Query 004874
Match_columns 726
No_of_seqs 399 out of 2235
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 14:20:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 5.5E-31 1.2E-35 302.7 12.9 412 226-664 119-606 (775)
2 COG0326 HtpG Molecular chapero 99.9 5.3E-27 1.1E-31 264.8 14.0 172 236-417 8-209 (623)
3 PTZ00130 heat shock protein 90 99.9 1.8E-25 4E-30 259.5 14.1 199 201-417 41-271 (814)
4 PTZ00272 heat shock protein 83 99.9 1.1E-23 2.3E-28 243.8 14.9 169 237-416 7-205 (701)
5 PRK05218 heat shock protein 90 99.9 1.2E-22 2.7E-27 233.3 19.7 308 235-596 6-349 (613)
6 PRK14083 HSP90 family protein; 99.9 1.3E-22 2.8E-27 232.1 13.8 299 237-596 5-329 (601)
7 KOG1845 MORC family ATPases [C 99.9 1.9E-23 4.1E-28 240.9 6.8 311 292-631 1-383 (775)
8 KOG0019 Molecular chaperone (H 99.9 2.3E-22 5.1E-27 224.3 11.2 174 236-420 38-238 (656)
9 KOG0020 Endoplasmic reticulum 99.9 6E-22 1.3E-26 216.0 8.8 161 248-420 89-284 (785)
10 PF13589 HATPase_c_3: Histidin 99.7 1.3E-17 2.9E-22 157.5 3.0 102 255-361 3-105 (137)
11 PF07496 zf-CW: CW-type Zinc F 99.6 4.4E-16 9.5E-21 124.9 1.1 45 616-660 1-49 (50)
12 TIGR00585 mutl DNA mismatch re 99.4 3.4E-12 7.4E-17 136.0 13.7 139 236-387 3-148 (312)
13 COG0323 MutL DNA mismatch repa 99.3 6.2E-12 1.3E-16 146.0 11.6 139 236-387 4-149 (638)
14 PRK00095 mutL DNA mismatch rep 99.2 9.1E-11 2E-15 136.0 12.6 138 236-387 3-147 (617)
15 COG1389 DNA topoisomerase VI, 99.1 1.8E-10 3.8E-15 127.1 10.3 138 249-391 31-183 (538)
16 KOG1979 DNA mismatch repair pr 98.9 4.8E-09 1E-13 118.3 9.8 141 235-387 7-153 (694)
17 KOG1978 DNA mismatch repair pr 98.9 3.8E-09 8.3E-14 121.1 8.7 137 238-386 3-145 (672)
18 TIGR01052 top6b DNA topoisomer 98.7 1.7E-07 3.6E-12 106.3 13.1 132 253-389 27-172 (488)
19 PRK04184 DNA topoisomerase VI 98.7 1.7E-07 3.7E-12 107.1 12.8 133 255-390 37-183 (535)
20 PRK14868 DNA topoisomerase VI 98.6 1.5E-07 3.2E-12 110.5 11.4 130 254-389 46-189 (795)
21 PRK05559 DNA topoisomerase IV 98.5 7E-07 1.5E-11 104.4 11.5 123 253-389 36-176 (631)
22 TIGR01055 parE_Gneg DNA topois 98.3 2.1E-06 4.5E-11 100.3 10.3 121 255-389 31-169 (625)
23 PRK14867 DNA topoisomerase VI 98.3 2.8E-06 6.2E-11 99.2 10.5 94 255-353 37-140 (659)
24 PF02518 HATPase_c: Histidine 98.2 1.3E-06 2.7E-11 78.2 4.0 88 254-349 5-97 (111)
25 PRK05644 gyrB DNA gyrase subun 98.2 5.5E-06 1.2E-10 97.1 10.3 120 255-388 38-173 (638)
26 TIGR01059 gyrB DNA gyrase, B s 98.2 5.1E-06 1.1E-10 97.6 9.5 123 254-390 30-168 (654)
27 PRK14939 gyrB DNA gyrase subun 98.2 1.4E-05 3.1E-10 94.9 12.9 119 255-389 38-174 (756)
28 smart00433 TOP2c Topoisomerase 98.1 7.9E-06 1.7E-10 95.1 10.1 116 258-388 5-138 (594)
29 KOG1977 DNA mismatch repair pr 97.9 1.1E-05 2.3E-10 93.4 4.1 137 240-387 6-149 (1142)
30 TIGR01058 parE_Gpos DNA topois 97.3 0.00098 2.1E-08 78.5 10.6 121 255-389 35-172 (637)
31 cd00075 HATPase_c Histidine ki 97.3 0.00086 1.9E-08 56.0 7.2 85 256-349 2-92 (103)
32 smart00387 HATPase_c Histidine 97.2 0.00072 1.6E-08 57.5 6.1 74 255-336 6-81 (111)
33 COG3290 CitA Signal transducti 97.2 0.00071 1.5E-08 77.4 7.0 85 253-349 426-518 (537)
34 PRK10604 sensor protein RstB; 97.1 0.0013 2.8E-08 72.8 8.3 88 254-349 319-410 (433)
35 COG0187 GyrB Type IIA topoisom 97.0 0.0026 5.7E-08 74.0 9.5 120 257-390 39-176 (635)
36 PHA02569 39 DNA topoisomerase 97.0 0.002 4.3E-08 75.6 8.6 118 257-389 48-185 (602)
37 PRK09470 cpxA two-component se 96.9 0.0028 6.1E-08 69.1 8.2 87 255-348 354-443 (461)
38 PRK09467 envZ osmolarity senso 96.8 0.0033 7.2E-08 68.4 8.4 72 254-334 331-402 (435)
39 PRK10364 sensor protein ZraS; 96.7 0.0039 8.5E-08 69.0 8.2 83 254-349 348-435 (457)
40 PRK09303 adaptive-response sen 96.7 0.0053 1.1E-07 67.2 8.8 90 255-350 273-365 (380)
41 TIGR01386 cztS_silS_copS heavy 96.7 0.0056 1.2E-07 66.4 8.9 75 254-335 353-429 (457)
42 PRK10755 sensor protein BasS/P 96.7 0.0035 7.6E-08 66.8 6.9 85 254-349 247-336 (356)
43 COG0642 BaeS Signal transducti 96.7 0.003 6.6E-08 63.3 5.9 60 253-318 227-287 (336)
44 PRK11086 sensory histidine kin 96.6 0.0063 1.4E-07 67.9 8.9 81 255-348 434-521 (542)
45 TIGR02938 nifL_nitrog nitrogen 96.6 0.0049 1.1E-07 66.9 7.5 86 255-348 388-480 (494)
46 TIGR02966 phoR_proteo phosphat 96.6 0.0088 1.9E-07 61.4 8.8 89 254-349 229-322 (333)
47 PRK10549 signal transduction h 96.5 0.0084 1.8E-07 65.8 8.6 88 255-349 353-445 (466)
48 PRK11006 phoR phosphate regulo 96.5 0.0071 1.5E-07 66.6 7.6 87 254-348 317-409 (430)
49 PTZ00109 DNA gyrase subunit b; 96.4 0.0053 1.1E-07 74.3 6.9 120 256-389 131-307 (903)
50 PRK11100 sensory histidine kin 96.3 0.011 2.3E-07 64.5 8.2 87 254-348 368-459 (475)
51 PRK15053 dpiB sensor histidine 96.3 0.01 2.2E-07 66.9 8.0 71 255-335 433-509 (545)
52 PTZ00108 DNA topoisomerase 2-l 96.3 0.0098 2.1E-07 75.2 8.2 124 254-390 57-204 (1388)
53 PLN03128 DNA topoisomerase 2; 96.3 0.012 2.6E-07 73.4 8.9 124 254-390 52-196 (1135)
54 TIGR02916 PEP_his_kin putative 96.2 0.01 2.2E-07 70.0 7.3 82 255-349 580-667 (679)
55 PRK11360 sensory histidine kin 96.1 0.017 3.6E-07 64.3 8.5 83 255-349 501-588 (607)
56 PRK10815 sensor protein PhoQ; 96.0 0.017 3.6E-07 65.7 7.9 70 255-335 379-448 (485)
57 PRK15347 two component system 95.8 0.026 5.5E-07 67.8 8.5 87 254-351 513-603 (921)
58 PRK10337 sensor protein QseC; 95.8 0.023 5E-07 62.3 7.4 82 255-349 353-438 (449)
59 COG4191 Signal transduction hi 95.6 0.017 3.7E-07 67.0 5.8 57 254-316 497-558 (603)
60 PLN03237 DNA topoisomerase 2; 95.6 0.029 6.4E-07 71.1 8.3 125 255-390 78-221 (1465)
61 PRK11091 aerobic respiration c 95.5 0.035 7.6E-07 66.0 8.2 92 255-351 399-494 (779)
62 TIGR03785 marine_sort_HK prote 95.4 0.044 9.5E-07 65.4 8.3 89 254-349 597-690 (703)
63 KOG0787 Dehydrogenase kinase [ 95.2 0.069 1.5E-06 59.4 8.5 74 255-334 261-349 (414)
64 PRK09835 sensor kinase CusS; P 95.2 0.041 8.9E-07 60.6 6.8 87 254-348 375-467 (482)
65 PRK13837 two-component VirA-li 95.1 0.041 8.9E-07 66.4 7.3 90 255-351 561-664 (828)
66 TIGR01925 spIIAB anti-sigma F 95.1 0.077 1.7E-06 49.4 7.4 45 254-304 39-88 (137)
67 PRK11073 glnL nitrogen regulat 95.0 0.059 1.3E-06 56.9 7.2 88 255-349 238-335 (348)
68 PRK11466 hybrid sensory histid 94.9 0.069 1.5E-06 64.4 8.2 87 254-352 561-652 (914)
69 TIGR02956 TMAO_torS TMAO reduc 94.7 0.074 1.6E-06 64.4 7.9 88 254-351 579-672 (968)
70 PRK11107 hybrid sensory histid 94.7 0.081 1.7E-06 63.5 8.1 95 255-352 409-508 (919)
71 PRK10490 sensor protein KdpD; 94.2 0.087 1.9E-06 64.6 7.0 88 254-350 778-870 (895)
72 PRK10841 hybrid sensory kinase 94.1 0.12 2.6E-06 63.7 8.0 89 255-351 563-656 (924)
73 COG3850 NarQ Signal transducti 93.7 0.13 2.8E-06 59.5 6.7 73 255-350 482-556 (574)
74 PRK04069 serine-protein kinase 93.7 0.094 2E-06 51.2 4.9 84 255-348 43-131 (161)
75 PF13581 HATPase_c_2: Histidin 93.4 0.18 4E-06 46.1 6.0 78 254-346 31-113 (125)
76 PRK10618 phosphotransfer inter 93.4 0.22 4.8E-06 61.3 8.4 92 255-352 566-662 (894)
77 PRK13557 histidine kinase; Pro 93.3 0.27 5.8E-06 54.7 8.3 92 255-351 278-383 (540)
78 PRK10547 chemotaxis protein Ch 93.2 0.22 4.8E-06 59.5 7.8 87 257-351 388-512 (670)
79 PRK03660 anti-sigma F factor; 93.1 0.34 7.5E-06 45.5 7.5 45 254-304 39-88 (146)
80 PRK09959 hybrid sensory histid 93.0 0.25 5.5E-06 61.6 8.4 94 254-351 828-925 (1197)
81 TIGR01924 rsbW_low_gc serine-p 92.7 0.18 3.9E-06 49.4 5.2 85 254-348 42-131 (159)
82 COG4585 Signal transduction hi 92.3 0.14 3.1E-06 55.7 4.3 48 253-306 278-326 (365)
83 COG0643 CheA Chemotaxis protei 90.8 0.68 1.5E-05 55.9 8.2 101 236-352 422-563 (716)
84 PRK11644 sensory histidine kin 90.6 0.27 5.9E-06 56.3 4.5 45 255-305 411-456 (495)
85 PRK10600 nitrate/nitrite senso 90.5 0.27 5.9E-06 56.6 4.4 46 254-305 469-515 (569)
86 COG3920 Signal transduction hi 90.2 0.34 7.3E-06 50.3 4.3 46 255-305 123-174 (221)
87 PF07744 SPOC: SPOC domain; I 90.2 0.17 3.6E-06 46.5 1.9 45 70-114 66-119 (119)
88 COG2205 KdpD Osmosensitive K+ 89.9 0.88 1.9E-05 55.2 8.0 59 256-318 777-836 (890)
89 COG2972 Predicted signal trans 88.7 0.63 1.4E-05 52.8 5.5 54 254-311 350-407 (456)
90 PRK13560 hypothetical protein; 88.6 0.49 1.1E-05 55.4 4.7 45 256-305 713-762 (807)
91 COG5002 VicK Signal transducti 86.6 0.7 1.5E-05 51.5 4.0 71 256-334 344-417 (459)
92 COG2172 RsbW Anti-sigma regula 85.6 1.8 3.9E-05 42.3 6.0 83 253-349 39-127 (146)
93 COG5000 NtrY Signal transducti 82.9 1.7 3.6E-05 51.5 5.1 52 255-312 601-661 (712)
94 COG4192 Signal transduction hi 80.9 2.9 6.3E-05 48.2 5.9 58 254-316 564-625 (673)
95 PRK13559 hypothetical protein; 80.2 1.8 3.9E-05 46.3 3.9 47 255-305 268-319 (361)
96 PRK10935 nitrate/nitrite senso 79.0 2.4 5.2E-05 48.1 4.7 46 255-305 472-518 (565)
97 smart00249 PHD PHD zinc finger 75.1 2.5 5.3E-05 31.7 2.3 33 614-646 10-45 (47)
98 COG4251 Bacteriophytochrome (l 73.1 5.3 0.00012 47.6 5.4 70 234-312 619-691 (750)
99 COG4564 Signal transduction hi 65.2 14 0.00031 41.3 6.3 46 258-309 363-409 (459)
100 COG3851 UhpB Signal transducti 62.4 8.9 0.00019 43.3 4.2 46 254-305 410-456 (497)
101 COG3852 NtrB Signal transducti 58.1 14 0.00031 40.9 4.8 58 255-312 242-309 (363)
102 COG2865 Predicted transcriptio 49.8 15 0.00032 42.7 3.4 72 253-334 269-351 (467)
103 KOG0355 DNA topoisomerase type 42.0 56 0.0012 40.4 6.6 46 254-307 53-102 (842)
104 PRK13610 photosystem II reacti 38.3 13 0.00027 35.4 0.5 17 82-98 91-107 (113)
105 TIGR03047 PS_II_psb28 photosys 36.5 16 0.00034 34.6 0.9 17 82-98 84-100 (109)
106 COG3275 LytS Putative regulato 36.2 31 0.00067 40.4 3.2 45 255-305 457-507 (557)
107 PF03912 Psb28: Psb28 protein; 35.4 14 0.00031 34.9 0.4 15 84-98 86-100 (108)
108 PLN00039 photosystem II reacti 34.4 18 0.0004 34.3 0.9 17 82-98 85-101 (111)
109 PRK13612 photosystem II reacti 33.4 20 0.00042 34.3 0.9 17 82-98 87-103 (113)
110 PRK13611 photosystem II reacti 32.7 21 0.00044 33.7 0.9 17 82-98 80-96 (104)
111 PF00183 HSP90: Hsp90 protein; 32.6 12 0.00027 43.9 -0.6 26 393-418 1-27 (531)
112 CHL00128 psbW photosystem II p 32.2 21 0.00045 34.1 0.9 17 82-98 87-103 (113)
113 PF00628 PHD: PHD-finger; Int 28.9 27 0.00058 27.5 0.9 34 613-646 9-46 (51)
114 cd00594 KU Ku-core domain; inc 26.8 69 0.0015 33.7 3.8 67 49-116 87-161 (272)
115 smart00559 Ku78 Ku70 and Ku80 24.3 83 0.0018 30.4 3.5 66 50-116 35-109 (140)
116 KOG1973 Chromatin remodeling p 21.6 42 0.0009 36.2 1.0 29 617-646 231-263 (274)
117 PF04008 Adenosine_kin: Adenos 21.3 49 0.0011 33.1 1.3 12 544-555 118-129 (155)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=5.5e-31 Score=302.70 Aligned_cols=412 Identities=21% Similarity=0.248 Sum_probs=279.5
Q ss_pred eeccCCCCceeeecCHHHHHHhhccccCCHHHHHHHHHHccccc---CCCccEEEEEEcccccCCCCcCEEEEE-----e
Q 004874 226 VKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-----D 297 (726)
Q Consensus 226 ~~~~~~~~~~~~~v~pk~L~slstsh~~~pf~ALaELIDNA~DA---gAt~V~I~I~~~~d~~~~~~~~~L~I~-----D 297 (726)
+.+.+.++-.++++||+|||+++|+| +|.++|++||||||+|. +++.+.|+ .+ +...+.....++|. |
T Consensus 119 ~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd--~I-~p~~d~~i~a~~v~~~~~s~ 194 (775)
T KOG1845|consen 119 VIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVD--YI-NPVMDIFIRALVVQLKRISD 194 (775)
T ss_pred ceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEee--ee-cccccccceeEEeeccceec
Confidence 35555556699999999999999999 79999999999999998 45664443 21 22222224555655 7
Q ss_pred CCCCCCHHhHHhhhhcccCCCCCCCCCccccccceeeeecccccCeEEEEEeeC------CCcceEEEEeeec--CCCce
Q 004874 298 DGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN--QGKDN 369 (726)
Q Consensus 298 NG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~------g~~si~~ls~Sf~--eG~~~ 369 (726)
||+||.++-+..++.+|++.+. +....+||||+||+++.|++|.+++|++|.. .++++++++++|+ ++.++
T Consensus 195 ~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d 273 (775)
T KOG1845|consen 195 DGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRD 273 (775)
T ss_pred cccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCc
Confidence 7999999999999999998875 4568999999999999999999999999943 2568999999995 57889
Q ss_pred EEecC----ccCCCC---CcEEEEEecCccchhhHHhH-----HHHHhhCCCCchh--HHHHh-h----------ccC-C
Q 004874 370 LEIPI----VSYYRK---GQFMELDTVVQSEATAKYNL-----KSIKEFSPFNKYL--IGEKA-G----------LFQ-D 423 (726)
Q Consensus 370 i~VPi----~~~e~~---GT~I~l~lk~~se~~~~~~L-----e~I~KYSpF~s~p--I~e~~-~----------~~~-~ 423 (726)
+++|+ ...+.. -..|.. +... .|..++ +.+.+|+||.+.. +.+.. . ++. .
T Consensus 274 ~iv~~~~i~~~~e~~~~~~~~i~~--~s~~--~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~ 349 (775)
T KOG1845|consen 274 FIVPMRLIKMDYEKSDQLWQGILY--KSGV--DWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIM 349 (775)
T ss_pred eeEecchhhhhhhcccccccceee--cccc--ccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhc
Confidence 99999 544431 122222 2111 233333 3499999999952 22200 0 011 3
Q ss_pred CcCCcEEEEEccccC--CCc-eeEeeeCCCCCC-C----cccc-cceeeccccccCCCccccceeeehhhhhccccce--
Q 004874 424 KCTGTQIYIWNLDQW--GSN-YCLEWDNGLNGG-S----SFHQ-GDILIRSRRIRSRPGQISQKVRSRPLAKSLNKTC-- 492 (726)
Q Consensus 424 ~~~GTrIIIyNLr~~--~~~-~ELDF~td~~~~-~----S~~~-~dI~ir~~r~~~r~~q~~~kVk~r~iak~L~~~~-- 492 (726)
..+||.+|+||+++| ..+ .|+||+.+.+.- + +++. ..|.+...+...+....++++.+..+....+++.
