Query 004875
Match_columns 726
No_of_seqs 515 out of 3060
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 3E-117 6E-122 957.9 45.4 529 19-642 43-583 (674)
2 KOG0923 mRNA splicing factor A 100.0 3E-116 7E-121 935.7 42.8 568 22-695 260-840 (902)
3 KOG0924 mRNA splicing factor A 100.0 1E-113 3E-118 915.4 38.6 549 19-661 348-911 (1042)
4 KOG0925 mRNA splicing factor A 100.0 1E-107 2E-112 844.1 35.3 549 22-676 42-608 (699)
5 KOG0920 ATP-dependent RNA heli 100.0 5E-104 1E-108 899.1 45.3 558 20-637 166-740 (924)
6 PRK11131 ATP-dependent RNA hel 100.0 1E-101 3E-106 912.9 55.4 583 23-697 70-656 (1294)
7 COG1643 HrpA HrpA-like helicas 100.0 2.7E-99 6E-104 865.9 49.1 539 16-636 39-591 (845)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.3E-97 3E-102 882.6 52.7 554 23-665 63-621 (1283)
9 KOG0926 DEAH-box RNA helicase 100.0 1.1E-90 2.5E-95 751.1 37.6 533 15-631 244-918 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8.4E-81 1.8E-85 725.8 47.3 440 26-520 1-445 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 5.2E-78 1.1E-82 704.2 48.6 440 24-518 2-448 (812)
12 KOG0921 Dosage compensation co 100.0 1E-58 2.2E-63 507.4 25.3 557 21-634 372-966 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 5.2E-56 1.1E-60 506.5 32.7 395 30-501 167-594 (675)
14 PRK01172 ski2-like helicase; P 100.0 9.3E-39 2E-43 374.8 43.5 419 25-503 20-493 (674)
15 PRK02362 ski2-like helicase; P 100.0 2.7E-37 5.9E-42 364.9 43.6 423 27-502 23-514 (737)
16 KOG0331 ATP-dependent RNA heli 100.0 6.1E-38 1.3E-42 339.9 27.7 316 28-404 114-451 (519)
17 PRK00254 ski2-like helicase; P 100.0 4.3E-36 9.3E-41 353.9 39.6 432 27-516 23-523 (720)
18 KOG0330 ATP-dependent RNA heli 100.0 6.6E-38 1.4E-42 318.9 20.2 312 28-403 84-409 (476)
19 PRK11776 ATP-dependent RNA hel 100.0 1.2E-36 2.7E-41 342.2 31.2 310 28-403 27-351 (460)
20 PRK04837 ATP-dependent RNA hel 100.0 2.7E-36 5.8E-41 335.9 32.1 314 27-404 30-365 (423)
21 PTZ00110 helicase; Provisional 100.0 1.9E-36 4.2E-41 344.7 30.3 312 28-403 153-486 (545)
22 PRK11192 ATP-dependent RNA hel 100.0 5.3E-36 1.1E-40 334.9 31.9 318 27-406 23-357 (434)
23 PRK10590 ATP-dependent RNA hel 100.0 9.5E-36 2.1E-40 333.8 32.2 312 27-404 23-355 (456)
24 COG0513 SrmB Superfamily II DN 100.0 8.6E-36 1.9E-40 336.3 28.8 313 28-401 52-380 (513)
25 PRK11634 ATP-dependent RNA hel 100.0 1.6E-35 3.4E-40 340.2 30.4 311 27-403 28-354 (629)
26 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-35 3.2E-40 336.4 29.9 311 28-403 144-477 (518)
27 PRK04537 ATP-dependent RNA hel 100.0 3.5E-35 7.6E-40 335.5 30.7 313 27-403 31-366 (572)
28 PTZ00424 helicase 45; Provisio 100.0 9.6E-35 2.1E-39 321.9 30.0 314 28-404 51-377 (401)
29 PRK01297 ATP-dependent RNA hel 100.0 4.3E-34 9.4E-39 322.5 31.5 309 28-403 110-444 (475)
30 TIGR00614 recQ_fam ATP-depende 100.0 3.8E-33 8.2E-38 313.8 30.3 308 28-404 12-336 (470)
31 KOG0333 U5 snRNP-like RNA heli 100.0 4E-34 8.6E-39 300.6 20.6 307 28-402 268-625 (673)
32 KOG0345 ATP-dependent RNA heli 100.0 4.9E-34 1.1E-38 296.9 20.1 332 28-418 29-384 (567)
33 KOG0342 ATP-dependent RNA heli 100.0 2.4E-33 5.2E-38 293.9 22.0 317 27-402 104-438 (543)
34 PLN03137 ATP-dependent DNA hel 100.0 1.2E-32 2.7E-37 320.0 29.4 311 28-404 461-790 (1195)
35 PRK11057 ATP-dependent DNA hel 100.0 1.8E-32 4E-37 316.3 29.9 311 27-404 25-346 (607)
36 KOG0338 ATP-dependent RNA heli 100.0 1E-33 2.2E-38 296.4 15.4 317 28-404 204-536 (691)
37 KOG0328 Predicted ATP-dependen 100.0 1.2E-32 2.6E-37 269.3 19.8 315 28-406 50-378 (400)
38 KOG0340 ATP-dependent RNA heli 100.0 2E-32 4.4E-37 275.9 21.2 315 28-404 30-364 (442)
39 PRK13767 ATP-dependent helicas 100.0 2.1E-31 4.6E-36 317.8 33.3 318 28-398 33-397 (876)
40 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-32 3.6E-37 289.5 20.3 315 27-402 91-423 (758)
41 TIGR03817 DECH_helic helicase/ 100.0 7.7E-32 1.7E-36 315.6 26.0 322 27-400 36-385 (742)
42 COG1204 Superfamily II helicas 100.0 6E-32 1.3E-36 313.1 24.4 426 27-502 31-526 (766)
43 TIGR01389 recQ ATP-dependent D 100.0 3.6E-31 7.7E-36 306.3 30.3 306 28-404 14-334 (591)
44 COG1202 Superfamily II helicas 100.0 3.2E-31 6.9E-36 281.1 25.9 420 28-519 217-681 (830)
45 KOG0335 ATP-dependent RNA heli 100.0 2.5E-31 5.4E-36 283.7 17.7 312 27-399 96-442 (482)
46 KOG0339 ATP-dependent RNA heli 100.0 5E-31 1.1E-35 275.7 19.1 313 27-404 245-578 (731)
47 COG1111 MPH1 ERCC4-like helica 100.0 1E-29 2.2E-34 268.8 28.2 355 23-401 11-481 (542)
48 KOG0336 ATP-dependent RNA heli 100.0 4.6E-31 1E-35 269.5 17.0 314 27-404 242-575 (629)
49 KOG0332 ATP-dependent RNA heli 100.0 6.5E-30 1.4E-34 259.2 22.4 316 29-401 114-443 (477)
50 KOG0348 ATP-dependent RNA heli 100.0 3.4E-30 7.5E-35 271.4 19.7 351 27-420 159-575 (708)
51 TIGR00580 mfd transcription-re 100.0 2.4E-29 5.2E-34 297.3 28.7 299 27-401 451-770 (926)
52 KOG0326 ATP-dependent RNA heli 100.0 7.6E-31 1.6E-35 260.6 11.9 310 29-403 109-431 (459)
53 PRK10917 ATP-dependent DNA hel 100.0 6.6E-29 1.4E-33 289.7 29.8 300 26-399 260-587 (681)
54 KOG0347 RNA helicase [RNA proc 100.0 1.3E-30 2.8E-35 275.3 13.0 324 28-402 204-571 (731)
55 COG1201 Lhr Lhr-like helicases 100.0 5.1E-29 1.1E-33 284.9 26.1 337 28-425 23-396 (814)
56 TIGR01587 cas3_core CRISPR-ass 100.0 5.9E-29 1.3E-33 271.3 21.9 295 44-402 1-337 (358)
57 PRK10689 transcription-repair 100.0 1.7E-28 3.7E-33 295.9 27.8 299 27-400 600-918 (1147)
58 TIGR00643 recG ATP-dependent D 100.0 2.5E-28 5.4E-33 283.2 27.6 298 27-399 235-564 (630)
59 KOG0354 DEAD-box like helicase 100.0 2.2E-28 4.7E-33 273.2 24.8 353 23-402 58-530 (746)
60 COG0514 RecQ Superfamily II DN 100.0 2.1E-28 4.5E-33 270.7 23.8 307 30-404 20-340 (590)
61 PRK09751 putative ATP-dependen 100.0 2.4E-28 5.2E-33 295.9 23.6 303 47-392 1-374 (1490)
62 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.7E-27 3.7E-32 273.9 28.4 329 27-424 15-415 (844)
63 KOG0341 DEAD-box protein abstr 100.0 1.5E-29 3.2E-34 256.9 10.0 308 27-401 192-528 (610)
64 KOG0350 DEAD-box ATP-dependent 100.0 2.3E-28 4.9E-33 256.2 17.7 316 27-402 159-541 (620)
65 PHA02558 uvsW UvsW helicase; P 100.0 4.3E-26 9.4E-31 258.1 30.0 316 25-393 112-443 (501)
66 KOG0952 DNA/RNA helicase MER3/ 99.9 1.7E-26 3.8E-31 260.0 25.1 449 28-519 111-641 (1230)
67 TIGR03158 cas3_cyano CRISPR-as 99.9 1.1E-25 2.5E-30 243.8 27.5 310 31-387 1-357 (357)
68 PRK13766 Hef nuclease; Provisi 99.9 1.5E-25 3.2E-30 268.1 29.9 359 18-401 6-479 (773)
69 KOG4284 DEAD box protein [Tran 99.9 4.1E-26 8.8E-31 244.8 20.3 314 28-400 48-378 (980)
70 KOG0346 RNA helicase [RNA proc 99.9 2.7E-26 5.9E-31 237.2 18.0 304 29-402 43-411 (569)
71 KOG0334 RNA helicase [RNA proc 99.9 2.6E-26 5.6E-31 261.2 17.6 313 27-402 387-721 (997)
72 KOG0327 Translation initiation 99.9 1.6E-25 3.6E-30 229.6 18.4 311 28-406 49-375 (397)
73 KOG0948 Nuclear exosomal RNA h 99.9 8.5E-25 1.8E-29 238.2 22.3 347 26-401 128-539 (1041)
74 TIGR00603 rad25 DNA repair hel 99.9 7.1E-25 1.5E-29 250.1 22.5 325 23-402 251-608 (732)
75 KOG0344 ATP-dependent RNA heli 99.9 2.8E-25 6E-30 238.8 17.4 314 29-403 160-497 (593)
76 KOG0947 Cytoplasmic exosomal R 99.9 6.4E-24 1.4E-28 236.7 24.5 348 26-401 296-723 (1248)
77 KOG0337 ATP-dependent RNA heli 99.9 3E-25 6.4E-30 228.6 12.8 308 29-402 45-369 (529)
78 KOG0352 ATP-dependent DNA heli 99.9 2E-24 4.3E-29 222.3 14.6 318 29-405 22-366 (641)
79 PRK09401 reverse gyrase; Revie 99.9 1.2E-23 2.6E-28 254.6 23.0 273 26-357 79-411 (1176)
80 COG4581 Superfamily II RNA hel 99.9 4E-23 8.7E-28 239.7 22.8 349 25-399 117-535 (1041)
81 KOG0951 RNA helicase BRR2, DEA 99.9 1.9E-22 4.2E-27 229.9 26.3 414 28-492 310-821 (1674)
82 PRK05580 primosome assembly pr 99.9 8.2E-23 1.8E-27 237.8 23.7 322 24-397 141-545 (679)
83 COG4098 comFA Superfamily II D 99.9 5.7E-22 1.2E-26 200.0 25.9 301 28-397 98-412 (441)
84 PRK14701 reverse gyrase; Provi 99.9 6.7E-23 1.4E-27 253.1 22.5 314 27-403 79-458 (1638)
85 TIGR03714 secA2 accessory Sec 99.9 4.5E-22 9.8E-27 227.2 26.6 105 276-402 424-538 (762)
86 COG1061 SSL2 DNA or RNA helica 99.9 8.1E-22 1.8E-26 219.1 27.4 327 23-391 32-378 (442)
87 COG1205 Distinct helicase fami 99.9 2.5E-22 5.4E-27 236.4 24.1 321 26-400 69-421 (851)
88 KOG0351 ATP-dependent DNA heli 99.9 7.9E-23 1.7E-27 238.9 17.6 311 29-406 266-597 (941)
89 PRK12898 secA preprotein trans 99.9 1.1E-21 2.5E-26 221.5 23.3 104 277-402 474-587 (656)
90 PRK09694 helicase Cas3; Provis 99.9 2.1E-21 4.6E-26 227.7 26.4 318 25-389 284-662 (878)
91 PRK09200 preprotein translocas 99.9 1E-21 2.2E-26 226.4 22.9 106 276-402 428-542 (790)
92 TIGR00595 priA primosomal prot 99.9 2.1E-22 4.6E-27 226.4 16.9 293 46-396 1-376 (505)
93 COG1200 RecG RecG-like helicas 99.9 2.3E-21 5E-26 214.1 23.7 299 26-400 261-590 (677)
94 TIGR00963 secA preprotein tran 99.9 8.5E-22 1.9E-26 223.5 19.5 105 276-402 405-518 (745)
95 TIGR01054 rgy reverse gyrase. 99.9 1.2E-20 2.6E-25 229.1 26.3 274 26-358 77-411 (1171)
96 PRK11448 hsdR type I restricti 99.9 4.8E-20 1E-24 222.3 27.9 350 26-408 412-823 (1123)
97 COG1197 Mfd Transcription-repa 99.9 2.2E-20 4.7E-25 217.1 22.6 298 29-401 596-913 (1139)
98 KOG0921 Dosage compensation co 99.8 8.7E-22 1.9E-26 218.0 0.2 554 22-644 401-982 (1282)
99 PRK04914 ATP-dependent helicas 99.8 1.7E-18 3.7E-23 204.6 26.4 107 276-401 493-605 (956)
100 KOG0950 DNA polymerase theta/e 99.8 3.5E-19 7.5E-24 201.0 19.3 330 27-403 223-613 (1008)
101 KOG0349 Putative DEAD-box RNA 99.8 2.7E-18 5.9E-23 177.3 13.5 258 108-399 334-613 (725)
102 COG1203 CRISPR-associated heli 99.8 2.8E-17 6E-22 193.5 22.2 317 23-400 191-549 (733)
103 KOG0353 ATP-dependent DNA heli 99.8 2.7E-17 5.8E-22 167.4 17.6 309 29-402 96-468 (695)
104 KOG0329 ATP-dependent RNA heli 99.7 8.1E-18 1.8E-22 163.3 11.8 276 28-401 65-355 (387)
105 PRK13104 secA preprotein trans 99.7 1.7E-16 3.6E-21 183.1 22.7 79 259-344 431-509 (896)
106 COG4096 HsdR Type I site-speci 99.7 3E-16 6.5E-21 175.9 22.5 357 24-425 162-572 (875)
107 PRK12906 secA preprotein trans 99.7 1.1E-16 2.3E-21 183.9 19.2 105 276-401 440-553 (796)
108 PF00270 DEAD: DEAD/DEAH box h 99.7 1.8E-16 4E-21 153.4 15.1 153 29-185 1-167 (169)
109 PRK12904 preprotein translocas 99.7 6.9E-16 1.5E-20 177.9 20.5 79 258-344 416-495 (830)
110 KOG0949 Predicted helicase, DE 99.6 2.7E-14 5.9E-19 160.8 25.5 163 26-191 510-684 (1330)
111 TIGR00348 hsdR type I site-spe 99.6 1.5E-14 3.3E-19 168.7 24.6 335 29-393 240-639 (667)
112 COG1198 PriA Primosomal protei 99.6 1.3E-14 2.8E-19 166.1 18.3 318 24-395 195-597 (730)
113 PRK13107 preprotein translocas 99.6 1.4E-14 3.1E-19 166.7 18.5 80 258-344 435-514 (908)
114 cd00268 DEADc DEAD-box helicas 99.6 1E-14 2.2E-19 146.0 14.9 152 28-181 22-186 (203)
115 PLN03142 Probable chromatin-re 99.6 9E-14 1.9E-18 165.4 24.5 108 276-403 487-601 (1033)
116 PRK12899 secA preprotein trans 99.6 4.9E-14 1.1E-18 162.5 21.5 121 26-148 89-226 (970)
117 KOG0953 Mitochondrial RNA heli 99.6 1.4E-14 3E-19 155.0 14.5 279 42-401 191-477 (700)
118 PF04408 HA2: Helicase associa 99.5 1.9E-14 4E-19 127.0 8.9 100 455-562 1-102 (102)
119 COG1110 Reverse gyrase [DNA re 99.5 1.8E-12 4E-17 147.9 23.6 270 26-358 81-419 (1187)
120 TIGR01407 dinG_rel DnaQ family 99.5 1.5E-11 3.2E-16 148.1 30.3 129 259-397 660-811 (850)
121 KOG1123 RNA polymerase II tran 99.5 1.6E-13 3.4E-18 144.9 10.7 315 27-401 302-653 (776)
122 cd00046 DEXDc DEAD-like helica 99.5 9.4E-13 2E-17 122.1 14.3 134 43-179 1-144 (144)
123 smart00487 DEXDc DEAD-like hel 99.4 1.8E-12 3.9E-17 127.9 15.8 155 25-180 6-171 (201)
124 smart00847 HA2 Helicase associ 99.4 8.5E-13 1.8E-17 114.4 8.3 82 455-543 1-83 (92)
125 cd00079 HELICc Helicase superf 99.4 1.8E-12 3.9E-17 119.5 10.8 101 276-396 28-130 (131)
126 TIGR00631 uvrb excinuclease AB 99.4 2.4E-12 5.2E-17 148.8 11.7 123 263-401 430-553 (655)
127 TIGR02562 cas3_yersinia CRISPR 99.4 1.6E-10 3.4E-15 134.9 26.2 250 114-391 563-881 (1110)
128 PF04851 ResIII: Type III rest 99.3 6.6E-12 1.4E-16 122.9 11.1 148 26-180 2-183 (184)
129 PF00271 Helicase_C: Helicase 99.3 1.1E-12 2.3E-17 110.0 4.4 71 301-389 6-77 (78)
130 PRK05298 excinuclease ABC subu 99.3 8.4E-12 1.8E-16 145.3 12.2 110 276-400 446-556 (652)
131 PRK12900 secA preprotein trans 99.3 9E-12 2E-16 144.4 11.0 106 276-403 598-713 (1025)
132 KOG4150 Predicted ATP-dependen 99.3 1.2E-10 2.5E-15 125.0 16.2 304 27-394 286-633 (1034)
133 PRK12326 preprotein translocas 99.2 2.6E-10 5.7E-15 129.0 19.6 117 258-400 413-546 (764)
134 KOG0385 Chromatin remodeling c 99.2 2.6E-09 5.6E-14 119.0 25.1 346 27-403 167-601 (971)
135 KOG0387 Transcription-coupled 99.2 4E-09 8.6E-14 118.1 26.1 126 258-403 532-660 (923)
136 PRK13103 secA preprotein trans 99.2 5.3E-10 1.1E-14 129.6 16.5 123 25-148 78-213 (913)
137 PF07652 Flavi_DEAD: Flaviviru 99.2 1.8E-10 4E-15 105.3 10.1 131 41-180 3-137 (148)
138 PF02399 Herpes_ori_bp: Origin 99.1 8.8E-09 1.9E-13 117.7 25.6 326 41-403 48-390 (824)
139 KOG0951 RNA helicase BRR2, DEA 99.1 8.4E-10 1.8E-14 128.0 17.2 329 29-412 1145-1508(1674)
140 PRK07246 bifunctional ATP-depe 99.1 1.2E-08 2.6E-13 121.7 27.4 126 258-397 633-780 (820)
141 smart00490 HELICc helicase sup 99.1 8.9E-11 1.9E-15 98.6 6.3 78 292-389 3-81 (82)
142 PRK08074 bifunctional ATP-depe 99.1 5.5E-08 1.2E-12 118.1 29.1 130 259-397 738-890 (928)
143 COG4889 Predicted helicase [Ge 99.0 2.9E-09 6.3E-14 119.4 15.1 82 296-395 491-578 (1518)
144 PRK12903 secA preprotein trans 99.0 8.1E-09 1.8E-13 118.7 18.8 114 260-399 414-537 (925)
145 CHL00122 secA preprotein trans 99.0 2.2E-09 4.8E-14 124.0 14.0 65 276-344 424-491 (870)
146 KOG0390 DNA repair protein, SN 98.9 2.1E-07 4.6E-12 106.9 25.6 106 280-401 598-707 (776)
147 KOG0384 Chromodomain-helicase 98.9 2.7E-08 5.9E-13 116.0 17.6 113 275-404 698-814 (1373)
148 PRK14873 primosome assembly pr 98.9 2.8E-08 6.1E-13 115.0 17.4 131 46-187 164-311 (665)
149 COG0556 UvrB Helicase subunit 98.9 4.4E-08 9.4E-13 105.7 16.1 121 263-399 434-555 (663)
150 PRK12902 secA preprotein trans 98.9 9.4E-08 2E-12 110.6 19.5 124 23-148 79-216 (939)
151 TIGR03117 cas_csf4 CRISPR-asso 98.8 5.6E-06 1.2E-10 95.1 30.7 75 276-354 470-559 (636)
152 KOG1000 Chromatin remodeling p 98.6 5.1E-06 1.1E-10 89.0 20.4 108 276-400 492-602 (689)
153 KOG0392 SNF2 family DNA-depend 98.6 9.9E-06 2.1E-10 95.0 24.2 112 276-403 1340-1456(1549)
154 KOG0389 SNF2 family DNA-depend 98.2 0.00028 6E-09 80.1 22.7 111 276-403 777-890 (941)
155 TIGR00596 rad1 DNA repair prot 98.2 2.1E-05 4.5E-10 93.0 14.6 79 112-191 6-89 (814)
156 PF00176 SNF2_N: SNF2 family N 98.1 2.2E-05 4.7E-10 83.1 12.8 136 41-188 24-181 (299)
157 COG0610 Type I site-specific r 98.1 7.8E-05 1.7E-09 90.6 17.2 129 43-179 274-413 (962)
158 PF13401 AAA_22: AAA domain; P 98.1 6.4E-06 1.4E-10 75.9 5.8 116 40-178 2-125 (131)
159 PF13604 AAA_30: AAA domain; P 98.0 2.4E-05 5.3E-10 77.7 8.2 120 28-178 2-130 (196)
160 PRK12723 flagellar biosynthesi 97.9 0.0001 2.2E-09 80.3 13.1 126 42-191 174-309 (388)
161 PF00448 SRP54: SRP54-type pro 97.9 3.6E-05 7.8E-10 76.3 8.4 124 43-185 2-131 (196)
