+..+...|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999999988999999999999889999999 9999999999999886666789999999874
Q ss_pred ---CCCcceEEEEEEccccccCCeeeeeeeccccc-----cceeEEEE
Q 004872 450 ---FGDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQI 489 (726)
Q Consensus 450 ---~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~ 489 (726)
..+++||.+.+++.++. .....||+|.+.. +|+|.+++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 15899999999999874 3346999998632 57777753
No 145
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=3.1e-14 Score=132.03 Aligned_cols=109 Identities=21% Similarity=0.304 Sum_probs=93.8
Q ss_pred ceEEEEEEEEeecCcccccCCCCccEEEEEECCeE-EEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCC-CC---
Q 004872 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNA-LL--- 581 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~-~~--- 581 (726)
...|.|.|++|++|++++ ||||.+.+++++ .||+++.++.||.|+|.|.|... -..+.|.|++.+. .+
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 467999999999999864 899999999987 59999999999999999999974 3679999986553 22
Q ss_pred CCCeeEEEEEEccccCCCCceeeEEecCC---C----------CCeEEEEEEEE
Q 004872 582 ASSSIGDCVVEYQRLPPNQMADKWIPLQG---V----------RKGEIHVLITR 622 (726)
Q Consensus 582 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~---~----------~~G~i~l~l~~ 622 (726)
++.+||.+.||+.++..+...++||+|.+ . ..+.|++++.|
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf 138 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARY 138 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEE
Confidence 57899999999999999999999999963 1 23799999998
No 146
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=4.8e-15 Score=139.15 Aligned_cols=105 Identities=12% Similarity=0.209 Sum_probs=85.9
Q ss_pred CCceeeecCcc---cc---ccccccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc
Q 004872 166 EPRRRCYSLPA---VD---LRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE 239 (726)
Q Consensus 166 ~P~~~~~~l~~---~~---~~~~~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~ 239 (726)
+|+.+.++..+ +. .....+.+.|.|+|++|++|...|..|.+ ||||+|.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyv~v~l~~ 59 (153)
T cd08676 2 AQQAFGVSPEEHEALLERVREAEPPIFVLKVTVIEAKGLLAKDVNGFS----------------------DPYCMLGIVP 59 (153)
T ss_pred hHHhhCCCHHHHHHHHHHHHhcCCCeEEEEEEEEeccCCcccCCCCCC----------------------CceEEEEEcc
Confidence 46664444432 22 24557889999999999999999877765 9999999852
Q ss_pred ------------------------------EEeeeecCCCCCCcccceeEEEEecC-CceEEEEEEEeCCCCCCcceeEE
Q 004872 240 ------------------------------LTRRTDARPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTS 288 (726)
Q Consensus 240 ------------------------------~~rTt~i~~t~nP~WnEtf~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~ 288 (726)
..+|++++++.||+|||+|.|.+... .+.|.|+|||++ +++||.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~ 134 (153)
T cd08676 60 ASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGC 134 (153)
T ss_pred cccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC-----CCeEEE
Confidence 25788889999999999999999765 679999999997 689999
Q ss_pred EEEeceecc
Q 004872 289 CEVKMKYVA 297 (726)
Q Consensus 289 ~~i~L~~l~ 297 (726)
+.+++.++.
T Consensus 135 v~i~l~~l~ 143 (153)
T cd08676 135 VNIPLKDLP 143 (153)
T ss_pred EEEEHHHhC
Confidence 999999987
No 147
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=1e-14 Score=133.27 Aligned_cols=111 Identities=27% Similarity=0.352 Sum_probs=89.2
Q ss_pred EEEEEEEEeecCcccccCCCCccEEEEEECCeE--EEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872 511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 585 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~--~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~ 585 (726)
.|+|.|++|++|++.+..|.+||||++++++.+ .+|+++++++||+|||+|.|.+. ...|.|+|||+|.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999999999999999998864 57888999999999999999863 5689999999999999999
Q ss_pred eEEEEEEccccCCCCceeeEEecCC--CCCeEEEEEEEE
Q 004872 586 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR 622 (726)
Q Consensus 586 lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~i~l~l~~ 622 (726)
||++.+++++.... ..-.|..+.. ...|.++..-++
T Consensus 81 iG~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd04037 81 IGETVIDLEDRFFS-KHRATCGLPPTYEESGPNQWRDSL 118 (124)
T ss_pred eEEEEEeecccccc-hHHHhccCCCcccccCceecCccc
Confidence 99999999876531 1112222221 245777766655
No 148
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.58 E-value=2.7e-14 Score=131.02 Aligned_cols=111 Identities=25% Similarity=0.489 Sum_probs=97.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCc
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE 453 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~ 453 (726)
.|.|+|++|++|+..+..+.+||||++.++ ...+||+++ ++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 689999999999999888999999999984 347899999 999999999999998774 67899999999987 889
Q ss_pred ceEEEEEEcccccc---CCeeeeeeeccccccceeEEEEEEE
Q 004872 454 NMGSARVNLEGLVE---GSVRDIWVPLEKVNTGELRLQIEAT 492 (726)
Q Consensus 454 ~iG~~~i~L~~l~~---~~~~~~w~~L~~~~~G~I~l~~~~~ 492 (726)
+||++.++|.++.. +.....|++|.+ .|++++.+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 99999999998643 335679999976 79999998876
No 149
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.58 E-value=4.8e-15 Score=166.47 Aligned_cols=358 Identities=15% Similarity=0.145 Sum_probs=218.8
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-cEEeeeecCCCCCCcccceeEEE---
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMV--- 261 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~~~rTt~i~~t~nP~WnEtf~~~--- 261 (726)
--+++.|+.|+.|...+..+-+ |||+.|.+- ..+.|-++.+|+||.||++..|.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~s----------------------dp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~e 263 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDES----------------------DPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVE 263 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCC----------------------CchhhhhcccccceeEeecCcCCCCccceeecccee
Confidence 3467889999999988876654 899999884 56677788999999999998776
Q ss_pred Eec-------CCceEEEEEEEeCCCCCCcceeEEEEEeceeccCCCcceeecCCCCccccccccccCceeeeeeecCC--
Q 004872 262 LHE-------ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG-- 332 (726)
Q Consensus 262 v~~-------~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 332 (726)
+.. .-..+.|+|||.|+. .+++++|.+.....-..+-+. -+| .+.-+
T Consensus 264 i~ge~~~~~~~ppi~v~e~yd~dr~-g~~ef~gr~~~~p~V~~~~p~------------lkw-----------~p~~rg~ 319 (1105)
T KOG1326|consen 264 IYGEAHLVLKNPPIRVFEVYDLDRS-GINEFKGRKKQRPYVMVQCPA------------LKW-----------VPTMRGA 319 (1105)
T ss_pred ecCccchhhcCCCeEEEEeehhhhh-chHHhhcccccceEEEecCCc------------cce-----------EEeeccc
Confidence 211 134789999999986 899999988754432222110 011 11111
Q ss_pred ccccEEEEEEEeeeeecCCCCCCCCCccCCCCcccccCCcc-c-cCCccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 004872 333 VNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNF-I-SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK 410 (726)
Q Consensus 333 ~~~G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~-~~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~ 410 (726)
...|++.+. .+.+.-+. +..-.+.........-|.- . ....+.+.|--..-+|+..........|-+-+.+|.
T Consensus 320 ~l~gd~l~a----~eliq~~~-~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~ 394 (1105)
T KOG1326|consen 320 FLDGDVLIA----AELIQIGK-PIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGG 394 (1105)
T ss_pred ccccchhHH----HHHHhhcC-CCCCCCcccccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCC
Confidence 112332211 10011010 0000000011111111110 0 001112333333345555444455677888888988
Q ss_pred eEeecccc--CCCCCceeeEEEEEeeC-C-----ceeEEEEEEeecCC-CCcceEEEEEEc-cccccC------------
Q 004872 411 IVQRTRTA--HSPNHVWNQKFELDEIG-G-----GECLMVKCYNEEIF-GDENMGSARVNL-EGLVEG------------ 468 (726)
Q Consensus 411 ~~~kT~~~--~t~nP~wne~f~f~v~~-~-----~~~l~i~V~d~~~~-~d~~iG~~~i~L-~~l~~~------------ 468 (726)
+..++..+ .-.||.|...+.+.... + ...+.++|.|.+.+ .....|+|.+.- ....-.
T Consensus 395 e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~ 474 (1105)
T KOG1326|consen 395 ERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFA 474 (1105)
T ss_pred ceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCC
Confidence 88888777 77899998776655332 2 45788999998887 677888877651 111100
Q ss_pred ---------C-------eeeeeeeccc-----------------c-----------ccceeEEEEEEEEecC--------
Q 004872 469 ---------S-------VRDIWVPLEK-----------------V-----------NTGELRLQIEATRVDD-------- 496 (726)
Q Consensus 469 ---------~-------~~~~w~~L~~-----------------~-----------~~G~I~l~~~~~~~~~-------- 496 (726)
. ....+++... . .++..++.+.....+.
T Consensus 475 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~ 554 (1105)
T KOG1326|consen 475 SDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQ 554 (1105)
T ss_pred CCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhh
Confidence 0 0011111111 0 0122334443222110
Q ss_pred ------------C--CC--------CC--------------C---------CCCCCCceEEEEEEEEeecCcccccCCCC
Q 004872 497 ------------N--EG--------SR--------------G---------QNIGSGNGWIELVIVEARDLVAADLRGTS 531 (726)
Q Consensus 497 ------------~--~~--------~~--------------~---------~~~~~~~g~L~v~v~~a~~L~~~d~~g~~ 531 (726)
. +. .+ . +...+..-..+|.+++|.+|.+.|.+|.+
T Consensus 555 D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~a 634 (1105)
T KOG1326|consen 555 DWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDA 634 (1105)
T ss_pred hccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCc
Confidence 0 00 00 0 01124445678999999999999999999
Q ss_pred ccEEEEEECCeE--EEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEcc
Q 004872 532 DPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQ 594 (726)
Q Consensus 532 DPyv~v~~~~~~--~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~~~i~l~ 594 (726)
|||+++.+|++. -++..+.+|+||+|.+.|.+... ...+.++|||+|.++.|+.||+..++|+
T Consensus 635 dpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 635 DPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred CceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence 999999999876 57888999999999998888753 6789999999999999999999999886
No 150
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=2.7e-14 Score=131.23 Aligned_cols=110 Identities=28% Similarity=0.387 Sum_probs=97.6
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC-CCcceEEEE
Q 004872 385 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDENMGSAR 459 (726)
Q Consensus 385 V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-~d~~iG~~~ 459 (726)
|++|++|+. ..|.+||||++++++..++|+++ ++.||.|||.|.|.+.. ....|.|+|||++.. ++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 678999988 57899999999999899999999 99999999999999864 367899999999887 789999999
Q ss_pred EEccccccCCeeeeeeecccc----ccceeEEEEEEEEecC
Q 004872 460 VNLEGLVEGSVRDIWVPLEKV----NTGELRLQIEATRVDD 496 (726)
Q Consensus 460 i~L~~l~~~~~~~~w~~L~~~----~~G~I~l~~~~~~~~~ 496 (726)
++++++..+.....|++|.+. ..|+|+++++|.+.+.
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999988888899999743 2589999999997654
No 151
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.57 E-value=3e-14 Score=130.12 Aligned_cols=99 Identities=21% Similarity=0.393 Sum_probs=87.0
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeec
Q 004872 379 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 448 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d-~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~ 448 (726)
+.|.|+|++|+||+..+ ..+.+||||++++. ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 93 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD 93 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence 38999999999999888 67899999999982 146899999 999999999999997653 568999999998
Q ss_pred CC-CCcceEEEEEEccccccCCeeeeeeec
Q 004872 449 IF-GDENMGSARVNLEGLVEGSVRDIWVPL 477 (726)
Q Consensus 449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L 477 (726)
.. ++++||++.++|.++..+.....||+|
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 94 RFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCcCCceeeEEEEecccccccCCCccEEEC
Confidence 87 789999999999999777777899986
No 152
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=4.1e-14 Score=128.04 Aligned_cols=105 Identities=31% Similarity=0.525 Sum_probs=85.6
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecCC-----CeEEEEEEECCCCCCCCe
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDDG-----SPLTLHVRDHNALLASSS 585 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~~-----~~l~i~V~d~d~~~~d~~ 585 (726)
|+|+|++|++|+.. |.+||||++++++. .++|+++++ .||.|||+|.|.+.. ..|.+.+||.+..+++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999885 479999999 999999999999854 357778888877666666
Q ss_pred eEEEEEEccccCCCCceeeEEecCCC-----CCeEEEEEEEE
Q 004872 586 IGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR 622 (726)
Q Consensus 586 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~ 622 (726)
+|.+.+ ..+..+...+.|++|.+. ..|+|++++.|
T Consensus 78 ~g~v~l--~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVAL--SKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEe--cCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 666554 455556678899999753 36999999875
No 153
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.57 E-value=2e-14 Score=131.23 Aligned_cols=108 Identities=17% Similarity=0.330 Sum_probs=91.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-C--Ccce
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G--DENM 455 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~--d~~i 455 (726)
|+|+|++|++|..++..+.+||||+++++ .+.+||+++ ++.||.|||.|.|.+.. ...|.|+|||++.. . +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999999988999999999995 789999999 99999999999999755 67899999999887 3 5799
Q ss_pred EEEEEEccccccCC-eeeeeeeccccc-------cceeEEEE
Q 004872 456 GSARVNLEGLVEGS-VRDIWVPLEKVN-------TGELRLQI 489 (726)
Q Consensus 456 G~~~i~L~~l~~~~-~~~~w~~L~~~~-------~G~I~l~~ 489 (726)
|++.+++.++.... ....||+|.... .|+|.+++
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999997554 346799996532 46666553
No 154
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=1.4e-14 Score=135.90 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=89.2
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC--CceeEEEE
Q 004872 381 INVTVVEGKDLMPKDKS--------------GKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVK 443 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~--------------g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~--~~~~l~i~ 443 (726)
|.|+|++|++|+.+|.. +.+||||+|.++++..||+++ ++.||+|||.|.|.+.. ....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998754 368999999999899999999 99999999999999654 36789999
Q ss_pred EEeecCC-CCcceEEEEEEccccccCCe-------eeeeeeccccccce
Q 004872 444 CYNEEIF-GDENMGSARVNLEGLVEGSV-------RDIWVPLEKVNTGE 484 (726)
Q Consensus 444 V~d~~~~-~d~~iG~~~i~L~~l~~~~~-------~~~w~~L~~~~~G~ 484 (726)
|||++.. +|++||.+.+++.++...+. ...|+.|.+...+.
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 9999988 89999999999999876542 35788887765543
No 155
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.56 E-value=4.4e-14 Score=129.07 Aligned_cols=101 Identities=19% Similarity=0.371 Sum_probs=89.3
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC
Q 004872 379 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF 450 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d-~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~ 450 (726)
+.|.|+|++|+||+.++ ..+.+||||++++ +...++|+++ ++.||+|||.|.|.+... ...|.|+|||.+..
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~ 93 (123)
T cd08390 14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF 93 (123)
T ss_pred CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC
Confidence 38999999999999988 6889999999998 3457899999 999999999999997553 46899999999887
Q ss_pred -CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872 451 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 479 (726)
Q Consensus 451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 479 (726)
++++||++.++|.++........|++|++
T Consensus 94 ~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 94 SRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 78999999999999988888889999863
No 156
>PLN03008 Phospholipase D delta
Probab=99.56 E-value=2.2e-14 Score=162.35 Aligned_cols=98 Identities=22% Similarity=0.385 Sum_probs=86.5
Q ss_pred CCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeE
Q 004872 529 GTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW 605 (726)
Q Consensus 529 g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w 605 (726)
+++||||+|.++++ ..||+++++++||+|||+|.|.+. ...|.|+|+|+|.++ +++||++.||+.++..++..+.|
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~W 153 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGW 153 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEE
Confidence 47899999999876 459999999999999999999984 578999999999997 58999999999999999999999
Q ss_pred EecCC------CCCeEEEEEEEEEecCcc
Q 004872 606 IPLQG------VRKGEIHVLITRKVPELD 628 (726)
Q Consensus 606 ~~L~~------~~~G~i~l~l~~~~p~~~ 628 (726)
++|.+ +.+|+|+++++| .|..+
T Consensus 154 l~Ll~~~~kp~k~~~kl~v~lqf-~pv~~ 181 (868)
T PLN03008 154 FPVLGASGKPPKAETAIFIDMKF-TPFDQ 181 (868)
T ss_pred EEccccCCCCCCCCcEEEEEEEE-EEccc
Confidence 99963 235899999999 66544
No 157
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.56 E-value=2e-14 Score=130.63 Aligned_cols=95 Identities=24% Similarity=0.344 Sum_probs=84.9
Q ss_pred EEEEeecCcccccCCCCccEEEEEECCe-------EEEeEeeeCCCCCeeeeEEEEec---CCCeEEEEEEECCC----C
Q 004872 515 VIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPD---DGSPLTLHVRDHNA----L 580 (726)
Q Consensus 515 ~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~~~f~v---~~~~l~i~V~d~d~----~ 580 (726)
..++|++|+..+..|.+||||++++.+. .++|+++++++||+|||+|.|.+ ....|.|+|||+|. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 4588999999999999999999999654 48999999999999999999975 35679999999997 8
Q ss_pred CCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872 581 LASSSIGDCVVEYQRLPPNQMADKWIPLQ 609 (726)
Q Consensus 581 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 609 (726)
++|++||++.+++.++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 89999999999999998877788899994
No 158
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.8e-15 Score=150.19 Aligned_cols=201 Identities=26% Similarity=0.342 Sum_probs=163.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC--C--ceeEEEEEEeecC
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG--G--GECLMVKCYNEEI 449 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~--~--~~~l~i~V~d~~~ 449 (726)
.+..++.+|++|.+++.++..|||+++.+. -...+|++. ++.||.|+|+..+.... + ...+++.|.|++.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 689999999999999999999999999983 135889999 99999999986655332 2 4578889999988
Q ss_pred C-CCcceEEEEEEccccccCCe--eeeeeec--c--c------cccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEE
Q 004872 450 F-GDENMGSARVNLEGLVEGSV--RDIWVPL--E--K------VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVI 516 (726)
Q Consensus 450 ~-~d~~iG~~~i~L~~l~~~~~--~~~w~~L--~--~------~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v 516 (726)
+ .++++|+..+++..+..... -..|+.- . . ...|+|.+++.|. .....+.|++
T Consensus 174 ~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------s~~~~l~vt~ 239 (362)
T KOG1013|consen 174 KTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------STTPGLIVTI 239 (362)
T ss_pred cccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------cCCCceEEEE
Confidence 8 88999999999988865442 1222221 1 1 2368888888765 5668899999
Q ss_pred EEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCee
Q 004872 517 VEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSI 586 (726)
Q Consensus 517 ~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~l 586 (726)
.++.+|...|.+|.+||||..++.. .+++|++.++|+||+||+.|.|.+. ...+.|.|||++.....+++
T Consensus 240 iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~ 319 (362)
T KOG1013|consen 240 IRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSI 319 (362)
T ss_pred EEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCC
Confidence 9999999999999999999999843 3679999999999999999999984 57899999999988778899
Q ss_pred EEEEEEcc
Q 004872 587 GDCVVEYQ 594 (726)
Q Consensus 587 G~~~i~l~ 594 (726)
|-+...+.
T Consensus 320 GG~~~g~~ 327 (362)
T KOG1013|consen 320 GGSMLGGY 327 (362)
T ss_pred Cccccccc
Confidence 87766543
No 159
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=3.3e-14 Score=129.86 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=77.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEccE---EeeeecCCCCCCcccceeEEEEe
Q 004872 187 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL---TRRTDARPGSDPRWDSMFNMVLH 263 (726)
Q Consensus 187 vL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~---~rTt~i~~t~nP~WnEtf~~~v~ 263 (726)
+|+|+|++|++|+..+..|.+ ||||+|+++.. .||++++++.||+|||+|.|.+.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~----------------------DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~ 58 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKS----------------------DPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT 58 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCC----------------------CcEEEEEECCeeccceeeEEECCCCCccceEEEEEec
Confidence 589999999999998876655 99999999743 46788889999999999999986
Q ss_pred cC-CceEEEEEEEeCCCCCCcceeEEEEEeceecc
Q 004872 264 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 297 (726)
Q Consensus 264 ~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~ 297 (726)
.. .+.|.|+|||+|.. +++++||++.++|++..
T Consensus 59 ~~~~~~L~~~V~d~d~~-~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 59 LPGNSILKISVMDYDLL-GSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCCCEEEEEEEECCCC-CCCceeEEEEEeecccc
Confidence 55 67899999999986 78999999999998765
No 160
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.55 E-value=8e-14 Score=123.35 Aligned_cols=94 Identities=16% Similarity=0.371 Sum_probs=75.1
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEEC-------C
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDH-------N 578 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~-------d 578 (726)
|.|+|.+|+||+ +.+||||++.+.+ .+.+|+++++|+||+|||+|.|++. ...|.+.|||+ |
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEccccccccc
Confidence 579999999995 4689999999953 3689999999999999999999986 57899999998 5
Q ss_pred CCCCCCeeEEEEEEcc--ccCCCCceeeEEecCC
Q 004872 579 ALLASSSIGDCVVEYQ--RLPPNQMADKWIPLQG 610 (726)
Q Consensus 579 ~~~~d~~lG~~~i~l~--~l~~~~~~~~w~~L~~ 610 (726)
..+.|+.+|.+.+.|+ .+........-+.|.+
T Consensus 76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~ 109 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG 109 (118)
T ss_pred ccCcccEEEEEEEEECHHHhccCCeeEEEEEecC
Confidence 6688999988888775 3444333344454443
No 161
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.54 E-value=8e-14 Score=127.53 Aligned_cols=102 Identities=27% Similarity=0.430 Sum_probs=92.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCceeeEEEEEeeCC----ceeEEEEEEeecCC-C
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG----GECLMVKCYNEEIF-G 451 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~~-~ 451 (726)
|.|.|+|++|++|+..+..+.+||||++++++..++|++. + +.||.||+.|.|.+... ...|.|+|||.+.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 4799999999999988888999999999999889999988 4 89999999999998775 57899999999887 8
Q ss_pred CcceEEEEEEccccccCCeeeeeeecccc
Q 004872 452 DENMGSARVNLEGLVEGSVRDIWVPLEKV 480 (726)
Q Consensus 452 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 480 (726)
+++||++.+++.++..++....|++|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999988778899999874
No 162
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.53 E-value=5.3e-14 Score=126.01 Aligned_cols=97 Identities=20% Similarity=0.377 Sum_probs=85.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-----ceeEEEEEEeecCC-C
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF-G 451 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-----~~~l~i~V~d~~~~-~ 451 (726)
+.|+|+|++|++|. .|.+||||+++++++.++|+++ ++.||.|||.|.|.+..+ ...|.|+|||++.. +
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~ 79 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS 79 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence 47999999999998 5789999999999999999999 999999999999997543 36899999999987 7
Q ss_pred CcceEEEEEEccccccCC---eeeeeeeccc
Q 004872 452 DENMGSARVNLEGLVEGS---VRDIWVPLEK 479 (726)
Q Consensus 452 d~~iG~~~i~L~~l~~~~---~~~~w~~L~~ 479 (726)
+++||++.++|+++..+. ....|++|.+
T Consensus 80 ~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 899999999999997664 4678999875
No 163
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.53 E-value=1.5e-13 Score=126.91 Aligned_cols=89 Identities=13% Similarity=0.254 Sum_probs=74.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--------------cEEeeeecCCCCCC
Q 004872 187 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--------------ELTRRTDARPGSDP 252 (726)
Q Consensus 187 vL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--------------~~~rTt~i~~t~nP 252 (726)
+..|++++|+||+ .+..|.+ ||||++++. +..+|+++++++||
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~----------------------DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 58 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNP----------------------DPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINP 58 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCC----------------------CceEEEEEECCCcccccccccccceeeeeeEcCCCCC
Confidence 4689999999998 5666655 999999993 25788889999999
Q ss_pred cc-cceeEEEEecCCceEEEEEEEeCCCCCC---cceeEEEEEeceeccCCC
Q 004872 253 RW-DSMFNMVLHEETGTVRFNLYECIPGHVK---YDYLTSCEVKMKYVADDS 300 (726)
Q Consensus 253 ~W-nEtf~~~v~~~~~~L~~~V~D~d~~~~~---dd~lG~~~i~L~~l~~~~ 300 (726)
+| ||+|.|.+. .++.|.|+|||++.. .+ +++||.+.++|.++....