T Consensus 350 ~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~ 429 (775)
T KOG1845|consen 350 NKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPWTYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEI 429 (775)
T ss_pred cCCCceeeeechhhhcccccceeeccccCcccccccchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHH
Confidence 579999999999655 333 999999986311 1 1111 3454443333332233344444444433333221
Q ss_pred eeeccc-------ccceEEEEEeeeccccccc-cceEEEEeechhhh----HHHhhccccccCCCCcceEEEEecccccc
Q 004874 493 VETGII-------MGKSAHLTLGRCQLEWEQM-NCGIFLYWHGRLIE----AYKRVGGMIHNGDTGRGVIGVIDVSDLMD 560 (726)
Q Consensus 493 ~~~~~~-------~~k~v~itfGfn~~~~~r~-~~G~~vYhkNRLIk----~y~rVg~ql~~~~~GrGVIGVvE~n~lv~ 560 (726)
.+.+.. --..+....||.+.++++. ..|++|||++|||+ ++||.++. .+..|+||++++++||
T Consensus 430 ~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~--~~s~~~~~~~il~~n~--- 504 (775)
T KOG1845|consen 430 LYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDNA--TGSLGQAVIPILVGNF--- 504 (775)
T ss_pred hcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhcccceeeecCC--Cccccccccceecccc---
Confidence 111111 1123445678888886664 67999999999999 99999998 5689999999999984
Q ss_pred CCCCcccccCCCcCccCchhHHHHHHHHhHHHHHHHhhhccccccccc---cCCCC-----CCCceecCccchhhccCCC
Q 004874 561 EGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKD---GALYK-----PDQEWVQCNKCRKWRMLDP 632 (726)
Q Consensus 561 ~p~g~v~PtHNKQdFe~t~~y~rLe~~Lg~~l~~YW~~~~~~l~~~~~---~~~~~-----~~~~WVQCD~ClKWR~LP~ 632 (726)
++|+|++|+|++|-.-++++.++.++++.||..+++.++.... ...+. ....=-+| .+=
T Consensus 505 -----~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~~~~~~Ke~~~~~~---~~~----- 571 (775)
T KOG1845|consen 505 -----VETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKERESTTTVVKEEKPENN---HLS----- 571 (775)
T ss_pred -----cccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhhhcccceeecccccccc---hhc-----
Confidence 4689999999999999999999999999999999988865411 11100 01111122 111
Q ss_pred CCCCCCCCCCceecCCC---CCCCCCCCcccccCC
Q 004874 633 GFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG 664 (726)
Q Consensus 633 ~~~~~~lp~~W~C~mNp---~~~sC~~pEe~~~~~ 664 (726)
......--..|+|..++ .++.|+-+-...+.+
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
T KOG1845|consen 572 SSKRTQRRKSTGRAISVAVEKFNLRSGPNGRGQID 606 (775)
T ss_pred chhccccccccccccccchhhhccccccCCcCCcc
Confidence 11223456789999998 467777666555544
No 2
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-27 Score=264.81 Aligned_cols=172 Identities=25% Similarity=0.346 Sum_probs=142.0
Q ss_pred eeecCHH-HHHHhhccccCCHHHHHHHHHHcccccC----------------CCccEEEEEEcccccCCCCcCEEEEEeC
Q 004874 236 FVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDD 298 (726)
Q Consensus 236 ~~~v~pk-~L~slstsh~~~pf~ALaELIDNA~DAg----------------At~V~I~I~~~~d~~~~~~~~~L~I~DN 298 (726)
.|+++-+ .|+.+..+.|+....||||||+||.||. ...+.|.|.. ++...+|+|.||
T Consensus 8 ~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~------Dk~~kTLtI~DN 81 (623)
T COG0326 8 GFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF------DKDNKTLTISDN 81 (623)
T ss_pred hhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE------cccCCEEEEEeC
Confidence 3555544 5566688899999999999999999993 1356666662 235789999999
Q ss_pred CCCCCHHhHHhhhh-cccCCC--------CC-CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCc
Q 004874 299 GHGMTHQDVVRMTY-FGHKQP--------DA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 368 (726)
Q Consensus 299 G~GMt~eeL~~~l~-FG~S~K--------~~-~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~ 368 (726)
|+|||++|++++|+ ++.|.. .. ++...||||||||||||| |+++|+|.||+.+... ++.|.+ +|.+
T Consensus 82 GIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~-~~~W~S--~g~g 157 (623)
T COG0326 82 GIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDE-AYHWES--DGEG 157 (623)
T ss_pred CCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCc-ceEEEE--cCCC
Confidence 99999999999987 333321 11 478999999999999999 9999999999999644 449998 8999
Q ss_pred eEEecCccCCCC-CcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHHH
Q 004874 369 NLEIPIVSYYRK-GQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 369 ~i~VPi~~~e~~-GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e~ 417 (726)
+|+|...+.+.+ ||+|+||++++. +|+.+++|+. |+|||.|+.+||...
T Consensus 158 ~ytv~~~~~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~ 209 (623)
T COG0326 158 EYTVEDIDKEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIE 209 (623)
T ss_pred ceEEeeccCCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEe
Confidence 999988888885 999999999875 7999999977 999999999999844
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=99.92 E-value=1.8e-25 Score=259.47 Aligned_cols=199 Identities=23% Similarity=0.316 Sum_probs=155.1
Q ss_pred CCCccccCCCCCcccccCCCCCCcceeccCCCCceeeecCHH-HHHHhhccccCCHHHHHHHHHHcccccCC--------
Q 004874 201 FSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKA-------- 271 (726)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~pk-~L~slstsh~~~pf~ALaELIDNA~DAgA-------- 271 (726)
-.|.|-.|.-|-+.|+++-. | +.......|++.-+ .|+.+..+.|+.+..||||||+||+||.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~--~-----~~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt 113 (814)
T PTZ00130 41 EKEEVKKDRDNIPEIEDGEK--P-----TSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLS 113 (814)
T ss_pred CcchhhcccccCcccccCCC--C-----CcccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcC
Confidence 34666677777776665432 2 22233455777655 56666899999999999999999999964
Q ss_pred --------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCC--------C-CCCCCcccccccee
Q 004874 272 --------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADDPNRIGRFGVGF 333 (726)
Q Consensus 272 --------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K--------~-~~d~~~IGqFGvGF 333 (726)
+.+.|.|.. +....+|+|.|||+|||.++|.++|+ +++|.. . ..+...||||||||
T Consensus 114 ~~~~~~~~~~~~I~I~~------D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGF 187 (814)
T PTZ00130 114 DESVLGEEKKLEIRISA------NKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGF 187 (814)
T ss_pred CchhcCCCCCceEEEEE------CCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccch
Confidence 366777763 23467999999999999999999876 555431 1 23567999999999
Q ss_pred eeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCccC---CCCCcEEEEEecCcc-chhhHHhHHH-HHhhCC
Q 004874 334 KTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY---YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSP 408 (726)
Q Consensus 334 KSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~~---e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSp 408 (726)
||+|| +|++|.|.||+.+ ..++.|.+ +|.+.|.|...+. ..+||+|+|||+++. +|+..+.|+. |+|||.
T Consensus 188 YSaFm-VAdkV~V~Trs~~--~~~~~W~s--~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~ 262 (814)
T PTZ00130 188 YSAFL-VADKVIVYTKNNN--DEQYIWES--TADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQ 262 (814)
T ss_pred hheee-ecCEEEEEEcCCC--CceEEEEE--CCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhc
Confidence 99999 9999999999877 34789998 7778888866443 369999999999876 7888999977 999999
Q ss_pred CCchhHHHH
Q 004874 409 FNKYLIGEK 417 (726)
Q Consensus 409 F~s~pI~e~ 417 (726)
|+.+||+..
T Consensus 263 fI~~PI~l~ 271 (814)
T PTZ00130 263 FIQYPIYLL 271 (814)
T ss_pred cCCCCEEEc
Confidence 999999853
No 4
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.90 E-value=1.1e-23 Score=243.81 Aligned_cols=169 Identities=23% Similarity=0.290 Sum_probs=135.7
Q ss_pred eecCH-HHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEEEeCC
Q 004874 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (726)
Q Consensus 237 ~~v~p-k~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I~DNG 299 (726)
|++.- +.|+.+..+.|+.+..||||||+||.||.+ ..+.|.|.. + .+..+|+|.|||
T Consensus 7 Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~--d----~~~~~L~I~DnG 80 (701)
T PTZ00272 7 FQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP--D----KENKTLTVEDNG 80 (701)
T ss_pred cHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE--c----CCCCEEEEEECC
Confidence 45543 456666889999999999999999999952 245666652 2 345799999999
Q ss_pred CCCCHHhHHhhhh-cccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceE
Q 004874 300 HGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (726)
Q Consensus 300 ~GMt~eeL~~~l~-FG~S~K--------~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i 370 (726)
+||+.+||.++|+ ++.|.. ...+...||||||||||+|| +|++|.|.||+.+. .++.|.+ .|.+.|
T Consensus 81 iGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~--~~~~W~s--~~~g~y 155 (701)
T PTZ00272 81 IGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSD--ESYVWES--SAGGTF 155 (701)
T ss_pred CCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCC--ceEEEEE--CCCCcE
Confidence 9999999999876 555422 22356799999999999999 99999999998764 5899998 777788
Q ss_pred EecCccC--CCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHH
Q 004874 371 EIPIVSY--YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 371 ~VPi~~~--e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e 416 (726)
+|...+. ..+||+|+||++++. +|+.++.|+. |+|||.|+.+||+.
T Consensus 156 ~i~~~~~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 156 TITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred EEEeCCCCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 8754432 369999999999876 7888899977 99999999999975
No 5
>PRK05218 heat shock protein 90; Provisional
Probab=99.89 E-value=1.2e-22 Score=233.28 Aligned_cols=308 Identities=20% Similarity=0.184 Sum_probs=195.4
Q ss_pred eeeecCHH-HHHHhhccccCCHHHHHHHHHHcccccC----------------CCccEEEEEEcccccCCCCcCEEEEEe
Q 004874 235 NFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIID 297 (726)
Q Consensus 235 ~~~~v~pk-~L~slstsh~~~pf~ALaELIDNA~DAg----------------At~V~I~I~~~~d~~~~~~~~~L~I~D 297 (726)
..|+++-+ .|..++.+.|+++..||||||+||+||. +....|.|.. + .+...|+|.|
T Consensus 6 ~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d----~~~~~i~I~D 79 (613)
T PRK05218 6 GEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF--D----KEARTLTISD 79 (613)
T ss_pred eehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE--c----CCCCeEEEEE
Confidence 34555544 6677788999999999999999999993 3455666652 1 2345799999
Q ss_pred CCCCCCHHhHHhhhh-cccCCC----------CCCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCC
Q 004874 298 DGHGMTHQDVVRMTY-FGHKQP----------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 366 (726)
Q Consensus 298 NG~GMt~eeL~~~l~-FG~S~K----------~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG 366 (726)
||+||+.+++...++ .+.|.+ ...+...||+||+||+|++| +|++|+|.||+.+....++.|.+ +|
T Consensus 80 nG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~~~~~~~w~~--~g 156 (613)
T PRK05218 80 NGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM-VADKVTVITRSAGPAAEAVRWES--DG 156 (613)
T ss_pred CCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh-ccCEEEEEEcCCCCCCceEEEEE--eC
Confidence 999999999998764 666532 11256899999999999877 99999999999774556889987 66
Q ss_pred CceEEecCccCCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHHHhhccCCCcCCcEEEEEccccCCCceeE
Q 004874 367 KDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCL 444 (726)
Q Consensus 367 ~~~i~VPi~~~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e~~~~~~~~~~GTrIIIyNLr~~~~~~EL 444 (726)
...+.+...+...+||+|+++++++. ++.+.+.++. |.+||.|..+||...-.. ....++...+|.....
T Consensus 157 ~~~~~i~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~~--~~~in~~~~~w~~~~~------ 228 (613)
T PRK05218 157 EGEYTIEEIEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKEE--EETINSASALWTRSKS------ 228 (613)
T ss_pred CceeEEeECCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEeccc--ceeecCCccceecCCc------
Confidence 66676655544578999999999875 6777778876 999999999987631100 0012333334422110
Q ss_pred eeeCCCCCCCcccccceeeccccccCCCccccceeeehhhhhccccceeeecccccceEEEEEeeecccc-----ccccc
Q 004874 445 EWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEW-----EQMNC 519 (726)
Q Consensus 445 DF~td~~~~~S~~~~dI~ir~~r~~~r~~q~~~kVk~r~iak~L~~~~~~~~~~~~k~v~itfGfn~~~~-----~r~~~ 519 (726)
+. +-+...+|++.--... ..++ . .+++... .+-.+.-.+++...++ .....
T Consensus 229 ----~i----~~~~~~~fy~~~~~~~----------~~pl----~-~i~~~~e-~~~~~~gll~iP~~~~~~~~~~~~~~ 284 (613)
T PRK05218 229 ----EI----TDEEYKEFYKHLAHDF----------DDPL----F-WIHNNVE-GPFEYTGLLYIPKKAPFDLFNRDRKG 284 (613)
T ss_pred ----cc----cHHHHHHHhhhhcccc----------cCCc----E-EEEcccC-CceEEEEEEEeCCCCccchhhhcccc
Confidence 00 0000111111100000 0000 0 0000000 0011122233321110 12458
Q ss_pred eEEEEeechhhhHH-HhhccccccCCCCcceEEEEeccccccCCCCcccccCCCcCccCchhHHHHHHHHhHHHHHHH
Q 004874 520 GIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYW 596 (726)
Q Consensus 520 G~~vYhkNRLIk~y-~rVg~ql~~~~~GrGVIGVvE~n~lv~~p~g~v~PtHNKQdFe~t~~y~rLe~~Lg~~l~~YW 596 (726)
|+.+|-++|+|.-- +.+-|. .-+=|-||||++.| | |+=.-..|.++..++++-+.|++++.++=
T Consensus 285 ~~~lyvn~v~I~d~~~~lLP~-----wl~Fv~GVVDs~dL--p------lnvSRE~lq~~~~l~~i~~~l~~kv~~~l 349 (613)
T PRK05218 285 GLKLYVKRVFIMDDAEELLPE-----YLRFVKGVIDSEDL--P------LNVSREILQEDRVVKKIRKAITKKVLDEL 349 (613)
T ss_pred cEEEEECcEEeeCchhhhchH-----HHhheEEEeecCCC--C------CccCHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 89999999999763 345554 45567789999976 3 35777789999999999888888776544
No 6
>PRK14083 HSP90 family protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=232.15 Aligned_cols=299 Identities=15% Similarity=0.184 Sum_probs=188.7
Q ss_pred eecCHH-HHHHhhccccCCHHHHHHHHHHcccccCCC----------ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH
Q 004874 237 VRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 237 ~~v~pk-~L~slstsh~~~pf~ALaELIDNA~DAgAt----------~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 305 (726)
|+++.+ .|+.++.+.|+++..||+|||+||+||++. .|.|.+. +.+..+|+|.|||+||+.+
T Consensus 5 Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-------d~~~~~l~I~DnGiGmt~e 77 (601)
T PRK14083 5 FQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-------DAGGGTLIVEDNGIGLTEE 77 (601)
T ss_pred chHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-------cCCCcEEEEEeCCCCCCHH
Confidence 444444 567778889999999999999999999764 4444441 1246899999999999999
Q ss_pred hHHhhh-hcccCCCCC-----CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCc--cC
Q 004874 306 DVVRMT-YFGHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV--SY 377 (726)
Q Consensus 306 eL~~~l-~FG~S~K~~-----~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~--~~ 377 (726)
++.+.+ .+|.|.+.. .+...||+||+||+|+|| +|++|.|.||+.+ ...++.|.+ .+.+.+.+... ..
T Consensus 78 el~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~-~~~~~~W~~--~~~g~y~i~~~~~~~ 153 (601)
T PRK14083 78 EVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAK-DGPAVEWRG--KADGTYSVRKLETER 153 (601)
T ss_pred HHHHHHhhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCC-CCceEEEEE--CCCCceEEEeCCCCC
Confidence 999876 488776632 245789999999999998 9999999999975 356888988 44556666542 34
Q ss_pred CCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHHHhhccCCCcCCcEEEEEccccCCCc----eeEeeeCCCC
Q 004874 378 YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSN----YCLEWDNGLN 451 (726)
Q Consensus 378 e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e~~~~~~~~~~GTrIIIyNLr~~~~~----~ELDF~td~~ 451 (726)
..+||+|+|+++++. ++..++.++. |++||.|+.+||...-. ...-++...+|.....+-. --++|-...-
T Consensus 154 ~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~---~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~ 230 (601)
T PRK14083 154 AEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE---KGGVNETPPPWTRDYPDPETRREALLAYGEELL 230 (601)
T ss_pred CCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc---eeeecCCCCCccCCccccCccHHHHHHHHHHhc
Confidence 469999999998764 6777778866 99999999999984210 0123455555654321100 0011100000
Q ss_pred CCCcccccceeeccccccCCCccccceeeehhhhhccccceeeecccccceEEEEEeeeccccccccceEEEEeechhhh
Q 004874 452 GGSSFHQGDILIRSRRIRSRPGQISQKVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIE 531 (726)
Q Consensus 452 ~~~S~~~~dI~ir~~r~~~r~~q~~~kVk~r~iak~L~~~~~~~~~~~~k~v~itfGfn~~~~~r~~~G~~vYhkNRLIk 531 (726)
...++ .-|.++.. .... ..+.+ |++... .++ ...|+-+|.++=||.
T Consensus 231 ~~~Pl--~~ih~~~e--------------~~~~-----~~~Ly---~iP~~~--~~~--------~~~~v~LY~~rVfI~ 276 (601)
T PRK14083 231 GFTPL--DVIPLDVP--------------SGGL-----EGVAY---VLPYAV--SPA--------ARRKHRVYLKRMLLS 276 (601)
T ss_pred CCCch--heeeeccc--------------chhh-----eEEEE---ecCCCC--Ccc--------ccCceEEEeeeeEee
Confidence 00000 00000000 0000 00000 001111 011 125777888887774
Q ss_pred H-HHhhccccccCCCCcceEEEEeccccccCCCCcccccCCCcCccCchhHHHHHHHHhHHHHHHH
Q 004874 532 A-YKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYW 596 (726)
Q Consensus 532 ~-y~rVg~ql~~~~~GrGVIGVvE~n~lv~~p~g~v~PtHNKQdFe~t~~y~rLe~~Lg~~l~~YW 596 (726)
- .+.+-|. .-+=|=||||++.| | |+=.--.+.+...++++-+.|++++.+|=
T Consensus 277 d~~~~lLP~-----wl~FvrGVVDS~DL--p------LNvSRE~LQ~~~~l~~ir~~i~kki~~~L 329 (601)
T PRK14083 277 EEAENLLPD-----WAFFVRCVVNTDEL--R------PTASREALYEDDALAAVREELGEAIRKWL 329 (601)
T ss_pred cchhhhhHH-----HHHHheeeeecCCC--C------CccCHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 3 2334333 23456699999976 2 35667778889999988888887776443
No 7
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.9e-23 Score=240.88 Aligned_cols=311 Identities=21% Similarity=0.303 Sum_probs=221.8
Q ss_pred EEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecC--CCce
Q 004874 292 MLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ--GKDN 369 (726)
Q Consensus 292 ~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~e--G~~~ 369 (726)
+|++.|||.||+++++..+..|+. ....||+||+|+|+++|++|+++.++|+..+++++++++++|.+ ..+.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc------cccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 478999999999999999998833 45789999999999999999999999999999999999999964 5678
Q ss_pred EEecCccCCCCCcEEEEEecCccchhhHHhHHHHHhhCCCCch-hHHHHhhccCCCcCCcEEEEEccccC-CCceeEeee
Q 004874 370 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKY-LIGEKAGLFQDKCTGTQIYIWNLDQW-GSNYCLEWD 447 (726)
Q Consensus 370 i~VPi~~~e~~GT~I~l~lk~~se~~~~~~Le~I~KYSpF~s~-pI~e~~~~~~~~~~GTrIIIyNLr~~-~~~~ELDF~ 447 (726)
+++|++.|+.++..|.. . -...++++|.+||+|... -....++.+.+...||.+||+|+++. .+.+++||.
