Query 004874
Match_columns 726
No_of_seqs 399 out of 2235
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 08:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmq_A Heat shock protein HSP 99.9 8.9E-27 3E-31 238.4 9.6 174 233-417 17-220 (239)
2 3peh_A Endoplasmin homolog; st 99.9 1.4E-26 4.8E-31 241.6 9.9 173 234-417 25-229 (281)
3 3ied_A Heat shock protein; HSP 99.9 2.9E-26 1E-30 236.3 9.8 179 226-416 18-269 (272)
4 1qy5_A Endoplasmin; GRP94, NEC 99.9 3.5E-25 1.2E-29 230.2 7.0 168 237-416 10-213 (269)
5 3t0h_A Heat shock protein HSP 99.9 1.4E-24 4.7E-29 220.9 8.6 174 232-416 9-212 (228)
6 2gqp_A Endoplasmin; GRP94, HSP 99.9 3E-24 1E-28 219.0 9.0 171 234-416 11-217 (236)
7 3o0i_A HSP90AA1 protein; HSP90 99.9 2.9E-24 9.8E-29 221.9 8.8 174 233-417 38-241 (256)
8 2wer_A ATP-dependent molecular 99.9 1.7E-23 5.7E-28 210.6 10.1 170 236-416 7-207 (220)
9 2cg9_A ATP-dependent molecular 99.9 4.1E-23 1.4E-27 237.0 14.2 172 235-417 6-208 (677)
10 1y4s_A Chaperone protein HTPG; 99.9 2.9E-23 9.8E-28 234.4 12.4 174 234-416 6-210 (559)
11 1yc1_A HSP 86, heat shock prot 99.9 2.7E-23 9.1E-28 215.5 10.0 169 237-416 50-248 (264)
12 2ioq_A Chaperone protein HTPG; 99.9 5.1E-23 1.7E-27 234.9 7.6 171 236-415 8-209 (624)
13 2o1u_A Endoplasmin; GRP94, HSP 99.9 8.9E-23 3.1E-27 234.0 7.2 167 237-415 27-229 (666)
14 2ior_A Chaperone protein HTPG; 99.9 2.1E-22 7.1E-27 205.1 8.7 170 237-415 29-229 (235)
15 2e61_A Zinc finger CW-type PWW 99.6 7.1E-17 2.4E-21 136.4 4.9 54 610-663 10-67 (69)
16 2l7p_A Histone-lysine N-methyl 99.6 2.5E-16 8.5E-21 141.5 -0.0 58 609-666 19-79 (100)
17 1b63_A MUTL; DNA mismatch repa 99.5 6.1E-14 2.1E-18 149.3 11.9 140 234-387 3-150 (333)
18 3h4l_A DNA mismatch repair pro 99.5 8.2E-14 2.8E-18 150.6 9.1 139 236-387 6-150 (367)
19 1h7s_A PMS1 protein homolog 2; 99.4 2.9E-13 9.8E-18 146.1 9.2 140 236-387 15-160 (365)
20 3na3_A DNA mismatch repair pro 99.3 2.2E-12 7.7E-17 138.6 8.9 139 236-387 9-154 (348)
21 3fv5_A DNA topoisomerase 4 sub 98.9 4.9E-09 1.7E-13 104.6 9.0 121 255-389 18-156 (201)
22 4duh_A DNA gyrase subunit B; s 98.5 1.6E-07 5.6E-12 95.1 9.4 122 254-390 35-173 (220)
23 1mu5_A Type II DNA topoisomera 98.5 2E-07 7E-12 103.7 10.3 133 254-390 32-179 (471)
24 1s16_A Topoisomerase IV subuni 98.5 1.7E-07 5.9E-12 102.1 8.9 120 256-389 33-170 (390)
25 1ei1_A DNA gyrase B, GYRB; ATP 98.5 4.1E-07 1.4E-11 99.2 11.6 121 254-389 34-171 (391)
26 4emv_A DNA topoisomerase IV, B 98.5 3.8E-07 1.3E-11 92.8 10.1 141 233-390 21-180 (226)
27 2zbk_B Type 2 DNA topoisomeras 98.5 3.7E-07 1.3E-11 103.1 10.0 133 254-390 31-178 (530)
28 1kij_A DNA gyrase subunit B; t 98.4 2.7E-07 9.3E-12 100.5 5.6 121 254-388 32-170 (390)
29 3cwv_A DNA gyrase, B subunit, 98.3 4.3E-07 1.5E-11 98.3 6.3 118 254-389 30-160 (369)
30 1zxm_A TOPO IIA ATPase, DNA to 98.2 1.5E-06 5E-11 95.2 8.3 126 254-390 52-195 (400)
31 2q2e_B Type 2 DNA topoisomeras 98.2 1.1E-06 3.6E-11 101.0 6.6 131 254-389 37-181 (621)
32 3lnu_A Topoisomerase IV subuni 98.1 2.2E-06 7.4E-11 94.1 5.7 120 256-389 52-189 (408)
33 1pvg_A DNA topoisomerase II; G 97.9 1.7E-05 5.9E-10 87.2 7.7 125 254-390 64-208 (418)
34 3ttz_A DNA gyrase subunit B; p 97.9 4E-05 1.4E-09 76.3 9.4 110 254-389 31-145 (198)
35 1id0_A PHOQ histidine kinase; 97.7 8.2E-05 2.8E-09 67.3 7.9 84 255-349 45-131 (152)
36 1bxd_A ENVZ(290-450), protein 97.7 0.0001 3.6E-09 67.8 8.1 87 255-350 48-137 (161)
37 2c2a_A Sensor histidine kinase 97.3 0.00024 8.2E-09 70.2 6.7 89 255-350 139-235 (258)
38 2q8g_A [pyruvate dehydrogenase 97.3 0.00021 7E-09 76.9 6.6 90 255-350 244-350 (407)
39 4ew8_A Sensor protein DIVL; si 97.3 0.00046 1.6E-08 68.1 7.5 82 255-349 156-242 (268)
40 1th8_A Anti-sigma F factor; SP 97.2 0.00039 1.3E-08 63.2 6.3 82 254-349 39-125 (145)
41 2e0a_A Pyruvate dehydrogenase 97.2 0.00032 1.1E-08 75.1 6.2 90 255-350 231-337 (394)
42 2btz_A Pyruvate dehydrogenase 97.2 0.00027 9.2E-09 75.6 5.6 90 255-350 232-337 (394)
43 1ysr_A Sensor-type histidine k 97.2 0.00083 2.8E-08 60.8 8.0 85 255-349 47-135 (150)
44 3jz3_A Sensor protein QSEC; he 97.2 0.00024 8.2E-09 67.7 4.6 70 255-336 118-187 (222)
45 3a0y_A Sensor protein; ATP-LID 97.2 0.00031 1.1E-08 63.2 5.0 82 255-349 48-135 (152)
46 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.00021 7.3E-09 76.1 4.2 91 254-350 238-360 (388)
47 1y8o_A [pyruvate dehydrogenase 97.1 0.00032 1.1E-08 76.0 5.4 90 255-350 254-361 (419)
48 1i58_A Chemotaxis protein CHEA 97.1 0.00019 6.6E-09 67.8 3.2 47 255-307 48-108 (189)
49 3d36_A Sporulation kinase B; G 97.1 0.00078 2.7E-08 65.0 7.0 84 255-350 124-212 (244)
50 3sl2_A Sensor histidine kinase 97.0 0.00068 2.3E-08 63.4 5.7 91 255-350 44-139 (177)
51 3zxo_A Redox sensor histidine 97.0 0.0011 3.7E-08 58.5 6.4 46 254-306 43-89 (129)
52 1r62_A Nitrogen regulation pro 97.0 0.00029 9.9E-09 63.8 2.6 89 255-350 49-147 (160)
53 1b3q_A Protein (chemotaxis pro 96.7 0.0015 5E-08 70.1 6.0 88 256-351 108-236 (379)
54 3ehh_A Sensor kinase (YOCF pro 96.6 0.0011 3.8E-08 63.4 3.7 47 255-307 131-178 (218)
55 3a0r_A Sensor protein; four he 96.6 0.0013 4.6E-08 66.8 4.4 82 255-349 245-332 (349)
56 3ehg_A Sensor kinase (YOCF pro 96.4 0.0021 7.3E-08 57.3 3.7 47 255-307 41-88 (128)
57 3zxq_A Hypoxia sensor histidin 95.9 0.0056 1.9E-07 53.6 4.2 46 254-306 39-85 (124)
58 4gfh_A DNA topoisomerase 2; to 95.3 0.062 2.1E-06 66.0 11.6 122 255-389 60-202 (1177)
59 4gut_A Lysine-specific histone 92.7 0.015 5E-07 68.5 -1.3 46 616-661 91-146 (776)
60 4fpp_A Phosphotransferase; fou 92.5 0.13 4.6E-06 51.1 5.6 82 255-349 147-235 (247)
61 3o70_A PHD finger protein 13; 89.6 0.17 5.7E-06 42.3 2.5 32 615-646 30-62 (68)
62 1we9_A PHD finger family prote 89.6 0.12 4.2E-06 42.0 1.7 34 614-647 18-54 (64)
63 3o7a_A PHD finger protein 13 v 87.9 0.19 6.4E-06 39.5 1.6 32 615-646 15-47 (52)
64 2lv9_A Histone-lysine N-methyl 85.5 0.39 1.3E-05 42.6 2.5 33 615-647 39-72 (98)
65 1wee_A PHD finger family prote 84.9 0.51 1.7E-05 39.4 2.8 32 616-647 29-62 (72)
66 3ke6_A Protein RV1364C/MT1410; 84.1 0.8 2.8E-05 49.2 4.7 47 254-305 297-348 (399)
67 1ixm_A SPO0B, protein (sporula 73.4 1.5 5.3E-05 43.1 2.5 49 260-312 111-167 (192)
68 2kgg_A Histone demethylase jar 72.9 1.2 4.2E-05 34.9 1.3 35 612-646 12-49 (52)
69 3kqi_A GRC5, PHD finger protei 71.3 0.88 3E-05 38.2 0.2 34 614-647 21-57 (75)
70 2vpb_A Hpygo1, pygopus homolog 71.1 1.3 4.5E-05 36.6 1.2 16 612-627 18-34 (65)
71 2ri7_A Nucleosome-remodeling f 70.8 0.66 2.3E-05 44.4 -0.8 34 614-647 19-55 (174)
72 2xb1_A Pygopus homolog 2, B-ce 63.9 1.4 4.7E-05 39.6 -0.1 18 612-629 13-31 (105)
73 1wew_A DNA-binding family prot 63.1 1.9 6.7E-05 36.4 0.7 34 614-647 26-68 (78)
74 1wep_A PHF8; structural genomi 61.3 2.5 8.6E-05 35.7 1.1 33 614-646 23-58 (79)
75 2rsd_A E3 SUMO-protein ligase 57.6 5.5 0.00019 32.8 2.4 32 615-646 21-60 (68)
76 2k16_A Transcription initiatio 56.5 5.2 0.00018 33.2 2.1 32 615-646 30-63 (75)
77 1wem_A Death associated transc 53.3 3.8 0.00013 34.2 0.8 32 615-646 27-65 (76)
78 3pur_A Lysine-specific demethy 52.5 4.8 0.00017 45.6 1.7 36 612-647 52-90 (528)
79 1weu_A Inhibitor of growth fam 49.6 7.1 0.00024 34.4 2.0 30 616-646 47-80 (91)
80 1wen_A Inhibitor of growth fam 46.1 10 0.00034 31.7 2.3 30 616-646 27-60 (71)
81 1ow1_A Smart/HDAC1 associated 44.1 12 0.0004 37.4 2.8 29 88-116 128-163 (195)
82 3kv5_D JMJC domain-containing 43.5 3.6 0.00012 46.1 -1.1 34 614-647 48-84 (488)
83 3lqh_A Histone-lysine N-methyl 43.0 7.5 0.00026 38.2 1.2 16 616-631 19-34 (183)
84 2g6q_A Inhibitor of growth pro 39.0 10 0.00034 30.9 1.2 30 616-646 22-55 (62)
85 3c6w_A P28ING5, inhibitor of g 38.4 10 0.00036 30.5 1.2 30 616-646 20-53 (59)
86 2kvo_A Photosystem II reaction 34.1 9.7 0.00033 35.3 0.4 16 83-98 86-101 (120)
87 2jmi_A Protein YNG1, ING1 homo 33.0 20 0.00069 31.4 2.2 30 616-646 37-70 (90)
88 2vnf_A ING 4, P29ING4, inhibit 29.5 18 0.00061 29.1 1.2 30 616-646 21-54 (60)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 28.5 13 0.00044 32.9 0.2 11 618-628 2-12 (140)
90 2ar1_A Hypothetical protein; s 25.7 41 0.0014 32.9 3.2 23 518-556 62-84 (172)
91 3eop_A Thymocyte nuclear prote 24.2 45 0.0016 32.7 3.2 22 518-555 55-76 (176)
92 1zce_A Hypothetical protein AT 24.1 44 0.0015 32.2 3.0 22 518-556 47-68 (155)
93 2d16_A Hypothetical protein PH 23.9 29 0.001 33.5 1.7 13 543-555 123-135 (162)
94 2ekm_A Hypothetical protein ST 23.8 30 0.001 33.4 1.7 13 543-555 124-136 (162)
95 2eve_A Hypothetical protein ps 22.8 51 0.0018 31.8 3.2 23 518-556 44-66 (157)
96 1rlh_A Conserved hypothetical 22.7 32 0.0011 33.4 1.7 13 543-555 135-147 (173)
97 2gbs_A Hypothetical protein RP 22.4 50 0.0017 31.4 3.0 22 518-556 46-67 (145)
98 1vgg_A Conserved hypothetical 21.9 29 0.001 33.4 1.3 12 544-555 124-135 (161)
No 1
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.93 E-value=8.9e-27 Score=238.41 Aligned_cols=174 Identities=22% Similarity=0.278 Sum_probs=138.3
Q ss_pred CceeeecC-HHHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEE
Q 004874 233 EKNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSI 295 (726)
Q Consensus 233 ~~~~~~v~-pk~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I 295 (726)
....|+++ .+.|..++.+.|+....||||||+||+||.+ ..+.|.|.. + .+..+|+|
T Consensus 17 e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d----~~~~~L~I 90 (239)
T 3nmq_A 17 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP--N----PQERTLTL 90 (239)
T ss_dssp EEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE--E----TTTTEEEE
T ss_pred eeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE--e----CCccEEEE
Confidence 34557776 4677888999999999999999999999964 245666652 2 24689999
Q ss_pred EeCCCCCCHHhHHhhhh-cccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCC
Q 004874 296 IDDGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 366 (726)
Q Consensus 296 ~DNG~GMt~eeL~~~l~-FG~S~K--------~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG 366 (726)
.|||+||++++|.+.|+ ++.|.+ ...+...|||||+||||++| +|++|+|.||+++. .++.|.+ ++
T Consensus 91 ~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~ 165 (239)
T 3nmq_A 91 VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SA 165 (239)
T ss_dssp EECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CS
T ss_pred EeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CC
Confidence 99999999999987764 444321 12467899999999999988 99999999999764 4788988 56
Q ss_pred CceEEecCcc--CCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHHH
Q 004874 367 KDNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 367 ~~~i~VPi~~--~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e~ 417 (726)
.+.++|...+ ...+||+|+||++++. +|+.+++++. |+|||.|+.+||..+
T Consensus 166 ~g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~ 220 (239)
T 3nmq_A 166 GGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLY 220 (239)
T ss_dssp TTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEEC
T ss_pred CCcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEe
Confidence 6678775443 3368999999999875 7888899876 999999999998753
No 2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.93 E-value=1.4e-26 Score=241.61 Aligned_cols=173 Identities=23% Similarity=0.316 Sum_probs=137.3
Q ss_pred ceeeecCH-HHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEEE
Q 004874 234 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSII 296 (726)
Q Consensus 234 ~~~~~v~p-k~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I~ 296 (726)
.-.|++.- +.|..++.+.|+....||||||+||+||.+ ..+.|.|.. + .+..+|+|.