162 PRK12901 secA preprotein trans 97.8 5.3E-05 1.1E-09 89.3 9.2 116 258-399 614-739 (1112)
163 KOG1002 Nucleotide excision re 97.8 0.0063 1.4E-07 65.9 23.4 108 277-401 639-749 (791)
164 COG1419 FlhF Flagellar GTP-bin 97.8 0.00026 5.7E-09 76.0 13.2 126 42-191 203-335 (407)
165 KOG0386 Chromatin remodeling c 97.8 0.0002 4.4E-09 83.0 12.7 119 265-403 715-840 (1157)
166 PF02562 PhoH: PhoH-like prote 97.8 5.5E-05 1.2E-09 74.9 6.9 50 27-76 4-57 (205)
167 PRK10875 recD exonuclease V su 97.8 0.00013 2.9E-09 84.1 11.2 136 29-178 154-301 (615)
168 smart00489 DEXDc3 DEAD-like he 97.7 0.00015 3.3E-09 76.4 10.2 34 29-62 10-47 (289)
169 smart00488 DEXDc2 DEAD-like he 97.7 0.00015 3.3E-09 76.4 10.2 34 29-62 10-47 (289)
170 TIGR01447 recD exodeoxyribonuc 97.7 0.00023 5E-09 82.0 11.9 135 30-178 148-295 (586)
171 PRK10536 hypothetical protein; 97.6 0.00016 3.5E-09 73.6 8.0 52 26-77 58-113 (262)
172 PRK14722 flhF flagellar biosyn 97.6 0.00031 6.6E-09 76.1 10.6 122 41-186 136-264 (374)
173 PF13245 AAA_19: Part of AAA d 97.6 0.00015 3.3E-09 60.0 6.3 51 38-88 6-62 (76)
174 TIGR01448 recD_rel helicase, p 97.6 0.00031 6.7E-09 83.2 11.2 123 25-178 321-452 (720)
175 PRK11889 flhF flagellar biosyn 97.5 0.00091 2E-08 72.1 12.8 125 43-188 242-371 (436)
176 COG0653 SecA Preprotein transl 97.5 0.0022 4.9E-08 74.8 15.9 97 276-394 429-538 (822)
177 TIGR02768 TraA_Ti Ti-type conj 97.5 0.001 2.2E-08 79.2 13.5 124 25-178 350-476 (744)
178 cd00009 AAA The AAA+ (ATPases 97.5 0.0015 3.2E-08 60.5 12.1 34 32-65 7-42 (151)
179 KOG0391 SNF2 family DNA-depend 97.5 0.00055 1.2E-08 80.3 10.7 111 276-403 1276-1389(1958)
180 PRK11747 dinG ATP-dependent DN 97.5 0.0023 4.9E-08 75.9 16.1 127 258-397 520-671 (697)
181 PF06862 DUF1253: Protein of u 97.4 0.018 3.9E-07 63.5 21.2 114 276-406 300-420 (442)
182 PRK06526 transposase; Provisio 97.4 0.00038 8.1E-09 71.9 7.9 26 37-62 93-118 (254)
183 PF09848 DUF2075: Uncharacteri 97.4 0.00055 1.2E-08 74.5 9.3 92 43-152 2-97 (352)
184 PRK05703 flhF flagellar biosyn 97.4 0.0023 5E-08 71.1 14.2 125 42-190 221-353 (424)
185 COG1199 DinG Rad3-related DNA 97.4 0.0025 5.5E-08 75.4 14.9 134 257-397 463-614 (654)
186 smart00382 AAA ATPases associa 97.3 0.00076 1.6E-08 61.8 7.5 35 42-76 2-38 (148)
187 PRK14974 cell division protein 97.2 0.0035 7.5E-08 67.2 12.7 128 43-189 141-276 (336)
188 PRK08181 transposase; Validate 97.2 0.0028 6E-08 65.9 11.6 25 38-62 102-126 (269)
189 PF13872 AAA_34: P-loop contai 97.2 0.0065 1.4E-07 63.2 13.9 149 28-179 38-220 (303)
190 PRK15483 type III restriction- 97.2 0.002 4.3E-08 76.8 11.0 134 43-181 60-240 (986)
191 PRK04296 thymidine kinase; Pro 97.2 0.0032 6.9E-08 62.2 11.0 35 42-76 2-38 (190)
192 PRK12724 flagellar biosynthesi 97.2 0.0033 7.1E-08 68.7 11.8 123 42-189 223-354 (432)
193 PRK12727 flagellar biosynthesi 97.1 0.0032 6.9E-08 70.6 11.4 126 40-189 348-479 (559)
194 PRK13889 conjugal transfer rel 97.1 0.0029 6.3E-08 76.6 12.0 124 25-178 344-470 (988)
195 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.0031 6.8E-08 65.1 10.3 119 27-148 77-208 (266)
196 PRK12726 flagellar biosynthesi 97.1 0.0038 8.2E-08 67.2 11.0 129 41-190 205-338 (407)
197 PF13086 AAA_11: AAA domain; P 97.0 0.0018 3.8E-08 65.6 7.7 63 28-90 2-75 (236)
198 KOG0952 DNA/RNA helicase MER3/ 97.0 0.00016 3.4E-09 84.3 -0.0 166 24-190 909-1105(1230)
199 PRK14723 flhF flagellar biosyn 97.0 0.0073 1.6E-07 70.8 13.4 123 42-188 185-314 (767)
200 PF05970 PIF1: PIF1-like helic 96.9 0.0036 7.9E-08 68.4 9.9 57 28-84 2-66 (364)
201 PRK14721 flhF flagellar biosyn 96.9 0.0093 2E-07 65.7 12.7 126 41-190 190-322 (420)
202 PRK06835 DNA replication prote 96.9 0.0083 1.8E-07 64.3 11.5 53 136-189 245-298 (329)
203 KOG2340 Uncharacterized conser 96.8 0.011 2.4E-07 64.7 12.0 111 276-403 552-670 (698)
204 PF13173 AAA_14: AAA domain 96.8 0.0059 1.3E-07 56.1 8.7 26 41-66 1-26 (128)
205 PF13307 Helicase_C_2: Helicas 96.8 0.0012 2.6E-08 63.8 3.9 117 276-397 9-147 (167)
206 PRK07003 DNA polymerase III su 96.7 0.0069 1.5E-07 70.3 10.3 39 136-176 118-156 (830)
207 PRK13826 Dtr system oriT relax 96.7 0.0097 2.1E-07 72.6 11.7 124 25-178 379-505 (1102)
208 PRK08727 hypothetical protein; 96.7 0.0065 1.4E-07 62.1 8.7 20 43-62 42-61 (233)
209 PRK06731 flhF flagellar biosyn 96.6 0.024 5.2E-07 59.0 12.4 127 42-189 75-206 (270)
210 TIGR02640 gas_vesic_GvpN gas v 96.6 0.0091 2E-07 62.2 9.2 41 28-68 7-47 (262)
211 PF05127 Helicase_RecD: Helica 96.6 0.0012 2.6E-08 63.8 2.2 113 46-179 1-123 (177)
212 TIGR00604 rad3 DNA repair heli 96.5 0.03 6.5E-07 66.8 14.4 94 258-356 507-615 (705)
213 PF05729 NACHT: NACHT domain 96.5 0.011 2.5E-07 56.2 8.9 51 139-189 83-140 (166)
214 PRK06893 DNA replication initi 96.5 0.011 2.3E-07 60.3 8.9 48 136-185 90-140 (229)
215 PRK14956 DNA polymerase III su 96.5 0.017 3.6E-07 64.5 10.9 39 136-178 120-158 (484)
216 PRK05642 DNA replication initi 96.5 0.011 2.4E-07 60.4 9.0 19 43-61 46-64 (234)
217 PRK10416 signal recognition pa 96.5 0.032 6.9E-07 59.6 12.7 126 42-185 114-250 (318)
218 PRK08116 hypothetical protein; 96.4 0.037 7.9E-07 57.8 12.6 20 43-62 115-134 (268)
219 KOG0388 SNF2 family DNA-depend 96.4 0.016 3.5E-07 65.3 10.2 112 275-403 1043-1156(1185)
220 PF01695 IstB_IS21: IstB-like 96.4 0.0079 1.7E-07 58.7 7.1 35 39-73 44-81 (178)
221 PRK06995 flhF flagellar biosyn 96.4 0.032 6.9E-07 62.6 12.6 124 42-189 256-386 (484)
222 COG1875 NYN ribonuclease and A 96.3 0.014 3.1E-07 61.5 8.7 133 23-177 224-386 (436)
223 PRK14964 DNA polymerase III su 96.3 0.021 4.5E-07 64.3 10.6 39 136-176 115-153 (491)
224 PRK14949 DNA polymerase III su 96.3 0.014 2.9E-07 69.3 9.4 38 136-175 118-155 (944)
225 PRK08084 DNA replication initi 96.3 0.024 5.2E-07 58.0 10.2 20 43-62 46-65 (235)
226 TIGR02782 TrbB_P P-type conjug 96.3 0.029 6.3E-07 59.5 11.0 89 32-147 121-214 (299)
227 PRK12323 DNA polymerase III su 96.3 0.025 5.4E-07 65.0 10.9 40 136-177 123-162 (700)
228 PRK00771 signal recognition pa 96.3 0.027 5.8E-07 62.7 11.0 118 43-181 96-219 (437)
229 PRK00411 cdc6 cell division co 96.3 0.045 9.8E-07 60.5 13.0 23 43-65 56-78 (394)
230 PRK14958 DNA polymerase III su 96.3 0.023 5.1E-07 64.6 10.7 39 136-176 118-156 (509)
231 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.02 4.4E-07 57.9 9.2 23 41-63 37-59 (226)
232 PRK07994 DNA polymerase III su 96.2 0.012 2.7E-07 68.2 8.3 38 136-175 118-155 (647)
233 PRK07952 DNA replication prote 96.2 0.056 1.2E-06 55.4 12.3 53 136-189 161-214 (244)
234 TIGR02881 spore_V_K stage V sp 96.2 0.018 4E-07 59.9 8.8 20 43-62 43-62 (261)
235 PRK13894 conjugal transfer ATP 96.2 0.027 5.8E-07 60.2 9.9 35 30-64 135-170 (319)
236 COG2804 PulE Type II secretory 96.2 0.013 2.7E-07 64.9 7.5 96 23-147 237-337 (500)
237 COG1444 Predicted P-loop ATPas 96.1 0.019 4E-07 66.9 9.1 135 25-179 209-356 (758)
238 PRK14960 DNA polymerase III su 96.1 0.027 6E-07 64.8 10.2 39 136-176 117-155 (702)
239 PRK09112 DNA polymerase III su 96.1 0.03 6.5E-07 60.7 10.1 39 136-176 140-178 (351)
240 TIGR03015 pepcterm_ATPase puta 96.1 0.02 4.3E-07 59.7 8.6 25 43-67 44-68 (269)
241 TIGR03499 FlhF flagellar biosy 96.1 0.021 4.5E-07 60.2 8.5 82 42-146 194-281 (282)
242 KOG1802 RNA helicase nonsense 96.1 0.013 2.8E-07 65.8 7.0 63 28-90 411-476 (935)
243 PRK14961 DNA polymerase III su 96.1 0.042 9.1E-07 60.1 11.1 39 136-176 118-156 (363)
244 TIGR00376 DNA helicase, putati 96.0 0.026 5.5E-07 66.2 9.9 65 26-90 156-223 (637)
245 KOG0989 Replication factor C, 96.0 0.019 4.1E-07 59.3 7.6 42 135-178 127-168 (346)
246 PRK09183 transposase/IS protei 96.0 0.039 8.5E-07 57.3 10.2 25 39-63 99-123 (259)
247 TIGR02760 TraI_TIGR conjugativ 96.0 0.05 1.1E-06 71.3 13.2 136 25-178 427-566 (1960)
248 PTZ00112 origin recognition co 96.0 0.068 1.5E-06 63.0 12.8 40 24-63 755-802 (1164)
249 TIGR00064 ftsY signal recognit 96.0 0.066 1.4E-06 56.0 11.8 124 43-185 73-208 (272)
250 PF05496 RuvB_N: Holliday junc 96.0 0.014 3E-07 58.3 6.3 17 43-59 51-67 (233)
251 PF00004 AAA: ATPase family as 96.0 0.036 7.7E-07 50.6 8.8 20 45-64 1-20 (132)
252 COG1219 ClpX ATP-dependent pro 96.0 0.011 2.5E-07 61.1 5.6 27 122-148 145-173 (408)
253 PRK06921 hypothetical protein; 95.9 0.052 1.1E-06 56.6 10.5 22 41-62 116-137 (266)
254 PRK14957 DNA polymerase III su 95.9 0.048 1E-06 62.3 11.0 39 136-176 118-156 (546)
255 PRK07764 DNA polymerase III su 95.9 0.035 7.5E-07 66.6 10.2 39 136-176 119-157 (824)
256 PF00580 UvrD-helicase: UvrD/R 95.9 0.017 3.7E-07 61.4 6.9 117 28-147 1-125 (315)
257 PRK09111 DNA polymerase III su 95.8 0.054 1.2E-06 62.8 11.2 40 135-176 130-169 (598)
258 PRK06645 DNA polymerase III su 95.8 0.038 8.2E-07 62.7 9.5 26 39-64 37-65 (507)
259 PRK14969 DNA polymerase III su 95.8 0.058 1.3E-06 61.8 11.2 39 136-176 118-156 (527)
260 PHA00729 NTP-binding motif con 95.8 0.028 6E-07 56.6 7.5 27 35-61 8-36 (226)
261 PRK13833 conjugal transfer pro 95.8 0.047 1E-06 58.2 9.6 47 29-75 130-181 (323)
262 PRK12402 replication factor C 95.8 0.071 1.5E-06 57.5 11.3 35 31-65 23-59 (337)
263 PHA03333 putative ATPase subun 95.8 0.16 3.4E-06 58.6 14.1 140 41-191 186-344 (752)
264 PRK08691 DNA polymerase III su 95.8 0.029 6.4E-07 65.1 8.5 39 136-176 118-156 (709)
265 PHA02244 ATPase-like protein 95.7 0.11 2.4E-06 56.0 12.1 43 26-68 102-145 (383)
266 PF05621 TniB: Bacterial TniB 95.7 0.075 1.6E-06 55.5 10.5 67 29-95 39-123 (302)
267 PRK14086 dnaA chromosomal repl 95.7 0.14 3.1E-06 58.8 13.5 20 43-62 315-334 (617)
268 PRK08903 DnaA regulatory inact 95.7 0.052 1.1E-06 55.1 9.2 22 42-63 42-63 (227)
269 PRK09087 hypothetical protein; 95.7 0.096 2.1E-06 53.2 11.1 20 42-61 44-63 (226)
270 PF12340 DUF3638: Protein of u 95.6 0.056 1.2E-06 54.3 9.0 102 24-127 20-144 (229)
271 TIGR02928 orc1/cdc6 family rep 95.6 0.058 1.3E-06 59.0 10.1 24 445-468 326-349 (365)
272 cd01120 RecA-like_NTPases RecA 95.6 0.062 1.3E-06 50.7 8.8 23 44-66 1-23 (165)
273 CHL00181 cbbX CbbX; Provisiona 95.5 0.06 1.3E-06 56.8 9.1 20 43-62 60-79 (287)
274 PRK14088 dnaA chromosomal repl 95.5 0.15 3.3E-06 57.1 12.9 18 43-60 131-148 (440)
275 PRK12422 chromosomal replicati 95.4 0.074 1.6E-06 59.6 10.1 20 43-62 142-161 (445)
276 PRK04841 transcriptional regul 95.4 0.079 1.7E-06 65.3 11.4 127 39-179 29-162 (903)
277 TIGR01650 PD_CobS cobaltochela 95.4 0.27 5.9E-06 52.3 13.6 38 32-69 54-91 (327)
278 TIGR00362 DnaA chromosomal rep 95.4 0.056 1.2E-06 60.1 9.0 20 43-62 137-156 (405)
279 PRK14952 DNA polymerase III su 95.4 0.068 1.5E-06 61.6 9.7 39 136-176 117-155 (584)
280 PRK14962 DNA polymerase III su 95.3 0.12 2.5E-06 58.4 11.1 27 38-64 29-58 (472)
281 PRK14087 dnaA chromosomal repl 95.3 0.079 1.7E-06 59.5 9.7 20 43-62 142-161 (450)
282 PRK11331 5-methylcytosine-spec 95.3 0.058 1.3E-06 59.6 8.3 34 30-63 182-215 (459)
283 PRK14951 DNA polymerase III su 95.3 0.068 1.5E-06 61.9 9.3 39 136-176 123-161 (618)
284 KOG1803 DNA helicase [Replicat 95.3 0.023 5.1E-07 63.5 5.2 62 28-89 186-250 (649)
285 PLN03025 replication factor C 95.2 0.13 2.8E-06 55.2 10.9 21 43-63 35-55 (319)
286 PRK12377 putative replication 95.2 0.33 7.1E-06 50.0 13.1 33 42-74 101-136 (248)
287 KOG2228 Origin recognition com 95.2 0.39 8.5E-06 50.5 13.4 126 41-181 48-183 (408)
288 PF13177 DNA_pol3_delta2: DNA 95.2 0.043 9.3E-07 52.7 6.2 42 136-179 101-142 (162)
289 TIGR01425 SRP54_euk signal rec 95.1 0.26 5.7E-06 54.5 12.9 128 43-189 101-236 (429)
290 TIGR02788 VirB11 P-type DNA tr 95.1 0.11 2.5E-06 55.3 9.9 25 39-63 141-165 (308)
291 PRK07133 DNA polymerase III su 95.1 0.14 3E-06 60.1 11.2 39 136-176 117-155 (725)
292 PRK14955 DNA polymerase III su 95.1 0.096 2.1E-06 58.0 9.6 26 37-62 30-58 (397)
293 KOG0741 AAA+-type ATPase [Post 95.1 0.13 2.9E-06 56.7 10.2 104 44-183 540-653 (744)
294 PRK08939 primosomal protein Dn 95.0 0.37 7.9E-06 51.3 13.4 110 42-189 156-270 (306)
295 PRK10867 signal recognition pa 95.0 0.12 2.7E-06 57.4 10.1 119 43-179 101-225 (433)
296 PF00308 Bac_DnaA: Bacterial d 95.0 0.088 1.9E-06 53.2 8.3 41 136-178 96-139 (219)
297 COG1484 DnaC DNA replication p 95.0 0.28 6.1E-06 50.7 12.0 42 35-76 98-142 (254)
298 PRK14959 DNA polymerase III su 94.9 0.17 3.8E-06 58.4 11.2 28 36-63 29-59 (624)
299 PF01637 Arch_ATPase: Archaeal 94.9 0.068 1.5E-06 53.9 7.2 34 33-66 9-44 (234)
300 cd03115 SRP The signal recogni 94.8 0.21 4.4E-06 48.3 10.1 120 44-182 2-127 (173)
301 COG0553 HepA Superfamily II DN 94.8 0.084 1.8E-06 64.7 9.1 109 278-403 713-824 (866)
302 TIGR02880 cbbX_cfxQ probable R 94.8 0.11 2.3E-06 54.9 8.5 17 43-59 59-75 (284)
303 COG2909 MalT ATP-dependent tra 94.8 0.3 6.5E-06 57.3 12.5 135 31-178 23-169 (894)
304 PRK00149 dnaA chromosomal repl 94.8 0.25 5.3E-06 55.8 11.9 20 43-62 149-168 (450)
305 PHA02544 44 clamp loader, smal 94.8 0.21 4.6E-06 53.4 10.9 32 32-63 30-64 (316)
306 TIGR00678 holB DNA polymerase 94.7 0.22 4.8E-06 48.9 10.2 29 34-62 3-34 (188)
307 PRK14950 DNA polymerase III su 94.7 0.086 1.9E-06 61.4 8.3 29 35-63 28-59 (585)
308 PRK08451 DNA polymerase III su 94.7 0.21 4.6E-06 56.8 11.1 39 136-176 116-154 (535)
309 PRK05896 DNA polymerase III su 94.7 0.12 2.6E-06 59.4 9.0 28 35-62 28-58 (605)
310 PHA02533 17 large terminase pr 94.7 0.74 1.6E-05 52.8 15.4 157 25-189 57-220 (534)
311 PRK14965 DNA polymerase III su 94.6 0.12 2.5E-06 60.1 9.1 39 136-176 118-156 (576)
312 TIGR03345 VI_ClpV1 type VI sec 94.6 0.2 4.3E-06 60.9 11.3 116 44-188 598-727 (852)
313 PRK10436 hypothetical protein; 94.6 0.11 2.4E-06 58.3 8.6 42 24-65 198-241 (462)
314 PRK14712 conjugal transfer nic 94.6 0.22 4.9E-06 63.1 11.8 121 27-178 835-967 (1623)
315 PF00437 T2SE: Type II/IV secr 94.5 0.044 9.4E-07 57.3 4.8 37 39-75 124-162 (270)
316 KOG1805 DNA replication helica 94.5 0.084 1.8E-06 62.1 7.3 119 26-148 668-807 (1100)
317 PRK14953 DNA polymerase III su 94.5 0.27 5.8E-06 55.8 11.3 38 135-174 117-154 (486)
318 COG2256 MGS1 ATPase related to 94.5 0.11 2.3E-06 55.9 7.5 35 137-179 104-140 (436)
319 TIGR00959 ffh signal recogniti 94.4 0.31 6.8E-06 54.2 11.4 119 43-180 100-225 (428)
320 PRK07471 DNA polymerase III su 94.4 0.61 1.3E-05 50.9 13.5 42 136-179 140-181 (365)
321 PRK05563 DNA polymerase III su 94.4 0.12 2.5E-06 59.8 8.2 20 43-62 39-58 (559)
322 PRK14948 DNA polymerase III su 94.3 0.14 3E-06 59.8 8.7 29 35-63 28-59 (620)
323 cd01130 VirB11-like_ATPase Typ 94.3 0.056 1.2E-06 53.1 4.8 34 30-63 12-46 (186)
324 TIGR02533 type_II_gspE general 94.3 0.11 2.3E-06 59.0 7.6 41 24-64 222-264 (486)
325 PRK13900 type IV secretion sys 94.2 0.091 2E-06 56.5 6.5 37 38-74 156-193 (332)
326 PRK04195 replication factor C 94.2 0.37 7.9E-06 54.9 11.6 26 42-67 39-64 (482)
327 PRK14963 DNA polymerase III su 94.2 0.37 8.1E-06 54.9 11.6 38 136-175 115-152 (504)
328 PRK00440 rfc replication facto 94.1 0.5 1.1E-05 50.4 12.1 20 44-63 40-59 (319)
329 PRK13709 conjugal transfer nic 94.1 0.35 7.5E-06 62.3 12.2 122 26-178 966-1099(1747)
330 PRK13851 type IV secretion sys 94.1 0.08 1.7E-06 57.1 5.6 39 38-76 158-197 (344)
331 COG0470 HolB ATPase involved i 94.0 0.19 4.2E-06 53.7 8.7 40 136-177 108-147 (325)