T Consensus 75 vvvP~~t~~~~~~~~~~-~------k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a 147 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVT-E------KFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWA 147 (775)
T ss_pred ceecccccccccccccc-c------ccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccc
Confidence 88999999998877654 1 134578899999999984 11112222223234588888888765 566999998
Q ss_pred CCC------------CCCCcccc-------cceeeccccccCCC-----ccccceeeehhh-------------------
Q 004874 448 NGL------------NGGSSFHQ-------GDILIRSRRIRSRP-----GQISQKVRSRPL------------------- 484 (726)
Q Consensus 448 td~------------~~~~S~~~-------~dI~ir~~r~~~r~-----~q~~~kVk~r~i------------------- 484 (726)
.|. ..+++|-. |||++++..++.+. +.+.++|.....
T Consensus 148 ~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~ 227 (775)
T KOG1845|consen 148 KGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGN 227 (775)
T ss_pred cChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhcc
Confidence 763 11345532 89999988877531 222222211110
Q ss_pred -----hhcccccee--eeccc-----ccceEEEEEeeeccccccccceEEEEeechhhhHHHhhccccccCC-CCcceEE
Q 004874 485 -----AKSLNKTCV--ETGII-----MGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGD-TGRGVIG 551 (726)
Q Consensus 485 -----ak~L~~~~~--~~~~~-----~~k~v~itfGfn~~~~~r~~~G~~vYhkNRLIk~y~rVg~ql~~~~-~GrGVIG 551 (726)
.+.|..+.+ .+... ....|-+..|.+.. +.+ .|+|+|-+ |||+++..++.|+..+. -|.|+.|
T Consensus 228 gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~--~t~-~~d~iv~~-~~i~~~~e~~~~~~~~i~~~s~~~~ 303 (775)
T KOG1845|consen 228 GFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLR--KTG-KRDFIVPM-RLIKMDYEKSDQLWQGILYKSGVDW 303 (775)
T ss_pred ccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeec--ccc-CCceeEec-chhhhhhhcccccccceeecccccc
Confidence 000111110 01000 12355566666653 345 99999999 99999999999998764 4559999
Q ss_pred EEeccccccCCCCcccccCCCcCccCchhHHHHHHHHhHHHHHHHhh--hccccccc-----cccCC-----CCCCCcee
Q 004874 552 VIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDN--KFDSLNVV-----KDGAL-----YKPDQEWV 619 (726)
Q Consensus 552 VvE~n~lv~~p~g~v~PtHNKQdFe~t~~y~rLe~~Lg~~l~~YW~~--~~~~l~~~-----~~~~~-----~~~~~~WV 619 (726)
+++++.. +=|+|.+-..|.+++..|++++.+||+. .|++.... -..+. .+.+....
T Consensus 304 ~~n~~i~------------~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~ 371 (775)
T KOG1845|consen 304 AVNLEIE------------VTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGIL 371 (775)
T ss_pred ceeeeeH------------HHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccce
Confidence 9999743 3358999999999999999999999976 23332211 11223 34477899
Q ss_pred cCccchhhccCC
Q 004874 620 QCNKCRKWRMLD 631 (726)
Q Consensus 620 QCD~ClKWR~LP 631 (726)
|||.|++|+-+|
T Consensus 372 e~df~l~~~~i~ 383 (775)
T KOG1845|consen 372 ELDFDLDPHVIP 383 (775)
T ss_pred eeccccCccccc
Confidence 999999999998
No 8
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.3e-22 Score=224.34 Aligned_cols=174 Identities=27% Similarity=0.327 Sum_probs=140.7
Q ss_pred eeecCHHHHH-HhhccccCCHHHHHHHHHHcccccCC--------------CccEEEEEEcccccCCCCcCEEEEEeCCC
Q 004874 236 FVRADPSYLQ-TLGQAHSGWIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGH 300 (726)
Q Consensus 236 ~~~v~pk~L~-slstsh~~~pf~ALaELIDNA~DAgA--------------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~ 300 (726)
-++..-+-|- .+.-+.|+.-..+|||||+||+||.. +.+.|.|. +| .+..+|+|.|+|+
T Consensus 38 ~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~--~n----k~~~tlti~DtGI 111 (656)
T KOG0019|consen 38 EFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKALPELEIRII--TN----KDKRTITIQDTGI 111 (656)
T ss_pred ehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCccccccceeEEec--cC----CCcceEEEEecCC
Confidence 3444444333 33666777788999999999999942 46677776 33 4678999999999
Q ss_pred CCCHHhHHhhhh---------cccCCC-CCCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceE
Q 004874 301 GMTHQDVVRMTY---------FGHKQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (726)
Q Consensus 301 GMt~eeL~~~l~---------FG~S~K-~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i 370 (726)
|||++||.++++ |....+ ..++.++|||||+|||||+| ++++|.|+||+.+.. ++.|.+ .+.+.+
T Consensus 112 GMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e--~y~Wes--~~~gs~ 186 (656)
T KOG0019|consen 112 GMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE--GLQWTS--NGRGSY 186 (656)
T ss_pred CcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc--ceeeec--CCCCce
Confidence 999999999987 222234 35678899999999999999 999999999999865 888988 677788
Q ss_pred EecCccCCCCCcEEEEEecCc-cchhhHHhHHH-HHhhCCCCchhHHHHhhc
Q 004874 371 EIPIVSYYRKGQFMELDTVVQ-SEATAKYNLKS-IKEFSPFNKYLIGEKAGL 420 (726)
Q Consensus 371 ~VPi~~~e~~GT~I~l~lk~~-se~~~~~~Le~-I~KYSpF~s~pI~e~~~~ 420 (726)
+|-..+...+||+|++|++++ .+|+.+.+++. |+|||.|+++||..+-..
T Consensus 187 ~v~~~~~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~ek 238 (656)
T KOG0019|consen 187 EIAEASGLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGER 238 (656)
T ss_pred EEeeccCccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhhhh
Confidence 887776688999999999985 48999999977 999999999999966544
No 9
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6e-22 Score=215.97 Aligned_cols=161 Identities=23% Similarity=0.325 Sum_probs=127.3
Q ss_pred hccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhh
Q 004874 248 GQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (726)
Q Consensus 248 stsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (726)
-.+.|..-..+|||||+||+||.. ..+.|.|.. +..+..|.|.|.|+|||+++|.++|
T Consensus 89 INSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~------Dke~klLhi~DtGiGMT~edLi~NL 162 (785)
T KOG0020|consen 89 INSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKA------DKEKKLLHITDTGIGMTREDLIKNL 162 (785)
T ss_pred HHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEee------chhhCeeeEecccCCccHHHHHHhh
Confidence 445667788999999999999943 356666652 3467899999999999999999998
Q ss_pred h-cccCC--------CCCC-----CCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCccC
Q 004874 312 Y-FGHKQ--------PDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY 377 (726)
Q Consensus 312 ~-FG~S~--------K~~~-----d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~~ 377 (726)
+ +..|. .... -..+||||||||||||+ +++.|.|+||+++. -.++|.+ .+..+.|...++
T Consensus 163 GTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD--~QyiWES---dan~FsvseDpr 236 (785)
T KOG0020|consen 163 GTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDD--SQYIWES---DANSFSVSEDPR 236 (785)
T ss_pred hhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCc--cceeeec---cCcceeeecCCC
Confidence 7 32221 1111 23799999999999999 99999999999885 3578887 334676655444
Q ss_pred C---CCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHHHhhc
Q 004874 378 Y---RKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGL 420 (726)
Q Consensus 378 e---~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e~~~~ 420 (726)
. ++||.|+|+|+++. +|+++..|+. |+|||.|+++||..|...
T Consensus 237 g~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSK 284 (785)
T KOG0020|consen 237 GNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSK 284 (785)
T ss_pred CCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeecc
Confidence 3 69999999999875 7888888876 999999999999988765
No 10
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.68 E-value=1.3e-17 Score=157.48 Aligned_cols=102 Identities=32% Similarity=0.477 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCC-CCCCcccccccee
Q 004874 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA-DDPNRIGRFGVGF 333 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~-~d~~~IGqFGvGF 333 (726)
+..||+|||+||+||.|+.|.|.|... ..+...|.|.|||.||+.++|..++.+|.+.+.. .+...+|+||+|+
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~-----~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDED-----KKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEE-----TTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcC-----CCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 478999999999999999999999841 1356899999999999999999988898887631 2467899999999
Q ss_pred eeecccccCeEEEEEeeCCCcceEEEEe
Q 004874 334 KTGAMRLGKDALVLTQTADSRSIAFLSQ 361 (726)
Q Consensus 334 KSA~mrLG~~V~V~TK~~g~~si~~ls~ 361 (726)
+.|++.+|+.+.|+|++.+......+..
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred HHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 9999999999999999998755333333
No 11
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.57 E-value=4.4e-16 Score=124.86 Aligned_cols=45 Identities=44% Similarity=1.005 Sum_probs=31.4
Q ss_pred CceecCccchhhccCCCCCCC--CCCCCCceecCCCC--CCCCCCCccc
Q 004874 616 QEWVQCNKCRKWRMLDPGFDT--KSLPVEWFCYMKPF--EGLCDLPEQK 660 (726)
Q Consensus 616 ~~WVQCD~ClKWR~LP~~~~~--~~lp~~W~C~mNp~--~~sC~~pEe~ 660 (726)
+.|||||.|+|||+||.+++. ..+|+.|+|+||++ +++|++|||.
T Consensus 1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee~ 49 (50)
T PF07496_consen 1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEEI 49 (50)
T ss_dssp -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--SS
T ss_pred CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCCCCCCCCCCCcccC
Confidence 379999999999999999887 78999999999985 5999999985
No 12
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=3.4e-12 Score=136.03 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=98.4
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcc
Q 004874 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (726)
Q Consensus 236 ~~~v~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG 314 (726)
..++++...+.+ |.+.+.++..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+.+++..++.-+
T Consensus 3 I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 75 (312)
T TIGR00585 3 IKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEE-------GGLKLIEVSDNGSGIDKEDLPLACERH 75 (312)
T ss_pred CeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCEEEEEEEecCCCCCHHHHHHHhhCC
Confidence 467899999999 455568999999999999999999998888762 234469999999999999999887644
Q ss_pred cCCCCC-----CCCCccccccceeeeecccccCeEEEEEee-CCCcceEEEEeeecCCCceEEecCccCCCCCcEEEEE
Q 004874 315 HKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (726)
Q Consensus 315 ~S~K~~-----~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~-~g~~si~~ls~Sf~eG~~~i~VPi~~~e~~GT~I~l~ 387 (726)
.+.|.. ......|..|.|+.+.+. ++ +++|.||. .+. ..++.+.. +|. .+.-.......+||.|++.
T Consensus 76 ~tsk~~~~~~~~~~~~~G~rG~al~si~~-~s-~~~i~S~~~~~~-~~~~~~~~--~g~-~~~~~~~~~~~~GTtV~v~ 148 (312)
T TIGR00585 76 ATSKIQSFEDLERIETLGFRGEALASISS-VS-RLTITTKTSAAD-GLAWQALL--EGG-MIEEIKPAPRPVGTTVEVR 148 (312)
T ss_pred CcCCCCChhHhhcccccCccchHHHHHHh-hC-cEEEEEeecCCC-cceEEEEE--CCC-cCcccccccCCCccEEEEc
Confidence 443321 234678999999955433 55 89999997 333 34555442 332 1111112234689999875
No 13
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.32 E-value=6.2e-12 Score=146.01 Aligned_cols=139 Identities=20% Similarity=0.294 Sum_probs=99.3
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcc
Q 004874 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (726)
Q Consensus 236 ~~~v~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG 314 (726)
+-.+++...+.+ |...+..|..+|+|||+||+||||++|+|.++ .+|...|.|.|||+||+++|+.-++.=.
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve-------~gG~~~I~V~DNG~Gi~~~Dl~la~~rH 76 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVE-------GGGLKLIRVRDNGSGIDKEDLPLALLRH 76 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEc-------cCCccEEEEEECCCCCCHHHHHHHHhhh
Confidence 567899999999 56677899999999999999999999999988 4577889999999999999999887533
Q ss_pred cCCC--CCCCCCccccccceeeee---cccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCcc-CCCCCcEEEEE
Q 004874 315 HKQP--DADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS-YYRKGQFMELD 387 (726)
Q Consensus 315 ~S~K--~~~d~~~IGqFGvGFKSA---~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~-~e~~GT~I~l~ 387 (726)
.++| ...|...|-.| ||..- ++.-..+++|.||+.+. ..++-+. .+|..-. +.+.+ ....||.|++.
T Consensus 77 aTSKI~~~~DL~~I~Tl--GFRGEAL~SIasVsrlti~Srt~~~-~~~~~~~--~~g~~~~-~~~~p~a~~~GTtVeV~ 149 (638)
T COG0323 77 ATSKIASLEDLFRIRTL--GFRGEALASIASVSRLTITSRTAEA-SEGTQIY--AEGGGME-VTVKPAAHPVGTTVEVR 149 (638)
T ss_pred ccccCCchhHHHHhhcc--CccHHHHHHHHhhheeEEEeecCCc-CceEEEE--ecCCccc-ccccCCCCCCCCEEEeh
Confidence 3333 33455556655 78743 34456899999995543 3333333 2443322 12222 23459999873
No 14
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.19 E-value=9.1e-11 Score=136.04 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=98.1
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcc
Q 004874 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (726)
Q Consensus 236 ~~~v~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG 314 (726)
+..+++.....+ |...+.+|..+|+|||+||+||||+.|.|.+.. ++...|+|.|||.||+.+++..++...
T Consensus 3 I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~-------~g~~~i~V~DnG~Gi~~~~~~~~~~~~ 75 (617)
T PRK00095 3 IQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEE-------GGLKLIRVRDNGCGISKEDLALALARH 75 (617)
T ss_pred ceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEe-------CCeEEEEEEEcCCCCCHHHHHHHhhcc
Confidence 567899999999 566678999999999999999999999999862 356789999999999999999887654
Q ss_pred cCCCCC--CC---CCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCccC-CCCCcEEEEE
Q 004874 315 HKQPDA--DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY-YRKGQFMELD 387 (726)
Q Consensus 315 ~S~K~~--~d---~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~~-e~~GT~I~l~ 387 (726)
.++|-. .| ....|..|.|+.|.+ .++ .++|.||+.+.. .++. ..|..|.- +..... ...||.|++.
T Consensus 76 ~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~vs-~l~i~s~~~~~~-~~~~-~~~~~G~~---~~~~~~~~~~GT~V~v~ 147 (617)
T PRK00095 76 ATSKIASLDDLEAIRTLGFRGEALPSIA-SVS-RLTLTSRTADAA-EGWQ-IVYEGGEI---VEVKPAAHPVGTTIEVR 147 (617)
T ss_pred CCCCCCChhHhhccccCCcchhHHHhhh-hce-EEEEEEecCCCC-ceEE-EEecCCcC---cceecccCCCCCEEEec
Confidence 444422 12 245677777775433 344 899999987542 2332 22444421 111111 3589999874
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.8e-10 Score=127.06 Aligned_cols=138 Identities=21% Similarity=0.233 Sum_probs=104.3
Q ss_pred ccccCCHHHHHHHHHHcccccCC-----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCC
Q 004874 249 QAHSGWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADD 322 (726)
Q Consensus 249 tsh~~~pf~ALaELIDNA~DAgA-----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d 322 (726)
+.-+.++.+.|+|||+||+||.. +.|.|.|+.. +.+...+.|+|||.|++.+.+-+.|+ +-+++|....
T Consensus 31 ~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-----~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~ 105 (538)
T COG1389 31 DGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-----GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRN 105 (538)
T ss_pred CCchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-----CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhh
Confidence 33446788999999999999953 7888888753 35678999999999999999999987 4444443235
Q ss_pred CCccccccceeeee----cccccCeEEEEEeeCCCcceEEEEeeecC-CCceEEecCccCC----CCCcEEEEEecCc
Q 004874 323 PNRIGRFGVGFKTG----AMRLGKDALVLTQTADSRSIAFLSQSLNQ-GKDNLEIPIVSYY----RKGQFMELDTVVQ 391 (726)
Q Consensus 323 ~~~IGqFGvGFKSA----~mrLG~~V~V~TK~~g~~si~~ls~Sf~e-G~~~i~VPi~~~e----~~GT~I~l~lk~~ 391 (726)
.+.-||+|+|.+.| -|..|+.+.|.|.+.++.....++--.+. .++..++....++ -+||.|+++++..
T Consensus 106 ~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~ 183 (538)
T COG1389 106 IQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGV 183 (538)
T ss_pred hhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEeccc
Confidence 67889999999755 35779999999999987777666665543 3445555543332 3899999999764
No 16
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.89 E-value=4.8e-09 Score=118.26 Aligned_cols=141 Identities=21% Similarity=0.346 Sum_probs=105.1
Q ss_pred eeeecCHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhh-h
Q 004874 235 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-Y 312 (726)
Q Consensus 235 ~~~~v~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~ 312 (726)
.+-+++...+..+ |...+..|..||.|||.||+||++|.|.|.+. .+|...|.|.|||.||-++||.-+. .
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk-------~GGLKLlQisDnG~GI~reDl~ilCeR 79 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVK-------DGGLKLLQISDNGSGIRREDLPILCER 79 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEe-------cCCeEEEEEecCCCccchhhhHHHHHH
Confidence 4567889999988 46677899999999999999999999998876 4577888999999999999998765 4
Q ss_pred cccCC-CCCCCCCccccccceee---eecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCccCCCCCcEEEEE
Q 004874 313 FGHKQ-PDADDPNRIGRFGVGFK---TGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (726)
Q Consensus 313 FG~S~-K~~~d~~~IGqFGvGFK---SA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~~e~~GT~I~l~ 387 (726)
|.+|. ....|...|..| ||. .|+++-..+|+|.||.++.....-.+ |.+|.-. .-|-+..-..||.|++.
T Consensus 80 ftTSKL~kFEDL~~lsTy--GFRGEALASiShVA~VtV~TK~~~~~cayras--Y~DGkm~-~~pKpcAgk~GT~I~ve 153 (694)
T KOG1979|consen 80 FTTSKLTKFEDLFSLSTY--GFRGEALASISHVAHVTVTTKTAEGKCAYRAS--YRDGKMI-ATPKPCAGKQGTIITVE 153 (694)
T ss_pred hhhhhcchhHHHHhhhhc--CccHHHHhhhhheeEEEEEEeecCceeeeEEE--eeccccc-cCCCCccCCCceEEEeh
Confidence 76653 233567777777 666 46778889999999998875433333 3354321 12334445689998763
No 17
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.88 E-value=3.8e-09 Score=121.11 Aligned_cols=137 Identities=17% Similarity=0.213 Sum_probs=90.9
Q ss_pred ecCHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccC
Q 004874 238 RADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHK 316 (726)
Q Consensus 238 ~v~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S 316 (726)
+++++..|.+ |.+.+.++..||+|||+||+||||+.|+|.++ +.|...|.|.|||+|++..+..-+-.=-+.