T Consensus 25 ~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~--d----~~~~tLtI~ 98 (281)
T 3peh_A 25 SHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA--N----KEKNILSIT 98 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE--E----TTTTEEEEE
T ss_pred eeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE--c----CCCcEEEEE
Confidence 34466664 566777888999999999999999999964 346666652 2 245899999
Q ss_pred eCCCCCCHHhHHhhhh-cccCCCC---------CCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCC
Q 004874 297 DDGHGMTHQDVVRMTY-FGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 366 (726)
Q Consensus 297 DNG~GMt~eeL~~~l~-FG~S~K~---------~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG 366 (726)
|||+||++++|.++|+ ++.|.+. ..+...|||||+||||+|| +|++|+|.||+.+. .++.|.+ .|
T Consensus 99 DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes--~g 173 (281)
T 3peh_A 99 DTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWES--TA 173 (281)
T ss_dssp ECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--ET
T ss_pred eCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEE--CC
Confidence 9999999999998774 5555321 2467899999999999988 99999999999874 5788988 45
Q ss_pred CceEEecCc---cCCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHHH
Q 004874 367 KDNLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 367 ~~~i~VPi~---~~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e~ 417 (726)
.+.++|... ....+||+|+|+++++. +|+.++.|+. |+|||.|+++||..+
T Consensus 174 ~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~ 229 (281)
T 3peh_A 174 DAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLL 229 (281)
T ss_dssp TSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEe
Confidence 567766433 24569999999999875 7888899876 999999999998754
No 3
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.93 E-value=2.9e-26 Score=236.28 Aligned_cols=179 Identities=26% Similarity=0.331 Sum_probs=138.4
Q ss_pred eeccCCCCceeeecCH-HHHHHhhccccCCHHHHHHHHHHcccccCC---------------------------------
Q 004874 226 VKQAGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA--------------------------------- 271 (726)
Q Consensus 226 ~~~~~~~~~~~~~v~p-k~L~slstsh~~~pf~ALaELIDNA~DAgA--------------------------------- 271 (726)
..+.++.....|+..- +.|..+..+.|+....||||||+||.||..
T Consensus 18 ~~~~~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (272)
T 3ied_A 18 YFQGSPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTE 97 (272)
T ss_dssp EETTEECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------
T ss_pred hccccccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhcccccccccccccccccccc
Confidence 3334444455566665 455666889999999999999999999942
Q ss_pred -------------------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCC--------C-CCC
Q 004874 272 -------------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADD 322 (726)
Q Consensus 272 -------------------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K--------~-~~d 322 (726)
..+.|.|.. | .+..+|+|.|||+||++++|.++|+ ++.|.+ . ..+
T Consensus 98 ~~~~~~~~~~~~~e~~~~~~~l~I~I~~--D----k~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d 171 (272)
T 3ied_A 98 NVNESTDKKENVEEEKNDIKKLIIKIKP--D----KEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKAD 171 (272)
T ss_dssp ----------------CGGGGCCEEEEE--E----TTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSC
T ss_pred ccccccccccccccccCCCCCcEEEEEE--e----CCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhccccc
Confidence 123455552 2 2467999999999999999999875 444421 1 146
Q ss_pred CCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCcc--------CCCCCcEEEEEecCcc-c
Q 004874 323 PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-E 393 (726)
Q Consensus 323 ~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~--------~e~~GT~I~l~lk~~s-e 393 (726)
...|||||+||||+|| +|++|+|.|| .+ ..++.|.+ +|.+.++|...+ ...+||+|+|||+++. +
T Consensus 172 ~~~IGqFGVGFySaFm-VAdkV~V~Sk-~d--d~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e 245 (272)
T 3ied_A 172 SNLIGQFGVGFYSSFL-VSNRVEVYTK-KE--DQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDE 245 (272)
T ss_dssp TTCGGGSCCGGGGGGG-TEEEEEEEEE-SS--SCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGG
T ss_pred ccccCcccceeheeec-cCCEEEEEEc-CC--CceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHH
Confidence 7899999999999988 9999999999 32 46899998 677788775433 3568999999999986 8
Q ss_pred hhhHHhHHH-HHhhCCCCchhHHH
Q 004874 394 ATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 394 ~~~~~~Le~-I~KYSpF~s~pI~e 416 (726)
|+.++.++. |+|||.|+.+||..
T Consensus 246 ~le~~~ik~likkys~fi~~PI~l 269 (272)
T 3ied_A 246 YLEDYKLKELIKKYSEFIKFPIEI 269 (272)
T ss_dssp GGSHHHHHHHHHHHCTTCCSCEEE
T ss_pred hcCHHHHHHHHHHHHhCCCCCeEE
Confidence 999999977 99999999999864
No 4
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.91 E-value=3.5e-25 Score=230.19 Aligned_cols=168 Identities=19% Similarity=0.301 Sum_probs=132.6
Q ss_pred eecC-HHHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEEEeCC
Q 004874 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (726)
Q Consensus 237 ~~v~-pk~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I~DNG 299 (726)
|++. .+.|+.++.+.|+.+..||+|||+||+||++ +.+.|.|.. + .+..+|+|.|||
T Consensus 10 Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~--d----~~~~~l~I~DnG 83 (269)
T 1qy5_A 10 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--D----KEKNLLHVTDTG 83 (269)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE--E----TTTTEEEEEECS
T ss_pred ehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE--c----CCceEEEEEECC
Confidence 4554 3466777888888999999999999999975 456677653 2 246799999999
Q ss_pred CCCCHHhHHhhhh-cccCCCC-------------CCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecC
Q 004874 300 HGMTHQDVVRMTY-FGHKQPD-------------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 365 (726)
Q Consensus 300 ~GMt~eeL~~~l~-FG~S~K~-------------~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~e 365 (726)
+||++++|.++|+ ++.|.+. ..+...||+||+||||++| +|++|.|+||+.+. .++.|.+ .
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~ 158 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 158 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--C
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--e
Confidence 9999999988774 5555210 1467799999999999988 99999999999875 4788877 5
Q ss_pred CCceEEecCcc---CCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHH
Q 004874 366 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 366 G~~~i~VPi~~---~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e 416 (726)
| +.+.|.... ...+||+|+|+++++. +|+..+.++. |++||.|+++||..
T Consensus 159 g-g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l 213 (269)
T 1qy5_A 159 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYV 213 (269)
T ss_dssp S-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEE
T ss_pred C-CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEE
Confidence 5 677664332 2468999999999864 6777888866 89999999999874
No 5
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.90 E-value=1.4e-24 Score=220.86 Aligned_cols=174 Identities=23% Similarity=0.286 Sum_probs=136.8
Q ss_pred CCceeeecCH-HHHHHhhccccCCHHHHHHHHHHcccccCCC----------------ccEEEEEEcccccCCCCcCEEE
Q 004874 232 LEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLS 294 (726)
Q Consensus 232 ~~~~~~~v~p-k~L~slstsh~~~pf~ALaELIDNA~DAgAt----------------~V~I~I~~~~d~~~~~~~~~L~ 294 (726)
.....|+++- +.|..++.+.|+.+..||+|||+||+||+++ .+.|.|.. + .+...|+
T Consensus 9 ~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~--d----~~~~~i~ 82 (228)
T 3t0h_A 9 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP--N----KQDRTLT 82 (228)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE--E----TTTTEEE
T ss_pred ccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE--e----CCeeEEE
Confidence 3455677774 6778889999999999999999999999763 46676652 2 2568999
Q ss_pred EEeCCCCCCHHhHHhhhh-cccCCCC--------CCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecC
Q 004874 295 IIDDGHGMTHQDVVRMTY-FGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 365 (726)
Q Consensus 295 I~DNG~GMt~eeL~~~l~-FG~S~K~--------~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~e 365 (726)
|.|||+||++++|..+|. +++|.+. ..+...||+||+||+|+++ ++++|.|.||+.+ ..++.|.+ +
T Consensus 83 V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~--~~~~~w~~--~ 157 (228)
T 3t0h_A 83 IVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND--DEQYAWES--S 157 (228)
T ss_dssp EEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT--SCEEEEEE--C
T ss_pred EEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCC--CCcEEEEE--c
Confidence 999999999999987764 5554321 1357899999999999977 9999999999986 35888887 5
Q ss_pred CCceEEecCc--cCCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHH
Q 004874 366 GKDNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 366 G~~~i~VPi~--~~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e 416 (726)
|...+.+... ....+||+|+|+|+.+. ++...+.++. |.+||.|..+||..
T Consensus 158 g~~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~ 212 (228)
T 3t0h_A 158 AGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 212 (228)
T ss_dssp STTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEE
T ss_pred CCceEEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEE
Confidence 5556666433 23468999999999875 7777778766 99999999999874
No 6
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.90 E-value=3e-24 Score=218.98 Aligned_cols=171 Identities=19% Similarity=0.292 Sum_probs=128.9
Q ss_pred ceeeecC-HHHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEEE
Q 004874 234 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSII 296 (726)
Q Consensus 234 ~~~~~v~-pk~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I~ 296 (726)
...|++. ...++.++.+.|+.+..||+|||+||+||+| +.+.|.|.. + .+...|+|.
T Consensus 11 ~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~--d----~~~~~i~I~ 84 (236)
T 2gqp_A 11 KFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--D----KEKNLLHVT 84 (236)
T ss_dssp EECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE--E----TTTTEEEEE
T ss_pred ccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE--c----CCCCEEEEE
Confidence 3446666 4567777888889999999999999999986 345666652 2 235799999
Q ss_pred eCCCCCCHHhHHhhhh-cccCCCCC-------------CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEee
Q 004874 297 DDGHGMTHQDVVRMTY-FGHKQPDA-------------DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQS 362 (726)
Q Consensus 297 DNG~GMt~eeL~~~l~-FG~S~K~~-------------~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~S 362 (726)
|||+||++++|.+.|. +++|.+.. .+...||+||+||+|++| +|++|+|.||+.+. .++.|.+
T Consensus 85 DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~~--~~~~w~~ 161 (236)
T 2gqp_A 85 DTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES 161 (236)
T ss_dssp ECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE
T ss_pred ECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCCC--ceEEEEE
Confidence 9999999999988774 66664310 356799999999999877 99999999999875 3678877
Q ss_pred ecCCCceEEecCcc---CCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHH
Q 004874 363 LNQGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 363 f~eG~~~i~VPi~~---~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e 416 (726)
++ +.+.+.... ...+||+|+|+++++. +++..+.++. |.+||.|+.+||..
T Consensus 162 --~g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~ 217 (236)
T 2gqp_A 162 --DS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYV 217 (236)
T ss_dssp --SS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEE
T ss_pred --eC-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEE
Confidence 55 566654332 2468999999999864 6777777765 99999999999874
No 7
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.90 E-value=2.9e-24 Score=221.85 Aligned_cols=174 Identities=23% Similarity=0.277 Sum_probs=136.7
Q ss_pred CceeeecCH-HHHHHhhccccCCHHHHHHHHHHcccccCCC----------------ccEEEEEEcccccCCCCcCEEEE
Q 004874 233 EKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSI 295 (726)
Q Consensus 233 ~~~~~~v~p-k~L~slstsh~~~pf~ALaELIDNA~DAgAt----------------~V~I~I~~~~d~~~~~~~~~L~I 295 (726)
....|++.- +.|..++.+.|+....||+|||+||+||+++ .+.|.|.. + .+...|+|
T Consensus 38 e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d----~~~~~I~I 111 (256)
T 3o0i_A 38 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP--N----KQDRTLTI 111 (256)
T ss_dssp EEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE--E----TTTTEEEE
T ss_pred eeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE--c----CCceEEEE
Confidence 345577764 5667778899999999999999999999763 56676652 2 25689999
Q ss_pred EeCCCCCCHHhHHhhhh-cccCCCC--------CCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCC
Q 004874 296 IDDGHGMTHQDVVRMTY-FGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 366 (726)
Q Consensus 296 ~DNG~GMt~eeL~~~l~-FG~S~K~--------~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG 366 (726)
.|||+||++++|..+|. ++.|.+. ..+...||+||+||+|+++ ++++|+|.||+.+ ..++.|.+ +|
T Consensus 112 ~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~--~~g~~w~s--~g 186 (256)
T 3o0i_A 112 VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND--DEQYAWES--SA 186 (256)
T ss_dssp EECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT--SCEEEEEE--CS
T ss_pred ecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCC--CceEEEEE--ec
Confidence 99999999999987764 4443221 1367899999999999987 9999999999976 35888988 55
Q ss_pred CceEEecCc--cCCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHHH
Q 004874 367 KDNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 367 ~~~i~VPi~--~~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e~ 417 (726)
.+.+.|... ....+||+|+|+++.+. ++++.+.++. |.+||.|+.+||..+
T Consensus 187 g~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~ 241 (256)
T 3o0i_A 187 GGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 241 (256)
T ss_dssp TTEEEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEEC
T ss_pred cceEEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEe
Confidence 566766433 23468999999999874 7888888866 999999999998743
No 8
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.89 E-value=1.7e-23 Score=210.63 Aligned_cols=170 Identities=22% Similarity=0.285 Sum_probs=131.6
Q ss_pred eeecC-HHHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEEEeC
Q 004874 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (726)
Q Consensus 236 ~~~v~-pk~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I~DN 298 (726)
.|+++ ...|+.++.+.|+.+..||+|||+||+||++ +.+.|.+.. + .+...|+|.||
T Consensus 7 ~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~--~----~~~~~i~I~Dn 80 (220)
T 2wer_A 7 EFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP--K----PEQKVLEIRDS 80 (220)
T ss_dssp ECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE--E----GGGTEEEEEEC
T ss_pred eeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE--C----CCCCEEEEEEc
Confidence 45555 4567777888899999999999999999987 456666653 2 23579999999
Q ss_pred CCCCCHHhHHhhh-hcccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCce
Q 004874 299 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (726)
Q Consensus 299 G~GMt~eeL~~~l-~FG~S~K--------~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~ 369 (726)
|+||++++|.+.| .+++|.+ ...+...||+||+||+++++ +++++.|.|++.+. .++.|.. ++.+.