332 TIGR03819 heli_sec_ATPase heli 94.0 0.35 7.6E-06 52.2 10.5 34 30-63 165-199 (340)
333 PRK06620 hypothetical protein; 94.0 0.17 3.6E-06 51.0 7.5 19 43-61 45-63 (214)
334 PF01443 Viral_helicase1: Vira 94.0 0.044 9.6E-07 55.7 3.5 22 45-66 1-22 (234)
335 COG2255 RuvB Holliday junction 94.0 0.088 1.9E-06 54.0 5.4 62 43-148 53-114 (332)
336 COG0552 FtsY Signal recognitio 94.0 1.5 3.2E-05 46.5 14.5 131 43-191 140-283 (340)
337 TIGR02538 type_IV_pilB type IV 94.0 0.12 2.7E-06 59.8 7.4 41 24-64 296-338 (564)
338 PF03266 NTPase_1: NTPase; In 93.9 0.22 4.8E-06 48.0 7.9 22 44-65 1-22 (168)
339 PTZ00293 thymidine kinase; Pro 93.9 0.11 2.3E-06 51.9 5.7 36 41-76 3-40 (211)
340 COG1702 PhoH Phosphate starvat 93.9 0.14 3E-06 54.1 6.7 51 26-76 127-181 (348)
341 TIGR02760 TraI_TIGR conjugativ 93.8 0.2 4.4E-06 65.8 9.7 122 26-178 1018-1149(1960)
342 PRK05707 DNA polymerase III su 93.8 0.2 4.3E-06 53.9 8.1 36 27-62 3-42 (328)
343 cd00267 ABC_ATPase ABC (ATP-bi 93.8 0.14 3E-06 48.7 6.2 25 39-63 22-46 (157)
344 KOG1132 Helicase of the DEAD s 93.8 0.14 2.9E-06 59.9 7.0 38 110-147 219-257 (945)
345 PRK14954 DNA polymerase III su 93.8 0.26 5.6E-06 57.4 9.5 30 609-638 549-578 (620)
346 COG1474 CDC6 Cdc6-related prot 93.7 0.72 1.6E-05 50.3 12.3 39 24-62 17-62 (366)
347 COG4962 CpaF Flp pilus assembl 93.7 0.13 2.7E-06 54.5 6.0 48 29-76 159-208 (355)
348 PF13555 AAA_29: P-loop contai 93.6 0.074 1.6E-06 41.9 3.3 21 42-62 23-43 (62)
349 PRK14970 DNA polymerase III su 93.6 0.31 6.7E-06 53.4 9.4 29 34-62 28-59 (367)
350 COG3587 Restriction endonuclea 93.5 0.23 5E-06 57.9 8.2 56 323-396 479-537 (985)
351 CHL00176 ftsH cell division pr 93.5 0.43 9.4E-06 55.9 10.7 24 43-66 217-240 (638)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.5 0.32 6.8E-06 45.6 7.9 90 39-164 23-114 (144)
353 TIGR00604 rad3 DNA repair heli 93.4 0.17 3.8E-06 60.4 7.4 36 27-62 10-49 (705)
354 PRK07940 DNA polymerase III su 93.3 0.26 5.7E-06 54.3 8.2 40 136-178 116-155 (394)
355 cd03228 ABCC_MRP_Like The MRP 93.3 0.4 8.6E-06 46.3 8.6 123 39-176 25-152 (171)
356 TIGR02397 dnaX_nterm DNA polym 93.3 0.55 1.2E-05 51.0 10.8 28 35-62 26-56 (355)
357 PRK12900 secA preprotein trans 93.3 0.1 2.2E-06 62.5 5.1 119 25-147 136-268 (1025)
358 COG2805 PilT Tfp pilus assembl 93.3 0.092 2E-06 54.3 4.1 24 41-64 124-147 (353)
359 cd01129 PulE-GspE PulE/GspE Th 93.3 0.099 2.2E-06 54.4 4.6 41 25-65 61-103 (264)
360 cd03247 ABCC_cytochrome_bd The 93.2 0.59 1.3E-05 45.4 9.8 125 39-177 25-155 (178)
361 PRK13342 recombination factor 93.2 0.35 7.5E-06 53.9 9.1 21 43-63 37-57 (413)
362 TIGR02688 conserved hypothetic 93.2 0.18 3.9E-06 55.3 6.5 23 37-59 204-226 (449)
363 PRK05342 clpX ATP-dependent pr 93.2 0.22 4.8E-06 55.1 7.4 20 43-62 109-128 (412)
364 PRK00080 ruvB Holliday junctio 93.1 0.29 6.2E-06 52.8 8.1 31 451-483 291-322 (328)
365 COG2812 DnaX DNA polymerase II 93.1 0.2 4.3E-06 56.6 6.9 37 136-174 118-154 (515)
366 TIGR02524 dot_icm_DotB Dot/Icm 93.0 0.1 2.2E-06 56.7 4.4 29 35-63 126-155 (358)
367 PF00931 NB-ARC: NB-ARC domain 93.0 0.18 3.9E-06 52.9 6.1 33 33-65 6-42 (287)
368 KOG0737 AAA+-type ATPase [Post 92.9 0.11 2.5E-06 55.1 4.3 103 42-180 127-240 (386)
369 PRK10865 protein disaggregatio 92.9 0.82 1.8E-05 55.7 12.3 18 44-61 600-617 (857)
370 COG0541 Ffh Signal recognition 92.9 2.3 5E-05 46.5 14.2 131 43-190 101-237 (451)
371 PLN00020 ribulose bisphosphate 92.9 0.17 3.8E-06 54.3 5.7 29 43-71 149-177 (413)
372 PRK06647 DNA polymerase III su 92.9 0.4 8.8E-06 55.3 9.1 30 34-63 27-59 (563)
373 TIGR02785 addA_Gpos recombinat 92.8 0.17 3.6E-06 64.2 6.5 133 29-164 3-142 (1232)
374 TIGR02868 CydC thiol reductant 92.8 0.58 1.3E-05 54.0 10.5 24 40-63 359-382 (529)
375 TIGR02858 spore_III_AA stage I 92.7 0.97 2.1E-05 47.1 10.9 33 32-64 98-133 (270)
376 KOG0733 Nuclear AAA ATPase (VC 92.6 0.42 9E-06 54.0 8.3 46 16-61 503-564 (802)
377 PRK14971 DNA polymerase III su 92.6 0.81 1.8E-05 53.5 11.3 26 34-59 28-56 (614)
378 PHA03368 DNA packaging termina 92.6 1.7 3.6E-05 50.3 13.2 138 42-191 254-402 (738)
379 PRK11034 clpA ATP-dependent Cl 92.5 0.38 8.3E-06 57.4 8.5 19 44-62 490-508 (758)
380 cd03216 ABC_Carb_Monos_I This 92.5 0.34 7.4E-06 46.4 6.7 102 39-164 23-126 (163)
381 PRK11747 dinG ATP-dependent DN 92.4 0.25 5.4E-06 58.8 7.0 59 26-84 24-94 (697)
382 PRK08769 DNA polymerase III su 92.4 0.55 1.2E-05 50.2 8.8 41 136-178 112-152 (319)
383 TIGR01241 FtsH_fam ATP-depende 92.4 0.82 1.8E-05 52.3 11.0 24 43-66 89-112 (495)
384 TIGR03689 pup_AAA proteasome A 92.4 0.3 6.4E-06 55.4 7.1 17 43-59 217-233 (512)
385 KOG0391 SNF2 family DNA-depend 92.4 0.6 1.3E-05 56.1 9.6 143 28-178 616-774 (1958)
386 PRK07399 DNA polymerase III su 92.4 1.3 2.7E-05 47.5 11.6 52 123-178 111-162 (314)
387 KOG2036 Predicted P-loop ATPas 92.4 5.2 0.00011 46.0 16.4 120 43-180 276-412 (1011)
388 TIGR00635 ruvB Holliday juncti 92.3 0.38 8.2E-06 51.1 7.6 30 452-483 271-301 (305)
389 COG3267 ExeA Type II secretory 92.2 1.1 2.5E-05 45.5 10.1 56 36-92 44-103 (269)
390 KOG1015 Transcription regulato 92.2 0.42 9.1E-06 56.2 7.9 122 265-401 1131-1277(1567)
391 cd03239 ABC_SMC_head The struc 92.2 0.63 1.4E-05 45.4 8.3 42 136-178 115-157 (178)
392 TIGR02639 ClpA ATP-dependent C 92.2 0.54 1.2E-05 56.4 9.4 19 44-62 486-504 (731)
393 cd03281 ABC_MSH5_euk MutS5 hom 92.1 0.32 6.9E-06 48.9 6.3 21 43-63 30-50 (213)
394 cd03222 ABC_RNaseL_inhibitor T 92.1 0.46 9.9E-06 46.3 7.2 92 38-163 21-114 (177)
395 KOG0745 Putative ATP-dependent 92.1 0.21 4.6E-06 54.0 5.1 16 42-57 226-241 (564)
396 TIGR01243 CDC48 AAA family ATP 92.0 0.67 1.5E-05 55.7 10.0 25 43-67 488-512 (733)
397 COG1126 GlnQ ABC-type polar am 92.0 0.086 1.9E-06 52.1 1.9 24 39-62 25-48 (240)
398 PRK13341 recombination factor 92.0 0.42 9.2E-06 56.7 8.0 21 43-63 53-73 (725)
399 cd01131 PilT Pilus retraction 92.0 0.12 2.5E-06 51.5 2.9 20 44-63 3-22 (198)
400 cd00544 CobU Adenosylcobinamid 91.9 0.58 1.3E-05 45.2 7.6 45 45-90 2-46 (169)
401 cd01121 Sms Sms (bacterial rad 91.8 0.49 1.1E-05 51.7 7.8 35 41-75 81-117 (372)
402 PRK11823 DNA repair protein Ra 91.7 0.34 7.4E-06 54.4 6.6 36 41-76 79-116 (446)
403 PRK08699 DNA polymerase III su 91.7 0.95 2.1E-05 48.6 9.7 38 136-175 112-149 (325)
404 cd03230 ABC_DR_subfamily_A Thi 91.7 0.46 1E-05 46.0 6.7 125 39-176 23-152 (173)
405 COG0556 UvrB Helicase subunit 91.6 0.4 8.7E-06 53.2 6.7 72 32-107 17-93 (663)
406 COG5008 PilU Tfp pilus assembl 91.6 0.2 4.3E-06 50.8 4.0 28 39-66 124-151 (375)
407 PRK06305 DNA polymerase III su 91.6 0.8 1.7E-05 51.5 9.4 30 34-63 28-60 (451)
408 KOG0991 Replication factor C, 91.5 0.32 6.9E-06 48.5 5.3 20 43-62 49-68 (333)
409 TIGR01243 CDC48 AAA family ATP 91.4 0.68 1.5E-05 55.7 9.2 23 42-64 212-234 (733)
410 KOG2543 Origin recognition com 91.4 1.5 3.3E-05 47.0 10.5 49 24-72 6-60 (438)
411 PRK03992 proteasome-activating 91.4 1 2.2E-05 49.8 9.8 23 43-65 166-188 (389)
412 COG1199 DinG Rad3-related DNA 91.3 0.44 9.6E-06 56.5 7.4 41 24-64 12-56 (654)
413 PTZ00454 26S protease regulato 91.3 1 2.3E-05 49.7 9.7 24 42-65 179-202 (398)
414 COG0593 DnaA ATPase involved i 91.3 1.6 3.5E-05 47.9 10.9 27 33-59 99-130 (408)
415 cd03246 ABCC_Protease_Secretio 91.3 0.56 1.2E-05 45.4 6.8 125 39-178 25-155 (173)
416 PRK06067 flagellar accessory p 91.2 0.7 1.5E-05 47.1 7.9 26 41-66 24-49 (234)
417 PF03354 Terminase_1: Phage Te 91.2 0.46 1E-05 54.0 7.1 144 30-179 1-164 (477)
418 TIGR02639 ClpA ATP-dependent C 91.2 1.2 2.5E-05 53.6 10.8 18 42-59 203-220 (731)
419 PRK10787 DNA-binding ATP-depen 91.1 0.53 1.1E-05 56.6 7.7 37 26-62 325-369 (784)
420 PRK06964 DNA polymerase III su 91.1 1.1 2.3E-05 48.5 9.3 52 124-178 120-171 (342)
421 cd01393 recA_like RecA is a b 91.1 0.41 8.8E-06 48.4 5.9 25 41-65 18-42 (226)
422 COG1618 Predicted nucleotide k 91.1 1.7 3.7E-05 41.1 9.3 20 44-63 7-26 (179)
423 PRK06871 DNA polymerase III su 91.0 1.1 2.5E-05 47.9 9.4 41 136-178 106-146 (325)
424 cd03214 ABC_Iron-Siderophores_ 91.0 0.36 7.9E-06 47.0 5.3 25 39-63 22-46 (180)
425 COG0466 Lon ATP-dependent Lon 90.9 0.68 1.5E-05 53.5 7.8 109 25-163 325-445 (782)
426 cd03243 ABC_MutS_homologs The 90.8 0.53 1.1E-05 46.8 6.4 23 41-63 28-50 (202)
427 TIGR02525 plasmid_TraJ plasmid 90.8 0.21 4.7E-06 54.4 3.7 24 40-63 147-170 (372)
428 KOG2004 Mitochondrial ATP-depe 90.8 0.77 1.7E-05 52.9 8.1 109 26-163 414-533 (906)
429 PLN02165 adenylate isopentenyl 90.8 0.16 3.5E-06 54.1 2.7 22 40-61 41-62 (334)
430 cd03229 ABC_Class3 This class 90.7 1 2.2E-05 43.8 8.1 115 39-164 23-144 (178)
431 PF02367 UPF0079: Uncharacteri 90.7 0.32 6.9E-06 44.2 4.2 38 32-69 5-42 (123)
432 PF13207 AAA_17: AAA domain; P 90.7 0.19 4.2E-06 45.1 2.8 19 44-62 1-19 (121)
433 cd01123 Rad51_DMC1_radA Rad51_ 90.6 0.46 9.9E-06 48.3 5.9 25 41-65 18-42 (235)
434 PRK11054 helD DNA helicase IV; 90.6 0.66 1.4E-05 54.9 7.8 102 25-147 194-302 (684)
435 COG1136 SalX ABC-type antimicr 90.6 0.14 3.1E-06 51.4 1.9 24 39-62 28-51 (226)
436 cd03215 ABC_Carb_Monos_II This 90.6 0.86 1.9E-05 44.5 7.5 24 40-63 24-47 (182)
437 TIGR00763 lon ATP-dependent pr 90.4 0.55 1.2E-05 56.7 7.1 22 42-63 347-368 (775)
438 PF12775 AAA_7: P-loop contain 90.4 0.51 1.1E-05 49.4 6.0 34 34-67 24-58 (272)
439 TIGR00767 rho transcription te 90.4 0.23 5E-06 54.2 3.4 25 39-63 165-189 (415)
440 TIGR01420 pilT_fam pilus retra 90.4 0.22 4.9E-06 53.9 3.4 24 41-64 121-144 (343)
441 PF13671 AAA_33: AAA domain; P 90.4 0.25 5.5E-06 45.8 3.4 24 44-67 1-24 (143)
442 COG0630 VirB11 Type IV secreto 90.3 0.29 6.3E-06 52.2 4.2 31 35-65 136-166 (312)
443 PF12846 AAA_10: AAA-like doma 90.3 0.25 5.5E-06 52.0 3.8 36 42-77 1-38 (304)
444 CHL00095 clpC Clp protease ATP 90.3 1.2 2.5E-05 54.3 9.8 16 44-59 541-556 (821)
445 PRK11174 cysteine/glutathione 90.3 0.91 2E-05 53.1 8.7 24 40-63 374-397 (588)
446 COG3421 Uncharacterized protei 90.2 3 6.4E-05 47.2 11.7 80 110-189 78-177 (812)
447 PF00265 TK: Thymidine kinase; 90.2 0.36 7.9E-06 46.9 4.3 34 43-76 2-37 (176)
448 PRK08058 DNA polymerase III su 90.1 0.42 9E-06 51.5 5.2 40 135-176 108-147 (329)
449 COG3854 SpoIIIAA ncharacterize 90.1 0.47 1E-05 47.3 5.0 28 35-62 128-157 (308)
450 KOG0734 AAA+-type ATPase conta 90.0 1.2 2.5E-05 49.7 8.4 58 137-194 396-462 (752)
451 KOG4439 RNA polymerase II tran 89.9 0.25 5.4E-06 56.3 3.3 134 12-147 310-473 (901)
452 KOG1969 DNA replication checkp 89.9 0.72 1.6E-05 53.2 6.9 20 43-62 327-346 (877)
453 KOG0733 Nuclear AAA ATPase (VC 89.9 1.1 2.3E-05 50.9 8.0 69 137-205 282-363 (802)
454 TIGR00602 rad24 checkpoint pro 89.8 1.6 3.5E-05 51.0 9.9 21 43-63 111-131 (637)
455 PRK10865 protein disaggregatio 89.8 0.87 1.9E-05 55.5 8.1 20 42-61 199-218 (857)
456 COG1435 Tdk Thymidine kinase [ 89.8 1 2.3E-05 43.9 7.0 115 42-182 4-121 (201)
457 COG1223 Predicted ATPase (AAA+ 89.8 1.1 2.3E-05 45.6 7.3 48 137-184 210-267 (368)
458 PRK10919 ATP-dependent DNA hel 89.6 0.82 1.8E-05 54.3 7.6 102 28-147 3-112 (672)
459 PTZ00361 26 proteosome regulat 89.5 0.68 1.5E-05 51.7 6.4 21 43-63 218-238 (438)
460 PRK05564 DNA polymerase III su 89.5 2.1 4.5E-05 45.8 10.0 30 33-62 14-46 (313)
461 PF06745 KaiC: KaiC; InterPro 89.5 0.4 8.6E-06 48.6 4.2 34 41-74 18-55 (226)
462 PRK10733 hflB ATP-dependent me 89.5 1.5 3.3E-05 51.7 9.7 25 43-67 186-210 (644)
463 COG1222 RPT1 ATP-dependent 26S 89.5 0.56 1.2E-05 49.8 5.3 17 42-58 185-201 (406)
464 KOG0736 Peroxisome assembly fa 89.4 2.9 6.3E-05 48.8 11.2 52 137-188 764-828 (953)
465 TIGR03263 guanyl_kin guanylate 89.4 0.3 6.5E-06 47.4 3.1 22 42-63 1-22 (180)
466 PRK13695 putative NTPase; Prov 89.4 2.4 5.2E-05 40.9 9.5 20 44-63 2-21 (174)
467 TIGR02974 phageshock_pspF psp 89.3 2.4 5.3E-05 45.6 10.3 32 29-60 9-40 (329)
468 PRK12901 secA preprotein trans 89.2 0.31 6.6E-06 58.6 3.5 118 26-147 168-300 (1112)
469 TIGR03345 VI_ClpV1 type VI sec 89.2 1.4 3.1E-05 53.6 9.3 17 43-59 209-225 (852)
470 CHL00195 ycf46 Ycf46; Provisio 89.2 2.3 5E-05 48.2 10.4 19 43-61 260-278 (489)
471 TIGR00150 HI0065_YjeE ATPase, 89.1 0.53 1.1E-05 43.4 4.3 33 33-65 13-45 (133)
472 TIGR03238 dnd_assoc_3 dnd syst 89.0 0.42 9.2E-06 53.2 4.2 32 29-60 12-50 (504)
473 KOG0349 Putative DEAD-box RNA 89.0 0.12 2.6E-06 55.4 -0.1 29 29-57 26-54 (725)
474 PRK05973 replicative DNA helic 89.0 0.36 7.9E-06 49.2 3.4 33 34-66 56-88 (237)
475 cd03289 ABCC_CFTR2 The CFTR su 88.9 1 2.2E-05 47.2 6.9 25 39-63 27-51 (275)
476 PRK13764 ATPase; Provisional 88.9 0.44 9.6E-06 55.0 4.5 30 34-63 248-278 (602)
477 CHL00095 clpC Clp protease ATP 88.9 1.4 3.1E-05 53.6 9.0 19 42-60 200-218 (821)
478 cd01128 rho_factor Transcripti 88.8 0.36 7.8E-06 49.7 3.4 25 39-63 13-37 (249)
479 PRK00300 gmk guanylate kinase; 88.7 0.35 7.7E-06 48.0 3.1 24 41-64 4-27 (205)
480 cd00820 PEPCK_HprK Phosphoenol 88.6 0.27 6E-06 43.4 2.0 24 40-63 13-36 (107)
481 TIGR03346 chaperone_ClpB ATP-d 88.6 3.8 8.3E-05 50.1 12.5 17 44-60 597-613 (852)
482 COG0396 sufC Cysteine desulfur 88.6 0.22 4.7E-06 49.8 1.5 31 136-167 161-191 (251)
483 PF04665 Pox_A32: Poxvirus A32 88.6 0.58 1.3E-05 47.7 4.6 39 38-76 8-49 (241)
484 PRK08233 hypothetical protein; 88.5 0.52 1.1E-05 45.7 4.2 24 43-66 4-27 (182)
485 COG0542 clpA ATP-binding subun 88.5 2 4.4E-05 50.8 9.4 79 44-148 523-604 (786)
486 cd00071 GMPK Guanosine monopho 88.4 0.37 8.1E-06 44.8 2.9 20 45-64 2-21 (137)
487 PRK12608 transcription termina 88.4 0.54 1.2E-05 50.9 4.5 35 30-64 118-155 (380)
488 KOG2373 Predicted mitochondria 88.3 0.19 4.2E-06 52.6 1.0 26 41-66 272-297 (514)
489 TIGR01074 rep ATP-dependent DN 88.3 1.8 4E-05 51.4 9.4 103 28-148 2-112 (664)
490 PF07728 AAA_5: AAA domain (dy 88.3 0.52 1.1E-05 43.6 3.8 24 44-67 1-24 (139)
491 cd03282 ABC_MSH4_euk MutS4 hom 88.2 0.51 1.1E-05 47.1 3.9 22 41-62 28-49 (204)
492 TIGR03346 chaperone_ClpB ATP-d 88.2 1.5 3.3E-05 53.5 8.7 21 42-62 194-214 (852)
493 PF13238 AAA_18: AAA domain; P 88.1 0.32 7E-06 43.9 2.2 17 45-61 1-17 (129)
494 PRK11034 clpA ATP-dependent Cl 88.0 2.4 5.1E-05 50.8 9.9 18 42-59 207-224 (758)
495 TIGR03375 type_I_sec_LssB type 88.0 1.1 2.3E-05 53.7 7.1 24 40-63 489-512 (694)
496 COG3839 MalK ABC-type sugar tr 88.0 0.27 6E-06 52.5 1.9 24 39-62 26-49 (338)
497 KOG0730 AAA+-type ATPase [Post 87.8 2.1 4.6E-05 49.0 8.8 115 43-193 469-592 (693)
498 PRK14530 adenylate kinase; Pro 87.8 0.49 1.1E-05 47.6 3.5 27 41-67 2-28 (215)
499 KOG1970 Checkpoint RAD17-RFC c 87.7 0.61 1.3E-05 52.1 4.3 27 42-68 110-136 (634)
500 PRK07261 topology modulation p 87.6 0.58 1.3E-05 45.3 3.8 19 44-62 2-20 (171)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-117 Score=957.90 Aligned_cols=529 Identities=33% Similarity=0.508 Sum_probs=482.3
Q ss_pred CccCCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCC---cEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 19 TSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 19 ~~~~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~---~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
...+|+.|||++++.+++.++.+|+++||+|+||||||||+|||+++.|+. +|.||||||+||+++|+|||+|+++.
