Query 004873
Match_columns 726
No_of_seqs 433 out of 2241
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:26:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmq_A Heat shock protein HSP 99.9 3.7E-25 1.3E-29 226.9 7.3 173 234-417 18-220 (239)
2 3peh_A Endoplasmin homolog; st 99.9 8.5E-25 2.9E-29 228.6 9.7 171 236-417 27-229 (281)
3 3ied_A Heat shock protein; HSP 99.9 5.9E-24 2E-28 219.3 8.2 124 287-416 126-269 (272)
4 1qy5_A Endoplasmin; GRP94, NEC 99.9 1.9E-23 6.6E-28 217.7 6.8 164 242-417 16-214 (269)
5 3t0h_A Heat shock protein HSP 99.9 6.4E-23 2.2E-27 209.2 7.1 172 234-416 11-212 (228)
6 2gqp_A Endoplasmin; GRP94, HSP 99.9 1.2E-22 4.1E-27 207.9 9.0 169 236-416 13-217 (236)
7 3o0i_A HSP90AA1 protein; HSP90 99.9 9.6E-23 3.3E-27 210.9 7.5 173 234-417 39-241 (256)
8 1yc1_A HSP 86, heat shock prot 99.9 7E-22 2.4E-26 205.5 9.7 165 241-416 55-248 (264)
9 2wer_A ATP-dependent molecular 99.9 8.4E-22 2.9E-26 199.0 10.0 169 237-416 8-207 (220)
10 1y4s_A Chaperone protein HTPG; 99.9 1.1E-21 3.8E-26 222.2 11.6 173 235-416 7-210 (559)
11 2cg9_A ATP-dependent molecular 99.8 2.1E-21 7.2E-26 223.5 13.1 171 236-417 7-208 (677)
12 2ioq_A Chaperone protein HTPG; 99.8 2.4E-21 8.2E-26 221.9 7.8 171 237-416 9-210 (624)
13 2ior_A Chaperone protein HTPG; 99.8 4.1E-21 1.4E-25 196.2 8.2 166 242-416 35-230 (235)
14 2o1u_A Endoplasmin; GRP94, HSP 99.8 3.5E-21 1.2E-25 221.5 6.8 161 244-416 35-230 (666)
15 2e61_A Zinc finger CW-type PWW 99.7 4.7E-17 1.6E-21 137.3 5.2 54 610-663 10-67 (69)
16 2l7p_A Histone-lysine N-methyl 99.6 1.8E-16 6E-21 142.3 0.4 57 610-666 20-79 (100)
17 1b63_A MUTL; DNA mismatch repa 99.5 9.1E-14 3.1E-18 148.5 11.9 141 234-387 3-150 (333)
18 3h4l_A DNA mismatch repair pro 99.4 2.2E-13 7.4E-18 147.7 7.9 139 236-387 6-150 (367)
19 1h7s_A PMS1 protein homolog 2; 99.4 1E-12 3.5E-17 142.3 9.1 140 236-387 15-160 (365)
20 3na3_A DNA mismatch repair pro 99.3 3.1E-12 1.1E-16 137.9 7.8 139 236-387 9-154 (348)
21 3fv5_A DNA topoisomerase 4 sub 98.8 5.6E-09 1.9E-13 104.5 7.5 120 255-388 18-155 (201)
22 1s16_A Topoisomerase IV subuni 98.5 1.8E-07 6.2E-12 102.2 9.1 119 256-388 33-169 (390)
23 4duh_A DNA gyrase subunit B; s 98.5 3.3E-07 1.1E-11 93.0 10.2 120 254-389 35-172 (220)
24 4emv_A DNA topoisomerase IV, B 98.5 2.4E-07 8.3E-12 94.4 8.4 142 232-389 20-179 (226)
25 1ei1_A DNA gyrase B, GYRB; ATP 98.5 3.1E-07 1.1E-11 100.4 9.5 120 254-388 34-170 (391)
26 1mu5_A Type II DNA topoisomera 98.4 5.6E-07 1.9E-11 100.5 10.9 133 254-390 32-179 (471)
27 2zbk_B Type 2 DNA topoisomeras 98.4 9E-07 3.1E-11 100.2 10.4 133 254-390 31-178 (530)
28 1kij_A DNA gyrase subunit B; t 98.3 5.3E-07 1.8E-11 98.5 6.4 120 255-388 33-170 (390)
29 1zxm_A TOPO IIA ATPase, DNA to 98.3 1.1E-06 3.8E-11 96.4 8.3 125 254-389 52-194 (400)
30 3cwv_A DNA gyrase, B subunit, 98.3 6.9E-07 2.4E-11 97.0 6.2 119 254-388 30-159 (369)
31 2q2e_B Type 2 DNA topoisomeras 98.2 2E-06 7E-11 99.0 7.5 131 254-389 37-181 (621)
32 3lnu_A Topoisomerase IV subuni 98.1 4E-06 1.4E-10 92.2 8.9 120 256-389 52-189 (408)
33 1pvg_A DNA topoisomerase II; G 97.8 2.1E-05 7.2E-10 86.7 7.6 124 255-390 65-208 (418)
34 3ttz_A DNA gyrase subunit B; p 97.8 3.3E-05 1.1E-09 77.1 6.9 107 255-389 32-145 (198)
35 1id0_A PHOQ histidine kinase; 97.6 7.1E-05 2.4E-09 68.2 6.9 85 255-350 45-132 (152)
36 1bxd_A ENVZ(290-450), protein 97.5 0.0001 3.6E-09 68.1 5.4 87 255-350 48-137 (161)
37 2c2a_A Sensor histidine kinase 97.3 0.00018 6.1E-09 71.5 5.4 89 255-350 139-235 (258)
38 2q8g_A [pyruvate dehydrogenase 97.3 0.00019 6.5E-09 77.6 5.8 90 255-350 244-350 (407)
39 3a0y_A Sensor protein; ATP-LID 97.2 0.0002 6.8E-09 64.8 4.4 82 255-349 48-135 (152)
40 4ew8_A Sensor protein DIVL; si 97.2 0.0004 1.4E-08 69.0 6.7 83 255-350 156-243 (268)
41 2btz_A Pyruvate dehydrogenase 97.2 0.00023 8E-09 76.4 5.0 90 255-350 232-337 (394)
42 2e0a_A Pyruvate dehydrogenase 97.2 0.00026 8.7E-09 76.3 5.2 90 255-350 231-337 (394)
43 1th8_A Anti-sigma F factor; SP 97.2 0.00035 1.2E-08 63.8 5.4 82 255-350 40-126 (145)
44 1ysr_A Sensor-type histidine k 97.2 0.00056 1.9E-08 62.3 6.7 86 255-350 47-136 (150)
45 1i58_A Chemotaxis protein CHEA 97.2 0.00013 4.5E-09 69.4 2.3 47 255-307 48-108 (189)
46 3jz3_A Sensor protein QSEC; he 97.1 0.00021 7.1E-09 68.5 3.6 84 255-350 118-204 (222)
47 1y8o_A [pyruvate dehydrogenase 97.1 0.00026 8.8E-09 77.0 4.6 90 255-350 254-361 (419)
48 1gkz_A [3-methyl-2-oxobutanoat 97.1 0.00018 6.3E-09 77.0 2.9 90 255-350 239-360 (388)
49 3d36_A Sporulation kinase B; G 97.0 0.00062 2.1E-08 66.2 6.0 84 255-350 124-212 (244)
50 1r62_A Nitrogen regulation pro 97.0 0.00016 5.4E-09 65.9 1.2 89 255-350 49-147 (160)
51 3sl2_A Sensor histidine kinase 96.9 0.00066 2.3E-08 63.8 4.8 92 255-351 44-140 (177)
52 1b3q_A Protein (chemotaxis pro 96.8 0.00092 3.2E-08 72.0 5.4 89 255-351 107-236 (379)
53 3ehh_A Sensor kinase (YOCF pro 96.6 0.0011 3.6E-08 64.0 3.9 71 255-350 131-205 (218)
54 3a0r_A Sensor protein; four he 96.6 0.0012 4.1E-08 67.7 4.1 82 255-349 245-332 (349)
55 3zxo_A Redox sensor histidine 96.4 0.0031 1E-07 55.9 4.9 69 254-351 43-115 (129)
56 3ehg_A Sensor kinase (YOCF pro 96.4 0.002 6.8E-08 57.7 3.5 47 255-307 41-88 (128)
57 3zxq_A Hypoxia sensor histidin 95.9 0.0052 1.8E-07 54.1 4.0 45 255-306 40-85 (124)
58 4gfh_A DNA topoisomerase 2; to 95.7 0.027 9.2E-07 69.3 10.3 122 257-389 62-202 (1177)
59 4gut_A Lysine-specific histone 92.6 0.016 5.4E-07 68.5 -1.1 45 616-660 91-145 (776)
60 4fpp_A Phosphotransferase; fou 92.5 0.085 2.9E-06 52.8 4.2 82 255-349 147-235 (247)
61 1we9_A PHD finger family prote 91.2 0.086 2.9E-06 42.9 2.1 34 614-647 18-54 (64)
62 3o70_A PHD finger protein 13; 90.7 0.13 4.5E-06 42.8 2.8 32 615-646 30-62 (68)
63 3o7a_A PHD finger protein 13 v 89.5 0.15 5E-06 40.1 2.0 32 615-646 15-47 (52)
64 2lv9_A Histone-lysine N-methyl 86.6 0.36 1.2E-05 42.8 2.9 33 615-647 39-72 (98)
65 1wee_A PHD finger family prote 86.5 0.43 1.5E-05 39.8 3.1 31 616-646 29-61 (72)
66 3ke6_A Protein RV1364C/MT1410; 83.7 0.83 2.8E-05 49.3 4.6 47 254-305 297-348 (399)
67 1wep_A PHF8; structural genomi 83.2 0.2 6.9E-06 42.6 -0.4 33 614-646 23-58 (79)
68 1ixm_A SPO0B, protein (sporula 79.2 0.82 2.8E-05 45.1 2.3 48 259-312 110-167 (192)
69 2ri7_A Nucleosome-remodeling f 76.2 0.49 1.7E-05 45.4 -0.3 34 614-647 19-55 (174)
70 3kqi_A GRC5, PHD finger protei 76.1 0.67 2.3E-05 39.0 0.6 33 614-646 21-56 (75)
71 2kgg_A Histone demethylase jar 75.6 1.1 3.6E-05 35.2 1.6 35 612-646 12-49 (52)
72 2vpb_A Hpygo1, pygopus homolog 74.2 1.1 3.7E-05 37.0 1.4 16 612-627 18-34 (65)
73 2xb1_A Pygopus homolog 2, B-ce 68.0 1.2 4E-05 40.1 0.2 18 612-629 13-31 (105)
74 1wew_A DNA-binding family prot 67.3 1.7 5.7E-05 36.8 1.1 33 614-646 26-67 (78)
75 2k16_A Transcription initiatio 66.9 1.7 5.7E-05 36.2 1.0 32 615-646 30-63 (75)
76 2rsd_A E3 SUMO-protein ligase 62.6 4.4 0.00015 33.3 2.7 32 615-646 21-60 (68)
77 3pur_A Lysine-specific demethy 60.4 3.4 0.00012 46.8 2.2 37 611-647 51-90 (528)
78 1wem_A Death associated transc 59.3 2.9 9.9E-05 35.0 1.1 32 615-646 27-65 (76)
79 1weu_A Inhibitor of growth fam 55.9 5.2 0.00018 35.2 2.1 31 615-646 46-80 (91)
80 1wen_A Inhibitor of growth fam 52.8 7.3 0.00025 32.5 2.5 31 615-646 26-60 (71)
81 3kv5_D JMJC domain-containing 51.5 2.6 8.8E-05 47.4 -0.7 34 614-647 48-84 (488)
82 3lqh_A Histone-lysine N-methyl 47.0 6.5 0.00022 38.6 1.5 15 616-630 19-33 (183)
83 2g6q_A Inhibitor of growth pro 46.2 7.3 0.00025 31.7 1.4 30 616-646 22-55 (62)
84 3c6w_A P28ING5, inhibitor of g 45.8 7.5 0.00026 31.2 1.4 30 616-646 20-53 (59)
85 1ow1_A Smart/HDAC1 associated 44.2 12 0.0004 37.4 2.8 29 88-116 128-163 (195)
86 2jmi_A Protein YNG1, ING1 homo 40.0 14 0.00049 32.3 2.4 30 616-646 37-70 (90)
87 2vnf_A ING 4, P29ING4, inhibit 36.3 13 0.00044 29.9 1.4 31 615-646 20-54 (60)
88 2kvo_A Photosystem II reaction 34.4 9.5 0.00033 35.2 0.4 16 83-98 86-101 (120)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 29.9 12 0.0004 33.2 0.2 11 618-628 2-12 (140)
90 3uq8_A DNA ligase; adenylated 28.5 22 0.00076 37.9 2.0 22 546-567 115-141 (322)
91 1ta8_A DNA ligase, NAD-depende 27.8 23 0.00079 37.9 2.0 22 546-567 121-147 (332)
92 3jsl_A DNA ligase; NAD+-depend 25.5 27 0.00092 37.2 2.0 22 546-567 113-139 (318)
93 1b04_A Protein (DNA ligase); D 25.3 23 0.00079 37.7 1.4 22 546-567 115-141 (318)
94 1x4i_A Inhibitor of growth pro 25.0 15 0.00052 30.5 -0.0 31 615-646 16-50 (70)
No 1
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.91 E-value=3.7e-25 Score=226.93 Aligned_cols=173 Identities=21% Similarity=0.280 Sum_probs=133.9
Q ss_pred cceeecC-HHHHHHhcccccCCHHHHHHHHHHcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEE
Q 004873 234 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII 296 (726)
Q Consensus 234 ~~~~~v~-p~~L~slstsh~~~~f~AIaELIDNA~DA~At----------------~I~I~I~~~~~~~~~~~~~~L~I~ 296 (726)
...|+++ ...|+.++.+.|++...+|||||+||.||.++ .+.|.|.. +.+...|+|.