T Consensus 81 G~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~-~~~~v~v~S~~~~~--~~~~~~~--~~~~~ 155 (220)
T 2wer_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGGS 155 (220)
T ss_dssp SCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSSSE
T ss_pred CCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh-cCCeeEEEEecCCC--ceeEEEe--CCCCc
Confidence 9999999998876 4666542 12467899999999998876 99999999999874 3778876 44456
Q ss_pred EEecCcc---CCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHH
Q 004874 370 LEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 370 i~VPi~~---~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e 416 (726)
+.+.... ...+||+|+++++.+. ++++...++. |.+|+.|.++||..
T Consensus 156 ~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~ 207 (220)
T 2wer_A 156 FTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (220)
T ss_dssp EEEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEE
T ss_pred eEeecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEE
Confidence 6554332 3468999999998764 6677777766 89999999999863
No 9
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.1e-23 Score=236.98 Aligned_cols=172 Identities=22% Similarity=0.270 Sum_probs=136.8
Q ss_pred eeeecC-HHHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEEEe
Q 004874 235 NFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIID 297 (726)
Q Consensus 235 ~~~~v~-pk~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I~D 297 (726)
..|++. .+.|+.++.+.|++...||+|||+||+||++ ..+.|.|.. ++ +..+|+|.|
T Consensus 6 ~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~--d~----~~~~I~I~D 79 (677)
T 2cg9_A 6 FEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP--KP----EQKVLEIRD 79 (677)
T ss_dssp EECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE--EG----GGTEEEEEE
T ss_pred eehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE--eC----CCCEEEEEE
Confidence 347777 4677777888999999999999999999973 345566552 21 347999999
Q ss_pred CCCCCCHHhHHhhhh-cccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCc
Q 004874 298 DGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 368 (726)
Q Consensus 298 NG~GMt~eeL~~~l~-FG~S~K--------~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~ 368 (726)
||+||++++|.++|+ .++|.+ ...+...|||||+|||||+| ++++|+|.||+.+. .++.|.+ +|.+
T Consensus 80 nGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~~~~W~s--~g~~ 154 (677)
T 2cg9_A 80 SGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGG 154 (677)
T ss_dssp CSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSSS
T ss_pred CCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--ceEEEEE--cCCc
Confidence 999999999998875 555532 22467899999999999977 99999999999974 4889988 5666
Q ss_pred eEEecCc---cCCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHHH
Q 004874 369 NLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 369 ~i~VPi~---~~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e~ 417 (726)
.+.|... ....+||+|+|+++++. +|+..+.++. |++||.|+++||..+
T Consensus 155 ~~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~ 208 (677)
T 2cg9_A 155 SFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLV 208 (677)
T ss_dssp EEEEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEEC
T ss_pred eEEEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEe
Confidence 7766442 34468999999999865 7888888876 999999999999753
No 10
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.89 E-value=2.9e-23 Score=234.43 Aligned_cols=174 Identities=21% Similarity=0.279 Sum_probs=137.9
Q ss_pred ceeeecCHH-HHHHhhccccCCHHHHHHHHHHcccccC----------------CCccEEEEEEcccccCCCCcCEEEEE
Q 004874 234 KNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSII 296 (726)
Q Consensus 234 ~~~~~v~pk-~L~slstsh~~~pf~ALaELIDNA~DAg----------------At~V~I~I~~~~d~~~~~~~~~L~I~ 296 (726)
...|++..+ .|+.++.+.|+.+..||+|||+||+||+ ++.+.|.|.. + .+..+|+|.
T Consensus 6 ~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d----~~~~~I~I~ 79 (559)
T 1y4s_A 6 TRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--D----KDKRTLTIS 79 (559)
T ss_dssp EEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE--E----TTTTEEEEE
T ss_pred ceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE--e----CCCcEEEEE
Confidence 345778874 6677788899999999999999999998 5556666652 2 234799999
Q ss_pred eCCCCCCHHhHHhhhh-cccCCCC----------CCCCCccccccceeeeecccccCeEEEEEeeCCC-cceEEEEeeec
Q 004874 297 DDGHGMTHQDVVRMTY-FGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLN 364 (726)
Q Consensus 297 DNG~GMt~eeL~~~l~-FG~S~K~----------~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~-~si~~ls~Sf~ 364 (726)
|||+||++++|.++|+ +++|.+. ..+...||+||+||+|++| +|++|+|.||+.+. ...++.|.+
T Consensus 80 DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s-- 156 (559)
T 1y4s_A 80 DNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES-- 156 (559)
T ss_dssp ECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEE--
T ss_pred ECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEE--
Confidence 9999999999998875 6666532 1367899999999999888 99999999999874 457899987
Q ss_pred CCCceEEecCccCCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHH
Q 004874 365 QGKDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 365 eG~~~i~VPi~~~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e 416 (726)
+|.+.+.+...+...+||+|+|+++++. +|+..+.++. |++||.|+++||..
T Consensus 157 ~g~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~ 210 (559)
T 1y4s_A 157 AGEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEI 210 (559)
T ss_dssp CSSSEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEE
T ss_pred eCCCeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEE
Confidence 5666676654444579999999999864 7887888876 99999999998753
No 11
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.88 E-value=2.7e-23 Score=215.51 Aligned_cols=169 Identities=23% Similarity=0.290 Sum_probs=132.7
Q ss_pred eec-CHHHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEEEeCC
Q 004874 237 VRA-DPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (726)
Q Consensus 237 ~~v-~pk~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I~DNG 299 (726)
|++ -.+.+..++.+.|+.+..||+|||+||+||+| +.+.|.|.. + .+...|+|.|||
T Consensus 50 F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~--d----~~~~~I~I~DnG 123 (264)
T 1yc1_A 50 FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP--N----KQDRTLTIVDTG 123 (264)
T ss_dssp CCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE--E----TTTTEEEEEECS
T ss_pred ehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE--C----CCeeEEEEEECC
Confidence 444 23567777888999999999999999999987 788888763 2 246799999999
Q ss_pred CCCCHHhHHhhhh-cccCCCC--------CCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceE
Q 004874 300 HGMTHQDVVRMTY-FGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (726)
Q Consensus 300 ~GMt~eeL~~~l~-FG~S~K~--------~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i 370 (726)
+||++++|..+|. ++.|.+. ..+...||+||+||||+++ ++++|+|.||+.+. .++.|.. .+.+.+
T Consensus 124 ~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~--~~~~~~ 198 (264)
T 1yc1_A 124 IGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAGGSF 198 (264)
T ss_dssp CCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEE--CSTTEE
T ss_pred cCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEE--cCCceE
Confidence 9999999988764 6666432 2367899999999999888 99999999999874 4688877 344456
Q ss_pred EecCcc--CCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHH
Q 004874 371 EIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 371 ~VPi~~--~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e 416 (726)
.+.... ...+||+|+|+|+.+. +++....++. |.+||.|+++||..
T Consensus 199 ~i~~~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~ 248 (264)
T 1yc1_A 199 TVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 248 (264)
T ss_dssp EEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEE
T ss_pred EEeecCCCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEE
Confidence 554321 2468999999998764 6677777765 99999999999863
No 12
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.87 E-value=5.1e-23 Score=234.92 Aligned_cols=171 Identities=22% Similarity=0.288 Sum_probs=130.8
Q ss_pred eeecCH-HHHHHhhccccCCHHHHHHHHHHcccccC----------------CCccEEEEEEcccccCCCCcCEEEEEeC
Q 004874 236 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDD 298 (726)
Q Consensus 236 ~~~v~p-k~L~slstsh~~~pf~ALaELIDNA~DAg----------------At~V~I~I~~~~d~~~~~~~~~L~I~DN 298 (726)
.|++.. +.|+.++.+.|+.+..||+|||+||+||+ ++.+.|.|.. + .+..+|+|.||
T Consensus 8 ~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~--d----~~~~~I~I~Dn 81 (624)
T 2ioq_A 8 GFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--D----KDKRTLTISDN 81 (624)
T ss_dssp -------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE--E----TTTTEEEEEEC
T ss_pred eeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE--e----CCCcEEEEEEC
Confidence 466665 46777788888999999999999999998 5556666652 2 23579999999
Q ss_pred CCCCCHHhHHhhhh-cccCCCC----------CCCCCccccccceeeeecccccCeEEEEEeeCCC-cceEEEEeeecCC
Q 004874 299 GHGMTHQDVVRMTY-FGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQG 366 (726)
Q Consensus 299 G~GMt~eeL~~~l~-FG~S~K~----------~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~-~si~~ls~Sf~eG 366 (726)
|+||+++++.++|+ +++|.+. ..+...||+||+||+|++| +|++|+|.||+.+. ...++.|.+ +|
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s--~g 158 (624)
T 2ioq_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--AG 158 (624)
T ss_dssp SCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEE--CS
T ss_pred CCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEE--eC
Confidence 99999999988875 6666431 1367899999999999888 99999999999873 457899987 55
Q ss_pred CceEEecCccCCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHH
Q 004874 367 KDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (726)
Q Consensus 367 ~~~i~VPi~~~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~ 415 (726)
.+.+.+...+...+||+|+|+++++. +|+..+.++. |++||.|+++||.
T Consensus 159 ~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~ 209 (624)
T 2ioq_A 159 EGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (624)
T ss_dssp SSCCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred CCeEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 55665543344579999999999864 7887888876 9999999999875
No 13
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.86 E-value=8.9e-23 Score=233.99 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=116.9
Q ss_pred eecCH-HHHHHhhccccCCHHHHHHHHHHcccccC----------------CCccEEEEEEcccccCCCCcCEEEEEeCC
Q 004874 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (726)
Q Consensus 237 ~~v~p-k~L~slstsh~~~pf~ALaELIDNA~DAg----------------At~V~I~I~~~~d~~~~~~~~~L~I~DNG 299 (726)
|++.- +.|+.++.+.|+.+..||+|||+||+||+ ++.+.|.|.. + .+..+|+|.|||
T Consensus 27 Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~--d----~~~~~I~I~DnG 100 (666)
T 2o1u_A 27 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--D----KEKNLLHVTDTG 100 (666)
T ss_dssp -------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE--E----TTTTEEEEEECS
T ss_pred hHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE--e----CCCCEEEEEECC
Confidence 55543 44566678888999999999999999997 5556777653 2 235799999999
Q ss_pred CCCCHHhHHhhhh-cccCCCC--------C-----CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecC
Q 004874 300 HGMTHQDVVRMTY-FGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 365 (726)
Q Consensus 300 ~GMt~eeL~~~l~-FG~S~K~--------~-----~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~e 365 (726)
+||++++|.++|+ ++.|.+. . .+...||+||+||||++| +|++|+|.||+.+. .++.|.+ +
T Consensus 101 iGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~~--~~~~W~s--~ 175 (666)
T 2o1u_A 101 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 175 (666)
T ss_dssp CCCCHHHHHHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTTS--CCEEEEE--S
T ss_pred CCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCCC--ceEEEEE--e
Confidence 9999999998875 5555321 1 366799999999999977 99999999999875 4788887 5
Q ss_pred CCceEEecCcc---CCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHH
Q 004874 366 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (726)
Q Consensus 366 G~~~i~VPi~~---~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~ 415 (726)
| +.+.|.... ...+||+|+|+++++. +|+..+.++. |++||.|+++||.
T Consensus 176 g-g~~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~ 229 (666)
T 2o1u_A 176 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 229 (666)
T ss_dssp S-SCCEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEE
T ss_pred C-CeEEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceE
Confidence 5 666664332 2468999999999865 7777888866 9999999999875
No 14
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.86 E-value=2.1e-22 Score=205.09 Aligned_cols=170 Identities=22% Similarity=0.313 Sum_probs=129.6
Q ss_pred eecC-HHHHHHhhccccCCHHHHHHHHHHcccccC----------------CCccEEEEEEcccccCCCCcCEEEEEeCC
Q 004874 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (726)
Q Consensus 237 ~~v~-pk~L~slstsh~~~pf~ALaELIDNA~DAg----------------At~V~I~I~~~~d~~~~~~~~~L~I~DNG 299 (726)
|++. ...+..++.+.|+.+..||+|||+||+||+ ++.+.|.|.. + .+...|+|.|||
T Consensus 29 f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~--~----~~~~~i~I~DnG 102 (235)
T 2ior_A 29 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--D----KDKRTLTISDNG 102 (235)
T ss_dssp CCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE--E----TTTTEEEEEECS
T ss_pred eehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE--c----CCceEEEEEECC
Confidence 4444 345666677888889999999999999998 5556666652 1 234689999999
Q ss_pred CCCCHHhHHhhh-hcccCCCC----------CCCCCccccccceeeeecccccCeEEEEEeeCCCc-ceEEEEeeecCCC
Q 004874 300 HGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGK 367 (726)
Q Consensus 300 ~GMt~eeL~~~l-~FG~S~K~----------~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~-si~~ls~Sf~eG~ 367 (726)
+||++++|...+ .+++|.+. ..+...||+||+||+++++ ++++++|.||+.+.. ..++.|.. ++.