T Consensus 3 ~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~k-------dyG~d~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 3 QIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVK-------DYGSDSIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred CCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecC-------CCCcceEEEecCCCCCCccchhhhhhhhhh
Confidence 5778888999 56666899999999999999999999999987 347899999999999999888764221112
Q ss_pred CC--CCCCCCccccccceeeeec---ccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCccCCCCCcEEEE
Q 004874 317 QP--DADDPNRIGRFGVGFKTGA---MRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 386 (726)
Q Consensus 317 ~K--~~~d~~~IGqFGvGFKSA~---mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~~e~~GT~I~l 386 (726)
+| ...|.. .-+-.||..-+ +.--.+|+|+|++... -+|..|.- ++.+.+.---..-..+||+|.+
T Consensus 76 SKi~~f~Dl~--~l~T~GFRGEALSsLCa~~dv~I~Trt~~~-~vgt~l~~--Dh~G~I~~k~~~ar~~GTTV~v 145 (672)
T KOG1978|consen 76 SKIVSFADLA--VLFTLGFRGEALSSLCALGDVMISTRSHSA-KVGTRLVY--DHDGHIIQKKPVARGRGTTVMV 145 (672)
T ss_pred hcccchhhhh--hhhhhhhHHHHHHhhhhccceEEEEeeccC-ccceeEEE--ccCCceeeeccccCCCCCEEEH
Confidence 22 222333 33344676432 2233778888988732 23333322 3344554222233468999875
No 18
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.67 E-value=1.7e-07 Score=106.25 Aligned_cols=132 Identities=20% Similarity=0.242 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHcccccCCC-----ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCcc
Q 004874 253 GWIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 326 (726)
Q Consensus 253 ~~pf~ALaELIDNA~DAgAt-----~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~I 326 (726)
..+..++.|||+||+||.++ .|.|.+... +.+...|+|.|||.||+++++..++. |..+.|........
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccC
Confidence 45679999999999999875 566666521 11234799999999999999999876 55555532234567
Q ss_pred ccccceeeeecc----cccCeEEEEEeeCCCcceEEEEeeec--CCCceEEecC-ccCC-CCCcEEEEEec
Q 004874 327 GRFGVGFKTGAM----RLGKDALVLTQTADSRSIAFLSQSLN--QGKDNLEIPI-VSYY-RKGQFMELDTV 389 (726)
Q Consensus 327 GqFGvGFKSA~m----rLG~~V~V~TK~~g~~si~~ls~Sf~--eG~~~i~VPi-~~~e-~~GT~I~l~lk 389 (726)
|.+|+|+.++.+ ..|+.+.|.|+..+......+..... ...+.+.-.. .... .+||.|++...
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V~v~f~ 172 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRIELEFK 172 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEEEEEEC
Confidence 999999976543 33566999999886533222332221 1112221111 1112 26999998753
No 19
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.66 E-value=1.7e-07 Score=107.13 Aligned_cols=133 Identities=20% Similarity=0.305 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcccccCCC-----ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCcccc
Q 004874 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt-----~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGq 328 (726)
+..+|.|||+||+||.++ .|.|.+... + .+.+...|.|.|||.||+++++..++. |..+.+........|+
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~-~--~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~ 113 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRV-D--EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQ 113 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc-c--CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCC
Confidence 578999999999999865 466666521 0 022356799999999999999999875 4344332111456799
Q ss_pred ccceeeeecc----cccCeEEEEEeeCCCcceEEEEeeecC-CCceEEecC---ccCCCCCcEEEEEecC
Q 004874 329 FGVGFKTGAM----RLGKDALVLTQTADSRSIAFLSQSLNQ-GKDNLEIPI---VSYYRKGQFMELDTVV 390 (726)
Q Consensus 329 FGvGFKSA~m----rLG~~V~V~TK~~g~~si~~ls~Sf~e-G~~~i~VPi---~~~e~~GT~I~l~lk~ 390 (726)
+|+|+.++.+ ..|..+.|.|+..+......+...... .++..++.. .....+||.|++.+..
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~l~~ 183 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELEIEG 183 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEEECC
Confidence 9999976543 236679999987664322222222211 111222211 1123489999998754
No 20
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.63 E-value=1.5e-07 Score=110.47 Aligned_cols=130 Identities=20% Similarity=0.272 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccc
Q 004874 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt-----~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IG 327 (726)
++..+|.|||+||+||.+. .|.|.+.. ......|.|.|||.||+++++.+++. |.++++........|
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG 119 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRG 119 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCC
Confidence 5779999999999999864 46666652 22335799999999999999999986 654444222224568
Q ss_pred cccceeeeecc----cccCeEEEEEeeCCCcceEEEEeeecCCCc-eEE--ecCccCC-CCCcEEEEEec
Q 004874 328 RFGVGFKTGAM----RLGKDALVLTQTADSRSIAFLSQSLNQGKD-NLE--IPIVSYY-RKGQFMELDTV 389 (726)
Q Consensus 328 qFGvGFKSA~m----rLG~~V~V~TK~~g~~si~~ls~Sf~eG~~-~i~--VPi~~~e-~~GT~I~l~lk 389 (726)
+.|+|+.++.. .-|..+.|.|+..+.....++......|.+ ..+ ....++. .+||.|++.+.
T Consensus 120 ~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~Lf 189 (795)
T PRK14868 120 QQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELEME 189 (795)
T ss_pred CCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEEEE
Confidence 89999976542 347889999998765432223333333322 121 1112333 48999998753
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.47 E-value=7e-07 Score=104.36 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHccccc----CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--------hhh-cccCCCC
Q 004874 253 GWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD 319 (726)
Q Consensus 253 ~~pf~ALaELIDNA~DA----gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-FG~S~K~ 319 (726)
..+...|.|||+||+|+ .++.|.|.|.. ...|+|.|||.||+.+.... +|. +..+.|-
T Consensus 36 ~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------dg~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf 106 (631)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------DGSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKF 106 (631)
T ss_pred chhhhhhhhhhccccchhhcCCCCEEEEEEeC---------CCcEEEEEcCCCCCcccccccCCcchheeeeeccccCcc
Confidence 46889999999999998 68999999872 24899999999999988776 443 2223332
Q ss_pred C--CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCc-cC--CCCCcEEEEEec
Q 004874 320 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDTV 389 (726)
Q Consensus 320 ~--~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~-~~--e~~GT~I~l~lk 389 (726)
. ......|..|+|..+... ++..++|.|++.+.. ..++|..|.-.-.++.. .. ..+||.|++.+.
T Consensus 107 ~~~~yk~SgGl~GvGls~vNa-lS~~l~V~s~r~g~~----~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~PD 176 (631)
T PRK05559 107 SNKAYKFSGGLHGVGVSVVNA-LSSRLEVEVKRDGKV----YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWPD 176 (631)
T ss_pred CCccccccCcccccchhhhhh-heeeEEEEEEeCCeE----EEEEEECCcCccCccccccccCCCCCcEEEEEEC
Confidence 1 123578999999965544 889999999987642 33444444211111211 22 458999988653
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.31 E-value=2.1e-06 Score=100.33 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcccc---c-CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh--------HHhhhh-cccCCCCC-
Q 004874 255 IFGAIAELVDNSRD---A-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA- 320 (726)
Q Consensus 255 pf~ALaELIDNA~D---A-gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-FG~S~K~~- 320 (726)
+...|.|||+||+| | +|++|.|.|.. ...|+|.|||.||+.++ ++-.|+ ...++|-.
T Consensus 31 ~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~---------d~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~ 101 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAGFASIIMVILHQ---------DQSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSN 101 (625)
T ss_pred cceeehhhhhcccchhhcCCCCEEEEEEeC---------CCeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCC
Confidence 34689999999999 9 69999999872 26899999999999987 555553 22223321
Q ss_pred -CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCc-cC--CCCCcEEEEEec
Q 004874 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDTV 389 (726)
Q Consensus 321 -~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~-~~--e~~GT~I~l~lk 389 (726)
.-....|..|+|..+... |+..+.|.|++.+.. ..++|..|.-...++.. +. ...||+|++.+.
T Consensus 102 ~~~~~SgG~~GvGls~vna-lS~~l~v~~~r~g~~----~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD 169 (625)
T TIGR01055 102 KNYHFSGGLHGVGISVVNA-LSKRVKIKVYRQGKL----YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPD 169 (625)
T ss_pred CcceecCCCcchhHHHHHH-hcCeEEEEEEECCeE----EEEEEECCeEccccccccccCCCCCCeEEEEEEC
Confidence 123578899999965544 899999999987753 33444444211112211 22 348999987554
No 23
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.28 E-value=2.8e-06 Score=99.18 Aligned_cols=94 Identities=26% Similarity=0.284 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcccccCCC-----ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCcccc
Q 004874 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt-----~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGq 328 (726)
+...+.|||+||+||.+. .|.|.+... +.+...|.|.|||.||+++++.+++. |-.++|........|+
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-----g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~ 111 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKL-----GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCC
Confidence 448899999999999875 577766521 12235699999999999999999986 4443342222356788
Q ss_pred ccceeeeec----ccccCeEEEEEeeCCC
Q 004874 329 FGVGFKTGA----MRLGKDALVLTQTADS 353 (726)
Q Consensus 329 FGvGFKSA~----mrLG~~V~V~TK~~g~ 353 (726)
.|+|+.++. +..|..+.|.|+..+.
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 999997654 2347778999987544
No 24
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.20 E-value=1.3e-06 Score=78.23 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHcccccCCC--ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccc
Q 004874 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt--~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGv 331 (726)
.+..+|.||++||+++... .|.|.+.. ..+...|+|.|||.||+++++.+++.-+.+.+. +....+.+|+
T Consensus 5 ~l~~il~~ll~Na~~~~~~~~~I~i~~~~------~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~--~~~~~~g~Gl 76 (111)
T PF02518_consen 5 RLRQILSELLDNAIKHSPEGGKIDITIEE------DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK--SETSISGHGL 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSEEEEEEEE------ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS--SSGGSSSSSH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEEE------ecCeEEEEEEeccccccccccccchhhcccccc--cccccCCCCh
Confidence 3568899999999999765 77777764 235689999999999999999998763333221 3455677999
Q ss_pred eeeeecc---cccCeEEEEEe
Q 004874 332 GFKTGAM---RLGKDALVLTQ 349 (726)
Q Consensus 332 GFKSA~m---rLG~~V~V~TK 349 (726)
||+.+.. +++.++.+.+.
T Consensus 77 GL~~~~~~~~~~~g~l~~~~~ 97 (111)
T PF02518_consen 77 GLYIVKQIAERHGGELTIESS 97 (111)
T ss_dssp HHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEc
Confidence 9976543 23444555444
No 25
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.19 E-value=5.5e-06 Score=97.08 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcccc---cC-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--------hhh-cccCCCCC-
Q 004874 255 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA- 320 (726)
Q Consensus 255 pf~ALaELIDNA~D---Ag-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-FG~S~K~~- 320 (726)
+.-.|.|||+||+| |+ |+.|.|.|.. ...|+|.|||.||+.+.-.. +++ +..+.|..
T Consensus 38 l~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~ 108 (638)
T PRK05644 38 LHHLVYEIVDNSIDEALAGYCDHIEVTINE---------DGSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGG 108 (638)
T ss_pred HHhhhHHhhhcccccccCCCCCEEEEEEeC---------CCcEEEEEeCccccCCccCCCCCCchHHheeeecccCccCC
Confidence 45678999999999 99 9999999872 23899999999999863221 222 11222221
Q ss_pred -CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecC-ccCCCCCcEEEEEe
Q 004874 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELDT 388 (726)
Q Consensus 321 -~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi-~~~e~~GT~I~l~l 388 (726)
.-....|..|+|..+... +++.++|.|++.+.. ..++|..|.-.-.++. ......||+|+..+
T Consensus 109 ~~yk~s~G~~G~Gls~vna-lS~~~~v~t~r~g~~----~~~~~~~G~~~~~~~~~~~~~~~GT~I~F~P 173 (638)
T PRK05644 109 GGYKVSGGLHGVGVSVVNA-LSTWLEVEVKRDGKI----YYQEYERGVPVTPLEVIGETDETGTTVTFKP 173 (638)
T ss_pred CcccccCCccccchhhhhh-eeceEEEEEEeCCcE----EEEEEECCeEccCccccCCcCCCCcEEEEEE
Confidence 123478999999966554 899999999987651 2334434321111111 12245899998643
No 26
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.17 E-value=5.1e-06 Score=97.59 Aligned_cols=123 Identities=16% Similarity=0.104 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHcccc---cC-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHH--------hhhh-cccCCCCC
Q 004874 254 WIFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY-FGHKQPDA 320 (726)
Q Consensus 254 ~pf~ALaELIDNA~D---Ag-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~-FG~S~K~~ 320 (726)
-+.-.+.|||+||+| |+ |+.|.|.|.. ...|+|.|||.||+.+.-. ..++ +..+.+..
T Consensus 30 gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~ 100 (654)
T TIGR01059 30 GLHHLVYEVVDNSIDEAMAGYCDTINVTIND---------DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFD 100 (654)
T ss_pred hHHhhhHHhhhccccccccCCCCEEEEEEeC---------CCcEEEEEeCCCcCccccCcCCCCchHHheeeecccCccC
Confidence 456789999999999 88 9999999872 2359999999999986211 1122 11222211
Q ss_pred --CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecC-ccCCCCCcEEEEEecC
Q 004874 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELDTVV 390 (726)
Q Consensus 321 --~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi-~~~e~~GT~I~l~lk~ 390 (726)
......|..|+|.++... +++.++|.|++.+.. ..++|..|.-.-.+.. ..-...||+|+....+
T Consensus 101 ~~~~k~s~G~~G~gl~~ina-lS~~l~v~~~~~g~~----~~~~~~~G~~~~~l~~~~~~~~~GT~V~F~pdp 168 (654)
T TIGR01059 101 KDSYKVSGGLHGVGVSVVNA-LSEWLEVTVFRDGKI----YRQEFERGIPLGPLEVVGETKKTGTTVRFWPDP 168 (654)
T ss_pred CCcceecCCccchhHHHHHH-hcCeEEEEEEECCeE----EEEEEeCCCcccCceeccCCCCCCcEEEEEECh
Confidence 123568999999965544 899999999987643 3344444421110111 1223589999865543
No 27
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.16 E-value=1.4e-05 Score=94.92 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcccc---cC-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH----------hHHhhhh-cccCCCC
Q 004874 255 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ----------DVVRMTY-FGHKQPD 319 (726)
Q Consensus 255 pf~ALaELIDNA~D---Ag-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e----------eL~~~l~-FG~S~K~ 319 (726)
+.-.+.||||||+| || ++.|.|.|.. ...|+|.|||.||+.+ |+. |. +..+.|-
T Consensus 38 Lhhlv~EivdNaiDE~~AG~a~~I~V~i~~---------dgsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt~lhAggKf 106 (756)
T PRK14939 38 LHHMVYEVVDNAIDEALAGHCDDITVTIHA---------DGSVSVSDNGRGIPTDIHPEEGVSAAEVI--MTVLHAGGKF 106 (756)
T ss_pred hhhhhhHhhcccccccccCCCCEEEEEEcC---------CCeEEEEEcCCcccCCcccccCCchhhhe--eeeecccCCC
Confidence 55779999999999 88 8999999872 2489999999999987 222 11 2222221
Q ss_pred CC--CCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEec-CccCCCCCcEEEEEec
Q 004874 320 AD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELDTV 389 (726)
Q Consensus 320 ~~--d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VP-i~~~e~~GT~I~l~lk 389 (726)
.. -.-.-|..|+|..+.. .+++.+.|.|++.+.. ..++|..|.-.-.++ +......||+|++.+.
T Consensus 107 d~~~ykvSgGlhGvG~svvN-AlS~~l~v~v~r~gk~----~~q~f~~G~~~~~l~~~g~~~~~GT~V~F~PD 174 (756)
T PRK14939 107 DQNSYKVSGGLHGVGVSVVN-ALSEWLELTIRRDGKI----HEQEFEHGVPVAPLKVVGETDKTGTEVRFWPS 174 (756)
T ss_pred CCCcccccCCccCccceEee-hccCeEEEEEEeCCeE----EEEEEecCccccCccccCCcCCCCcEEEEEEC
Confidence 11 1236789999996544 4899999999987752 344554442111111 1222458999987554
No 28
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.14 E-value=7.9e-06 Score=95.08 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=74.4
Q ss_pred HHHHHHHcccccC----CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--------hhh-cccCCCCC--CC
Q 004874 258 AIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA--DD 322 (726)
Q Consensus 258 ALaELIDNA~DAg----At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-FG~S~K~~--~d 322 (726)
.|.|||+||+||+ |+.|.|.|+. + ..|+|.|||.||+.+.... ++. +..+.+.. .-
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~-------~--g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~ 75 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDK-------D--NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAY 75 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeC-------C--CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCc
Confidence 4789999999997 9999999872 1 3999999999998654321 122 11122211 12
Q ss_pred CCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecC-CCc--eEEecCccCCCCCcEEEEEe
Q 004874 323 PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ-GKD--NLEIPIVSYYRKGQFMELDT 388 (726)
Q Consensus 323 ~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~e-G~~--~i~VPi~~~e~~GT~I~l~l 388 (726)
....|..|+|..+... ++..++|.|+..+.. ..++|.. |.- ...+ .......||.|+..+
T Consensus 76 k~s~G~~G~Gls~vna-lS~~l~v~~~~~g~~----~~~~~~~~G~~~~~~~~-~~~~~~~GT~V~F~P 138 (594)
T smart00433 76 KVSGGLHGVGASVVNA-LSTEFEVEVARDGKE----YKQSFSNNGKPLSEPKI-IGDTKKDGTKVTFKP 138 (594)
T ss_pred cccCCcccchHHHHHH-hcCceEEEEEeCCcE----EEEEEeCCCeECcccee-cCCCCCCCcEEEEEE
Confidence 3478999999965544 889999999988653 3344433 311 1111 112235899998643
No 29
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.86 E-value=1.1e-05 Score=93.37 Aligned_cols=137 Identities=19% Similarity=0.279 Sum_probs=82.6
Q ss_pred CHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh--cccC
Q 004874 240 DPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY--FGHK 316 (726)
Q Consensus 240 ~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~--FG~S 316 (726)
+...=+++ |.-.+.++..++.||+-||+||+|+.|.|.+.. ....+.|.|||.||+.++|..+-. |..+
T Consensus 6 ~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~--------~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK 77 (1142)
T KOG1977|consen 6 SVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNM--------ETFSVQVIDDGFGMGRDDLEKLGNRYFTSK 77 (1142)
T ss_pred chhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecC--------ceeEEEEEecCCCccHHHHHHHHhhhhhhh
Confidence 34444555 444446788999999999999999999999874 357899999999999999987643 2221
Q ss_pred CCCCCCCCccccccceeee---ecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCc-cCCCCCcEEEEE
Q 004874 317 QPDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SYYRKGQFMELD 387 (726)
Q Consensus 317 ~K~~~d~~~IGqFGvGFKS---A~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~-~~e~~GT~I~l~ 387 (726)
-...++...--.| ||.. |+++--..+.|.|++.+-. .++.-..|..|..-..+++. +....||.+++.
T Consensus 78 ~h~~ndl~~~~ty--GfRGeALasIsd~s~l~v~skkk~r~-~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 78 CHSVNDLENPRTY--GFRGEALASISDMSSLVVISKKKNRT-MKTFVKKFQSGSALKALEIDVTRASSGTTVTVY 149 (1142)
T ss_pred ceecccccccccc--ccchhhhhhhhhhhhhhhhhhhcCCc-hhHHHHHHhccccceecccccccccCCcEEEeH
Confidence 1122233333344 4443 2222234566777766532 11111112234333444543 344679998763
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.32 E-value=0.00098 Score=78.54 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=73.6
Q ss_pred HHHHHHHHHHccccc----CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--------hhh-cccCCCCC-
Q 004874 255 IFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA- 320 (726)
Q Consensus 255 pf~ALaELIDNA~DA----gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-FG~S~K~~- 320 (726)
+.-.+.|+||||+|. .++.|.|.|.. ...++|.|||.||+.+--.. .|+ +..+.+..