T Consensus 18 ~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~ 91 (239)
T 3nmq_A 18 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLV 91 (239)
T ss_dssp EEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred eEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEE
Confidence 3446665 46677778777877778899999999999652 35666653 3456899999
Q ss_pred eCCCCCCHHHHHHhhh-cccCCC--------CCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCC
Q 004873 297 DDGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (726)
Q Consensus 297 DNG~GMt~eeL~~~l~-fG~S~k--------~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~ 367 (726)
|||+||++++|.++|+ ++.|.+ ...+...|||||+||||++| +|++|+|.||+.+. .++.|.+ .+.
T Consensus 92 DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~ 166 (239)
T 3nmq_A 92 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAG 166 (239)
T ss_dssp ECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CST
T ss_pred eCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCC
Confidence 9999999999977664 444321 12357899999999999876 99999999999764 5788988 555
Q ss_pred ccEEEcCcc--cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHHh
Q 004873 368 DNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 368 ~~viVP~~~--~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e~ 417 (726)
..++|...+ ...+||+|+||++++. ++++++.++. |.|||.|+.+||...
T Consensus 167 g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~ 220 (239)
T 3nmq_A 167 GSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLY 220 (239)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEEC
T ss_pred CcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEe
Confidence 678775443 2368999999999864 7888999876 999999999998753
No 2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.91 E-value=8.5e-25 Score=228.60 Aligned_cols=171 Identities=23% Similarity=0.326 Sum_probs=132.8
Q ss_pred eeecC-HHHHHHhcccccCCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeC
Q 004873 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (726)
Q Consensus 236 ~~~v~-p~~L~slstsh~~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DN 298 (726)
.|+++ ...|..++.+.|++...+|||||+||+||.+ ..+.|.|.. +.+..+|+|.||
T Consensus 27 ~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~DN 100 (281)
T 3peh_A 27 QYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSITDT 100 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEEeC
Confidence 45555 3455666777777777889999999999974 346666653 345689999999
Q ss_pred CCCCCHHHHHHhhh-cccCCCC---------CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCc
Q 004873 299 GHGMTHQDVVRMTY-FGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 368 (726)
Q Consensus 299 G~GMt~eeL~~~l~-fG~S~k~---------~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~ 368 (726)
|+||++++|.++|+ +++|.+. ..+...|||||+|||||+| +|++|+|.||+.+. .++.|.+ .+..
T Consensus 101 GiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes--~g~g 175 (281)
T 3peh_A 101 GIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWES--TADA 175 (281)
T ss_dssp SCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--ETTS
T ss_pred CCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEE--CCCc
Confidence 99999999988775 5554311 2457899999999999877 99999999999874 5888987 4556
Q ss_pred cEEEcCcc---cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHHh
Q 004873 369 NLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 369 ~viVP~~~---~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e~ 417 (726)
.+.|...+ ...+||.|+|+++++. ++++++.++. |.|||.|+.+||...
T Consensus 176 ~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~ 229 (281)
T 3peh_A 176 KFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLL 229 (281)
T ss_dssp CEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEE
T ss_pred cEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEe
Confidence 77664432 3468999999999864 7889999876 999999999998754
No 3
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=5.9e-24 Score=219.28 Aligned_cols=124 Identities=26% Similarity=0.396 Sum_probs=100.2
Q ss_pred CCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCC--------C-CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcc
Q 004873 287 GKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSI 356 (726)
Q Consensus 287 ~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k--------~-~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~ 356 (726)
+++..+|+|.|||+||++++|.++|+ +++|.+ . ..+...|||||+|||||+| +|++|+|.|| .+ ..
T Consensus 126 Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm-VAdkV~V~Sk-~d--d~ 201 (272)
T 3ied_A 126 DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL-VSNRVEVYTK-KE--DQ 201 (272)
T ss_dssp ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG-TEEEEEEEEE-SS--SC
T ss_pred eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeec-cCCEEEEEEc-CC--Cc
Confidence 44568999999999999999999875 444321 1 1457899999999999877 9999999999 33 46
Q ss_pred eEEEeeecCCCccEEEcCcc--------cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004873 357 AFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 357 g~ls~sf~~g~~~viVP~~~--------~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
++.|.+ ++...++|.... ...+||+|+||++++. +|++++.++. |.|||.|+.+||..
T Consensus 202 ~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys~fi~~PI~l 269 (272)
T 3ied_A 202 IYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSEFIKFPIEI 269 (272)
T ss_dssp EEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCCSCEEE
T ss_pred eEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHHhCCCCCeEE
Confidence 899998 667788775433 3468999999999865 8999999976 99999999999864
No 4
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.88 E-value=1.9e-23 Score=217.73 Aligned_cols=164 Identities=19% Similarity=0.303 Sum_probs=126.7
Q ss_pred HHHHHhcccccCCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004873 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 242 ~~L~slstsh~~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
..|+.++.+.|++...+|+|||+||+||++ ..+.|.|.. +.+...|+|.|||+||+++
T Consensus 16 ~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~l~I~DnGiGMt~e 89 (269)
T 1qy5_A 16 RMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTRE 89 (269)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE------cCCceEEEEEECCCCCCHH
Confidence 455566666666777789999999999976 456676653 3456899999999999999
Q ss_pred HHHHhhh-cccCCC--------C-----CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEE
Q 004873 306 DVVRMTY-FGHKQP--------D-----ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 371 (726)
Q Consensus 306 eL~~~l~-fG~S~k--------~-----~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~vi 371 (726)
+|.++|+ +|+|.+ . ..+...||+||+||||++| +|++|+|+||+.+. .++.|.+ .+ +.+.
T Consensus 90 dl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~g-g~~~ 163 (269)
T 1qy5_A 90 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFS 163 (269)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CS-SCEE
T ss_pred HHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--eC-CEEE
Confidence 9988774 555521 0 0356799999999998877 99999999999875 5788876 45 5676
Q ss_pred EcCcc---cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHHh
Q 004873 372 IPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 372 VP~~~---~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e~ 417 (726)
|.... -..+||.|+|+++.+. +++..+.++. |.+||.|.++||...
T Consensus 164 i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~ 214 (269)
T 1qy5_A 164 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVW 214 (269)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEE
T ss_pred EEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEe
Confidence 64332 2468999999998754 6788888876 899999999998743
No 5
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.87 E-value=6.4e-23 Score=209.20 Aligned_cols=172 Identities=23% Similarity=0.294 Sum_probs=132.8
Q ss_pred cceeecC-HHHHHHhcccccCCHHHHHHHHHHcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEE
Q 004873 234 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII 296 (726)
Q Consensus 234 ~~~~~v~-p~~L~slstsh~~~~f~AIaELIDNA~DA~At----------------~I~I~I~~~~~~~~~~~~~~L~I~ 296 (726)
...|+++ ...|..++.+.|+.+..+|+|||+||+||+++ .+.|.|.. +.+...|+|.
T Consensus 11 ~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~------d~~~~~i~V~ 84 (228)
T 3t0h_A 11 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIV 84 (228)
T ss_dssp EEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred ceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE------eCCeeEEEEE
Confidence 4456666 36667778788888888899999999999863 56676653 3457899999
Q ss_pred eCCCCCCHHHHHHhhh-cccCCCC--------CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCC
Q 004873 297 DDGHGMTHQDVVRMTY-FGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (726)
Q Consensus 297 DNG~GMt~eeL~~~l~-fG~S~k~--------~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~ 367 (726)
|||.||++++|..+|. +++|.+. ..+...||+||+||+|+++ ++++|+|.||+.+. .|+.|.+ .+.
T Consensus 85 DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~~--~~~~w~~--~g~ 159 (228)
T 3t0h_A 85 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAG 159 (228)
T ss_dssp ECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CST
T ss_pred eCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCCC--CcEEEEE--cCC
Confidence 9999999999987764 5554321 1356899999999998876 99999999999863 5888887 455
Q ss_pred ccEEEcCcc--cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004873 368 DNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 368 ~~viVP~~~--~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
..+.|...+ -..+||.|+++++.+. ++.+.+.++. |.+||.|..+||..
T Consensus 160 ~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~ 212 (228)
T 3t0h_A 160 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 212 (228)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEE
T ss_pred ceEEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEE
Confidence 566664332 3468999999999864 6777778766 99999999998875
No 6
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.87 E-value=1.2e-22 Score=207.87 Aligned_cols=169 Identities=20% Similarity=0.309 Sum_probs=124.6
Q ss_pred eeecC-HHHHHHhcccccCCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeC
Q 004873 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (726)
Q Consensus 236 ~~~v~-p~~L~slstsh~~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DN 298 (726)
.|++. ...++.++.+.|+.+..+|+|||+||+||+| ..+.|.|.. +.+...|+|.||
T Consensus 13 ~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~i~I~Dn 86 (236)
T 2gqp_A 13 AFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDT 86 (236)
T ss_dssp CCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred chhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE------cCCCCEEEEEEC
Confidence 35554 3456666777777888999999999999986 345666542 234579999999
Q ss_pred CCCCCHHHHHHhhh-cccCCCC--------C-----CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeec
Q 004873 299 GHGMTHQDVVRMTY-FGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLN 364 (726)
Q Consensus 299 G~GMt~eeL~~~l~-fG~S~k~--------~-----~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~ 364 (726)
|+||++++|.++|. +|+|.+. . .+...||+||+||++++| +|++|+|.||+.+. .++.|.+
T Consensus 87 G~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~~--~~~~w~~-- 161 (236)
T 2gqp_A 87 GVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES-- 161 (236)
T ss_dssp SCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--
T ss_pred CcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCCC--ceEEEEE--
Confidence 99999999988774 6665321 1 345789999999998766 99999999999875 4788876
Q ss_pred CCCccEEEcCcc---cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004873 365 QGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 365 ~g~~~viVP~~~---~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
++ ..+.+.... -..+||.|+++++.+. ++.+.+.++. |.+||.|..+||..
T Consensus 162 ~g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~ 217 (236)
T 2gqp_A 162 DS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYV 217 (236)
T ss_dssp SS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEE
T ss_pred eC-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEE
Confidence 45 566664332 2357999999998754 6777778765 99999999998875
No 7
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.87 E-value=9.6e-23 Score=210.91 Aligned_cols=173 Identities=23% Similarity=0.279 Sum_probs=132.1
Q ss_pred cceeecCH-HHHHHhcccccCCHHHHHHHHHHcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEE
Q 004873 234 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII 296 (726)
Q Consensus 234 ~~~~~v~p-~~L~slstsh~~~~f~AIaELIDNA~DA~At----------------~I~I~I~~~~~~~~~~~~~~L~I~ 296 (726)
...|+++- ..|..++.+.|++...+|+|||+||+||+++ .+.|.|.. +.+...|+|.
T Consensus 39 ~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~ 112 (256)
T 3o0i_A 39 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIV 112 (256)
T ss_dssp EEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred eEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------cCCceEEEEe
Confidence 34455553 5566667777777778899999999999864 56677653 3467899999
Q ss_pred eCCCCCCHHHHHHhhh-cccCCC--------CCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCC
Q 004873 297 DDGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (726)
Q Consensus 297 DNG~GMt~eeL~~~l~-fG~S~k--------~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~ 367 (726)
|||+||++++|..+|+ +++|.+ ...+...||+||+||+|+++ ++++|+|.||+.+. .|+.|.+ .+.
T Consensus 113 DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~~--~g~~w~s--~gg 187 (256)
T 3o0i_A 113 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAG 187 (256)
T ss_dssp ECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CST
T ss_pred cCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCCC--ceEEEEE--ecc
Confidence 9999999999987764 444322 11357899999999999876 99999999999863 5888987 455
Q ss_pred ccEEEcCc--ccCCCCcEEEEEeccc-hhhhhHhhHHH-HhhhCCCcchhHHHh
Q 004873 368 DNLEIPIV--SYYRKGQFMELDTVVQ-SEATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 368 ~~viVP~~--~~~~~GT~I~l~lk~~-~e~~~~~~L~~-I~kySpF~s~pI~e~ 417 (726)
..+.|... .-..+||+|+++++.+ .++.+.+.++. |.+||.|..+||...
T Consensus 188 ~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~ 241 (256)
T 3o0i_A 188 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 241 (256)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEEC
T ss_pred ceEEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEe
Confidence 56666443 2336899999999976 47878888866 999999999988753
No 8
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.85 E-value=7e-22 Score=205.50 Aligned_cols=165 Identities=23% Similarity=0.299 Sum_probs=128.7
Q ss_pred HHHHHHhcccccCCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCH
Q 004873 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (726)
Q Consensus 241 p~~L~slstsh~~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 304 (726)
...+..++.+.|+++..+|+|||+||+||+| +.+.|.|.. +.+...|+|.|||+||++
T Consensus 55 ~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~------d~~~~~I~I~DnG~GMs~ 128 (264)
T 1yc1_A 55 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTK 128 (264)
T ss_dssp HHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE------ETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE------CCCeeEEEEEECCcCCCH
Confidence 3566777777788899999999999999987 778888763 234679999999999999
Q ss_pred HHHHHhhh-cccCCCC--------CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCc
Q 004873 305 QDVVRMTY-FGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV 375 (726)
Q Consensus 305 eeL~~~l~-fG~S~k~--------~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~ 375 (726)
++|.++|. +++|.+. ..+...||+||+||+++++ ++++|+|.||+.+. .++.|... +...+.+...