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~-~~~~v~V~Sr~~~~~~~~~~~w~~--~~~ 179 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--AGE 179 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG-TEEEEEEEEECTTSCGGGEEEEEE--CSS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh-CcCeEEEEEecCCCCCceeEEEEe--cCC
Confidence 999999998876 47766431 0235789999999998855 999999999998753 46888887 444
Q ss_pred ceEEecCccCCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHH
Q 004874 368 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (726)
Q Consensus 368 ~~i~VPi~~~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~ 415 (726)
..+.+...+...+||+|+++++++. +|.....++. |.+|+.|..+||.
T Consensus 180 ~~~~i~~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~ 229 (235)
T 2ior_A 180 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 229 (235)
T ss_dssp SEEEEEEECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEE
T ss_pred CcEEEeeCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeE
Confidence 5565543334568999999999764 6666677755 9999999999876
No 15
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.65 E-value=7.1e-17 Score=136.36 Aligned_cols=54 Identities=33% Similarity=0.699 Sum_probs=48.3
Q ss_pred CCCCCCCceecCc--cchhhccCCCCCCCCCCCCCceecCCCC--CCCCCCCcccccC
Q 004874 610 ALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWFCYMKPF--EGLCDLPEQKVDA 663 (726)
Q Consensus 610 ~~~~~~~~WVQCD--~ClKWR~LP~~~~~~~lp~~W~C~mNp~--~~sC~~pEe~~~~ 663 (726)
.......+||||| .|+|||+||.++++..+|++|||+|||+ +++|++|||.++.
T Consensus 10 ~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 10 SGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp SSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 3455678999999 9999999999999888999999999996 6999999998863
No 16
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.56 E-value=2.5e-16 Score=141.53 Aligned_cols=58 Identities=19% Similarity=0.540 Sum_probs=49.5
Q ss_pred cCCCCCCCceecCccchhhccCCCCCC-CCCCCCCceecCCCC--CCCCCCCcccccCCce
Q 004874 609 GALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWFCYMKPF--EGLCDLPEQKVDAGVV 666 (726)
Q Consensus 609 ~~~~~~~~~WVQCD~ClKWR~LP~~~~-~~~lp~~W~C~mNp~--~~sC~~pEe~~~~~~~ 666 (726)
...+.+..+|||||.|+|||+||.++. ...+|++|||+|||+ +++|++|||.++..+.
T Consensus 19 ~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~ei~ 79 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEIN 79 (100)
T ss_dssp SSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHHHH
T ss_pred CCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHHHH
Confidence 344667889999999999999998765 356899999999996 6999999999887654
No 17
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.50 E-value=6.1e-14 Score=149.27 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=103.1
Q ss_pred ceeeecCHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh
Q 004874 234 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 234 ~~~~~v~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
|.+..+++...+.+ |...+.++..+|+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++...+.
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 75 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALALA 75 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHHS
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhhh
Confidence 44678999999988 455667999999999999999999999998872 2347999999999999999999875
Q ss_pred -cccCCCCCC-----CCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCc-eEEecCccCCCCCcEEE
Q 004874 313 -FGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD-NLEIPIVSYYRKGQFME 385 (726)
Q Consensus 313 -FG~S~K~~~-----d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~-~i~VPi~~~e~~GT~I~ 385 (726)
|+.+ |... ....+|.+|+|+.+.++ ++ +++|.||+.+.. .++.+ +.+|.. .+.+. +....+||.|+
T Consensus 76 ~~~ts-K~~~~~d~~~~~~~G~~G~gl~si~~-vs-~l~v~s~~~~~~-~~~~~--~~~g~~~~~~~~-~~~~~~GT~V~ 148 (333)
T 1b63_A 76 RHATS-KIASLDDLEAIISLGFRGEALASISS-VS-RLTLTSRTAEQQ-EAWQA--YAEGRDMNVTVK-PAAHPVGTTLE 148 (333)
T ss_dssp TTCCS-SCCSHHHHHTCCSSCCSSCHHHHHHT-TS-EEEEEEECTTCS-SEEEE--EEETTTTEEEEE-EECCCSEEEEE
T ss_pred ccccc-CccccchhhhccccCccccchhhhhc-CC-cEEEEEecCCCc-eEEEE--EEcCCcceEeee-cccCCCCCEEE
Confidence 5544 3211 23578999999976544 66 899999998742 34444 334433 22221 12346899998
Q ss_pred EE
Q 004874 386 LD 387 (726)
Q Consensus 386 l~ 387 (726)
+.
T Consensus 149 v~ 150 (333)
T 1b63_A 149 VL 150 (333)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 18
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.2e-14 Score=150.60 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=94.4
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcc
Q 004874 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (726)
Q Consensus 236 ~~~v~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG 314 (726)
+-.+++..++.+ |...+..+..+|.|||+||+||+|+.|.|.+. ..+...|+|.|||.||+++++..++.-.
T Consensus 6 I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp -------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceecc
Confidence 457888888888 56666899999999999999999999998885 2346799999999999999998876522
Q ss_pred cCCC--CCCCC---CccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCccCCCCCcEEEEE
Q 004874 315 HKQP--DADDP---NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (726)
Q Consensus 315 ~S~K--~~~d~---~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~~e~~GT~I~l~ 387 (726)
.+.| ...|. ...|..|.|+.|.+. ++ +++|.||+.+ ..++.|.. ++.+.+..+.+....+||+|++.
T Consensus 79 ~tsK~~~~~Dl~~i~t~GfrGeaL~Si~a-vS-~l~V~sr~~~--~~~~~~~~--~~~G~~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 79 YTSKIAKFQDVAKVQTLGFRGEALSSLCG-IA-KLSVITTTSP--PKADKLEY--DMVGHITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp EC---------CCCCEEEETTHHHHHHHH-SS-EEEEEEESST--TCEEEEEE--CTTCCEEEEEEECCSSEEEEEEE
T ss_pred ccCcCCchhhhhhhhccCccchHHHHhhc-cC-EEEEEEEECC--CCEEEEEE--cCCCcEEeeccccCCCCeEEEEc
Confidence 2223 22233 456888999976555 77 6999999987 45666654 22233333223345689999884
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.41 E-value=2.9e-13 Score=146.13 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=88.8
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-c
Q 004874 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (726)
Q Consensus 236 ~~~v~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-F 313 (726)
...+++...+.+ +...+..+..+|+|||+||+||+++.|.|.+.. .+...|+|.|||.||+++++..++. |
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~~ 87 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLKH 87 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC--
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhhc
Confidence 566888888888 455667999999999999999999999988862 2356999999999999999998875 4
Q ss_pred ccCCCC-CCCC---CccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCccCCCCCcEEEEE
Q 004874 314 GHKQPD-ADDP---NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (726)
Q Consensus 314 G~S~K~-~~d~---~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~~~e~~GT~I~l~ 387 (726)
.++... ..|. ...|.+|+|+.+.++ ++ +++|.||+.+. ..++.|.. ++.+.+..+.+....+||+|++.
T Consensus 88 ~tsK~~~~~dl~~i~s~G~rG~gl~si~~-vs-~v~v~t~~~~~-~~~~~~~~--~~~G~~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 88 HTSKIQEFADLTQVETFGFRGEALSSLCA-LS-DVTISTCHASA-KVGTRLMF--DHNGKIIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp --------CCTTCSEEESSSSSHHHHHHH-HS-EEEEEEECTTC-SSCEEEEE--CTTSCEEEEEECCCCSEEEEEEE
T ss_pred cccccccccchhcccccCCCCchhhhhhh-hc-cEEEEEccCCC-cceEEEEE--cCCCceEeecccCCCCCcEEEEe
Confidence 443211 1232 347999999976655 77 99999998774 33555543 22223333223334689999985
No 20
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.31 E-value=2.2e-12 Score=138.55 Aligned_cols=139 Identities=19% Similarity=0.286 Sum_probs=97.7
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcc
Q 004874 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (726)
Q Consensus 236 ~~~v~pk~L~sl-stsh~~~pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG 314 (726)
+-.+++..++.+ |...+..+..+|.|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++.-.
T Consensus 9 I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~-------~~~~~I~V~DnG~GI~~~~l~~~~~~~ 81 (348)
T 3na3_A 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE-------GGLKLIQIQDNGTGIRKEDLDIVCERF 81 (348)
T ss_dssp CCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGGGTTTSTT
T ss_pred cccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEe-------CCEEEEEEEECCcCcChHHhhhhhccc
Confidence 467899999999 566668999999999999999999999998862 235689999999999999999887633
Q ss_pred cCCCC--CCC---CCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecC-ccCCCCCcEEEEE
Q 004874 315 HKQPD--ADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELD 387 (726)
Q Consensus 315 ~S~K~--~~d---~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi-~~~e~~GT~I~l~ 387 (726)
.+.|. ..| ....|.+|.|+.|.+. ++ +++|.||+.+.. .++.+.- ..| .+..+. +....+||.|++.
T Consensus 82 ~tsK~~~~~dl~~i~s~GfrGeaL~Si~a-vs-~l~v~sr~~~~~-~~~~~~~-~~G--~~~~~~~~~~~~~GTtV~v~ 154 (348)
T 3na3_A 82 TTSKLQSFEDLASISTYGFRGEALASISH-VA-HVTITTKTADGK-CAYRASY-SDG--KLKAPPKPCAGNQGTQITVE 154 (348)
T ss_dssp CCSSCCCC---------CCTTCHHHHHHH-SS-EEEEEEECTTCS-SEEEEEE-ETT--EESSCCEEECCCSEEEEEEE
T ss_pred cccccCcchhhhccccCCcCChHHHHhhc-cc-EEEEEEEECCCC-ceEEEEE-eCC--EEeeeeeEecCCCCcEEEEC
Confidence 33332 122 3567999999965544 77 899999998753 3444432 222 111111 1124689999884
No 21
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.85 E-value=4.9e-09 Score=104.62 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=70.5
Q ss_pred HHHHHHHHHHccccc---C-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhH--------Hhhhh-cccCCCCCC
Q 004874 255 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDAD 321 (726)
Q Consensus 255 pf~ALaELIDNA~DA---g-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-FG~S~K~~~ 321 (726)
+..+|.|||+||+|| + |+.|.|.|.. ...|+|.|||.||+.+++ ...+. ...++|-..
T Consensus 18 ~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---------~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~ 88 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 88 (201)
T ss_dssp THHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---------CCEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCC
Confidence 468899999999999 5 9999988761 238999999999999884 23232 222223211
Q ss_pred --CCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecC-ccC--CCCCcEEEEEec
Q 004874 322 --DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDTV 389 (726)
Q Consensus 322 --d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi-~~~--e~~GT~I~l~lk 389 (726)
.....|..|+|+.+... |++.++|.|++.+. ...+.|..|.-...++. ... ...||+|++.+.
T Consensus 89 ~~~~~s~GfrGeglssina-lS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd 156 (201)
T 3fv5_A 89 KNYQFSGGLHGVGISVVNA-LSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 156 (201)
T ss_dssp -------------CHHHHH-TEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEEC
T ss_pred CcccccCcccceecchhhc-ccceEEEEEEecCc----eEEEEEeCCEEcccceecccCCCCCCCeEEEEEEC
Confidence 12468999999965544 88899999998763 23445544432222221 122 468999988653
No 22
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.55 E-value=1.6e-07 Score=95.06 Aligned_cols=122 Identities=17% Similarity=0.171 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHccccc----CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhH--------Hhhhh-cccCCCCC
Q 004874 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA 320 (726)
Q Consensus 254 ~pf~ALaELIDNA~DA----gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-FG~S~K~~ 320 (726)
-+...+.|||+||+|+ .++.|.|.|.. ...|+|.|||.||+.+.. +-.|. +..+.|-.
T Consensus 35 gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd 105 (220)
T 4duh_A 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcccccccccCcchhhheeeecccCCCcC
Confidence 4778999999999999 89999998861 247999999999999863 22232 22222321
Q ss_pred --CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCc--eEEecCccCCCCCcEEEEEecC
Q 004874 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLEIPIVSYYRKGQFMELDTVV 390 (726)
Q Consensus 321 --~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~--~i~VPi~~~e~~GT~I~l~lk~ 390 (726)
.-...-|..|+|.++.. .|+..++|.+++.+. ...+.|..|.- ... ++......||+|+..+..
T Consensus 106 ~~~yk~SgGlhGvG~svvN-AlS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~-~~g~~~~~GT~V~F~Pd~ 173 (220)
T 4duh_A 106 DNSYKVSGGLHGVGVSVVN-ALSQKLELVIQREGK----IHRQIYEHGVPQAPLA-VTGETEKTGTMVRFWPSL 173 (220)
T ss_dssp TTC--------CCCHHHHH-HTEEEEEEEEEETTE----EEEEEEETTEESSSCE-EEEECSCCEEEEEEEECT
T ss_pred CCccccccCccceecchhc-ccccceEEEEEECCE----EEEEEecCCcCcCCce-eccccCCCCcEEEEEECH
Confidence 12357789999995544 488999999998773 23445544421 111 111235689999876543
No 23
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.53 E-value=2e-07 Score=103.73 Aligned_cols=133 Identities=18% Similarity=0.259 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccc
Q 004874 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt-----~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IG 327 (726)
.+..+|.|||+||+||.+. .|.|.+... + ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~-~--~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLI-D--DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEE-E--TTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEC-C--CcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 4678999999999999876 677777631 0 012456899999999999999999876 4344332 1234568
Q ss_pred cccceeeeecc---cccCe-EEEEEeeCCCcceEEEEeeec-CC-CceE-Ee-cCcc-CCCCCcEEEEEecC
Q 004874 328 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSLN-QG-KDNL-EI-PIVS-YYRKGQFMELDTVV 390 (726)
Q Consensus 328 qFGvGFKSA~m---rLG~~-V~V~TK~~g~~si~~ls~Sf~-eG-~~~i-~V-Pi~~-~e~~GT~I~l~lk~ 390 (726)
..|+|+..+.. ..|.. +.|.|+..+......+...+. .. .... .. |... ...+||.|.+.+..
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~ 179 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPG 179 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEEC
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcC
Confidence 89999976533 23455 999998766431222222221 11 1111 11 1111 23589999988754
No 24
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.51 E-value=1.7e-07 Score=102.08 Aligned_cols=120 Identities=19% Similarity=0.207 Sum_probs=79.7
Q ss_pred HHHHHHHHHccccc---C-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh--------HHhhhh-cccCCCCC--
Q 004874 256 FGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA-- 320 (726)
Q Consensus 256 f~ALaELIDNA~DA---g-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-FG~S~K~~-- 320 (726)
...|.|||+||+|| + ++.|.|.|.. ...|+|.|||.||+.++ ++..|. +..+.|-.