T Consensus 35 L~hlv~EIvdNavDE~~ag~~~~I~V~i~~---------dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~ 105 (637)
T TIGR01058 35 LHHLVWEIVDNSVDEVLAGYADNITVTLHK---------DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQ 105 (637)
T ss_pred hheehhhhhcchhhhhhcCCCcEEEEEEcC---------CCeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCC
Confidence 334577999999993 47888888762 35899999999998642111 122 11122211
Q ss_pred -CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEE-ecC-ccCCCCCcEEEEEec
Q 004874 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE-IPI-VSYYRKGQFMELDTV 389 (726)
Q Consensus 321 -~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~-VPi-~~~e~~GT~I~l~lk 389 (726)
.-.-.-|..|+|.+..- .|...++|.+++++. ...++|..|...+. +.. .....+||+|...+.
T Consensus 106 ~~ykvSGGlhGvG~svvN-AlS~~~~V~v~r~gk----~~~q~f~~Gg~~~~~l~~~~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 106 GGYKTAGGLHGVGASVVN-ALSSWLEVTVKRDGQ----IYQQRFENGGKIVQSLKKIGTTKKTGTLVHFHPD 172 (637)
T ss_pred CcccccCCcccccccccc-eeeceEEEEEEECCE----EEEEEEecCCcCcCCcccccCCCCCceEEEEEeC
Confidence 11345689999995444 489999999987764 33445654421111 111 122458999876554
No 31
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.29 E-value=0.00086 Score=56.03 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=55.1
Q ss_pred HHHHHHHHHcccccCC---CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 256 FGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 256 f~ALaELIDNA~DAgA---t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
..+++|||+||+++.+ ..+.|.+.. ..+...+.|.|+|.||++..+...+...... ......+.+|+|
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~------~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~g~g 72 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVER------DGDHLEIRVEDNGPGIPEEDLERIFERFSDG---SRSRKGGGTGLG 72 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---CCCCCCCccccC
Confidence 3689999999999987 445555442 2245678999999999999988876532111 112234567888
Q ss_pred eeeecc---cccCeEEEEEe
Q 004874 333 FKTGAM---RLGKDALVLTQ 349 (726)
Q Consensus 333 FKSA~m---rLG~~V~V~TK 349 (726)
++.+.- +.+..+.+.+.
T Consensus 73 l~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 73 LSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred HHHHHHHHHHcCCEEEEEeC
Confidence 865322 23556666554
No 32
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.23 E-value=0.00072 Score=57.45 Aligned_cols=74 Identities=18% Similarity=0.348 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt--~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
+..++.||++||.++..+ .+.|.+.. ..+...+.|.|+|.||+.+.+...+.-+.+.+. +....+.+|+|
T Consensus 6 l~~~~~~l~~n~~~~~~~~~~v~i~~~~------~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g 77 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPEGGRITVTLER------DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG--RSRKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC--CCCCCCccccc
Confidence 567899999999999875 66666653 234578999999999999999888764333221 22344567889
Q ss_pred eeee
Q 004874 333 FKTG 336 (726)
Q Consensus 333 FKSA 336 (726)
++.+
T Consensus 78 l~~~ 81 (111)
T smart00387 78 LSIV 81 (111)
T ss_pred HHHH
Confidence 8643
No 33
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.17 E-value=0.00071 Score=77.42 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHcccccCC-----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccc
Q 004874 253 GWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (726)
Q Consensus 253 ~~pf~ALaELIDNA~DAgA-----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IG 327 (726)
....+.|--|||||+||-+ ..|.+.+.. ..+...|.|.|||+||+++.....+..|.|.|. -+
T Consensus 426 ~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~ 493 (537)
T COG3290 426 HDLVTILGNLIDNALEALLAPEENKEIELSLSD------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TG 493 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CC
Confidence 3577899999999999976 456666652 345678899999999999999999999999875 23
Q ss_pred cccceeeee---cccccCeEEEEEe
Q 004874 328 RFGVGFKTG---AMRLGKDALVLTQ 349 (726)
Q Consensus 328 qFGvGFKSA---~mrLG~~V~V~TK 349 (726)
.-|+|+|.. .=++|..+.|.+.
T Consensus 494 ~rGiGL~Lvkq~V~~~~G~I~~~s~ 518 (537)
T COG3290 494 GRGIGLYLVKQLVERLGGSIEVESE 518 (537)
T ss_pred CCchhHHHHHHHHHHcCceEEEeeC
Confidence 448887632 2256677777664
No 34
>PRK10604 sensor protein RstB; Provisional
Probab=97.12 E-value=0.0013 Score=72.83 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccccccce
Q 004874 254 WIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFGvG 332 (726)
.+..++.+||+||+.++...|.|.+.. .++.-.|.|.|||.||+++++.+.+. |-..... ....-|.+|+|
T Consensus 319 ~l~~vl~NLl~NAik~~~~~I~I~~~~------~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~--~~~~~~g~GLG 390 (433)
T PRK10604 319 LMERVLDNLLNNALRYAHSRVRVSLLL------DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS--RDRATGGCGLG 390 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEE------ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC--CCCCCCCccch
Confidence 356789999999999988888888763 12356899999999999999999886 3322111 11123557899
Q ss_pred eeee---cccccCeEEEEEe
Q 004874 333 FKTG---AMRLGKDALVLTQ 349 (726)
Q Consensus 333 FKSA---~mrLG~~V~V~TK 349 (726)
+.-+ .-..|.++.|.+.
T Consensus 391 L~ivk~i~~~~gG~i~v~s~ 410 (433)
T PRK10604 391 LAIVHSIALAMGGSVNCDES 410 (433)
T ss_pred HHHHHHHHHHCCCEEEEEec
Confidence 8532 1234556666554
No 35
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0026 Score=73.96 Aligned_cols=120 Identities=21% Similarity=0.223 Sum_probs=76.9
Q ss_pred HHHHHHHHccccc----CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh--------HHhhhh-cccCCCCCCC-
Q 004874 257 GAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDADD- 322 (726)
Q Consensus 257 ~ALaELIDNA~DA----gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-FG~S~K~~~d- 322 (726)
-.+.|.||||+|. .++.|.|.|. ....|+|.|||-||+-+- ++-+|. +....|-..+
T Consensus 39 Hlv~EVvDNsiDEalaG~~~~I~V~l~---------~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~ 109 (635)
T COG0187 39 HLVWEVVDNSIDEALAGYADRIDVTLH---------EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDS 109 (635)
T ss_pred eeEeEeeechHhHHhhCcCcEEEEEEc---------CCCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCc
Confidence 4578999999996 3688888876 247999999999998765 222233 1112221111
Q ss_pred -CCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCc--eEE-ecCccCCCCCcEEEEEecC
Q 004874 323 -PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTVV 390 (726)
Q Consensus 323 -~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~--~i~-VPi~~~e~~GT~I~l~lk~ 390 (726)
.-.=|..|||. |+.-.|...+.|.+++.+. .+.+.|..|.- +.. +-.......||+|...+.+
T Consensus 110 YkvSGGLHGVG~-SVVNALS~~l~v~v~r~gk----~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~ 176 (635)
T COG0187 110 YKVSGGLHGVGV-SVVNALSTWLEVEVKRDGK----IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDP 176 (635)
T ss_pred cEeecCCCccce-EEEecccceEEEEEEECCE----EEEEEEeCCCcCCCceecccCCCCCCccEEEEEcCh
Confidence 23447889998 5555699999999999874 45566654432 111 1112344579998876544
No 36
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.98 E-value=0.002 Score=75.59 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=71.9
Q ss_pred HHHHHHHHccccc------C-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--h--hh-----cc---cCC
Q 004874 257 GAIAELVDNSRDA------K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M--TY-----FG---HKQ 317 (726)
Q Consensus 257 ~ALaELIDNA~DA------g-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--~--l~-----FG---~S~ 317 (726)
-.+.|+|+||.|. + ++.|.|.|+ ...++|.|||-||+-+.-.. - .. |+ .+.
T Consensus 48 hi~~EIldNavDe~~~~~~g~~~~I~V~i~----------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGg 117 (602)
T PHA02569 48 KIIDEIIDNSVDEAIRTNFKFANKIDVTIK----------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGS 117 (602)
T ss_pred eeeehhhhhhhhhhhccCCCCCcEEEEEEc----------CCEEEEEECCCcccCCcccccccccccceEEEEEeecccc
Confidence 4467999999995 2 456666654 35899999999998653211 0 11 22 122
Q ss_pred CCC-CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCccCCCCCcEEEEEec
Q 004874 318 PDA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 318 K~~-~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~~e~~GT~I~l~lk 389 (726)
|.. .-.-.-|..|+|.+. .-.|...+.|.++..+. .+.++|..|.....++......+||+|+..+.
T Consensus 118 kFd~~ykvSGGlhGVG~sv-vNaLS~~~~V~v~~~~~----~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~PD 185 (602)
T PHA02569 118 NFDDTNRVTGGMNGVGSSL-TNFFSVLFIGETCDGKN----EVTVNCSNGAENISWSTKPGKGKGTSVTFIPD 185 (602)
T ss_pred ccCCcceeeCCcCCcccee-eeccchhhheEEEcCCE----EEEEEecCCcccCCcccCCCCCCccEEEEEEC
Confidence 221 123457899999954 44489999998865543 24566655532222233333458999887654
No 37
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.88 E-value=0.0028 Score=69.13 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccceee
Q 004874 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGFK 334 (726)
+..++.+||+||+.++...+.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.++.... ....-+.+|+|++
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-~~~~~~g~GlGL~ 426 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSV------DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA-RDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc-cCCCCCCcchhHH
Confidence 45678999999999988888887763 1234679999999999999999887522221110 1122355788885
Q ss_pred ee---cccccCeEEEEE
Q 004874 335 TG---AMRLGKDALVLT 348 (726)
Q Consensus 335 SA---~mrLG~~V~V~T 348 (726)
.+ ....+..+.+.|
T Consensus 427 iv~~~v~~~~G~l~~~s 443 (461)
T PRK09470 427 IVENAIQQHRGWVKAED 443 (461)
T ss_pred HHHHHHHHCCCEEEEEE
Confidence 32 123455555544
No 38
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.85 E-value=0.0033 Score=68.44 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccccccee
Q 004874 254 WIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGF 333 (726)
.+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-++.... ... -+.+|+|+
T Consensus 331 ~l~~il~NLl~NA~k~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~-~~g~GlGL 401 (435)
T PRK09467 331 AIKRALANLVVNAARYGNGWIKVSSGT------EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARG-SSGTGLGL 401 (435)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEe------cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCC-CCCeehhH
Confidence 356789999999999998888887763 223467999999999999999998763332111 111 14578887
Q ss_pred e
Q 004874 334 K 334 (726)
Q Consensus 334 K 334 (726)
.
T Consensus 402 ~ 402 (435)
T PRK09467 402 A 402 (435)
T ss_pred H
Confidence 5
No 39
>PRK10364 sensor protein ZraS; Provisional
Probab=96.75 E-value=0.0039 Score=69.05 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccc
Q 004874 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGv 331 (726)
.+..++..||+||+++.+ ..|.|.+.. ..+.-.|.|.|||.||+++.+.+.+.-+.+.+. +..|+
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-------~g~Gl 414 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASE------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA-------EGTGL 414 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEE------eCCeEEEEEEECCCCCCHHHHHHHhCccccCCC-------CCCcc
Confidence 356789999999999954 456666652 223468999999999999999999875555442 12488
Q ss_pred eeeeec---ccccCeEEEEEe
Q 004874 332 GFKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 332 GFKSA~---mrLG~~V~V~TK 349 (726)
|++.+- -.+|.++.+.+.
T Consensus 415 GL~iv~~~v~~~gG~i~i~s~ 435 (457)
T PRK10364 415 GLAVVHNIVEQHGGTIQVASQ 435 (457)
T ss_pred cHHHHHHHHHHCCCEEEEEeC
Confidence 875332 134555555543
No 40
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.71 E-value=0.0053 Score=67.18 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccceee
Q 004874 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGFK 334 (726)
+..+|..||+||+.+....-.|.+..... ..+.-.|.|.|||.||+++++.+++.-....+. ...-+-+|+|+.
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~---~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~---~~~~~G~GLGL~ 346 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHR---TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR---DEGTEGYGIGLS 346 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEec---CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC---CCCCCcccccHH
Confidence 55789999999999976443444432110 223467899999999999999998862222221 112244788885
Q ss_pred eec---ccccCeEEEEEee
Q 004874 335 TGA---MRLGKDALVLTQT 350 (726)
Q Consensus 335 SA~---mrLG~~V~V~TK~ 350 (726)
.+. -.+|..+.|.|..
T Consensus 347 i~~~iv~~~gG~i~v~s~~ 365 (380)
T PRK09303 347 VCRRIVRVHYGQIWVDSEP 365 (380)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 332 1356666666543
No 41
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.71 E-value=0.0056 Score=66.44 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccc
Q 004874 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGv 331 (726)
.+..++.+||+||+++.. ..|.|.+.. .++...|+|.|||.||+++.+.+.+.-.+..+.... ..-+..|+
T Consensus 353 ~l~~~~~nll~Nai~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~Gl 425 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTPDGGTITVRIER------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARS-NSGEGTGL 425 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccC-CCCCCccc
Confidence 356789999999999874 456666552 234568999999999999999988762232221101 11234688
Q ss_pred eeee
Q 004874 332 GFKT 335 (726)
Q Consensus 332 GFKS 335 (726)
|++.
T Consensus 426 GL~i 429 (457)
T TIGR01386 426 GLAI 429 (457)
T ss_pred cHHH
Confidence 8753
No 42
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.68 E-value=0.0035 Score=66.76 Aligned_cols=85 Identities=14% Similarity=0.232 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccc
Q 004874 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGv 331 (726)
++..++.+||+||+.+.. ..|.|.+.. .++.-.|.|.|||.||+++++.+.+.-.+.... .-+.+|+
T Consensus 247 ~l~~il~nLi~NA~k~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~Gl 315 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSPEGSTITIKLSQ------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS-----RYGGIGL 315 (356)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC-----CCCCcCH
Confidence 566889999999999863 567776652 234568999999999999999998763322111 1234688
Q ss_pred eeeeec---ccccCeEEEEEe
Q 004874 332 GFKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 332 GFKSA~---mrLG~~V~V~TK 349 (726)
|++.+- -.+|..+.+.|.
T Consensus 316 GL~i~~~i~~~~gg~i~i~s~ 336 (356)
T PRK10755 316 GLSIVSRITQLHHGQFFLQNR 336 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEEC
Confidence 886431 234555666554
No 43
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.66 E-value=0.003 Score=63.33 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCC
Q 004874 253 GWIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 318 (726)
Q Consensus 253 ~~pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K 318 (726)
.++..+|..||+||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++.+...+.-+.+.+
T Consensus 227 ~~l~~vl~nLi~NAi~~~~~~~i~i~~~~------~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~ 287 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTPGGEITISVRQ------DDEQVTISVEDTGPGIPEEELERIFEPFFRTD 287 (336)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEEe------cCCeEEEEEEcCCCCCCHHHHHHhccCeeccC
Confidence 4577799999999999994 777777763 11246889999999999999888876444433
No 44
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.64 E-value=0.0063 Score=67.85 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcccccCC----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccccc
Q 004874 255 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFG 330 (726)
+..++.+|++||++|.. ..|.|.+.. .++.-.|.|.|||.||+++++.+.+.-+.+.+. +..|
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------~g~G 500 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------SNRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC-------CCCc
Confidence 56789999999999842 345555542 234567899999999999999998864444332 1247
Q ss_pred ceeeeecc---cccCeEEEEE
Q 004874 331 VGFKTGAM---RLGKDALVLT 348 (726)
Q Consensus 331 vGFKSA~m---rLG~~V~V~T 348 (726)
+|+..+-- ..|..+.|.+
T Consensus 501 lGL~iv~~iv~~~~G~i~v~s 521 (542)
T PRK11086 501 VGLYLVKQSVENLGGSIAVES 521 (542)
T ss_pred CcHHHHHHHHHHcCCEEEEEe
Confidence 88753321 2345555544
No 45
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.60 E-value=0.0049 Score=66.86 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcccccCCCc----cEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccccc
Q 004874 255 IFGAIAELVDNSRDAKATK----LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~----V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFG 330 (726)
+..+|.+|+.||+++.+.. ..|.+.... ..+.-.|+|.|||.||+++...+.|.-.++.+.. ..+.-|
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~----~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~----~~~G~G 459 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL----NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG----SRKHIG 459 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe----cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC----CCCCCc
Confidence 4578999999999985332 334443211 2345689999999999999999988632332211 123357
Q ss_pred ceeeeecc---cccCeEEEEE
Q 004874 331 VGFKTGAM---RLGKDALVLT 348 (726)
Q Consensus 331 vGFKSA~m---rLG~~V~V~T 348 (726)
+|++.+-- .+|..+.|.|
T Consensus 460 lGL~i~~~iv~~~gG~i~~~s 480 (494)
T TIGR02938 460 MGLSVAQEIVADHGGIIDLDD 480 (494)
T ss_pred ccHHHHHHHHHHcCCEEEEEE
Confidence 78753311 3455555544
No 46
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.57 E-value=0.0088 Score=61.37 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHcccccCCC--ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccc
Q 004874 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt--~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGv 331 (726)
.+..++.+||.||+++... .|.|.+.. ..+...|.|.|||.||+++.+.+++......... ....-+..|+
T Consensus 229 ~l~~vl~nll~Nai~~~~~~~~i~i~~~~------~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~-~~~~~~g~gl 301 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTPEGGTITVRWRR------DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS-RSRDTGGTGL 301 (333)
T ss_pred HHHHHHHHHHHHhheeCCCCCeEEEEEEE------cCCEEEEEEEecCCCCCHHHHhhhccCceecCcc-cccCCCCCcc
Confidence 3567899999999998654 45554442 2234679999999999999999987633221110 0111233588
Q ss_pred eeeeecc---cccCeEEEEEe
Q 004874 332 GFKTGAM---RLGKDALVLTQ 349 (726)
Q Consensus 332 GFKSA~m---rLG~~V~V~TK 349 (726)
|++.+-. ..|.++.+.|.
T Consensus 302 GL~~~~~~~~~~gG~i~~~s~ 322 (333)
T TIGR02966 302 GLAIVKHVLSRHHARLEIESE 322 (333)
T ss_pred cHHHHHHHHHHCCCEEEEEec
Confidence 8864321 34666666554
No 47
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.51 E-value=0.0084 Score=65.80 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcccccCCC--ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt--~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.=.+..+.. .....|..|+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~-~~~~~~g~GlG 425 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQ------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS-RNRASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC-cCCCCCCCcHH
Confidence 557899999999998654 45665552 2345678999999999999999887522222111 11234556888
Q ss_pred eeeec---ccccCeEEEEEe
Q 004874 333 FKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 333 FKSA~---mrLG~~V~V~TK 349 (726)
++.+- -+.|.++.+.+.