T Consensus 129 edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~--~~~~~~i~~~ 203 (264)
T 1yc1_A 129 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGSFTVRTD 203 (264)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEEC--STTEEEEEEC
T ss_pred HHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEc--CCceEEEeec
Confidence 99987764 7766532 2356899999999998877 99999999999874 47888763 3445555332
Q ss_pred c--cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004873 376 S--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 376 ~--~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
. -...||.|+++++.+. ++.+.+.++. |.+||.|..+||..
T Consensus 204 ~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~ 248 (264)
T 1yc1_A 204 TGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 248 (264)
T ss_dssp CSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEE
T ss_pred CCCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEE
Confidence 1 2357999999998754 6667777765 99999999998864
No 9
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.85 E-value=8.4e-22 Score=199.03 Aligned_cols=169 Identities=22% Similarity=0.294 Sum_probs=127.5
Q ss_pred eecC-HHHHHHhcccccCCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCC
Q 004873 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (726)
Q Consensus 237 ~~v~-p~~L~slstsh~~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG 299 (726)
|+++ ...++.++.+.|+++..+|+|||+||+||+| ..+.|.+.. +.+...|+|.|||
T Consensus 8 f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~------~~~~~~i~I~DnG 81 (220)
T 2wer_A 8 FQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDSG 81 (220)
T ss_dssp CCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE------EGGGTEEEEEECS
T ss_pred eeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE------CCCCCEEEEEEcC
Confidence 4444 3466666777777888999999999999987 455666653 2346799999999
Q ss_pred CCCCHHHHHHhhh-cccCCC--------CCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccE
Q 004873 300 HGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (726)
Q Consensus 300 ~GMt~eeL~~~l~-fG~S~k--------~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~v 370 (726)
.||++++|.+++. +|+|.+ ...+...||+||+||+++++ ++++++|.||+.+. .++.|.. .+...+
T Consensus 82 ~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~-~~~~v~v~S~~~~~--~~~~~~~--~~~~~~ 156 (220)
T 2wer_A 82 IGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGGSF 156 (220)
T ss_dssp CCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSSSEE
T ss_pred CCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh-cCCeeEEEEecCCC--ceeEEEe--CCCCce
Confidence 9999999988764 676632 12357899999999997755 99999999999874 4788876 344456
Q ss_pred EEcCcc---cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004873 371 EIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 371 iVP~~~---~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
.+.... -..+||.|+++++.+. ++.+.+.++. |.+|+.|..+||..
T Consensus 157 ~i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~ 207 (220)
T 2wer_A 157 TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (220)
T ss_dssp EEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEE
T ss_pred EeecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEE
Confidence 554322 3357999999998753 6667777766 89999999988864
No 10
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.85 E-value=1.1e-21 Score=222.25 Aligned_cols=173 Identities=21% Similarity=0.290 Sum_probs=133.5
Q ss_pred ceeecCH-HHHHHhcccccCCHHHHHHHHHHcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEe
Q 004873 235 NFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIID 297 (726)
Q Consensus 235 ~~~~v~p-~~L~slstsh~~~~f~AIaELIDNA~DA~----------------At~I~I~I~~~~~~~~~~~~~~L~I~D 297 (726)
..|++.. ..|+.++.+.|+++..+|+|||+||+||+ ++.+.|.|.. +.+...|+|.|
T Consensus 7 ~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~D 80 (559)
T 1y4s_A 7 RGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISD 80 (559)
T ss_dssp EECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE------ETTTTEEEEEE
T ss_pred eeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE------eCCCcEEEEEE
Confidence 3466666 45666677777788888999999999998 5555666552 23357999999
Q ss_pred CCCCCCHHHHHHhhh-cccCCCC----------CCCCCccccccceeeeeeeccCCeEEEEEeeCCC-CcceEEEeeecC
Q 004873 298 DGHGMTHQDVVRMTY-FGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQ 365 (726)
Q Consensus 298 NG~GMt~eeL~~~l~-fG~S~k~----------~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~-~s~g~ls~sf~~ 365 (726)
||+||++++|.++++ +|+|.+. ..+...||+||+||+|++| +|++|+|.||+.+. ...++.|.+ .
T Consensus 81 nGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s--~ 157 (559)
T 1y4s_A 81 NGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--A 157 (559)
T ss_dssp CSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEE--C
T ss_pred CCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEE--e
Confidence 999999999998875 6666432 1356799999999998777 99999999999874 457899987 4
Q ss_pred CCccEEEcCcccCCCCcEEEEEeccc-hhhhhHhhHHH-HhhhCCCcchhHHH
Q 004873 366 GKDNLEIPIVSYYRKGQFMELDTVVQ-SEATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 366 g~~~viVP~~~~~~~GT~I~l~lk~~-~e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
|...+.|...+-..+||.|+++++++ .++++.+.++. |.+||.|..+||..
T Consensus 158 g~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~ 210 (559)
T 1y4s_A 158 GEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEI 210 (559)
T ss_dssp SSSEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEE
T ss_pred CCCeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEE
Confidence 55566665443456899999999875 47787888876 89999999988754
No 11
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.1e-21 Score=223.49 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=132.0
Q ss_pred eeecC-HHHHHHhcccccCCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeC
Q 004873 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (726)
Q Consensus 236 ~~~v~-p~~L~slstsh~~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DN 298 (726)
.|+.. ...|+.++.+.|++...+|+|||+||+||++ ..+.|.|.. +.+..+|+|.||
T Consensus 7 ~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~------d~~~~~I~I~Dn 80 (677)
T 2cg9_A 7 EFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDS 80 (677)
T ss_dssp ECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE------EGGGTEEEEEEC
T ss_pred ehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE------eCCCCEEEEEEC
Confidence 35666 4566767777777777889999999999973 345565542 223579999999
Q ss_pred CCCCCHHHHHHhhh-cccCCC--------CCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCcc
Q 004873 299 GHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (726)
Q Consensus 299 G~GMt~eeL~~~l~-fG~S~k--------~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~ 369 (726)
|+||++++|.++|+ +++|.+ ...+...|||||+|||||+| ++++|+|.||+.+. .++.|.+ .|...
T Consensus 81 GiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~~~~W~s--~g~~~ 155 (677)
T 2cg9_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGGS 155 (677)
T ss_dssp SCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSSSE
T ss_pred CCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--ceEEEEE--cCCce
Confidence 99999999998875 555532 12357899999999998866 99999999999984 4889987 55566
Q ss_pred EEEcCc---ccCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHHh
Q 004873 370 LEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 370 viVP~~---~~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e~ 417 (726)
+.|... .-..+||.|+++++++. +++..+.++. |.+||.|+++||...
T Consensus 156 ~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~ 208 (677)
T 2cg9_A 156 FTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLV 208 (677)
T ss_dssp EEEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEEC
T ss_pred EEEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEe
Confidence 666442 33468999999999754 7888888876 899999999999753
No 12
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.83 E-value=2.4e-21 Score=221.87 Aligned_cols=171 Identities=22% Similarity=0.302 Sum_probs=126.5
Q ss_pred eecCH-HHHHHhcccccCCHHHHHHHHHHcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCC
Q 004873 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (726)
Q Consensus 237 ~~v~p-~~L~slstsh~~~~f~AIaELIDNA~DA~----------------At~I~I~I~~~~~~~~~~~~~~L~I~DNG 299 (726)
|++.. ..|+.++.+.|+++..+|+|||+||+||+ ++.+.|.|.. +.+...|+|.|||
T Consensus 9 Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnG 82 (624)
T 2ioq_A 9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 82 (624)
T ss_dssp ------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE------eCCCcEEEEEECC
Confidence 44443 34566666666777788999999999998 5556666652 2345799999999
Q ss_pred CCCCHHHHHHhhh-cccCCCC----------CCCCCccccccceeeeeeeccCCeEEEEEeeCCC-CcceEEEeeecCCC
Q 004873 300 HGMTHQDVVRMTY-FGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQGK 367 (726)
Q Consensus 300 ~GMt~eeL~~~l~-fG~S~k~----------~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~-~s~g~ls~sf~~g~ 367 (726)
+||+++++.++++ +++|.+. ..+...||+||+||+|++| +|++|+|.||+.+. ...++.|.+ .|.
T Consensus 83 iGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s--~g~ 159 (624)
T 2ioq_A 83 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--AGE 159 (624)
T ss_dssp CCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEE--CSS
T ss_pred CCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEE--eCC
Confidence 9999999988775 6666431 1356899999999998777 99999999999873 457899987 444
Q ss_pred ccEEEcCcccCCCCcEEEEEeccc-hhhhhHhhHHH-HhhhCCCcchhHHH
Q 004873 368 DNLEIPIVSYYRKGQFMELDTVVQ-SEATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 368 ~~viVP~~~~~~~GT~I~l~lk~~-~e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
..+.|...+-..+||.|+++++++ .+++..+.++. |.+||.|..+||..
T Consensus 160 ~~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~ 210 (624)
T 2ioq_A 160 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEI 210 (624)
T ss_dssp SCCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEE
T ss_pred CeEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEE
Confidence 455554333456899999999975 47788888876 89999999998754
No 13
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.83 E-value=4.1e-21 Score=196.23 Aligned_cols=166 Identities=22% Similarity=0.313 Sum_probs=124.0
Q ss_pred HHHHHhcccccCCHHHHHHHHHHcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004873 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 242 ~~L~slstsh~~~~f~AIaELIDNA~DA~----------------At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
..+..++...|+++..||+|||+||+||+ ++.+.|.|.. +.+...|+|.|||.||+++
T Consensus 35 ~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~------~~~~~~i~I~DnG~GMs~e 108 (235)
T 2ior_A 35 QLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNGVGMTRD 108 (235)
T ss_dssp HHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSSCCCHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE------cCCceEEEEEECCCCCCHH
Confidence 34555566666778889999999999998 5556666653 2234689999999999999
Q ss_pred HHHHhh-hcccCCCC----------CCCCCccccccceeeeeeeccCCeEEEEEeeCCCC-cceEEEeeecCCCccEEEc
Q 004873 306 DVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGKDNLEIP 373 (726)
Q Consensus 306 eL~~~l-~fG~S~k~----------~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~-s~g~ls~sf~~g~~~viVP 373 (726)
+|..++ .+|+|.+. ..+...+|+||+||+++ |.++++++|.||+.+.. ..++.|.. ++...+.+.
T Consensus 109 dl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~~~~~~~~w~~--~~~~~~~i~ 185 (235)
T 2ior_A 109 EVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGEKPENGVFWES--AGEGEYTVA 185 (235)
T ss_dssp HHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTSCGGGEEEEEE--CSSSEEEEE
T ss_pred HHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCCCCceeEEEEe--cCCCcEEEe
Confidence 998866 47776431 01357899999999977 45999999999998753 56888877 344455554
Q ss_pred CcccCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004873 374 IVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 374 ~~~~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
...-...||.|+++++++. ++.+.+.++. |.+|+.|..+||..
T Consensus 186 ~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~ 230 (235)
T 2ior_A 186 DITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEI 230 (235)
T ss_dssp EECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEE
T ss_pred eCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEe
Confidence 3334468999999998753 5666677755 99999999988763
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.82 E-value=3.5e-21 Score=221.50 Aligned_cols=161 Identities=20% Similarity=0.322 Sum_probs=112.3
Q ss_pred HHHhcccccCCHHHHHHHHHHcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH
Q 004873 244 LQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (726)
Q Consensus 244 L~slstsh~~~~f~AIaELIDNA~DA~----------------At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL 307 (726)
|+.++.+.|+++..+|+|||+||+||+ +..+.|.|.. +.+..+|+|.|||+||+++++
T Consensus 35 l~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnGiGMt~edl 108 (666)
T 2o1u_A 35 MKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTREEL 108 (666)
T ss_dssp CSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE------ETTTTEEEEEECSCCCCHHHH
T ss_pred HHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE------eCCCCEEEEEECCCCCCHHHH
Confidence 444455566667777999999999997 5556676653 234579999999999999999
Q ss_pred HHhhh-cccCCC--------CC-----CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEc
Q 004873 308 VRMTY-FGHKQP--------DA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP 373 (726)
Q Consensus 308 ~~~l~-fG~S~k--------~~-----~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP 373 (726)
.++|+ +++|.+ .. .+...||+||+||+|++| +|++|+|.||+.+. .++.|.+ +| +.+.|.
T Consensus 109 ~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~~--~~~~W~s--~g-g~~ti~ 182 (666)
T 2o1u_A 109 VKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFSVI 182 (666)
T ss_dssp HHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTTS--CCEEEEE--SS-SCCEEE
T ss_pred HHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCCC--ceEEEEE--eC-CeEEEE
Confidence 98875 455422 11 356799999999998866 99999999999875 4788887 45 556554
Q ss_pred Ccc---cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004873 374 IVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 374 ~~~---~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (726)
... -..+||.|+++++++. ++++.+.++. |.+||.|..+||..