T Consensus 59 ~W~nE~f~f~v~-~~~~L~v~V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~ 108 (137)
T cd08691 59 VWHREQFVFVGL-PTDVLEIEVKDKFAK-SRPIIRRFLGKLSIPVQRLLERH 108 (137)
T ss_pred ceEceEEEEEcC-CCCEEEEEEEecCCC-CCccCCceEEEEEEEHHHhcccc
Confidence 99 999999984 467999999998753 22 799999999999998643
No 164
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=4.2e-14 Score=126.57 Aligned_cols=99 Identities=26% Similarity=0.410 Sum_probs=87.1
Q ss_pred CCCCCCcEEEEEECC-eEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCCcceEEEEEEccccccC-Cee
Q 004872 396 KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEG-SVR 471 (726)
Q Consensus 396 ~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~-~~~ 471 (726)
.+|.+||||++++++ ..++|+++ ++.||.|||.|.|.+.+. ...|.|.|||++..++++||.+.++|.++... ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~ 88 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG 88 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence 468899999999976 46899999 999999999999998775 67899999999877889999999999999654 355
Q ss_pred eeeeeccccccceeEEEEEEEEe
Q 004872 472 DIWVPLEKVNTGELRLQIEATRV 494 (726)
Q Consensus 472 ~~w~~L~~~~~G~I~l~~~~~~~ 494 (726)
..||+|.+...|+|++++.|.|+
T Consensus 89 ~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 89 QQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred ceeEECCCCCCCEEEEEEEEecC
Confidence 79999998788999999999864
No 165
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.53 E-value=4.5e-14 Score=130.74 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=79.7
Q ss_pred cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--------cEEeeeecCCCCCCccc
Q 004872 184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--------ELTRRTDARPGSDPRWD 255 (726)
Q Consensus 184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--------~~~rTt~i~~t~nP~Wn 255 (726)
..+.|.|+|++|++|+..+..|.+ ||||+|++. ...||+++++|.||+||
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~----------------------dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wn 71 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSS----------------------DPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFD 71 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCC----------------------CCEEEEEEECCCcCccccccccccCcCCCCCccC
Confidence 458899999999999988766654 999999994 25688889999999999
Q ss_pred ceeEEEEecC-----CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872 256 SMFNMVLHEE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 298 (726)
Q Consensus 256 Etf~~~v~~~-----~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~ 298 (726)
|+|.|.+... ...|.|+|||++.. .++++||++.++|+++..
T Consensus 72 E~f~f~i~~~~~~~~~~~l~~~V~d~d~~-~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 72 ESFEFNVPPEQCSVEGALLLFTVKDYDLL-GSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred CEEEEEechhhcccCCCEEEEEEEecCCC-CCCcEeEEEEEeHHHCCc
Confidence 9999998652 45899999999986 789999999999999874
No 166
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.53 E-value=9e-14 Score=128.50 Aligned_cols=107 Identities=32% Similarity=0.494 Sum_probs=94.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCC
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF 450 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~ 450 (726)
+.|.|+|++|++|+..+..+.+||||++.+. ...++|+++ ++.||.||++|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 3799999999999988888899999999994 368999999 999999999999997653 56899999999877
Q ss_pred -CCcceEEEEEEccccccCCeeeeeeeccccccceeE
Q 004872 451 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 486 (726)
Q Consensus 451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~ 486 (726)
++++||++.+++.++... ....||+|.+...|+..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~~ 128 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEYY 128 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCccccccc
Confidence 889999999999999855 66799999988878653
No 167
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.52 E-value=1.5e-13 Score=127.56 Aligned_cols=112 Identities=18% Similarity=0.383 Sum_probs=95.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-eecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-----C
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-----G 451 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~-~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-----~ 451 (726)
..|.|.|.+|++|+.++ +|||+|.+++.. .||+++ ++.||.|+|.|.|.+......+.|.||..+.. +
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccC
Confidence 37999999999998864 799999997775 699999 99999999999998766677899999865432 5
Q ss_pred CcceEEEEEEccccccCCeeeeeeeccccc-------------cceeEEEEEEEEec
Q 004872 452 DENMGSARVNLEGLVEGSVRDIWVPLEKVN-------------TGELRLQIEATRVD 495 (726)
Q Consensus 452 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-------------~G~I~l~~~~~~~~ 495 (726)
+.+||.+.|++.++..+...+.||+|.+.. .+.|+++++|.++.
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 789999999999999888889999997532 26899999998653
No 168
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.52 E-value=5.5e-14 Score=128.81 Aligned_cols=107 Identities=24% Similarity=0.361 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc--CCCCCceeeEEEEEeeCC-----ceeEEEEEEeecCC-
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA--HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF- 450 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~--~t~nP~wne~f~f~v~~~-----~~~l~i~V~d~~~~- 450 (726)
+|.|+|++|++|+..+..+.+||||++++++ ..++|++. ++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3899999999999888889999999999977 88999997 589999999999998776 57999999999886
Q ss_pred CCcceEEEEEEccccccCCe-----eeeeeecccc---ccceeE
Q 004872 451 GDENMGSARVNLEGLVEGSV-----RDIWVPLEKV---NTGELR 486 (726)
Q Consensus 451 ~d~~iG~~~i~L~~l~~~~~-----~~~w~~L~~~---~~G~I~ 486 (726)
++++||++.+++.++..+.. ...||+|... ..|.|+
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~ 124 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN 124 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence 88999999999999986553 4689999853 356665
No 169
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.52 E-value=6.3e-14 Score=123.98 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=66.0
Q ss_pred EEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCcccceeEEE
Q 004872 188 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDSMFNMV 261 (726)
Q Consensus 188 L~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnEtf~~~ 261 (726)
|.|+|++|+||+. .+ ||||++++. ...+|+++++|+||+|||+|.|.
T Consensus 1 L~V~V~~A~~L~~-----~s----------------------DPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~ 53 (118)
T cd08686 1 LNVIVHSAQGFKQ-----SA----------------------NLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE 53 (118)
T ss_pred CEEEEEeCCCCCC-----CC----------------------CCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE
Confidence 6899999999963 23 999999993 24789999999999999999999
Q ss_pred EecCCceEEEEEEEe-------CCCCCCcceeEEEEEece
Q 004872 262 LHEETGTVRFNLYEC-------IPGHVKYDYLTSCEVKMK 294 (726)
Q Consensus 262 v~~~~~~L~~~V~D~-------d~~~~~dd~lG~~~i~L~ 294 (726)
+.+ .+.|++.|||+ |.. .+|+++|++.+.|.
T Consensus 54 l~~-s~~L~~~v~d~~~~~~~~d~~-~~d~~~G~g~i~Ld 91 (118)
T cd08686 54 LEG-SQTLRILCYEKCYSKVKLDGE-GTDAIMGKGQIQLD 91 (118)
T ss_pred eCC-CCEEEEEEEEccccccccccc-CcccEEEEEEEEEC
Confidence 964 78999999998 343 68899988887773
No 170
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.50 E-value=3.4e-13 Score=126.41 Aligned_cols=113 Identities=24% Similarity=0.307 Sum_probs=93.4
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeCC---------ceeEEEE
Q 004872 381 INVTVVEGKD--LMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---------GECLMVK 443 (726)
Q Consensus 381 L~V~V~~a~~--L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~~---------~~~l~i~ 443 (726)
..++|..|++ |+..+..+.+||||++++ +.+.+||+++ +|.||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566666666 677777889999999987 3469999999 999999999999997543 3579999
Q ss_pred EEeecCC--CCcceEEEEEEccccccCCeeeeeeecccc---ccceeEEEEEEEE
Q 004872 444 CYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKV---NTGELRLQIEATR 493 (726)
Q Consensus 444 V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~---~~G~I~l~~~~~~ 493 (726)
|||++.+ +|++||++.++|..+..+.....|++|... -.|+|.+++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 9999986 799999999999999877777789998742 3699999998763
No 171
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.50 E-value=9.7e-14 Score=128.65 Aligned_cols=90 Identities=14% Similarity=0.253 Sum_probs=77.9
Q ss_pred ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCcccc
Q 004872 183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDS 256 (726)
Q Consensus 183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnE 256 (726)
...|.|.|+|++|+||+..+..|.+ ||||+|.+. ...+|++++++.||+|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~----------------------DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne 67 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYS----------------------DPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNE 67 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCC----------------------CcEEEEEEEcCCCccCCceeeeEeccCCCCccc
Confidence 3569999999999999998876654 999999994 246788899999999999
Q ss_pred eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEecee
Q 004872 257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 295 (726)
Q Consensus 257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~ 295 (726)
+|.|.+... ...|.|+|||+|.. .++++||.+.+++..
T Consensus 68 ~f~f~~~~~~l~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~ 108 (133)
T cd08384 68 EFFYDIKHSDLAKKTLEITVWDKDIG-KSNDYIGGLQLGINA 108 (133)
T ss_pred EEEEECCHHHhCCCEEEEEEEeCCCC-CCccEEEEEEEecCC
Confidence 999998653 46899999999986 788999999999975
No 172
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=2.2e-13 Score=122.84 Aligned_cols=100 Identities=30% Similarity=0.500 Sum_probs=90.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC-CCcceE
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG 456 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~~iG 456 (726)
|.|+|++|++|+..+..+.+||||++.++ ...++|+++ ++.||.|||+|.|.+.. ....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 57899999999988888899999999995 567899999 99999999999999876 467899999999887 789999
Q ss_pred EEEEEccccccCCeeeeeeecccc
Q 004872 457 SARVNLEGLVEGSVRDIWVPLEKV 480 (726)
Q Consensus 457 ~~~i~L~~l~~~~~~~~w~~L~~~ 480 (726)
++.+++.++..+.....|++|.+.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCC
Confidence 999999999888788899999864
No 173
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.49 E-value=2.3e-14 Score=147.59 Aligned_cols=104 Identities=31% Similarity=0.506 Sum_probs=93.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCC-
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF- 450 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~- 450 (726)
.|.|+|.+|+||.++|.+|.+||||++.+ +..+++|+++ .++||+|||+|.|..... +..|.|+|||+|+.
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 79999999999999999999999999999 3458999999 999999999999998764 77999999999999
Q ss_pred CCcceEEEEEEccccccCCeeeeeeeccccccce
Q 004872 451 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 484 (726)
Q Consensus 451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~ 484 (726)
+++++|+.++.+++|...+ .+.||.|.....|+
T Consensus 261 RNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred cccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 9999999999999997544 46899988766665
No 174
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.49 E-value=1.1e-13 Score=127.88 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=82.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCe--Eeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKI--VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF 450 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~--~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~ 450 (726)
.|.|+|++|+||+..+..|.+||||++++ ++. +.||+++ ++.||+|||+|.|.+.. .+..|.|+|||++..
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~ 95 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTED 95 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCC
Confidence 79999999999999998899999999999 222 6789999 99999999999999765 367899999999987
Q ss_pred -CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872 451 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 479 (726)
Q Consensus 451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 479 (726)
++++||++.+.... .+....+|..+..
T Consensus 96 ~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 96 GKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred CCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 89999999997654 3444556766544
No 175
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.49 E-value=9.8e-14 Score=128.19 Aligned_cols=97 Identities=21% Similarity=0.333 Sum_probs=79.8
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEEC--C---eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEee
Q 004872 379 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNE 447 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~--~g~~dpyv~v~lg--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~ 447 (726)
+.|.|+|++|+||..++. .+.+||||+|++. + .++||+++ ++.||+|||.|.|.+... +..|.|+|||+
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~ 94 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQ 94 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence 379999999999998873 3559999999992 1 26789999 999999999999997663 67899999999
Q ss_pred cCC-CCcceEEEEEEccccccCCeeeeeeec
Q 004872 448 EIF-GDENMGSARVNLEGLVEGSVRDIWVPL 477 (726)
Q Consensus 448 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L 477 (726)
+.. ++++||++.+.+.. .+....+|..+
T Consensus 95 d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 95 DSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred CCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 988 89999999999975 33344456554
No 176
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.49 E-value=3.8e-13 Score=123.76 Aligned_cols=109 Identities=24% Similarity=0.351 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCcccc--cCCCCccEEEEEEC------CeEEEeEeeeCCC-CCeeeeEEEEecC---CCeEEEEEEEC
Q 004872 510 GWIELVIVEARDLVAAD--LRGTSDPYVKVQYG------DLKKRTKVIFKTL-NPQWHQTLEFPDD---GSPLTLHVRDH 577 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~------~~~~kT~v~~~t~-nP~wne~~~f~v~---~~~l~i~V~d~ 577 (726)
..|+|+|++|++|+..+ ..+.+||||++++. ..+.+|+++.++. ||.|||+|.|.+. ...|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46899999999999887 57899999999993 4568999988765 9999999999974 24699999999
Q ss_pred CCCCCCCeeEEEEEEccccCCCCceeeEEecCC-----CCCeEEEEEEEE
Q 004872 578 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR 622 (726)
Q Consensus 578 d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~ 622 (726)
+.. ++++||++.++++++..+. .|++|.+ ...|.|.+.+++
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCce---EEEEecCCCCCCCcceeEEEEEEE
Confidence 988 8999999999999996553 6888853 335889888875
No 177
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.49 E-value=1.4e-13 Score=127.87 Aligned_cols=100 Identities=26% Similarity=0.529 Sum_probs=89.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeecccc-CCCCCceeeEEEEEeeCC----------------cee
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG----------------GEC 439 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg----~~~~kT~~~-~t~nP~wne~f~f~v~~~----------------~~~ 439 (726)
|.|+|++|++|..+ ..|.+||||+++++ ...++|+++ ++.||.|||.|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999888 78999999999997 789999999 999999999999997653 458
Q ss_pred EEEEEEeecCC-CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872 440 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN 481 (726)
Q Consensus 440 l~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~ 481 (726)
|.|+|||++.. ++++||++.+++.++........||+|.+.+
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 99999999987 8999999999999998777788999998753
No 178
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.47 E-value=5.3e-13 Score=120.73 Aligned_cols=105 Identities=29% Similarity=0.475 Sum_probs=84.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC-CCcc
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDEN 454 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-~d~~ 454 (726)
|.|+|++|++|+.. +.+||||+++++++ .++|+++ + .||.|||+|.|.+.. ....|.|.+||.+.. .+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999764 6899999 9 999999999999876 346788888988765 4555
Q ss_pred eEEEEEEccccccCCeeeeeeeccccc-----cceeEEEEEE
Q 004872 455 MGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA 491 (726)
Q Consensus 455 iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~ 491 (726)
+|.+ ++..+..+.....||+|.+.. .|+|++.+.|
T Consensus 78 ~g~v--~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKV--ALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEE--EecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 6655 455555566778999998643 6999998865
No 179
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.47 E-value=1.8e-13 Score=127.18 Aligned_cols=92 Identities=18% Similarity=0.284 Sum_probs=78.1
Q ss_pred cccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc-------EEeeeecCCCCCCcc
Q 004872 182 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-------LTRRTDARPGSDPRW 254 (726)
Q Consensus 182 ~~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~-------~~rTt~i~~t~nP~W 254 (726)
.+..|.|.|+|++|+||+..+..|.+ ||||++++.. ..||++++++.||+|
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~----------------------dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvf 68 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAP----------------------DTYVKLTLLNSDGQEISKSKTSIRRGQPDPEF 68 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCC----------------------CeeEEEEEEeCCCcceeeccceeecCCCCCcE
Confidence 35679999999999999998876654 9999999931 247888899999999
Q ss_pred cceeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEeceec
Q 004872 255 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV 296 (726)
Q Consensus 255 nEtf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l 296 (726)
||+|.|.+... +..|.|.|||.|.. .++++||++.+++...
T Consensus 69 nEtF~f~i~~~~l~~~~L~~~V~~~~~~-~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 69 KETFVFQVALFQLSEVTLMFSVYNKRKM-KRKEMIGWFSLGLNSS 112 (138)
T ss_pred eeeEEEECCHHHhCccEEEEEEEECCCC-CCCcEEEEEEECCcCC
Confidence 99999998653 46999999999986 7999999999988643
No 180
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.46 E-value=2.2e-13 Score=126.69 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=77.3
Q ss_pred cccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCccc
Q 004872 182 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWD 255 (726)
Q Consensus 182 ~~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~Wn 255 (726)
.+..|.|.|+|++|++|+..+..|.+ ||||+|+++ ...+|++++++.||+||
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~----------------------dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wn 68 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMDVGGLS----------------------DPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYN 68 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcccCCCCC----------------------CCeEEEEEEECCcccceeeccceeCCCCCccc
Confidence 35669999999999999988876654 999999994 23567778999999999
Q ss_pred ceeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEeceec
Q 004872 256 SMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV 296 (726)
Q Consensus 256 Etf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l 296 (726)
|+|.|.+... ...|.|+|||+|.. +++++||++.+++...
T Consensus 69 e~f~f~i~~~~l~~~~l~~~v~d~~~~-~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 69 ESFSFEVPFEQIQKVHLIVTVLDYDRI-GKNDPIGKVVLGCNAT 111 (136)
T ss_pred ceEEEECCHHHhCCCEEEEEEEeCCCC-CCCceeEEEEECCccC
Confidence 9999997543 24799999999986 7899999999999653
No 181
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.46 E-value=2.3e-13 Score=126.61 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=77.1
Q ss_pred ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--c----EEeeeecCCCCCCcccc
Q 004872 183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--E----LTRRTDARPGSDPRWDS 256 (726)
Q Consensus 183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--~----~~rTt~i~~t~nP~WnE 256 (726)
+..+.|.|+|++|+||+..+..|.+ ||||+|++. . ..+|++++++.||+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~----------------------Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e 69 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLA----------------------DPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNE 69 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCC----------------------CeEEEEEEEcCCceeeeEcCccccCCCCCccCc
Confidence 4568999999999999998877755 999999983 1 35677889999999999
Q ss_pred eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEecee
Q 004872 257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 295 (726)
Q Consensus 257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~ 295 (726)
+|.|.+... ...|.|+|||+|.. .++++||++.+++..
T Consensus 70 ~F~f~v~~~~~~~~~l~~~v~d~d~~-~~~~~iG~~~~~~~~ 110 (136)
T cd08404 70 SFVFDIPSEELEDISVEFLVLDSDRV-TKNEVIGRLVLGPKA 110 (136)
T ss_pred eEEEECCHHHhCCCEEEEEEEECCCC-CCCccEEEEEECCcC
Confidence 999998643 45799999999986 789999999999987
No 182
>PLN03008 Phospholipase D delta
Probab=99.46 E-value=3.7e-13 Score=152.53 Aligned_cols=99 Identities=21% Similarity=0.444 Sum_probs=89.3
Q ss_pred CCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEEEEEEccccccCCeeeeee
Q 004872 398 GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWV 475 (726)
Q Consensus 398 g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~ 475 (726)
+.+||||+|.++++ +.||+++ ++.||+|||+|.|.+.++...|.|+|+|++.+++++||++.++++++..+...+.|+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl 154 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWF 154 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEE
Confidence 46799999999765 6799999 999999999999999888889999999999998899999999999999998889999
Q ss_pred ecccc------ccceeEEEEEEEEecC
Q 004872 476 PLEKV------NTGELRLQIEATRVDD 496 (726)
Q Consensus 476 ~L~~~------~~G~I~l~~~~~~~~~ 496 (726)
+|.+. ..|+|+++++|.++..
T Consensus 155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 155 PVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred EccccCCCCCCCCcEEEEEEEEEEccc
Confidence 99763 3589999999999754
No 183
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.46 E-value=2.2e-13 Score=126.74 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=77.5
Q ss_pred ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCcccc
Q 004872 183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDS 256 (726)
Q Consensus 183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnE 256 (726)
+..|.|.|+|++|+||+..+..|.+ ||||+|++. ...+|++++++.||+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~----------------------dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne 69 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTS----------------------DPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNE 69 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCC----------------------CceEEEEEEeCCCccccccCcceeCCCCCcccc
Confidence 4569999999999999988876654 999999982 235788899999999999
Q ss_pred eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEeceec
Q 004872 257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV 296 (726)
Q Consensus 257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l 296 (726)
+|.|.+... ...|.|+|||.|.. +++++||.+.+++.+.
T Consensus 70 ~F~f~i~~~~~~~~~l~~~v~d~~~~-~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 70 SFIFNIPLERLRETTLIITVMDKDRL-SRNDLIGKIYLGWKSG 111 (136)
T ss_pred eEEEeCCHHHhCCCEEEEEEEECCCC-CCCcEeEEEEECCccC
Confidence 999987532 45899999999986 7899999999999875
No 184
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.46 E-value=3.1e-13 Score=125.44 Aligned_cols=88 Identities=19% Similarity=0.342 Sum_probs=74.0
Q ss_pred ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--c----cEEeeeecCCCCCCcccc
Q 004872 183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--E----ELTRRTDARPGSDPRWDS 256 (726)
Q Consensus 183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g----~~~rTt~i~~t~nP~WnE 256 (726)
+..|.|.|+|++|++|+..+..|.+ ||||+|++ + ...+|++++++.||+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE 68 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGS----------------------DPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNE 68 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCC----------------------CeEEEEEEEcCCcccceEcCccccCCCCCccce
Confidence 4559999999999999998877654 99999998 2 235777889999999999
Q ss_pred eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEec
Q 004872 257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKM 293 (726)
Q Consensus 257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L 293 (726)
+|.|.+... ...|.|+|||+|.. .++++||.+.+..
T Consensus 69 ~F~f~i~~~~l~~~~l~~~V~d~d~~-~~~~~iG~~~l~~ 107 (135)
T cd08410 69 SFSFKVPQEELENVSLVFTVYGHNVK-SSNDFIGRIVIGQ 107 (135)
T ss_pred eEEEeCCHHHhCCCEEEEEEEeCCCC-CCCcEEEEEEEcC
Confidence 999998543 34799999999986 7899999998665
No 185
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.46 E-value=3.6e-13 Score=120.40 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=75.3
Q ss_pred EEEEEEeecCcccccCCCCccEEEEEECCe------EEEeEeeeCCCCCeeeeEEEEecC-------CCeEEEEEEECCC
Q 004872 513 ELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNA 579 (726)
Q Consensus 513 ~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~------~~kT~v~~~t~nP~wne~~~f~v~-------~~~l~i~V~d~d~ 579 (726)
.+..++|++|+..+..|.+||||++++.+. .++|+++++++||+|| +|.|+.. ...|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998542 5899999999999999 6888752 5789999999999
Q ss_pred CCCCCeeEEEEEEccccCCC
Q 004872 580 LLASSSIGDCVVEYQRLPPN 599 (726)
Q Consensus 580 ~~~d~~lG~~~i~l~~l~~~ 599 (726)
+++|++||++.++++++..+
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 99999999999999999744
No 186
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.46 E-value=1.6e-13 Score=169.35 Aligned_cols=114 Identities=18% Similarity=0.358 Sum_probs=101.1
Q ss_pred CCCceEEEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCCC
Q 004872 506 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNAL 580 (726)
Q Consensus 506 ~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~d~d~~ 580 (726)
..-.|.|+|+|++|+||. +..|.+||||++.++++ ++||++++++.||+|||.|.|.+. +..|+|+|||+|.+
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 345699999999999998 45789999999999965 889999999999999999997663 35799999999999
Q ss_pred CCCCeeEEEEEEccccCCCCceeeEEecCC--CCCeE---EEEEEEE
Q 004872 581 LASSSIGDCVVEYQRLPPNQMADKWIPLQG--VRKGE---IHVLITR 622 (726)
Q Consensus 581 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~---i~l~l~~ 622 (726)
++| .||++.+++.++..+.....||+|.+ .+.|. |++.+.|
T Consensus 2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200 2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQW 2099 (2102)
T ss_pred CCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEe
Confidence 655 99999999999998989999999985 56798 9999887
No 187
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.44 E-value=1.6e-12 Score=118.79 Aligned_cols=98 Identities=26% Similarity=0.417 Sum_probs=83.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC----ceeEEEEEEeec
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEE 448 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~ 448 (726)
+.|.|+|++|++|+..+..+.+||||++++. ...++|+++ ++.||.||+.|.|..... ...+.|+|||++
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~ 94 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDED 94 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcC
Confidence 3799999999999988888999999999982 247899999 999999999999964332 468999999998
Q ss_pred CCCCcceEEEEEEccccccCCeeeeeee
Q 004872 449 IFGDENMGSARVNLEGLVEGSVRDIWVP 476 (726)
Q Consensus 449 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~ 476 (726)
..++++||++.++++++..+.....|+.