T Consensus 426 L~iv~~i~~~~~G~l~~~s~ 445 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHS 445 (466)
T ss_pred HHHHHHHHHHcCCEEEEEEC
Confidence 85321 234555555553
No 48
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.45 E-value=0.0071 Score=66.60 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHcccccCCC--ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCcccccc
Q 004874 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt--~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFG 330 (726)
.+..++.+||+||+++... .|.|.+.. ..+...|+|.|||.||+++++.+.+. |-...+. .....|..|
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~G~G 388 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQR------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA--RSRQTGGSG 388 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC--CCCCCCCCc
Confidence 4568899999999999754 45554442 22346799999999999999999876 3322111 111224458
Q ss_pred ceeeeec---ccccCeEEEEE
Q 004874 331 VGFKTGA---MRLGKDALVLT 348 (726)
Q Consensus 331 vGFKSA~---mrLG~~V~V~T 348 (726)
+|+..+- -..|..+.|.|
T Consensus 389 LGL~ivk~iv~~~gG~i~i~s 409 (430)
T PRK11006 389 LGLAIVKHALSHHDSRLEIES 409 (430)
T ss_pred hHHHHHHHHHHHCCCEEEEEe
Confidence 8875332 13455555544
No 49
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.42 E-value=0.0053 Score=74.31 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=74.1
Q ss_pred HHHHHHHHHcccccC----CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--------hhh-------cccC
Q 004874 256 FGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-------FGHK 316 (726)
Q Consensus 256 f~ALaELIDNA~DAg----At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-------FG~S 316 (726)
.-.|-|+||||+|.. ++.|.|.|.. ...++|.|||-||+-+.-.+ .|. |...
T Consensus 131 hhLv~EIlDNSVDE~laG~~~~I~V~i~~---------DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~ 201 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLAGECNKITVVLHK---------DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDT 201 (903)
T ss_pred eEEEEEEeeccchhhccCCCcEEEEEEcC---------CCeEEEEeCCccccccccccCCCcceeEEEEEeccCccccCc
Confidence 345789999999952 5788887762 36899999999998743221 121 3221
Q ss_pred C-------------------C---------------C--CCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEE
Q 004874 317 Q-------------------P---------------D--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLS 360 (726)
Q Consensus 317 ~-------------------K---------------~--~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls 360 (726)
. | . ..=.-.-|..|||. |+.=.|...+.|.+++.+. .+.
T Consensus 202 ~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~-SVVNALS~~l~VeV~RdGK----~y~ 276 (903)
T PTZ00109 202 FPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGL-SVVNALSSFLKVDVFKGGK----IYS 276 (903)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcce-eeeeeccCeEEEEEEECCE----EEE
Confidence 0 0 0 00023678999999 4555599999999998875 455
Q ss_pred eeecCCCceEEecCc--cCCCCCcEEEEEec
Q 004874 361 QSLNQGKDNLEIPIV--SYYRKGQFMELDTV 389 (726)
Q Consensus 361 ~Sf~eG~~~i~VPi~--~~e~~GT~I~l~lk 389 (726)
++|..|.-.-.+.+. +-..+||+|...+.
T Consensus 277 q~F~rG~~v~pLkvig~~~~~tGT~VtF~PD 307 (903)
T PTZ00109 277 IELSKGKVTKPLSVFSCPLKKRGTTIHFLPD 307 (903)
T ss_pred EEeCCCcccCCccccCCcCCCCceEEEEEeC
Confidence 666555311111111 11358999876654
No 50
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.35 E-value=0.011 Score=64.54 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccc
Q 004874 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGv 331 (726)
++..++.+||.||+.+.. ..|.|.+.. .++...|+|.|||.||+++++.+.+.-.++.+.. + ..-+..|+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~-~~~~~~Gl 439 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEV------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-A-NGRKSTGL 439 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-C-CCCCCcch
Confidence 577899999999999864 466666653 2345789999999999999999887633322210 1 11134578
Q ss_pred eeeeec---ccccCeEEEEE
Q 004874 332 GFKTGA---MRLGKDALVLT 348 (726)
Q Consensus 332 GFKSA~---mrLG~~V~V~T 348 (726)
|++.+- ..+|..+.+.|
T Consensus 440 GL~i~~~~~~~~~G~i~i~s 459 (475)
T PRK11100 440 GLAFVREVARLHGGEVTLRN 459 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEE
Confidence 876432 12455555544
No 51
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.29 E-value=0.01 Score=66.94 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcccccC------CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccc
Q 004874 255 IFGAIAELVDNSRDAK------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (726)
Q Consensus 255 pf~ALaELIDNA~DAg------At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGq 328 (726)
+...+.+||+||++|. ...|.|.+.. ..+.-.|.|.|||.||++++..+.+.-+++.+.. .-|.
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~----~~~g 502 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD----EPGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC----CCCC
Confidence 4567899999999983 3456666552 2345678999999999999999998766654421 1233
Q ss_pred ccceeee
Q 004874 329 FGVGFKT 335 (726)
Q Consensus 329 FGvGFKS 335 (726)
.|+|++.
T Consensus 503 ~GlGL~i 509 (545)
T PRK15053 503 HGIGLYL 509 (545)
T ss_pred ceeCHHH
Confidence 5888854
No 52
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.27 E-value=0.0098 Score=75.16 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHcccccC--------CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--h----hhccc---C
Q 004874 254 WIFGAIAELVDNSRDAK--------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---K 316 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAg--------At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--~----l~FG~---S 316 (726)
-+.-.+-|+|+||.|.. ++.|.|.|+. +...|+|.|||-||+-+--.. + +-||+ +
T Consensus 57 GL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~--------d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aG 128 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDE--------ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTS 128 (1388)
T ss_pred hhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEec--------cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecc
Confidence 35567899999999952 4678887762 246899999999997653211 1 11322 2
Q ss_pred CCCC--CCCCccccccceeeeecccccCeEEEEEeeC--CCcceEEEEeeecCCCceEEecCc-cC-C-CCCcEEEEEec
Q 004874 317 QPDA--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA--DSRSIAFLSQSLNQGKDNLEIPIV-SY-Y-RKGQFMELDTV 389 (726)
Q Consensus 317 ~K~~--~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~--g~~si~~ls~Sf~eG~~~i~VPi~-~~-e-~~GT~I~l~lk 389 (726)
.+.. .....-|..|+|.+.+-. +...+.|.+... +. .+.++|..|-....-|.. +. . .+||+|+..+.
T Consensus 129 gkfdd~~yKvSGGlhGVGasvvNa-lS~~f~Vev~r~~~gk----~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD 203 (1388)
T PTZ00108 129 SNYDDTEKRVTGGRNGFGAKLTNI-FSTKFTVECVDSKSGK----KFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPD 203 (1388)
T ss_pred ccCCCCceeeecccccCCcccccc-ccceEEEEEEECCCCC----EEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeC
Confidence 2321 123567999999965544 899999999987 43 345566554222222322 22 2 58999887654
Q ss_pred C
Q 004874 390 V 390 (726)
Q Consensus 390 ~ 390 (726)
.
T Consensus 204 ~ 204 (1388)
T PTZ00108 204 Y 204 (1388)
T ss_pred H
Confidence 3
No 53
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.26 E-value=0.012 Score=73.43 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHcccccC-----CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--------hhh-cccCCCC
Q 004874 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD 319 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAg-----At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-FG~S~K~ 319 (726)
-+.-.+-|+|+||.|.. ++.|.|.|+. +...|+|.|||-||+-+--.. .|+ +..+.+.
T Consensus 52 GL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~--------~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkF 123 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDPSMDSLKVDIDV--------EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNF 123 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc--------CCCeEEEEecCccccCCCCCCCCCccceEEEEeecccccc
Confidence 35567899999999964 3777887762 247999999999998752211 111 1122232
Q ss_pred C--CCCCccccccceeeeecccccCeEEEEEe--eCCCcceEEEEeeecCCCceEEecCc-cC--CCCCcEEEEEecC
Q 004874 320 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQ--TADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDTVV 390 (726)
Q Consensus 320 ~--~d~~~IGqFGvGFKSA~mrLG~~V~V~TK--~~g~~si~~ls~Sf~eG~~~i~VPi~-~~--e~~GT~I~l~lk~ 390 (726)
. .-...-|..|+|.+.+-. +...++|.+. +.+. .+.++|..|......|.. .. ..+||+|+..+..
T Consensus 124 dd~~ykvSGGlhGvGasvvNa-LS~~f~Vev~d~r~gk----~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~PD~ 196 (1135)
T PLN03128 124 DDNEKKTTGGRNGYGAKLANI-FSTEFTVETADGNRGK----KYKQVFTNNMSVKSEPKITSCKASENWTKITFKPDL 196 (1135)
T ss_pred CCccceeeccccCCCCeEEEe-ecCeEEEEEEECCCCe----EEEEEeCCCcccCCCceeccCCCCCCceEEEEEECH
Confidence 1 123467899999965444 8999999998 4442 344666555322222322 22 2489998876543
No 54
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.17 E-value=0.01 Score=69.96 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh-HHhhhhcccCCCCCCCCCccccccc
Q 004874 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-VVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee-L~~~l~FG~S~K~~~d~~~IGqFGv 331 (726)
...++.+||+||+++.. ..|.|.+.. .++...|+|.|||.||+++. ..+.+.-.++.+. +..|+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GL 646 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVER------ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEE------cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcch
Confidence 45689999999999964 456766653 23457899999999999998 5666653333321 34578
Q ss_pred eeeeec---ccccCeEEEEEe
Q 004874 332 GFKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 332 GFKSA~---mrLG~~V~V~TK 349 (726)
|++.+- -.+|.++.|.|.
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~ 667 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVEST 667 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEec
Confidence 876432 134555555553
No 55
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.14 E-value=0.017 Score=64.26 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcccccCCCc--cEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~--V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
+..++.+||+||+.+.... |.|.+.. + .++...|.|.|||.||+++++.+.+.-.++.+. +..|+|
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~--~---~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-------~g~glG 568 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQ--Y---SDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA-------KGTGLG 568 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEE--c---CCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC-------CCCchh
Confidence 6688999999999986544 4444432 1 112278999999999999999888764443321 124777
Q ss_pred eeeec---ccccCeEEEEEe
Q 004874 333 FKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 333 FKSA~---mrLG~~V~V~TK 349 (726)
++.+- -.+|.++.|.|.
T Consensus 569 L~~~~~~~~~~~G~i~~~s~ 588 (607)
T PRK11360 569 LALSQRIINAHGGDIEVESE 588 (607)
T ss_pred HHHHHHHHHHcCCEEEEEEc
Confidence 65321 135666666553
No 56
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.02 E-value=0.017 Score=65.70 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccceee
Q 004874 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGFK 334 (726)
...++..||+||+++....+.|.+.. .++.-.|.|.|||.||+++++.+.+.-++.... .-+-.|+|+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-----~~~G~GLGL~ 447 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQ------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADT-----LRPGQGLGLS 447 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-----CCCCcchhHH
Confidence 46789999999999988878777763 223567899999999999999988752222111 1123688885
Q ss_pred e
Q 004874 335 T 335 (726)
Q Consensus 335 S 335 (726)
.
T Consensus 448 I 448 (485)
T PRK10815 448 V 448 (485)
T ss_pred H
Confidence 3
No 57
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.78 E-value=0.026 Score=67.79 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
.+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.+..+. ..|-.|+|
T Consensus 513 ~l~~il~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~GLG 581 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTETGGIRLRVKR------HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT-----HSQGTGLG 581 (921)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC-----CCCCCchH
Confidence 356789999999999853 467776653 234568899999999999999998752222111 12446888
Q ss_pred eeeec---ccccCeEEEEEeeC
Q 004874 333 FKTGA---MRLGKDALVLTQTA 351 (726)
Q Consensus 333 FKSA~---mrLG~~V~V~TK~~ 351 (726)
+..+- -.+|..+.|.|...
T Consensus 582 L~i~~~~~~~~gG~i~i~s~~~ 603 (921)
T PRK15347 582 LTIASSLAKMMGGELTLFSTPG 603 (921)
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 75432 13577788777544
No 58
>PRK10337 sensor protein QseC; Provisional
Probab=95.76 E-value=0.023 Score=62.33 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCcccccccee
Q 004874 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFGvGF 333 (726)
+..++.+||+||+.+....-.|.+... ...|+|.|||.||+++++.+.+. |-.. + ....+.+|+|+
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~--------~~~i~i~D~G~Gi~~~~~~~if~~f~~~-~----~~~~~g~GlGL 419 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLN--------ARNFTVRDNGPGVTPEALARIGERFYRP-P----GQEATGSGLGL 419 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE--------eeEEEEEECCCCCCHHHHHHhcccccCC-C----CCCCCccchHH
Confidence 557899999999999765444444420 23799999999999999998875 3221 1 11224478887
Q ss_pred eeec---ccccCeEEEEEe
Q 004874 334 KTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 334 KSA~---mrLG~~V~V~TK 349 (726)
.-+- -+.|.++.+.+.
T Consensus 420 ~iv~~i~~~~gg~l~~~s~ 438 (449)
T PRK10337 420 SIVRRIAKLHGMNVSFGNA 438 (449)
T ss_pred HHHHHHHHHcCCEEEEEec
Confidence 5321 134555555543
No 59
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.60 E-value=0.017 Score=67.02 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHcccccCC----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccC
Q 004874 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHK 316 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S 316 (726)
-+...|-.||+||+||.+ ..|.|.... .++.-.|+|.|||.|+.++-+.++|. |-++
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~------~~~~v~l~VrDnGpGi~~e~~~~lFePF~Tt 558 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQR------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTT 558 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------cCCeEEEEEccCCCCCCHHHHHhhcCCcccc
Confidence 477899999999999954 566666552 34567899999999999999999987 5444
No 60
>PLN03237 DNA topoisomerase 2; Provisional
Probab=95.60 E-value=0.029 Score=71.06 Aligned_cols=125 Identities=15% Similarity=0.261 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcccccC-----CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--h----hhcc---cCCCCC
Q 004874 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFG---HKQPDA 320 (726)
Q Consensus 255 pf~ALaELIDNA~DAg-----At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--~----l~FG---~S~K~~ 320 (726)
+.-.+-|+|+||.|-. .+.|.|.|+. ....|+|.|||-||+-+--.. . +-|| .+.+..
T Consensus 78 L~kifdEIldNAvDe~~r~g~~~~I~V~I~~--------~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFd 149 (1465)
T PLN03237 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDV--------EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYD 149 (1465)
T ss_pred hhhhHHHHhhhhHhHHhhcCCCCEEEEEEEc--------CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCC
Confidence 4567899999999963 3778887762 246899999999998752111 0 1122 222321
Q ss_pred --CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCc-c--CCCCCcEEEEEecC
Q 004874 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-S--YYRKGQFMELDTVV 390 (726)
Q Consensus 321 --~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~-~--~e~~GT~I~l~lk~ 390 (726)
.-...-|..|+|.+.+-. +...++|.++.... --.+.++|..+-+...-|.. . ...+||+|+..+..
T Consensus 150 d~~yKvSGGlhGVGasvvNa-LS~~f~Vev~Dg~~--gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~PD~ 221 (1465)
T PLN03237 150 DNEKKTTGGRNGYGAKLTNI-FSTEFVIETADGKR--QKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFKPDL 221 (1465)
T ss_pred CCcceeeccccccCcccccc-ccCeeEEEEEECCC--CeEEEEEEeCCCCccCCceeccCCCCCCceEEEEEECH
Confidence 123467899999965444 89999999983211 12345566442122112221 1 12589998866543
No 61
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.51 E-value=0.035 Score=65.98 Aligned_cols=92 Identities=13% Similarity=0.228 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccccccee
Q 004874 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGF 333 (726)
+..+|.+||+||+++.. ..|.|.+... ..+.-.|.|.|||.||+++++.+.+.-.+..+........+.-|+|+
T Consensus 399 l~qvl~NLl~NAik~~~~g~v~i~~~~~-----~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 399 LRQILWNLISNAVKFTQQGGVTVRVRYE-----EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEc-----cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 56789999999999964 4566666531 12346889999999999999999986222222111222234457777
Q ss_pred eeec---ccccCeEEEEEeeC
Q 004874 334 KTGA---MRLGKDALVLTQTA 351 (726)
Q Consensus 334 KSA~---mrLG~~V~V~TK~~ 351 (726)
..+- -..|..+.|.|...
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 4321 24688888887654
No 62
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.36 E-value=0.044 Score=65.40 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccc
Q 004874 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGv 331 (726)
.+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-..+.+.. ....-+..|+
T Consensus 597 ~L~~il~NLI~NAik~s~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~-~~~~~~g~GL 669 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPEDGLIEVGLSQ------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ-GAQDQPHLGL 669 (703)
T ss_pred HHHHHHHHHHHHHHHHCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC-CCCCCCCccH
Confidence 356789999999999864 345665542 2345679999999999999999988633322211 1111234788
Q ss_pred eeeeec---ccccCeEEEEEe
Q 004874 332 GFKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 332 GFKSA~---mrLG~~V~V~TK 349 (726)
|++.+- ...|.++.+.+.
T Consensus 670 GL~Ivr~Iv~~~gG~I~v~s~ 690 (703)
T TIGR03785 670 GLYIVRLIADFHQGRIQAENR 690 (703)
T ss_pred HHHHHHHHHHHcCCEEEEEEC
Confidence 886432 234666666554
No 63
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=95.19 E-value=0.069 Score=59.35 Aligned_cols=74 Identities=23% Similarity=0.462 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcccccC----------CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCC--CC
Q 004874 255 IFGAIAELVDNSRDAK----------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA--DD 322 (726)
Q Consensus 255 pf~ALaELIDNA~DAg----------At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~--~d 322 (726)
+.-++-||..||..|- -+.|.|.+.. +++...+.|.|-|+|++++++..++++++|.... .+
T Consensus 261 L~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 5678899999999992 2446776653 3456788999999999999999999999886432 12
Q ss_pred ---CCccccccceee
Q 004874 323 ---PNRIGRFGVGFK 334 (726)
Q Consensus 323 ---~~~IGqFGvGFK 334 (726)
....--||-|+.
T Consensus 335 ~~~~~plaGfG~GLP 349 (414)
T KOG0787|consen 335 NNRTAPLAGFGFGLP 349 (414)
T ss_pred CCCcCcccccccCCc
Confidence 234455666664
No 64
>PRK09835 sensor kinase CusS; Provisional
Probab=95.16 E-value=0.041 Score=60.60 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCcccccc
Q 004874 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFG 330 (726)
.+..++.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++...+. |-..... ....-+..|
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~------~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~--~~~~~~g~G 446 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQE------VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS--RQRKGEGSG 446 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--CCCCCCCcc
Confidence 467889999999999864 346666552 22346799999999999999998875 3322111 111224568
Q ss_pred ceeeee---cccccCeEEEEE
Q 004874 331 VGFKTG---AMRLGKDALVLT 348 (726)
Q Consensus 331 vGFKSA---~mrLG~~V~V~T 348 (726)
+|+.-+ .-..|.++.+.|
T Consensus 447 lGL~i~~~i~~~~~g~i~~~s 467 (482)
T PRK09835 447 IGLAIVKSIVVAHKGTVAVTS 467 (482)
T ss_pred hHHHHHHHHHHHCCCEEEEEE
Confidence 888533 113455555554
No 65
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.15 E-value=0.041 Score=66.42 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEEccccc---------CCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCC
Q 004874 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~---------~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~ 323 (726)
+..+|.+||+||+++.. ..|.|.+....... ..++.-.|.|.|||.||+++++.+.+.-.++.+.