T Consensus 43 i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~ 122 (674)
T KOG0922|consen 43 IQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQ 122 (674)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCC
Confidence 355688899999999999999999999999999999999999999999875 59999999999999999999999999
Q ss_pred cCCeeeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 96 LGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 96 lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
+|+.|||.+||++.+++.|+|+|+|+|+|+|++..+++ +.+|++|||||||||++.+|+++++||+++.+|+++|+|+|
T Consensus 123 lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIim 201 (674)
T KOG0922|consen 123 LGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIM 201 (674)
T ss_pred cCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999999999885 77999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccCh
Q 004875 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (726)
Q Consensus 176 SATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 255 (726)
|||+|+++|++||+. ++++.+|+ +.||+++.|+.. +..+
T Consensus 202 SATlda~kfS~yF~~------a~i~~i~G----R~fPVei~y~~~-----------------------p~~d-------- 240 (674)
T KOG0922|consen 202 SATLDAEKFSEYFNN------APILTIPG----RTFPVEILYLKE-----------------------PTAD-------- 240 (674)
T ss_pred eeeecHHHHHHHhcC------CceEeecC----CCCceeEEeccC-----------------------Cchh--------
Confidence 999999999999987 78999998 689999988642 2222
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCC----C--CcEEEEecCCCCHHHHHHHhhccC-CCc
Q 004875 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS----S--FFKVHILHSSVDTEQALMAMKICK-SHR 328 (726)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~----~--~~~v~~lh~~l~~~er~~~~~~f~-~~r 328 (726)
..+.....+..||.+++. |+||||++|+++|+.+++.|.+.. . ...+.++||.|+.++|.+++...+ +.|
T Consensus 241 -Yv~a~~~tv~~Ih~~E~~--GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~R 317 (674)
T KOG0922|consen 241 -YVDAALITVIQIHLTEPP--GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKR 317 (674)
T ss_pred -hHHHHHHHHHHHHccCCC--CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcc
Confidence 223344778889988765 799999999999999999886531 1 125789999999999999998766 556
Q ss_pred EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHhhccC
Q 004875 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLED 408 (726)
Q Consensus 329 kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~l~~ 408 (726)
|||+||||||+|||||||.||||+|++|++.||+..+++++.++||||++|.||+|||||++||+|||||++++|+.|++
T Consensus 318 KvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~ 397 (674)
T KOG0922|consen 318 KVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPL 397 (674)
T ss_pred eEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCH-hHHHHHhC
Q 004875 409 HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTF-YGRLLASF 487 (726)
Q Consensus 409 ~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~-lG~~l~~l 487 (726)
.++|||+|++|+..+|+||+ ++..+.+.|+|+|||+++++..|++.|..+||||+ + | .+|. +|+.|++|
T Consensus 398 ~~~PEI~R~~Ls~~vL~Lka-----lgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~-~--g--~lt~p~G~~ma~~ 467 (674)
T KOG0922|consen 398 QTVPEIQRVNLSSAVLQLKA-----LGINDPLRFPFIDPPPPEALEEALEELYSLGALDD-R--G--KLTSPLGRQMAEL 467 (674)
T ss_pred CCCCceeeechHHHHHHHHh-----cCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccC-c--C--CcCchHHhhhhhc
Confidence 99999999999999999964 44445566799999999999999999999999997 3 6 4776 99999999
Q ss_pred CCChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccCCCCchHH-HHHHhccccCCCCCcccccccchhhHHHHHHHHH
Q 004875 488 SLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDAL-FAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQ 566 (726)
Q Consensus 488 pl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~a~~ 566 (726)
|++|.++|+|+.+.++||+.|+++||||||+++ .|.+|.+.+.. ++..+.+|...+| ||++.+|+|.
T Consensus 468 Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~-~f~~p~~~~~~~a~~~~~kf~~~eG-----------Dh~tlL~vy~ 535 (674)
T KOG0922|consen 468 PLEPHLSKMLLKSSELGCSEEILTIAAMLSVQS-VFSRPKDKKAEDADRKRAKFANPEG-----------DHLTLLNVYE 535 (674)
T ss_pred CCCcchhhhhhhccccCCcchhhhheeeeeccc-eecCccchhhhhhhHHHHhhcCccc-----------CHHHHHHHHH
Confidence 999999999999999999999999999999885 89999987776 8888999998887 8999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhCCCccccCCC
Q 004875 567 FWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG 642 (726)
Q Consensus 567 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~~~~~~~~~~ 642 (726)
.|.. ++..++||++||+|+++|+.+.+||.||.+++.+++++..+ +.+
T Consensus 536 ~~~~---------------------------~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s-~~~ 583 (674)
T KOG0922|consen 536 SWKE---------------------------NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSS-CGG 583 (674)
T ss_pred HHHh---------------------------cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccC-CCC
Confidence 9986 34578999999999999999999999999999999988844 444
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-116 Score=935.70 Aligned_cols=568 Identities=28% Similarity=0.386 Sum_probs=501.0
Q ss_pred CCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCC----cEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME----PILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 22 ~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~----~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.|+.||||+++++++.++.+++++||.|+||||||||+||||.|.|.. +|.||||||+||+++|.|||+|+|+.+|
T Consensus 260 ~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 260 VRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred HHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 488999999999999999999999999999999999999999998863 5999999999999999999999999999
Q ss_pred CeeeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 98 ~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
..|||+|||+++++.+|.|.|||+|||+|+++.++ .+..|++|||||||||++.+|++.+++|.+.+.||++|++++||
T Consensus 340 ~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSA 418 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSA 418 (902)
T ss_pred cccceEEEeccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeecc
Confidence 99999999999999999999999999999999887 47799999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhH
Q 004875 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (726)
Q Consensus 178 Tl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (726)
|+|+++|+.||++ ++++.+|+ +.|||+++|-.. |..+ .
T Consensus 419 T~DAekFS~fFDd------apIF~iPG----RRyPVdi~Yt~~-----------------------PEAd---------Y 456 (902)
T KOG0923|consen 419 TMDAEKFSAFFDD------APIFRIPG----RRYPVDIFYTKA-----------------------PEAD---------Y 456 (902)
T ss_pred ccCHHHHHHhccC------CcEEeccC----cccceeeecccC-----------------------Cchh---------H
Confidence 9999999999987 78999998 689999987432 2222 2
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhc-------CCCCCcEEEEecCCCCHHHHHHHhhccCC-CcE
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK-------PLSSFFKVHILHSSVDTEQALMAMKICKS-HRK 329 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~-------~~~~~~~v~~lh~~l~~~er~~~~~~f~~-~rk 329 (726)
.+.....+..||...+. |+||||+.+.++|+.+.+.|. ....++.+.|+|++||.+.|.++++.-+. .||
T Consensus 457 ldAai~tVlqIH~tqp~--GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRK 534 (902)
T KOG0923|consen 457 LDAAIVTVLQIHLTQPL--GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARK 534 (902)
T ss_pred HHHHHhhheeeEeccCC--ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCcee
Confidence 33444677788888775 899999999999987776654 33456789999999999999999987554 469
Q ss_pred EEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHh-hccC
Q 004875 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG-TLED 408 (726)
Q Consensus 330 VlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~-~l~~ 408 (726)
||+||||||+||||+||.||||+|++|++.|++.+++++|.++|||||+|.||+|||||++||+|||||+...|. .++.
T Consensus 535 VVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~ 614 (902)
T KOG0923|consen 535 VVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEE 614 (902)
T ss_pred EEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998885 6888
Q ss_pred CCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCC
Q 004875 409 HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFS 488 (726)
Q Consensus 409 ~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lp 488 (726)
.+.|||+|++|.+++|.|+ ++|..+.+.|+|+|||+.+++..|+++|+.||||+. . | +||.+||.|++||
T Consensus 615 ~t~PEIqRtnL~nvVL~Lk-----SLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~-~--G--eLTk~GrrMaEfP 684 (902)
T KOG0923|consen 615 MTVPEIQRTNLGNVVLLLK-----SLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNH-L--G--ELTKLGRRMAEFP 684 (902)
T ss_pred CCCcceeeccchhHHHHHH-----hcCcchhcccccCCCCChHHHHHHHHHHHHhhcccc-c--c--chhhhhhhhhhcC
Confidence 8999999999999999995 455566677799999999999999999999999998 3 7 7999999999999
Q ss_pred CChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccCCCCchHHHHHHhccccCCCCCcccccccchhhHHHHHHHHHHH
Q 004875 489 LSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFW 568 (726)
Q Consensus 489 l~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~a~~~w 568 (726)
+||+++|||+.+..++|.+|+++||||||+.+++|++|.+++..++.++..|..+.| ||+.++++|+.|
T Consensus 685 ~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~g-----------Dhi~~L~vyn~w 753 (902)
T KOG0923|consen 685 VDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVG-----------DHIVLLNVYNQW 753 (902)
T ss_pred CCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCc-----------chhhhhHHHHHH
Confidence 999999999999999999999999999999999999999988888999998887755 999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhCCCccccCCCCCCCCC
Q 004875 569 QHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYD 648 (726)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~~~~~~~~~~~~~~~~ 648 (726)
.. .+.+.+||.+||+++++|.++++||.||..++.+.+...++..+
T Consensus 754 ~e---------------------------s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~------- 799 (902)
T KOG0923|consen 754 KE---------------------------SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQN------- 799 (902)
T ss_pred hh---------------------------cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChH-------
Confidence 87 46688999999999999999999999999999998887666333
Q ss_pred CCccccchhccCCCCCCCCCCcccccCCCCCccccccccccccCCCC
Q 004875 649 PYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQ 695 (726)
Q Consensus 649 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (726)
.+..+..|...|++ .+...-..++|+.-.+.-.+ -|+||++
T Consensus 800 ~~~~irk~i~aGff-----~h~a~l~~~g~y~tvk~~~t-v~~hp~S 840 (902)
T KOG0923|consen 800 DLDKIRKAITAGFF-----YHTAKLSKGGHYRTVKHPQT-VSIHPNS 840 (902)
T ss_pred HHHHHHHHHhcccc-----ccceeccCCCcceeeccCcc-eeecCcc
Confidence 33344444444433 22333345555555555444 3556655
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-113 Score=915.45 Aligned_cols=549 Identities=28% Similarity=0.437 Sum_probs=485.4
Q ss_pred CccCCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC---CcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 19 TSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 19 ~~~~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~---~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
..-+++.||++..+.+++..|.+|++|||+|+||||||||++||+++.|. +.|.||||||+||+++|+||++|++..
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 45568889999999999999999999999999999999999999999987 479999999999999999999999999
Q ss_pred cCCeeeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 96 LGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 96 lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
+|..|||.|||++.+++.|.|.|||+|+||++...+. .+.+|++||+||||||++++|++++++|.++.+|.|+|+|++
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEe
Confidence 9999999999999999999999999999999987765 366999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccCh
Q 004875 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (726)
Q Consensus 176 SATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 255 (726)
|||||+++|++||++ ++.+++|+ +.|||++.|.....+
T Consensus 507 SATm~a~kf~nfFgn------~p~f~IpG----RTyPV~~~~~k~p~e-------------------------------- 544 (1042)
T KOG0924|consen 507 SATMDAQKFSNFFGN------CPQFTIPG----RTYPVEIMYTKTPVE-------------------------------- 544 (1042)
T ss_pred eccccHHHHHHHhCC------CceeeecC----CccceEEEeccCchH--------------------------------
Confidence 999999999999996 77888988 689998877542211
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhc----CC----CCCcEEEEecCCCCHHHHHHHhhccCCC
Q 004875 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK----PL----SSFFKVHILHSSVDTEQALMAMKICKSH 327 (726)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~----~~----~~~~~v~~lh~~l~~~er~~~~~~f~~~ 327 (726)
...+....-...||...+ .|+||||.+|+++++..+..+. .. ..++.|+++++.||.+-|.++++...++
T Consensus 545 DYVeaavkq~v~Ihl~~~--~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~ 622 (1042)
T KOG0924|consen 545 DYVEAAVKQAVQIHLSGP--PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG 622 (1042)
T ss_pred HHHHHHHhhheEeeccCC--CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC
Confidence 112223334445665554 3899999999999887766553 21 2368999999999999999999865555
Q ss_pred -cEEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH-hh
Q 004875 328 -RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF-GT 405 (726)
Q Consensus 328 -rkVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~-~~ 405 (726)
||+||||||||+|+|||+|.||||||++|.++|++..+++.+.++|||+|+|.||+|||||++||.||||||+..| +.
T Consensus 623 vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~e 702 (1042)
T KOG0924|consen 623 VRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNE 702 (1042)
T ss_pred ceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhh
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999877 58
Q ss_pred ccCCCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHH
Q 004875 406 LEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLA 485 (726)
Q Consensus 406 l~~~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~ 485 (726)
|.+.++|||+|++|.+++|.|++ ++..+...|+|+|||+.+.+..|+..|..+|||+. . | .||++|+.|+
T Consensus 703 ml~stvPEIqRTNl~nvVLlLks-----lgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~-~--g--~LT~lG~~Mv 772 (1042)
T KOG0924|consen 703 MLPSTVPEIQRTNLSNVVLLLKS-----LGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDN-T--G--QLTPLGRKMV 772 (1042)
T ss_pred cccCCCchhhhcchhhHHHHHHh-----cChhhhhCCCcCCCCHHHHHHHHHHHHHHhhcccc-C--C--ccchhhHHhh
Confidence 99999999999999999999964 44444556799999999999999999999999998 3 6 5999999999
Q ss_pred hCCCChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccCCCCchHHHHHHhccccCCCCCcccccccchhhHHHHHHHH
Q 004875 486 SFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAF 565 (726)
Q Consensus 486 ~lpl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~a~ 565 (726)
+|||||.++||||.++.+||.+|+++|++|||+.. .|++|.++++.++.++.+|+..++ |||++||+|
T Consensus 773 efpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~-VF~rpker~eead~ar~Kf~~~~s-----------DhLTlLNVf 840 (1042)
T KOG0924|consen 773 EFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPA-VFYRPKEREEEADAAREKFQVPES-----------DHLTLLNVF 840 (1042)
T ss_pred hCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccc-eeeccccchhhhhhHHhhhcCCCC-----------chhhHHHHH
Confidence 99999999999999999999999999999999864 899999999999999999998776 999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhCCCccccCCC--C
Q 004875 566 QFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG--L 643 (726)
Q Consensus 566 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~~~~~~~~~~--~ 643 (726)
++|.+ ++....||.+|||+.++|+.++++|.||+.+++.++++..|+.+. .
T Consensus 841 ~qw~~---------------------------~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~dwdiv 893 (1042)
T KOG0924|consen 841 NQWRK---------------------------NKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSDDWDIV 893 (1042)
T ss_pred HHHHh---------------------------cCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCchHHHH
Confidence 99987 456789999999999999999999999999999999988875221 1
Q ss_pred CCCCCCCccccchhccCC
Q 004875 644 PTYYDPYEFEHTCLLNCD 661 (726)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~ 661 (726)
.....+..|++.|.++|.
T Consensus 894 rKCIcs~~fhn~Arlkg~ 911 (1042)
T KOG0924|consen 894 RKCICSAYFHNAARLKGI 911 (1042)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 133345555556665553
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-107 Score=844.12 Aligned_cols=549 Identities=29% Similarity=0.432 Sum_probs=485.9
Q ss_pred CCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC---CcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 22 ~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~---~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
.|..||+|.++.+.++.+.+||.++++|+||||||||+|||+++... +.|.||||||.+|+++|+|||+|++..+|.
T Consensus 42 ~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~ 121 (699)
T KOG0925|consen 42 KRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGE 121 (699)
T ss_pred HHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccch
Confidence 37889999999999999999999999999999999999999987533 579999999999999999999999999999
Q ss_pred eeeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 99 ~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
+|||.|+|+++.+++|-+.|||+|||+|+..++++ +.+|++||+||||||++.+|.+++++|.+...|||+|+|+||||
T Consensus 122 EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSat 200 (699)
T KOG0925|consen 122 EVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSAT 200 (699)
T ss_pred hccccccccccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecc
Confidence 99999999999999999999999999999999875 67999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHH
Q 004875 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (726)
Q Consensus 179 l~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 258 (726)
+++++|..||++ ++++.+|+ .+|++++|.++ ...+..
T Consensus 201 l~a~Kfq~yf~n------~Pll~vpg-----~~PvEi~Yt~e--------------------------------~erDyl 237 (699)
T KOG0925|consen 201 LDAEKFQRYFGN------APLLAVPG-----THPVEIFYTPE--------------------------------PERDYL 237 (699)
T ss_pred cchHHHHHHhCC------CCeeecCC-----CCceEEEecCC--------------------------------CChhHH
Confidence 999999999987 78888987 47888887542 223345
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC-------CCCCcEEEEecCCCCHHHHHHHhhccC------
Q 004875 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------LSSFFKVHILHSSVDTEQALMAMKICK------ 325 (726)
Q Consensus 259 ~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~-------~~~~~~v~~lh~~l~~~er~~~~~~f~------ 325 (726)
+.+..++..||..+. .|+||||+++.++|+..++.+.. ......|+|+| +.++.++++...
T Consensus 238 EaairtV~qih~~ee--~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~ 311 (699)
T KOG0925|consen 238 EAAIRTVLQIHMCEE--PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGA 311 (699)
T ss_pred HHHHHHHHHHHhccC--CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCC
Confidence 566688889998776 48999999999999999988752 23457899999 444555555331
Q ss_pred CCcEEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHh-
Q 004875 326 SHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG- 404 (726)
Q Consensus 326 ~~rkVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~- 404 (726)
.+|||+|+||+||++++|++|.||||+|+.|+++|||+...+++.+.||||++|.||+|||||++||+|||||+++.|+
T Consensus 312 ~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 312 YGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred ccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 2579999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred hccCCCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHH
Q 004875 405 TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLL 484 (726)
Q Consensus 405 ~l~~~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l 484 (726)
.|.+.+.|||+|++|.+++|++|.++ +.+...| +|+|||.++++.+|++.|..++|+|+ + | +||++|..|
T Consensus 392 em~~~typeilrsNL~s~VL~LKklg---I~dlvhf--dfmDpPAPEtLMrALE~LnYLaaLdD-d--G--nLT~lG~im 461 (699)
T KOG0925|consen 392 EMQPQTYPEILRSNLSSTVLQLKKLG---IDDLVHF--DFMDPPAPETLMRALEVLNYLAALDD-D--G--NLTSLGEIM 461 (699)
T ss_pred cCCCCCcHHHHHHhhHHHHHHHHhcC---cccccCC--cCCCCCChHHHHHHHHHhhhhhhhCC-C--c--ccchhhhhh
Confidence 79999999999999999999997533 4444444 99999999999999999999999998 4 7 599999999
Q ss_pred HhCCCChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccCCC-CchHHHHHHhccccCCCCCcccccccchhhHHHHHH
Q 004875 485 ASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPF-GDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLC 563 (726)
Q Consensus 485 ~~lpl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~ 563 (726)
++||+||++||||+.+++|.|..|+++|+||||+.+ .|++|. +.++++++++..|.+.|| ||++++|
T Consensus 462 SEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPn-cFvRp~~~a~kaAdeak~~faH~dG-----------DHlTLln 529 (699)
T KOG0925|consen 462 SEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPN-CFVRPTSSASKAADEAKETFAHIDG-----------DHLTLLN 529 (699)
T ss_pred hcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCc-cccCCChhHHHHHHHHHHHhccCCc-----------chHHHHH
Confidence 999999999999999999999999999999999864 899988 677888999999999988 7788888
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhCCCccccCCCC
Q 004875 564 AFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGL 643 (726)
Q Consensus 564 a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~~~~~~~~~~~ 643 (726)
+|.+|+. ++....||++||||+++|..+.++|.||.++|.|+++++.+..-+.