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 95 RFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 7778899999999999987766555554
No 188
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.44 E-value=4e-13 Score=124.64 Aligned_cols=89 Identities=12% Similarity=0.238 Sum_probs=75.5
Q ss_pred ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCcccc
Q 004872 183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDS 256 (726)
Q Consensus 183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnE 256 (726)
+..|.|+|+|++|++|+..+..|.+ ||||+|++. ...+|++++++.||+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~----------------------dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne 68 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFS----------------------DPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNE 68 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCC----------------------CceEEEEEEeCCcccceecCCcccCCCCCcccc
Confidence 4569999999999999999877655 999999983 235677788999999999
Q ss_pred eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEece
Q 004872 257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMK 294 (726)
Q Consensus 257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~ 294 (726)
+|.|.+... ...|.|+|||+|.. +++++||++.+++.
T Consensus 69 ~f~f~i~~~~~~~~~l~~~v~d~~~~-~~~~~IG~~~l~~~ 108 (134)
T cd08403 69 ALVFDVPPENVDNVSLIIAVVDYDRV-GHNELIGVCRVGPN 108 (134)
T ss_pred eEEEECCHHHhCCCEEEEEEEECCCC-CCCceeEEEEECCC
Confidence 999987543 34699999999986 78999999999876
No 189
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.43 E-value=5.2e-13 Score=123.86 Aligned_cols=100 Identities=22% Similarity=0.410 Sum_probs=87.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF 450 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~ 450 (726)
.|.|+|++|+||+..+..+.+||||++++.. ..++|+++ ++.||.|||+|.|.+... ...|.|+|||.+..
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~ 94 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV 94 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC
Confidence 7999999999999988889999999999932 36799999 999999999999997664 57899999999986
Q ss_pred -CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872 451 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN 481 (726)
Q Consensus 451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~ 481 (726)
++++||.+.+++++ .+.....|++|....
T Consensus 95 ~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 95 GRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred CCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 88999999999999 455678999998754
No 190
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.43 E-value=1.4e-12 Score=119.38 Aligned_cols=108 Identities=25% Similarity=0.405 Sum_probs=88.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 456 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG 456 (726)
.|.|+|.+|+ |...+..+.+||||+++++++ .++|+++ ++.||.|||.|.|.+. ....|.|+|||++.. .+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 6999999998 555555788999999999766 8999999 9999999999999964 456899999999988 889999
Q ss_pred EEEEEccccccCCe-----eeeeeeccccc------cceeEEEE
Q 004872 457 SARVNLEGLVEGSV-----RDIWVPLEKVN------TGELRLQI 489 (726)
Q Consensus 457 ~~~i~L~~l~~~~~-----~~~w~~L~~~~------~G~I~l~~ 489 (726)
++.++|.++..... ...|+++...+ .|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999885432 23578885432 46666654
No 191
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.42 E-value=7.6e-13 Score=123.03 Aligned_cols=99 Identities=14% Similarity=0.234 Sum_probs=82.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF 450 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~ 450 (726)
.|.|+|++|+||...+ .+.+||||++++ +. ..+||+++ ++.||.|||.|.|.+... ...|.|+||+.+..
T Consensus 16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence 7999999999999888 788999999998 22 36789999 999999999999997542 56899999999977
Q ss_pred -CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872 451 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 479 (726)
Q Consensus 451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 479 (726)
++++||++.+.......+....+|..+..
T Consensus 95 ~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 95 RKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 89999999999766555555566766654
No 192
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.39 E-value=2e-12 Score=115.59 Aligned_cols=85 Identities=20% Similarity=0.366 Sum_probs=71.2
Q ss_pred EEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-c------EEeeeecCCCCCCcccceeEEEEe
Q 004872 191 RVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-E------LTRRTDARPGSDPRWDSMFNMVLH 263 (726)
Q Consensus 191 ~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~------~~rTt~i~~t~nP~WnEtf~~~v~ 263 (726)
-.++|++|+..+..|.+ ||||+|++. + ..+|+++++++||+|| +|.|.+.
T Consensus 5 ~~i~a~~L~~~d~~~~~----------------------DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~ 61 (110)
T cd04047 5 LQFSGKKLDKKDFFGKS----------------------DPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ 61 (110)
T ss_pred EEEEeCCCCCCCCCCCC----------------------CeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH
Confidence 34589999999877755 999999984 2 4788999999999999 7888754
Q ss_pred cC-----CceEEEEEEEeCCCCCCcceeEEEEEeceeccCC
Q 004872 264 EE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 299 (726)
Q Consensus 264 ~~-----~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~ 299 (726)
+. .+.|.|+|||+|.. +++++||++.+++++|...
T Consensus 62 ~l~~~~~~~~l~~~V~d~d~~-~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 62 KLCNGDYDRPIKIEVYDYDSS-GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred HhcCCCcCCEEEEEEEEeCCC-CCCcEEEEEEEEHHHHhcC
Confidence 32 57999999999986 7899999999999998843
No 193
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.38 E-value=2.4e-12 Score=117.01 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=83.0
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe-------Eeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecC----C
Q 004872 384 TVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEI----F 450 (726)
Q Consensus 384 ~V~~a~~L~~~d~~g~~dpyv~v~lg~~-------~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~----~ 450 (726)
..++|++|+..+..|.+||||++++... .++|+++ ++.||.|||+|.|.+.. ....|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 4478999999998999999999999432 5999999 99999999999998543 46689999999996 5
Q ss_pred -CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872 451 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 479 (726)
Q Consensus 451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 479 (726)
++++||++.+++.++..+.....|++|..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 89999999999999998777778999843
No 194
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.38 E-value=1.9e-12 Score=117.85 Aligned_cols=98 Identities=15% Similarity=0.297 Sum_probs=78.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--eEeecccc-CCC-CCceeeEEEEEeeCC--ceeEEEEEEeecC
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSP-NHVWNQKFELDEIGG--GECLMVKCYNEEI 449 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~--~~~kT~~~-~t~-nP~wne~f~f~v~~~--~~~l~i~V~d~~~ 449 (726)
+.|+|+|++|+||+.++..+.+||||+|++ ++ .++||+++ ++. ||.|||+|.|.+... ...+.|+|||++.
T Consensus 14 ~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~ 93 (135)
T cd08692 14 SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS 93 (135)
T ss_pred CeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC
Confidence 489999999999998766677899999998 22 37889999 884 699999999998764 5578899999988
Q ss_pred C-CCcceEEEEEEccccccCCeeeeeeec
Q 004872 450 F-GDENMGSARVNLEGLVEGSVRDIWVPL 477 (726)
Q Consensus 450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L 477 (726)
. ++++||++.+..+... +...++|..+
T Consensus 94 ~~~n~~IG~v~lG~~~~~-~~~~~hW~~m 121 (135)
T cd08692 94 VRRKHFLGQVWISSDSSS-SEAVEQWKDT 121 (135)
T ss_pred CcCCceEEEEEECCccCC-chhhhhHHHH
Confidence 7 8999999999997642 2234466544
No 195
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.8e-13 Score=136.06 Aligned_cols=208 Identities=18% Similarity=0.284 Sum_probs=153.3
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCccccee-
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDSMF- 258 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnEtf- 258 (726)
-.+..+|..|++|+.++..|.- |||++..+. +..||++..+++||.|||+-
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~----------------------d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev 150 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLA----------------------DPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEV 150 (362)
T ss_pred hhcceeechhcccchhhhhhhc----------------------chHHhhhcccchhhhhhhhHHhhccCcCcceeccce
Confidence 5789999999999999987754 999999995 23567788999999999765
Q ss_pred -EEEEecC--CceEEEEEEEeCCCCCCcceeEEEEEeceeccCCCcceeecCCCCccccccccccCceeeeeeecC----
Q 004872 259 -NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE---- 331 (726)
Q Consensus 259 -~~~v~~~--~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---- 331 (726)
.++..+. ...+++.|.|.+.. ...+++|+..++++.|..... +.+..|= +..++.+
T Consensus 151 ~~~i~~~~~~~K~~Rk~vcdn~~~-~~~~sqGq~r~~lkKl~p~q~-------------k~f~~cl---~~~lp~~rad~ 213 (362)
T KOG1013|consen 151 YEGITDDDTHLKVLRKVVCDNDKK-THNESQGQSRVSLKKLKPLQR-------------KSFNICL---EKSLPSERADR 213 (362)
T ss_pred ecccccchhhhhhhheeeccCccc-ccccCcccchhhhhccChhhc-------------chhhhhh---hccCCcccccc
Confidence 4555554 56899999999986 778999999999988874321 1111000 0001100
Q ss_pred --CccccEEEEEEEeeeeecCCCCCCCCCccCCCCcccccCCccccCCccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC
Q 004872 332 --GVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG 409 (726)
Q Consensus 332 --~~~~G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg 409 (726)
..++|++.+++. +.+.+. .+.|++.+|..|..+|.+|.+|||++.++.
T Consensus 214 ~~~E~rg~i~isl~-----------------------------~~s~~~-~l~vt~iRc~~l~ssDsng~sDpyvS~~l~ 263 (362)
T KOG1013|consen 214 DEDEERGAILISLA-----------------------------YSSTTP-GLIVTIIRCSHLASSDSNGYSDPYVSQRLS 263 (362)
T ss_pred cchhhccceeeeec-----------------------------cCcCCC-ceEEEEEEeeeeeccccCCCCCccceeecC
Confidence 113444443321 111122 599999999999999999999999999992
Q ss_pred -----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-CCcceEEEEEEc
Q 004872 410 -----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNL 462 (726)
Q Consensus 410 -----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~iG~~~i~L 462 (726)
.-+++|.+. ++.||.|++.|.|.+... ...+.|.|||.+.. ..+.+|-+...+
T Consensus 264 pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 264 PDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred CCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence 236788888 999999999999997664 56899999999988 788888765543
No 196
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.34 E-value=5.1e-12 Score=106.79 Aligned_cols=79 Identities=35% Similarity=0.572 Sum_probs=72.6
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 585 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~ 585 (726)
|+|+|++|+||+..+..+..||||++.+++ ..++|+++.++.+|.|||+|.|++. ...|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988889999999999977 6799999999999999999999963 4669999999999999999
Q ss_pred eEEEE
Q 004872 586 IGDCV 590 (726)
Q Consensus 586 lG~~~ 590 (726)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 197
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.3e-12 Score=138.02 Aligned_cols=174 Identities=24% Similarity=0.362 Sum_probs=124.2
Q ss_pred CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC-----
Q 004872 508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL----- 580 (726)
Q Consensus 508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~----- 580 (726)
-...++++|++|++|.+.|..|++||||.+.++..+.+|+++...+||+|||.|.|..+ .+.|.+.|||.|..
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHH
Confidence 34778999999999999999999999999999999999999999999999999999986 46799999998863
Q ss_pred ------CCCCeeEEEEEEccccCCCCceeeEEecCC-----CCCeEEEEEEEEEecCccccccCCCCCCcceeeeccchh
Q 004872 581 ------LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQM 649 (726)
Q Consensus 581 ------~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~~~p~~~~~~~~~~~~p~~k~~~~~~~~ 649 (726)
..|+|+|+..|.+..+.. ..+.||+|+. ...|.|++.++..+-..++. .|| |+-....
T Consensus 373 rqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisveikgeekv------apy---hvqytcl 441 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKV------APY---HVQYTCL 441 (1283)
T ss_pred HHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEEcCcccc------ccc---eeeehhH
Confidence 258999999999998865 4689999974 34698888887744333222 111 0000011
Q ss_pred hHhhhhhhccccCCCch----hhhhhcccCccchhhHHHHHHHHHHH
Q 004872 650 KQMMVKFQSLIDDDNLE----ELSTALSELETLEDSQEEYMVQLETE 692 (726)
Q Consensus 650 r~~l~k~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (726)
.+-+=...+....-.+| --.|.+-|.+..+.+.|+..++--+|
T Consensus 442 henlfh~~~~~~~vkip~argddawkv~fdetaqeivdefamrygie 488 (1283)
T KOG1011|consen 442 HENLFHAHTDDGEVKIPKARGDDAWKVYFDETAQEIVDEFAMRYGIE 488 (1283)
T ss_pred hhhhHHhhhcccceeCCccCCCccceehhhhhHHHHHHHHHHHHhHH
Confidence 11111111111111111 13477778888888888887754444
No 198
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.34 E-value=3e-12 Score=158.24 Aligned_cols=113 Identities=20% Similarity=0.408 Sum_probs=101.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCCCCc
Q 004872 378 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIFGDE 453 (726)
Q Consensus 378 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~~d~ 453 (726)
-|.|.|+|++|+||. +..|.+||||++.+|++ +.||+++ ++.||+|||.|.|.+.++ ...++|+|||+|.++++
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd 2056 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS 2056 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC
Confidence 359999999999998 44789999999999865 8899999 999999999999887775 47899999999998777
Q ss_pred ceEEEEEEccccccCCeeeeeeeccc--cccce---eEEEEEEE
Q 004872 454 NMGSARVNLEGLVEGSVRDIWVPLEK--VNTGE---LRLQIEAT 492 (726)
Q Consensus 454 ~iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~---I~l~~~~~ 492 (726)
.+|.+.+++.++..+.....||+|.+ .+.|+ |.+.+.|.
T Consensus 2057 ~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2057 SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 99999999999999999999999997 45798 99999886
No 199
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.33 E-value=2.1e-11 Score=112.09 Aligned_cols=109 Identities=27% Similarity=0.442 Sum_probs=89.7
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEeecccc-CCC-CCceeeEEEEEeeCC-ceeEEEEEEeec
Q 004872 380 KINVTVVEGKDLMPKD--KSGKCDPYVKLQY------GKIVQRTRTA-HSP-NHVWNQKFELDEIGG-GECLMVKCYNEE 448 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d--~~g~~dpyv~v~l------g~~~~kT~~~-~t~-nP~wne~f~f~v~~~-~~~l~i~V~d~~ 448 (726)
.|+|+|++|+||+..+ ..+..||||++++ +...++|+++ ++. ||.|||+|.|.+..+ ...|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6999999999998877 5788999999999 2457899998 665 999999999998765 467999999998
Q ss_pred CCCCcceEEEEEEccccccCCeeeeeeecccc-----ccceeEEEEEE
Q 004872 449 IFGDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA 491 (726)
Q Consensus 449 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~~~~ 491 (726)
..++++||++.++++++..+ ..|++|.+. ..|.|.+.++.
T Consensus 83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 77889999999999999544 367888652 24677777653
No 200
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.29 E-value=1.2e-11 Score=104.46 Aligned_cols=80 Identities=18% Similarity=0.358 Sum_probs=68.1
Q ss_pred EEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc----EEeeeecCCCCCCcccceeEEEEe
Q 004872 188 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE----LTRRTDARPGSDPRWDSMFNMVLH 263 (726)
Q Consensus 188 L~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~----~~rTt~i~~t~nP~WnEtf~~~v~ 263 (726)
|+|+|++|+||+..+..+.+ ||||++.++. ..+|++++++.+|.|||+|.|.+.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~----------------------~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~ 58 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKP----------------------DPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLD 58 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSB----------------------EEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEES
T ss_pred CEEEEEEEECCCCcccCCcc----------------------cccceeecceeeeeeeeeeeeeccccceeeeeeeeeee
Confidence 78999999999987755443 9999999952 378888999999999999999976
Q ss_pred cC-CceEEEEEEEeCCCCCCcceeEEEE
Q 004872 264 EE-TGTVRFNLYECIPGHVKYDYLTSCE 290 (726)
Q Consensus 264 ~~-~~~L~~~V~D~d~~~~~dd~lG~~~ 290 (726)
.. .+.|.|+|||.+.. .++++||+|.
T Consensus 59 ~~~~~~l~~~V~~~~~~-~~~~~iG~~~ 85 (85)
T PF00168_consen 59 DPDLDSLSFEVWDKDSF-GKDELIGEVK 85 (85)
T ss_dssp HGCGTEEEEEEEEETSS-SSEEEEEEEE
T ss_pred cccccceEEEEEECCCC-CCCCEEEEEC
Confidence 55 56699999999986 6799999984
No 201
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.29 E-value=1.5e-11 Score=111.97 Aligned_cols=91 Identities=26% Similarity=0.434 Sum_probs=78.0
Q ss_pred EEEEEEEEeecCcccc--cCC--CCccEEEEEECC---eEEEeEeeeCCCC--CeeeeEEEEecC---------------
Q 004872 511 WIELVIVEARDLVAAD--LRG--TSDPYVKVQYGD---LKKRTKVIFKTLN--PQWHQTLEFPDD--------------- 566 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d--~~g--~~DPyv~v~~~~---~~~kT~v~~~t~n--P~wne~~~f~v~--------------- 566 (726)
.|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.++++++| |.||++|.|++.
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3899999999976543 356 499999999965 5789999999999 999999998862
Q ss_pred -----------CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCc
Q 004872 567 -----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM 601 (726)
Q Consensus 567 -----------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~ 601 (726)
...|.++|||+|.+++|++||++.++|..+..+..
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 36799999999999999999999999998876543
No 202
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.24 E-value=5.6e-11 Score=103.01 Aligned_cols=97 Identities=39% Similarity=0.703 Sum_probs=87.6
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 587 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG 587 (726)
|.|.|++|++|......+..||||++.+.+ ...+|++..++.||.|||.|.|++. ...+.|+|||++..+.+++||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 478999999998877778899999999988 8899999999999999999999985 488999999999988889999
Q ss_pred EEEEEccccC-CCCceeeEEec
Q 004872 588 DCVVEYQRLP-PNQMADKWIPL 608 (726)
Q Consensus 588 ~~~i~l~~l~-~~~~~~~w~~L 608 (726)
.+.+++..+. .......|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999998 67777888875
No 203
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.5e-11 Score=131.94 Aligned_cols=110 Identities=37% Similarity=0.634 Sum_probs=97.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-------
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF------- 450 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~------- 450 (726)
..+.++|..|.+|..+|..|++||||.+.+|+.+.||+++ ..+||+|||.|.|.+.+..+.|.+.|||+|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHH
Confidence 3799999999999999999999999999999999999999 99999999999999999999999999998741
Q ss_pred -----CCcceEEEEEEccccccCCeeeeeeecccc-----ccceeEEEEE
Q 004872 451 -----GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIE 490 (726)
Q Consensus 451 -----~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~~~ 490 (726)
+|+|+|+..|.+..+. +..+.||+|+.+ -+|.|++.+.
T Consensus 375 kl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred HhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEE
Confidence 6899999999998873 456799999864 2577766554
No 204
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.16 E-value=2.6e-10 Score=99.08 Aligned_cols=92 Identities=35% Similarity=0.525 Sum_probs=81.4
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECCe---EEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 585 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~ 585 (726)
+.+.|++|++|......+..+|||++.+.+. ..+|+++.++.||.|||+|.|++. ...|.|+|||++..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6899999999998876678999999999764 799999999999999999999984 5889999999998888999
Q ss_pred eEEEEEEccccCCCCcee
Q 004872 586 IGDCVVEYQRLPPNQMAD 603 (726)
Q Consensus 586 lG~~~i~l~~l~~~~~~~ 603 (726)
+|.+.+++.++..+....
T Consensus 82 ~G~~~~~l~~~~~~~~~~ 99 (101)
T smart00239 82 IGQVTIPLSDLLLGGRHE 99 (101)
T ss_pred eEEEEEEHHHcccCcccc
Confidence 999999999987765443
No 205
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.12 E-value=2.4e-10 Score=129.28 Aligned_cols=249 Identities=23% Similarity=0.329 Sum_probs=169.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--eecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcc
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV--QRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN 454 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~--~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~ 454 (726)
.++|.+++|-+|.+.|.+|.+|||+++.+|+.. -++..+ +++||+|++.|++.+..+ ...+.+.|||+|.. +|+.
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~ 693 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEK 693 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccch
Confidence 578999999999999999999999999998876 555667 999999999999987766 77899999999998 7999
Q ss_pred eEEEEEEccccccC-----Cee---------eeeeecccc--------c---------cceeEEEEEEEEecCC------
Q 004872 455 MGSARVNLEGLVEG-----SVR---------DIWVPLEKV--------N---------TGELRLQIEATRVDDN------ 497 (726)
Q Consensus 455 iG~~~i~L~~l~~~-----~~~---------~~w~~L~~~--------~---------~G~I~l~~~~~~~~~~------ 497 (726)
||+..++|+.-... ... ..|..-... . .++. ..+.|....+.
T Consensus 694 iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~~ 772 (1105)
T KOG1326|consen 694 IGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKEA 772 (1105)
T ss_pred hhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhccccc
Confidence 99999998763211 011 223221110 0 0111 12222210000
Q ss_pred ----------------------------------------C---------------------CCCCCCCCCCceEEEEEE
Q 004872 498 ----------------------------------------E---------------------GSRGQNIGSGNGWIELVI 516 (726)
Q Consensus 498 ----------------------------------------~---------------------~~~~~~~~~~~g~L~v~v 516 (726)
+ +.......+...-++|.+
T Consensus 773 k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrvii 852 (1105)
T KOG1326|consen 773 KTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVII 852 (1105)
T ss_pred CCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEE
Confidence 0 000112344567889988
Q ss_pred EEeecCcccccC----CCCccEEEEEECC---eEEEeEeeeCCC----CCeeeeEEEEec--------------------
Q 004872 517 VEARDLVAADLR----GTSDPYVKVQYGD---LKKRTKVIFKTL----NPQWHQTLEFPD-------------------- 565 (726)
Q Consensus 517 ~~a~~L~~~d~~----g~~DPyv~v~~~~---~~~kT~v~~~t~----nP~wne~~~f~v-------------------- 565 (726)
..-.+....|.+ ..+|-||+-.+.+ .+.+|.++++++ |-.|.-.|-|..
T Consensus 853 Wnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~de 932 (1105)
T KOG1326|consen 853 WNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDE 932 (1105)
T ss_pred eeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhcccccc
Confidence 888777665543 3579999988743 477898888754 334443333331
Q ss_pred ----CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCC----------------------CceeeEEecCCC------CC
Q 004872 566 ----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN----------------------QMADKWIPLQGV------RK 613 (726)
Q Consensus 566 ----~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~----------------------~~~~~w~~L~~~------~~ 613 (726)
....|.|+|||.|.|++|+|||..+++|++...+ .....|.|+... -.
T Consensus 933 te~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~ 1012 (1105)
T KOG1326|consen 933 TEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLA 1012 (1105)
T ss_pred ccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceec
Confidence 0356999999999999999999999999865322 234578888532 14
Q ss_pred eEEEEEEEEEecCcccc
Q 004872 614 GEIHVLITRKVPELDKR 630 (726)
Q Consensus 614 G~i~l~l~~~~p~~~~~ 630 (726)
|.+.+++++ +.+.++.