T Consensus 183 ~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~ 230 (666)
T 2o1u_A 183 ADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYV 230 (666)
T ss_dssp ECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEE
T ss_pred ecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEE
Confidence 332 2368999999998754 7777888876 99999999998753
No 15
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.66 E-value=4.7e-17 Score=137.27 Aligned_cols=54 Identities=33% Similarity=0.699 Sum_probs=48.6
Q ss_pred CCCCCCCceEeCC--cchhhccCCCCCCCCCCCCCceecCCCC--CCCCCCCcccccC
Q 004873 610 ALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWFCYMKPF--EGLCDLPEQKVDA 663 (726)
Q Consensus 610 ~~~~~~~~WVQCd--~C~KWR~Lp~~~~~~~lp~~W~C~mnp~--~~sC~~pEe~~~~ 663 (726)
.......+||||| .|+|||+||.++++..+|++|+|+||++ +++|++|||.++.
T Consensus 10 ~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 10 SGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp SSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 3456678999999 9999999999999888999999999996 6999999998864
No 16
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=1.8e-16 Score=142.34 Aligned_cols=57 Identities=19% Similarity=0.554 Sum_probs=49.1
Q ss_pred CCCCCCCceEeCCcchhhccCCCCCC-CCCCCCCceecCCCC--CCCCCCCcccccCCce
Q 004873 610 ALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWFCYMKPF--EGLCDLPEQKVDAGVV 666 (726)
Q Consensus 610 ~~~~~~~~WVQCd~C~KWR~Lp~~~~-~~~lp~~W~C~mnp~--~~sC~~pEe~~~~~~~ 666 (726)
..+.+..+|||||.|+|||+||.++. ...+|++|+|+|||+ +++|++|||.+++++-
T Consensus 20 ~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~ei~ 79 (100)
T 2l7p_A 20 DSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEIN 79 (100)
T ss_dssp SCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHHHH
T ss_pred CCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHHHH
Confidence 34677899999999999999998765 356899999999996 6999999999887654
No 17
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.48 E-value=9.1e-14 Score=148.55 Aligned_cols=141 Identities=19% Similarity=0.264 Sum_probs=102.4
Q ss_pred cceeecCHHHHHHh-cccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh
Q 004873 234 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 234 ~~~~~v~p~~L~sl-stsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
|.+..+++...+.+ |...+..+..||+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++.
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 75 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALALA 75 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHHS
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhhh
Confidence 45788999999999 444557899999999999999999999998862 2357999999999999999999875
Q ss_pred -cccCCCCC----CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCc-cEEEcCcccCCCCcEEEE
Q 004873 313 -FGHKQPDA----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD-NLEIPIVSYYRKGQFMEL 386 (726)
Q Consensus 313 -fG~S~k~~----~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~-~viVP~~~~~~~GT~I~l 386 (726)
|+++.... .....+|.+|+|+.+.++ ++ +++|.||+.+.. .++.+ +.+|.. .+.+ .+.-...||.|++
T Consensus 76 ~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~-vs-~l~v~s~~~~~~-~~~~~--~~~g~~~~~~~-~~~~~~~GT~V~v 149 (333)
T 1b63_A 76 RHATSKIASLDDLEAIISLGFRGEALASISS-VS-RLTLTSRTAEQQ-EAWQA--YAEGRDMNVTV-KPAAHPVGTTLEV 149 (333)
T ss_dssp TTCCSSCCSHHHHHTCCSSCCSSCHHHHHHT-TS-EEEEEEECTTCS-SEEEE--EEETTTTEEEE-EEECCCSEEEEEE
T ss_pred cccccCccccchhhhccccCccccchhhhhc-CC-cEEEEEecCCCc-eEEEE--EEcCCcceEee-ecccCCCCCEEEE
Confidence 55552111 023578999999965433 66 899999998752 34443 434443 2222 1123457999987
Q ss_pred E
Q 004873 387 D 387 (726)
Q Consensus 387 ~ 387 (726)
.
T Consensus 150 ~ 150 (333)
T 1b63_A 150 L 150 (333)
T ss_dssp E
T ss_pred e
Confidence 5
No 18
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.2e-13 Score=147.75 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=93.9
Q ss_pred eeecCHHHHHHh-cccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-c
Q 004873 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (726)
Q Consensus 236 ~~~v~p~~L~sl-stsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (726)
+..+++..++.+ |...+..+..+|.|||+||+||+|+.|.|.+. +.+...|+|.|||.||+++++..++. |
T Consensus 6 I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp -------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceecc
Confidence 567889999999 45556789999999999999999999998885 34567999999999999999988765 3
Q ss_pred ccCC-CCCCC---CCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcccCCCCcEEEEE
Q 004873 314 GHKQ-PDADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (726)
Q Consensus 314 G~S~-k~~~d---~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~~~~GT~I~l~ 387 (726)
.++. ...++ ....|..|.|+.+.+. ++ +++|.||+.+ ..++.|.. ++.+.+..+.+.-...||.|++.
T Consensus 79 ~tsK~~~~~Dl~~i~t~GfrGeaL~Si~a-vS-~l~V~sr~~~--~~~~~~~~--~~~G~~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 79 YTSKIAKFQDVAKVQTLGFRGEALSSLCG-IA-KLSVITTTSP--PKADKLEY--DMVGHITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp EC---------CCCCEEEETTHHHHHHHH-SS-EEEEEEESST--TCEEEEEE--CTTCCEEEEEEECCSSEEEEEEE
T ss_pred ccCcCCchhhhhhhhccCccchHHHHhhc-cC-EEEEEEEECC--CCEEEEEE--cCCCcEEeeccccCCCCeEEEEc
Confidence 3332 22223 3456888999965443 77 6999999987 45666654 22233333333344679999884
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.35 E-value=1e-12 Score=142.33 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=87.8
Q ss_pred eeecCHHHHHHh-cccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-c
Q 004873 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (726)
Q Consensus 236 ~~~v~p~~L~sl-stsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (726)
+..+++...+++ +...+..+..||+|||+||+||+++.|.|.+.. .+...|+|.|||.||+++++..++. |
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~~ 87 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLKH 87 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC--
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhhc
Confidence 677889999998 444557899999999999999999999988862 2457999999999999999998775 5
Q ss_pred ccCCCC-CCCC---CccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcccCCCCcEEEEE
Q 004873 314 GHKQPD-ADDP---NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (726)
Q Consensus 314 G~S~k~-~~d~---~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~~~~~GT~I~l~ 387 (726)
.++... ..+. ...|.+|+|+.+.++ ++ +++|.||+.+. ..++.|.. . +.+.+....+.-...||.|++.
T Consensus 88 ~tsK~~~~~dl~~i~s~G~rG~gl~si~~-vs-~v~v~t~~~~~-~~~~~~~~-~-~~G~~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 88 HTSKIQEFADLTQVETFGFRGEALSSLCA-LS-DVTISTCHASA-KVGTRLMF-D-HNGKIIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp --------CCTTCSEEESSSSSHHHHHHH-HS-EEEEEEECTTC-SSCEEEEE-C-TTSCEEEEEECCCCSEEEEEEE
T ss_pred cccccccccchhcccccCCCCchhhhhhh-hc-cEEEEEccCCC-cceEEEEE-c-CCCceEeecccCCCCCcEEEEe
Confidence 444221 1222 457889999965444 77 99999999875 34555543 2 2223433333334579999885
No 20
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.28 E-value=3.1e-12 Score=137.85 Aligned_cols=139 Identities=20% Similarity=0.310 Sum_probs=96.6
Q ss_pred eeecCHHHHHHh-cccccCCHHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcc
Q 004873 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (726)
Q Consensus 236 ~~~v~p~~L~sl-stsh~~~~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (726)
+..+++...+.+ |...+..+..+|.|||+||+||+|+.|.|.+. ..+...|+|.|||.||+++++..++..+
T Consensus 9 I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~-------~~~~~~I~V~DnG~GI~~~~l~~~~~~~ 81 (348)
T 3na3_A 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVK-------EGGLKLIQIQDNGTGIRKEDLDIVCERF 81 (348)
T ss_dssp CCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------GGGTSEEEEEECSCCCCGGGGGTTTSTT
T ss_pred cccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEE-------eCCEEEEEEEECCcCcChHHhhhhhccc
Confidence 578999999999 45556789999999999999999999999886 2345689999999999999998877533
Q ss_pred cCCC--CCCC---CCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEc-CcccCCCCcEEEEE
Q 004873 315 HKQP--DADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELD 387 (726)
Q Consensus 315 ~S~k--~~~d---~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP-~~~~~~~GT~I~l~ 387 (726)
.+.| ..++ ....|.+|.|+.+.+ .++ +++|.||+.+.. .++.+. |..|. +..+ .+.-...||.|++.
T Consensus 82 ~tsK~~~~~dl~~i~s~GfrGeaL~Si~-avs-~l~v~sr~~~~~-~~~~~~-~~~G~--~~~~~~~~~~~~GTtV~v~ 154 (348)
T 3na3_A 82 TTSKLQSFEDLASISTYGFRGEALASIS-HVA-HVTITTKTADGK-CAYRAS-YSDGK--LKAPPKPCAGNQGTQITVE 154 (348)
T ss_dssp CCSSCCCC---------CCTTCHHHHHH-HSS-EEEEEEECTTCS-SEEEEE-EETTE--ESSCCEEECCCSEEEEEEE
T ss_pred cccccCcchhhhccccCCcCChHHHHhh-ccc-EEEEEEEECCCC-ceEEEE-EeCCE--EeeeeeEecCCCCcEEEEC
Confidence 3323 2222 356799999995444 366 899999998853 455443 22221 1101 11224579999874
No 21
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.80 E-value=5.6e-09 Score=104.47 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=69.1
Q ss_pred HHHHHHHHHHccccc---C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH--------HHhhh-cccCCCCCC
Q 004873 255 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDAD 321 (726)
Q Consensus 255 ~f~AIaELIDNA~DA---~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~~~ 321 (726)
+..++.|||+||+|| + |+.|.|.|. .. ..|+|.|||.||+.+++ .-++. .-.+.|-..
T Consensus 18 ~~~~v~Elv~NsiDa~~~g~a~~I~V~i~-------~~--g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~ 88 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALAGHAKRVDVILH-------AD--QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 88 (201)
T ss_dssp THHHHHHHHHHHHHHHHTTCCSEEEEEEC-------TT--SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEEEe-------CC--CEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCC
Confidence 366799999999999 5 999999875 22 38999999999999874 23232 111222111
Q ss_pred --CCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcC-ccc--CCCCcEEEEEe
Q 004873 322 --DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDT 388 (726)
Q Consensus 322 --d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~-~~~--~~~GT~I~l~l 388 (726)
-....|..|+|+.+.. .++..++|.|++.+. .+.+.|..|.-.-.++. ... ...||.|++..
T Consensus 89 ~~~~~s~GfrGeglssin-alS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~P 155 (201)
T 3fv5_A 89 KNYQFSGGLHGVGISVVN-ALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 155 (201)
T ss_dssp -------------CHHHH-HTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred CcccccCcccceecchhh-cccceEEEEEEecCc----eEEEEEeCCEEcccceecccCCCCCCCeEEEEEE
Confidence 1346889999995443 478899999998663 25566654432111221 122 45799998854
No 22
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.51 E-value=1.8e-07 Score=102.21 Aligned_cols=119 Identities=19% Similarity=0.244 Sum_probs=78.2
Q ss_pred HHHHHHHHHccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH--------HHHhhh-cccCCC--CC
Q 004873 256 FGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQP--DA 320 (726)
Q Consensus 256 f~AIaELIDNA~DA----~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k--~~ 320 (726)
..++.|||+||+|| .++.|.|.|.. . ..|+|.|||.||+.++ +..+|. +-.+.| ..
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~-------~--g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~ 103 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHA-------D--QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEec-------C--CEEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCC
Confidence 45799999999999 48999998862 2 3899999999999888 455453 222222 11
Q ss_pred CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEc-CcccC--CCCcEEEEEe
Q 004873 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYY--RKGQFMELDT 388 (726)
Q Consensus 321 ~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP-~~~~~--~~GT~I~l~l 388 (726)
.-....|..|+|+.+. -.++..++|.|+..+. .+.+.|..|.-.-.+. ..... ..||.|++..
T Consensus 104 ~~~~sgGl~GvGls~v-nalS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~P 169 (390)
T 1s16_A 104 NYQFSGGLHGVGISVV-NALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 169 (390)
T ss_dssp SCSSCSCCSSCHHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred cccccCCccccchHHH-HHhhcccEEEEEECCc----EEEEEEeCCcccccceecccccCCCCceEEEEEE
Confidence 1234678999999543 3478899999997652 3455665542111111 22233 5799998764
No 23
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.50 E-value=3.3e-07 Score=93.00 Aligned_cols=120 Identities=20% Similarity=0.231 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH--------HHhhh-c--ccCCC
Q 004873 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-F--GHKQP 318 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA----~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-f--G~S~k 318 (726)
-+..++.|||+||+|| .++.|.|.|.. ...|+|.|||.||+.+.. .-+|. . |.+-.
T Consensus 35 gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd 105 (220)
T 4duh_A 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcccccccccCcchhhheeeecccCCCcC
Confidence 3678899999999999 89999998862 147999999999999863 22232 1 22211
Q ss_pred CCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCc--cE-EEcCcccCCCCcEEEEEec
Q 004873 319 DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 319 ~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~--~v-iVP~~~~~~~GT~I~l~lk 389 (726)
...-...-|..|+|.++ .-.|+..++|.+++.+. .+.+.|..|.- .+ .++ .-...||+|++...