T Consensus 530 VYhAfkq---------------------------~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S 582 (699)
T KOG0925|consen 530 VYHAFKQ---------------------------NNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGS 582 (699)
T ss_pred HHHHHHh---------------------------cCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCC
Confidence 8887764 3456899999999999999999999999999999999998866665
Q ss_pred CCCCCCCccccchhccCCCCCCCCCCcccccCC
Q 004875 644 PTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHL 676 (726)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 676 (726)
+. .|..+.+||++| ..|.++.|+++.
T Consensus 583 ~~---y~~nirKALvsg----yFmqVA~~~~~~ 608 (699)
T KOG0925|consen 583 RD---YYVNIRKALVSG----YFMQVAHLERGG 608 (699)
T ss_pred hh---HHHHHHHHHHHH----HHHHHHhhccCC
Confidence 65 555667777665 456666666655
No 5
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=4.9e-104 Score=899.13 Aligned_cols=558 Identities=35% Similarity=0.489 Sum_probs=498.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC-----CCcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 20 SPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 20 ~~~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~-----~~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
...|.+||+|.++++|++++.++++++|+|+||||||||+|||+++.. .++|+||||||++|+++|+||+.|++.
T Consensus 166 ~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 166 LRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred HHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 445789999999999999999999999999999999999999999864 468999999999999999999999999
Q ss_pred ccCCeeeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 95 ~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
.+|..|||+||.++..+..+.+.|||+|+|++.+..++ .+.+++|||+||+|||++++||++.++|.++.++|++|+|+
T Consensus 246 ~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvIL 324 (924)
T KOG0920|consen 246 SLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVIL 324 (924)
T ss_pred ccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEE
Confidence 99999999999999998889999999999999999865 46799999999999999999999999999999999999999
Q ss_pred eccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCC-----cc
Q 004875 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS-----MA 249 (726)
Q Consensus 175 mSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~-----~~ 249 (726)
||||+|++.|++||++ ++++.+|+ +.||+..+|+|++...+++........ .++... ..
T Consensus 325 MSAT~dae~fs~YF~~------~pvi~i~g----rtfpV~~~fLEDil~~~~~~~~~~~~~------~~~~~~~~~~~~~ 388 (924)
T KOG0920|consen 325 MSATLDAELFSDYFGG------CPVITIPG----RTFPVKEYFLEDILSKTGYVSEDDSAR------SGPERSQLRLARL 388 (924)
T ss_pred eeeecchHHHHHHhCC------CceEeecC----CCcchHHHHHHHHHHHhcccccccccc------cccccCccccccc
Confidence 9999999999999996 78899998 689999999999998876432221111 111111 00
Q ss_pred ccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC-----CCCcEEEEecCCCCHHHHHHHhhcc
Q 004875 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-----SSFFKVHILHSSVDTEQALMAMKIC 324 (726)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~-----~~~~~v~~lh~~l~~~er~~~~~~f 324 (726)
........++++.+++.+|+.... .|.||||+||+++|..+.+.|... ...+.+.++|+.|+.++|+.+++.+
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~~~--~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p 466 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDEREF--EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP 466 (924)
T ss_pred hhccccccHHHHHHHHHhcccCCC--CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC
Confidence 001112557899999999998743 489999999999999999999632 2348899999999999999999987
Q ss_pred CCC-cEEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 325 KSH-RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 325 ~~~-rkVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
..| ||||+||||||+|||||||.||||||+.|++.||+..++.++...|+|||++.||+|||||+++|.||+||++..|
T Consensus 467 p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 467 PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRY 546 (924)
T ss_pred CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhh
Confidence 776 5999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccC-CCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHH
Q 004875 404 GTLED-HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGR 482 (726)
Q Consensus 404 ~~l~~-~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~ 482 (726)
+.+.. +++|||+|.+|.+++|++|++ .+++...|+..+++||+.+++..|+..|..+||++. + .+||++|+
T Consensus 547 ~~~~~~~q~PEilR~pL~~l~L~iK~l---~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~-~----e~LT~LG~ 618 (924)
T KOG0920|consen 547 EKLMLAYQLPEILRTPLEELCLHIKVL---EQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDE-S----EELTPLGL 618 (924)
T ss_pred hhcccccCChHHHhChHHHhhheeeec---cCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccC-c----ccchHHHH
Confidence 98776 999999999999999999854 467778999999999999999999999999999998 3 37999999
Q ss_pred HHHhCCCChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccCCCCchHHHHHHhccccCCCCCcccccccchhhHHHHH
Q 004875 483 LLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNL 562 (726)
Q Consensus 483 ~l~~lpl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ 562 (726)
+|++||+||++|||++.++.|||++++++|||+|+. ++||+.|.++++.+++++..|..+++ +|+|+++
T Consensus 619 ~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~-k~PF~~~~~~~~~~~~~~~~~~~~~~----------SD~la~~ 687 (924)
T KOG0920|consen 619 HLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSF-KSPFVSPLGKREEADKAKKLLALDSI----------SDHLAVV 687 (924)
T ss_pred HHHhCCCccccchhheehhhccccchhhhHHHHhcc-CCCcccCCCchhHHHHHHHHhccCCc----------chHHHHH
Confidence 999999999999999999999999999999999995 46999999999989988888876543 6999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhCCCcc
Q 004875 563 CAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFL 637 (726)
Q Consensus 563 ~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~~~~~ 637 (726)
+||+.|+++.+.+ ...+.+||++|||++.+|+++++++.|+...++++++-..
T Consensus 688 ~ay~~w~~~~~~~----------------------~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~ 740 (924)
T KOG0920|consen 688 RAYAGWREILRSG----------------------PSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPI 740 (924)
T ss_pred HHHHHHHHHHhcc----------------------chHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccC
Confidence 9999999986643 2468999999999999999999999999999999876433
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.4e-101 Score=912.87 Aligned_cols=583 Identities=25% Similarity=0.375 Sum_probs=491.5
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCC---cEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~---~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
+.+||++.++++|++++.+|+++||+|+||||||||+|+++++.+.+ .|+||||||++|+++|.++++++++.+|..
T Consensus 70 ~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 70 PENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 56799999999999999999999999999999999999999987643 799999999999999999999999999999
Q ss_pred eeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 100 Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
|||.++++++.+.+++|+|||||+|++++..++. +.+|++|||||||||++++||++++++.++.+++++|+|+||||+
T Consensus 150 VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATi 228 (1294)
T PRK11131 150 VGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATI 228 (1294)
T ss_pred eceeecCccccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCC
Confidence 9999999999999999999999999999987764 779999999999999999999999999999989999999999999
Q ss_pred CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHH
Q 004875 180 DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHK 259 (726)
Q Consensus 180 ~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 259 (726)
+.+.|++||.. .+++.+++ +.|+++++|.+... . +.........
T Consensus 229 d~e~fs~~F~~------apvI~V~G----r~~pVei~y~p~~~-----------------------~---~~~~~~d~l~ 272 (1294)
T PRK11131 229 DPERFSRHFNN------APIIEVSG----RTYPVEVRYRPIVE-----------------------E---ADDTERDQLQ 272 (1294)
T ss_pred CHHHHHHHcCC------CCEEEEcC----ccccceEEEeeccc-----------------------c---cchhhHHHHH
Confidence 99999999975 34566665 45777776643100 0 0000111222
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEccccc
Q 004875 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAE 338 (726)
Q Consensus 260 li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~-~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae 338 (726)
.+.+.+..++.. ..|+||||+||.++|+.+++.|...+ ....+.++||++++++|.++++.. ++++||||||+||
T Consensus 273 ~ll~~V~~l~~~---~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-g~rkIIVATNIAE 348 (1294)
T PRK11131 273 AIFDAVDELGRE---GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-SGRRIVLATNVAE 348 (1294)
T ss_pred HHHHHHHHHhcC---CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-CCeeEEEeccHHh
Confidence 222333334322 24799999999999999999998644 235689999999999999998863 4569999999999
Q ss_pred ccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHhhccCCCCCcccccC
Q 004875 339 SSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLS 418 (726)
Q Consensus 339 ~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~l~~~~~pei~r~~ 418 (726)
+|||||+|+||||+|++|.++||+.++++.+...|||+++|.||+|||||.++|+||+||++++|..+++++.|||+|++
T Consensus 349 tSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~ 428 (1294)
T PRK11131 349 TSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTN 428 (1294)
T ss_pred hccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHH
Q 004875 419 LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVL 498 (726)
Q Consensus 419 L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~ 498 (726)
|.+++|+++.++ ++++..| +|++||+.++|.+|++.|.++|||+.+..++..+||++|+.|++||+||++||||+
T Consensus 429 L~~viL~lk~lg---l~di~~F--~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl 503 (1294)
T PRK11131 429 LASVILQMTALG---LGDIAAF--PFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVL 503 (1294)
T ss_pred HHHHHHHHHHcC---CCCccee--eCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHH
Confidence 999999997543 4555444 99999999999999999999999986311122469999999999999999999999
Q ss_pred hhcccCCHHHHHHHHHHhccCCCcccCCCCchHHHHHHhccccCCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhh
Q 004875 499 KFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRL 578 (726)
Q Consensus 499 ~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~a~~~w~~~~~~~~~~ 578 (726)
.|..+||++|+++|||+||+++ ||.+|.++++.++..+.+|.+.+| ||++++|+|+.|+...+..
T Consensus 504 ~a~~~~c~~evl~IaA~Lsv~d-pf~~p~~~~~~a~~~~~~f~~~~s-----------D~lt~ln~~~~~~~~~~~~--- 568 (1294)
T PRK11131 504 EAQKHGCVREVMIITSALSIQD-PRERPMDKQQASDEKHRRFADKES-----------DFLAFVNLWNYLQEQQKAL--- 568 (1294)
T ss_pred HhhhcCCHHHHHHHHHHHcCCC-cccCCchhHHHHHHHHHhhCCCCC-----------CHHHHHHHHHHHHHHHhhh---
Confidence 9999999999999999999986 899999988888889999987766 9999999999998632211
Q ss_pred hhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCCccccchhc
Q 004875 579 DHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLL 658 (726)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (726)
+.+..++||++||||+.+|++|.+++.||.+++++++++. +..+. +++.+|+|++
T Consensus 569 ------------------s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~----~~~~~---~~~~i~~all 623 (1294)
T PRK11131 569 ------------------SSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPV----NSEPA---EYREIHTALL 623 (1294)
T ss_pred ------------------cchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCC----CCCcc---cHHHHHHHHH
Confidence 2345678999999999999999999999999999998844 33233 7889999999
Q ss_pred cCCCCCCCCCCcccccCCCCCccccccccccccCCCCcc
Q 004875 659 NCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQ 697 (726)
Q Consensus 659 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (726)
+|++..- +....+...|...+ ....|+||+|.-
T Consensus 624 ~G~~~nv----a~~~~~~~~y~~~~--~~~~~ihP~S~L 656 (1294)
T PRK11131 624 TGLLSHI----GMKDAEKQEYTGAR--NARFSIFPGSGL 656 (1294)
T ss_pred hhcHHHH----eeccCCCCeEEccC--CcEEEEcCCccc
Confidence 9998643 22222212233222 334578888754
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-99 Score=865.90 Aligned_cols=539 Identities=30% Similarity=0.402 Sum_probs=464.6
Q ss_pred CCCCccCCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC---CcEEEecchHHHHHHHHHHHHhhc
Q 004875 16 SPFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGR 92 (726)
Q Consensus 16 ~~~~~~~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~---~~Iivt~Prrlaa~~~a~~va~~~ 92 (726)
.+.....+..||++..+.++++++.+|+++||+||||||||||+|+++++.++ +.|+||||||+||.++|+|+|+++
T Consensus 39 ~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel 118 (845)
T COG1643 39 VPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEEL 118 (845)
T ss_pred cchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHh
Confidence 33345568889999999999999999999999999999999999999999985 589999999999999999999999
Q ss_pred CCccCCeeeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCC-Cce
Q 004875 93 NCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLR 171 (726)
Q Consensus 93 ~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~-~lk 171 (726)
|+.+|+.|||.+|+++.++++|+|.|||+|+|+++++.++. +..|++|||||||||++++|++++++++++..++ |+|
T Consensus 119 ~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 119 GEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred CCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 99999999999999999999999999999999999998875 7899999999999999999999999999777666 799
Q ss_pred EEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 004875 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (726)
Q Consensus 172 lIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (726)
+|+||||+|.++|++||++ ++++.+++ +.|||+++|.+... .+
T Consensus 198 iIimSATld~~rfs~~f~~------apvi~i~G----R~fPVei~Y~~~~~-----------------------~d---- 240 (845)
T COG1643 198 LIIMSATLDAERFSAYFGN------APVIEIEG----RTYPVEIRYLPEAE-----------------------AD---- 240 (845)
T ss_pred EEEEecccCHHHHHHHcCC------CCEEEecC----CccceEEEecCCCC-----------------------cc----
Confidence 9999999999999999987 78888888 68999999855311 00
Q ss_pred ccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC--CCCCcEEEEecCCCCHHHHHHHhhccCCC-c
Q 004875 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--LSSFFKVHILHSSVDTEQALMAMKICKSH-R 328 (726)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~--~~~~~~v~~lh~~l~~~er~~~~~~f~~~-r 328 (726)
..+.+.+... +......+.|+||||+||.++|+.+++.|.+ ++..+.|.|+||.|+.++|.++++...++ |
T Consensus 241 ---~~l~~ai~~~---v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~R 314 (845)
T COG1643 241 ---YILLDAIVAA---VDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKR 314 (845)
T ss_pred ---hhHHHHHHHH---HHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcc
Confidence 0022222222 2223333468999999999999999999986 34678999999999999999999988777 5
Q ss_pred EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHhhccC
Q 004875 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLED 408 (726)
Q Consensus 329 kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~l~~ 408 (726)
|||+||||||||||||||+||||+|+.|+++||+.+++..+.++|||||+|.||+|||||++||+|||||++++|..|++
T Consensus 315 KVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~ 394 (845)
T COG1643 315 KVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPE 394 (845)
T ss_pred eEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCC
Q 004875 409 HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFS 488 (726)
Q Consensus 409 ~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lp 488 (726)
++.|||+|+||+.++|+++.+| ++ .+...|+|+|||+..++.+|++.|..+||||. + | .||++|+.|+.||
T Consensus 395 ~t~PEIlrtdLs~~vL~l~~~G---~~-~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~-~--g--~LT~lG~~ms~lp 465 (845)
T COG1643 395 FTLPEILRTDLSGLVLQLKSLG---IG-QDIAPFPFLDPPPEAAIQAALTLLQELGALDD-S--G--KLTPLGKQMSLLP 465 (845)
T ss_pred CCChhhhhcchHHHHHHHHhcC---CC-CCcccCccCCCCChHHHHHHHHHHHHcCCcCC-C--C--CCCHHHHHHHhCC
Confidence 9999999999999999997654 32 13345599999999999999999999999998 3 6 4999999999999
Q ss_pred CChHHHHHHHhhcccCCHHHHHHHHHHhccCC--CcccCCCCchH---HHHHHh-ccccCCCCCcccccccchhhHHHHH
Q 004875 489 LSFDASVLVLKFGEIGMLREGILLGILMDTQP--LPILHPFGDDA---LFAEYT-GCYFGGDGNTRLLTGRKEMVIMGNL 562 (726)
Q Consensus 489 l~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~--~~~~~p~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~d~l~~~ 562 (726)
+||++|+||+.+.++||+.|+++|||||++++ +.|..+.+.+. ..+..+ .++... ..-..|++..+
T Consensus 466 ldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~d~~~ll 537 (845)
T COG1643 466 LDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNA--------ADPRGDHLLLL 537 (845)
T ss_pred CChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhccC--------CCcchHHHHHH
Confidence 99999999999999999999999999999986 14666766544 333333 222220 01124899999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHh-hCCCc
Q 004875 563 CAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHR-FRPKF 636 (726)
Q Consensus 563 ~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~-~~~~~ 636 (726)
++|..|....+++. ......||..++++.++|.++..++.+++..+.+ ++...
T Consensus 538 ~~~~~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~ 591 (845)
T COG1643 538 EAFPDRIARKRAKG---------------------EYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRIL 591 (845)
T ss_pred HHHHHHHHhhhccc---------------------hhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchh
Confidence 99999987543111 2356899999999999999999999999998887 54433
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.3e-97 Score=882.58 Aligned_cols=554 Identities=26% Similarity=0.397 Sum_probs=480.0
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC---CcEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~---~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
+.+||+++++.+|++++.+|+++||+|+||||||||+|+++++.+. +.|+|+||||++|+++|.|+++++|+.+|..
T Consensus 63 ~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~ 142 (1283)
T TIGR01967 63 PDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEK 142 (1283)
T ss_pred CCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceE
Confidence 5679999999999999999999999999999999999999999764 3799999999999999999999999999999
Q ss_pred eeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 100 Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
|||.++++++.+.+|+|+|||+|+|++++..++. +.+|++|||||||||++++|+++++++.++..++++|+|+||||+
T Consensus 143 VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATl 221 (1283)
T TIGR01967 143 VGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATI 221 (1283)
T ss_pred EeeEEcCCcccCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 9999999999999999999999999999988764 679999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHH
Q 004875 180 DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHK 259 (726)
Q Consensus 180 ~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 259 (726)
+.+.|++||+. .+++.+++ +.|++++.|..... .. ........+
T Consensus 222 d~~~fa~~F~~------apvI~V~G----r~~PVev~Y~~~~~-----------------------~~---~~~~~~~~~ 265 (1283)
T TIGR01967 222 DPERFSRHFNN------APIIEVSG----RTYPVEVRYRPLVE-----------------------EQ---EDDDLDQLE 265 (1283)
T ss_pred CHHHHHHHhcC------CCEEEECC----CcccceeEEecccc-----------------------cc---cchhhhHHH
Confidence 99999999975 35666776 56788776643100 00 000011223
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEccccc
Q 004875 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAE 338 (726)
Q Consensus 260 li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~-~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae 338 (726)
.+...+..+... ..|+||||+||.++|+.+++.|.... .++.+.++||+|+.++|.++++.+ +++||||||||||
T Consensus 266 ~i~~~I~~l~~~---~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~-~~rkIVLATNIAE 341 (1283)
T TIGR01967 266 AILDAVDELFAE---GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH-SGRRIVLATNVAE 341 (1283)
T ss_pred HHHHHHHHHHhh---CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC-CCceEEEeccHHH
Confidence 333444444433 24899999999999999999998643 357899999999999999998765 3579999999999
Q ss_pred ccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHhhccCCCCCcccccC
Q 004875 339 SSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLS 418 (726)
Q Consensus 339 ~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~l~~~~~pei~r~~ 418 (726)
+|||||+|+||||+|++|.++||+.+++..+...|||+++|.||+|||||.++|+||+||++++|+.+++++.|||+|++
T Consensus 342 tSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~ 421 (1283)
T TIGR01967 342 TSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTN 421 (1283)
T ss_pred hccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCC-CCCCCHhHHHHHhCCCChHHHHHH
Q 004875 419 LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRG-RYEPTFYGRLLASFSLSFDASVLV 497 (726)
Q Consensus 419 L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g-~~~lT~lG~~l~~lpl~p~~~~~l 497 (726)
|.+++|+++.++ ++++..| +|++||+..+|.+|++.|..+||||. + | ...||++|+.|+.||+||++||||
T Consensus 422 L~~viL~l~~lg---~~di~~f--~fldpP~~~~i~~A~~~L~~LGAld~-~--~~~~~LT~lGr~ma~LPldPrlarmL 493 (1283)
T TIGR01967 422 LASVILQMLALR---LGDIAAF--PFIEAPDPRAIRDGFRLLEELGALDD-D--EAEPQLTPIGRQLAQLPVDPRLARML 493 (1283)
T ss_pred HHHHHHHHHhcC---CCCcccc--cCCCCCCHHHHHHHHHHHHHCCCCCC-C--CCCccccHHHHHHhhcCCChHHHHHH
Confidence 999999997654 4454445 99999999999999999999999997 3 3 236999999999999999999999
Q ss_pred HhhcccCCHHHHHHHHHHhccCCCcccCCCCchHHHHHHhccccCCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhh
Q 004875 498 LKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQR 577 (726)
Q Consensus 498 ~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~a~~~w~~~~~~~~~ 577 (726)
+.+..+||++|+++|||+||+++ ||.+|.++++.++..+.+|.+.++ ||++.+|+|+.|.+.....
T Consensus 494 l~a~~~gcl~e~l~IaA~Ls~~d-p~~~p~~~~~~a~~~~~~f~~~~s-----------D~l~~L~~~~~~~~~~~~~-- 559 (1283)
T TIGR01967 494 LEAHRLGCLQEVLIIASALSIQD-PRERPMEKQQAADQAHARFKDPRS-----------DFLSRVNLWRHIEEQRQAL-- 559 (1283)
T ss_pred HHhhhcCCHHHHHHHHHHHcCCC-cCCCcchhHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHHhhhhc--
Confidence 99999999999999999999986 888999988888888988876655 8999999999997642211
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCCccccchh
Q 004875 578 LDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCL 657 (726)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (726)
+.+..+.||++||||+.+|++|.+++.||.+++++++++. +..+. +++..|.|+
T Consensus 560 -------------------~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~----~~~~~---~~~~i~~~l 613 (1283)
T TIGR01967 560 -------------------SANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKL----NEEPA---DYDAIHKAL 613 (1283)
T ss_pred -------------------cchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCc----CCCCc---cHHHHHHHH
Confidence 1345689999999999999999999999999999988743 22233 456689999
Q ss_pred ccCCCCCC
Q 004875 658 LNCDPPRD 665 (726)
Q Consensus 658 ~~~~l~~~ 665 (726)
++|++..-
T Consensus 614 ~~g~~~~i 621 (1283)
T TIGR01967 614 LSGLLSQI 621 (1283)
T ss_pred HHhhHHHH
Confidence 99998764
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-90 Score=751.07 Aligned_cols=533 Identities=28% Similarity=0.386 Sum_probs=435.7
Q ss_pred CCCCCccCCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCC--------cEEEecchHHHHHHHHH
Q 004875 15 SSPFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME--------PILCTQPRRFAVVAVAK 86 (726)
Q Consensus 15 ~~~~~~~~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~--------~Iivt~Prrlaa~~~a~ 86 (726)
+.+..+..|..|||....++|+++|.+|.+|||||+||||||||+|||++|.|.+ .|.+|||||+||++.|+
T Consensus 244 R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAk 323 (1172)
T KOG0926|consen 244 RPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAK 323 (1172)
T ss_pred CcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHH
Confidence 3444566688999999999999999999999999999999999999999998863 79999999999999999
Q ss_pred HHHhhcCCccCCeeeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc
Q 004875 87 MVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK 166 (726)
Q Consensus 87 ~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~ 166 (726)
||+.|+|. +|..|||+||++....+.|.|.|||+|+|++++.++.+ +.+|++|||||||||++++|++.++|.++...