T Consensus 1013 Gkvem~lei-lt~~EA~ 1028 (1105)
T KOG1326|consen 1013 GKVEMSLEI-LTEKEAD 1028 (1105)
T ss_pred ceeeeehhh-hhhhhhh
Confidence 989888887 5554443
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.06 E-value=9.5e-10 Score=95.17 Aligned_cols=97 Identities=34% Similarity=0.703 Sum_probs=85.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC-CCcceE
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG 456 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~~iG 456 (726)
|.|.|++|++|......+..+|||.+.+.. ..++|+++ ++.||.|++.|.|.+.. ....+.|+||+.+.. .+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998766677899999999976 89999999 99999999999999877 577899999999887 689999
Q ss_pred EEEEEccccc-cCCeeeeeeec
Q 004872 457 SARVNLEGLV-EGSVRDIWVPL 477 (726)
Q Consensus 457 ~~~i~L~~l~-~~~~~~~w~~L 477 (726)
.+.+++.++. .......|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999998 55566788765
No 207
>PLN02223 phosphoinositide phospholipase C
Probab=99.04 E-value=2.1e-09 Score=117.89 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=81.8
Q ss_pred ceEEEEEEEEeecCccc-----ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecCC---CeEEEEEE
Q 004872 509 NGWIELVIVEARDLVAA-----DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVR 575 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~-----d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V~ 575 (726)
...|.|+|+.|++++.. +.....||||+|.+.+ .+++|.+..++.||+|||+|.|++.. ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 47899999999987511 2234679999999954 35678888889999999999999843 45899999
Q ss_pred ECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872 576 DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 610 (726)
Q Consensus 576 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 610 (726)
|+|..++|+|+|++.+|+..+..|. ++++|.+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~ 519 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYD 519 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEeccC
Confidence 9999889999999999999999886 6677754
No 208
>PLN02270 phospholipase D alpha
Probab=99.02 E-value=2.5e-09 Score=121.99 Aligned_cols=116 Identities=22% Similarity=0.386 Sum_probs=98.2
Q ss_pred ceEEEEEEEEeecCcccc------------------cCCCCccEEEEEECCeE-EEeEeeeC-CCCCeeeeEEEEecC--
Q 004872 509 NGWIELVIVEARDLVAAD------------------LRGTSDPYVKVQYGDLK-KRTKVIFK-TLNPQWHQTLEFPDD-- 566 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d------------------~~g~~DPyv~v~~~~~~-~kT~v~~~-t~nP~wne~~~f~v~-- 566 (726)
.|.|.++|++|++|++.+ ..+++||||.|.+++.+ .||+++.+ ..||.|||+|.+++.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 589999999999998631 23678999999998864 59999988 469999999999984
Q ss_pred CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC---C---CeEEEEEEEEEecC
Q 004872 567 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV---R---KGEIHVLITRKVPE 626 (726)
Q Consensus 567 ~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~---~---~G~i~l~l~~~~p~ 626 (726)
...+.|.|.|.|.++. .+||.+.||..++..+...++|+++.+. + .-.|+++++| .|.
T Consensus 87 ~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f-~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQY-FEV 150 (808)
T ss_pred cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEE-EEc
Confidence 5789999999998874 5999999999999999999999999642 1 2489999999 554
No 209
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.00 E-value=2.4e-09 Score=92.89 Aligned_cols=90 Identities=30% Similarity=0.563 Sum_probs=79.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcc
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN 454 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~---~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~ 454 (726)
+.|.|++|++|......+..+|||++++.. ..++|+++ ++.||.||+.|.|.+... ...|.|+||+.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 789999999998876657899999999965 48999999 888999999999998776 88999999999877 6899
Q ss_pred eEEEEEEccccccCCe
Q 004872 455 MGSARVNLEGLVEGSV 470 (726)
Q Consensus 455 iG~~~i~L~~l~~~~~ 470 (726)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999876543
No 210
>PLN02270 phospholipase D alpha
Probab=98.99 E-value=2.9e-09 Score=121.39 Aligned_cols=119 Identities=18% Similarity=0.336 Sum_probs=102.8
Q ss_pred ccEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEC-CeEeecccc-C-CCCCceeeEEEEEeeCC
Q 004872 378 GRKINVTVVEGKDLMPKD------------------KSGKCDPYVKLQYG-KIVQRTRTA-H-SPNHVWNQKFELDEIGG 436 (726)
Q Consensus 378 ~~~L~V~V~~a~~L~~~d------------------~~g~~dpyv~v~lg-~~~~kT~~~-~-t~nP~wne~f~f~v~~~ 436 (726)
.|.|.++|.+|++|+.++ ..+.+||||.|.++ ..+.||+++ + ..||.|+|+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 358999999999998631 12568999999995 568899999 6 46999999999999999
Q ss_pred ceeEEEEEEeecCCCCcceEEEEEEccccccCCeeeeeeeccccc------cceeEEEEEEEEecC
Q 004872 437 GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATRVDD 496 (726)
Q Consensus 437 ~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~------~G~I~l~~~~~~~~~ 496 (726)
...+.|.|.|.+.++..+||.+.++..++..+...+.||++.+.. ..+|+++++|.++..
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 899999999999988889999999999999998899999997642 358999999998654
No 211
>PLN02952 phosphoinositide phospholipase C
Probab=98.96 E-value=6.4e-09 Score=116.66 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=87.0
Q ss_pred ceEEEEEEEEeecCccc------ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecCC---CeEEEEE
Q 004872 509 NGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHV 574 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V 574 (726)
...|.|.|+.|++++.. +.....||||+|.+-+ .+.+|+++.++.||+|||+|.|++.. ..+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 1223459999999943 56799999999999999999998742 5589999
Q ss_pred EECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC---CCCeEEEEEEE
Q 004872 575 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG---VRKGEIHVLIT 621 (726)
Q Consensus 575 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~---~~~G~i~l~l~ 621 (726)
+|+|..+.++++|++.+|+..+..|. +|++|.+ ...+...+-+.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~ 595 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMR 595 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEE
Confidence 99999999999999999999999886 6999963 33344444433
No 212
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.93 E-value=5.2e-10 Score=122.03 Aligned_cols=103 Identities=27% Similarity=0.437 Sum_probs=91.8
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCe-------EEEeEeeeCCCC
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLN 554 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~n 554 (726)
.|.+.+++.|. .....|.|.|+-|+++.+.|.+|.+||||.|.++.. ..+|+|+.+|+|
T Consensus 933 fg~lsvr~~y~--------------~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLn 998 (1103)
T KOG1328|consen 933 FGVLSVRAYYN--------------GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLN 998 (1103)
T ss_pred CCceEEEEEee--------------ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcccc
Confidence 48888888776 456789999999999999999999999999999764 459999999999
Q ss_pred CeeeeEEEEecC-------CCeEEEEEEECCCCCCCCeeEEEEEEccccCC
Q 004872 555 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP 598 (726)
Q Consensus 555 P~wne~~~f~v~-------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 598 (726)
|+|+|+|+|.|+ ...+.|+|||||-++.+||-|++.+.|.++..
T Consensus 999 PVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 999 PVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred chhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 999999999984 46799999999999999999999999988853
No 213
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.88 E-value=1.3e-08 Score=114.00 Aligned_cols=112 Identities=15% Similarity=0.251 Sum_probs=87.3
Q ss_pred CceEEEEEEEEeecCccc------ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEE
Q 004872 508 GNGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLH 573 (726)
Q Consensus 508 ~~g~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~ 573 (726)
....|.|.|+.|++++.. +.....||||+|.+-+ .+.+|++..++.||+|||+|.|++. -..|+|+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 346799999999987421 2234579999999943 3578999999999999999999974 3678999
Q ss_pred EEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE
Q 004872 574 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR 622 (726)
Q Consensus 574 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~ 622 (726)
|+|+|..++|+|+|++.+|+..|..|. +.++|.+.. .-.|.+.+.+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999999889999999999999999886 456775422 2355555544
No 214
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.88 E-value=1.9e-08 Score=109.51 Aligned_cols=173 Identities=23% Similarity=0.294 Sum_probs=131.0
Q ss_pred eEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC-----CCcceEEEEEEccccccCCeeeeeeecc---cc
Q 004872 411 IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-----GDENMGSARVNLEGLVEGSVRDIWVPLE---KV 480 (726)
Q Consensus 411 ~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-----~d~~iG~~~i~L~~l~~~~~~~~w~~L~---~~ 480 (726)
+..+|.++ +..||.|.+.|.....- ..+.+++.+++-+.. ..+++|++...+.++........-+.++ ..
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~ 120 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNA 120 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccC
Confidence 35688899 99999999988776544 467899999987654 5789999999999998655433333333 23
Q ss_pred ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC--C----eEEEeEeeeCCCC
Q 004872 481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D----LKKRTKVIFKTLN 554 (726)
Q Consensus 481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~----~~~kT~v~~~t~n 554 (726)
..|.|.+.++-. ...........+|++|..+|..+++|||..++-- . ..++|.+++++++
T Consensus 121 ~~g~iti~aee~--------------~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~ 186 (529)
T KOG1327|consen 121 GSGTITISAEED--------------ESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLN 186 (529)
T ss_pred CcccEEEEeecc--------------cccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCC
Confidence 578888888633 1122334455669999999999999999998862 2 3569999999999
Q ss_pred CeeeeEEE-E-----ecCCCeEEEEEEECCCCCCCCeeEEEEEEccccC
Q 004872 555 PQWHQTLE-F-----PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP 597 (726)
Q Consensus 555 P~wne~~~-f-----~v~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~ 597 (726)
|.|.+... + ...+..+.+++||++..+++++||++..++..+.
T Consensus 187 p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 187 PQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 99987221 1 1236889999999999999999999998888775
No 215
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.87 E-value=1.3e-08 Score=92.89 Aligned_cols=89 Identities=25% Similarity=0.306 Sum_probs=74.8
Q ss_pred EEEEEEEeecCCCCC--CCCC--CCcEEEEEE-C--CeEeecccc-CCCC--CceeeEEEEEeeC---------------
Q 004872 381 INVTVVEGKDLMPKD--KSGK--CDPYVKLQY-G--KIVQRTRTA-HSPN--HVWNQKFELDEIG--------------- 435 (726)
Q Consensus 381 L~V~V~~a~~L~~~d--~~g~--~dpyv~v~l-g--~~~~kT~~~-~t~n--P~wne~f~f~v~~--------------- 435 (726)
|+|.|.+|++++..+ ..|. +||||++.+ + ...++|.+. ++.| |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999965433 3564 999999999 3 468999999 9999 9999999988554
Q ss_pred ---------CceeEEEEEEeecCC-CCcceEEEEEEccccccCC
Q 004872 436 ---------GGECLMVKCYNEEIF-GDENMGSARVNLEGLVEGS 469 (726)
Q Consensus 436 ---------~~~~l~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~ 469 (726)
....|.++|||.|.+ .|++||.+.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 135799999999998 8999999999999987654
No 216
>PLN02223 phosphoinositide phospholipase C
Probab=98.83 E-value=1.5e-08 Score=111.26 Aligned_cols=94 Identities=13% Similarity=0.210 Sum_probs=73.2
Q ss_pred ccEEEEEEEeecCCCCC--CCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeeeecCCCCCCcccc
Q 004872 185 GGIVYVRVISASKLSRS--SLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRTDARPGSDPRWDS 256 (726)
Q Consensus 185 ~GvL~V~v~~A~~L~~~--~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt~i~~t~nP~WnE 256 (726)
...|.|+|++|.++... ...|.. ..+||||+|++ | ...+|++..++.||+|||
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~-------------------s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne 468 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRL-------------------SKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGE 468 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCC-------------------CCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecc
Confidence 36799999999998621 111110 11499999999 3 234666667899999999
Q ss_pred eeEEEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872 257 MFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 298 (726)
Q Consensus 257 tf~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~ 298 (726)
+|.|.+..+ -..|+|+|||+|.. .+++++|.+.+|+..|..
T Consensus 469 ~F~F~i~~PELAlLrf~V~D~D~~-~~ddfiGQ~~LPv~~Lr~ 510 (537)
T PLN02223 469 EFTFPLTYPDLALISFEVYDYEVS-TADAFCGQTCLPVSELIE 510 (537)
T ss_pred eeEEEEEccCceEEEEEEEecCCC-CCCcEEEEEecchHHhcC
Confidence 999999777 45799999999986 789999999999999874
No 217
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.82 E-value=3.7e-08 Score=110.26 Aligned_cols=99 Identities=20% Similarity=0.272 Sum_probs=81.1
Q ss_pred ceEEEEEEEEeecCc----c--cccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEE
Q 004872 509 NGWIELVIVEARDLV----A--ADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHV 574 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~----~--~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V 574 (726)
...|+|+|+.|++++ . .+.....||||+|.+.+ .+.+|+++.++.||+|||+|.|++. -..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 1 12234679999999943 4679999999999999999999874 36789999
Q ss_pred EECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872 575 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 610 (726)
Q Consensus 575 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 610 (726)
+|+|..+.|+|+|++.+|+..|..|. +.++|.+
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~ 563 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHS 563 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc---ceEEccC
Confidence 99998888999999999999999886 4567754
No 218
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.80 E-value=5.9e-09 Score=119.33 Aligned_cols=114 Identities=25% Similarity=0.386 Sum_probs=101.6
Q ss_pred cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 556 (726)
Q Consensus 482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 556 (726)
+|+|+++++|. .|.|.|.|.-|++|+-...+..+||||+.++.. .+.||+++++|.||.
T Consensus 1512 ggqV~LsIsY~----------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PT 1575 (1639)
T KOG0905|consen 1512 GGQVKLSISYN----------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPT 1575 (1639)
T ss_pred CceEEEEEEEc----------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCc
Confidence 57999999987 499999999999998777777899999999954 367999999999999
Q ss_pred eeeEEEEe------cCCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872 557 WHQTLEFP------DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 611 (726)
Q Consensus 557 wne~~~f~------v~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 611 (726)
|||.+.+. .....|.++||..+.+..+.++|.+.++|.+++..++...||+|...
T Consensus 1576 fnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1576 FNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred hhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 99999887 24689999999999999999999999999999888888899999753
No 219
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.77 E-value=2.8e-08 Score=84.99 Aligned_cols=86 Identities=16% Similarity=0.305 Sum_probs=67.4
Q ss_pred EEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEccE--EeeeecCCCCCCcccceeEEEEecC
Q 004872 188 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL--TRRTDARPGSDPRWDSMFNMVLHEE 265 (726)
Q Consensus 188 L~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~--~rTt~i~~t~nP~WnEtf~~~v~~~ 265 (726)
|.|+|+.|+|+...+... +. +.+||||.|.++.. .||+. +.||+|||+|.|.| +.
T Consensus 1 L~I~V~~~RdvdH~~~~~------------------~~-~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk 57 (109)
T cd08689 1 LTITITSARDVDHIASPR------------------FS-KRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EK 57 (109)
T ss_pred CEEEEEEEecCccccchh------------------hc-cCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cC
Confidence 689999999998776211 11 11399999999865 44444 58999999999999 56
Q ss_pred CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872 266 TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 298 (726)
Q Consensus 266 ~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~ 298 (726)
...+.|.|||.... ..-.+|-.-+.+.+|.+
T Consensus 58 ~nEiel~VyDk~~~--~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 58 NNEEEVIVYDKGGD--QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CcEEEEEEEeCCCC--eecceeeehhhHHHHHH
Confidence 78899999999753 66689999999998875
No 220
>PLN02228 Phosphoinositide phospholipase C
Probab=98.76 E-value=8.1e-08 Score=107.26 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=88.1
Q ss_pred ceEEEEEEEEeecCcc---c---ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee-eeEEEEecC---CCeEEEE
Q 004872 509 NGWIELVIVEARDLVA---A---DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW-HQTLEFPDD---GSPLTLH 573 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~---~---d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w-ne~~~f~v~---~~~l~i~ 573 (726)
...|+|+|+.|++|+. . +.....||||+|.+.+ .+++|+++.++.||+| ||+|.|++. -..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998731 1 1233479999999843 4679999988999999 999999974 2578999
Q ss_pred EEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE
Q 004872 574 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR 622 (726)
Q Consensus 574 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~ 622 (726)
|+|+|..+.|+++|++.+|++.|..|. +.++|.+.. ...|.+.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~ 560 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFAL 560 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEE
Confidence 999998889999999999999998876 456775322 3667877777
No 221
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.74 E-value=2.9e-08 Score=105.94 Aligned_cols=113 Identities=28% Similarity=0.556 Sum_probs=97.5
Q ss_pred eEEEEEEEEeecCccccc-CCCCccEEEEEECCeEEEeEeeeCCCCCeee-eEEEEecC-----CCeEEEEEEECCCCCC
Q 004872 510 GWIELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH-QTLEFPDD-----GSPLTLHVRDHNALLA 582 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wn-e~~~f~v~-----~~~l~i~V~d~d~~~~ 582 (726)
|.|.|.|..|++||.+|. ....|.||.+.+++..+||.+..+++||.|| +-|.|.|+ +..|.|.++|||.++.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 788999999999999885 4567999999999999999999999999999 57888874 5789999999999999
Q ss_pred CCeeEEEEEEccccCC----------CCceeeEEecCC---CCCeEEEEEEEE
Q 004872 583 SSSIGDCVVEYQRLPP----------NQMADKWIPLQG---VRKGEIHVLITR 622 (726)
Q Consensus 583 d~~lG~~~i~l~~l~~----------~~~~~~w~~L~~---~~~G~i~l~l~~ 622 (726)
++-||.+.|+++.+.. +.....|+++.+ .-+|||.+-+..
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 9999999999987632 234678999865 347999887776
No 222
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.73 E-value=7.4e-08 Score=104.89 Aligned_cols=180 Identities=21% Similarity=0.316 Sum_probs=126.3
Q ss_pred cEEeeeecCCCCCCcccceeEEEEec-CCceEEEEEEEeCCC---CCCcceeEEEEEeceeccCCCcceeecCCCCcccc
Q 004872 239 ELTRRTDARPGSDPRWDSMFNMVLHE-ETGTVRFNLYECIPG---HVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIA 314 (726)
Q Consensus 239 ~~~rTt~i~~t~nP~WnEtf~~~v~~-~~~~L~~~V~D~d~~---~~~dd~lG~~~i~L~~l~~~~~~~~~~~~~~~~~~ 314 (726)
++.||.++.+.+||.|-++|.+..+- ..|.|+|+++|.+.. ....|++|+++..+.++.......
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~----------- 109 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT----------- 109 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----------
Confidence 55789999999999999999888544 489999999998864 135689999999999888543210
Q ss_pred ccccccCceeeeeeecCCccccEEEEEEEeeeeecCCCCCCCCCccCCCCcccccCCccccCCccEEEEEEEEeecCCCC
Q 004872 315 KHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPK 394 (726)
Q Consensus 315 ~~~~~~g~~~~~~~~~~~~~~G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~ 394 (726)
... .+. +-....+|.+.+.. +.+ . .......-..+|++|..+
T Consensus 110 ~~l-------~~~-~~~~~~~g~iti~a--ee~-----~-----------------------~~~~~~~~~~~~~~ld~k 151 (529)
T KOG1327|consen 110 GPL-------LLK-PGKNAGSGTITISA--EED-----E-----------------------SDNDVVQFSFRAKNLDPK 151 (529)
T ss_pred hhh-------hcc-cCccCCcccEEEEe--ecc-----c-----------------------ccCceeeeeeeeeecCcc
Confidence 000 000 00111245554331 110 0 000233344568999999
Q ss_pred CCCCCCCcEEEEEE--C----CeEeecccc-CCCCCceeeEEE----EEeeCCceeEEEEEEeecCC-CCcceEEEEEEc
Q 004872 395 DKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFE----LDEIGGGECLMVKCYNEEIF-GDENMGSARVNL 462 (726)
Q Consensus 395 d~~g~~dpyv~v~l--g----~~~~kT~~~-~t~nP~wne~f~----f~v~~~~~~l~i~V~d~~~~-~d~~iG~~~i~L 462 (726)
|..+++|||..++- + ...++|.++ ++++|.|.+... +...+....+.+.+||.+.. ++++||.+..++
T Consensus 152 d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 152 DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTL 231 (529)
T ss_pred cccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccH
Confidence 99999999999877 2 247999999 999999976321 22223467899999999988 679999999999
Q ss_pred ccccc
Q 004872 463 EGLVE 467 (726)
Q Consensus 463 ~~l~~ 467 (726)
.++..
T Consensus 232 ~~~~~ 236 (529)
T KOG1327|consen 232 SELQE 236 (529)
T ss_pred HHhcc
Confidence 99864
No 223
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.71 E-value=5.3e-08 Score=108.97 Aligned_cols=98 Identities=21% Similarity=0.340 Sum_probs=80.5
Q ss_pred eEEEEEEEEeecCccc-c---cCCCCccEEEEEECC-----eEEEeE-eeeCCCCCeeeeEEEEecC---CCeEEEEEEE
Q 004872 510 GWIELVIVEARDLVAA-D---LRGTSDPYVKVQYGD-----LKKRTK-VIFKTLNPQWHQTLEFPDD---GSPLTLHVRD 576 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~-d---~~g~~DPyv~v~~~~-----~~~kT~-v~~~t~nP~wne~~~f~v~---~~~l~i~V~d 576 (726)
-.|.|.|+.|++++.. + .+..+||||.|.+.+ ...+|+ +..++.||.|+|+|+|++. -.-|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 3799999999976533 2 245789999999955 367899 5556999999999999984 3568999999
Q ss_pred CCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872 577 HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 610 (726)
Q Consensus 577 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 610 (726)
+|..++|+|+|+.++|+..|..|.. -++|.+
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~ 726 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGYR---HVPLLS 726 (746)
T ss_pred cCCCCcccccceeeccHHHhhCcee---eeeecC
Confidence 9999999999999999999998864 456654
No 224
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=5.6e-08 Score=83.18 Aligned_cols=82 Identities=21% Similarity=0.393 Sum_probs=69.7
Q ss_pred EEEEEEEeecCcccc---cCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCee
Q 004872 512 IELVIVEARDLVAAD---LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSI 586 (726)
Q Consensus 512 L~v~v~~a~~L~~~d---~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~d~~l 586 (726)
|.|+|..|+|+...+ ..+.+||||.+.+++. +.||++ +.||.|||+|.|+++ ...+.+.|||... ...-.|
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk~nEiel~VyDk~~-~~~~Pi 76 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEKNNEEEVIVYDKGG-DQPVPV 76 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecCCcEEEEEEEeCCC-Ceecce
Confidence 578999999998777 6788899999999886 889987 489999999999996 6789999999864 334578
Q ss_pred EEEEEEccccC
Q 004872 587 GDCVVEYQRLP 597 (726)
Q Consensus 587 G~~~i~l~~l~ 597 (726)
|-..+.++++.
T Consensus 77 ~llW~~~sdi~ 87 (109)
T cd08689 77 GLLWLRLSDIA 87 (109)
T ss_pred eeehhhHHHHH
Confidence 88888888774
No 225
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.62 E-value=2e-07 Score=103.36 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=89.9
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeCCCCCeee-eEEEEecCC---CeEEEEEEECCC
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQWH-QTLEFPDDG---SPLTLHVRDHNA 579 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~wn-e~~~f~v~~---~~l~i~V~d~d~ 579 (726)
-.|.|.|+.|+.|+.. ..|...|||.|.+-+ ..++|.|..+++||+|| |.|+|.+.+ .-|++.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 5788999999999944 456678999999944 34456667789999999 999999965 468999999999
Q ss_pred CCCCCeeEEEEEEccccCCCCceeeEEecCCCCC-----eEEEEEEEEEecCc
Q 004872 580 LLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK-----GEIHVLITRKVPEL 627 (726)
Q Consensus 580 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~-----G~i~l~l~~~~p~~ 627 (726)
++...|||+++.|+..+..|- +-++|.+... ..|++.+.. .|..