T Consensus 106 ~~~yk~SgGlhGvG~sv-vNAlS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~~g--~~~~~GT~V~F~Pd 172 (220)
T 4duh_A 106 DNSYKVSGGLHGVGVSV-VNALSQKLELVIQREGK----IHRQIYEHGVPQAPLAVTG--ETEKTGTMVRFWPS 172 (220)
T ss_dssp TTC--------CCCHHH-HHHTEEEEEEEEEETTE----EEEEEEETTEESSSCEEEE--ECSCCEEEEEEEEC
T ss_pred CCccccccCccceecch-hcccccceEEEEEECCE----EEEEEecCCcCcCCceecc--ccCCCCcEEEEEEC
Confidence 11124677999999954 34488899999988763 34566654421 11 122 22467999987643
No 24
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.47 E-value=2.4e-07 Score=94.40 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=84.3
Q ss_pred CCcceeecCHHHHHHhcccccCCHHHHHHHHHHccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH-
Q 004873 232 LEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD- 306 (726)
Q Consensus 232 ~~~~~~~v~p~~L~slstsh~~~~f~AIaELIDNA~DA----~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee- 306 (726)
.+..+++..|..-- +.....-+...+.|||+||+|+ .++.|.|.|.. ...|+|.|||.||+.++
T Consensus 20 ~~le~vr~RPgmYi--Gs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~GIp~~~h 88 (226)
T 4emv_A 20 EGLDAVRKRPGMYI--GSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRGMPTGMH 88 (226)
T ss_dssp BCTHHHHHCHHHHH--SCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBC
T ss_pred chhHHHhhCCceEE--cCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCCcccccc
Confidence 34555666665432 1111123567799999999999 78888888751 13799999999999987
Q ss_pred ------HHHhhh-cccCCCC--CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCC-Cc--cEE-Ec
Q 004873 307 ------VVRMTY-FGHKQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KD--NLE-IP 373 (726)
Q Consensus 307 ------L~~~l~-fG~S~k~--~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g-~~--~vi-VP 373 (726)
+.-+|. .-.+.|- ..-...-|..|+|.++ .-.|+..++|.+++.+. .+.+.|..| .. .+. +.
T Consensus 89 ~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~sv-vNALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~~l~~ig 163 (226)
T 4emv_A 89 AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV-VNALSSWLEVEITRDGA----VYKQRFENGGKPVTTLKKIG 163 (226)
T ss_dssp GGGCBHHHHHHHCBC--------------CGGGCCHHH-HHHTEEEEEEEEEETTE----EEEEEEETTTEESSCSEEEE
T ss_pred ccCceehheeEEeecccCccCccceEeccccccccchh-hhhcccceEEEEEeCCc----EEEEEECCCCEEcCCceEec
Confidence 444443 2112221 1124677999999954 44488899999998763 345666544 21 111 11
Q ss_pred CcccCCCCcEEEEEec
Q 004873 374 IVSYYRKGQFMELDTV 389 (726)
Q Consensus 374 ~~~~~~~GT~I~l~lk 389 (726)
...-...||+|++...
T Consensus 164 ~~~~~~~GT~V~F~PD 179 (226)
T 4emv_A 164 TALKSKTGTKVTFMPD 179 (226)
T ss_dssp ECCTTCCEEEEEEEEC
T ss_pred ccCCCCCCeEEEEEEC
Confidence 1111457999987654
No 25
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.46 E-value=3.1e-07 Score=100.39 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHccccc---C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH--------HHhhh-cccCCCC-
Q 004873 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPD- 319 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA---~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~- 319 (726)
-+...+.||||||+|| + ++.|.|.|.. . ..|+|.|||.||+.++. .-+|. +..+.|-
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~-------~--g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA-------D--NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECT-------T--SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC-------C--CEEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 4678899999999999 5 8999998862 2 38999999999999873 33443 2222221
Q ss_pred -CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCC--ccEEEcCcccCCCCcEEEEEe
Q 004873 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK--DNLEIPIVSYYRKGQFMELDT 388 (726)
Q Consensus 320 -~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~--~~viVP~~~~~~~GT~I~l~l 388 (726)
..-...-|..|+|+.+. -.++..++|.|+..+. .+.+.|..|. ..+.+... -...||.|++..
T Consensus 105 ~~~~~vSgGl~GvGls~v-nalS~~l~v~~~r~g~----~~~~~~~~G~~~~~l~~~~~-~~~~GT~V~f~P 170 (391)
T 1ei1_A 105 DNSYKVSGGLHGVGVSVV-NALSQKLELVIQREGK----IHRQIYEHGVPQAPLAVTGE-TEKTGTMVRFWP 170 (391)
T ss_dssp SSSCSSCSCCSSCHHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEEE-CSCCEEEEEEEE
T ss_pred CCcccccCCccccchHHH-HHhcCeEEEEEEeCCc----EEEEEEcCCcccccceeccC-cCCCccEEEEEE
Confidence 11234678999999543 3478889999987652 3445665442 11211111 145799998764
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.44 E-value=5.6e-07 Score=100.54 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccc
Q 004873 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~At-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG 327 (726)
.+..+|.|||+||+||.+. .|.|.+... ....+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~---~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLI---DDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEE---ETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEC---CCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 3668899999999999876 677776531 0113467899999999999999999876 4343332 1235568
Q ss_pred cccceeeeeee---ccCCe-EEEEEeeCCCCcceEEEeeec-CC-CccEEEcCc--c-cCCCCcEEEEEecc
Q 004873 328 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSLN-QG-KDNLEIPIV--S-YYRKGQFMELDTVV 390 (726)
Q Consensus 328 qFGvGFKsAsm---rLg~~-v~V~SK~~g~~s~g~ls~sf~-~g-~~~viVP~~--~-~~~~GT~I~l~lk~ 390 (726)
..|+|+..+.. ..|.. +.|.|+..+......+...+. .. .....-+.. . -...||.|++.+..
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~ 179 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPG 179 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEEC
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcC
Confidence 89999975432 23455 999998766421111222221 11 111111111 1 23479999888654
No 27
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.36 E-value=9e-07 Score=100.24 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccc
Q 004873 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~At-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG 327 (726)
.+..+|.|||+||+||.+. .|.|.+.... ...+...|+|.|||.||+++++..++. |..+.+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEE---TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECC---CcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 3668899999999999886 7888876310 112466899999999999999999876 4333332 1235678
Q ss_pred cccceeeeeee---ccCCe-EEEEEeeCCCCcceEEEeeec-CCCccEEE---cCccc-CCCCcEEEEEecc
Q 004873 328 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSLN-QGKDNLEI---PIVSY-YRKGQFMELDTVV 390 (726)
Q Consensus 328 qFGvGFKsAsm---rLg~~-v~V~SK~~g~~s~g~ls~sf~-~g~~~viV---P~~~~-~~~GT~I~l~lk~ 390 (726)
..|+|+..+.. ..|.. +.|.|+..+......+...+. ........ +...+ ...||.|.+.++.
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~ 178 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPG 178 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEEEEC
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEEecc
Confidence 89999965432 23555 999998765421111222221 11111111 11122 3579999888654
No 28
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.30 E-value=5.3e-07 Score=98.47 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcccccC----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--------hhh-cccCCCC--
Q 004873 255 IFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD-- 319 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~S~k~-- 319 (726)
+...|.|||+||+|+. ++.|.|.+.. . ..|+|.|||.||+.+++.. ++. +-...+-
T Consensus 33 ~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~-------~--~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~ 103 (390)
T 1kij_A 33 YHHLFKEILDNAVDEALAGYATEILVRLNE-------D--GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQ 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEEEEEECT-------T--SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGG
T ss_pred HHHHHHHHHHHHHHHhhhCCCCEEEEEEEc-------C--CEEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccC
Confidence 4567999999999996 7888887751 1 3899999999999998755 443 2111110
Q ss_pred CCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEE-cCccc--CCCCcEEEEEe
Q 004873 320 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI-PIVSY--YRKGQFMELDT 388 (726)
Q Consensus 320 ~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viV-P~~~~--~~~GT~I~l~l 388 (726)
.......|..|+|++.+. .++..+.|.|+..+. .+.+.|..|...-.+ +.... ...||.|++..
T Consensus 104 ~~~~~s~G~~G~Gls~v~-als~~~~v~t~~~g~----~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~P 170 (390)
T 1kij_A 104 GAYKVSGGLHGVGASVVN-ALSEWTVVEVFREGK----HHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKP 170 (390)
T ss_dssp SSCCCCSCSSTTSHHHHH-HTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEE
T ss_pred ccccccCCCCCcceeeec-ccccceEEEEecCCc----EEEEEEcCCcccccceeeccccCCCCCcEEEEEE
Confidence 011235689999996544 488899999997652 234555444211111 12222 45799998763
No 29
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.28 E-value=1.1e-06 Score=96.35 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH--------HHHhhh---cccCC
Q 004873 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY---FGHKQ 317 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~-----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~---fG~S~ 317 (726)
-+...+.||||||+||. ++.|.|.|.. + ...|+|.|||.||+.++ +.-+|. -|.+-
T Consensus 52 GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~------~--~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf 123 (400)
T 1zxm_A 52 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDP------E--NNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNY 123 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET------T--TTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC------C--CCEEEEEECCCcccCccccccCccchhheeeeecccCCC
Confidence 35677999999999997 7889988872 1 26999999999999876 333443 12221
Q ss_pred CCCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcC-ccc-CCCCcEEEEEec
Q 004873 318 PDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY-YRKGQFMELDTV 389 (726)
Q Consensus 318 k~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~-~~~-~~~GT~I~l~lk 389 (726)
....-.-..|..|+|..+ .-.|+..++|.++..... ..+.+.|..|......+. ... ...||.|++...
T Consensus 124 ~~~~ykvSgGlhGvGlsv-VnAlS~~l~v~v~~~~~g--~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~Pd 194 (400)
T 1zxm_A 124 DDDEKKVTGGRNGYGAKL-CNIFSTKFTVETASREYK--KMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPD 194 (400)
T ss_dssp CGGGCCCCSCCSSCHHHH-HHHTEEEEEEEEEETTTT--EEEEEEEETTTTEECCCEEEECCSCCEEEEEEEEC
T ss_pred CCCcccccCCccccceee-eEEeccceEEEEecCCCC--cEEEEEEccCccccCcceeccCCCCCccEEEEEEC
Confidence 111113477999999954 344888999999874321 224455644422211111 112 246999987643
No 30
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.26 E-value=6.9e-07 Score=97.01 Aligned_cols=119 Identities=8% Similarity=0.016 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccc
Q 004873 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA----~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqF 329 (726)
-+..++.||||||+|| .++.|.|.|.. . ..|+|.|||.||+. |+.-.+--|.+.........-+.-
T Consensus 30 gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~-------~--g~I~V~DnGrGIp~-e~v~~lhagsKf~~~~~~~~y~vs 99 (369)
T 3cwv_A 30 GLHHLVYFLLDVAYEEARRGECRDVVLEVGG-------D--GSIALFCTSRTVTA-ENLVRVATGAGFLGRPPGDGWGWD 99 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEEEESSCCH-HHHHHHHTTTTGGGSSCCCSTTTT
T ss_pred hHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC-------C--CEEEEEECCCCcCH-hHeeeeecCCCcCCCccccccccc
Confidence 4678899999999998 79999998862 2 38999999999999 433233223222110000111222
Q ss_pred cceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCcc----EEEc---CcccCCCCcEEEEEe
Q 004873 330 GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN----LEIP---IVSYYRKGQFMELDT 388 (726)
Q Consensus 330 GvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~----viVP---~~~~~~~GT~I~l~l 388 (726)
| |.. +.-.++..++|.|+..+. .+.+.|..|.-. -.-| .......||.|++..
T Consensus 100 G-Gls-~vnalSs~l~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~P 159 (369)
T 3cwv_A 100 S-MLV-VSLALSSRYQVDIWADGR----QWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFVP 159 (369)
T ss_dssp S-SHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEEE
T ss_pred C-HHH-HHHHhhceEEEEEEECCC----EEEEEEeCCcccccccccCCceEecccCCCCCEEEEEE
Confidence 4 653 333477899999998653 234555444210 0111 111235699988764
No 31
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.16 E-value=2e-06 Score=98.95 Aligned_cols=131 Identities=16% Similarity=0.254 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccc
Q 004873 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~At-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG 327 (726)
.+..+|.|||+||+||.++ .|.|.+... +.+...|+|.|||.||+.+++..++. |.++.+-.......|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERT-----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 3567899999999999875 666666531 21446899999999999999999875 322222111224458
Q ss_pred cccceeeeeee---ccCCe-EEEEEeeCCCCcceEEEeee--cCCCccE--EEcCcccCCCCcEEEEEec
Q 004873 328 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSL--NQGKDNL--EIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 328 qFGvGFKsAsm---rLg~~-v~V~SK~~g~~s~g~ls~sf--~~g~~~v--iVP~~~~~~~GT~I~l~lk 389 (726)
..|+|+..+.. .++.. +.|.|+..+......+...+ ..|.... .-+.+.-...||.|++.++
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~f~ 181 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMR 181 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECS
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEEec
Confidence 89999965432 12333 78999876632121222211 2222221 1112222347999988764
No 32
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.14 E-value=4e-06 Score=92.17 Aligned_cols=120 Identities=21% Similarity=0.210 Sum_probs=68.6
Q ss_pred HHHHHHHHHccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH--------HHhhh---cccCCCCC
Q 004873 256 FGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY---FGHKQPDA 320 (726)
Q Consensus 256 f~AIaELIDNA~DA----~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~---fG~S~k~~ 320 (726)
...+.|+||||+|+ .++.|.|.|.. ...|+|.|||.||+.+.. .-+|. -|.+-...