T Consensus 324 RVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 324 RVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPL 401 (1172)
T ss_pred HHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHH
Confidence 99999998 99999999999999999999999999999999999864 67999999999999999999999999888765
Q ss_pred C----------CCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccc
Q 004875 167 K----------NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELS 236 (726)
Q Consensus 167 ~----------~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 236 (726)
| ..+|+|+||||+-.+.|.+--..+ +.+.+++.++. +.|||.++|-..
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LF--pi~pPlikVdA----RQfPVsIHF~kr---------------- 459 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLF--PIPPPLIKVDA----RQFPVSIHFNKR---------------- 459 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceec--CCCCceeeeec----ccCceEEEeccC----------------
Confidence 4 268999999999777666432211 12345666665 678888765210
Q ss_pred cccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC-----------------
Q 004875 237 SLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL----------------- 299 (726)
Q Consensus 237 ~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~----------------- 299 (726)
...+ .......-...||+..+. |.||||+.|..++..+++.|++.
T Consensus 460 -------T~~D---------Yi~eAfrKtc~IH~kLP~--G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~ 521 (1172)
T KOG0926|consen 460 -------TPDD---------YIAEAFRKTCKIHKKLPP--GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAF 521 (1172)
T ss_pred -------CCch---------HHHHHHHHHHHHhhcCCC--CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhc
Confidence 1111 112223556788988886 79999999999999999888500
Q ss_pred --------------------------------------------------------------------------------
Q 004875 300 -------------------------------------------------------------------------------- 299 (726)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (726)
T Consensus 522 ~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~ 601 (1172)
T KOG0926|consen 522 KELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFS 601 (1172)
T ss_pred cccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCC
Confidence
Q ss_pred CCCcEEEEecCCCCHHHHHHHhhccCCC-cEEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHh
Q 004875 300 SSFFKVHILHSSVDTEQALMAMKICKSH-RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQ 378 (726)
Q Consensus 300 ~~~~~v~~lh~~l~~~er~~~~~~f~~~-rkVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~ 378 (726)
...+.|+|||+-|+.++|.+++.....| |-+|||||+||+|+|||+|+||||||+.|.+.||..+++++|.+.|||||+
T Consensus 602 ~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkAS 681 (1172)
T KOG0926|consen 602 PGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKAS 681 (1172)
T ss_pred CCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccc
Confidence 0024589999999999999999876555 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCceEEEeechhhHh-hccCCCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHH
Q 004875 379 AEQRRGRTGRTCDGQVYRLVTKSFFG-TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDAL 457 (726)
Q Consensus 379 ~~QR~GRaGR~~~G~~~~L~s~~~~~-~l~~~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al 457 (726)
+.||+|||||++||+|||||+...|+ .++++..|||++.|.++++|+|++ ++.+++..|+|++||+..++..|.
T Consensus 682 adQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKs-----MnI~kVvnFPFPtpPd~~~L~~Ae 756 (1172)
T KOG0926|consen 682 ADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKS-----MNIDKVVNFPFPTPPDRSALEKAE 756 (1172)
T ss_pred cchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHh-----cCccceecCCCCCCccHHHHHHHH
Confidence 99999999999999999999999997 799999999999999999999964 566667778999999999999999
Q ss_pred HHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccC-------C----
Q 004875 458 DLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILH-------P---- 526 (726)
Q Consensus 458 ~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~-------p---- 526 (726)
..|..+||||.+ | .+|++|+.|+.||+.|+++|||+.+...+|+.-.+.++++||++. +|+. |
T Consensus 757 r~L~~LgALd~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e-~~i~~~~ll~n~~~r~ 830 (1172)
T KOG0926|consen 757 RRLKALGALDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYE-VLIVAASLLPNPLIRE 830 (1172)
T ss_pred HHHHHhcccccc---C--CcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccc-hhhhhhhccccccccc
Confidence 999999999983 6 599999999999999999999999999999999999999999764 3321 1
Q ss_pred CCchH--------------HHHHHhccccCCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 004875 527 FGDDA--------------LFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKV 592 (726)
Q Consensus 527 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 592 (726)
++.++ ...+.+.++..+.++ . +.=.+|-+.++.|......+
T Consensus 831 ~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~r--f--~~l~sd~l~Ll~Av~a~ey~--------------------- 885 (1172)
T KOG0926|consen 831 FEPEEKDLIKDDETVEDKELKKRRREKSKAARSR--F--SNLDSDALVLLSAVSAAEYA--------------------- 885 (1172)
T ss_pred CCcchhhccccccccccHHHHHHHHHHHHHHHhh--h--ccCCccHHHHHHHHHHHHhh---------------------
Confidence 11111 111111112111110 0 00002444444444444332
Q ss_pred ccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHh
Q 004875 593 TASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHR 631 (726)
Q Consensus 593 ~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~ 631 (726)
+....||..|||..++|.+++++|.||..++.+
T Consensus 886 ------~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~ 918 (1172)
T KOG0926|consen 886 ------ENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNH 918 (1172)
T ss_pred ------hhcchhHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 234559999999999999999999999998874
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8.4e-81 Score=725.79 Aligned_cols=440 Identities=28% Similarity=0.352 Sum_probs=388.9
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC--CcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~--~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
|||+++..++++++.+|+++|++|+|||||||++|+++++... ++|+|++|||++|+++++++++++++.+|..|||.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 7999999999999999999999999999999999999998643 48999999999999999999999999999999999
Q ss_pred eccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccCCCHH
Q 004875 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADIT 182 (726)
Q Consensus 104 v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSATl~~~ 182 (726)
+++++..+.+++|+|+|+|+|++++..++ .+.+|++|||||+|||++++|+++++++.+.. .++++|+|+||||++.+
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d~-~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDDP-ELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhCc-ccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999888899999999999999998764 57799999999999999999999999888765 57899999999999999
Q ss_pred HHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHH
Q 004875 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIH 262 (726)
Q Consensus 183 ~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~ 262 (726)
.+.+||++ .+++.+++ +.|+++++|++... .......+.
T Consensus 160 ~l~~~l~~------~~vI~~~g----r~~pVe~~y~~~~~-------------------------------~~~~~~~v~ 198 (819)
T TIGR01970 160 RLSSLLPD------APVVESEG----RSFPVEIRYLPLRG-------------------------------DQRLEDAVS 198 (819)
T ss_pred HHHHHcCC------CcEEEecC----cceeeeeEEeecch-------------------------------hhhHHHHHH
Confidence 99999864 34555655 45777776643100 000111122
Q ss_pred HHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC-CCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccccccc
Q 004875 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESS 340 (726)
Q Consensus 263 ~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~-~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~G 340 (726)
..+..+.... .|++|||+||+++|+.+++.|... ..++.+.++||+|++++|.++++.|++|+ ||||||||||+|
T Consensus 199 ~~l~~~l~~~---~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 199 RAVEHALASE---TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHhc---CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 2333333222 379999999999999999999752 34789999999999999999999999887 999999999999
Q ss_pred ccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHhhccCCCCCcccccChH
Q 004875 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLR 420 (726)
Q Consensus 341 Idip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~l~~~~~pei~r~~L~ 420 (726)
||||+|+||||+|++|...||+.++++.+.+.||||++|.||+|||||.++|.||+||++++|..|.++..|||+|++|+
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~ 355 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLS 355 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhh
Q 004875 421 LQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKF 500 (726)
Q Consensus 421 ~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~ 500 (726)
+++|+++.++ +.++..| +|+|||+..++..|++.|..+||||. + | +||++|+.|++||++|++|+||+.+
T Consensus 356 ~~~L~l~~~g---~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~-~--~--~lT~~G~~~~~lp~~p~l~~~ll~~ 425 (819)
T TIGR01970 356 GLALELAQWG---AKDPSDL--RWLDAPPSVALAAARQLLQRLGALDA-Q--G--RLTAHGKAMAALGCHPRLAAMLLSA 425 (819)
T ss_pred HHHHHHHHcC---CCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCC-C--C--CcCHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999998665 3344445 89999999999999999999999997 3 6 5999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhccCC
Q 004875 501 GEIGMLREGILLGILMDTQP 520 (726)
Q Consensus 501 ~~~~c~~e~l~i~a~ls~~~ 520 (726)
..+||..++++|||+|+..+
T Consensus 426 ~~~~~~~~~~~iaa~ls~~~ 445 (819)
T TIGR01970 426 HSTGLAALACDLAALLEERG 445 (819)
T ss_pred hhcCCHHHHHHHHHHHcCCC
Confidence 99999999999999999875
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.2e-78 Score=704.19 Aligned_cols=440 Identities=25% Similarity=0.323 Sum_probs=383.3
Q ss_pred CCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC--CcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~--~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.+|||+++..++++++.+++++|++|+|||||||++|+++++... ++|+|++|||++|.+++++++.+++..+|..||
T Consensus 2 ~~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 2 SSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 359999999999999999999999999999999999999998653 489999999999999999999999999999999
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccCCC
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATAD 180 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSATl~ 180 (726)
|.+++++..+..++|+|+|+|+|++++..++ .+.++++|||||+|||++++|+++++++.++. .++++|+|+||||++
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~-~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCC-CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 9999999888899999999999999988764 57899999999999999999999999888765 478999999999999
Q ss_pred HHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHH
Q 004875 181 ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKL 260 (726)
Q Consensus 181 ~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~l 260 (726)
.+.+++||.+ .+++.+++ +.|+++.+|+... .. ....+.
T Consensus 161 ~~~l~~~~~~------~~~I~~~g----r~~pV~~~y~~~~-----------------------~~--------~~~~~~ 199 (812)
T PRK11664 161 NDRLQQLLPD------APVIVSEG----RSFPVERRYQPLP-----------------------AH--------QRFDEA 199 (812)
T ss_pred HHHHHHhcCC------CCEEEecC----ccccceEEeccCc-----------------------hh--------hhHHHH
Confidence 9999999864 34555555 4567776664310 00 001111
Q ss_pred HHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC-CCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccccc
Q 004875 261 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAE 338 (726)
Q Consensus 261 i~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~-~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae 338 (726)
+...+..+.... .|++|||+||+++|+.+++.|.. ...++.+.++||+++.++|.++++.|++|+ ||||||||||
T Consensus 200 v~~~l~~~l~~~---~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAE 276 (812)
T PRK11664 200 VARATAELLRQE---SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAE 276 (812)
T ss_pred HHHHHHHHHHhC---CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHH
Confidence 222233333222 37999999999999999999985 335689999999999999999999998887 9999999999
Q ss_pred ccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHhhccCCCCCcccccC
Q 004875 339 SSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLS 418 (726)
Q Consensus 339 ~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~l~~~~~pei~r~~ 418 (726)
+|||||+|++|||+|++|...||+.++++.+.+.||||++|.||+|||||.++|.||+||++++|..++++..|||+|++
T Consensus 277 rsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~d 356 (812)
T PRK11664 277 TSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSD 356 (812)
T ss_pred hcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHH
Q 004875 419 LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVL 498 (726)
Q Consensus 419 L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~ 498 (726)
|++++|.++.++ +.++..| +|+|||+..++..|++.|..+||||. + | +||++|+.|++||++|++|+||+
T Consensus 357 L~~~~L~l~~~g---~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~-~--g--~lT~~G~~m~~lp~~Prla~~ll 426 (812)
T PRK11664 357 LSGLLLELLQWG---CHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDG-Q--G--RLTARGRKMAALGNDPRLAAMLV 426 (812)
T ss_pred hHHHHHHHHHcC---CCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCC-C--C--CcCHHHHHHHhcCCchHHHHHHH
Confidence 999999998665 3344455 99999999999999999999999997 3 6 59999999999999999999999
Q ss_pred hhcccCCHH--HHHHHHHHhcc
Q 004875 499 KFGEIGMLR--EGILLGILMDT 518 (726)
Q Consensus 499 ~~~~~~c~~--e~l~i~a~ls~ 518 (726)
.+.++||.. .+..+||+|+.
T Consensus 427 ~a~~~~~~~l~~a~~laall~e 448 (812)
T PRK11664 427 AAKEDDEAALATAAKLAAILEE 448 (812)
T ss_pred HHHhcCchhhHHHHHHHHhhcc
Confidence 999998653 56677777764
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1e-58 Score=507.39 Aligned_cols=557 Identities=27% Similarity=0.406 Sum_probs=452.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC-------CcEEEecchHHHHHHHHHHHHhhcC
Q 004875 21 PEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-------EPILCTQPRRFAVVAVAKMVAKGRN 93 (726)
Q Consensus 21 ~~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~-------~~Iivt~Prrlaa~~~a~~va~~~~ 93 (726)
.+|.+||+..+..++++++.+|++++|-++||+|||||+.++|||.-. ..++++||||+.+++++++++.+++
T Consensus 372 a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~ 451 (1282)
T KOG0921|consen 372 AQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERG 451 (1282)
T ss_pred hhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhH
Confidence 347789999999999999999999999999999999999999998643 3789999999999999999999999
Q ss_pred CccCCeeeeeeccccccC-CCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 004875 94 CELGGEVGYHIGHSKHLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (726)
Q Consensus 94 ~~lg~~Vgy~v~~~~~~~-~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lkl 172 (726)
+.+|..|||.+|+++.++ +...|.+||.|.+++.+.+. +..++|+|+||.|||..++||++.+++.+....+++++
T Consensus 452 e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 452 EEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred Hhhcccccccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhh
Confidence 999999999999998875 45679999999999998875 34899999999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccc--------------
Q 004875 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSL-------------- 238 (726)
Q Consensus 173 IlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~-------------- 238 (726)
++||||+|.+.|..||.. ++...+++ +.|++..+|++++...+....+........
T Consensus 529 ~lmsatIdTd~f~~~f~~------~p~~~~~g----rt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~ 598 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNFFSS------IPDVTVHG----RTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKG 598 (1282)
T ss_pred hhhhcccchhhhhhhhcc------ccceeecc----ccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcc
Confidence 999999999999999987 44445555 789999999999876655332221111000
Q ss_pred -cc--------cCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC-----CCCCcE
Q 004875 239 -RY--------CSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-----LSSFFK 304 (726)
Q Consensus 239 -~y--------~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~-----~~~~~~ 304 (726)
.+ +......+...........+++.++.+|....- .|.|+||+|++..+-.+...|.. ....+.
T Consensus 599 ~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i--~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ 676 (1282)
T KOG0921|consen 599 RNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNI--DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE 676 (1282)
T ss_pred cccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCC--ccceeeecCchHHhhhhhhhhhhhhhhccchhcc
Confidence 00 000000001111122234566666666654433 48999999999999998887753 245688
Q ss_pred EEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHc
Q 004875 305 VHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (726)
Q Consensus 305 v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~ 383 (726)
++++|+.++..++.++++....+. |+|++||++++++||.++++|||++..+.+.|-....+..+..+|.|+-+..||.
T Consensus 677 ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~ 756 (1282)
T KOG0921|consen 677 ILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRK 756 (1282)
T ss_pred cccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhc
Confidence 999999999999888888776565 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEeechhhHhhccCCCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHc
Q 004875 384 GRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHK 463 (726)
Q Consensus 384 GRaGR~~~G~~~~L~s~~~~~~l~~~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~l 463 (726)
||+||.++|.||++.+...|..+.++..||+.|.++.++.|..|. ..++....|+...+.||+.+++..+-..|.++
T Consensus 757 gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikl---l~l~SI~~fl~kal~~~p~dav~e~e~~l~~m 833 (1282)
T KOG0921|consen 757 GRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKL---LRLGSIGEFLGKALQPPPYDAVIEAEAVLREM 833 (1282)
T ss_pred ccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHH---HHhhhHHHHHhhccCCCchhhccCchHHHHHh
Confidence 999999999999999999999999999999999999999998874 34667788999999999999999999999999
Q ss_pred CccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccCCCCchH-HHHHHhccccC
Q 004875 464 RALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDA-LFAEYTGCYFG 542 (726)
Q Consensus 464 gal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~-~~~~~~~~~~~ 542 (726)
+++|.+ .++|++|+.++.+|++|.++|+++.+.-+||..-|+..|+.++.. .+|+. .+... .....+..|.
T Consensus 834 ~~ld~n-----~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~-~~~~~-~~~~~~rl~g~q~~~~- 905 (1282)
T KOG0921|consen 834 GALDAN-----DELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFP-TPFVP-REKHHSRLSGTQRKFA- 905 (1282)
T ss_pred hhhhcc-----CcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccc-ccccc-ccccccccccchhhcc-
Confidence 999983 379999999999999999999999999999999999888888754 34432 11110 0001111222
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHH
Q 004875 543 GDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELY 622 (726)
Q Consensus 543 ~~~~~~~~~~~~~~d~l~~~~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~ 622 (726)
+.+-+|+.+...+-+.|+....++ .-.+++||..++|+...|....+.+
T Consensus 906 ---------g~kfsdhva~~~v~q~~r~~~q~g----------------------a~~e~efc~r~~l~~~~~~~t~~a~ 954 (1282)
T KOG0921|consen 906 ---------GNKFSDHVAIVSVIQGYREAVQMG----------------------AAAEREFCERYSLSNPVLKMTDGAR 954 (1282)
T ss_pred ---------ccccccchhhhhhhhhhHHHhhhh----------------------hhhhhhHhHhhhhcchhhhhhhhhH
Confidence 222234444445566666543322 2347899999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 004875 623 EDILNAVHRFRP 634 (726)
Q Consensus 623 ~ql~~~~~~~~~ 634 (726)
.||+..|+...+
T Consensus 955 ~ql~d~L~q~~f 966 (1282)
T KOG0921|consen 955 RQLIDVLRQCSF 966 (1282)
T ss_pred HHHHHHHHhccC
Confidence 999999996653
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.2e-56 Score=506.50 Aligned_cols=395 Identities=22% Similarity=0.272 Sum_probs=292.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----------------CCCcEEEecchHHHHHHHHHHHHhhc
Q 004875 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----------------NMEPILCTQPRRFAVVAVAKMVAKGR 92 (726)
Q Consensus 30 ~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----------------~~~~Iivt~Prrlaa~~~a~~va~~~ 92 (726)
.+|+++++.+.+++++|++|+||||||+|+||++++. ....++|++|||.+|.+++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999998763 12379999999999999999988766
Q ss_pred CCccCCeeeeeecccccc-------CCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh
Q 004875 93 NCELGGEVGYHIGHSKHL-------SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL 165 (726)
Q Consensus 93 ~~~lg~~Vgy~v~~~~~~-------~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~ 165 (726)
|......+...+++.... ....+|+++|++..+. .+.++++|||||||||+..+|+++++++.+..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~-------~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~ 319 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLN-------KLFDYGTVIIDEVHEHDQIGDIIIAVARKHID 319 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccccc-------ccccCCEEEccccccCccchhHHHHHHHHhhh
Confidence 542111122223332221 2246799999874221 35589999999999999999999999987654
Q ss_pred cCCCceEEEeccCCC--HHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCC
Q 004875 166 KKNDLRVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (726)
Q Consensus 166 ~~~~lklIlmSATl~--~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~ 243 (726)
.. .|+++||||++ .+.+.+||++ ..++.++++ ..++++.+|++..... .
T Consensus 320 ~~--rq~ILmSATl~~dv~~l~~~~~~------p~~I~I~gr---t~~pV~~~yi~~~~~~----------~-------- 370 (675)
T PHA02653 320 KI--RSLFLMTATLEDDRDRIKEFFPN------PAFVHIPGG---TLFPISEVYVKNKYNP----------K-------- 370 (675)
T ss_pred hc--CEEEEEccCCcHhHHHHHHHhcC------CcEEEeCCC---cCCCeEEEEeecCccc----------c--------
Confidence 32 38999999994 5678888864 345556643 3477777765421100 0
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhc
Q 004875 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (726)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~ 323 (726)
....+ ..... ..++..+.......++++|||+||+++++.+++.|.....++.+.++||++++.+ +.++.
T Consensus 371 ~~~~y----~~~~k----~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~e--q~l~~ 440 (675)
T PHA02653 371 NKRAY----IEEEK----KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNID--EILEK 440 (675)
T ss_pred cchhh----hHHHH----HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHH--HHHHH
Confidence 00000 00000 1122222222222247999999999999999999986544689999999999864 33445
Q ss_pred c-CCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechh
Q 004875 324 C-KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (726)
Q Consensus 324 f-~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~ 401 (726)
| ++++ +||||||+||+|||||+|++|||+|+++.+. +..+. ..|+|+++|.||+|||||.++|.||+||+++
T Consensus 441 ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~ 514 (675)
T PHA02653 441 VYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLD 514 (675)
T ss_pred HhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHH
Confidence 4 5666 9999999999999999999999999887552 22322 4699999999999999999999999999998
Q ss_pred hHhhccCCCCCcccccC---hHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCC
Q 004875 402 FFGTLEDHECPAILRLS---LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPT 478 (726)
Q Consensus 402 ~~~~l~~~~~pei~r~~---L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT 478 (726)
++ .| |.|.+ |.+++|+++.++. +.+. + .|+|||+.+++..|++.|..+||+++ +||
T Consensus 515 ~~-------~p-I~ri~~~~L~~~vL~lk~~g~---~~~~-~--~~ldpP~~~~l~~A~~~L~~lga~~~-------~l~ 573 (675)
T PHA02653 515 LL-------KP-IKRIDSEFLHNYILYAKYFNL---TLPE-D--LFVIPSNLDRLRKTEEYIDSFNISIE-------KWY 573 (675)
T ss_pred Hh-------HH-HHHHhHHHHHHHHHHHHHcCC---CCcc-c--ccCCCCCHHHHHHHHHHHHHcCCCch-------hhh
Confidence 75 24 66666 8899999987663 3332 2 38999999999999999999998865 499
Q ss_pred Hh--HHHHHhCCCChHHHHHHHhhc
Q 004875 479 FY--GRLLASFSLSFDASVLVLKFG 501 (726)
Q Consensus 479 ~l--G~~l~~lpl~p~~~~~l~~~~ 501 (726)
.+ |+.|+-+ +.||+++.++
T Consensus 574 ~l~~~~~~~~~----~~~k~~~~g~ 594 (675)
T PHA02653 574 EILSNYYVNML----EYAKIYVKGG 594 (675)
T ss_pred hhhccccHHHH----HHhHHHhccc
Confidence 99 9999998 8999988763
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=9.3e-39 Score=374.85 Aligned_cols=419 Identities=14% Similarity=0.162 Sum_probs=275.2
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC--CCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~--~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
...++++|.++++.+.+++++++++|||||||+++.+.+++.. ..+++++.|.+.+|.+.++.+.... .+|..|+.