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m-~~~~ 1192 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEM-RPVL 1192 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEe-cccc
Confidence 999999999999999998764 5678887654 445666665 4443
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.62 E-value=1.3e-07 Score=106.07 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=73.9
Q ss_pred ccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeeeecCCCCCCccccee
Q 004872 185 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRTDARPGSDPRWDSMF 258 (726)
Q Consensus 185 ~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt~i~~t~nP~WnEtf 258 (726)
...|.|+|+++.+++...... ..|. +..+||||+|.+ | ...+|+++.++.||+|||+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~---------~~~~-------~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef 531 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKT---------HFDS-------YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEF 531 (598)
T ss_pred CcEEEEEEEEccCccCCCccc---------cCCC-------CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCee
Confidence 368999999999875321100 0011 112599999999 4 23567777899999999999
Q ss_pred EEEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872 259 NMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 298 (726)
Q Consensus 259 ~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~ 298 (726)
.|.+.-+ -..|+|.|+|+|.. .++|++|.+.+|+..|..
T Consensus 532 ~F~l~vPELAllRf~V~d~d~~-~~ddfiGQ~~lPv~~Lr~ 571 (598)
T PLN02230 532 IFPLAVPELALLRVEVHEHDIN-EKDDFGGQTCLPVSEIRQ 571 (598)
T ss_pred EEEEEcCceeEEEEEEEECCCC-CCCCEEEEEEcchHHhhC
Confidence 9998766 47899999999975 689999999999999874
No 227
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.59 E-value=2.6e-07 Score=103.49 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=73.6
Q ss_pred ccEEEEEEEeecCCCC--CCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeeeecCCCCCCcccc
Q 004872 185 GGIVYVRVISASKLSR--SSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRTDARPGSDPRWDS 256 (726)
Q Consensus 185 ~GvL~V~v~~A~~L~~--~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt~i~~t~nP~WnE 256 (726)
...|.|+|++|.+++- ..... + ..+.+||||+|.+ | ...||+++.++.||+|||
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~-----------~-------~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e 512 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHF-----------D-------QYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDE 512 (581)
T ss_pred cceEEEEEEEcccccCCCCcccc-----------C-------CCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCC
Confidence 3579999999998531 11100 0 1123599999999 3 246788888889999999
Q ss_pred eeEEEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872 257 MFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 298 (726)
Q Consensus 257 tf~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~ 298 (726)
+|.|.+..+ -..|+|.|||+|.. ..++++|.+.+|+..|..
T Consensus 513 ~f~F~i~~PeLAllRf~V~d~D~~-~~ddfigq~~lPv~~Lr~ 554 (581)
T PLN02222 513 VFEFPLTVPELALLRLEVHEYDMS-EKDDFGGQTCLPVWELSQ 554 (581)
T ss_pred eeEEEEEcCceeEEEEEEEECCCC-CCCcEEEEEEcchhhhhC
Confidence 999998766 47899999999975 689999999999998874
No 228
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.54 E-value=1.8e-07 Score=104.76 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=74.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeeeec-CCCCCCcccceeE
Q 004872 187 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRTDA-RPGSDPRWDSMFN 259 (726)
Q Consensus 187 vL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt~i-~~t~nP~WnEtf~ 259 (726)
.|.|+|+++.++......+. .|..+||||.|++ | ...+|+++ .++-||.|+|+|.
T Consensus 617 tL~IkI~sGq~~~~~~~~~~------------------~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~ 678 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTK------------------FGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFE 678 (746)
T ss_pred eeEEEEEecCcccCCCCCCc------------------ccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEE
Confidence 79999999997765432111 1223499999999 3 24678855 5889999999999
Q ss_pred EEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872 260 MVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 298 (726)
Q Consensus 260 ~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~ 298 (726)
|.++.+ -.-|+|.|+|+|.. .+|||+|+..+|+.+|..
T Consensus 679 F~l~vPELAliRF~V~d~d~~-~~ddF~GQ~tlP~~~L~~ 717 (746)
T KOG0169|consen 679 FQLSVPELALIRFEVHDYDYI-GKDDFIGQTTLPVSELRQ 717 (746)
T ss_pred EEEeccceeEEEEEEEecCCC-CcccccceeeccHHHhhC
Confidence 999887 47899999999986 789999999999999874
No 229
>PLN02952 phosphoinositide phospholipase C
Probab=98.49 E-value=1.5e-06 Score=97.83 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=80.8
Q ss_pred cEEEEEEEEeecCCCC------CCCCCCCcEEEEEE-C----CeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEE
Q 004872 379 RKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY 445 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~------d~~g~~dpyv~v~l-g----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~ 445 (726)
..|.|+|+.|.+++.. +....+||||+|.+ | ...++|+++ ++.||+||++|.|.+..+ -..+.|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999987421 11234699999999 3 457899999 889999999999998776 467899999
Q ss_pred eecCC-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872 446 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 480 (726)
Q Consensus 446 d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 480 (726)
|+|.. .++++|+..+++..|..+- +|++|.+.
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~ 582 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDK 582 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence 99887 7999999999999997764 68888753
No 230
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.47 E-value=5.3e-07 Score=96.49 Aligned_cols=112 Identities=20% Similarity=0.428 Sum_probs=94.0
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeEeecccc-CCCCCcee-eEEEEEeeC---CceeEEEEEEeecCC-C
Q 004872 379 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYGKIVQRTRTA-HSPNHVWN-QKFELDEIG---GGECLMVKCYNEEIF-G 451 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg~~~~kT~~~-~t~nP~wn-e~f~f~v~~---~~~~l~i~V~d~~~~-~ 451 (726)
|.|.|.|..||+|+.+|.. ...|.||++++++..+||.+. +++||.|| +.|.|.+.+ .++.|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 4799999999999998864 568999999999999999999 99999997 568888766 377999999999988 8
Q ss_pred CcceEEEEEEccccccC----------Ceeeeeeecccc---ccceeEEEEE
Q 004872 452 DENMGSARVNLEGLVEG----------SVRDIWVPLEKV---NTGELRLQIE 490 (726)
Q Consensus 452 d~~iG~~~i~L~~l~~~----------~~~~~w~~L~~~---~~G~I~l~~~ 490 (726)
++-||.+.|+++.+... .....|||+.+. -+|+|.+-+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 89999999999987622 245789998764 3688876554
No 231
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.46 E-value=5.6e-07 Score=99.96 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=71.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeee-ecCCCCCCccc-cee
Q 004872 187 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRT-DARPGSDPRWD-SMF 258 (726)
Q Consensus 187 vL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt-~i~~t~nP~Wn-Etf 258 (726)
.|.|.|+.||.|+.... |. +-|||+|++ | ...+|+ ++.+++||+|| |+|
T Consensus 1066 ~lsv~vigaRHL~k~gr-~i----------------------~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~f 1122 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLGR-SI----------------------ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKF 1122 (1267)
T ss_pred EEEEEEeeccccccCCC-Cc----------------------cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcce
Confidence 57899999999995421 11 259999999 3 344554 56799999999 999
Q ss_pred EEEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872 259 NMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 298 (726)
Q Consensus 259 ~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~ 298 (726)
.|.+.++ -..|+|.|||.|.+ ....|||.+.+|++.+..
T Consensus 1123 tFeI~nPe~A~lRF~V~eeDmf-s~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1123 TFEIYNPEFAFLRFVVYEEDMF-SDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred EEEeeCCceEEEEEEEeccccc-CCcceeeeeecchhhhhc
Confidence 9999988 57999999999987 566799999999988763
No 232
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.46 E-value=5.1e-08 Score=106.89 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=78.1
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--------cEEeeeecCCCCCCcccce
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--------ELTRRTDARPGSDPRWDSM 257 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--------~~~rTt~i~~t~nP~WnEt 257 (726)
-.|.|.|..|+++-+.|.+|.| ||||.|+++ ...||+++++|+||+|+|+
T Consensus 947 q~L~veVlhA~diipLD~NGlS----------------------DPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~ 1004 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLS----------------------DPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDET 1004 (1103)
T ss_pred cchhhhhhccccccccCCCCCC----------------------CCeEEEEeccccccccchhhhhhhhhccccchhhhh
Confidence 4577889999999999999887 999999997 2467999999999999999
Q ss_pred eEEEEecC-----CceEEEEEEEeCCCCCCcceeEEEEEeceecc
Q 004872 258 FNMVLHEE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 297 (726)
Q Consensus 258 f~~~v~~~-----~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~ 297 (726)
|+|.|... ...|.|.|+|+|.. ..+||=|++.+.|+++.
T Consensus 1005 FeFsVp~e~c~te~Am~~FTVMDHD~L-~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1005 FEFSVPPEPCSTETAMLHFTVMDHDYL-RSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eeeecCccccccccceEEEEeecccee-cccccchHHHHhhCCCC
Confidence 99998653 44799999999986 89999999999998876
No 233
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=98.35 E-value=8.9e-07 Score=75.81 Aligned_cols=72 Identities=13% Similarity=0.264 Sum_probs=61.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhhcC-CcccceEEEeEEeeCCCCcccceeeeEeCCCCCEEEEEEeEEecCC
Q 004872 3 VWPGYINPKLSIRFSQIVEKRLKHRK-PRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDAN 74 (726)
Q Consensus 3 ~W~~~~~~~~s~~~~~~ve~~l~~~~-P~~i~~~~~~~f~lG~~pp~i~~v~~~~~~~~d~~~~d~~~~~~~~ 74 (726)
||-.+=++++...+++.++..|+... |+||++|++++++||+.||.|.+++......++...+|++++|.++
T Consensus 8 f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 8 FFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 34444467889999999999999855 9999999999999999999999999876566666999999999974
No 234
>PLN02228 Phosphoinositide phospholipase C
Probab=98.29 E-value=7.8e-06 Score=91.64 Aligned_cols=110 Identities=19% Similarity=0.174 Sum_probs=84.5
Q ss_pred EEEEEEEEeecCCC---CC---CCCCCCcEEEEEE-----CCeEeecccc-CCCCCce-eeEEEEEeeCC-ceeEEEEEE
Q 004872 380 KINVTVVEGKDLMP---KD---KSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVW-NQKFELDEIGG-GECLMVKCY 445 (726)
Q Consensus 380 ~L~V~V~~a~~L~~---~d---~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~w-ne~f~f~v~~~-~~~l~i~V~ 445 (726)
.|.|+|+.|++|+. .+ .....||||+|.+ +...++|+++ ++.||.| |+.|.|.+..+ -..|+|.|+
T Consensus 432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~ 511 (567)
T PLN02228 432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQ 511 (567)
T ss_pred eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEE
Confidence 79999999998731 11 2234799999998 2346899999 8899999 99999998776 468999999
Q ss_pred eecCC-CCcceEEEEEEccccccCCeeeeeeeccccc-----cceeEEEEEEE
Q 004872 446 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT 492 (726)
Q Consensus 446 d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~~ 492 (726)
|++.. .++++|+..+++..|..+- +.++|.+.. .+.|.+.+.+.
T Consensus 512 D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 512 DYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred eCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 99876 7899999999999997654 456775532 24566666544
No 235
>PLN02352 phospholipase D epsilon
Probab=98.29 E-value=4.2e-06 Score=95.83 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=85.8
Q ss_pred CCceEEEEEEEEeecCccc----cc-CCCCccEEEEEECCeE-EEeEeeeCCCCCeeeeEEEEecC--C-CeEEEEEEEC
Q 004872 507 SGNGWIELVIVEARDLVAA----DL-RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD--G-SPLTLHVRDH 577 (726)
Q Consensus 507 ~~~g~L~v~v~~a~~L~~~----d~-~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~--~-~~l~i~V~d~ 577 (726)
.-.|.|.++|++|+-+... +. ....||||.|.+++.+ .|| .+.-||+|||+|.+++. . ..+.|.|.|
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~- 82 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT- 82 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence 3458999999999843221 11 1123999999998864 478 55669999999999984 3 569999998
Q ss_pred CCCCCCCeeEEEEEEccccCCCCc-eeeEEecCCCC----C-eEEEEEEEEEecCcc
Q 004872 578 NALLASSSIGDCVVEYQRLPPNQM-ADKWIPLQGVR----K-GEIHVLITRKVPELD 628 (726)
Q Consensus 578 d~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~----~-G~i~l~l~~~~p~~~ 628 (726)
...+||.+.||..++..+.. .+.|+++.+.. . ..|+++++| .|...
T Consensus 83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~ 134 (758)
T PLN02352 83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWF-RPAEL 134 (758)
T ss_pred ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEE-EEhhh
Confidence 25699999999999988765 99999996421 2 499999999 66543
No 236
>PLN02352 phospholipase D epsilon
Probab=98.20 E-value=1e-05 Score=92.78 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=89.5
Q ss_pred ccEEEEEEEEeecCCCC----CC-CCCCCcEEEEEEC-CeEeeccccCCCCCceeeEEEEEeeCCc-eeEEEEEEeecCC
Q 004872 378 GRKINVTVVEGKDLMPK----DK-SGKCDPYVKLQYG-KIVQRTRTAHSPNHVWNQKFELDEIGGG-ECLMVKCYNEEIF 450 (726)
Q Consensus 378 ~~~L~V~V~~a~~L~~~----d~-~g~~dpyv~v~lg-~~~~kT~~~~t~nP~wne~f~f~v~~~~-~~l~i~V~d~~~~ 450 (726)
.|.|.++|.+|+-+... +. ....+|||.|.++ ..+.|| .+..||.|+|+|.+.+.... ..+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt--~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT--SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC--CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 35899999999844221 11 1223999999995 557788 43449999999999998876 789999988
Q ss_pred CCcceEEEEEEccccccCCe-eeeeeeccccc----c-ceeEEEEEEEEecCC
Q 004872 451 GDENMGSARVNLEGLVEGSV-RDIWVPLEKVN----T-GELRLQIEATRVDDN 497 (726)
Q Consensus 451 ~d~~iG~~~i~L~~l~~~~~-~~~w~~L~~~~----~-G~I~l~~~~~~~~~~ 497 (726)
+..+||.+.++..++..+.. .+.||++.+.. . .+|+++++|.++...
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 36799999999999998865 89999997642 2 589999999997643
No 237
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.19 E-value=2.1e-06 Score=99.07 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=87.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C---CeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeec
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G---KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 448 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g---~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~ 448 (726)
++|.|.|+.|++|+-...+..+||||+.++ + ..+.||+++ +|.||.|||...+.... .+..|.+.||..+
T Consensus 1524 ~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~ 1603 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNG 1603 (1639)
T ss_pred ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeeccc
Confidence 489999999999976666788999999999 2 347899999 99999999999887333 2578999999998
Q ss_pred CC-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872 449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 480 (726)
Q Consensus 449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 480 (726)
.. .+.++|.+.++|.++....+...||+|...
T Consensus 1604 ~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1604 GLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred ceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 88 788999999999999877777799999764
No 238
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.13 E-value=4.8e-06 Score=73.57 Aligned_cols=97 Identities=21% Similarity=0.383 Sum_probs=75.5
Q ss_pred EEEEEEEeecCccccc-------------CCCCccEEEEEE----CCeEEEeEeeeCCCCCeeeeEEEEecC--------
Q 004872 512 IELVIVEARDLVAADL-------------RGTSDPYVKVQY----GDLKKRTKVIFKTLNPQWHQTLEFPDD-------- 566 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~-------------~g~~DPyv~v~~----~~~~~kT~v~~~t~nP~wne~~~f~v~-------- 566 (726)
|.|.|.+|.+|.++.. .-..++||++.+ .++..+|+++.++..|.|+.+++|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678899999874321 112489999996 346789999999999999999999862
Q ss_pred ----------CCeEEEEEEECCCC----------CCCCeeEEEEEEccccC-CCCceeeEEec
Q 004872 567 ----------GSPLTLHVRDHNAL----------LASSSIGDCVVEYQRLP-PNQMADKWIPL 608 (726)
Q Consensus 567 ----------~~~l~i~V~d~d~~----------~~d~~lG~~~i~l~~l~-~~~~~~~w~~L 608 (726)
...+.++||+.+.- .+|-.||.+.||+.+|. .......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 46799999987642 24668999999999985 44578899985
No 239
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.90 E-value=0.0014 Score=69.39 Aligned_cols=211 Identities=16% Similarity=0.187 Sum_probs=151.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC--------CceeEEEEEEeecCC-
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--------GGECLMVKCYNEEIF- 450 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~--------~~~~l~i~V~d~~~~- 450 (726)
+.|.|.+|++.+.. ....-.+..+++++...|..+ ++..|.||..+...+.. ....|++++|.-+..
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 67899999999865 234567888999999999999 99999999988877432 367899999988733
Q ss_pred -CCcceEEEEEEcccc---ccC--Ceeeeeeecccc------ccceeEEEEEEEEecCC-----C--------CCCC---
Q 004872 451 -GDENMGSARVNLEGL---VEG--SVRDIWVPLEKV------NTGELRLQIEATRVDDN-----E--------GSRG--- 502 (726)
Q Consensus 451 -~d~~iG~~~i~L~~l---~~~--~~~~~w~~L~~~------~~G~I~l~~~~~~~~~~-----~--------~~~~--- 502 (726)
..+.||.+.++|+.. ..+ .....||+|-+. .+-+|.+.+....-... . ...+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 778999999999998 544 356799999875 24677777765532210 0 0000
Q ss_pred --------------------------CCCCCCceEEEEEEEEeecCcccc------cCCCCccEEEEEECCeEEEeEeee
Q 004872 503 --------------------------QNIGSGNGWIELVIVEARDLVAAD------LRGTSDPYVKVQYGDLKKRTKVIF 550 (726)
Q Consensus 503 --------------------------~~~~~~~g~L~v~v~~a~~L~~~d------~~g~~DPyv~v~~~~~~~kT~v~~ 550 (726)
.........|.|++..|.||...- ..+...-|...++-+....|....
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 011233567889999999986541 123456677777877788888888
Q ss_pred CCCCCeee-eEEE-Eec------------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCC
Q 004872 551 KTLNPQWH-QTLE-FPD------------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN 599 (726)
Q Consensus 551 ~t~nP~wn-e~~~-f~v------------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~ 599 (726)
...+|.|. |+-. |.+ ....|.|.++.. +..||.+.|++..+...
T Consensus 239 ~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 239 SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccCC
Confidence 88888775 3333 554 246788888764 55899999999988644
No 240
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=1.5e-05 Score=82.41 Aligned_cols=104 Identities=32% Similarity=0.395 Sum_probs=88.0
Q ss_pred CCceEEEEEEEEeecCccccc-CCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEec--CCCeEEEEEE-EC
Q 004872 507 SGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPD--DGSPLTLHVR-DH 577 (726)
Q Consensus 507 ~~~g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v--~~~~l~i~V~-d~ 577 (726)
...|.+.|.|++|++|..+.. ...++|||+|++.+ .+.+|+...+|++|.|.+...|.- ....|.+.|| |+
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence 457999999999999976543 33789999999943 367999999999999999998885 4788999999 77
Q ss_pred CCCCCCCeeEEEEEEccccCCCC-ceeeEEecCC
Q 004872 578 NALLASSSIGDCVVEYQRLPPNQ-MADKWIPLQG 610 (726)
Q Consensus 578 d~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~ 610 (726)
.+..++.|+|.+.+-+.++.... ....||+|-+
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 78888899999999999997765 7889999976
No 241
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.79 E-value=2.6e-05 Score=69.00 Aligned_cols=97 Identities=20% Similarity=0.328 Sum_probs=73.9
Q ss_pred EEEEEEEeecCCCCC-------C------CCCCCcEEEEEE----CCeEeecccc-CCCCCceeeEEEEEee--------
Q 004872 381 INVTVVEGKDLMPKD-------K------SGKCDPYVKLQY----GKIVQRTRTA-HSPNHVWNQKFELDEI-------- 434 (726)
Q Consensus 381 L~V~V~~a~~L~~~d-------~------~g~~dpyv~v~l----g~~~~kT~~~-~t~nP~wne~f~f~v~-------- 434 (726)
|.|.|++|.+|.... . .-..|+||++.+ +++..+|+++ ++-.|.|+..++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 357788887774321 0 124689999986 5778999999 9999999999999965
Q ss_pred C--------CceeEEEEEEeecCC-----------CCcceEEEEEEccccccCC-eeeeeeec
Q 004872 435 G--------GGECLMVKCYNEEIF-----------GDENMGSARVNLEGLVEGS-VRDIWVPL 477 (726)
Q Consensus 435 ~--------~~~~l~i~V~d~~~~-----------~d~~iG~~~i~L~~l~~~~-~~~~w~~L 477 (726)
. ....+.++||+.... +|-++|.+.||+.+|+... ....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 134789999997543 4568999999999998654 67899975
No 242
>PLN02964 phosphatidylserine decarboxylase
Probab=97.78 E-value=3.2e-05 Score=88.15 Aligned_cols=86 Identities=15% Similarity=0.330 Sum_probs=70.8
Q ss_pred cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcE-EEEEEc-cEEeeeecCCCCCCcccceeEEE
Q 004872 184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTF-VEIELE-ELTRRTDARPGSDPRWDSMFNMV 261 (726)
Q Consensus 184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPy-V~v~~g-~~~rTt~i~~t~nP~WnEtf~~~ 261 (726)
..|++.++|++|+ ++.. ||| +.+++| +..||.+.++|.||+|||...|+
T Consensus 52 ~~~~~~~~~~~~~----~~~~-------------------------~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~ 102 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFK-------------------------DKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLL 102 (644)
T ss_pred ccCeEEEEeehhh----hccC-------------------------CcEEEEEEecceeeeeccccccCCcccchhhceE
Confidence 4599999999998 3331 554 556667 57899999999999999999999
Q ss_pred EecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccCC
Q 004872 262 LHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 299 (726)
Q Consensus 262 v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~ 299 (726)
|... ....+|.|||++.. .+++++|.|+++|.++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~-s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 103 LEKNGPHLARISVFETNRL-SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred eccCCcceEEEEEEecCCC-CHHHhhhheeecHhhccHH
Confidence 8765 44579999999997 8999999999999776643
No 243
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.50 E-value=0.00011 Score=60.38 Aligned_cols=91 Identities=14% Similarity=0.306 Sum_probs=67.9
Q ss_pred EEEEEeecCccccc-CCCCccEEEEEE--C-CeEEEeEeeeCCCCCeeeeEEEEec-----CCCeEEEEEEECCCCCCCC
Q 004872 514 LVIVEARDLVAADL-RGTSDPYVKVQY--G-DLKKRTKVIFKTLNPQWHQTLEFPD-----DGSPLTLHVRDHNALLASS 584 (726)
Q Consensus 514 v~v~~a~~L~~~d~-~g~~DPyv~v~~--~-~~~~kT~v~~~t~nP~wne~~~f~v-----~~~~l~i~V~d~d~~~~d~ 584 (726)
+++++++||.-... ...+.-|++-.+ . ....||.+.+...||+|+|+|.|.+ ..-.|.+.|+. ...+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 68889999864332 334455666444 2 2467999999999999999999997 36788999998 456788
Q ss_pred eeEEEEEEccccCCCCceeeEEe
Q 004872 585 SIGDCVVEYQRLPPNQMADKWIP 607 (726)
Q Consensus 585 ~lG~~~i~l~~l~~~~~~~~w~~ 607 (726)
.||.|.+.++.+.++ +...|.+
T Consensus 81 ~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred eeeEEEeecccCCHH-Hhhhhhc
Confidence 999999999988654 3456654
No 244
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.32 E-value=0.0002 Score=58.93 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=68.0
Q ss_pred EEEEEEeecCCCCC-CCCCCCcEEEEEE--C-CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCCCCc
Q 004872 382 NVTVVEGKDLMPKD-KSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIFGDE 453 (726)
Q Consensus 382 ~V~V~~a~~L~~~d-~~g~~dpyv~v~l--g-~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~~d~ 453 (726)
.+++.+|+||.-.. ....+.-|++=.+ . ...+||... +..||+|.|+|.|.+.. ++-.|.|+|+..-+ +.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence 58899999995322 2334556776444 3 457899999 99999999999999765 36688999998322 788
Q ss_pred ceEEEEEEccccccCCeeeeeee
Q 004872 454 NMGSARVNLEGLVEGSVRDIWVP 476 (726)
Q Consensus 454 ~iG~~~i~L~~l~~~~~~~~w~~ 476 (726)
.||.+.+.++++-.. +..+|..