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~ 122 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNR 122 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC---------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCC
Confidence 45699999999999 78999988751 248999999999998763 22232 12221111
Q ss_pred CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCC--ccEE-EcCcccCCCCcEEEEEec
Q 004873 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK--DNLE-IPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 321 ~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~--~~vi-VP~~~~~~~GT~I~l~lk 389 (726)
.-...-|..|+|.+ +.-.|+..++|.+++.+. .+.+.|..|. ..+. +........||.|++...
T Consensus 123 ~ykvSgGlhGvG~s-vVNALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD 189 (408)
T 3lnu_A 123 NYTFSGGLHGVGVS-VVNALSTKVELFIKREGS----EHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWAD 189 (408)
T ss_dssp -----------CHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEECSCCEEEEECCTTCCEEEEEEEEC
T ss_pred ceeecCCccccccc-eehhccCeEEEEEEECCE----EEEEEECCCEECCCceEeccCcCCCCCcEEEEEEC
Confidence 12356789999995 444588999999998763 3556675442 1111 111111357999987643
No 33
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.83 E-value=2.1e-05 Score=86.72 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--------hhh---cccCCC
Q 004873 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQP 318 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~-----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~---fG~S~k 318 (726)
+...+.|+||||+|+. ++.|.|.|.. +...|+|.|||.||+.+.... +|. -|.+-.
T Consensus 65 L~~lv~EivdNaiDe~~~~g~~~~I~V~i~~--------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd 136 (418)
T 1pvg_A 65 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 136 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred HHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC--------CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccC
Confidence 4557999999999985 6889988872 226899999999998765322 232 222211
Q ss_pred CCCCCCccccccceeeeeeeccCCeEEEEEeeC-CCCcceEEEeeecCCCccE---EEcCcccCCCCcEEEEEecc
Q 004873 319 DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA-DSRSIAFLSQSLNQGKDNL---EIPIVSYYRKGQFMELDTVV 390 (726)
Q Consensus 319 ~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~-g~~s~g~ls~sf~~g~~~v---iVP~~~~~~~GT~I~l~lk~ 390 (726)
...-.-.-|..|+|.+ +.-.|+..+.|.++.. +. -.+.++|..|.... .+........||.|+.....
T Consensus 137 ~~~ykvSGGLhGVG~S-vVNALS~~l~V~v~r~rdG---k~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD~ 208 (418)
T 1pvg_A 137 DDEKKVTGGRNGYGAK-LCNIFSTEFILETADLNVG---QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDL 208 (418)
T ss_dssp TTSCCCCSCCSSCHHH-HHHHTEEEEEEEEEETTTT---EEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECG
T ss_pred CCceeccCCccceeee-eeeeccceEEEEEEECCCC---cEEEEEEEcCCCccCCCeecccCCCCCceEEEEEECh
Confidence 1112346689999994 4455889999999852 22 23556775542111 11111113579998876543
No 34
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.76 E-value=3.3e-05 Score=77.10 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=66.1
Q ss_pred HHHHHHHHHHccccc---C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccc
Q 004873 255 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 255 ~f~AIaELIDNA~DA---~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFG 330 (726)
+...+.|||+||+|+ + ++.|.|.|.. + ..|+|.|||.||+.+.-. .+ +. .....+ |+
T Consensus 32 l~~~v~Elv~NsiD~~~ag~~~~I~V~i~~------~---g~i~V~DnG~Gip~~~h~------~~-~~-~~~e~i--~t 92 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALAGYANQIEVVIEK------D---NWIKVTDNGRGIPVDIQE------KM-GR-PAVEVI--LT 92 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEEEEEEEG------G---GEEEEEECSSCCCCSBCT------TT-SS-BHHHHH--HH
T ss_pred hHHHHHHHHHHHHhHHhcCCCcEEEEEEeC------C---CeEEEEECCCCccccccC------cC-CC-cccccc--ce
Confidence 567799999999995 7 8999998872 1 389999999999986210 00 00 001111 22
Q ss_pred ceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCc--cE-EEcCcccCCCCcEEEEEec
Q 004873 331 VGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 331 vGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~--~v-iVP~~~~~~~GT~I~l~lk 389 (726)
-++.-.|+..++|.+++.+. .+.+.|..|.- .. .++ .-...||+|++...
T Consensus 93 ---~SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~Pd 145 (198)
T 3ttz_A 93 ---SSVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFKAD 145 (198)
T ss_dssp ---TCHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEE--ECSCCEEEEEEEEC
T ss_pred ---eEehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceecc--CCCCCCcEEEEEEC
Confidence 12222467889999988774 34566654421 11 122 22467999987643
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.65 E-value=7.1e-05 Score=68.15 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceee
Q 004873 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFK 334 (726)
+..++.+||+||+.+....|.|.+.. ..+...|.|.|||.||+.+++.+++.-+.+.+.. -+..|+|++
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 45679999999999987766666653 4456789999999999999998887644333211 134688875
Q ss_pred eee---eccCCeEEEEEee
Q 004873 335 TGA---MRLGKDALVLTQT 350 (726)
Q Consensus 335 sAs---mrLg~~v~V~SK~ 350 (726)
.+- -.+|.++.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 322 1356777776643
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.47 E-value=0.0001 Score=68.14 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceee
Q 004873 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFK 334 (726)
+..+|.+||+||+.+....|.|.+.. ..+...|.|.|||.||+.+++.+++....+.+.. ..-+..|+|++
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 45679999999999987778887763 3356789999999999999988887633332211 11245688886
Q ss_pred eeee---ccCCeEEEEEee
Q 004873 335 TGAM---RLGKDALVLTQT 350 (726)
Q Consensus 335 sAsm---rLg~~v~V~SK~ 350 (726)
.+-- .+|..+.+.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 4321 357777777653
No 37
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.32 E-value=0.00018 Score=71.53 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccc
Q 004873 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqF 329 (726)
+..+|..||+||+++... .|.|.+.. ..+...|.|.|||.||+++++.+++.-.++.+.. .....+-.
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 456799999999998642 25555442 3345789999999999999999888633322211 11122346
Q ss_pred cceeeeee---eccCCeEEEEEee
Q 004873 330 GVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 330 GvGFKsAs---mrLg~~v~V~SK~ 350 (726)
|+|+..+- -..|..+.|.|..
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEET
T ss_pred chHHHHHHHHHHHcCCEEEEEecC
Confidence 88875321 1357777777754
No 38
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.30 E-value=0.00019 Score=77.56 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcccccCCC---------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCC----
Q 004873 255 IFGAIAELVDNSRDAKAT---------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At---------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~---- 321 (726)
+..+|.+||+||+.|... .|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 446699999999998532 57777763 44567899999999999999999987544433210
Q ss_pred -CCCccccccceeeeee---eccCCeEEEEEee
Q 004873 322 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 322 -d~~~IGqFGvGFKsAs---mrLg~~v~V~SK~ 350 (726)
.....+-+|+|+..+- -..|.++.|.|..
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 1234466889985331 1357777777754
No 39
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.24 E-value=0.0002 Score=64.83 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004873 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..++.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+. +..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-------~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC-------CCCCcC
Confidence 45679999999999863 456666553 345678999999999999999888764333221 235888
Q ss_pred eeeee--e--ccCCeEEEEEe
Q 004873 333 FKTGA--M--RLGKDALVLTQ 349 (726)
Q Consensus 333 FKsAs--m--rLg~~v~V~SK 349 (726)
++.+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86431 2 35667766654
No 40
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.22 E-value=0.0004 Score=68.96 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004873 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..+|.+||+||+++... .|.|.+.. ..+...|.|.|||.||+.+++.+++..+.+.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 557799999999999754 56665552 445678999999999999999888764443221 245888
Q ss_pred eeeee---eccCCeEEEEEee
Q 004873 333 FKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 333 FKsAs---mrLg~~v~V~SK~ 350 (726)
++.+- -.+|..+.+.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 85332 2357777776654
No 41
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.19 E-value=0.00023 Score=76.44 Aligned_cols=90 Identities=14% Similarity=0.288 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcccccCC---------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCC----
Q 004873 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A---------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~---- 321 (726)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 44669999999999843 247777753 44567899999999999999999987544433210
Q ss_pred CCCccccccceeeeee---eccCCeEEEEEee
Q 004873 322 DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 322 d~~~IGqFGvGFKsAs---mrLg~~v~V~SK~ 350 (726)
.....+-+|+|+..+- -..|.++.|.|..
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 1223456788885332 1357778877754
No 42
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.18 E-value=0.00026 Score=76.25 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcccccCC---------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCC-----
Q 004873 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA----- 320 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A---------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~----- 320 (726)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 44669999999999853 247777763 4456789999999999999999998754443321
Q ss_pred CCCCccccccceeeeee---eccCCeEEEEEee
Q 004873 321 DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 321 ~d~~~IGqFGvGFKsAs---mrLg~~v~V~SK~ 350 (726)
......+-+|+|+..+- -..|.++.|.|..
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 01223456788885331 1357777777754
No 43
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.18 E-value=0.00035 Score=63.85 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccc
Q 004873 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-----t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqF 329 (726)
+..+|.|||+||+.++. ..|.|.+.. ..+...|.|.|||.||+ ++.+.+.-..+.+. ..+..
T Consensus 40 l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~~ 106 (145)
T 1th8_A 40 IKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELERS 106 (145)
T ss_dssp HHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCCC
Confidence 56789999999998863 456666553 33567899999999999 66776653333221 11235
Q ss_pred cceeeeeeeccCCeEEEEEee
Q 004873 330 GVGFKTGAMRLGKDALVLTQT 350 (726)
Q Consensus 330 GvGFKsAsmrLg~~v~V~SK~ 350 (726)
|+|+..+- ++.+.+.+.+..
T Consensus 107 GlGL~iv~-~~~~~i~~~~~~ 126 (145)
T 1th8_A 107 GMGFTIME-NFMDEVIVESEV 126 (145)
T ss_dssp SCHHHHHH-HHSSEEEEEEET
T ss_pred cchHHHHH-HHHheEEEEeCC
Confidence 88885432 244466665543
No 44
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.18 E-value=0.00056 Score=62.28 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcccccCCC-ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004873 255 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At-~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
+..+|.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-...... ..-+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 456799999999998654 45555442 334678999999999999999998763332111 1123468887
Q ss_pred eeee---eccCCeEEEEEee
Q 004873 334 KTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 334 KsAs---mrLg~~v~V~SK~ 350 (726)
+.+- -.+|..+.+.+..
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEeecC
Confidence 5321 1356677776643
No 45
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.16 E-value=0.00013 Score=69.40 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcccccC--------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH
Q 004873 255 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~--------------At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL 307 (726)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHH
Confidence 4456999999999985 3456665543 345678999999999999987
No 46
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.14 E-value=0.00021 Score=68.52 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccceee
Q 004873 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFK 334 (726)
+..+|.+||+||+.+....-.|.|... ...|.|.|||.||+++++.+.+....+.+. ...+..|+|+.
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 456799999999999765545555421 122999999999999999888763333221 11234688875
Q ss_pred eeee---ccCCeEEEEEee
Q 004873 335 TGAM---RLGKDALVLTQT 350 (726)
Q Consensus 335 sAsm---rLg~~v~V~SK~ 350 (726)
.+-- .+|.++.|.|..
T Consensus 186 i~~~i~~~~gG~i~i~s~~ 204 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNAE 204 (222)
T ss_dssp HHHHHHHHTTCEEECCBCT
T ss_pred HHHHHHHHcCCEEEEEcCC
Confidence 3221 245555555543
No 47
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.13 E-value=0.00026 Score=77.04 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcccccCC----------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCC----
Q 004873 255 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 320 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A----------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~---- 320 (726)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 44569999999999853 257777753 4456789999999999999999998744433211
Q ss_pred -CCCCccccccceeeeee---eccCCeEEEEEee
Q 004873 321 -DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 321 -~d~~~IGqFGvGFKsAs---mrLg~~v~V~SK~ 350 (726)
......+-+|+|+..+- -..|.++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 01223456889985331 1357777777754
No 48
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.09 E-value=0.00018 Score=77.00 Aligned_cols=90 Identities=22% Similarity=0.348 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcccccCCC----------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCC---
Q 004873 255 IFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--- 321 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At----------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~--- 321 (726)
+..+|.+||+||+.|... .|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 239 L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 239 LDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 557799999999998432 67777763 44567899999999999999999887444332210
Q ss_pred ----------------CCCccccccceeeeeee---ccCCeEEEEEee
Q 004873 322 ----------------DPNRIGRFGVGFKTGAM---RLGKDALVLTQT 350 (726)
Q Consensus 322 ----------------d~~~IGqFGvGFKsAsm---rLg~~v~V~SK~ 350 (726)
.....+-+|+|+..+-. ..|.++.|.|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 01233557888853321 357788887764
No 49
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.05 E-value=0.00062 Score=66.19 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004873 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..+|.+||+||+.+.. ..|.|.+.. ..+...|.|.|||.||+.+++.+++..+.+.+. .+..|+|
T Consensus 124 l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~------~~g~GlG 191 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTKG------VKGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG------GGCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCCC------CCCcchh
Confidence 55779999999999964 456666553 345678999999999999999988764443321 2345888
Q ss_pred eeeeee---ccCCeEEEEEee
Q 004873 333 FKTGAM---RLGKDALVLTQT 350 (726)
Q Consensus 333 FKsAsm---rLg~~v~V~SK~ 350 (726)
++.+-- .+|..+.+.+..