T Consensus 20 ~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v~~ 97 (674)
T PRK01172 20 DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR--SLGMRVKI 97 (674)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh--hcCCeEEE
Confidence 3457999999999999999999999999999988777766532 2356666688888888888776532 34556665
Q ss_pred eeccccc---cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccc---cHHHHHHHHHHhcCCCceEEEec
Q 004875 103 HIGHSKH---LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES---DLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 103 ~v~~~~~---~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~---d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++..+. .....+|+++||+.+...+...+..+.++++|||||+|+. .+. ..+..++..+...+++.|+|+||
T Consensus 98 ~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l-~d~~rg~~le~ll~~~~~~~~~~riI~lS 176 (674)
T PRK01172 98 SIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII-GDEDRGPTLETVLSSARYVNPDARILALS 176 (674)
T ss_pred EeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc-cCCCccHHHHHHHHHHHhcCcCCcEEEEe
Confidence 5543221 1246799999999998887766545669999999999953 222 23444455555567789999999
Q ss_pred cCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeecee--hhHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 004875 177 ATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRV--SYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (726)
Q Consensus 177 ATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~--~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (726)
||+ +.+.+++|++.. .+.... +..+.+. .|.. ..+...... .
T Consensus 177 ATl~n~~~la~wl~~~-------~~~~~~----r~vpl~~~i~~~~------------------~~~~~~~~~------~ 221 (674)
T PRK01172 177 ATVSNANELAQWLNAS-------LIKSNF----RPVPLKLGILYRK------------------RLILDGYER------S 221 (674)
T ss_pred CccCCHHHHHHHhCCC-------ccCCCC----CCCCeEEEEEecC------------------eeeeccccc------c
Confidence 998 788899998631 111111 1111111 1100 000000000 0
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCC-----------------------CcEEEEecC
Q 004875 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-----------------------FFKVHILHS 310 (726)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~-----------------------~~~v~~lh~ 310 (726)
... +..++..... .++++||||+++++++.++..|..... ...+..+||
T Consensus 222 ~~~----~~~~i~~~~~----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~ha 293 (674)
T PRK01172 222 QVD----INSLIKETVN----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHA 293 (674)
T ss_pred ccc----HHHHHHHHHh----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecC
Confidence 000 1122222211 247999999999999999888753211 125788999
Q ss_pred CCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC
Q 004875 311 SVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT 389 (726)
Q Consensus 311 ~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~ 389 (726)
+|+.++|..+++.|++|. +|||||+++++|||+|+..+||+ +. .+|+. ....++|.+++.||+|||||.
T Consensus 294 gl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~ 363 (674)
T PRK01172 294 GLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGN------GGIRYLSNMEIKQMIGRAGRP 363 (674)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc---eEeCC------CCceeCCHHHHHHHhhcCCCC
Confidence 999999999999999988 99999999999999999888884 11 11321 234578999999999999998
Q ss_pred C---CceEEEeec-hhhHh---hccCCCCCcccccChH------HHHHHHhhhh-cccCCChhhhc---ccCCCCCC---
Q 004875 390 C---DGQVYRLVT-KSFFG---TLEDHECPAILRLSLR------LQVLLICCAE-SKAISDPKVLL---QKALDPPY--- 449 (726)
Q Consensus 390 ~---~G~~~~L~s-~~~~~---~l~~~~~pei~r~~L~------~~iL~l~~~~-~~~l~~~~~~~---~~~l~pP~--- 449 (726)
+ .|.++.+.. +++++ .+.. ..|+-..+.|. ..+|...+.+ ..+..+...|+ |-+.++++
T Consensus 364 g~d~~g~~~i~~~~~~~~~~~~~~l~-~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l 442 (674)
T PRK01172 364 GYDQYGIGYIYAASPASYDAAKKYLS-GEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEI 442 (674)
T ss_pred CCCCcceEEEEecCcccHHHHHHHHc-CCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHH
Confidence 4 677776644 22222 2221 12322222221 1122222211 11122333332 12224322
Q ss_pred HHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhccc
Q 004875 450 PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI 503 (726)
Q Consensus 450 ~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~~ 503 (726)
.+.+..|++.|.+.|+|+. + +.+.+|++|+.++.+|++|..++.+..+...
T Consensus 443 ~~~v~~~l~~L~~~~~i~~-~--~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 493 (674)
T PRK01172 443 DYYIESSLKFLKENGFIKG-D--VTLRATRLGKLTSDLYIDPESALILKSAFDH 493 (674)
T ss_pred HHHHHHHHHHHHHCCCccc-C--CcEeECHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 5679999999999999986 3 4467999999999999999999998877654
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.7e-37 Score=364.92 Aligned_cols=423 Identities=19% Similarity=0.182 Sum_probs=276.4
Q ss_pred CcHHHHHHHHHH-HHcCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 27 Pi~~~Q~~il~~-i~~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
-++++|.++++. +.+++++++++|||||||..+...++.. ..++++++.|.+.++.+..+.+.. ++ ..|..|+-.
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~-~~-~~g~~v~~~ 100 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFER-FE-ELGVRVGIS 100 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHH-hh-cCCCEEEEE
Confidence 367999999998 7889999999999999997776665543 235677788888888888887774 32 224344433
Q ss_pred ecccc---ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccccc---HHHHHHHHHHhcCCCceEEEecc
Q 004875 104 IGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESD---LVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 104 v~~~~---~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d---~ll~~lk~l~~~~~~lklIlmSA 177 (726)
.+..+ ......+|+|+||+.+...+.+....+.++++|||||+| +..+.+ .+..++.++....++.|+|+|||
T Consensus 101 tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H-~l~d~~rg~~le~il~rl~~~~~~~qii~lSA 179 (737)
T PRK02362 101 TGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH-LIDSANRGPTLEVTLAKLRRLNPDLQVVALSA 179 (737)
T ss_pred eCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc-ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 22211 112457999999999988877654445699999999999 333332 23344555655678899999999
Q ss_pred CC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeece--ehhHHHHHHHhccCCCCccccccccccCCCCCCccccccC
Q 004875 178 TA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRR--VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (726)
Q Consensus 178 Tl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~--~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 254 (726)
|+ +.+.+++|++... +....+ ..+.. +++-.. ..+.. .... ......
T Consensus 180 Tl~n~~~la~wl~~~~-------~~~~~r----pv~l~~~v~~~~~-----------------~~~~~-~~~~-~~~~~~ 229 (737)
T PRK02362 180 TIGNADELADWLDAEL-------VDSEWR----PIDLREGVFYGGA-----------------IHFDD-SQRE-VEVPSK 229 (737)
T ss_pred cCCCHHHHHHHhCCCc-------ccCCCC----CCCCeeeEecCCe-----------------ecccc-cccc-CCCccc
Confidence 98 7889999986311 000000 00000 000000 00000 0000 000000
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCC---------------------------------
Q 004875 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS--------------------------------- 301 (726)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~--------------------------------- 301 (726)
.... ..+..... .++++||||+++++++.++..|.....
T Consensus 230 ~~~~----~~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 301 (737)
T PRK02362 230 DDTL----NLVLDTLE----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADC 301 (737)
T ss_pred hHHH----HHHHHHHH----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHH
Confidence 1111 22222221 137999999999999988877753210
Q ss_pred -CcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhH
Q 004875 302 -FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQA 379 (726)
Q Consensus 302 -~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~ 379 (726)
...+..+||+|++++|..+++.|++|. +|||||+++++|||+|++++||+. ..+||+..+ ..|+|.++|
T Consensus 302 l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g-----~~~~s~~~y 372 (737)
T PRK02362 302 VAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAG-----MQPIPVLEY 372 (737)
T ss_pred HHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCC-----ceeCCHHHH
Confidence 136889999999999999999999999 999999999999999999999963 334775432 257799999
Q ss_pred HHHcCCCCCCC---CceEEEeechh-h----HhhccCCCCCcccccC------hHHHHHHHhhhh-cccCCChhhhc-cc
Q 004875 380 EQRRGRTGRTC---DGQVYRLVTKS-F----FGTLEDHECPAILRLS------LRLQVLLICCAE-SKAISDPKVLL-QK 443 (726)
Q Consensus 380 ~QR~GRaGR~~---~G~~~~L~s~~-~----~~~l~~~~~pei~r~~------L~~~iL~l~~~~-~~~l~~~~~~~-~~ 443 (726)
.||+|||||.+ .|.|+.++... . |..+.. ..|+-..+. |...++...+.+ ..+..+..+|+ ..
T Consensus 373 ~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~-~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~T 451 (737)
T PRK02362 373 HQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW-ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEAT 451 (737)
T ss_pred HHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh-CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhC
Confidence 99999999983 49999998653 1 222221 123333332 444444433222 11122222332 12
Q ss_pred CCCCC------CHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhcc
Q 004875 444 ALDPP------YPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502 (726)
Q Consensus 444 ~l~pP------~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~ 502 (726)
|+..+ -.+.+..+++.|.+.|+|+. +. +.+.+|++|+.++.++++|..+..+..+..
T Consensus 452 f~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~-~~-~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 452 FYATQTDDTGRLERVVDDVLDFLERNGMIEE-DG-ETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred hHHhhccchHHHHHHHHHHHHHHHHCCCeee-cC-CeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 22222 23568999999999999987 31 446799999999999999999998887654
No 16
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-38 Score=339.95 Aligned_cols=316 Identities=20% Similarity=0.245 Sum_probs=234.5
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHh--HHHHHHHHhcC---------CCcEEEecchHHHHHHHHHHHHhhcCCcc
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAEN---------MEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKT--t~ip~~lle~~---------~~~Iivt~Prrlaa~~~a~~va~~~~~~l 96 (726)
.+++|.+.++.++.+++++..+.|||||| +++|.+..-.. ...++|..|+|.+|.|+.+...+ ++..+
T Consensus 114 PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~-~~~~~ 192 (519)
T KOG0331|consen 114 PTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE-FGKSL 192 (519)
T ss_pred CchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH-HcCCC
Confidence 47899999999999999999999999999 55555533221 12577888888888887765544 33333
Q ss_pred C--Ceeeee----eccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc-CCC
Q 004875 97 G--GEVGYH----IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KND 169 (726)
Q Consensus 97 g--~~Vgy~----v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~-~~~ 169 (726)
+ ..+-|. -.+......+.+|+++|||+|++++..+.+.+.+++++|+|||| |+++++|-..+-+.+-.. +++
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~~ 271 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRPD 271 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCCc
Confidence 3 111111 02334456779999999999999999998899999999999999 999999999998888888 566
Q ss_pred ceEEEeccCCCHH--HHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCC
Q 004875 170 LRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (726)
Q Consensus 170 lklIlmSATl~~~--~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 247 (726)
.|+++.|||.+.+ .++.-|-. .+..+.+....... .. .-+.++
T Consensus 272 rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~--a~-----~~i~qi-------------------------- 316 (519)
T KOG0331|consen 272 RQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELK--AN-----HNIRQI-------------------------- 316 (519)
T ss_pred ccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhh--hh-----cchhhh--------------------------
Confidence 6899999998654 44444422 22222221110000 00 000000
Q ss_pred ccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC
Q 004875 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (726)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~ 327 (726)
.+..-.......+..++..+. .+.++++||||.++..|+++...|+.. ++.+..+||+.++.||..+++.|++|
T Consensus 317 -ve~~~~~~K~~~l~~lL~~~~---~~~~~KvIIFc~tkr~~~~l~~~l~~~--~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 317 -VEVCDETAKLRKLGKLLEDIS---SDSEGKVIIFCETKRTCDELARNLRRK--GWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred -hhhcCHHHHHHHHHHHHHHHh---ccCCCcEEEEecchhhHHHHHHHHHhc--CcceeeecccccHHHHHHHHHhcccC
Confidence 000012222334445555555 233579999999999999999999843 48899999999999999999999999
Q ss_pred c-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 328 r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
+ .||||||+|++|+|||+|++||+ ||+|.+++.| +||+||+||. +.|.+|.+++...+.
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~vEdY----------VHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNVEDY----------VHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred CcceEEEcccccccCCCccccEEEe--------CCCCCCHHHH----------HhhcCccccCCCCceEEEEEeHHHHH
Confidence 9 99999999999999999999999 9999999988 9999999997 789999999987664
No 17
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.3e-36 Score=353.92 Aligned_cols=432 Identities=16% Similarity=0.107 Sum_probs=271.3
Q ss_pred CcHHHHHHHHHH-HHcCCcEEEEcCCCChHhHHHHHHHHhc---CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 27 Pi~~~Q~~il~~-i~~~~~vii~a~TGSGKTt~ip~~lle~---~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
-++++|.++++. +.+++++++++|||||||..+...+++. ...+++++.|.+.++.+..+++... . .+|..|+.
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~-~-~~g~~v~~ 100 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW-E-KLGLRVAM 100 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH-h-hcCCEEEE
Confidence 367999999986 7899999999999999997765555432 2346777778888888888777642 1 24444554
Q ss_pred eecccc---ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 103 HIGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 103 ~v~~~~---~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
..+..+ .....++|+|+||+.+...+......+.++++|||||+|. ..+.+....+...+.....+.|+|+||||+
T Consensus 101 ~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~~rg~~le~il~~l~~~~qiI~lSATl 179 (720)
T PRK00254 101 TTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSYDRGATLEMILTHMLGRAQILGLSATV 179 (720)
T ss_pred EeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCccchHHHHHHHHhcCcCCcEEEEEccC
Confidence 433221 1224679999999999888776544567999999999993 333332222222222334578999999998
Q ss_pred -CHHHHHHHHhhcCCCcceeEEEecCCCccceeece--ehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChh
Q 004875 180 -DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRR--VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (726)
Q Consensus 180 -~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~--~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (726)
|++.+.+|++.. .+.... +..+.. +.+ . ...+... . ........
T Consensus 180 ~n~~~la~wl~~~-------~~~~~~----rpv~l~~~~~~-~-----------------~~~~~~~--~--~~~~~~~~ 226 (720)
T PRK00254 180 GNAEELAEWLNAE-------LVVSDW----RPVKLRKGVFY-Q-----------------GFLFWED--G--KIERFPNS 226 (720)
T ss_pred CCHHHHHHHhCCc-------cccCCC----CCCcceeeEec-C-----------------CeeeccC--c--chhcchHH
Confidence 789999998631 110000 001100 000 0 0000000 0 00000011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC-----------------------C--------CCcEE
Q 004875 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-----------------------S--------SFFKV 305 (726)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~-----------------------~--------~~~~v 305 (726)
.. ..+...... ++++||||++++.++.++..|... . -...+
T Consensus 227 ~~----~~~~~~i~~----~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv 298 (720)
T PRK00254 227 WE----SLVYDAVKK----GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGV 298 (720)
T ss_pred HH----HHHHHHHHh----CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCE
Confidence 11 222222221 368999999999998776555310 0 01358
Q ss_pred EEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcC
Q 004875 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (726)
Q Consensus 306 ~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~G 384 (726)
.++||+|++++|..+++.|++|. +|||||+++++|||+|++++||..+ .+|+ . +...+++.+++.||+|
T Consensus 299 ~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~-----~~~~~~~~~~~~Qm~G 368 (720)
T PRK00254 299 AFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-N-----FGWEDIPVLEIQQMMG 368 (720)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-C-----CCceeCCHHHHHHhhh
Confidence 99999999999999999999999 9999999999999999999999633 2243 1 2233457789999999
Q ss_pred CCCCC---CCceEEEeechhh----HhhccCCCCCccccc------ChHHHHHHHhhhhcccCCChh---hhcc---cCC
Q 004875 385 RTGRT---CDGQVYRLVTKSF----FGTLEDHECPAILRL------SLRLQVLLICCAESKAISDPK---VLLQ---KAL 445 (726)
Q Consensus 385 RaGR~---~~G~~~~L~s~~~----~~~l~~~~~pei~r~------~L~~~iL~l~~~~~~~l~~~~---~~~~---~~l 445 (726)
||||. ..|.++.+.+..+ ++.+.. ..||-+.+ .|...++..... ..+.... +++. -+.
T Consensus 369 RAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~-~~pe~l~s~l~~es~l~~~ll~~i~~--~~~~~~~~~~~~l~~Tf~~~ 445 (720)
T PRK00254 369 RAGRPKYDEVGEAIIVATTEEPSKLMERYIF-GKPEKLFSMLSNESAFRSQVLALITN--FGVSNFKELVNFLERTFYAH 445 (720)
T ss_pred ccCCCCcCCCceEEEEecCcchHHHHHHHHh-CCchhhhccCCchHHHHHHHHHHHHh--CCCCCHHHHHHHHHhCHHHH
Confidence 99997 4699998886432 333311 12222211 233334433221 1222221 2221 112
Q ss_pred CCCC----HHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhcc----cCCHHHHHHHHHHh
Q 004875 446 DPPY----PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE----IGMLREGILLGILM 516 (726)
Q Consensus 446 ~pP~----~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~----~~c~~e~l~i~a~l 516 (726)
..|+ .+.+..++..|.+.|.|+. +.++.+.+|++|+.++.++++|..++.+..+.. ......++-+.+..
T Consensus 446 ~~~~~~~~~~~v~~~l~~L~~~~~i~~-~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~ 523 (720)
T PRK00254 446 QRKDLYSLEEKAKEIVYFLLENEFIDI-DLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAST 523 (720)
T ss_pred hhcChHhHHHHHHHHHHHHHHCCCeEE-cCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCC
Confidence 2233 3467888999999999986 434567899999999999999999998876543 23455555555443
No 18
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-38 Score=318.88 Aligned_cols=312 Identities=22% Similarity=0.313 Sum_probs=226.8
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC----C-cEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM----E-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~----~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
.+++|.++++.++.|++||..|+||||||..+...+++..+ . ..++..|.|.+|.|++... +-+|..+|-.+..
T Consensus 84 PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr~~~ 162 (476)
T KOG0330|consen 84 PTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGLRVAV 162 (476)
T ss_pred CchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCeEEEE
Confidence 36899999999999999999999999999666666554322 1 4555566666677777654 3344444443333
Q ss_pred eeccc------cccCCCCeEEEEChHHHHHHHH-hcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 103 HIGHS------KHLSERSKIVFKTAGVLLDEMR-DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 103 ~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~-~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
.+++. ......++|+|+|||.|.+.+. .+.+++..++++|+|||| |.++.||...+-+.+...+++.|.+++
T Consensus 163 lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt~Lf 241 (476)
T KOG0330|consen 163 LVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQTFLF 241 (476)
T ss_pred EecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccceEEEE
Confidence 34332 3457889999999999999998 567777799999999999 999999998887777777788999999
Q ss_pred ccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccCh
Q 004875 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (726)
Q Consensus 176 SATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 255 (726)
||||..+ ..+.... .-..++.+. ++.. |. -++. +...|..-+..+. +
T Consensus 242 sATMt~k-v~kL~ra-sl~~p~~v~-~s~k-----y~----tv~~---------------lkQ~ylfv~~k~K-~----- 288 (476)
T KOG0330|consen 242 SATMTKK-VRKLQRA-SLDNPVKVA-VSSK-----YQ----TVDH---------------LKQTYLFVPGKDK-D----- 288 (476)
T ss_pred Eeecchh-hHHHHhh-ccCCCeEEe-ccch-----hc----chHH---------------hhhheEecccccc-c-----
Confidence 9999633 2222221 111122221 1111 10 0111 1111111111110 0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEc
Q 004875 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (726)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaT 334 (726)
..+.++.+... ++.+||||++....+.++-.|+.+ ++...++||.|++..|.-.++.|+.+. .|++||
T Consensus 289 -------~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~l--g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T 357 (476)
T KOG0330|consen 289 -------TYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNL--GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT 357 (476)
T ss_pred -------hhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhc--CcceecccchhhHHHHHHHHHHHhccCCcEEEec
Confidence 11222222222 379999999999999999999954 599999999999999999999999887 999999
Q ss_pred ccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 335 niae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
|+|++|+|||.|++||| ||.|....+| +||+||+||+ ++|+++.|++.-+.
T Consensus 358 DVaSRGLDip~Vd~VVN--------yDiP~~skDY----------IHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 358 DVASRGLDIPHVDVVVN--------YDIPTHSKDY----------IHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred chhcccCCCCCceEEEe--------cCCCCcHHHH----------HHHcccccccCCCcceEEEEehhhh
Confidence 99999999999999999 9999988777 9999999999 78999999998443
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-36 Score=342.21 Aligned_cols=310 Identities=20% Similarity=0.228 Sum_probs=220.0
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC-----CcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~-----~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
++++|.++++.+.++++++++||||||||+.+...+++... ..++++.|++.+|.++++.+........+..+..
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~ 106 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLT 106 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 67899999999999999999999999999887777765421 2455566777777787776554321111122222
Q ss_pred eeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 103 HIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 103 ~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
..+.. .....+++|+|+|||+|.+.+..+.+.+.++++||+|||| ++++..|...+...+...+++.+++++|
T Consensus 107 ~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q~ll~S 185 (460)
T PRK11776 107 LCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQTLLFS 185 (460)
T ss_pred EECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccEEEEEE
Confidence 11111 1234678999999999999998877777899999999999 6777777766665555566778999999
Q ss_pred cCCCHH--HHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccC
Q 004875 177 ATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (726)
Q Consensus 177 ATl~~~--~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 254 (726)
||++.. .+...+.. .+..+. +....... .++..| ... . .