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~ 103 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEec---------CCEEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCC
Confidence 46899999999999 4 8999998861 13899999999999988 455554 33333321
Q ss_pred CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEec-CccCC--CCCcEEEEEec
Q 004874 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYY--RKGQFMELDTV 389 (726)
Q Consensus 321 ~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VP-i~~~e--~~GT~I~l~lk 389 (726)
.-...-|..|+|+.+... |+..++|.|++.+. ...+.|..|.-.-.+. +.... .+||+|++.+.
T Consensus 104 ~~~~sgGl~GvGls~vna-lS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd 170 (390)
T 1s16_A 104 NYQFSGGLHGVGISVVNA-LSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 170 (390)
T ss_dssp SCSSCSCCSSCHHHHHHH-TEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEEC
T ss_pred cccccCCccccchHHHHH-hhcccEEEEEECCc----EEEEEEeCCcccccceecccccCCCCceEEEEEEC
Confidence 123467899999965444 88899999997652 2334554442111121 22333 68999987643
No 25
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.50 E-value=4.1e-07 Score=99.17 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHccccc---C-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhH--------Hhhhh-cccCCCCC
Q 004874 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA 320 (726)
Q Consensus 254 ~pf~ALaELIDNA~DA---g-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-FG~S~K~~ 320 (726)
.+...|.|||+||+|| + ++.|.|.|.. ...|+|.|||.||+.++. +-.|. +..+.|-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---------CCEEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 4788999999999999 5 8999998861 138999999999999873 33444 33333321
Q ss_pred --CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCC--ceEEecCccCCCCCcEEEEEec
Q 004874 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK--DNLEIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 321 --~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~--~~i~VPi~~~e~~GT~I~l~lk 389 (726)
.-...-|..|+|..+... |+..++|.|++.+. ...+.|..|. ....+- .+...+||+|++.+.
T Consensus 105 ~~~~~vSgGl~GvGls~vna-lS~~l~v~~~r~g~----~~~~~~~~G~~~~~l~~~-~~~~~~GT~V~f~Pd 171 (391)
T 1ei1_A 105 DNSYKVSGGLHGVGVSVVNA-LSQKLELVIQREGK----IHRQIYEHGVPQAPLAVT-GETEKTGTMVRFWPS 171 (391)
T ss_dssp SSSCSSCSCCSSCHHHHHHH-TEEEEEEEEEETTE----EEEEEEETTEESSCCEEE-EECSCCEEEEEEEEC
T ss_pred CCcccccCCccccchHHHHH-hcCeEEEEEEeCCc----EEEEEEcCCcccccceec-cCcCCCccEEEEEEC
Confidence 123467899999965444 88899999987662 2334454442 111110 112468999988654
No 26
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.48 E-value=3.8e-07 Score=92.83 Aligned_cols=141 Identities=19% Similarity=0.189 Sum_probs=84.8
Q ss_pred CceeeecCHHH-HHHhhccccCCHHHHHHHHHHccccc----CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh-
Q 004874 233 EKNFVRADPSY-LQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD- 306 (726)
Q Consensus 233 ~~~~~~v~pk~-L~slstsh~~~pf~ALaELIDNA~DA----gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee- 306 (726)
+..+++..|.. +-+.+ . .-+...+.|||+||+|+ .++.|.|.|.. ...|+|.|||.||+.++
T Consensus 21 ~le~vr~RPgmYiGs~~--~-~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~GIp~~~h 88 (226)
T 4emv_A 21 GLDAVRKRPGMYIGSTD--G-AGLHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRGMPTGMH 88 (226)
T ss_dssp CTHHHHHCHHHHHSCSS--H-HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBC
T ss_pred hhHHHhhCCceEEcCCC--c-ccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCCcccccc
Confidence 45556666653 22221 1 24678899999999999 78888888761 24899999999999987
Q ss_pred ------HHhhhh-cccCCCCC--CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCC-Cc--eEE-ec
Q 004874 307 ------VVRMTY-FGHKQPDA--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KD--NLE-IP 373 (726)
Q Consensus 307 ------L~~~l~-FG~S~K~~--~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG-~~--~i~-VP 373 (726)
++-.|. +..+.|-. .-...-|..|+|..+.. .|+..++|.+++.+. ...+.|..| .- ... +.
T Consensus 89 ~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvN-ALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~~l~~ig 163 (226)
T 4emv_A 89 AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN-ALSSWLEVEITRDGA----VYKQRFENGGKPVTTLKKIG 163 (226)
T ss_dssp GGGCBHHHHHHHCBC--------------CGGGCCHHHHH-HTEEEEEEEEEETTE----EEEEEEETTTEESSCSEEEE
T ss_pred ccCceehheeEEeecccCccCccceEeccccccccchhhh-hcccceEEEEEeCCc----EEEEEECCCCEEcCCceEec
Confidence 444443 22222311 12457799999995544 488999999998773 234455444 21 111 11
Q ss_pred CccCCCCCcEEEEEecC
Q 004874 374 IVSYYRKGQFMELDTVV 390 (726)
Q Consensus 374 i~~~e~~GT~I~l~lk~ 390 (726)
.......||+|++.+..
T Consensus 164 ~~~~~~~GT~V~F~PD~ 180 (226)
T 4emv_A 164 TALKSKTGTKVTFMPDA 180 (226)
T ss_dssp ECCTTCCEEEEEEEECT
T ss_pred ccCCCCCCeEEEEEECH
Confidence 11115689999876543
No 27
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.45 E-value=3.7e-07 Score=103.10 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccc
Q 004874 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt-----~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IG 327 (726)
.+..+|.|||+||+||.+. .|.|.+... + ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~-~--~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLI-D--DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEE-E--TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEEC-C--CcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 4678999999999999876 788887631 0 012456899999999999999998876 4344332 1235678
Q ss_pred cccceeeeecc---cccCe-EEEEEeeCCCcceEEEEeeec-CCCceEEe---cCccC-CCCCcEEEEEecC
Q 004874 328 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSLN-QGKDNLEI---PIVSY-YRKGQFMELDTVV 390 (726)
Q Consensus 328 qFGvGFKSA~m---rLG~~-V~V~TK~~g~~si~~ls~Sf~-eG~~~i~V---Pi~~~-e~~GT~I~l~lk~ 390 (726)
..|+|+..+.. ..|.. +.|.|+..+......+...+. ...+.... |...+ ..+||.|.+.+..
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~ 178 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPG 178 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEEEEC
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEEecc
Confidence 89999975532 23455 999998765431222222221 11111111 11122 3579999988754
No 28
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.35 E-value=2.7e-07 Score=100.45 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHcccccC----CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--------hhh-cccCCCCC
Q 004874 254 WIFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA 320 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAg----At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-FG~S~K~~ 320 (726)
.+...|.|||+||+|+. ++.|.|.+.. ...|+|.|||.||+.+++.+ ++. |....+..
T Consensus 32 g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---------~~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~ 102 (390)
T 1kij_A 32 GYHHLFKEILDNAVDEALAGYATEILVRLNE---------DGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFE 102 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGG
T ss_pred hHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---------CCEEEEEEcCCCCCHHHhhhccccchhhheeeeeeccccc
Confidence 45688999999999995 7888887751 14899999999999998765 443 22222210
Q ss_pred --CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEe-cCccC--CCCCcEEEEEe
Q 004874 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI-PIVSY--YRKGQFMELDT 388 (726)
Q Consensus 321 --~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~V-Pi~~~--e~~GT~I~l~l 388 (726)
......|..|+|++++.. +++.+.|.|++.+. ...+.|..|.-...+ ++.+. ..+||+|++.+
T Consensus 103 ~~~~~~s~G~~G~Gls~v~a-ls~~~~v~t~~~g~----~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~P 170 (390)
T 1kij_A 103 QGAYKVSGGLHGVGASVVNA-LSEWTVVEVFREGK----HHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKP 170 (390)
T ss_dssp GSSCCCCSCSSTTSHHHHHH-TEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEE
T ss_pred CccccccCCCCCcceeeecc-cccceEEEEecCCc----EEEEEEcCCcccccceeeccccCCCCCcEEEEEE
Confidence 112356899999966554 88999999997652 223344444211112 12222 46899998864
No 29
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.32 E-value=4.3e-07 Score=98.32 Aligned_cols=118 Identities=8% Similarity=0.029 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHccccc----CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCC--Cccc
Q 004874 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP--NRIG 327 (726)
Q Consensus 254 ~pf~ALaELIDNA~DA----gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~--~~IG 327 (726)
-+...+.|||+||+|| +++.|.|.|.. + ..|+|.|||.||+. |+.-.+- .+.|-.... ...+
T Consensus 30 gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~-------~--g~I~V~DnGrGIp~-e~v~~lh--agsKf~~~~~~~~y~ 97 (369)
T 3cwv_A 30 GLHHLVYFLLDVAYEEARRGECRDVVLEVGG-------D--GSIALFCTSRTVTA-ENLVRVA--TGAGFLGRPPGDGWG 97 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEEEESSCCH-HHHHHHH--TTTTGGGSSCCCSTT
T ss_pred hHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC-------C--CEEEEEECCCCcCH-hHeeeee--cCCCcCCCccccccc
Confidence 5778999999999998 79999998871 1 38999999999999 4332222 222211100 1222
Q ss_pred cccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCce----EEec---CccCCCCCcEEEEEec
Q 004874 328 RFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN----LEIP---IVSYYRKGQFMELDTV 389 (726)
Q Consensus 328 qFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~----i~VP---i~~~e~~GT~I~l~lk 389 (726)
.-| |..+ .-.|+..++|.|++.+. ...+.|..|.-. -.-| +......||+|++.+.
T Consensus 98 vsG-Gls~-vnalSs~l~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~Pd 160 (369)
T 3cwv_A 98 WDS-MLVV-SLALSSRYQVDIWADGR----QWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFVPD 160 (369)
T ss_dssp TTS-SHHH-HHHTEEEEEEEEEETTE----EEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEEEC
T ss_pred ccC-HHHH-HHHhhceEEEEEEECCC----EEEEEEeCCcccccccccCCceEecccCCCCCEEEEEEC
Confidence 225 7633 33478899999998763 123344444210 0112 2222467999988754
No 30
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.24 E-value=1.5e-06 Score=95.16 Aligned_cols=126 Identities=13% Similarity=0.178 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHcccccC-----CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh--------HHhhhh-cccCCCC
Q 004874 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD 319 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAg-----At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-FG~S~K~ 319 (726)
-+...+.||||||+||. ++.|.|.|.. +...|+|.|||.||+.++ ++-.|. +..+.|-
T Consensus 52 GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~--------~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf 123 (400)
T 1zxm_A 52 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDP--------ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNY 123 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC--------CCCEEEEEECCCcccCccccccCccchhheeeeecccCCC
Confidence 46788999999999997 7888888872 126999999999999886 333443 2222231
Q ss_pred C--CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEec-CccC-CCCCcEEEEEecC
Q 004874 320 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSY-YRKGQFMELDTVV 390 (726)
Q Consensus 320 ~--~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VP-i~~~-e~~GT~I~l~lk~ 390 (726)
. .-.-.-|..|+|..+.. .|+..++|.++...... ...+.|..|......+ +.+. ...||+|++.+..
T Consensus 124 ~~~~ykvSgGlhGvGlsvVn-AlS~~l~v~v~~~~~g~--~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~Pd~ 195 (400)
T 1zxm_A 124 DDDEKKVTGGRNGYGAKLCN-IFSTKFTVETASREYKK--MFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDL 195 (400)
T ss_dssp CGGGCCCCSCCSSCHHHHHH-HTEEEEEEEEEETTTTE--EEEEEEETTTTEECCCEEEECCSCCEEEEEEEECG
T ss_pred CCCcccccCCccccceeeeE-EeccceEEEEecCCCCc--EEEEEEccCccccCcceeccCCCCCccEEEEEECh
Confidence 1 11246799999995544 48899999998743221 2233444442222111 1122 3479999877543
No 31
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.21 E-value=1.1e-06 Score=101.02 Aligned_cols=131 Identities=16% Similarity=0.250 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHcccccCCC-----ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh-cccCCCCCCCCCccc
Q 004874 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgAt-----~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-FG~S~K~~~d~~~IG 327 (726)
.+..+|.|||+||+||.++ .|.|.+.. + +.+...|+|.|||.||+.+++.+++. |..+.+........|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~--~---~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVER--T---GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEE--E---TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEE--C---CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 4668899999999999875 66666652 1 11345899999999999999999875 323322111223458
Q ss_pred cccceeeeecc---cccCe-EEEEEeeCCCcceEEEEeee--cCCCceE--EecCccCCCCCcEEEEEec
Q 004874 328 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSL--NQGKDNL--EIPIVSYYRKGQFMELDTV 389 (726)
Q Consensus 328 qFGvGFKSA~m---rLG~~-V~V~TK~~g~~si~~ls~Sf--~eG~~~i--~VPi~~~e~~GT~I~l~lk 389 (726)
..|+|+..+.. .++.. +.|.|+..+......+...+ ..|.... .-+......+||.|++.++
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~f~ 181 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMR 181 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECS
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEEec
Confidence 89999975432 22333 78888876532222222222 1222221 1112222358999998865
No 32
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.09 E-value=2.2e-06 Score=94.07 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=69.1
Q ss_pred HHHHHHHHHccccc----CCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhH--------Hhhhh-cccCCCCC--
Q 004874 256 FGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA-- 320 (726)
Q Consensus 256 f~ALaELIDNA~DA----gAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-FG~S~K~~-- 320 (726)
...+.|+||||+|+ .++.|.|.|.. ...|+|.|||.||+.+.. +-.|. +....|-.
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~ 122 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNR 122 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC---------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCC
Confidence 57899999999999 78999888761 248999999999998763 22232 11122211
Q ss_pred CCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEec-CccC--CCCCcEEEEEec
Q 004874 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSY--YRKGQFMELDTV 389 (726)
Q Consensus 321 ~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VP-i~~~--e~~GT~I~l~lk 389 (726)
.-...-|..|+|.++.. .|+..+.|.+++.+. ...+.|..|.-.-.++ +.+. ...||+|+..+.