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~ 212 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEI 212 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 853321 357777777754
No 50
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.00 E-value=0.00016 Score=65.93 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcccccC---CCccEEEEEeceecc----CCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccc
Q 004873 255 IFGAIAELVDNSRDAK---ATKLEISIESIYFKK----AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~---At~I~I~I~~~~~~~----~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG 327 (726)
+..++.+||+||+.+. ...|.|.+....... .......|.|.|||.||+.+++.+.+....+.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 4567999999999985 455666655311000 0001467899999999999999888764333221 2
Q ss_pred cccceeeeee---eccCCeEEEEEee
Q 004873 328 RFGVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 328 qFGvGFKsAs---mrLg~~v~V~SK~ 350 (726)
..|+|++.+- -.+|..+.+.+..
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 4688875322 1357777777654
No 51
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.93 E-value=0.00066 Score=63.80 Aligned_cols=92 Identities=17% Similarity=0.276 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004873 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..+|.+||+||+++.. ..+.|.+... ...+...|.|.|||.||+.+++.+++..+.+.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 44669999999999864 4456655321 24456789999999999999988887643332211 11223456888
Q ss_pred eeeeee---ccCCeEEEEEeeC
Q 004873 333 FKTGAM---RLGKDALVLTQTA 351 (726)
Q Consensus 333 FKsAsm---rLg~~v~V~SK~~ 351 (726)
++.+-. .+|..+.+.+...
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 864322 3567777766543
No 52
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.81 E-value=0.00092 Score=71.96 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcccccC------------C--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH-------------
Q 004873 255 IFGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV------------- 307 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~------------A--t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL------------- 307 (726)
+..++.+||.||++++ . ..|.|.+.. .++.-.|.|.|||.||+++++
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~ 180 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 180 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCST
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChh
Confidence 3456899999999996 2 345555542 345678999999999999987
Q ss_pred -----------HHhhhcccCCCCCCCCCccccccceeeee---eeccCCeEEEEEeeC
Q 004873 308 -----------VRMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (726)
Q Consensus 308 -----------~~~l~fG~S~k~~~d~~~IGqFGvGFKsA---smrLg~~v~V~SK~~ 351 (726)
...|..|++.+. .....+-.|+|+..+ .-.+|..+.|.|...
T Consensus 181 ~~~~~~~~~~~~~iF~p~fst~~--~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 181 KAATLSDQEILNFLFVPGFSTKE--KVSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhhcCCHHHHHHHhcCCCCccCC--ccCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 334444554432 123345568888522 124688888888754
No 53
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.64 E-value=0.0011 Score=63.99 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccccee
Q 004873 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGF 333 (726)
++.++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++.+ +..|+|+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 185 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 185 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC---------------------------CHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC-------------------CCCCCCH
Confidence 4567999999999875 4567776653 345678999999999998865 1237777
Q ss_pred eeee---eccCCeEEEEEee
Q 004873 334 KTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 334 KsAs---mrLg~~v~V~SK~ 350 (726)
..+- -.+|..+.|.|..
T Consensus 186 ~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 186 LGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 4321 1356677766644
No 54
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.59 E-value=0.0012 Score=67.71 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcccccC--CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004873 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~--At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
+..+|.+||+||+++. +..|.|.+.. ..+.-.|.|.|||.||+++++.+.+..+.+.+. +..|+|
T Consensus 245 l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlG 311 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 311 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccch
Confidence 5678999999999996 3567776653 345678999999999999999888764443331 234788
Q ss_pred eeeee--e--ccCCeEEEEEe
Q 004873 333 FKTGA--M--RLGKDALVLTQ 349 (726)
Q Consensus 333 FKsAs--m--rLg~~v~V~SK 349 (726)
+..+- + ..|..+.+.+.
T Consensus 312 L~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 312 LSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CTHHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 75321 1 25666666554
No 55
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.39 E-value=0.0031 Score=55.86 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccccce
Q 004873 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvG 332 (726)
.+..++.|||+||+.+. +..|.|.+.. ..+ ..|.|.|||.||++++ .|+|
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~----------------------~GlG 93 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF----------------------TGSG 93 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT----------------------CSHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc----------------------CCcC
Confidence 36678999999999986 5677777763 334 7899999999998764 3778
Q ss_pred eeeee---eccCCeEEEEEeeC
Q 004873 333 FKTGA---MRLGKDALVLTQTA 351 (726)
Q Consensus 333 FKsAs---mrLg~~v~V~SK~~ 351 (726)
++.+- -.+|..+.+.+...
T Consensus 94 L~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 94 LTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEeeCCC
Confidence 75321 13566676666543
No 56
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.35 E-value=0.002 Score=57.75 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH
Q 004873 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~-At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL 307 (726)
++.++.|||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC
Confidence 5668999999999875 5677777753 345678999999999987654
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.93 E-value=0.0052 Score=54.07 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH
Q 004873 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (726)
+..++.||++||+.+.. ..|.|.+.. ..+ ..|.|.|||.||++++
T Consensus 40 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 40 AEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 56789999999999754 567777653 234 7899999999999875
No 58
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.027 Score=69.31 Aligned_cols=122 Identities=13% Similarity=0.111 Sum_probs=69.2
Q ss_pred HHHHHHHHccccc---C-C-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH--------HHHhhh---cccCCCCC
Q 004873 257 GAIAELVDNSRDA---K-A-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY---FGHKQPDA 320 (726)
Q Consensus 257 ~AIaELIDNA~DA---~-A-t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~---fG~S~k~~ 320 (726)
--+-|+||||+|. + + +.|.|.|.. ....|+|.|||.||+-+. +.-+|+ -|.+-...
T Consensus 62 hl~~EildNsiDea~ag~~~~~I~V~i~~--------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~ 133 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD 133 (1177)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCS
T ss_pred eEeeEEEEChHhHHhhCCCCCeEEEEEEC--------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCC
Confidence 4489999999993 3 2 568887762 246899999999998541 111222 12221111
Q ss_pred CCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcC---cccCCCCcEEEEEec
Q 004873 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI---VSYYRKGQFMELDTV 389 (726)
Q Consensus 321 ~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~---~~~~~~GT~I~l~lk 389 (726)
.-.-+-|..|||.+ +.-.|+..+.|.+..... ...+.++|..|......|. ......||.|+....
T Consensus 134 ~ykvSGGLHGVG~s-vVNALS~~~~vev~~~r~--Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~PD 202 (1177)
T 4gfh_A 134 EKKVTGGRNGYGAK-LCNIFSTEFILETADLNV--GQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPD 202 (1177)
T ss_dssp SCCCCSCCSSCHHH-HHHHTEEEEEEEEEETTT--TEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEEEC
T ss_pred CCeEeccCCChhhh-HHhhcCCceEEEEEEEcC--CEEEEEEEECCcccCCCCeeecCCCCCCceEEEEEeC
Confidence 11345689999984 334467777766642211 1235567755532221221 122346899887654
No 59
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=92.63 E-value=0.016 Score=68.46 Aligned_cols=45 Identities=42% Similarity=0.893 Sum_probs=37.2
Q ss_pred CceEeCC--cchhhccCCCCCC-CCCCCCCceecCCCC-------CCCCCCCccc
Q 004873 616 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWFCYMKPF-------EGLCDLPEQK 660 (726)
Q Consensus 616 ~~WVQCd--~C~KWR~Lp~~~~-~~~lp~~W~C~mnp~-------~~sC~~pEe~ 660 (726)
.-|+||- .|.|||+||.... ...++.+..|.|-++ ...|+.||+.
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 145 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDL 145 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCccc
Confidence 5899999 9999999998865 356788999998641 4789999984
No 60
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=92.53 E-value=0.085 Score=52.83 Aligned_cols=82 Identities=9% Similarity=-0.084 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCC--CCHHHHHHhhhcccCCCCCCCCCcccccc
Q 004873 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 255 ~f~AIaELIDNA~DA~At--~I~I~I~~~~~~~~~~~~~~L~I~DNG~G--Mt~eeL~~~l~fG~S~k~~~d~~~IGqFG 330 (726)
...++.-||+||++|... .|.|.+.. ..+...|.|.|+|.| |+++.+...+.-..+.+ .+--|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~-------~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEG-------LGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSS-------CHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC-------CCCcc
Confidence 446788999999999653 56666553 345778999999977 66665555543211111 12348
Q ss_pred ceeeee---eeccCCeEEEEEe
Q 004873 331 VGFKTG---AMRLGKDALVLTQ 349 (726)
Q Consensus 331 vGFKsA---smrLg~~v~V~SK 349 (726)
+|+..+ .-..|..+.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 887532 1135777777664
No 61
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.25 E-value=0.086 Score=42.87 Aligned_cols=34 Identities=18% Similarity=0.461 Sum_probs=22.8
Q ss_pred CCCceEeCCcchhhccCC-CCCCC--CCCCCCceecC
Q 004873 614 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 647 (726)
Q Consensus 614 ~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 647 (726)
++..|||||.|..|=-+. .++.. ...++.|+|..
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 457899999999995543 22322 23468999853
No 62
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=90.71 E-value=0.13 Score=42.81 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=24.3
Q ss_pred CCceEeCCcchhhccCC-CCCCCCCCCCCceec
Q 004873 615 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 646 (726)
+..+||||.|..|--+. -++.....|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 45799999999997665 234444678999995
No 63
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=89.55 E-value=0.15 Score=40.10 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=24.6
Q ss_pred CCceEeCCcchhhccCC-CCCCCCCCCCCceec
Q 004873 615 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 646 (726)
+..+||||.|..|--+. -++.....|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 56999999999997765 244444678999985
No 64
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.60 E-value=0.36 Score=42.80 Aligned_cols=33 Identities=30% Similarity=0.815 Sum_probs=24.8
Q ss_pred CCceEeCCcchhhccCC-CCCCCCCCCCCceecC
Q 004873 615 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 647 (726)
Q Consensus 615 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~m 647 (726)
+..+||||.|.+|--+. .++.....|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 46899999999997654 2333457789999964
No 65
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.49 E-value=0.43 Score=39.81 Aligned_cols=31 Identities=23% Similarity=0.853 Sum_probs=22.3
Q ss_pred CceEeCCcchhhccCC-CCCC-CCCCCCCceec
Q 004873 616 QEWVQCNKCRKWRMLD-PGFD-TKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCd~C~KWR~Lp-~~~~-~~~lp~~W~C~ 646 (726)
..|||||.|..|--+. -++. ....|+.|+|.
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 4799999999996554 2232 13578999995
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=83.68 E-value=0.83 Score=49.33 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004873 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 254 ~~f~AIaELIDNA~DA~-----At~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (726)
.+.-++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|+++.
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC
Confidence 45678999999999986 56777777631 2346789999999999875
No 67
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.17 E-value=0.2 Score=42.56 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=21.5
Q ss_pred CCCceEeCCcchhhccCC-CCCC--CCCCCCCceec
Q 004873 614 PDQEWVQCNKCRKWRMLD-PGFD--TKSLPVEWFCY 646 (726)
Q Consensus 614 ~~~~WVQCd~C~KWR~Lp-~~~~--~~~lp~~W~C~ 646 (726)
.+..|||||.|..|=-.. -++. ....++.|+|.
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECC
Confidence 367999999999994322 1121 12347899985
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=79.20 E-value=0.82 Score=45.09 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=31.6
Q ss_pred HHHHHHcccccC--------CCccEEEEEeceeccCC--CCcCEEEEEeCCCCCCHHHHHHhhh
Q 004873 259 IAELVDNSRDAK--------ATKLEISIESIYFKKAG--KDIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 259 IaELIDNA~DA~--------At~I~I~I~~~~~~~~~--~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
+..|++||.+|. ...|.|.+.. . ++...|.|.|+|.|++.+.+.+.+.
T Consensus 110 lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~------~~~~~~l~i~V~d~G~~i~~e~~~~if~ 167 (192)
T 1ixm_A 110 LAKLMRKLFHLFDQAVSRESENHLTVSLQT------DHPDRQLILYLDFHGAFADPSAFDDIRQ 167 (192)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCCEEEEEEEC------CCSSSSCEEEEEEESCBSCGGGCC----
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEEEE------ecCCCEEEEEEEeCCCCCCHHHHHHHHh
Confidence 344555555552 3567777762 3 4578999999999999998877764
No 69
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=76.21 E-value=0.49 Score=45.40 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=22.1
Q ss_pred CCCceEeCCcchhhccCC-CCCC--CCCCCCCceecC
Q 004873 614 PDQEWVQCNKCRKWRMLD-PGFD--TKSLPVEWFCYM 647 (726)
Q Consensus 614 ~~~~WVQCd~C~KWR~Lp-~~~~--~~~lp~~W~C~m 647 (726)
....|||||.|..|=-.. -++. ....++.|+|..
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 356899999999993322 1121 124578999964
No 70
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=76.13 E-value=0.67 Score=38.96 Aligned_cols=33 Identities=15% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCCceEeCCcchhhccCC-CCCCC--CCCCCCceec
Q 004873 614 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCY 646 (726)
Q Consensus 614 ~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~ 646 (726)
.+..|||||.|..|=-.. -++.. ...++.|+|.
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECC
Confidence 467999999999995432 12221 1234789885
No 71
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=75.57 E-value=1.1 Score=35.18 Aligned_cols=35 Identities=26% Similarity=0.690 Sum_probs=22.7
Q ss_pred CCCCCceEeCC-cchhhccCC-CCCCC-CCCCCCceec
Q 004873 612 YKPDQEWVQCN-KCRKWRMLD-PGFDT-KSLPVEWFCY 646 (726)
Q Consensus 612 ~~~~~~WVQCd-~C~KWR~Lp-~~~~~-~~lp~~W~C~ 646 (726)
|..+..||||| .|.+|=-+. -++.. ...+++|+|.