T Consensus 81 ~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred eeeEEEeecccCCHH-Hhhhhhc
Confidence 999999999987432 3345643
No 245
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.17 E-value=0.00034 Score=73.17 Aligned_cols=117 Identities=16% Similarity=0.241 Sum_probs=95.0
Q ss_pred ceEEEEEEEEeecCcccccCCCCccEEEEEE---C--CeEEEeEeeeCCCCCeeeeEEEEecC--------------CCe
Q 004872 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQY---G--DLKKRTKVIFKTLNPQWHQTLEFPDD--------------GSP 569 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~---~--~~~~kT~v~~~t~nP~wne~~~f~v~--------------~~~ 569 (726)
...|.+.|.++.+++........|-|+++.+ + .++.+|.+++.|.+|.|+|.|.+.+. ...
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 4567888899998886654556688999987 2 35779999999999999999999873 357
Q ss_pred EEEEEEECCCC-CCCCeeEEEEEEccccCCCCceeeEEecCC---CCCeEEEEEEEEEec
Q 004872 570 LTLHVRDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQG---VRKGEIHVLITRKVP 625 (726)
Q Consensus 570 l~i~V~d~d~~-~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~---~~~G~i~l~l~~~~p 625 (726)
+.|++|++..| ..|.++|.+.+.|..|.........++|.+ ..+|.|.+++.++-|
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEecc
Confidence 99999998875 568899999999999988878888899864 246999999988544
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.08 E-value=0.00062 Score=77.91 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=73.0
Q ss_pred CCceEEEEEEEEeecCcccccCCCCccEEE-EEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCC
Q 004872 507 SGNGWIELVIVEARDLVAADLRGTSDPYVK-VQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLA 582 (726)
Q Consensus 507 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~-v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~ 582 (726)
.-.|...+++.+|+ ++ ..|||.. +++|.+.+||.+.++|+||+||+...|.+. ....++.|||.+.+++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 123 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK 123 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence 45688999999997 32 3589776 556889999999999999999998888873 3446999999999999
Q ss_pred CCeeEEEEEEccccCCCCc
Q 004872 583 SSSIGDCVVEYQRLPPNQM 601 (726)
Q Consensus 583 d~~lG~~~i~l~~l~~~~~ 601 (726)
++.+|.|.++|..+...+.
T Consensus 124 n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred HHhhhheeecHhhccHHHH
Confidence 9999999999988765543
No 247
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.06 E-value=0.0057 Score=64.92 Aligned_cols=108 Identities=21% Similarity=0.308 Sum_probs=91.0
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC----------CCeEEEEEEECC-CC
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----------GSPLTLHVRDHN-AL 580 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----------~~~l~i~V~d~d-~~ 580 (726)
+.|.|.+|++++.. ..-.-.+...+++....|..+..+-.|.||..+.+.++ +..|++++|..| .-
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 67899999999876 23456788889999999999999999999999999873 678999999988 55
Q ss_pred CCCCeeEEEEEEcccc---CCC--CceeeEEecCCC------CCeEEEEEEEE
Q 004872 581 LASSSIGDCVVEYQRL---PPN--QMADKWIPLQGV------RKGEIHVLITR 622 (726)
Q Consensus 581 ~~d~~lG~~~i~l~~l---~~~--~~~~~w~~L~~~------~~G~i~l~l~~ 622 (726)
+..+.+|.+.++|... ..+ ....+||+|-+. .+-||++.+.+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i 131 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI 131 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence 7788999999999988 554 567899999764 35789888887
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.00041 Score=72.08 Aligned_cols=103 Identities=21% Similarity=0.314 Sum_probs=84.2
Q ss_pred ccEEEEEEEEeecCCCCCCC-CCCCcEEEEEE--CC---eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEee-cC
Q 004872 378 GRKINVTVVEGKDLMPKDKS-GKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNE-EI 449 (726)
Q Consensus 378 ~~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~-~~ 449 (726)
.|.+.|.|++|++|..+... ..++|||+||+ ++ .+.+|+.. +|.+|-|-+...|....+...|.+.||-. .+
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygR 347 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGR 347 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccc
Confidence 35899999999999765433 37899999999 22 26788888 99999998888888667789999999954 44
Q ss_pred C-CCcceEEEEEEccccccCC-eeeeeeecccc
Q 004872 450 F-GDENMGSARVNLEGLVEGS-VRDIWVPLEKV 480 (726)
Q Consensus 450 ~-~d~~iG~~~i~L~~l~~~~-~~~~w~~L~~~ 480 (726)
. .+.|+|.+.+-+.++.... ....||+|.+.
T Consensus 348 md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 348 MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 4 7889999999999997666 67899999874
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.90 E-value=0.00069 Score=70.95 Aligned_cols=113 Identities=18% Similarity=0.316 Sum_probs=90.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---C--CeEeecccc-CCCCCceeeEEEEEeeCC------------ceeEE
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---G--KIVQRTRTA-HSPNHVWNQKFELDEIGG------------GECLM 441 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g--~~~~kT~~~-~t~nP~wne~f~f~v~~~------------~~~l~ 441 (726)
.|.+.|.++.+++.-......|.|+++.+ + .+..+|.++ .+.+|.|+|.|.+.+... +..+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 57888888988876543445688999888 3 346777778 999999999999997652 23689
Q ss_pred EEEEeecCC--CCcceEEEEEEccccccCCeeeeeeeccccc---cceeEEEEEEE
Q 004872 442 VKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKVN---TGELRLQIEAT 492 (726)
Q Consensus 442 i~V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~---~G~I~l~~~~~ 492 (726)
|++|++..+ +|.++|.+.+.|..|.........++|.+.. .|.+.+.+...
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 999999888 8999999999999998777777889998642 58888888765
No 250
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.05 E-value=0.075 Score=49.69 Aligned_cols=119 Identities=12% Similarity=0.262 Sum_probs=85.6
Q ss_pred CCceEEEEEEEEeecCccccc--CCCCccEEEEE--ECCeEEEeEeeeCCCCCeeeeEEEEecC----------------
Q 004872 507 SGNGWIELVIVEARDLVAADL--RGTSDPYVKVQ--YGDLKKRTKVIFKTLNPQWHQTLEFPDD---------------- 566 (726)
Q Consensus 507 ~~~g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~--~~~~~~kT~v~~~t~nP~wne~~~f~v~---------------- 566 (726)
+....|.+.|..++-+..--. .+..+.-+.+. +++++++|+.+.-+.+|.|+|.|.|+++
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 566788999999886542211 14455555544 5899999999999999999999999973
Q ss_pred CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCce--eeEEecCC------CCCeEEEEEEEEEecC
Q 004872 567 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA--DKWIPLQG------VRKGEIHVLITRKVPE 626 (726)
Q Consensus 567 ~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~------~~~G~i~l~l~~~~p~ 626 (726)
.+.+++-|.-.|..+...++|.-.++-..+...... ..-..|.| ...|-|.+++++ +|.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lEL-lP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLEL-LPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEe-ecC
Confidence 356888898888777678999998887776543332 23344443 245999999998 654
No 251
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.69 E-value=0.038 Score=63.41 Aligned_cols=109 Identities=17% Similarity=0.280 Sum_probs=79.6
Q ss_pred CCceEEEEEEEEeecCcccccCCCCccEEEEEECC-------eEEEeEeee-CCCCCeeee-EEEEec----CCCeEEEE
Q 004872 507 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-------LKKRTKVIF-KTLNPQWHQ-TLEFPD----DGSPLTLH 573 (726)
Q Consensus 507 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~v~~-~t~nP~wne-~~~f~v----~~~~l~i~ 573 (726)
--.+.+.|+|+.|+-|..++ ...||.|.+-+ ..++|+++. +++||+|+| .|.|.- .-..|+|.
T Consensus 700 vIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia 775 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA 775 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence 34578999999999997664 45899999843 356888876 489999996 788872 35789999
Q ss_pred EEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE--EecC
Q 004872 574 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR--KVPE 626 (726)
Q Consensus 574 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~--~~p~ 626 (726)
||+.. ..+||+-.+|++.+..|. +.+.|.... --.|.+.+.+ |+|.
T Consensus 776 vyeEg----gK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~lp~Lfv~i~~kdyvpd 828 (1189)
T KOG1265|consen 776 VYEEG----GKFIGQRILPVDGLNAGY---RHVCLRSESNQPLTLPALFVYIVLKDYVPD 828 (1189)
T ss_pred eeccC----CceeeeeccchhcccCcc---eeEEecCCCCCccccceeEEEEEeeccCCc
Confidence 99865 459999999999998876 345554321 1345555444 5664
No 252
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.33 E-value=0.11 Score=49.12 Aligned_cols=84 Identities=10% Similarity=0.178 Sum_probs=57.2
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--ccE-----EeeeecCCCCCCccccee
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL-----TRRTDARPGSDPRWDSMF 258 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g~~-----~rTt~i~~t~nP~WnEtf 258 (726)
.-++|+|++|+++.-.+. .|=||++.+ |.. ..|+.+. ..++.|||..
T Consensus 8 ~~~~v~i~~~~~~~~~~~-------------------------~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL 61 (158)
T cd08398 8 SNLRIKILCATYVNVNDI-------------------------DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWL 61 (158)
T ss_pred CCeEEEEEeeccCCCCCc-------------------------CeEEEEEEEEECCEEccCeeEecccC-CCCCccceeE
Confidence 457899999999875431 166888877 432 1233333 4789999998
Q ss_pred EEEE--ecC--CceEEEEEEEeCCCCC-C--cceeEEEEEecee
Q 004872 259 NMVL--HEE--TGTVRFNLYECIPGHV-K--YDYLTSCEVKMKY 295 (726)
Q Consensus 259 ~~~v--~~~--~~~L~~~V~D~d~~~~-~--dd~lG~~~i~L~~ 295 (726)
.|.+ .+. ...|.|.||+...... + ...+|.+.++|=+
T Consensus 62 ~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 62 DYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 8874 444 6799999999874211 1 2469999988844
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.08 E-value=0.2 Score=46.85 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=67.0
Q ss_pred cEEEEEEEEeecCCCCC--CCCCCCcEEEEEE--CCeEeecccc-CCCCCceeeEEEEEeeCC--------------cee
Q 004872 379 RKINVTVVEGKDLMPKD--KSGKCDPYVKLQY--GKIVQRTRTA-HSPNHVWNQKFELDEIGG--------------GEC 439 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d--~~g~~dpyv~v~l--g~~~~kT~~~-~t~nP~wne~f~f~v~~~--------------~~~ 439 (726)
..|.+.|..++-...-- ..+..+.-..+++ +++.++|+.+ .+.+|.|+|.|.|.+... .+.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 37999999988653211 1145555555555 8999999999 999999999999996543 246
Q ss_pred EEEEEEeecCC-CCcceEEEEEEccccccCCe
Q 004872 440 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSV 470 (726)
Q Consensus 440 l~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~ 470 (726)
+++.|...+.. ...++|+-.++.+.+...+.
T Consensus 89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~ 120 (156)
T PF15627_consen 89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN 120 (156)
T ss_pred eEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence 78888777765 45788888888887765443
No 254
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.92 E-value=0.16 Score=48.95 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=61.0
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEE--CCeE----EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH 577 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~ 577 (726)
..++|+|..++++.. .....+-||++.+ |++. ..|+.+.-+.++.|||.+.|++. ...|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 478999999999986 2345677888755 5543 35555554567999999999873 67899999987
Q ss_pred CCCC----------------CCCeeEEEEEEcccc
Q 004872 578 NALL----------------ASSSIGDCVVEYQRL 596 (726)
Q Consensus 578 d~~~----------------~d~~lG~~~i~l~~l 596 (726)
.... .+..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 6422 245788888887654
No 255
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.91 E-value=0.16 Score=49.05 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=56.7
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--ccE-----EeeeecCCCCCCccccee
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL-----TRRTDARPGSDPRWDSMF 258 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g~~-----~rTt~i~~t~nP~WnEtf 258 (726)
--++|+|++|.+|.-.+.. .+=||++.+ |.. ..|+.+.-..++.|||.+
T Consensus 8 ~~f~i~i~~~~~~~~~~~~------------------------~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl 63 (173)
T cd08693 8 EKFSITLHKISNLNAAERT------------------------MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETL 63 (173)
T ss_pred CCEEEEEEEeccCccCCCC------------------------ceEEEEEEEEECCEEccCceEccccCCCCccccceeE
Confidence 3578999999999862211 145777766 421 233333445679999998
Q ss_pred EEEE--ecC--CceEEEEEEEeCCCC---------------CCcceeEEEEEecee
Q 004872 259 NMVL--HEE--TGTVRFNLYECIPGH---------------VKYDYLTSCEVKMKY 295 (726)
Q Consensus 259 ~~~v--~~~--~~~L~~~V~D~d~~~---------------~~dd~lG~~~i~L~~ 295 (726)
.|.+ .+. +..|.|.||+..... .++..||.+.++|=+
T Consensus 64 ~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 64 EFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 8874 454 679999999976421 123588888888743
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.39 E-value=0.061 Score=61.83 Aligned_cols=91 Identities=27% Similarity=0.413 Sum_probs=70.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-C------CeEeecccc--CCCCCceeeE-EEEE--eeCCceeEEEEEEe
Q 004872 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-G------KIVQRTRTA--HSPNHVWNQK-FELD--EIGGGECLMVKCYN 446 (726)
Q Consensus 379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-g------~~~~kT~~~--~t~nP~wne~-f~f~--v~~~~~~l~i~V~d 446 (726)
+.+.|+|+.+.-|..++ ...||.|.+ | ...+||++. ++.||+|+|. |.|. +.+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 47999999999997654 348999998 3 347899998 8999999864 6666 22346689999999
Q ss_pred ecCCCCcceEEEEEEccccccCCeeeeeeeccc
Q 004872 447 EEIFGDENMGSARVNLEGLVEGSVRDIWVPLEK 479 (726)
Q Consensus 447 ~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 479 (726)
.. ..+||+-.+++..+..+- +.+.|..
T Consensus 779 Eg---gK~ig~RIlpvd~l~~GY---rhv~LRs 805 (1189)
T KOG1265|consen 779 EG---GKFIGQRILPVDGLNAGY---RHVCLRS 805 (1189)
T ss_pred cC---CceeeeeccchhcccCcc---eeEEecC
Confidence 85 679999999999986553 3445543
No 257
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.39 E-value=0.27 Score=46.62 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=61.0
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEE--CCeEE----EeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLKK----RTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH 577 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~ 577 (726)
..++|.|+.|+++... ..+|-||++.+ |++.. .|+.+.- .++.|||-+.|++. +..|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4688999999998764 34688999866 55432 4443433 67999999999873 67899999987
Q ss_pred CCCC----CCCeeEEEEEEccccC
Q 004872 578 NALL----ASSSIGDCVVEYQRLP 597 (726)
Q Consensus 578 d~~~----~d~~lG~~~i~l~~l~ 597 (726)
..-. ....+|.+.++|-+-.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC
Confidence 6421 1246999999987643
No 258
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.36 E-value=1.1 Score=41.57 Aligned_cols=112 Identities=18% Similarity=0.279 Sum_probs=78.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---Eeecccc--CCCCCceeeEEEEEeeC---------CceeEEEEEE
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI---VQRTRTA--HSPNHVWNQKFELDEIG---------GGECLMVKCY 445 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~---~~kT~~~--~t~nP~wne~f~f~v~~---------~~~~l~i~V~ 445 (726)
.+.++|++..+++. .....||+...++. ..+|... .+..-.|++.|.+.+.- ....+.|.|+
T Consensus 8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 68899999998876 22334555555544 3566665 66678999999887532 1347888998
Q ss_pred eecCCCC-cceEEEEEEccccccC--Ceeeeeeecccc--ccceeEEEEEEEEec
Q 004872 446 NEEIFGD-ENMGSARVNLEGLVEG--SVRDIWVPLEKV--NTGELRLQIEATRVD 495 (726)
Q Consensus 446 d~~~~~d-~~iG~~~i~L~~l~~~--~~~~~w~~L~~~--~~G~I~l~~~~~~~~ 495 (726)
.....+. ..+|.+.++|.++... .....-++|... ....+.+++....+.
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELR 138 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECc
Confidence 8754323 5999999999999874 355677788765 357788888777654
No 259
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.91 E-value=0.3 Score=46.24 Aligned_cols=87 Identities=17% Similarity=0.108 Sum_probs=60.5
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEE--CCeE----EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH 577 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~ 577 (726)
..++|.+....++... .....+-||++.+ |++. ..|.......++.|||.+.|++. +..|.|+||+.
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 4567778888777651 1234677777765 5542 23333333468999999999962 67899999998
Q ss_pred CCCC--CCCeeEEEEEEccccC
Q 004872 578 NALL--ASSSIGDCVVEYQRLP 597 (726)
Q Consensus 578 d~~~--~d~~lG~~~i~l~~l~ 597 (726)
+..+ .+..||.+.++|-+-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7654 4679999999988653
No 260
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.87 E-value=0.33 Score=46.04 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=57.2
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--ccE----EeeeecCC-CCCCccccee
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDARP-GSDPRWDSMF 258 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g~~----~rTt~i~~-t~nP~WnEtf 258 (726)
.-++|+|+.+.++...+. .. .+=||++.+ |.. .+++.... ..++.|||..
T Consensus 8 ~~~~i~i~~~~~~~~~~~-~~----------------------~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l 64 (156)
T cd08380 8 FNLRIKIHGITNINLLDS-ED----------------------LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWL 64 (156)
T ss_pred CCeEEEEEeeccccccCC-Cc----------------------eeEEEEEEEEECCEEccCceeccCCcCCCCCccccee
Confidence 346788888888765110 00 145777766 432 12333333 3789999998
Q ss_pred EEEE--ecC--CceEEEEEEEeCCCC-CCcceeEEEEEecee
Q 004872 259 NMVL--HEE--TGTVRFNLYECIPGH-VKYDYLTSCEVKMKY 295 (726)
Q Consensus 259 ~~~v--~~~--~~~L~~~V~D~d~~~-~~dd~lG~~~i~L~~ 295 (726)
.|.+ .+. +..|.|.||+.+... .++..||.+.++|=+
T Consensus 65 ~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 65 TFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 8874 444 679999999988641 145799999999843
No 261
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.81 E-value=1.9 Score=39.89 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=76.2
Q ss_pred CceEEEEEEEEeecCcccccCCCCccEEEEEECCeE---EEeEeee-CCCCCeeeeEEEEec-----------CCCeEEE
Q 004872 508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK---KRTKVIF-KTLNPQWHQTLEFPD-----------DGSPLTL 572 (726)
Q Consensus 508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~v~~-~t~nP~wne~~~f~v-----------~~~~l~i 572 (726)
....+.+.|.+..+++. ...--||+...++.. .+|.... .+-.-.|||.|.+++ ....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 34677889999998886 233445555555543 3444333 355689999999986 1346899
Q ss_pred EEEECCCCCCCCeeEEEEEEccccCCC--CceeeEEecCCC--CCeEEEEEEEE
Q 004872 573 HVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQGV--RKGEIHVLITR 622 (726)
Q Consensus 573 ~V~d~d~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~--~~G~i~l~l~~ 622 (726)
.|+....-++...+|.+.++|.+.... .....-++|.+. ....|++++.+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~ 134 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISL 134 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEE
Confidence 999875433336899999999999763 456677888764 34678888877
No 262
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.67 E-value=0.28 Score=47.27 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=64.5
Q ss_pred ceEEEEEEEEeecCcccccCCCCccEEEEEE--CCeE----EEeEeee--C--CCCCeeeeEEEEecC------CCeEEE
Q 004872 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIF--K--TLNPQWHQTLEFPDD------GSPLTL 572 (726)
Q Consensus 509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~--~--t~nP~wne~~~f~v~------~~~l~i 572 (726)
...++|+|..+++++........|-||.+.+ |++. ..|+... + ...+.|||-+.|++. +..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3568899999999998766556888999866 5543 2444321 1 235789999999973 678999
Q ss_pred EEEECCCCC---------CCCeeEEEEEEcccc
Q 004872 573 HVRDHNALL---------ASSSIGDCVVEYQRL 596 (726)
Q Consensus 573 ~V~d~d~~~---------~d~~lG~~~i~l~~l 596 (726)
++|+....+ .+..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999877544 356899999988764
No 263
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.64 E-value=0.25 Score=46.96 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=60.5
Q ss_pred CCCccEEEEEE--CCeE----EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCCCCCCCeeEEEEEEcccc
Q 004872 529 GTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNALLASSSIGDCVVEYQRL 596 (726)
Q Consensus 529 g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l 596 (726)
..+|-||++.+ +++. ..|..+.-+..+.|||-+.|++. +..|.|+|||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45788888876 4442 35555555667899999999973 678999999988666677999999998865
Q ss_pred CCCCceeeEEecCCCCCeEEEEEEEE
Q 004872 597 PPNQMADKWIPLQGVRKGEIHVLITR 622 (726)
Q Consensus 597 ~~~~~~~~w~~L~~~~~G~i~l~l~~ 622 (726)
.. ++ .+|...+.+..
T Consensus 108 ~g------~L-----r~G~~~l~lw~ 122 (159)
T cd08397 108 DG------TL-----RRGRQKLRVWP 122 (159)
T ss_pred CC------cE-----ecCCEEEEEEe
Confidence 31 11 35777777754
No 264
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.46 E-value=0.48 Score=45.02 Aligned_cols=64 Identities=6% Similarity=0.154 Sum_probs=47.6
Q ss_pred CcEEEEEE--ccE-----EeeeecCCCCCCcccceeEEEE--ecC--CceEEEEEEEeCCCCCCcceeEEEEEece
Q 004872 230 TTFVEIEL--EEL-----TRRTDARPGSDPRWDSMFNMVL--HEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMK 294 (726)
Q Consensus 230 DPyV~v~~--g~~-----~rTt~i~~t~nP~WnEtf~~~v--~~~--~~~L~~~V~D~d~~~~~dd~lG~~~i~L~ 294 (726)
|=||++.+ |.. .+|+.+.-+..+.|||...|.+ .+. +..|.|.|||.+.. .+...+|.+.++|=
T Consensus 31 ~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-~~~~~vg~~~~~lF 105 (159)
T cd08397 31 DLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-GKAVPFGGTTLSLF 105 (159)
T ss_pred CEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-CCceEEEEEEEeeE
Confidence 67888877 322 2444455566789999988885 344 67999999999864 46679999999883
No 265
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.07 E-value=0.63 Score=44.86 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=58.3
Q ss_pred ccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--ccE-----Eeeeec--C--CCCCCc
Q 004872 185 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL-----TRRTDA--R--PGSDPR 253 (726)
Q Consensus 185 ~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g~~-----~rTt~i--~--~t~nP~ 253 (726)
...+.|+|.++.+++....... .|=||++.+ |.. ..|+.. . -...+.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~----------------------~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~ 64 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSF----------------------EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVV 64 (171)
T ss_pred cccEEEEEEEeecCChHHhhcc----------------------ccEEEEEEEEECCEECcCceeccccccccCcccccc
Confidence 3568899999999987642111 156888877 422 122221 1 123578
Q ss_pred ccceeEEEE--ecC--CceEEEEEEEeCCCCC---------CcceeEEEEEecee
Q 004872 254 WDSMFNMVL--HEE--TGTVRFNLYECIPGHV---------KYDYLTSCEVKMKY 295 (726)
Q Consensus 254 WnEtf~~~v--~~~--~~~L~~~V~D~d~~~~---------~dd~lG~~~i~L~~ 295 (726)
|||...|.+ .+. +..|.|.||+.... . .+..||.+.++|=+
T Consensus 65 Wnewl~F~i~i~~LPrearL~itl~~~~~~-~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 65 WDEWIEFPIPVCQLPRESRLVLTLYGTTSS-PDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred ccceEECccchhcCChhHEEEEEEEEEecC-CccccccccccceEEEEEeEeeEc
Confidence 999988875 343 67999999998754 2 34689999988843
No 266
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.77 E-value=0.34 Score=49.59 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=58.6
Q ss_pred ccccEEEEEEEeecCCCCCCC-CCCCcccccccCCCCccccccCCCCcCcEEEEEEccEEeeeecCCC--CCCcccceeE
Q 004872 183 AVGGIVYVRVISASKLSRSSL-RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPG--SDPRWDSMFN 259 (726)
Q Consensus 183 ~~~GvL~V~v~~A~~L~~~~~-~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~~rTt~i~~t--~nP~WnEtf~ 259 (726)
...|+|.+++..+|+|+-... .|. ..+-||+++..++.++++.-.+ ..=.|.|+|.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kgl---------------------t~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~ 106 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGL---------------------TVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFK 106 (442)
T ss_pred cccceEEEEEecccccccChhccCc---------------------eeeeeeeeeecccCccccccccCCCCccchhhce
Confidence 356999999999999986542 121 1377999999877665554444 4456999999
Q ss_pred EEEecCCceEEEEEEEeCCCCCCcc--eeE
Q 004872 260 MVLHEETGTVRFNLYECIPGHVKYD--YLT 287 (726)
Q Consensus 260 ~~v~~~~~~L~~~V~D~d~~~~~dd--~lG 287 (726)
..+.+ .+.+.+-||.|+.. .++. ..|
T Consensus 107 ~Dvv~-~~vl~~lvySW~pq-~RHKLC~~g 134 (442)
T KOG1452|consen 107 HDVVN-IEVLHYLVYSWPPQ-RRHKLCHLG 134 (442)
T ss_pred eeccc-ceeeeEEEeecCch-hhccccccc
Confidence 87643 46789999999976 4454 355
No 267
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.77 E-value=1.6 Score=42.19 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=44.2
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEE--CCeE---EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECC
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK---KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHN 578 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~---~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~d 578 (726)
..++|.|..+. .+..+......-||++.+ |++. .+|....-+.+|.|||-+.|++. ...|.|+||+..