T Consensus 123 ~ykvSgGlhGvG~svVN-ALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD 189 (408)
T 3lnu_A 123 NYTFSGGLHGVGVSVVN-ALSTKVELFIKREGS----EHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWAD 189 (408)
T ss_dssp -----------CHHHHH-HTEEEEEEEEEETTE----EEEEEEETTEECSCCEEEEECCTTCCEEEEEEEEC
T ss_pred ceeecCCccccccceeh-hccCeEEEEEEECCE----EEEEEECCCEECCCceEeccCcCCCCCcEEEEEEC
Confidence 12356789999995444 489999999998773 2345554442111111 1122 368999987654
No 33
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.87 E-value=1.7e-05 Score=87.21 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHcccccC-----CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHh--------hhh-cccCCCC
Q 004874 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD 319 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAg-----At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-FG~S~K~ 319 (726)
-+.-.+.|+|+||+|+. ++.|.|.|.. +...|+|.|||.||+.+.... .|. +....|-
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~--------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKf 135 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNY 135 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC--------CCCEEEEEECCCcccCcccccCCcccceEEEEEEeccccc
Confidence 35568999999999985 6888888872 226899999999998775322 232 1122221
Q ss_pred C--CCCCccccccceeeeecccccCeEEEEEee-CCCcceEEEEeeecCCCceEEec-Ccc--CCCCCcEEEEEecC
Q 004874 320 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIP-IVS--YYRKGQFMELDTVV 390 (726)
Q Consensus 320 ~--~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~-~g~~si~~ls~Sf~eG~~~i~VP-i~~--~e~~GT~I~l~lk~ 390 (726)
. .-.-.-|..|+|.+ +.-.|+..+.|.++. .+. ..+.++|..|.....-| +.. ....||+|+..+..
T Consensus 136 d~~~ykvSGGLhGVG~S-vVNALS~~l~V~v~r~rdG---k~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD~ 208 (418)
T 1pvg_A 136 DDDEKKVTGGRNGYGAK-LCNIFSTEFILETADLNVG---QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDL 208 (418)
T ss_dssp CTTSCCCCSCCSSCHHH-HHHHTEEEEEEEEEETTTT---EEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECG
T ss_pred CCCceeccCCccceeee-eeeeccceEEEEEEECCCC---cEEEEEEEcCCCccCCCeecccCCCCCceEEEEEECh
Confidence 1 12345689999984 444588999999985 222 13445664442111111 111 23589998876543
No 34
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.86 E-value=4e-05 Score=76.33 Aligned_cols=110 Identities=19% Similarity=0.281 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHccccc---C-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccc
Q 004874 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (726)
Q Consensus 254 ~pf~ALaELIDNA~DA---g-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqF 329 (726)
-+...+.|||+||+|+ + ++.|.|.|.. ...|+|.|||.||+.+.-. ..+. .....| |
T Consensus 31 gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---------~g~i~V~DnG~Gip~~~h~-------~~~~-~~~e~i--~ 91 (198)
T 3ttz_A 31 GLHHLVWEIVDNSIDEALAGYANQIEVVIEK---------DNWIKVTDNGRGIPVDIQE-------KMGR-PAVEVI--L 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---------GGEEEEEECSSCCCCSBCT-------TTSS-BHHHHH--H
T ss_pred chHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---------CCeEEEEECCCCccccccC-------cCCC-cccccc--c
Confidence 4678899999999995 7 8999998872 1399999999999986210 0010 001111 2
Q ss_pred cceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEec-CccCCCCCcEEEEEec
Q 004874 330 GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELDTV 389 (726)
Q Consensus 330 GvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VP-i~~~e~~GT~I~l~lk 389 (726)
+ -|+.-.|+..+.|.|++.+. ...+.|..|.-...++ +......||+|++.+.
T Consensus 92 t---~SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~~~~~~GT~V~F~Pd 145 (198)
T 3ttz_A 92 T---SSVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKAD 145 (198)
T ss_dssp H---TCHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEEECSCCEEEEEEEEC
T ss_pred e---eEehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceeccCCCCCCcEEEEEEC
Confidence 2 12223467899999988774 2334554442111111 1123468999987654
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.69 E-value=8.2e-05 Score=67.33 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccceee
Q 004874 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGFK 334 (726)
+..+|.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+.+.-..+.+.. -+..|+|++
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 55789999999999987777776653 2345789999999999999998887633332211 134688875
Q ss_pred eecc---cccCeEEEEEe
Q 004874 335 TGAM---RLGKDALVLTQ 349 (726)
Q Consensus 335 SA~m---rLG~~V~V~TK 349 (726)
.+-- .+|.++.+.+.
T Consensus 114 i~~~~~~~~gG~i~~~~~ 131 (152)
T 1id0_A 114 VAREITEQYEGKIVAGES 131 (152)
T ss_dssp HHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeC
Confidence 4321 34666666553
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.65 E-value=0.0001 Score=67.75 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccceee
Q 004874 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGFK 334 (726)
+..+|.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+.+.-.++.+.. ..-+..|+|++
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 55789999999999987788887763 1245689999999999999998887633332211 11245688886
Q ss_pred eecc---cccCeEEEEEee
Q 004874 335 TGAM---RLGKDALVLTQT 350 (726)
Q Consensus 335 SA~m---rLG~~V~V~TK~ 350 (726)
.+-- .+|..+.+.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 4321 356777776653
No 37
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.35 E-value=0.00024 Score=70.20 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcccccCCC-----ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccc
Q 004874 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt-----~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqF 329 (726)
+..+|..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-.++.+.. .....+-.
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 557889999999998642 35555542 2245678999999999999999988622222211 11112346
Q ss_pred cceeeeec---ccccCeEEEEEee
Q 004874 330 GVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 330 GvGFKSA~---mrLG~~V~V~TK~ 350 (726)
|+|++.+- -.+|..+.|.|..
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEET
T ss_pred chHHHHHHHHHHHcCCEEEEEecC
Confidence 88875432 1356777776653
No 38
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.34 E-value=0.00021 Score=76.94 Aligned_cols=90 Identities=14% Similarity=0.283 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcccccCC---------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCC----
Q 004874 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA---------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~---- 321 (726)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 45789999999999843 267777763 23467899999999999999999987444433210
Q ss_pred -CCCccccccceeeeecc---cccCeEEEEEee
Q 004874 322 -DPNRIGRFGVGFKTGAM---RLGKDALVLTQT 350 (726)
Q Consensus 322 -d~~~IGqFGvGFKSA~m---rLG~~V~V~TK~ 350 (726)
.....+-+|+|+..+-. ..|.++.|.|..
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 12345668899864321 346777776643
No 39
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.25 E-value=0.00046 Score=68.05 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
+..+|.+||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+.+.-..+.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 56889999999999975 456666553 234678999999999999999888763333221 245888
Q ss_pred eeeec---ccccCeEEEEEe
Q 004874 333 FKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 333 FKSA~---mrLG~~V~V~TK 349 (726)
++.+- -.+|..+.+.+.
T Consensus 223 L~i~~~~~~~~gG~i~i~s~ 242 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESE 242 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEec
Confidence 76432 235666666554
No 40
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.23 E-value=0.00039 Score=63.17 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHcccccCC-----CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccc
Q 004874 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA-----t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGq 328 (726)
.+..+|.|||+||+.++. ..|.|.+.. ..+.-.|.|.|||.||+ ++.+.+.-..+.+. ..+.
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~ 105 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCC
Confidence 356889999999998863 556666653 23457889999999999 66666642222221 1123
Q ss_pred ccceeeeecccccCeEEEEEe
Q 004874 329 FGVGFKTGAMRLGKDALVLTQ 349 (726)
Q Consensus 329 FGvGFKSA~mrLG~~V~V~TK 349 (726)
.|+|+..+-- +.+.+.+.+.
T Consensus 106 ~GlGL~iv~~-~~~~i~~~~~ 125 (145)
T 1th8_A 106 SGMGFTIMEN-FMDEVIVESE 125 (145)
T ss_dssp CSCHHHHHHH-HSSEEEEEEE
T ss_pred CcchHHHHHH-HHheEEEEeC
Confidence 5888754432 4445555443
No 41
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.21 E-value=0.00032 Score=75.06 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcccccCC---------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCC----
Q 004874 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA---------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~---- 321 (726)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 45789999999999843 257877763 23467899999999999999999987444433210
Q ss_pred -CCCccccccceeeeec---ccccCeEEEEEee
Q 004874 322 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 322 -d~~~IGqFGvGFKSA~---mrLG~~V~V~TK~ 350 (726)
.....+-+|+|+..+- -..|.++.|.|..
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 1223456788886432 1357777776653
No 42
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.20 E-value=0.00027 Score=75.58 Aligned_cols=90 Identities=14% Similarity=0.288 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcccccCC---------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCC----
Q 004874 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA---------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~---- 321 (726)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 45789999999999842 247877763 23457899999999999999999987444333210
Q ss_pred CCCccccccceeeeec---ccccCeEEEEEee
Q 004874 322 DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 322 d~~~IGqFGvGFKSA~---mrLG~~V~V~TK~ 350 (726)
.....+-+|+|+..+- -.+|.++.|.|..
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 1223456788886432 1357777777753
No 43
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.20 E-value=0.00083 Score=60.82 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcccccCCC-ccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCcccccccee
Q 004874 255 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt-~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGF 333 (726)
+..+|.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+.+++.+.+.-...... ..-+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 457899999999998643 45555542 234578999999999999999998762222111 1123468887
Q ss_pred eeec---ccccCeEEEEEe
Q 004874 334 KTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 334 KSA~---mrLG~~V~V~TK 349 (726)
+.+- -.+|..+.+.+.
T Consensus 117 ~i~~~~~~~~gG~i~~~~~ 135 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENS 135 (150)
T ss_dssp HHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEeec
Confidence 5432 134566666553
No 44
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.20 E-value=0.00024 Score=67.65 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcccccCCCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccceee
Q 004874 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (726)
Q Consensus 255 pf~ALaELIDNA~DAgAt~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGFK 334 (726)
+..+|.+||+||+.+....-.|.|... ...|.|.|||.||+++++.+.+.-..+.+. ..-+..|+|++
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 557899999999999765545555421 122999999999999999988763222221 11234688875
Q ss_pred ee
Q 004874 335 TG 336 (726)
Q Consensus 335 SA 336 (726)
.+
T Consensus 186 i~ 187 (222)
T 3jz3_A 186 IV 187 (222)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 45
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.19 E-value=0.00031 Score=63.19 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcccccC--CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAg--At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++.+.+.-..+.+. +..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-------~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC-------CCCCcC
Confidence 5578999999999986 3566666553 234578899999999999999888753333221 235888
Q ss_pred eeeec--c--cccCeEEEEEe
Q 004874 333 FKTGA--M--RLGKDALVLTQ 349 (726)
Q Consensus 333 FKSA~--m--rLG~~V~V~TK 349 (726)
++.+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86542 2 35666666554
No 46
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.16 E-value=0.00021 Score=76.10 Aligned_cols=91 Identities=22% Similarity=0.327 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHcccccCC----------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCC--
Q 004874 254 WIFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD-- 321 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA----------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~-- 321 (726)
.+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~ 311 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQ 311 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-----
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCccc
Confidence 356889999999999843 167877763 23467899999999999999999887433332210
Q ss_pred -----------------CCCccccccceeeeecc---cccCeEEEEEee
Q 004874 322 -----------------DPNRIGRFGVGFKTGAM---RLGKDALVLTQT 350 (726)
Q Consensus 322 -----------------d~~~IGqFGvGFKSA~m---rLG~~V~V~TK~ 350 (726)
.....+-+|+|+..+-. .+|.++.|.|..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 312 DPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp --------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 11234567888864321 357777777753
No 47
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.15 E-value=0.00032 Score=75.96 Aligned_cols=90 Identities=19% Similarity=0.284 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcccccCC----------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCC----
Q 004874 255 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 320 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA----------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~---- 320 (726)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 45789999999999853 267777763 2346789999999999999999998744433211
Q ss_pred -CCCCccccccceeeeecc---cccCeEEEEEee
Q 004874 321 -DDPNRIGRFGVGFKTGAM---RLGKDALVLTQT 350 (726)
Q Consensus 321 -~d~~~IGqFGvGFKSA~m---rLG~~V~V~TK~ 350 (726)
......+-+|+|+..+-- ..|.++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 012234568899864321 346677776643
No 48
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.14 E-value=0.00019 Score=67.84 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcccccC--------------CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhH
Q 004874 255 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (726)
Q Consensus 255 pf~ALaELIDNA~DAg--------------At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL 307 (726)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHH
Confidence 4466999999999985 3456666553 234678999999999999987
No 49
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.09 E-value=0.00078 Score=65.04 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+.+.-..+.+. .+..|+|
T Consensus 124 l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~------~~g~GlG 191 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTKG------VKGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG------GGCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCCC------CCCcchh
Confidence 56789999999999963 456666653 234678999999999999999988763333221 2345888
Q ss_pred eeeec---ccccCeEEEEEee
Q 004874 333 FKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 333 FKSA~---mrLG~~V~V~TK~ 350 (726)
++.+- -.+|..+.+.+..
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~ 212 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEI 212 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 76432 1357777776653
No 50
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.02 E-value=0.00068 Score=63.39 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
+..+|.+||+||+++.. ..+.|.+... ...+.-.|.|.|||.||+.+++.+++.-..+.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 55789999999999964 4556665421 12345678999999999999998887633322211 11223456888
Q ss_pred eeeecc---cccCeEEEEEee
Q 004874 333 FKTGAM---RLGKDALVLTQT 350 (726)
Q Consensus 333 FKSA~m---rLG~~V~V~TK~ 350 (726)
++.+-. .+|..+.+.+..
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~ 139 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIE 139 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEET
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 864322 356667766653
No 51
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.98 E-value=0.0011 Score=58.48 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHcccccC-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh
Q 004874 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAg-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee 306 (726)
.+..++.|||+||+.+. +..|.|.+.. ..+ -.|+|.|||.||+++.
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc
Confidence 46788999999999986 6777777763 234 7889999999998764
No 52
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.97 E-value=0.00029 Score=63.79 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcccccC---CCccEEEEEEccccc----CCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccc
Q 004874 255 IFGAIAELVDNSRDAK---ATKLEISIESIYFKK----AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (726)
Q Consensus 255 pf~ALaELIDNA~DAg---At~V~I~I~~~~d~~----~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IG 327 (726)
+..+|.+||+||+.+. ...|.|.+....+.. .....-.|.|.|||.||+.+++.+.+.-..+.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 5578999999999985 456666665311000 0001457899999999999999888753333221 2
Q ss_pred cccceeeeec---ccccCeEEEEEee
Q 004874 328 RFGVGFKTGA---MRLGKDALVLTQT 350 (726)
Q Consensus 328 qFGvGFKSA~---mrLG~~V~V~TK~ 350 (726)
..|+|++.+- -.+|..+.+.+..