T Consensus 12 ~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 12 CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 44467899999 899995543 23321 1124889885
No 72
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=74.19 E-value=1.1 Score=37.01 Aligned_cols=16 Identities=38% Similarity=1.039 Sum_probs=14.2
Q ss_pred CCCCCceEeCC-cchhh
Q 004873 612 YKPDQEWVQCN-KCRKW 627 (726)
Q Consensus 612 ~~~~~~WVQCd-~C~KW 627 (726)
|.++..||||| .|.+|
T Consensus 18 ~~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKW 34 (65)
T ss_dssp CCTTSCEEEBTTTTCCE
T ss_pred cCCCCCeEecccCcccc
Confidence 55678999999 99999
No 73
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=67.96 E-value=1.2 Score=40.07 Aligned_cols=18 Identities=33% Similarity=0.840 Sum_probs=14.1
Q ss_pred CCCCCceEeCC-cchhhcc
Q 004873 612 YKPDQEWVQCN-KCRKWRM 629 (726)
Q Consensus 612 ~~~~~~WVQCd-~C~KWR~ 629 (726)
|.++..||||| .|..|=-
T Consensus 13 ~~~~~~mi~Cdd~C~~WfH 31 (105)
T 2xb1_A 13 VNDDQDAILCEASCQKWFH 31 (105)
T ss_dssp CCTTSCEEECTTTTCCEEE
T ss_pred cCCCCCEEEecCCcccccc
Confidence 34567899998 9999943
No 74
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.25 E-value=1.7 Score=36.81 Aligned_cols=33 Identities=21% Similarity=0.701 Sum_probs=22.8
Q ss_pred CCCceEeCC--cchhhccCC-CCCCC------CCCCCCceec
Q 004873 614 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWFCY 646 (726)
Q Consensus 614 ~~~~WVQCd--~C~KWR~Lp-~~~~~------~~lp~~W~C~ 646 (726)
.+..||||| .|..|--+. -++.. ...|++|+|.
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 456999999 999996542 12211 1578999995
No 75
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=66.86 E-value=1.7 Score=36.23 Aligned_cols=32 Identities=22% Similarity=0.724 Sum_probs=19.6
Q ss_pred CCceEeCCcchhhccCC-CCCCCC-CCCCCceec
Q 004873 615 DQEWVQCNKCRKWRMLD-PGFDTK-SLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCd~C~KWR~Lp-~~~~~~-~lp~~W~C~ 646 (726)
...|||||.|..|=-+. .++... ...+.|||.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 35799999999995321 011111 124799995
No 76
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=62.65 E-value=4.4 Score=33.32 Aligned_cols=32 Identities=22% Similarity=0.768 Sum_probs=22.8
Q ss_pred CCceEeCC--cchhhccCC-CCCC-----CCCCCCCceec
Q 004873 615 DQEWVQCN--KCRKWRMLD-PGFD-----TKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCd--~C~KWR~Lp-~~~~-----~~~lp~~W~C~ 646 (726)
+..+|||| .|..|--.. -++. ....|++|||.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 46899999 599997665 2221 23568899995
No 77
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=60.39 E-value=3.4 Score=46.84 Aligned_cols=37 Identities=27% Similarity=0.720 Sum_probs=25.3
Q ss_pred CCCCCCceEeCCcchhhccCC-CCCCC--CCCCCCceecC
Q 004873 611 LYKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 647 (726)
Q Consensus 611 ~~~~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 647 (726)
..-++..|||||.|..|=-.. -++.. ....++|+|-.
T Consensus 51 ~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 51 HKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 344688999999999996543 23322 34568999943
No 78
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.32 E-value=2.9 Score=34.96 Aligned_cols=32 Identities=19% Similarity=0.566 Sum_probs=20.2
Q ss_pred CCceEeCCcchhhccCC-CCCCCC------CCCCCceec
Q 004873 615 DQEWVQCNKCRKWRMLD-PGFDTK------SLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCd~C~KWR~Lp-~~~~~~------~lp~~W~C~ 646 (726)
+..|||||.|..|=-.. -++... ..++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 45899999999994332 112111 136889985
No 79
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.93 E-value=5.2 Score=35.22 Aligned_cols=31 Identities=29% Similarity=0.772 Sum_probs=20.0
Q ss_pred CCceEeCCc--ch-hhccCCC-CCCCCCCCCCceec
Q 004873 615 DQEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 646 (726)
...+||||. |. .|=-+.= ++ ....+++|||.
T Consensus 46 ~g~MI~CD~~dC~~~WfH~~CVgl-~~~p~g~W~Cp 80 (91)
T 1weu_A 46 YGEMIGCDNPDCSIEWFHFACVGL-TTKPRGKWFCP 80 (91)
T ss_dssp CSCCCCCSCSSCSCCCCCSTTTTC-SSCCCSSCCCT
T ss_pred CCCEeEecCCCCCCCCEecccCCc-CcCCCCCEECc
Confidence 358999999 77 8954431 22 12335799996
No 80
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.80 E-value=7.3 Score=32.51 Aligned_cols=31 Identities=26% Similarity=0.745 Sum_probs=20.1
Q ss_pred CCceEeCCc--ch-hhccCCC-CCCCCCCCCCceec
Q 004873 615 DQEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 646 (726)
...+||||. |. .|=-+.= ++. ....++|||.
T Consensus 26 ~g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp 60 (71)
T 1wen_A 26 YGEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 60 (71)
T ss_dssp CSSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCT
T ss_pred CCCEeEeeCCCCCCccEecccCCcC-cCCCCCEECC
Confidence 358999999 87 7954431 221 2224899995
No 81
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=51.51 E-value=2.6 Score=47.35 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCCceEeCCcchhhccCC-CCCCC--CCCCCCceecC
Q 004873 614 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 647 (726)
Q Consensus 614 ~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 647 (726)
++..|||||.|..|=-.. -++.. ...+++|+|..
T Consensus 48 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 48 VNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp TTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 467899999999995432 12222 24468899954
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=46.99 E-value=6.5 Score=38.64 Aligned_cols=15 Identities=33% Similarity=0.944 Sum_probs=12.7
Q ss_pred CceEeCCcchhhccC
Q 004873 616 QEWVQCNKCRKWRML 630 (726)
Q Consensus 616 ~~WVQCd~C~KWR~L 630 (726)
..|||||.|..|=-.
T Consensus 19 ~~MIqCd~C~~W~H~ 33 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHS 33 (183)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCeEECCCCCcccch
Confidence 369999999999654
No 83
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=46.18 E-value=7.3 Score=31.67 Aligned_cols=30 Identities=20% Similarity=0.691 Sum_probs=19.1
Q ss_pred CceEeCCc--ch-hhccCCC-CCCCCCCCCCceec
Q 004873 616 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 646 (726)
..+||||. |. .|=-+.= ++. ....++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECc
Confidence 47999999 55 8954431 222 2235799985
No 84
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=45.76 E-value=7.5 Score=31.25 Aligned_cols=30 Identities=23% Similarity=0.724 Sum_probs=19.1
Q ss_pred CceEeCCc--ch-hhccCCC-CCCCCCCCCCceec
Q 004873 616 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 646 (726)
..+||||. |. .|=-+.= ++. ....++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECc
Confidence 57999999 87 7954431 221 2223789994
No 85
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=44.19 E-value=12 Score=37.36 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCeEEEEEec-------eeEEEEeCCC
Q 004873 88 RRFLIYLQGRDMVAIAKFK-------FWEFYILPPD 116 (726)
Q Consensus 88 ~~f~~~l~~~~~~~~~~~~-------~~~~~~~~~~ 116 (726)
..|.+||+.-.-+|||.+. .+-+|||||-
T Consensus 128 ~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPC 163 (195)
T 1ow1_A 128 AAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPC 163 (195)
T ss_dssp HHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSS
T ss_pred HHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCc
Confidence 5599999999999999998 5999999997
No 86
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=39.99 E-value=14 Score=32.33 Aligned_cols=30 Identities=20% Similarity=0.626 Sum_probs=18.9
Q ss_pred CceEeCCcch---hhccCC-CCCCCCCCCCCceec
Q 004873 616 QEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCd~C~---KWR~Lp-~~~~~~~lp~~W~C~ 646 (726)
..+|+||.|. .|=-+. -++. ....++|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCC-cCCCCCccCC
Confidence 4799999976 895443 1222 2223689985
No 87
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=36.29 E-value=13 Score=29.87 Aligned_cols=31 Identities=26% Similarity=0.759 Sum_probs=19.5
Q ss_pred CCceEeCCc--ch-hhccCC-CCCCCCCCCCCceec
Q 004873 615 DQEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 646 (726)
....|+||. |. .|=-+. -++. ....++|||.
T Consensus 20 ~g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~ 54 (60)
T 2vnf_A 20 YGEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 54 (60)
T ss_dssp CSEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECc
Confidence 357999999 66 785443 1222 2224899995
No 88
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=34.38 E-value=9.5 Score=35.21 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHhhcCC
Q 004873 83 DHNEWRRFLIYLQGRD 98 (726)
Q Consensus 83 ~~~ew~~f~~~l~~~~ 98 (726)
...+|++||||+.+++
T Consensus 86 s~~~WdRFMRFMeRYA 101 (120)
T 2kvo_A 86 SQPEWDRFMRFMERYG 101 (120)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3469999999998775
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=29.86 E-value=12 Score=33.25 Aligned_cols=11 Identities=45% Similarity=1.347 Sum_probs=9.8
Q ss_pred eEeCCcchhhc
Q 004873 618 WVQCNKCRKWR 628 (726)
Q Consensus 618 WVQCd~C~KWR 628 (726)
.||||.|..|=
T Consensus 2 mi~c~~c~~w~ 12 (140)
T 2ku7_A 2 MMQCGKCDRWV 12 (140)
T ss_dssp CCCCSCCSSCH
T ss_pred ccccccCCCcc
Confidence 69999999993
No 90
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=28.49 E-value=22 Score=37.86 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.6
Q ss_pred cceEE---EEEcCeeEe--ecCCceEE
Q 004873 546 NCGIF---LYWHGRLIE--DEGNGLVW 567 (726)
Q Consensus 546 ~~G~~---VYh~NRLIk--~~g~GVVG 567 (726)
.+|+- +|.+|+|++ ..|.|.+|
T Consensus 115 iDGlaisL~Ye~G~Lv~a~TRGDG~~G 141 (322)
T 3uq8_A 115 LDGLAVSILYVNGELTQAATRGDGTTG 141 (322)
T ss_dssp ESSEEEEEEEETTEEEEEEECTTSSEE
T ss_pred eceEEEEEEEeCCEEEEEEecCCCccc
Confidence 35655 599999999 89999999
No 91
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=27.83 E-value=23 Score=37.88 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=18.8
Q ss_pred cceEEE---EEcCeeEe--ecCCceEE
Q 004873 546 NCGIFL---YWHGRLIE--DEGNGLVW 567 (726)
Q Consensus 546 ~~G~~V---Yh~NRLIk--~~g~GVVG 567 (726)
.+|+-| |.+|+|++ ..|.|.+|
T Consensus 121 iDGlaisL~Ye~G~Lv~a~TRGDG~~G 147 (332)
T 1ta8_A 121 IDGLAISLRYENGVFVRGATRGDGTVG 147 (332)
T ss_dssp ECSEEEEEEEETTEEEEEEECTTSSEE
T ss_pred ecceEEEEEEECCEEEEEEcCCCCccc
Confidence 456664 99999999 89999999
No 92
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=25.54 E-value=27 Score=37.15 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.5
Q ss_pred cceEE---EEEcCeeEe--ecCCceEE
Q 004873 546 NCGIF---LYWHGRLIE--DEGNGLVW 567 (726)
Q Consensus 546 ~~G~~---VYh~NRLIk--~~g~GVVG 567 (726)
.+|+- +|.+|+|++ ..|.|.+|
T Consensus 113 iDGlaisL~Ye~G~Lv~a~TRGDG~~G 139 (318)
T 3jsl_A 113 IDGLAVSLKYVDGYFVQGLTRGDGTTG 139 (318)
T ss_dssp ECSEEEEEEEETTEEEEEEECTTSSEE
T ss_pred ecceEEEEEEECCEEEEEEeCCCCccc
Confidence 35655 499999999 89999999
No 93
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=25.31 E-value=23 Score=37.65 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.7
Q ss_pred cceEEE---EEcCeeEe--ecCCceEE
Q 004873 546 NCGIFL---YWHGRLIE--DEGNGLVW 567 (726)
Q Consensus 546 ~~G~~V---Yh~NRLIk--~~g~GVVG 567 (726)
.+|+-| |.+|+|++ ..|.|.+|
T Consensus 115 iDGlaisL~Ye~G~Lv~a~TRGDG~~G 141 (318)
T 1b04_A 115 IDGLAVSVRYEDGYFVQGATRGDGTTG 141 (318)
T ss_dssp ESSEEEEEEEETTEEEEEEECTTSSCE
T ss_pred cccEEEEEEEECCEEEEEEccCCCccc
Confidence 456664 99999999 89999999
No 94
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.97 E-value=15 Score=30.48 Aligned_cols=31 Identities=23% Similarity=0.587 Sum_probs=19.0
Q ss_pred CCceEeCCcch---hhccCCC-CCCCCCCCCCceec
Q 004873 615 DQEWVQCNKCR---KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCd~C~---KWR~Lp~-~~~~~~lp~~W~C~ 646 (726)
+..+||||.|. .|=-+.= ++. ....++|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~-~~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLT-EAPKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCS-SCCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccC-cCCCCCEECC
Confidence 34899999974 7843321 121 2336799984
Done!