T Consensus 10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 35677777776 333332323345666544 4432 25655555678999999999973 678999999874
No 268
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.57 E-value=2.1 Score=36.09 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=56.7
Q ss_pred CccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872 531 SDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608 (726)
Q Consensus 531 ~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 608 (726)
++-.+.+.+.+. ..+|.-.. ..+..|++.|.+..+ +..|+|+||-+|. ...-|-..+.|.+... ..-++|
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRsRELEI~VywrD~---RslCav~~lrLEd~~~----~~~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERSRELEIAVYWRDW---RSLCAVKFLKLEDERH----EVQLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeecccEEEEEEEEecc---hhhhhheeeEhhhhcc----cceecc
Confidence 567777888764 44554433 357899999999986 6899999998875 2355666777777322 233334
Q ss_pred CCCCCeEEEEEEEE
Q 004872 609 QGVRKGEIHVLITR 622 (726)
Q Consensus 609 ~~~~~G~i~l~l~~ 622 (726)
.+.|.+...++|
T Consensus 81 --epqg~l~~ev~f 92 (98)
T cd08687 81 --EPQLCLVAELTF 92 (98)
T ss_pred --ccccEEEEEEEe
Confidence 357888888877
No 269
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=90.34 E-value=2.5 Score=41.12 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=41.9
Q ss_pred EEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCCCCc-ceeEEEEEece
Q 004872 240 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY-DYLTSCEVKMK 294 (726)
Q Consensus 240 ~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~~~d-d~lG~~~i~L~ 294 (726)
..+|.+...+.+|.|+|++-+.+... ...|.|.+++......++ ..+|.+.+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 46788889999999999999987543 558999998865431122 57999998883
No 270
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.01 E-value=2.5 Score=35.67 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=59.3
Q ss_pred CCcEEEEEEC-CeEeeccccCCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEEEEEEccccccCCeeeeeeecc
Q 004872 400 CDPYVKLQYG-KIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLE 478 (726)
Q Consensus 400 ~dpyv~v~lg-~~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 478 (726)
.+..|.+.++ +.+.+|.-....+..|++.|.+. .+....|+|.||=+|. ..+-|...+.|++... ..-.+|.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~-LdRsRELEI~VywrD~--RslCav~~lrLEd~~~----~~~~~le 81 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLE-LERSRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQLDME 81 (98)
T ss_pred cceEEEEEEcCeEEeeccccccccccccceeEEE-eecccEEEEEEEEecc--hhhhhheeeEhhhhcc----cceeccc
Confidence 5678888885 46888887755789999999998 4556679999987764 4567778888888433 2334444
Q ss_pred ccccceeEEEEEE
Q 004872 479 KVNTGELRLQIEA 491 (726)
Q Consensus 479 ~~~~G~I~l~~~~ 491 (726)
+ +|.+...+.|
T Consensus 82 p--qg~l~~ev~f 92 (98)
T cd08687 82 P--QLCLVAELTF 92 (98)
T ss_pred c--ccEEEEEEEe
Confidence 3 5777766655
No 271
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=89.30 E-value=0.65 Score=47.58 Aligned_cols=115 Identities=15% Similarity=0.036 Sum_probs=80.1
Q ss_pred CCceEEEEEEEEeecCcccc--cCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC
Q 004872 507 SGNGWIELVIVEARDLVAAD--LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA 582 (726)
Q Consensus 507 ~~~g~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~ 582 (726)
...|.|.++++.+++|.-.. .+-+.|-||.+....+ +.+|.+......-.|.|+|...+. ...+.+-||.|+.-.+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~vl~~lvySW~pq~R 127 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIEVLHYLVYSWPPQRR 127 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccceeeeEEEeecCchhh
Confidence 45699999999999996443 3556799999999775 668888877778889999999875 6788999999887555
Q ss_pred CCeeEEEEEEccccCCCCceeeEEecCCCCCeEEEEEEEE
Q 004872 583 SSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 622 (726)
Q Consensus 583 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 622 (726)
+++--.-.+.+..+.. +..++-+.|.=.++|++.+.+-+
T Consensus 128 HKLC~~g~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 128 HKLCHLGLLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred ccccccchhhhhhhhh-cCCcceeeeecccCCCCceeccc
Confidence 5432222333333322 22334445555567877777766
No 272
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.29 E-value=2.8 Score=38.99 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=46.1
Q ss_pred EeEeeeCC-CCCeeeeEEEEec------CCCeEEEEEEECCCCCCC----CeeEEEEEEccccCCCCceeeEEecCCCCC
Q 004872 545 RTKVIFKT-LNPQWHQTLEFPD------DGSPLTLHVRDHNALLAS----SSIGDCVVEYQRLPPNQMADKWIPLQGVRK 613 (726)
Q Consensus 545 kT~v~~~t-~nP~wne~~~f~v------~~~~l~i~V~d~d~~~~d----~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~ 613 (726)
.|....-+ .++.|||.+.|++ .+..|.|+||+.+..... ..||.+.++|-+.... - ..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-L----------~~ 91 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-L----------RQ 91 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-B----------EE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-c----------cC
Confidence 56656655 7999999999996 267899999988775554 6999999998866321 0 24
Q ss_pred eEEEEEE
Q 004872 614 GEIHVLI 620 (726)
Q Consensus 614 G~i~l~l 620 (726)
|...+.+
T Consensus 92 G~~~L~l 98 (142)
T PF00792_consen 92 GPQKLSL 98 (142)
T ss_dssp EEEEEE-
T ss_pred CCEEEEE
Confidence 7777777
No 273
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.46 E-value=2 Score=41.94 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred EEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCCCCc---ceeEEEEEece
Q 004872 240 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY---DYLTSCEVKMK 294 (726)
Q Consensus 240 ~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~~~d---d~lG~~~i~L~ 294 (726)
.++|.+...+.+|.|+|++-+.+... ...|.|.+++......+| ..+|.+.+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 47888889999999999999887543 558999999875431233 47899988883
No 274
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.97 E-value=1.7 Score=40.34 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=42.9
Q ss_pred EEEEEE--cc-----EE-eeeecCCC-CCCcccceeEEEE--ecC--CceEEEEEEEeCCCCCCc----ceeEEEEEece
Q 004872 232 FVEIEL--EE-----LT-RRTDARPG-SDPRWDSMFNMVL--HEE--TGTVRFNLYECIPGHVKY----DYLTSCEVKMK 294 (726)
Q Consensus 232 yV~v~~--g~-----~~-rTt~i~~t-~nP~WnEtf~~~v--~~~--~~~L~~~V~D~d~~~~~d----d~lG~~~i~L~ 294 (726)
||++.+ |. .. .|..+.-+ .+|.|||...|.+ .+. +..|.|.||+.+.. ... ..||.+.++|=
T Consensus 5 ~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-~~~~~~~~~lgw~n~~lF 83 (142)
T PF00792_consen 5 YVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-KKSKKKKVPLGWVNLPLF 83 (142)
T ss_dssp EEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-TTT--EEEEEEEEEEESB
T ss_pred EEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-CccccceeEEEEEEEEeE
Confidence 666666 42 12 34334444 7999999888885 344 67999999998865 333 69999999984
Q ss_pred e
Q 004872 295 Y 295 (726)
Q Consensus 295 ~ 295 (726)
+
T Consensus 84 d 84 (142)
T PF00792_consen 84 D 84 (142)
T ss_dssp -
T ss_pred C
Confidence 3
No 275
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=87.59 E-value=3.2 Score=40.07 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=62.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---eecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecC
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV---QRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEI 449 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~~~---~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~ 449 (726)
.++|+|+.+.++. .+......-||++.+ |++. .+|... -+.++.|||...|.+.- ....|.|.||+...
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 5888888887442 222333456777655 6552 356666 66789999999888543 26789999998632
Q ss_pred C-----------------CCcceEEEEEEccccccCCeeeeeeeccccccceeEEEEEEE
Q 004872 450 F-----------------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 492 (726)
Q Consensus 450 ~-----------------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~~ 492 (726)
. .+..||.+.+.|-+... .| .+|+..+.+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~--------~L---r~G~~~L~~W~~ 138 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF--------LL---RTGEYVLHMWQI 138 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC--------ce---ecCCEEEEEecC
Confidence 1 13456666666655321 11 257777777543
No 276
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=87.10 E-value=3 Score=36.68 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=48.3
Q ss_pred EEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC----------CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCC--
Q 004872 534 YVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ-- 600 (726)
Q Consensus 534 yv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~----------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~-- 600 (726)
||.+.+-. +...|.++. ..+|.+|-+..|.|. ...+.|+++..-. ...+.+|.+.+++..+.+..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCc
Confidence 45555544 556676666 789999998888873 5789999987653 33679999999999885332
Q ss_pred ceeeEEecC---CCCCeEEEEEEEEEec
Q 004872 601 MADKWIPLQ---GVRKGEIHVLITRKVP 625 (726)
Q Consensus 601 ~~~~w~~L~---~~~~G~i~l~l~~~~p 625 (726)
....-..|. +..-|.|.+.++++.|
T Consensus 80 ~i~~~~~l~g~~~~~~g~l~y~~rl~~P 107 (107)
T PF11618_consen 80 RIHGSATLVGVSGEDFGTLEYWIRLRVP 107 (107)
T ss_dssp -EEEEEEE-BSSS-TSEEEEEEEEEEE-
T ss_pred eEEEEEEEeccCCCeEEEEEEEEEecCC
Confidence 233444553 3445888888887554
No 277
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=86.03 E-value=1.8 Score=42.26 Aligned_cols=56 Identities=9% Similarity=0.085 Sum_probs=35.0
Q ss_pred EEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCCCCc--ceeEEEEEecee
Q 004872 240 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY--DYLTSCEVKMKY 295 (726)
Q Consensus 240 ~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~~~d--d~lG~~~i~L~~ 295 (726)
...|.+..++.+|.|+|+|-+.+... ...|.|.+|+......++ ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 36777788899999999999988654 568999999987542233 699999999966
No 278
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.83 E-value=5 Score=34.81 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=46.1
Q ss_pred EEEEEEEeecCcccccCCCCccEEEEEE--CCeE----EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCC
Q 004872 512 IELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA 579 (726)
Q Consensus 512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~d~ 579 (726)
+.+.+..+++.........+|-||++.+ |++. ..|+.+.-...+.|||-+.|++. ...|.|++|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5566777776655433333588888866 5543 35554444556999999999873 5789999998653
No 279
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=84.17 E-value=8.6 Score=37.44 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=38.9
Q ss_pred Eeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC--C-CcceEEEEEEcc
Q 004872 412 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF--G-DENMGSARVNLE 463 (726)
Q Consensus 412 ~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~--~-d~~iG~~~i~L~ 463 (726)
.++|.+. ++.+|.|+|++.+.+... ...|.|++++.... + ...+|-+.++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 6788888 999999999999987653 67888988875443 1 245676666663
No 280
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=83.57 E-value=7.7 Score=34.14 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=37.2
Q ss_pred EEEEEE-CCeEeeccccCCCCCceeeEEEEEeeCC--------ceeEEEEEEeecCCCCcceEEEEEEccccccCC
Q 004872 403 YVKLQY-GKIVQRTRTAHSPNHVWNQKFELDEIGG--------GECLMVKCYNEEIFGDENMGSARVNLEGLVEGS 469 (726)
Q Consensus 403 yv~v~l-g~~~~kT~~~~t~nP~wne~f~f~v~~~--------~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~ 469 (726)
||.+.+ +-+.+.|.++.+.+|.+|-+-.|.+..+ ...+.++++.........+|.+.+++.++.++.
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCC
Confidence 566666 4567777777888999999988887654 468999999877546679999999999998544
No 281
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=82.14 E-value=12 Score=36.51 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=39.6
Q ss_pred Eeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC--CC---cceEEEEEEcc
Q 004872 412 VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF--GD---ENMGSARVNLE 463 (726)
Q Consensus 412 ~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~--~d---~~iG~~~i~L~ 463 (726)
.++|.+. ++.+|.|+|++.+.+.. ....|.|.+++.... +| ..+|-+.++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 7888888 99999999999998765 377899999886533 22 45777666664
No 282
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=81.46 E-value=19 Score=35.01 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=42.2
Q ss_pred EEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCC-C-------CcceeEEEEEecee
Q 004872 240 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGH-V-------KYDYLTSCEVKMKY 295 (726)
Q Consensus 240 ~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~-~-------~dd~lG~~~i~L~~ 295 (726)
...|.+...+.+|.|+|++-+.+.-. ...|.|..|+.+-.. . ....+|.+-+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 46788888889999999999887543 558999999976210 1 13579999998844
No 283
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=81.38 E-value=4.9 Score=38.54 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=53.4
Q ss_pred CCCcEEEEEEC-CeEeecccc---CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEEEEEEccccc
Q 004872 399 KCDPYVKLQYG-KIVQRTRTA---HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLV 466 (726)
Q Consensus 399 ~~dpyv~v~lg-~~~~kT~~~---~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~ 466 (726)
...-|+++.++ +++.+|+.. ....-.|++.|.+.+...-..|.++||......+..|+.+.+++-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 34568999994 557777766 333456689999998877788999999988778899999999987654
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=78.07 E-value=7.4 Score=37.88 Aligned_cols=69 Identities=12% Similarity=0.222 Sum_probs=40.3
Q ss_pred EEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCC---CeeEEEEEEccccCCCCceeeEEecCCCCCe
Q 004872 543 KKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLAS---SSIGDCVVEYQRLPPNQMADKWIPLQGVRKG 614 (726)
Q Consensus 543 ~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d---~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G 614 (726)
...|.+...+.+|.|+|+|-+.++ +..|.|++++...-.+. ..+|.+.+||-+ . +.. ...|
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~-g~~---------i~dg 128 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-N-GTI---------IQDG 128 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--T-S-B-----------SE
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee-C-CeE---------ecCC
Confidence 567888888999999999999874 56799999987643211 689999999987 3 221 2347
Q ss_pred EEEEEEEE
Q 004872 615 EIHVLITR 622 (726)
Q Consensus 615 ~i~l~l~~ 622 (726)
+..+.+..
T Consensus 129 ~~~L~v~~ 136 (184)
T PF14429_consen 129 EHELPVYK 136 (184)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77766653
No 285
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=77.86 E-value=15 Score=38.59 Aligned_cols=105 Identities=13% Similarity=0.197 Sum_probs=75.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCC-CC-ceeeEEEEEeeCCceeEEEEEEeecCCCCcceE
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSP-NH-VWNQKFELDEIGGGECLMVKCYNEEIFGDENMG 456 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~-nP-~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG 456 (726)
.|-|.|++..++.. ....|+.+..|+...+|..+ -+. +- .-.+.....+..-+..|++.+|-..-.+...||
T Consensus 59 ~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIg 133 (508)
T PTZ00447 59 YLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIG 133 (508)
T ss_pred eEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEE
Confidence 57888888777643 35679999999999999777 322 22 224444555555577899999988776888999
Q ss_pred EEEEEccc-cccCC-eeeeeeeccccc--cceeEEEE
Q 004872 457 SARVNLEG-LVEGS-VRDIWVPLEKVN--TGELRLQI 489 (726)
Q Consensus 457 ~~~i~L~~-l~~~~-~~~~w~~L~~~~--~G~I~l~~ 489 (726)
.+.+.+.. +..+. +...||.+...+ .++|.||+
T Consensus 134 dI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 134 QIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred EEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 99999876 44444 678999997543 46666666
No 286
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=76.45 E-value=13 Score=32.10 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=45.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeec
Q 004872 381 INVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV----QRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 448 (726)
Q Consensus 381 L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~~~----~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~ 448 (726)
+.+.+..+.+.........++-||++.+ |++. ..|+.+ ....+.|||...|.+.- ....|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5667777776654332223578888866 6543 356555 56679999999987532 2778999999864
No 287
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=76.36 E-value=11 Score=36.05 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=51.1
Q ss_pred CcEEEEEEc--cEEeeeec--CCCCCCcccceeEEEEecCCceEEEEEEEeCCCCCCcceeEEEEEeceecc
Q 004872 230 TTFVEIELE--ELTRRTDA--RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 297 (726)
Q Consensus 230 DPyV~v~~g--~~~rTt~i--~~t~nP~WnEtf~~~v~~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~ 297 (726)
.=|++|.++ .+.+|+.. ..+..=.+||.|.+.+...-+.|.++||.... ..+.+|+++.+|+-...
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG--LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC--ccceEEEEEEeeCCCCc
Confidence 348889886 34555543 34455678999999998889999999999885 57889999999985443
No 288
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=72.92 E-value=7.5 Score=37.63 Aligned_cols=53 Identities=8% Similarity=0.100 Sum_probs=38.9
Q ss_pred eeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCC----CCcceeEEEEEecee
Q 004872 243 RTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGH----VKYDYLTSCEVKMKY 295 (726)
Q Consensus 243 Tt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~----~~dd~lG~~~i~L~~ 295 (726)
++++....+|.|+|+|-+.+... ...|.|.+|+.+... .....+|.+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444449999999999887543 568999999987431 124589999999843
No 289
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=70.20 E-value=13 Score=36.00 Aligned_cols=56 Identities=7% Similarity=0.028 Sum_probs=42.6
Q ss_pred cEEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCCC-----CcceeEEEEEece
Q 004872 239 ELTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHV-----KYDYLTSCEVKMK 294 (726)
Q Consensus 239 ~~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~~-----~dd~lG~~~i~L~ 294 (726)
....|.+...+.+|.|+|++-+.+... ...|.|+.|+.+-... ....+|.+-+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 346788888999999999999887654 4589999999664311 1246999998884
No 290
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.81 E-value=8.1 Score=44.41 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=93.3
Q ss_pred CCCCcEEEEEECC-eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceEEEEEEccccccC-Ceeee
Q 004872 398 GKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGSARVNLEGLVEG-SVRDI 473 (726)
Q Consensus 398 g~~dpyv~v~lg~-~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG~~~i~L~~l~~~-~~~~~ 473 (726)
...+||+.|.+.. +...+.+. .+..|.|+++|...+ .....+.|.|+..... .+.....+++..+++... .....
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v-~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEV-VAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeee-ecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 3467888888843 33455556 899999999999994 4455678888877533 233333333333333322 23457
Q ss_pred eeeccccccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCC
Q 004872 474 WVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTL 553 (726)
Q Consensus 474 w~~L~~~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~ 553 (726)
|..++. .|++...+.+........ . -.+...+. .+......|..+--=...+.+.++.....++-.
T Consensus 105 w~~~~~--~g~~~~~~~~~~~~~~~~-~----------~~~~~~~~-~~~~~~rrga~~~~kVhei~gH~F~aT~l~Qpt 170 (694)
T KOG0694|consen 105 WVLIEE--LGTLLKPAALTGTLEPGR-T----------KSVFSPEP-FFSKPRRRGAISQSKVHEIDGHKFGATSLRQPT 170 (694)
T ss_pred cccccc--ccceeeeecccCcCCcCc-c----------ccccccCc-cccCcccccccccceeEEeeCcEEEEeeccCcc
Confidence 877664 588888877663222111 0 00000000 111000111111111155666665555555666
Q ss_pred CCeeeeEEEEecCCCeEEEEEEECCC
Q 004872 554 NPQWHQTLEFPDDGSPLTLHVRDHNA 579 (726)
Q Consensus 554 nP~wne~~~f~v~~~~l~i~V~d~d~ 579 (726)
.-.|...|...+..+.+.++++..+-
T Consensus 171 ~Cs~C~kFi~gL~kqGyQCqvC~~vv 196 (694)
T KOG0694|consen 171 FCSWCQKFIWGLRKQGYQCQVCWRVV 196 (694)
T ss_pred hhhhhhhheeccCCCceEEeeeeehH
Confidence 77899999999866788888886654
No 291
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=61.79 E-value=23 Score=34.21 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=37.9
Q ss_pred EEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCC-----CCCCeeEEEEEEccc
Q 004872 543 KKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNAL-----LASSSIGDCVVEYQR 595 (726)
Q Consensus 543 ~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~-----~~d~~lG~~~i~l~~ 595 (726)
.++|-+..+ .+|.|+|+|-+.++ ...|.|++++...- .....+|.+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444444 89999999998874 57799999986632 235678888888775
No 292
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=60.45 E-value=31 Score=33.37 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=40.5
Q ss_pred eEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCC------CCeeEEEEEEccc
Q 004872 542 LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLA------SSSIGDCVVEYQR 595 (726)
Q Consensus 542 ~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~------d~~lG~~~i~l~~ 595 (726)
....|.|...+.+|.|+|++-..++ ...|.|+.++.+--.+ ...+|.+.+||-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4567889999999999999998874 5689999997543211 2458888888764
No 293
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=56.48 E-value=45 Score=32.45 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=40.4
Q ss_pred eEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCC--C-------CCCeeEEEEEEccc
Q 004872 542 LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNAL--L-------ASSSIGDCVVEYQR 595 (726)
Q Consensus 542 ~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~--~-------~d~~lG~~~i~l~~ 595 (726)
....|.|...+.+|.|+|++-+.++ ...|.|+.++.+-- . ....+|.+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4667889999999999999998874 56899999986521 1 13457877777754
No 294
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=55.21 E-value=11 Score=44.32 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=55.4
Q ss_pred ccccccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCC
Q 004872 179 LRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDP 252 (726)
Q Consensus 179 ~~~~~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP 252 (726)
......-|.+.+.+++|..|+... .-||+..+. ....|.++.+|..|
T Consensus 752 ~eSpl~ygflh~~vhsat~lkqs~---------------------------~lY~Td~v~e~~~~~s~~st~~iadT~~~ 804 (1112)
T KOG4269|consen 752 DESPLLYGFLHVIVHSATGLKQSR---------------------------NLYCTDEVDEFGYFVSKASTRVIADTAEP 804 (1112)
T ss_pred ccCcccccceeeeecccccccccc---------------------------ceeeehhhhhhccccccccceeeecccCC
Confidence 344456699999999999998643 337777774 23678889999999
Q ss_pred cccceeEEEEecCCceEEEEEEEeCC
Q 004872 253 RWDSMFNMVLHEETGTVRFNLYECIP 278 (726)
Q Consensus 253 ~WnEtf~~~v~~~~~~L~~~V~D~d~ 278 (726)
.||+.|++.+. ..|.+++..++.+.