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 4688876432 2457777776653
No 53
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.72 E-value=0.0015 Score=70.08 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=53.0
Q ss_pred HHHHHHHHHcccccC------------C--CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhH--------------
Q 004874 256 FGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV-------------- 307 (726)
Q Consensus 256 f~ALaELIDNA~DAg------------A--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL-------------- 307 (726)
..+|.+||.||++++ . ..|.|.+.. .++.-.|.|.|||.||+++.+
T Consensus 108 ~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~ 181 (379)
T 1b3q_A 108 GEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESK 181 (379)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhh
Confidence 456899999999996 2 345555542 234578899999999999987
Q ss_pred ----------HhhhhcccCCCCCCCCCccccccceeeee---cccccCeEEEEEeeC
Q 004874 308 ----------VRMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (726)
Q Consensus 308 ----------~~~l~FG~S~K~~~d~~~IGqFGvGFKSA---~mrLG~~V~V~TK~~ 351 (726)
...|.-+++.+. ....++-.|+|+..+ .-.+|..+.|.|...
T Consensus 182 ~~~~~~~~~~~~iF~p~fst~~--~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 182 AATLSDQEILNFLFVPGFSTKE--KVSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhcCCHHHHHHHhcCCCCccCC--ccCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 334433344332 123345568888532 124688888887643
No 54
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.60 E-value=0.0011 Score=63.42 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcccccC-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhH
Q 004874 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (726)
Q Consensus 255 pf~ALaELIDNA~DAg-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL 307 (726)
+..++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++.+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC
Confidence 4578999999999875 4677777763 234678999999999999865
No 55
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.58 E-value=0.0013 Score=66.83 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcccccC--CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhhcccCCCCCCCCCccccccce
Q 004874 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (726)
Q Consensus 255 pf~ALaELIDNA~DAg--At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvG 332 (726)
+..+|.+||+||+++. ...|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-.++.+. +..|+|
T Consensus 245 l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlG 311 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 311 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccch
Confidence 5678999999999996 4667776653 234678999999999999999888763333321 234788
Q ss_pred eeeec--c--cccCeEEEEEe
Q 004874 333 FKTGA--M--RLGKDALVLTQ 349 (726)
Q Consensus 333 FKSA~--m--rLG~~V~V~TK 349 (726)
++.+- + ..|..+.+.+.
T Consensus 312 L~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 312 LSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CTHHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 75431 1 24555555543
No 56
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.35 E-value=0.0021 Score=57.31 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcccccC-CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhH
Q 004874 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (726)
Q Consensus 255 pf~ALaELIDNA~DAg-At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL 307 (726)
+..++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC
Confidence 5578999999999875 5677777763 234578999999999988754
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.93 E-value=0.0056 Score=53.62 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHcccccCC-CccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh
Q 004874 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAgA-t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee 306 (726)
.+..++.||++||+.+.. ..|.|.+.. ..+ -.|.|.|||.||+++.
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 356889999999999854 577777763 124 7889999999999875
No 58
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.062 Score=66.05 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=70.4
Q ss_pred HHHHHHHHHHccccc---C--CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHh--------HHhhhh-cccCCCCC
Q 004874 255 IFGAIAELVDNSRDA---K--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA 320 (726)
Q Consensus 255 pf~ALaELIDNA~DA---g--At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-FG~S~K~~ 320 (726)
+.-.+.|.||||.|. | .+.|.|.|.. +...|+|.|||-||+-+. ++-.|+ +..+.|..
T Consensus 60 L~hl~~EildNsiDea~ag~~~~~I~V~i~~--------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd 131 (1177)
T 4gfh_A 60 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 131 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred eeeEeeEEEEChHhHHhhCCCCCeEEEEEEC--------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcC
Confidence 445689999999993 3 2567777762 246999999999998642 112222 11222211
Q ss_pred --CCCCccccccceeeeecccccCeEEEEEe--eCCCcceEEEEeeecCCCceEEecC---ccCCCCCcEEEEEec
Q 004874 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQ--TADSRSIAFLSQSLNQGKDNLEIPI---VSYYRKGQFMELDTV 389 (726)
Q Consensus 321 --~d~~~IGqFGvGFKSA~mrLG~~V~V~TK--~~g~~si~~ls~Sf~eG~~~i~VPi---~~~e~~GT~I~l~lk 389 (726)
.-...-|..|||.+ +.-.|+..+.|.+. +.|. .+.++|..|......|. ......||+|+..+.
T Consensus 132 ~~~ykvSGGLHGVG~s-vVNALS~~~~vev~~~r~Gk----~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~PD 202 (1177)
T 4gfh_A 132 DDEKKVTGGRNGYGAK-LCNIFSTEFILETADLNVGQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPD 202 (1177)
T ss_dssp CSSCCCCSCCSSCHHH-HHHHTEEEEEEEEEETTTTE----EEEEEEETTTTEECCCEEEECCSSCCCEEEEEEEC
T ss_pred CCCCeEeccCCChhhh-HHhhcCCceEEEEEEEcCCE----EEEEEEECCcccCCCCeeecCCCCCCceEEEEEeC
Confidence 11234589999984 33346777766664 3332 34456655533222222 122346899887654
No 59
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=92.68 E-value=0.015 Score=68.49 Aligned_cols=46 Identities=41% Similarity=0.859 Sum_probs=37.6
Q ss_pred CceecCc--cchhhccCCCCCC-CCCCCCCceecCCCC-------CCCCCCCcccc
Q 004874 616 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWFCYMKPF-------EGLCDLPEQKV 661 (726)
Q Consensus 616 ~~WVQCD--~ClKWR~LP~~~~-~~~lp~~W~C~mNp~-------~~sC~~pEe~~ 661 (726)
..|+||- .|.|||+||.... ...++++..|.|-++ ...|+.||+.-
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 146 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLR 146 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCHH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCcccc
Confidence 5899999 9999999998865 356789999998641 37899999743
No 60
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=92.45 E-value=0.13 Score=51.14 Aligned_cols=82 Identities=9% Similarity=-0.090 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcccccCC--CccEEEEEEcccccCCCCcCEEEEEeCCCC--CCHHhHHhhhhcccCCCCCCCCCcccccc
Q 004874 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (726)
Q Consensus 255 pf~ALaELIDNA~DAgA--t~V~I~I~~~~d~~~~~~~~~L~I~DNG~G--Mt~eeL~~~l~FG~S~K~~~d~~~IGqFG 330 (726)
...++..||+||.+|.. ..|.|.+.. .++...|.|.|+|.| ++++.+...+.-..+. ..+-.|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~-------~~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAE-------GLGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCS-------SCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC-------CCCCcc
Confidence 45678899999999964 456666653 235678899999977 6666666665311111 122348
Q ss_pred ceeeeec---ccccCeEEEEEe
Q 004874 331 VGFKTGA---MRLGKDALVLTQ 349 (726)
Q Consensus 331 vGFKSA~---mrLG~~V~V~TK 349 (726)
+|++.+- -..|..+.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 8875331 135777777653
No 61
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=89.65 E-value=0.17 Score=42.28 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=24.5
Q ss_pred CCceecCccchhhccCC-CCCCCCCCCCCceec
Q 004874 615 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCD~ClKWR~LP-~~~~~~~lp~~W~C~ 646 (726)
+..+||||.|..|--+. .++.....|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 45799999999997665 244444678999995
No 62
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.63 E-value=0.12 Score=41.95 Aligned_cols=34 Identities=18% Similarity=0.461 Sum_probs=22.9
Q ss_pred CCCceecCccchhhccCC-CCCCC--CCCCCCceecC
Q 004874 614 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 647 (726)
Q Consensus 614 ~~~~WVQCD~ClKWR~LP-~~~~~--~~lp~~W~C~m 647 (726)
++..|||||.|..|=-+. .++.. ...++.|+|..
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 456899999999995543 22322 22468999854
No 63
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=87.94 E-value=0.19 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=24.6
Q ss_pred CCceecCccchhhccCC-CCCCCCCCCCCceec
Q 004874 615 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCD~ClKWR~LP-~~~~~~~lp~~W~C~ 646 (726)
+..+||||.|..|--+. -++.....|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 46999999999997766 344444678999985
No 64
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=85.45 E-value=0.39 Score=42.60 Aligned_cols=33 Identities=30% Similarity=0.815 Sum_probs=25.0
Q ss_pred CCceecCccchhhccCC-CCCCCCCCCCCceecC
Q 004874 615 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 647 (726)
Q Consensus 615 ~~~WVQCD~ClKWR~LP-~~~~~~~lp~~W~C~m 647 (726)
+..+||||.|.+|=-+. .++.....|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 45899999999997665 2333467789999964
No 65
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.92 E-value=0.51 Score=39.37 Aligned_cols=32 Identities=22% Similarity=0.804 Sum_probs=22.8
Q ss_pred CceecCccchhhccCCC-CCC-CCCCCCCceecC
Q 004874 616 QEWVQCNKCRKWRMLDP-GFD-TKSLPVEWFCYM 647 (726)
Q Consensus 616 ~~WVQCD~ClKWR~LP~-~~~-~~~lp~~W~C~m 647 (726)
..|||||.|..|--+.= ++. ...+|+.|+|..
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~ 62 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCFR 62 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECCC
Confidence 47999999999966542 332 235789999953
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=84.15 E-value=0.8 Score=49.25 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHcccccC-----CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHH
Q 004874 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (726)
Q Consensus 254 ~pf~ALaELIDNA~DAg-----At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 305 (726)
.+..++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|++..
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC
Confidence 45689999999999986 56788877631 1235788999999999875
No 67
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=73.38 E-value=1.5 Score=43.06 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=30.4
Q ss_pred HHHHHcccccC--------CCccEEEEEEcccccCCCCcCEEEEEeCCCCCCHHhHHhhhh
Q 004874 260 AELVDNSRDAK--------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (726)
Q Consensus 260 aELIDNA~DAg--------At~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (726)
-.|++||.+|. ...|.|.+.. +. .++...+.|.|+|.|++.+.+.+.+.
T Consensus 111 gnLi~na~~Ai~~~~~~~~~~~I~i~i~~--~~--~~~~l~i~V~d~G~~i~~e~~~~if~ 167 (192)
T 1ixm_A 111 AKLMRKLFHLFDQAVSRESENHLTVSLQT--DH--PDRQLILYLDFHGAFADPSAFDDIRQ 167 (192)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCEEEEEEEC--CC--SSSSCEEEEEEESCBSCGGGCC----
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEEEE--ec--CCCEEEEEEEeCCCCCCHHHHHHHHh
Confidence 44555555552 4567777762 10 03468999999999999998877764
No 68
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=72.92 E-value=1.2 Score=34.88 Aligned_cols=35 Identities=26% Similarity=0.690 Sum_probs=22.5
Q ss_pred CCCCCceecCc-cchhhccCC-CCCCC-CCCCCCceec
Q 004874 612 YKPDQEWVQCN-KCRKWRMLD-PGFDT-KSLPVEWFCY 646 (726)
Q Consensus 612 ~~~~~~WVQCD-~ClKWR~LP-~~~~~-~~lp~~W~C~ 646 (726)
|.++..||||| .|..|=-+. .++.. ...+++|+|.
T Consensus 12 ~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 12 CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 34467899999 899995543 23321 1124889885
No 69
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=71.31 E-value=0.88 Score=38.23 Aligned_cols=34 Identities=15% Similarity=0.383 Sum_probs=21.6
Q ss_pred CCCceecCccchhhccCC-CCCCC--CCCCCCceecC
Q 004874 614 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 647 (726)
Q Consensus 614 ~~~~WVQCD~ClKWR~LP-~~~~~--~~lp~~W~C~m 647 (726)
.+..|||||.|..|=-.. -++.. ...++.|+|..
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN 57 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence 456999999999995332 12221 12347898853
No 70
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=71.13 E-value=1.3 Score=36.57 Aligned_cols=16 Identities=38% Similarity=1.039 Sum_probs=14.1
Q ss_pred CCCCCceecCc-cchhh
Q 004874 612 YKPDQEWVQCN-KCRKW 627 (726)
Q Consensus 612 ~~~~~~WVQCD-~ClKW 627 (726)
|.++..||||| .|.+|
T Consensus 18 ~~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKW 34 (65)
T ss_dssp CCTTSCEEEBTTTTCCE
T ss_pred cCCCCCeEecccCcccc
Confidence 45678999999 99999
No 71
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=70.84 E-value=0.66 Score=44.37 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=22.0
Q ss_pred CCCceecCccchhhccCC-CCCC--CCCCCCCceecC
Q 004874 614 PDQEWVQCNKCRKWRMLD-PGFD--TKSLPVEWFCYM 647 (726)
Q Consensus 614 ~~~~WVQCD~ClKWR~LP-~~~~--~~~lp~~W~C~m 647 (726)
....|||||.|..|=-.. .++. ....++.|+|..
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 346899999999993322 1111 124578999964
No 72
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=63.87 E-value=1.4 Score=39.60 Aligned_cols=18 Identities=33% Similarity=0.840 Sum_probs=13.9
Q ss_pred CCCCCceecCc-cchhhcc
Q 004874 612 YKPDQEWVQCN-KCRKWRM 629 (726)
Q Consensus 612 ~~~~~~WVQCD-~ClKWR~ 629 (726)
|.++..||||| .|..|=-
T Consensus 13 ~~~~~~mi~Cdd~C~~WfH 31 (105)
T 2xb1_A 13 VNDDQDAILCEASCQKWFH 31 (105)
T ss_dssp CCTTSCEEECTTTTCCEEE
T ss_pred cCCCCCEEEecCCcccccc
Confidence 33566899998 9999943
No 73
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.05 E-value=1.9 Score=36.42 Aligned_cols=34 Identities=21% Similarity=0.705 Sum_probs=23.1
Q ss_pred CCCceecCc--cchhhccCC-CCCCC------CCCCCCceecC
Q 004874 614 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWFCYM 647 (726)
Q Consensus 614 ~~~~WVQCD--~ClKWR~LP-~~~~~------~~lp~~W~C~m 647 (726)
.+..||||| .|..|--+. -++.. ...|++|+|..