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 56789999999999854 45666665310000 0123457899999999999999998863333221
Q ss_pred Cccccccceeeee---cccccCeEEEEEeeC
Q 004874 324 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (726)
Q Consensus 324 ~~IGqFGvGFKSA---~mrLG~~V~V~TK~~ 351 (726)
+-.|+|+..+ .-.+|.++.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 4468887533 224688888887643
No 66
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.06 E-value=0.077 Score=49.44 Aligned_cols=45 Identities=22% Similarity=0.193 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcccccC-----CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCH
Q 004874 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAg-----At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ 304 (726)
.+..++.||+.||+.++ ...|.|.+.. ..+...|.|.|+|.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~------~~~~~~i~I~D~G~gi~~ 88 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATI------EDHEVYITVRDEGIGIEN 88 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE------eCCEEEEEEEEcCCCcCc
Confidence 45688999999999753 2456666653 223567899999999973
No 67
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=94.98 E-value=0.059 Score=56.94 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcccccC-CCccEEEEEEcccc--cCC----CCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccc
Q 004874 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFK--KAG----KDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (726)
Q Consensus 255 pf~ALaELIDNA~DAg-At~V~I~I~~~~d~--~~~----~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IG 327 (726)
+..++..||+||+.+. .....|.+...... ... .....|.|.|||.||+++.+.+.+.-+++.+. +
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------~ 310 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------C
Confidence 5688999999999985 33333443311100 000 01236899999999999998888752233221 1
Q ss_pred cccceeeee---cccccCeEEEEEe
Q 004874 328 RFGVGFKTG---AMRLGKDALVLTQ 349 (726)
Q Consensus 328 qFGvGFKSA---~mrLG~~V~V~TK 349 (726)
--|+|+..+ .-..|..+.|.|.
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~ 335 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSW 335 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEec
Confidence 247777532 1235666666654
No 68
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=94.87 E-value=0.069 Score=64.38 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccccccc
Q 004874 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFGv 331 (726)
.+...|.+||+||+.+.. ..|.|.+.. ..+...|.|.|||.||+++++.+.+. |-.. . ...|-.|+
T Consensus 561 ~l~qil~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~-~-----~~~~g~GL 628 (914)
T PRK11466 561 RIRQVITNLLSNALRFTDEGSIVLRSRT------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV-S-----GKRGGTGL 628 (914)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHhchhhcC-C-----CCCCCCcc
Confidence 355789999999999853 456666542 22346789999999999999999876 3221 1 11245688
Q ss_pred eeeee---cccccCeEEEEEeeCC
Q 004874 332 GFKTG---AMRLGKDALVLTQTAD 352 (726)
Q Consensus 332 GFKSA---~mrLG~~V~V~TK~~g 352 (726)
|+..+ .-.+|.++.|.|...+
T Consensus 629 GL~i~~~l~~~~gG~i~v~s~~~~ 652 (914)
T PRK11466 629 GLTISSRLAQAMGGELSATSTPEV 652 (914)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCC
Confidence 87533 1246888888876543
No 69
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.70 E-value=0.074 Score=64.39 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCc-CEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCcccccc
Q 004874 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~-~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFG 330 (726)
.+..+|..||+||+.+.. ..|.|.+.. ..+. -.|.|.|+|.||+++++.+.+. |..... ...-|..|
T Consensus 579 ~l~~il~nLi~NAik~~~~g~i~i~~~~------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~~g~G 648 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTDRGSVVLRVSL------NDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADG----RRRSGGTG 648 (968)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEEEE------cCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCC----CCCCCCcc
Confidence 356789999999999854 456776653 1223 6799999999999999999885 433321 12224568
Q ss_pred ceeeeec---ccccCeEEEEEeeC
Q 004874 331 VGFKTGA---MRLGKDALVLTQTA 351 (726)
Q Consensus 331 vGFKSA~---mrLG~~V~V~TK~~ 351 (726)
+|+..+- -.+|.++.|.|...
T Consensus 649 LGL~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 649 LGLAISQRLVEAMDGELGVESELG 672 (968)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCC
Confidence 8875331 24678888877654
No 70
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.69 E-value=0.081 Score=63.48 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFGvG 332 (726)
+..+|..||+||+.+.. ..+.|.+...... .....-.|.|.|||.||+++++.+.+. |-...+. .....|-.|+|
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~-~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~g~GLG 485 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRALS-NTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS--ISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEecC-CCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC--CCCCCCCcchh
Confidence 55789999999999854 3455555421100 011134688999999999999998875 4322111 11223557888
Q ss_pred eeee---cccccCeEEEEEeeCC
Q 004874 333 FKTG---AMRLGKDALVLTQTAD 352 (726)
Q Consensus 333 FKSA---~mrLG~~V~V~TK~~g 352 (726)
+.-+ .-.+|.++.|.|....
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~ 508 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNR 508 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCC
Confidence 7532 1246888888876543
No 71
>PRK10490 sensor protein KdpD; Provisional
Probab=94.19 E-value=0.087 Score=64.64 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHcccccCCC--ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccc
Q 004874 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt--~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGv 331 (726)
.+..+|.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-.++.+. ....+-.|+
T Consensus 778 ~L~qVL~NLL~NAik~s~~g~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~---~~~~~G~GL 848 (895)
T PRK10490 778 LFERVLINLLENAVKYAGAQAEIGIDAHV------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK---ESAIPGVGL 848 (895)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC---CCCCCCccH
Confidence 3568899999999998644 45555542 234568899999999999999998862222221 111233677
Q ss_pred eeeeec---ccccCeEEEEEee
Q 004874 332 GFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 332 GFKSA~---mrLG~~V~V~TK~ 350 (726)
|++.+- -..|.++.+.|..
T Consensus 849 GL~Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 849 GLAICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred HHHHHHHHHHHcCCEEEEEECC
Confidence 875321 1356666666643
No 72
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.11 E-value=0.12 Score=63.65 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFGvG 332 (726)
+..+|..||+||+.+.. ..|.|.+.. .++.-.|.|.|||.||+++++.+.+. |-..... .....+-.|+|
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~------~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~--~~~~~~GtGLG 634 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRV------DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG--VQRNFQGTGLG 634 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEE------eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC--CCCCCCCeehh
Confidence 55789999999999854 346665552 22456789999999999999999876 4322111 11122346888
Q ss_pred eeeec---ccccCeEEEEEeeC
Q 004874 333 FKTGA---MRLGKDALVLTQTA 351 (726)
Q Consensus 333 FKSA~---mrLG~~V~V~TK~~ 351 (726)
+..+. -.+|.++.|.|...
T Consensus 635 L~I~k~lv~~~gG~I~v~S~~g 656 (924)
T PRK10841 635 LAICEKLINMMDGDISVDSEPG 656 (924)
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 75432 24688888887643
No 73
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=93.73 E-value=0.13 Score=59.47 Aligned_cols=73 Identities=18% Similarity=0.402 Sum_probs=51.9
Q ss_pred HHHHHHHHHHccccc-CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccccccee
Q 004874 255 IFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 pf~ALaELIDNA~DA-gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGF 333 (726)
....++|-+.||+-. .|++|.|.+.. ..+...++|+|||+|++.. ....|.||+-.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~------~~g~~~~~VeDnG~Gi~~~-----------------~e~~gHyGL~I 538 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQ------NDGQVTLTVEDNGVGIDEA-----------------AEPSGHYGLNI 538 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEe------cCCeEEEEEeeCCcCCCCc-----------------cCCCCCcchHH
Confidence 567899999999975 79999998874 2378899999999999775 24567887654
Q ss_pred ee-ecccccCeEEEEEee
Q 004874 334 KT-GAMRLGKDALVLTQT 350 (726)
Q Consensus 334 KS-A~mrLG~~V~V~TK~ 350 (726)
-. =+-+|+....|..+.
T Consensus 539 M~ERA~~L~~~L~i~~~~ 556 (574)
T COG3850 539 MRERAQRLGGQLRIRRRE 556 (574)
T ss_pred HHHHHHHhcCeEEEeecC
Confidence 10 011456665555543
No 74
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=93.69 E-value=0.094 Score=51.23 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcccccCC-----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccc
Q 004874 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA-----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqF 329 (726)
+..|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.||+++.+...+......+.. +...-|
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~-~~~~~~-- 113 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEI------YEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI-EDLREG-- 113 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------ECCEEEEEEEECCcCCChHHhccccCCCCCCCcc-cccCCC--
Confidence 45799999999998863 245565542 2356889999999999988776655422211111 111122
Q ss_pred cceeeeecccccCeEEEEE
Q 004874 330 GVGFKTGAMRLGKDALVLT 348 (726)
Q Consensus 330 GvGFKSA~mrLG~~V~V~T 348 (726)
|.|+...- .+.+++.+.+
T Consensus 114 G~GL~li~-~l~d~v~~~~ 131 (161)
T PRK04069 114 GLGLFLIE-TLMDDVTVYK 131 (161)
T ss_pred ceeHHHHH-HHHHhEEEEc
Confidence 66764332 2556665543
No 75
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.38 E-value=0.18 Score=46.10 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccc
Q 004874 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt-----~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGq 328 (726)
....|+.|++.||+..+.. .|.|.+.. ..+.-.|.|.|+|.|+++........-.. +....|
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~------~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------~~~~~~- 97 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEV------DPDRLRISVRDNGPGFDPEQLPQPDPWEP------DSLREG- 97 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE------cCCEEEEEEEECCCCCChhhccCcccccC------CCCCCC-
Confidence 3568999999999998653 45555543 23467889999999999886544321110 112223
Q ss_pred ccceeeeecccccCeEEE
Q 004874 329 FGVGFKTGAMRLGKDALV 346 (726)
Q Consensus 329 FGvGFKSA~mrLG~~V~V 346 (726)
|.|+.... .+.+++.+
T Consensus 98 -G~Gl~li~-~l~D~~~~ 113 (125)
T PF13581_consen 98 -GRGLFLIR-SLMDEVDY 113 (125)
T ss_pred -CcCHHHHH-HHHcEEEE
Confidence 66664322 36777777
No 76
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.35 E-value=0.22 Score=61.30 Aligned_cols=92 Identities=15% Similarity=0.265 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFGvG 332 (726)
+...|..||+||+.+.. ..|.|.+... . ...+.-.|.|.|+|.||+++++.+.+. |-.. +.. + ..-+-.|+|
T Consensus 566 L~QVL~NLL~NAik~t~~G~I~I~v~~~--~-~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~-~~~-~-~~~~GtGLG 639 (894)
T PRK10618 566 LRKILLLLLNYAITTTAYGKITLEVDQD--E-SSPDRLTIRILDTGAGVSIKELDNLHFPFLNQ-TQG-D-RYGKASGLT 639 (894)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEc--c-CCCcEEEEEEEECCCCCCHHHHHHhcCccccC-CCC-C-CCCCCcChh
Confidence 56789999999999854 3566666531 1 112346789999999999999999875 4322 211 1 111235777
Q ss_pred eeee---cccccCeEEEEEeeCC
Q 004874 333 FKTG---AMRLGKDALVLTQTAD 352 (726)
Q Consensus 333 FKSA---~mrLG~~V~V~TK~~g 352 (726)
+.-+ .-.+|..+.|.|....
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~ 662 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGL 662 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCC
Confidence 7432 1246888999886543
No 77
>PRK13557 histidine kinase; Provisional
Probab=93.32 E-value=0.27 Score=54.67 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcccccCCCc--cEEEEEEcccc--c-------CCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCC
Q 004874 255 IFGAIAELVDNSRDAKATK--LEISIESIYFK--K-------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~--V~I~I~~~~d~--~-------~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~ 323 (726)
+..++..|+.||.++.... +.|........ . ..++...|.|.|||.||+++...+.+.-.++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 5578999999999986543 33333211000 0 0112347899999999999999988863333321
Q ss_pred Cccccccceeeee---cccccCeEEEEEeeC
Q 004874 324 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (726)
Q Consensus 324 ~~IGqFGvGFKSA---~mrLG~~V~V~TK~~ 351 (726)
..+..|+|+..+ .-.+|..+.|.|...
T Consensus 354 -~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 354 -EGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred -CCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 113457777532 234688888887654
No 78
>PRK10547 chemotaxis protein CheA; Provisional
Probab=93.16 E-value=0.22 Score=59.48 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=54.6
Q ss_pred HHHHHHHHcccccCC--------------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh-------------
Q 004874 257 GAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR------------- 309 (726)
Q Consensus 257 ~ALaELIDNA~DAgA--------------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~------------- 309 (726)
..|..||.||+|++- ..|.|.... ..+.-.|.|.|||.||+++.+.+
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~l 461 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENM 461 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccC
Confidence 446799999999862 245555542 23456789999999999987753
Q ss_pred --------hhhcccCCCCCCCCCccccccceeee---ecccccCeEEEEEeeC
Q 004874 310 --------MTYFGHKQPDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTA 351 (726)
Q Consensus 310 --------~l~FG~S~K~~~d~~~IGqFGvGFKS---A~mrLG~~V~V~TK~~ 351 (726)
.|.-|++.+. ....+.-.|+|+.- ..-.++..+.|.|...
T Consensus 462 s~~e~~~lIF~pgfst~~--~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g 512 (670)
T PRK10547 462 SDEEVGMLIFAPGFSTAE--QVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQG 512 (670)
T ss_pred CHHHHHHHhhcCCccccc--ccccCCCCchhHHHHHHHHHHcCCEEEEEecCC
Confidence 1222344332 11223446888742 2235788888888653
No 79
>PRK03660 anti-sigma F factor; Provisional
Probab=93.11 E-value=0.34 Score=45.50 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcccccCC-----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCH
Q 004874 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA-----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ 304 (726)
.+..++.||+.||+..+. ..+.|.+.. ..+...++|.|+|.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~------~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI------EEEELEITVRDEGKGIED 88 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------CCCEEEEEEEEccCCCCh
Confidence 356889999999997642 346666542 223567899999999976
No 80
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.03 E-value=0.25 Score=61.62 Aligned_cols=94 Identities=11% Similarity=0.162 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHcccccCCC-ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 254 WIFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt-~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
.+..+|..||+||+++... .+.|.+...... .....-.|.|.|||.||+++++.+.+.-.+..+. ...-+..|+|
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~-~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~---~~~~~G~GLG 903 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHID-DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA---GRQQTGSGLG 903 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeec-CCceEEEEEEEEcCCCCCHHHHHHhhcccccccc---CCCCCCcCch
Confidence 3567899999999999653 445544321000 0112245789999999999999998762222221 1112346888
Q ss_pred eeeec---ccccCeEEEEEeeC
Q 004874 333 FKTGA---MRLGKDALVLTQTA 351 (726)
Q Consensus 333 FKSA~---mrLG~~V~V~TK~~ 351 (726)
+..+- -.+|.++.|.|...
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCC
Confidence 75431 24688888887654
No 81
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=92.73 E-value=0.18 Score=49.38 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHcccccCC-----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccc
Q 004874 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA-----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGq 328 (726)
...-|+.||+.||+..+- ..|.|.+.. ..+...+.|.|+|.|++++.+...+........ .+....|
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~-~~~~~~~- 113 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHI------YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEP-IDDLREG- 113 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------eCCEEEEEEEEcccccCchhhccccCCCCCCCC-cccCCCC-
Confidence 466799999999998852 356666653 234678899999999998876654332111111 0111223
Q ss_pred ccceeeeecccccCeEEEEE
Q 004874 329 FGVGFKTGAMRLGKDALVLT 348 (726)
Q Consensus 329 FGvGFKSA~mrLG~~V~V~T 348 (726)
|.|++..- .|.+++.+.+
T Consensus 114 -G~GL~Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 114 -GLGLFLIE-TLMDEVEVYE 131 (159)
T ss_pred -ccCHHHHH-HhccEEEEEe
Confidence 77775432 4677777764
No 82
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.32 E-value=0.14 Score=55.70 Aligned_cols=48 Identities=25% Similarity=0.434 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHccccc-CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh
Q 004874 253 GWIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (726)
Q Consensus 253 ~~pf~ALaELIDNA~DA-gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee 306 (726)
..++-++.|.|.|++.. .|+++.|.+.. .++.-.|+|.|||.|.+.+.
T Consensus 278 ~~l~rivQEaltN~~rHa~A~~v~V~l~~------~~~~l~l~V~DnG~Gf~~~~ 326 (365)
T COG4585 278 DALFRIVQEALTNAIRHAQATEVRVTLER------TDDELRLEVIDNGVGFDPDK 326 (365)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEEEEE------cCCEEEEEEEECCcCCCccc
Confidence 45889999999999986 68999999984 23468999999999988763
No 83
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.83 E-value=0.68 Score=55.88 Aligned_cols=101 Identities=24% Similarity=0.368 Sum_probs=65.4
Q ss_pred eeecCHHHHHHhhccccCCHHHHHHHHHHcccccCC--------------CccEEEEEEcccccCCCCcCEEEEEeCCCC
Q 004874 236 FVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHG 301 (726)
Q Consensus 236 ~~~v~pk~L~slstsh~~~pf~ALaELIDNA~DAgA--------------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~G 301 (726)
..-++..+|..++ ..|--||-||+|.|- -.|.+.-.. .++.-.|.|.|||.|
T Consensus 422 ~telDksIlE~l~--------dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~------~gn~ivIev~DDG~G 487 (716)
T COG0643 422 DTELDKSILERLG--------DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH------EGNNIVIEVSDDGAG 487 (716)
T ss_pred CeeehHHHHHHhc--------ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEc------CCCeEEEEEeeCCCC
Confidence 3556666776654 345689999999972 244444432 345567799999999
Q ss_pred CCHHhHHhh-hh---------------------c--ccCCCCCCCCCcccccccee---eeecccccCeEEEEEeeCC
Q 004874 302 MTHQDVVRM-TY---------------------F--GHKQPDADDPNRIGRFGVGF---KTGAMRLGKDALVLTQTAD 352 (726)
Q Consensus 302 Mt~eeL~~~-l~---------------------F--G~S~K~~~d~~~IGqFGvGF---KSA~mrLG~~V~V~TK~~g 352 (726)
|+++.+.+- +. | |+|.+. ..+-+.--|||+ |+..-+||..+.|.|+...
T Consensus 488 id~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~--~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~ 563 (716)
T COG0643 488 IDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAE--QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGK 563 (716)
T ss_pred CCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcch--hhhcccCCccCHHHHHHHHHHcCCEEEEEecCCC
Confidence 999987642 21 1 444432 233444458896 4555578999999887654
No 84
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.65 E-value=0.27 Score=56.28 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcccccC-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH
Q 004874 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 255 pf~ALaELIDNA~DAg-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 305 (726)
...++.||++||..+. +..|.|.+.. .++.-.|+|.|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~------~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQ------QDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCEEEEEEEECCCCCCcC
Confidence 5678999999999874 4667776653 2245679999999999865
No 85
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.46 E-value=0.27 Score=56.57 Aligned_cols=46 Identities=17% Similarity=0.352 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHcccccC-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH
Q 004874 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAg-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 305 (726)
+....+.|+|+||+.+. ++.|.|.+.. .++.-.|.|.|||.||+++
T Consensus 469 ~l~~il~ell~NA~kha~a~~i~V~~~~------~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 469 HLLQIAREALSNALKHAQASEVVVTVAQ------NQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCcc
Confidence 46788999999999874 5677777653 2345689999999999875
No 86
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.21 E-value=0.34 Score=50.30 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcccccCC-----CccEEEEEEcccccCCCC-cCEEEEEeCCCCCCHH
Q 004874 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKD-IPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA-----t~V~I~I~~~~d~~~~~~-~~~L~I~DNG~GMt~e 305 (726)
+--++.||+.||+..++ .+|.|.+... ..+ ...++|+|||.|++.+
T Consensus 123 Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~-----~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 123 LGLIVHELVTNALKHAFLSRPGGEIRITLSRE-----GDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-----CCCCeEEEEEEECCCCCCCC
Confidence 45789999999999865 4677777641 112 3789999999999764
No 87
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=90.20 E-value=0.17 Score=46.46 Aligned_cols=45 Identities=16% Similarity=0.538 Sum_probs=35.5
Q ss_pred Ccccccc-CC--CCCchhhhHHHHHHHhhcCCeEEEEEece------eEEEEeC
Q 004874 70 SHCFLSP-AP--ECSRDHNEWRRFLIYLQGRDMVAIAKFKF------WEFYILP 114 (726)
Q Consensus 70 ~~~~~~p-~~--~~~~~~~ew~~f~~~l~~~~~~~~~~~~~------~~~~~~~ 114 (726)
-.+++.+ .| .++.+...+.+|..||...+|+|||.++. ..|||+|
T Consensus 66 ~v~v~~~~~~~~~~~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 66 DVCVVALSSPESDSNSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred eEEEEEEcCCcccCHHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 4455555 34 67888999999999999999999999995 8899998
No 88
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.95 E-value=0.88 Score=55.24 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=43.6
Q ss_pred HHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCC
Q 004874 256 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP 318 (726)
Q Consensus 256 f~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K 318 (726)
..+|..|||||.....+..+|.|.-.. ..+.-.+.|.|+|.|++.+++.+.|. |-...+
T Consensus 777 eQVLiNLleNA~Kyap~~s~I~I~~~~----~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~ 836 (890)
T COG2205 777 EQVLINLLENALKYAPPGSEIRINAGV----ERENVVFSVIDEGPGIPEGELERIFDKFYRGNK 836 (890)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEEEEE----ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCC
Confidence 478899999999987655444444211 23567889999999999999999986 544443
No 89
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=88.74 E-value=0.63 Score=52.78 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHcccccCC----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhh
Q 004874 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (726)
.|--.|-=||+||+-||- ....|.+.... ..+.-.+.|.|||.||+++......