T Consensus 805 ~~npe~hv~~~-~sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 805 QWNPEKHVPVI-ESQSSRLEKTEKST 829 (1112)
T ss_pred CCChhcccchh-hccccchhhhcccc
Confidence 99999998873 35777888888764
No 295
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=50.33 E-value=20 Score=42.67 Aligned_cols=80 Identities=18% Similarity=0.320 Sum_probs=66.1
Q ss_pred CCccEEEEEECCe-EEEeEeeeCC-CCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeE
Q 004872 530 TSDPYVKVQYGDL-KKRTKVIFKT-LNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW 605 (726)
Q Consensus 530 ~~DPyv~v~~~~~-~~kT~v~~~t-~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w 605 (726)
+.++|+++.+... -.+|....+. .+|.|.+.|..... ...+.+.+-+.+..+....+|.+.++...+..+.....|
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~ 216 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGW 216 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccce
Confidence 3699999999775 4477777776 78999999877763 577888988888777677999999999999888889999
Q ss_pred EecC
Q 004872 606 IPLQ 609 (726)
Q Consensus 606 ~~L~ 609 (726)
+++.
T Consensus 217 ~~Il 220 (887)
T KOG1329|consen 217 FPIL 220 (887)
T ss_pred eeee
Confidence 9985
No 296
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=48.79 E-value=20 Score=42.63 Aligned_cols=97 Identities=14% Similarity=0.300 Sum_probs=75.1
Q ss_pred CCCcEEEEEECC-eEeecccc-CC-CCCceeeEEEEEeeCCceeEEEEEEeecCCC-CcceEEEEEEccccccCCeeeee
Q 004872 399 KCDPYVKLQYGK-IVQRTRTA-HS-PNHVWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 474 (726)
Q Consensus 399 ~~dpyv~v~lg~-~~~kT~~~-~t-~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~-d~~iG~~~i~L~~l~~~~~~~~w 474 (726)
..++|+.+.+.. ...+|... +. .+|.|.+.|+.........+.+.+-+.+..+ ...+|.+.++...+..+.....|
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~ 216 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGW 216 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccce
Confidence 468999999954 46677777 55 7899999999888888888999998887765 78999999999999988877788
Q ss_pred eeccccc-----c-ceeEEEEEEEEec
Q 004872 475 VPLEKVN-----T-GELRLQIEATRVD 495 (726)
Q Consensus 475 ~~L~~~~-----~-G~I~l~~~~~~~~ 495 (726)
+++.... . -.+.+++.+.+.+
T Consensus 217 ~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 217 FPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred eeeeccCCccccCCcccceEEeeEeec
Confidence 8876421 2 2344556666543
No 297
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=46.74 E-value=1.9e+02 Score=31.58 Aligned_cols=93 Identities=13% Similarity=0.261 Sum_probs=58.0
Q ss_pred CCccEEEEEECCeEEEeEeeeC----CCCC-eee-e--EEEEec--------C------CCeEEEEEEECCC-----C-C
Q 004872 530 TSDPYVKVQYGDLKKRTKVIFK----TLNP-QWH-Q--TLEFPD--------D------GSPLTLHVRDHNA-----L-L 581 (726)
Q Consensus 530 ~~DPyv~v~~~~~~~kT~v~~~----t~nP-~wn-e--~~~f~v--------~------~~~l~i~V~d~d~-----~-~ 581 (726)
.+..||+|.+.+-..+|..+.= ..+| .-+ - .|++.- . ...|+|.||.-.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 4577999999887666655431 1121 211 2 344431 1 2579999998553 2 4
Q ss_pred CCCeeEEEEEEcccc-CCC---CceeeEEecCCCC-------CeEEEEEEEE
Q 004872 582 ASSSIGDCVVEYQRL-PPN---QMADKWIPLQGVR-------KGEIHVLITR 622 (726)
Q Consensus 582 ~d~~lG~~~i~l~~l-~~~---~~~~~w~~L~~~~-------~G~i~l~l~~ 622 (726)
...+||.+.|+|+-- ..+ ..+..|+.+.... ..+||+.+..
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~ 166 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRA 166 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEec
Confidence 567999999998722 122 2467899996432 4688888876
No 298
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=40.91 E-value=4.8 Score=45.33 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=81.1
Q ss_pred EEEEEEEEeecCCCCC----CCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCCCC
Q 004872 380 KINVTVVEGKDLMPKD----KSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIFGD 452 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d----~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~~d 452 (726)
+...+++.|.+++..- ..-..++++...++++.++|+.. .+.+|.|||. ++...+- ...+ ..
T Consensus 281 i~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l----------~~ 349 (975)
T KOG2419|consen 281 IALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYL----------GN 349 (975)
T ss_pred hHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHH----------hh
Confidence 4445555666553210 11246789999999999999999 9999999997 4443221 1222 44
Q ss_pred cceEEEEEEccccccC----CeeeeeeeccccccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccc--
Q 004872 453 ENMGSARVNLEGLVEG----SVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-- 526 (726)
Q Consensus 453 ~~iG~~~i~L~~l~~~----~~~~~w~~L~~~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-- 526 (726)
.++|.+.+++.+-... .....++..++ . ...+.+.+..-...++++..
T Consensus 350 kiv~~~~~~lndS~A~f~vq~~~sn~~~~~p-E-------------------------~~~~sfnl~~~a~sn~~a~r~~ 403 (975)
T KOG2419|consen 350 KIVGYCELDLNDSYANFVVQRAKSNFFISEP-E-------------------------STCKSFNLLDPASSNLPALRNR 403 (975)
T ss_pred hccccccccccchhhhhhhhhhhccccccCc-c-------------------------ccceEEEeecCCcccchhhhhc
Confidence 5666666666652211 11111111111 1 11222222222233333211
Q ss_pred ---cCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEe
Q 004872 527 ---LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP 564 (726)
Q Consensus 527 ---~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~ 564 (726)
.+-..||+..+.+|..-.++.+-....+|.+++.-.+.
T Consensus 404 ~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s 444 (975)
T KOG2419|consen 404 LSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILS 444 (975)
T ss_pred cCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhccc
Confidence 24467999988888776666666667777776644443
No 299
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.84 E-value=26 Score=40.53 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=37.4
Q ss_pred cCcEEEEEEcc--EEeeeecCCCCCCcccceeEEEEecCCceEEEEEEEeCC
Q 004872 229 LTTFVEIELEE--LTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIP 278 (726)
Q Consensus 229 ~DPyV~v~~g~--~~rTt~i~~t~nP~WnEtf~~~v~~~~~~L~~~V~D~d~ 278 (726)
.|||+.|.+.. ...+.+...+.+|.|+|+|...+. ....+.+.||....
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~ 78 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSP 78 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCC
Confidence 48899998863 345555788999999999999963 35678888887653
No 300
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=33.83 E-value=75 Score=36.63 Aligned_cols=161 Identities=16% Similarity=0.216 Sum_probs=95.6
Q ss_pred CcccceEEEeEEeeCCCCcccceeeeEeC-C------------------CCCE-----EEEEEeEEecCCchhhhhhhhh
Q 004872 29 PRLIEKIELQEFSLGSTSPCLGLHGTRWS-S------------------SGDQ-----RVMQLGFDWDANDISILLLAKL 84 (726)
Q Consensus 29 P~~i~~~~~~~f~lG~~pp~i~~v~~~~~-~------------------~~d~-----~~~d~~~~~~~~~~~~~~~~~~ 84 (726)
-..+..+.+.+.-||.+=|.+.+.+++-- + .-|. +.+=++.+|.+++....-.-
T Consensus 143 g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~-- 220 (1051)
T KOG3532|consen 143 GRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVS-- 220 (1051)
T ss_pred hhhhcccceehhhhccccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCc--
Confidence 56689999999999999999999998850 0 0111 22334566777664321000
Q ss_pred cCCccc-eeEEEEEeeEEEeEEEEeeeec-eeEEEEEeecCceEEE--EeeecCCCCCccCCccCCCHHHHHHHHHHHhh
Q 004872 85 AKPLLG-TAKIVINSLHIKGDLLVMPILE-GKAVLYSFVSIPDVRI--GVAFGSGGSQSLPATELPGVSNWLARLINETL 160 (726)
Q Consensus 85 ~~~~~g-~~~i~v~~~~~~G~~rv~~~p~-~~~v~~sf~~~P~v~~--~~~~g~~~~~~~~i~~iPgl~~~~~~~i~~~l 160 (726)
-..+ ..-+.|+-.+..|-+|+.-+-- -..=+++|++.|.+.- ..-+-++-.++ -|.+.|...|..++
T Consensus 221 --s~~~kk~S~~iKl~~l~Gm~r~~~~r~py~hw~~sf~G~P~~e~di~s~~qg~qLQ~-------~I~q~i~~~ir~~~ 291 (1051)
T KOG3532|consen 221 --TIIAKKASLSVKITKLTGMVRVILSRQPYHHWTFSFVGQPIFETDINSQIQGHQLQR-------LIPQIIKEAIRRSL 291 (1051)
T ss_pred --cccccCCceeEEEEEeccceeEEEEeccceeeeeeeccCchhhhhhHHHHHHHHHHH-------HhHHHHHHHHHHHH
Confidence 0112 2356677788999999972210 1234789999999754 22222221221 24556666666666
Q ss_pred hccccCCceeeecC-cccc-----------c-cccccccEEEEEEEeecCCCCC
Q 004872 161 VKTLVEPRRRCYSL-PAVD-----------L-RKKAVGGIVYVRVISASKLSRS 201 (726)
Q Consensus 161 ~~~~v~P~~~~~~l-~~~~-----------~-~~~~~~GvL~V~v~~A~~L~~~ 201 (726)
..-=-||++- +.+ |... + ..-...|.+.|++.++..|...
T Consensus 292 ~rKhT~pnyK-~ry~pff~~~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~ 344 (1051)
T KOG3532|consen 292 QRKHTWPNYK-IRYRPFFPNPIFQASPPINSFTHIKMEGGIEVTVLECSRLKDK 344 (1051)
T ss_pred HhhccCcchh-hhccccccCcccccCcchhhhhheeccCceeEeehhhhhhhcc
Confidence 6666788741 111 1111 0 1112569999999999888754
No 301
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=33.13 E-value=4.3e+02 Score=25.09 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=50.3
Q ss_pred EEEEeecCcccccCCCCccEEEEEE--C--------Ce-EEEeEeeeCC-----CCCeeeeEEEEec--C----CCeEEE
Q 004872 515 VIVEARDLVAADLRGTSDPYVKVQY--G--------DL-KKRTKVIFKT-----LNPQWHQTLEFPD--D----GSPLTL 572 (726)
Q Consensus 515 ~v~~a~~L~~~d~~g~~DPyv~v~~--~--------~~-~~kT~v~~~t-----~nP~wne~~~f~v--~----~~~l~i 572 (726)
.|..|.+.. ..+-||+-.+ + .. ...|++...+ -.-.||.-|.+.. . -+.|.|
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 556676543 3466888776 2 23 4566666432 3467887666654 1 278999
Q ss_pred EEEECCCCCCCCeeEEEEEEcc
Q 004872 573 HVRDHNALLASSSIGDCVVEYQ 594 (726)
Q Consensus 573 ~V~d~d~~~~d~~lG~~~i~l~ 594 (726)
+||..|.++++...|...+.|-
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999988777653
No 302
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=29.66 E-value=6.6e+02 Score=26.85 Aligned_cols=109 Identities=10% Similarity=0.111 Sum_probs=72.5
Q ss_pred CCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCC--eeeeEEEEecC--CCeEEEEEEECCCCCC
Q 004872 507 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNP--QWHQTLEFPDD--GSPLTLHVRDHNALLA 582 (726)
Q Consensus 507 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP--~wne~~~f~v~--~~~l~i~V~d~d~~~~ 582 (726)
...-.|-|.|.+-.++.. ...-|+.+..|....+|..+.-+..- .-.+.....+. +.+|.+.+|-... .+
T Consensus 55 HRkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vk 128 (508)
T PTZ00447 55 YRTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TK 128 (508)
T ss_pred cceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cc
Confidence 445667777777766643 34679999999988888655432221 22344555553 6789999998664 45
Q ss_pred CCeeEEEEEEccc--cCCCCceeeEEecC--CCCCeEEEEEEE
Q 004872 583 SSSIGDCVVEYQR--LPPNQMADKWIPLQ--GVRKGEIHVLIT 621 (726)
Q Consensus 583 d~~lG~~~i~l~~--l~~~~~~~~w~~L~--~~~~G~i~l~l~ 621 (726)
..-||.+.+.++. +...-+..+||-+. |...+.|.+++.
T Consensus 129 k~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 129 KVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred eeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEeh
Confidence 6789999998763 34455778999995 444576666663
No 303
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=29.45 E-value=3.8e+02 Score=24.83 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=52.0
Q ss_pred CCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEec---------------CCCeEEEEEEECCCCCCCCeeEEEEEE
Q 004872 528 RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD---------------DGSPLTLHVRDHNALLASSSIGDCVVE 592 (726)
Q Consensus 528 ~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v---------------~~~~l~i~V~d~d~~~~d~~lG~~~i~ 592 (726)
....|-|..|++.++.++|+-.....==.++|.|.|.- ....+.++++....-. ...|+...-.
T Consensus 17 ~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~n 95 (140)
T PF14909_consen 17 CDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEEN 95 (140)
T ss_pred CCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEecc
Confidence 34569999999999999998776655556789999872 3678999998866544 5677777777
Q ss_pred ccccC
Q 004872 593 YQRLP 597 (726)
Q Consensus 593 l~~l~ 597 (726)
+.++.
T Consensus 96 ~rDfL 100 (140)
T PF14909_consen 96 TRDFL 100 (140)
T ss_pred ccceE
Confidence 76663
No 304
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=28.52 E-value=4.3e+02 Score=26.61 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=27.0
Q ss_pred eeEEEEEeeEEEeEEEEeeee-------ceeEEEEEe-ecCceEEE
Q 004872 91 TAKIVINSLHIKGDLLVMPIL-------EGKAVLYSF-VSIPDVRI 128 (726)
Q Consensus 91 ~~~i~v~~~~~~G~~rv~~~p-------~~~~v~~sf-~~~P~v~~ 128 (726)
.+-+.++++.+.+++++.... .+..+++.| ++..++++
T Consensus 145 ~~~~~l~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~~~~~~~~~ 190 (248)
T PF06585_consen 145 DFNITLENVRATGTIKGEVYKKNGKTYLRITNFKIDFDLGNVKFDL 190 (248)
T ss_dssp EEEEEEEEEEEEEEEEEEEEEETS-EEEEEEEEEEEEEECEEEEEE
T ss_pred eEEEEeeeEEEEEEEEEEEeecCCccEEEEEEEEEEEEeceEEEEe
Confidence 889999999999999998433 455555555 35555555
No 305
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=27.68 E-value=4.5e+02 Score=23.60 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=51.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEe-ecccc-CCCCCce-eeEEEEEeeC--C-ceeEEEEEEeecC--CC
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQ-RTRTA-HSPNHVW-NQKFELDEIG--G-GECLMVKCYNEEI--FG 451 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~-kT~~~-~t~nP~w-ne~f~f~v~~--~-~~~l~i~V~d~~~--~~ 451 (726)
.|.++-+.-..++..+..+.+.||++|+-++... .|... ... ... ...+.+.... . ..-+.|++|+.+. ..
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDP-KSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCC-CEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceecc-ccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 4555555556777666677899999999976544 44443 221 121 1222333221 1 4568899998873 36
Q ss_pred CcceEEEEEEccccc
Q 004872 452 DENMGSARVNLEGLV 466 (726)
Q Consensus 452 d~~iG~~~i~L~~l~ 466 (726)
++.+.++.+.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 677888888776665
No 306
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=27.68 E-value=8.6e+02 Score=26.84 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=48.3
Q ss_pred CCcEEEEEECCeEeecccc---CCCCCce------eeEEEEEeeC------C------ceeEEEEEEeecCC-------C
Q 004872 400 CDPYVKLQYGKIVQRTRTA---HSPNHVW------NQKFELDEIG------G------GECLMVKCYNEEIF-------G 451 (726)
Q Consensus 400 ~dpyv~v~lg~~~~kT~~~---~t~nP~w------ne~f~f~v~~------~------~~~l~i~V~d~~~~-------~ 451 (726)
+..||+|.+.+-..+|..+ ...++.- -..|.+...+ + ...|+|.||.-... .
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 4669999997766666655 3222221 2334443111 1 25799999985542 4
Q ss_pred CcceEEEEEEcccccc-C-C--eeeeeeecccc
Q 004872 452 DENMGSARVNLEGLVE-G-S--VRDIWVPLEKV 480 (726)
Q Consensus 452 d~~iG~~~i~L~~l~~-~-~--~~~~w~~L~~~ 480 (726)
..+||.+.++|+---. + + -+..|..+.+.
T Consensus 116 ~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~ 148 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKN 148 (460)
T ss_pred ceEEEEEEEEeccccccCCeeEEEccceecCCC
Confidence 5799999999873211 1 1 35678877654
No 307
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=26.71 E-value=1e+02 Score=36.79 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=42.8
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc----c--E---EeeeecCCCCCCcccc
Q 004872 186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----E--L---TRRTDARPGSDPRWDS 256 (726)
Q Consensus 186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g----~--~---~rTt~i~~t~nP~WnE 256 (726)
--++|+++++.++.-... .|-+|.|+.| . + ..|+.+..+.+|.||+
T Consensus 343 ~~frI~l~~is~~n~~~t-------------------------~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~ 397 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLPET-------------------------VDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNE 397 (1076)
T ss_pred CceEEEEeeccccCCCcc-------------------------cceEEEEEEEEEECCeehhcccccCCCCCccchhccc
Confidence 368899998887643221 1456666664 2 1 2233344588999999
Q ss_pred eeEEEEe--cC--CceEEEEEEEe
Q 004872 257 MFNMVLH--EE--TGTVRFNLYEC 276 (726)
Q Consensus 257 tf~~~v~--~~--~~~L~~~V~D~ 276 (726)
..+|.+. |. ...|.|.||--
T Consensus 398 ~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 398 WLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred eeEeeeecCCCChhhhheeeeeEe
Confidence 8887754 54 56899999865
No 308
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=25.60 E-value=4.7e+02 Score=23.52 Aligned_cols=87 Identities=8% Similarity=0.082 Sum_probs=50.2
Q ss_pred eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEE-eEeeeCCCCCeee-eEEEEecC-----CCeEEEEEEECCC-CC
Q 004872 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR-TKVIFKTLNPQWH-QTLEFPDD-----GSPLTLHVRDHNA-LL 581 (726)
Q Consensus 510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~k-T~v~~~t~nP~wn-e~~~f~v~-----~~~l~i~V~d~d~-~~ 581 (726)
..|.++=+.-+..|.-+.++.+.||++|+-++.... |...... ..... +.+.+... ...+.|.+++.+. ..
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~ 82 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSM 82 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTEC
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCccc
Confidence 345555555567776666778899999999887652 2222111 11111 12222221 5678899998773 34
Q ss_pred CCCeeEEEEEEccccC
Q 004872 582 ASSSIGDCVVEYQRLP 597 (726)
Q Consensus 582 ~d~~lG~~~i~l~~l~ 597 (726)
.++.+.++.+.-.-+.
T Consensus 83 ~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 83 SKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCEEEEEEEEEGGGSB
T ss_pred ccCeEEEEEEeeeeee
Confidence 4667777777655444
No 309
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=22.60 E-value=1.7e+02 Score=33.49 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=67.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCceeeEEEEEeeCCceeEEEEEEeecCC----CCcce
Q 004872 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIF----GDENM 455 (726)
Q Consensus 380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~----~d~~i 455 (726)
.+.|.|.+..+|.....+ .=.||...+.+.+.+|.......|.|...=.|....+...+++++|..... .|.-+
T Consensus 342 smevvvmevqglksvapn--rivyctmevegeklqtdqaeaskp~wgtqgdfstthplpvvkvklftestgvlaledkel 419 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPN--RIVYCTMEVEGEKLQTDQAEASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKEL 419 (1218)
T ss_pred eeeEEEeeeccccccCCC--eeEEEEEEecccccccchhhhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhh
Confidence 477888999999765322 346999999888888877766679998877777666677788888887654 67888
Q ss_pred EEEEEEccccccCCeeeeeeecc
Q 004872 456 GSARVNLEGLVEGSVRDIWVPLE 478 (726)
Q Consensus 456 G~~~i~L~~l~~~~~~~~w~~L~ 478 (726)
|++.+.-.. .......|+.+.
T Consensus 420 grvil~ptp--ns~ks~ewh~mt 440 (1218)
T KOG3543|consen 420 GRVILQPTP--NSAKSPEWHTMT 440 (1218)
T ss_pred CeEEEecCC--CCcCCccceeee
Confidence 988775433 122345677664
No 310
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=22.53 E-value=1.1e+02 Score=33.70 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=28.6
Q ss_pred eeEEEEEEccc-cCCCCceeeEEecCCC-----CCeEEEEEEEE
Q 004872 585 SIGDCVVEYQR-LPPNQMADKWIPLQGV-----RKGEIHVLITR 622 (726)
Q Consensus 585 ~lG~~~i~l~~-l~~~~~~~~w~~L~~~-----~~G~i~l~l~~ 622 (726)
.+|.+.|++.. +..+...+.||++.+. ..|.+ +++.|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~ 43 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSS 43 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEe
Confidence 48999999999 6777889999999642 23666 67766
No 311
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=22.14 E-value=2.8e+02 Score=25.70 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=48.5
Q ss_pred CcEEEEEE-ccEEeeeecCCCCCCcccceeEEE-----Eec-------C-CceEEEEEEEeCCCCCCcceeEEEEEecee
Q 004872 230 TTFVEIEL-EELTRRTDARPGSDPRWDSMFNMV-----LHE-------E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 295 (726)
Q Consensus 230 DPyV~v~~-g~~~rTt~i~~t~nP~WnEtf~~~-----v~~-------~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~ 295 (726)
|-|..|++ |...+|.-.....==.++|.|.|. +.| . .+.++++++.+... ....|+..+-++++
T Consensus 21 ~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~--~g~iLA~ye~n~rD 98 (140)
T PF14909_consen 21 DVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPP--AGEILAYYEENTRD 98 (140)
T ss_pred CEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCC--CCcEEEEEeccccc
Confidence 66888888 788888765544433468998887 112 1 67899999998864 37789999888887
Q ss_pred cc
Q 004872 296 VA 297 (726)
Q Consensus 296 l~ 297 (726)
+.
T Consensus 99 fL 100 (140)
T PF14909_consen 99 FL 100 (140)
T ss_pred eE
Confidence 66
No 312
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=21.44 E-value=17 Score=41.26 Aligned_cols=69 Identities=16% Similarity=0.067 Sum_probs=45.6
Q ss_pred EEEEEEEEeecCcccc----cCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCCC
Q 004872 511 WIELVIVEARDLVAAD----LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNAL 580 (726)
Q Consensus 511 ~L~v~v~~a~~L~~~d----~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~d~d~~ 580 (726)
..-++++.|.+++..- ..-..++++...++.+..+|+.-..+.+|+|||. .|.+. +..|...+.+++..
T Consensus 281 i~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~ 357 (975)
T KOG2419|consen 281 IALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCEL 357 (975)
T ss_pred hHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccccc
Confidence 3334556666654211 1235689999999999999999999999999997 55542 23344444444443
Done!