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~ 68 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEI 68 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCC
Confidence 356999999 999996543 12211 15789999953
No 74
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.34 E-value=2.5 Score=35.71 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCCceecCccchhhccCC-CCCC--CCCCCCCceec
Q 004874 614 PDQEWVQCNKCRKWRMLD-PGFD--TKSLPVEWFCY 646 (726)
Q Consensus 614 ~~~~WVQCD~ClKWR~LP-~~~~--~~~lp~~W~C~ 646 (726)
.+..|||||.|..|=-.. .++. +...++.|+|.
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECC
Confidence 357999999999993322 1111 12347899985
No 75
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=57.62 E-value=5.5 Score=32.77 Aligned_cols=32 Identities=22% Similarity=0.745 Sum_probs=23.0
Q ss_pred CCceecCcc--chhhccCC-CCCC-----CCCCCCCceec
Q 004874 615 DQEWVQCNK--CRKWRMLD-PGFD-----TKSLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCD~--ClKWR~LP-~~~~-----~~~lp~~W~C~ 646 (726)
+..+||||. |..|--.. -++. ....|++|||.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 458999994 99997765 2331 24578899995
No 76
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=56.46 E-value=5.2 Score=33.22 Aligned_cols=32 Identities=22% Similarity=0.724 Sum_probs=19.4
Q ss_pred CCceecCccchhhccCC-CCCCCC-CCCCCceec
Q 004874 615 DQEWVQCNKCRKWRMLD-PGFDTK-SLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCD~ClKWR~LP-~~~~~~-~lp~~W~C~ 646 (726)
...|||||.|..|=-+. .++... ...+.|||.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 34899999999995221 011111 123789995
No 77
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.26 E-value=3.8 Score=34.23 Aligned_cols=32 Identities=19% Similarity=0.566 Sum_probs=20.1
Q ss_pred CCceecCccchhhccCC-CCCCCC------CCCCCceec
Q 004874 615 DQEWVQCNKCRKWRMLD-PGFDTK------SLPVEWFCY 646 (726)
Q Consensus 615 ~~~WVQCD~ClKWR~LP-~~~~~~------~lp~~W~C~ 646 (726)
+..|||||.|..|=-+. -++... ..++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 45899999999994332 112111 136889985
No 78
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=52.55 E-value=4.8 Score=45.59 Aligned_cols=36 Identities=28% Similarity=0.757 Sum_probs=24.9
Q ss_pred CCCCCceecCccchhhccCC-CCCCC--CCCCCCceecC
Q 004874 612 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 647 (726)
Q Consensus 612 ~~~~~~WVQCD~ClKWR~LP-~~~~~--~~lp~~W~C~m 647 (726)
.-++..|||||.|..|=-.. -++.. ....++|+|-.
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 44678999999999996543 23322 34568999943
No 79
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.63 E-value=7.1 Score=34.39 Aligned_cols=30 Identities=30% Similarity=0.829 Sum_probs=19.4
Q ss_pred CceecCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 004874 616 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCD~--Cl-KWR~LP~-~~~~~~lp~~W~C~ 646 (726)
..+||||. |. .|=-+.= ++ ....+++|||.
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl-~~~p~g~W~Cp 80 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGL-TTKPRGKWFCP 80 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTC-SSCCCSSCCCT
T ss_pred CCEeEecCCCCCCCCEecccCCc-CcCCCCCEECc
Confidence 47999999 77 8954431 22 12234799996
No 80
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=46.14 E-value=10 Score=31.73 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=19.7
Q ss_pred CceecCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 004874 616 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCD~--Cl-KWR~LP~-~~~~~~lp~~W~C~ 646 (726)
..+|+||. |. .|=-+.= ++. ....++|||.
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp 60 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 60 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCT
T ss_pred CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECC
Confidence 58999999 87 7955432 221 2224899995
No 81
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=44.11 E-value=12 Score=37.41 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCeEEEEEec-------eeEEEEeCCC
Q 004874 88 RRFLIYLQGRDMVAIAKFK-------FWEFYILPPD 116 (726)
Q Consensus 88 ~~f~~~l~~~~~~~~~~~~-------~~~~~~~~~~ 116 (726)
..|.+||+.-.-+|||.+. .+-+|||||-
T Consensus 128 ~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPC 163 (195)
T 1ow1_A 128 AAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPC 163 (195)
T ss_dssp HHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSS
T ss_pred HHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCc
Confidence 5599999999999999998 5999999997
No 82
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=43.52 E-value=3.6 Score=46.14 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCCceecCccchhhccCC-CCCCC--CCCCCCceecC
Q 004874 614 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 647 (726)
Q Consensus 614 ~~~~WVQCD~ClKWR~LP-~~~~~--~~lp~~W~C~m 647 (726)
++..|||||.|..|=-.. -++.. ...++.|+|..
T Consensus 48 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 48 VNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp TTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 356899999999995432 12221 24468899964
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=43.04 E-value=7.5 Score=38.19 Aligned_cols=16 Identities=31% Similarity=0.895 Sum_probs=13.0
Q ss_pred CceecCccchhhccCC
Q 004874 616 QEWVQCNKCRKWRMLD 631 (726)
Q Consensus 616 ~~WVQCD~ClKWR~LP 631 (726)
..|||||.|..|=-..
T Consensus 19 ~~MIqCd~C~~W~H~~ 34 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHSK 34 (183)
T ss_dssp CCEEECTTTCCEEEGG
T ss_pred CCeEECCCCCcccchh
Confidence 3699999999996543
No 84
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=38.99 E-value=10 Score=30.92 Aligned_cols=30 Identities=20% Similarity=0.691 Sum_probs=19.1
Q ss_pred CceecCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 004874 616 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCD~--Cl-KWR~LP~-~~~~~~lp~~W~C~ 646 (726)
..+||||. |. .|=-+.= ++. ....++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECc
Confidence 47999999 55 8954431 222 2235799995
No 85
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.40 E-value=10 Score=30.48 Aligned_cols=30 Identities=23% Similarity=0.724 Sum_probs=19.0
Q ss_pred CceecCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 004874 616 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCD~--Cl-KWR~LP~-~~~~~~lp~~W~C~ 646 (726)
..+||||. |. .|=-+.= ++. ....++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECc
Confidence 47999999 87 7954431 221 2223789995
No 86
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=34.12 E-value=9.7 Score=35.28 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHhhcCC
Q 004874 83 DHNEWRRFLIYLQGRD 98 (726)
Q Consensus 83 ~~~ew~~f~~~l~~~~ 98 (726)
...+|++||||+.+++
T Consensus 86 s~~~WdRFMRFMeRYA 101 (120)
T 2kvo_A 86 SQPEWDRFMRFMERYG 101 (120)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3469999999998875
No 87
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.95 E-value=20 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.626 Sum_probs=18.8
Q ss_pred CceecCccch---hhccCC-CCCCCCCCCCCceec
Q 004874 616 QEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCD~Cl---KWR~LP-~~~~~~~lp~~W~C~ 646 (726)
..+|+||.|. .|=-+. -++. ....++|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCC-cCCCCCccCC
Confidence 3799999966 895443 1222 2223689985
No 88
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=29.49 E-value=18 Score=29.10 Aligned_cols=30 Identities=27% Similarity=0.815 Sum_probs=19.1
Q ss_pred CceecCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 004874 616 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 646 (726)
Q Consensus 616 ~~WVQCD~--Cl-KWR~LP-~~~~~~~lp~~W~C~ 646 (726)
...|+||. |. .|=-+. .++. ....++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECc
Confidence 58999999 66 785443 1221 1224889995
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=28.54 E-value=13 Score=32.93 Aligned_cols=11 Identities=45% Similarity=1.347 Sum_probs=9.8
Q ss_pred eecCccchhhc
Q 004874 618 WVQCNKCRKWR 628 (726)
Q Consensus 618 WVQCD~ClKWR 628 (726)
.||||.|..|=
T Consensus 2 mi~c~~c~~w~ 12 (140)
T 2ku7_A 2 MMQCGKCDRWV 12 (140)
T ss_dssp CCCCSCCSSCH
T ss_pred ccccccCCCcc
Confidence 69999999993
No 90
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=25.73 E-value=41 Score=32.93 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=18.8
Q ss_pred cceEEEEeechhhhHHHhhccccccCCCCcceEEEEecc
Q 004874 518 NCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVS 556 (726)
Q Consensus 518 ~~G~~vYhkNRLIk~y~rVg~ql~~~~~GrGVIGVvE~n 556 (726)
-+..|+||.|. .+.|||||+|+-
T Consensus 62 GD~vfFYHS~c----------------~~pgIvGi~eVv 84 (172)
T 2ar1_A 62 GDKVLFYHSNT----------------KEPGVAGLAEVV 84 (172)
T ss_dssp TCEEEEEECSS----------------SSCEEEEEEEEE
T ss_pred CCEEEEEecCC----------------CCCEEEEEEEEe
Confidence 47889998773 578999999984
No 91
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=24.24 E-value=45 Score=32.73 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=18.7
Q ss_pred cceEEEEeechhhhHHHhhccccccCCCCcceEEEEec
Q 004874 518 NCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDV 555 (726)
Q Consensus 518 ~~G~~vYhkNRLIk~y~rVg~ql~~~~~GrGVIGVvE~ 555 (726)
-+..|+||-|. .+.||+||+|+
T Consensus 55 GD~~fFYHSnc----------------k~pgIvGi~eV 76 (176)
T 3eop_A 55 GEEAFFYHSNC----------------KEPGIAGLMKI 76 (176)
T ss_dssp TCEEEEEECCS----------------SSCEEEEEEEE
T ss_pred CCEEEEEecCC----------------CCCeEEEEEEE
Confidence 48899999885 47899999998
No 92
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=24.07 E-value=44 Score=32.18 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=18.0
Q ss_pred cceEEEEeechhhhHHHhhccccccCCCCcceEEEEecc
Q 004874 518 NCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVS 556 (726)
Q Consensus 518 ~~G~~vYhkNRLIk~y~rVg~ql~~~~~GrGVIGVvE~n 556 (726)
-+..|+||.| .+.|||||+|+-
T Consensus 47 GD~~fFYHS~-----------------~~~gIvGi~eVv 68 (155)
T 1zce_A 47 GDKGFFYHSN-----------------EGLDVVGIVEVC 68 (155)
T ss_dssp TCEEEEEETT-----------------TTCEEEEEEEEE
T ss_pred CCEEEEEEeC-----------------CCCceEEEEEEe
Confidence 4788899864 578999999984
No 93
>2d16_A Hypothetical protein PH1918; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=23.92 E-value=29 Score=33.47 Aligned_cols=13 Identities=54% Similarity=0.872 Sum_probs=11.7
Q ss_pred CCCCcceEEEEec
Q 004874 543 GDTGRGVIGVIDV 555 (726)
Q Consensus 543 ~~~GrGVIGVvE~ 555 (726)
...||||+||||-
T Consensus 123 t~~GrgvlGVvDG 135 (162)
T 2d16_A 123 TELGRAVIGVVDG 135 (162)
T ss_dssp CSSCEEEEEEEES
T ss_pred cCCCcEEEEEecC
Confidence 3689999999998
No 94
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=23.77 E-value=30 Score=33.43 Aligned_cols=13 Identities=69% Similarity=1.112 Sum_probs=11.7
Q ss_pred CCCCcceEEEEec
Q 004874 543 GDTGRGVIGVIDV 555 (726)
Q Consensus 543 ~~~GrGVIGVvE~ 555 (726)
...||||+||||-
T Consensus 124 t~~GrgvlGVvDG 136 (162)
T 2ekm_A 124 TDQGRGVIGVVDG 136 (162)
T ss_dssp CSSCEEEEEEEES
T ss_pred cCCCcEEEEEecC
Confidence 3689999999998
No 95
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=22.77 E-value=51 Score=31.81 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=18.6
Q ss_pred cceEEEEeechhhhHHHhhccccccCCCCcceEEEEecc
Q 004874 518 NCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVS 556 (726)
Q Consensus 518 ~~G~~vYhkNRLIk~y~rVg~ql~~~~~GrGVIGVvE~n 556 (726)
-+..|+||-|. .+.|||||+|+-
T Consensus 44 GD~~ffYHS~c----------------~~pgIvGi~eVv 66 (157)
T 2eve_A 44 GDEFFFYHSSC----------------PEPGIAGIGKIV 66 (157)
T ss_dssp TCEEEEEECSS----------------SSCEEEEEEEEE
T ss_pred CCEEEEEecCC----------------CCCEEEEEEEEe
Confidence 47888998763 578999999983
No 96
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=22.68 E-value=32 Score=33.41 Aligned_cols=13 Identities=62% Similarity=1.132 Sum_probs=11.7
Q ss_pred CCCCcceEEEEec
Q 004874 543 GDTGRGVIGVIDV 555 (726)
Q Consensus 543 ~~~GrGVIGVvE~ 555 (726)
...||||+||||-
T Consensus 135 t~qGRgvlGVvDG 147 (173)
T 1rlh_A 135 GERGNGVLGVIDG 147 (173)
T ss_dssp CSSSEEEEEEEES
T ss_pred cCCCcEEEEEecC
Confidence 3689999999998
No 97
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=22.36 E-value=50 Score=31.43 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=17.9
Q ss_pred cceEEEEeechhhhHHHhhccccccCCCCcceEEEEecc
Q 004874 518 NCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVS 556 (726)
Q Consensus 518 ~~G~~vYhkNRLIk~y~rVg~ql~~~~~GrGVIGVvE~n 556 (726)
-+..|+||.| .+.|||||+|+-
T Consensus 46 GD~~ffYHS~-----------------~~~gIvGi~eVv 67 (145)
T 2gbs_A 46 GDRAFYYHSN-----------------EGKEIVGIAEII 67 (145)
T ss_dssp TCEEEEEETT-----------------TTCEEEEEEEEE
T ss_pred CCEEEEEEeC-----------------CCCceEEEEEEE
Confidence 4788899864 578999999994
No 98
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=21.88 E-value=29 Score=33.41 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=11.2
Q ss_pred CCCcceEEEEec
Q 004874 544 DTGRGVIGVIDV 555 (726)
Q Consensus 544 ~~GrGVIGVvE~ 555 (726)
..||||+||||-
T Consensus 124 ~~GrgvlGVvDG 135 (161)
T 1vgg_A 124 GEQRAILGVMDG 135 (161)
T ss_dssp TTEEEEEEEEES
T ss_pred CCCcEEEEEecC
Confidence 689999999998
Done!