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~----~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKK----QDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEE----cCCEEEEEEeeCCCCCChhHHHHHH
Confidence 577888999999999973 33445544211 2356788999999999998776653
No 90
>PRK13560 hypothetical protein; Provisional
Probab=88.61 E-value=0.49 Score=55.44 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=31.8
Q ss_pred HHHHHHHHHcccccCC-----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH
Q 004874 256 FGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 256 f~ALaELIDNA~DAgA-----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 305 (726)
...|.+|+.||+.+.. ..|.|.+.. .+.+.-.|+|.|||+||+++
T Consensus 713 ~~il~NLl~NAik~~~~~~~~~~i~i~~~~-----~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 713 GLIISELLSNALKHAFPDGAAGNIKVEIRE-----QGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEEEE-----cCCCEEEEEEEeCCCcCCcc
Confidence 3478899999999742 345555542 12345678999999999986
No 91
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=86.61 E-value=0.7 Score=51.52 Aligned_cols=71 Identities=17% Similarity=0.369 Sum_probs=50.1
Q ss_pred HHHHHHHHHcccccC--CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccccccce
Q 004874 256 FGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 256 f~ALaELIDNA~DAg--At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IGqFGvG 332 (726)
...|-.+|.||+-.. ..+|.|.+.. ....-.++|.|.|.|++++++.+.+. |-.-.+. .....|--|+|
T Consensus 344 tQVldNii~NA~KYsP~Gg~Itv~~~~------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA--RsR~~gGTGLG 415 (459)
T COG5002 344 TQVLDNIISNALKYSPDGGRITVSVKQ------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA--RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEee------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh--hhhcCCCCchh
Confidence 466788999999875 4567776663 22346789999999999999999985 5443332 23456666777
Q ss_pred ee
Q 004874 333 FK 334 (726)
Q Consensus 333 FK 334 (726)
+.
T Consensus 416 La 417 (459)
T COG5002 416 LA 417 (459)
T ss_pred HH
Confidence 74
No 92
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=85.58 E-value=1.8 Score=42.32 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHcccccCC------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcc
Q 004874 253 GWIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRI 326 (726)
Q Consensus 253 ~~pf~ALaELIDNA~DAgA------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~I 326 (726)
...-.|+.|++.|++.++- ..|.|.... ..+...++|+|.|.|+ +++...+.-+.... .....
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~------~~~~~~i~i~D~G~~~--~~~~~~~~~~~~~~---~~~~~ 107 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL------DDGKLEIRIWDQGPGI--EDLEESLGPGDTTA---EGLQE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE------cCCeEEEEEEeCCCCC--CCHHHhcCCCCCCC---ccccc
Confidence 3467899999999998742 345554442 2356889999999665 44455444332211 12233
Q ss_pred ccccceeeeecccccCeEEEEEe
Q 004874 327 GRFGVGFKTGAMRLGKDALVLTQ 349 (726)
Q Consensus 327 GqFGvGFKSA~mrLG~~V~V~TK 349 (726)
| |.||. ...++.++|.+...
T Consensus 108 ~--G~Gl~-l~~~~~D~~~~~~~ 127 (146)
T COG2172 108 G--GLGLF-LAKRLMDEFSYERS 127 (146)
T ss_pred c--cccHH-HHhhhheeEEEEec
Confidence 4 66662 33456677777643
No 93
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=82.94 E-value=1.7 Score=51.49 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcccccCC---------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh
Q 004874 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA---------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
+-.++-.||.||.+|.+ ..+.+..+. .++.-.+.|.|||.|.+.+..++.+-
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~------~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDD------ADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEec------CCCeEEEEEecCCCCCChHHhhhhcc
Confidence 34788999999999843 113333331 34567889999999999999999875
No 94
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=80.91 E-value=2.9 Score=48.18 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHcccccCC---CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccC
Q 004874 254 WIFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHK 316 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA---t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S 316 (726)
.....+-.|+-||+||.. +.|+|.... ...+..+|.|.|||.|-..+-+.+.+. |..|
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~-----~~~e~l~i~i~DnGqGwp~~l~dkLl~PFtts 625 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALG-----TEQEMLRIAIIDNGQGWPHELVDKLLTPFTTS 625 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeec-----CcccceEEEEecCCCCCchhHHHHhcCCcccc
Confidence 467888999999999975 445554442 134567889999999999998889887 4443
No 95
>PRK13559 hypothetical protein; Provisional
Probab=80.15 E-value=1.8 Score=46.25 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcccccCC-----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH
Q 004874 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA-----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 305 (726)
+..+|.||+.||+.+++ ..|.|.+... ...+...|.+.|||.|++++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~----~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPS----PEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEec----CCCCeEEEEEECCCCCCCCC
Confidence 45789999999999853 3566665211 12345788899999998664
No 96
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=78.96 E-value=2.4 Score=48.10 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH
Q 004874 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 305 (726)
....+.||+.||+.+.. ..+.|.+.. . ..+.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~--~---~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVT--N---PDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEE--c---CCCEEEEEEEECCcCcCCC
Confidence 45688999999998643 456666552 1 1245678999999999874
No 97
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=73.13 E-value=5.3 Score=47.64 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred ceeeecCHHHHHHhhccccCCHHHHHHHHHHcccccCC---CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhh
Q 004874 234 KNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM 310 (726)
Q Consensus 234 ~~~~~v~pk~L~slstsh~~~pf~ALaELIDNA~DAgA---t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~ 310 (726)
...+++.| |..+...-. -.-.....||.||+-.+. +.|.|..+. .....++.|.|||+|++++-+.+.
T Consensus 619 gaei~i~~--lp~v~~d~~-~l~qv~~NLi~Naik~~~~e~~~i~I~~~r------~ed~~t~sV~dng~Gi~~a~~~ri 689 (750)
T COG4251 619 GAEIRIAP--LPVVAADAT-QLGQVFQNLIANAIKFGGPENPDIEISAER------QEDEWTFSVRDNGIGIDPAYFERI 689 (750)
T ss_pred cceEEecc--cceeecCHH-HHHHHHHHHHhhheecCCCCCCceEEeeec------cCCceEEEecCCCCCcCHHHHHHH
Confidence 33344444 444433331 244566889999998864 556776653 235689999999999999999998
Q ss_pred hh
Q 004874 311 TY 312 (726)
Q Consensus 311 l~ 312 (726)
+.
T Consensus 690 F~ 691 (750)
T COG4251 690 FV 691 (750)
T ss_pred HH
Confidence 76
No 99
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=65.25 E-value=14 Score=41.30 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=32.7
Q ss_pred HHHHHHHccc-ccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh
Q 004874 258 AIAELVDNSR-DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR 309 (726)
Q Consensus 258 ALaELIDNA~-DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~ 309 (726)
.+-|-+.|-- -|+|++|.|.+.. ..+.-.+.|.|||.|.+..+..+
T Consensus 363 v~QEaltNIErHa~Atrv~ill~~------~~d~vql~vrDnG~GF~~~~~~~ 409 (459)
T COG4564 363 VVQEALTNIERHAGATRVTILLQQ------MGDMVQLMVRDNGVGFSVKEALQ 409 (459)
T ss_pred HHHHHHHHHHhhcCCeEEEEEecc------CCcceEEEEecCCCCccchhhcc
Confidence 3344444433 3589999998873 34678999999999998876543
No 100
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=62.41 E-value=8.9 Score=43.29 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHcccc-cCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH
Q 004874 254 WIFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 254 ~pf~ALaELIDNA~D-AgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 305 (726)
.++..+-|++.|-.. |.|+.|+|.+-. +++.-+|.|.|||.|++..
T Consensus 410 TLyRl~QE~LNNI~KHA~AS~V~i~l~~------~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKHADASAVTIQLWQ------QDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhccccceEEEEEee------CCcEEEEEEecCCcCCCCC
Confidence 578899999999885 689999998863 3345789999999998764
No 101
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=58.11 E-value=14 Score=40.90 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcccccCCC----ccEEEEEEccc------ccCCCCcCEEEEEeCCCCCCHHhHHhhhh
Q 004874 255 IFGAIAELVDNSRDAKAT----KLEISIESIYF------KKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt----~V~I~I~~~~d------~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
+..++-.||.||..|.+. .=.|.+.+.+- .....-...|.|.|||-|++.+-....|.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~ 309 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFY 309 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccc
Confidence 568999999999999762 11222221100 00011234577999999999887777765
No 102
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=49.84 E-value=15 Score=42.71 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHccccc---C--CCccEEEEEEcccccCCCCcCEEEEEeCCC---CCCHHhHHhhhhcccCCC---CCC
Q 004874 253 GWIFGAIAELVDNSRDA---K--ATKLEISIESIYFKKAGKDIPMLSIIDDGH---GMTHQDVVRMTYFGHKQP---DAD 321 (726)
Q Consensus 253 ~~pf~ALaELIDNA~DA---g--At~V~I~I~~~~d~~~~~~~~~L~I~DNG~---GMt~eeL~~~l~FG~S~K---~~~ 321 (726)
.-|..||||+|-||+=. . ...|+|.+. ...|.|+-.|. ||+++++.+..++-.-.. -..
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iy----------dDRieI~NPGgl~~gi~~~~l~~~~s~~RNp~LA~~l~ 338 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIY----------DDRIEITNPGGLPPGITPEDLLKGRSKSRNPVLAKVLR 338 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEE----------CCeEEEECCCCCCCCCChhHcccCCCcccCHHHHHHHH
Confidence 34889999999999844 2 236777665 36899998786 888888766421111000 012
Q ss_pred CCCccccccceee
Q 004874 322 DPNRIGRFGVGFK 334 (726)
Q Consensus 322 d~~~IGqFGvGFK 334 (726)
+.+.|-++|.|+.
T Consensus 339 ~~~liE~~GSGi~ 351 (467)
T COG2865 339 DMGLIEERGSGIR 351 (467)
T ss_pred HhhhHHHhCccHH
Confidence 5678889999985
No 103
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=41.99 E-value=56 Score=40.39 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHcccc-c---CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhH
Q 004874 254 WIFGAIAELVDNSRD-A---KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (726)
Q Consensus 254 ~pf~ALaELIDNA~D-A---gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL 307 (726)
-++..+-|.+.||.| . .-..+.+.|+ .+...+.|.+||.|+.-+..
T Consensus 53 Gl~ki~dEilvNaadk~rd~~m~~i~v~i~--------~e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 53 GLYKIFDEILVNAADKQRDPKMNTIKVTID--------KEKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred cHHHHHHHHhhcccccccCCCcceeEEEEc--------cCCCEEEEEeCCCcceeeec
Confidence 466778999999999 2 2245666665 25689999999999987653
No 104
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=38.34 E-value=13 Score=35.45 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=13.9
Q ss_pred chhhhHHHHHHHhhcCC
Q 004874 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 91 ~s~~~WdRFMRFMeRYA 107 (113)
T PRK13610 91 NSEEAFERFMRFASRYA 107 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998775
No 105
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=36.55 E-value=16 Score=34.65 Aligned_cols=17 Identities=24% Similarity=0.821 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004874 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 84 ~s~~~WdRFMRFmeRYA 100 (109)
T TIGR03047 84 KSEDEWDRFMRFMERYA 100 (109)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 106
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=36.25 E-value=31 Score=40.35 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcccccCC------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH
Q 004874 255 IFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 305 (726)
|.-.|-=||+||+-.|- -.|.|.+.. .+..-.+.|+|||.|+.++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~------~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEK------EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEE------eCCeEEEEEecCCCCcCCC
Confidence 44557789999998863 467777664 2235789999999999996
No 107
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=35.39 E-value=14 Score=34.93 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=12.8
Q ss_pred hhhHHHHHHHhhcCC
Q 004874 84 HNEWRRFLIYLQGRD 98 (726)
Q Consensus 84 ~~ew~~f~~~l~~~~ 98 (726)
..+|++||||+.+++
T Consensus 86 ~~~WdRFMRFMeRYA 100 (108)
T PF03912_consen 86 EEEWDRFMRFMERYA 100 (108)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999998764
No 108
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=34.40 E-value=18 Score=34.33 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004874 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 85 ~s~~~WdRFMRFMeRYA 101 (111)
T PLN00039 85 RSPREWDRFMRFMERYA 101 (111)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 109
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=33.45 E-value=20 Score=34.26 Aligned_cols=17 Identities=24% Similarity=0.792 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004874 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T PRK13612 87 KSEQEWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 110
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=32.72 E-value=21 Score=33.66 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=14.1
Q ss_pred chhhhHHHHHHHhhcCC
Q 004874 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 80 ~s~~~wdRFMRFmeRYA 96 (104)
T PRK13611 80 ETEAEWDRFLRFMERFS 96 (104)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35679999999998875
No 111
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=32.56 E-value=12 Score=43.90 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=21.6
Q ss_pred chhhHHhHHH-HHhhCCCCchhHHHHh
Q 004874 393 EATAKYNLKS-IKEFSPFNKYLIGEKA 418 (726)
Q Consensus 393 e~~~~~~Le~-I~KYSpF~s~pI~e~~ 418 (726)
+|+.++.|+. |+|||.|+++||+.+.
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~ 27 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWV 27 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred CcccHHHHHHHHHhhccccccceeEee
Confidence 4677888877 9999999999998653
No 112
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=32.24 E-value=21 Score=34.06 Aligned_cols=17 Identities=18% Similarity=0.729 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004874 82 RDHNEWRRFLIYLQGRD 98 (726)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (726)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T CHL00128 87 KNPEAWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 113
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=28.94 E-value=27 Score=27.47 Aligned_cols=34 Identities=24% Similarity=0.742 Sum_probs=22.0
Q ss_pred CCCCceecCccchhhccCCC-CCC--C-CCCCCCceec
Q 004874 613 KPDQEWVQCNKCRKWRMLDP-GFD--T-KSLPVEWFCY 646 (726)
Q Consensus 613 ~~~~~WVQCD~ClKWR~LP~-~~~--~-~~lp~~W~C~ 646 (726)
..+..|||||.|..|--+.= +.. . ......|+|.
T Consensus 9 ~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 9 DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc
Confidence 34679999999999976542 111 1 2233489985
No 114
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=26.79 E-value=69 Score=33.69 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=50.6
Q ss_pred CCccccccccccccee---eccCCCccccccCCCCCchhhhHHHHHHHhhcCCeEEEEEecee-----EEEEeCCC
Q 004874 49 LPHHWNVNDIVPTSKI---ILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFW-----EFYILPPD 116 (726)
Q Consensus 49 ~p~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~~~~~~~-----~~~~~~~~ 116 (726)
-+..+.|.+|+|.+-+ -+.+.++++. |.........--.-+.+=|...++|||+++-.- .|..|-|.
T Consensus 87 ~~~~l~ilgF~~~~~i~~~~~~~~s~~l~-P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~ 161 (272)
T cd00594 87 TSKGLDILGFVPASEIPPYYFDKESYYLV-PDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQ 161 (272)
T ss_pred CCCeEEEEeEechHhCCcceecCCcEEEE-cCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEecc
Confidence 4567889999999988 3555566666 777555666677888899999999999998654 36666665
No 115
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=24.35 E-value=83 Score=30.36 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=46.7
Q ss_pred Cccccccccccccee-e--ccCCCccccccCCCC-CchhhhHHHHHHHhhcCCeEEEEEece-----eEEEEeCCC
Q 004874 50 PHHWNVNDIVPTSKI-I--LDGMSHCFLSPAPEC-SRDHNEWRRFLIYLQGRDMVAIAKFKF-----WEFYILPPD 116 (726)
Q Consensus 50 p~~~~~~~~~~~~~~-~--~~~~~~~~~~p~~~~-~~~~~ew~~f~~~l~~~~~~~~~~~~~-----~~~~~~~~~ 116 (726)
+..+.|.+|+|.+-+ . +.++++.+. |.+.. .....--.-+.+=|...++||||++-. -.+-.|-|.
T Consensus 35 ~~~l~ilgF~~~~~i~~~~~~~~s~~i~-P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P~ 109 (140)
T smart00559 35 EPGLELLGFKPLSSLPPYYFLRPSYFLV-PDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRPY 109 (140)
T ss_pred CCeEEEEeecChHHCCHhHccCCcEEEe-eCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEee
Confidence 578899999999988 2 445556666 77753 224445556777789999999999932 466666665
No 116
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=21.63 E-value=42 Score=36.24 Aligned_cols=29 Identities=21% Similarity=0.795 Sum_probs=22.1
Q ss_pred ceecCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 004874 617 EWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 617 ~WVQCD~--Cl-KWR~LP~-~~~~~~lp~~W~C~ 646 (726)
.-|.||. |. .|=-++= |+. ..-.++|||.
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVGL~-~~PkgkWyC~ 263 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVGLK-TKPKGKWYCP 263 (274)
T ss_pred cccccCCCCCCcceEEEeccccc-cCCCCcccch
Confidence 7899997 99 9988873 333 4456789996
No 117
>PF04008 Adenosine_kin: Adenosine specific kinase; InterPro: IPR007153 The structure of a member of this family from the hyperthermophilic archaeon Pyrobaculum aerophilum contains a modified histidine residue which is interpreted as stable phosphorylation. In vitro binding studies confirmed that adenosine and AMP but not ADP or ATP bind to the protein [].; PDB: 1VGG_A 1RLH_A 1WVQ_A 2GL0_F 2JB7_B 2EKM_C 2D16_D.
Probab=21.31 E-value=49 Score=33.05 Aligned_cols=12 Identities=58% Similarity=1.146 Sum_probs=11.2
Q ss_pred CCCcceEEEEec
Q 004874 544 DTGRGVIGVIDV 555 (726)
Q Consensus 544 ~~GrGVIGVvE~ 555 (726)
..||||+||||-
T Consensus 118 ~~GrgvlGVvDG 129 (155)
T PF04008_consen 118 EQGRGVLGVVDG 129 (155)
T ss_dssp SSEEEEEEEEES
T ss_pred CCCcEEEEEEcC
Confidence 689999999998
Done!