T Consensus 186 AT~~~~~~~l~~~~~~----~~~~i~-~~~~~~~~--~i~~~~-----------------------~~~--------~-~ 226 (460)
T PRK11776 186 ATYPEGIAAISQRFQR----DPVEVK-VESTHDLP--AIEQRF-----------------------YEV--------S-P 226 (460)
T ss_pred ecCcHHHHHHHHHhcC----CCEEEE-ECcCCCCC--CeeEEE-----------------------EEe--------C-c
Confidence 998643 33333321 112221 11110000 000000 000 0 0
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEE
Q 004875 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (726)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlva 333 (726)
....+ .+..+..... .+++||||+++++++.+++.|... ++.+..+||++++.+|..+++.|++|. +||||
T Consensus 227 ~~k~~----~l~~ll~~~~--~~~~lVF~~t~~~~~~l~~~L~~~--~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVa 298 (460)
T PRK11776 227 DERLP----ALQRLLLHHQ--PESCVVFCNTKKECQEVADALNAQ--GFSALALHGDLEQRDRDQVLVRFANRSCSVLVA 298 (460)
T ss_pred HHHHH----HHHHHHHhcC--CCceEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 01111 2222222222 368999999999999999999854 588999999999999999999999998 99999
Q ss_pred cccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 334 Tniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
|+++++|||+|++++||+ ||.+.+...| .||+|||||. ..|.||.|+++.+.
T Consensus 299 Tdv~~rGiDi~~v~~VI~--------~d~p~~~~~y----------iqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 299 TDVAARGLDIKALEAVIN--------YELARDPEVH----------VHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ecccccccchhcCCeEEE--------ecCCCCHhHh----------hhhcccccCCCCcceEEEEEchhHH
Confidence 999999999999999999 9988866665 9999999999 67999999998754
No 20
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-36 Score=335.86 Aligned_cols=314 Identities=19% Similarity=0.231 Sum_probs=218.3
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC------------CCcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~------------~~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
..+++|.++++.+.++++++++||||||||..+...+++.. ...++++.|++.+|.++.+.+.. +..
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~-l~~ 108 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP-LAQ 108 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH-Hhc
Confidence 34789999999999999999999999999977665554311 13577778888888887665433 222
Q ss_pred ccCCeeeeeecccc------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcC-
Q 004875 95 ELGGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK- 167 (726)
Q Consensus 95 ~lg~~Vgy~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~- 167 (726)
..|..++..++... ......+|+|+||++|++.+....+.+.++++||||||| +.++.+|...+...+....
T Consensus 109 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~i~~i~~~~~~ 187 (423)
T PRK04837 109 ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKDIRWLFRRMPP 187 (423)
T ss_pred cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHHHHHHHHhCCC
Confidence 33434444333221 234567999999999999998877778899999999999 6666666655433322222
Q ss_pred -CCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCC
Q 004875 168 -NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (726)
Q Consensus 168 -~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 246 (726)
...+.+++|||++.......+..+..+ ..+...+.............|.
T Consensus 188 ~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~~~~---------------------------- 237 (423)
T PRK04837 188 ANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEELFYP---------------------------- 237 (423)
T ss_pred ccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEEEeC----------------------------
Confidence 234578999999755433333322222 1111111100000000000000
Q ss_pred CccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC
Q 004875 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (726)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~ 326 (726)
........ +..+..... .+++||||+++..++.+++.|.. .++.+..+||++++++|..+++.|++
T Consensus 238 ------~~~~k~~~----l~~ll~~~~--~~~~lVF~~t~~~~~~l~~~L~~--~g~~v~~lhg~~~~~~R~~~l~~F~~ 303 (423)
T PRK04837 238 ------SNEEKMRL----LQTLIEEEW--PDRAIIFANTKHRCEEIWGHLAA--DGHRVGLLTGDVAQKKRLRILEEFTR 303 (423)
T ss_pred ------CHHHHHHH----HHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHh--CCCcEEEecCCCChhHHHHHHHHHHc
Confidence 00111112 222222222 36899999999999999999984 45889999999999999999999999
Q ss_pred Cc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 327 ~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
|+ +||||||++++|||+|+|++||+ ||+|.+...| .||+||+||. +.|.++.++++++..
T Consensus 304 g~~~vLVaTdv~~rGiDip~v~~VI~--------~d~P~s~~~y----------iqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 304 GDLDILVATDVAARGLHIPAVTHVFN--------YDLPDDCEDY----------VHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred CCCcEEEEechhhcCCCccccCEEEE--------eCCCCchhhe----------EeccccccCCCCCeeEEEEeCHHHHH
Confidence 99 99999999999999999999999 9999877776 9999999999 789999999987543
No 21
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.9e-36 Score=344.68 Aligned_cols=312 Identities=19% Similarity=0.223 Sum_probs=220.5
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc---------C-CCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------N-MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~---------~-~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.+++|.++++.+++++++|+++|||||||..+...++.. + ...++++.|++.+|.++.+.+... +...+
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~-~~~~~ 231 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF-GASSK 231 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH-hcccC
Confidence 679999999999999999999999999996544333221 1 124677778888888877765543 22222
Q ss_pred Ceeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 004875 98 GEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 98 ~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk 171 (726)
..+....+.. .......+|+|+|||+|++.+......+.++++||||||| |+++.+|...+.+.+...+++.+
T Consensus 232 i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 232 IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCCe
Confidence 2121111111 1234568999999999999998877777799999999999 88888888777776666778999
Q ss_pred EEEeccCCCHH--HHHHHHhhcCCCcceeEEEecCCC--ccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCC
Q 004875 172 VVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTN--QRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (726)
Q Consensus 172 lIlmSATl~~~--~~~~~f~~~~~~~~~~v~~~~~~~--~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 247 (726)
++++|||++.+ .+...+.. ..++.+ .+.... ........+..+
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~---~~~v~i-~vg~~~l~~~~~i~q~~~~~----------------------------- 357 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCK---EEPVHV-NVGSLDLTACHNIKQEVFVV----------------------------- 357 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhc---cCCEEE-EECCCccccCCCeeEEEEEE-----------------------------
Confidence 99999998643 33333221 111211 111000 000000000000
Q ss_pred ccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC
Q 004875 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (726)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~ 327 (726)
........+.+++..+.. ..+++||||+++++++.+++.|+. .++.+..+||++++++|..+++.|+++
T Consensus 358 -----~~~~k~~~L~~ll~~~~~----~~~k~LIF~~t~~~a~~l~~~L~~--~g~~~~~ihg~~~~~eR~~il~~F~~G 426 (545)
T PTZ00110 358 -----EEHEKRGKLKMLLQRIMR----DGDKILIFVETKKGADFLTKELRL--DGWPALCIHGDKKQEERTWVLNEFKTG 426 (545)
T ss_pred -----echhHHHHHHHHHHHhcc----cCCeEEEEecChHHHHHHHHHHHH--cCCcEEEEECCCcHHHHHHHHHHHhcC
Confidence 000111222233333221 246999999999999999999984 458889999999999999999999999
Q ss_pred c-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 328 r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
+ +|||||+++++|||||+|++||+ ||.|.+.+.| .||+||+||. ..|.||.++++++.
T Consensus 427 ~~~ILVaTdv~~rGIDi~~v~~VI~--------~d~P~s~~~y----------vqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 427 KSPIMIATDVASRGLDVKDVKYVIN--------FDFPNQIEDY----------VHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred CCcEEEEcchhhcCCCcccCCEEEE--------eCCCCCHHHH----------HHHhcccccCCCCceEEEEECcchH
Confidence 8 99999999999999999999999 9998866555 9999999999 78999999998654
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.3e-36 Score=334.87 Aligned_cols=318 Identities=23% Similarity=0.260 Sum_probs=226.8
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc---------CCCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~---------~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.++++|.++++.+.++++++++||||||||..+...+++. +..+++++.|++.+|.++++.+.... ...+
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~-~~~~ 101 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA-KHTH 101 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH-ccCC
Confidence 3578999999999999999999999999997665544432 12468888888888888777654322 1223
Q ss_pred Ceeeeeecc------ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 004875 98 GEVGYHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 98 ~~Vgy~v~~------~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk 171 (726)
..++...+. ......+.+|+|+|||+|++.+....+.+.++++||||||| ++++..|...+.......+...+
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~i~~~~~~~~q 180 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIETIAAETRWRKQ 180 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHHHHHhCccccE
Confidence 233322221 12334578999999999999998877777799999999999 77777766655555555566779
Q ss_pred EEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 004875 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (726)
Q Consensus 172 lIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (726)
++++|||++.+.+..+...+.. .++.+...+...... .+..+| . ..
T Consensus 181 ~~~~SAT~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~--~i~~~~-----------------------~--------~~ 226 (434)
T PRK11192 181 TLLFSATLEGDAVQDFAERLLN-DPVEVEAEPSRRERK--KIHQWY-----------------------Y--------RA 226 (434)
T ss_pred EEEEEeecCHHHHHHHHHHHcc-CCEEEEecCCccccc--CceEEE-----------------------E--------Ee
Confidence 9999999986655555544321 122222111110000 000000 0 00
Q ss_pred ccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EE
Q 004875 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KV 330 (726)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kV 330 (726)
+... ...+++..+..... .+++||||+++++++.+++.|.. .++.+..+||++++.+|..+++.|++|. +|
T Consensus 227 ~~~~----~k~~~l~~l~~~~~--~~~~lVF~~s~~~~~~l~~~L~~--~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~v 298 (434)
T PRK11192 227 DDLE----HKTALLCHLLKQPE--VTRSIVFVRTRERVHELAGWLRK--AGINCCYLEGEMVQAKRNEAIKRLTDGRVNV 298 (434)
T ss_pred CCHH----HHHHHHHHHHhcCC--CCeEEEEeCChHHHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHhCCCCcE
Confidence 0000 11233334433322 36899999999999999999985 4588999999999999999999999999 99
Q ss_pred EEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHhhc
Q 004875 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (726)
Q Consensus 331 lvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~~l 406 (726)
||||+++++|||+|+|++||+ ||.+.+...| .||+||+||. ..|.++.+++..++..+
T Consensus 299 LVaTd~~~~GiDip~v~~VI~--------~d~p~s~~~y----------iqr~GR~gR~g~~g~ai~l~~~~d~~~~ 357 (434)
T PRK11192 299 LVATDVAARGIDIDDVSHVIN--------FDMPRSADTY----------LHRIGRTGRAGRKGTAISLVEAHDHLLL 357 (434)
T ss_pred EEEccccccCccCCCCCEEEE--------ECCCCCHHHH----------hhcccccccCCCCceEEEEecHHHHHHH
Confidence 999999999999999999999 9988755555 9999999998 67999999988766433
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.5e-36 Score=333.83 Aligned_cols=312 Identities=19% Similarity=0.224 Sum_probs=218.8
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC-----------CCcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----------MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~-----------~~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
-.+++|.++++.+.+++++++++|||||||..+...+++.. ..+++++.|++.+|.++.+.+..... .
T Consensus 23 ~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~-~ 101 (456)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK-Y 101 (456)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhc-c
Confidence 35789999999999999999999999999976666554331 11477777877778888777665422 1
Q ss_pred cCCeeeeeecc------ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCC
Q 004875 96 LGGEVGYHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (726)
Q Consensus 96 lg~~Vgy~v~~------~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~ 169 (726)
.+..+...++. ........+|+|+||++|++.+....+.+.++++||||||| +.++..+...+.+.+.....+
T Consensus 102 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~~ 180 (456)
T PRK10590 102 LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPAK 180 (456)
T ss_pred CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHHHHHhCCcc
Confidence 12111111111 11234578999999999999988877777899999999999 777777766655555455567
Q ss_pred ceEEEeccCCCHH--HHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCC
Q 004875 170 LRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (726)
Q Consensus 170 lklIlmSATl~~~--~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 247 (726)
.+++++|||++.+ .+...+. ..+..+.+...... .........+.+
T Consensus 181 ~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~--~~~i~~~~~~~~---------------------------- 228 (456)
T PRK10590 181 RQNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTA--SEQVTQHVHFVD---------------------------- 228 (456)
T ss_pred CeEEEEeCCCcHHHHHHHHHHc--CCCeEEEEeccccc--ccceeEEEEEcC----------------------------
Confidence 8999999998753 3332221 11111111100000 000000000000
Q ss_pred ccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC
Q 004875 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (726)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~ 327 (726)
.... .+++..+.... ...++||||+++.+++.+++.|.. .++.+..+||++++++|..+++.|+++
T Consensus 229 ------~~~k----~~~l~~l~~~~--~~~~~lVF~~t~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~R~~~l~~F~~g 294 (456)
T PRK10590 229 ------KKRK----RELLSQMIGKG--NWQQVLVFTRTKHGANHLAEQLNK--DGIRSAAIHGNKSQGARTRALADFKSG 294 (456)
T ss_pred ------HHHH----HHHHHHHHHcC--CCCcEEEEcCcHHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 0001 12233333222 236899999999999999999984 458899999999999999999999999
Q ss_pred c-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 328 r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
+ +|||||+++++|||+|+|++||+ ||.|.....| +||+|||||. ..|.|+.+++.++..
T Consensus 295 ~~~iLVaTdv~~rGiDip~v~~VI~--------~~~P~~~~~y----------vqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 295 DIRVLVATDIAARGLDIEELPHVVN--------YELPNVPEDY----------VHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred CCcEEEEccHHhcCCCcccCCEEEE--------eCCCCCHHHh----------hhhccccccCCCCeeEEEEecHHHHH
Confidence 9 99999999999999999999999 9998866555 9999999999 679999999876543
No 24
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-36 Score=336.27 Aligned_cols=313 Identities=26% Similarity=0.308 Sum_probs=230.1
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC-----C-c-EEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----E-P-ILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~-----~-~-Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
.+++|.++++.+..++++++.++||||||..+...+++... . . .++..|+|.+|.|+++.+........+..+
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~ 131 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRV 131 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccE
Confidence 57999999999999999999999999999777777666422 1 1 566666667777776655442211101122
Q ss_pred eeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 101 GYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 101 gy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
...++.. .....+.+|+|+|||+|++++....+.+.++.++|+|||| |+++..|...+.+.+...+++.++++
T Consensus 132 ~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~p~~~qtll 210 (513)
T COG0513 132 AVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILKALPPDRQTLL 210 (513)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhCCcccEEEE
Confidence 2222221 2334469999999999999999888888899999999999 89999999999888888888999999
Q ss_pred eccCCCHHHHHHHHhhcCCCcceeEEEecCCCc-cceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 004875 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQ-RTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (726)
Q Consensus 175 mSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~-~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (726)
+|||++. .+..+-...-. .++ .+.+..... ...-.+..+ |.... .
T Consensus 211 fSAT~~~-~i~~l~~~~l~-~p~-~i~v~~~~~~~~~~~i~q~-----------------------~~~v~--------~ 256 (513)
T COG0513 211 FSATMPD-DIRELARRYLN-DPV-EIEVSVEKLERTLKKIKQF-----------------------YLEVE--------S 256 (513)
T ss_pred EecCCCH-HHHHHHHHHcc-CCc-EEEEccccccccccCceEE-----------------------EEEeC--------C
Confidence 9999987 45555544322 222 111211000 000000000 00000 0
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEE
Q 004875 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (726)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlv 332 (726)
.... .+++..+...... +++||||++...++.++..|... ++.+..+||++++++|.++++.|++++ +|+|
T Consensus 257 ~~~k----~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLV 328 (513)
T COG0513 257 EEEK----LELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELRVLV 328 (513)
T ss_pred HHHH----HHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 0001 1344444443332 47999999999999999999854 499999999999999999999999999 9999
Q ss_pred EcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 333 aTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
|||+|++|||||+|.+||+ ||.|...+.| .||+||+||. ..|.++.++++.
T Consensus 329 aTDvaaRGiDi~~v~~Vin--------yD~p~~~e~y----------vHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 329 ATDVAARGLDIPDVSHVIN--------YDLPLDPEDY----------VHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred EechhhccCCccccceeEE--------ccCCCCHHHh----------eeccCccccCCCCCeEEEEeCcH
Confidence 9999999999999999999 9999988887 9999999999 789999999864
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.6e-35 Score=340.18 Aligned_cols=311 Identities=21% Similarity=0.262 Sum_probs=222.7
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC-----CCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~-----~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.++++|.++++.+.+++++|+.||||||||.++...+++.. ...++++.|++.+|.|+++.+........+..+.
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~ 107 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVV 107 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 46899999999999999999999999999987776665432 2367888888888899988776654322233333
Q ss_pred eeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 102 YHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 102 y~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
...+.. ......++|+|+||+.|++.+....+.+.++++|||||||+ +++..|...+...+...+.+.+++++
T Consensus 108 ~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~di~~Il~~lp~~~q~llf 186 (629)
T PRK11634 108 ALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIEDVETIMAQIPEGHQTALF 186 (629)
T ss_pred EEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHHHHHHHHhCCCCCeEEEE
Confidence 222221 12345789999999999999988877788999999999994 56666766666555556677899999
Q ss_pred ccCCCHHH--HHH-HHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccc
Q 004875 176 SATADITK--YRD-YFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (726)
Q Consensus 176 SATl~~~~--~~~-~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (726)
|||++... +.. |+.. +..+ .+....... ..+.. .|....
T Consensus 187 SAT~p~~i~~i~~~~l~~-----~~~i-~i~~~~~~~-~~i~q-----------------------~~~~v~-------- 228 (629)
T PRK11634 187 SATMPEAIRRITRRFMKE-----PQEV-RIQSSVTTR-PDISQ-----------------------SYWTVW-------- 228 (629)
T ss_pred EccCChhHHHHHHHHcCC-----CeEE-EccCccccC-CceEE-----------------------EEEEec--------
Confidence 99986432 222 2221 1111 111110000 00000 000000
Q ss_pred cChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEE
Q 004875 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVI 331 (726)
Q Consensus 253 ~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVl 331 (726)
.....+ .+...+. ... ...+||||+++.+++.+++.|.. .++.+..+||+|++.+|.++++.|++++ +||
T Consensus 229 -~~~k~~---~L~~~L~-~~~--~~~~IVF~~tk~~a~~l~~~L~~--~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~IL 299 (629)
T PRK11634 229 -GMRKNE---ALVRFLE-AED--FDAAIIFVRTKNATLEVAEALER--NGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 (629)
T ss_pred -hhhHHH---HHHHHHH-hcC--CCCEEEEeccHHHHHHHHHHHHh--CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEE
Confidence 000111 2222222 222 25899999999999999999984 4588999999999999999999999999 999
Q ss_pred EEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 332 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 332 vaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
|||+++++|||+|+|++||+ ||.|.+.+.| .||+|||||. +.|.++.++++.+.
T Consensus 300 VATdv~arGIDip~V~~VI~--------~d~P~~~e~y----------vqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 300 IATDVAARGLDVERISLVVN--------YDIPMDSESY----------VHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred EEcchHhcCCCcccCCEEEE--------eCCCCCHHHH----------HHHhccccCCCCcceEEEEechHHH
Confidence 99999999999999999999 9998866555 9999999999 67999999987554
No 26
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-35 Score=336.38 Aligned_cols=311 Identities=18% Similarity=0.252 Sum_probs=213.4
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc------------CCCcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE------------NMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~------------~~~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
.+++|.++++.+.+++++++++|||||||..+...++.. ....++++.|++.+|.++.+.+.. ++..
T Consensus 144 ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~-l~~~ 222 (518)
T PLN00206 144 PTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV-LGKG 222 (518)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH-HhCC
Confidence 578999999999999999999999999996655554431 112466666666666776655443 2222
Q ss_pred cCCeeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCC
Q 004875 96 LGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (726)
Q Consensus 96 lg~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~ 169 (726)
++..+...++.+ .....+.+|+|+|||+|++.+....+.+.++++||||||| ++++..|...+.+. +...++
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~i~~i-~~~l~~ 300 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQVMQI-FQALSQ 300 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHHHHHH-HHhCCC
Confidence 222222222222 1234568999999999999998877778899999999999 67776666554433 334467
Q ss_pred ceEEEeccCCCH--HHHHHHHhhcCCCcceeEEEecCCCc-cceeeceehhHHHHHHHhccCCCCccccccccccCCCCC
Q 004875 170 LRVVLMSATADI--TKYRDYFRDLGRGERVEVLAIPSTNQ-RTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (726)
Q Consensus 170 lklIlmSATl~~--~~~~~~f~~~~~~~~~~v~~~~~~~~-~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 246 (726)
.+++++|||++. +.+...+.. . ...+.+..... .........+++
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~----~-~~~i~~~~~~~~~~~v~q~~~~~~--------------------------- 348 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAK----D-IILISIGNPNRPNKAVKQLAIWVE--------------------------- 348 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCC----C-CEEEEeCCCCCCCcceeEEEEecc---------------------------
Confidence 899999999864 344444432 1 11111111100 000000000000
Q ss_pred CccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC
Q 004875 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (726)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~ 326 (726)
. ......+.+++ .......+++|||++++..++.+++.|... .++.+..+||+++.++|..+++.|+.
T Consensus 349 ------~-~~k~~~l~~~l----~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~-~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 349 ------T-KQKKQKLFDIL----KSKQHFKPPAVVFVSSRLGADLLANAITVV-TGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred ------c-hhHHHHHHHHH----HhhcccCCCEEEEcCCchhHHHHHHHHhhc-cCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 0 00001111222 111122368999999999999999988642 35789999999999999999999999
Q ss_pred Cc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 327 ~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
|+ +|||||+++++|||+|+|++||+ ||+|.+... |.||+|||||. ..|.++.++++++.
T Consensus 417 G~~~ILVaTdvl~rGiDip~v~~VI~--------~d~P~s~~~----------yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 417 GEVPVIVATGVLGRGVDLLRVRQVII--------FDMPNTIKE----------YIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred CCCCEEEEecHhhccCCcccCCEEEE--------eCCCCCHHH----------HHHhccccccCCCCeEEEEEEchhHH
Confidence 99 99999999999999999999999 998875554 49999999999 67999999997654
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-35 Score=335.48 Aligned_cols=313 Identities=18% Similarity=0.225 Sum_probs=215.3
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC------------CCcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~------------~~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
-.+++|.++++.+++++++++++|||||||..+...+++.. ..+++++.|++.++.++.+.+.. ++.
T Consensus 31 ~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~-l~~ 109 (572)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK-FGA 109 (572)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH-Hhc
Confidence 35799999999999999999999999999977666655421 13577777777778888776543 333
Q ss_pred ccCCeeeeeeccc------cccCCCCeEEEEChHHHHHHHHhc-CCCCCceeEEEEcccccccccccHHHHHHHHHHhc-
Q 004875 95 ELGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK- 166 (726)
Q Consensus 95 ~lg~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~- 166 (726)
..+..++..++.. .......+|+|+||++|++.+... .+.+..+++||||||| +.++..|...+...+...
T Consensus 110 ~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~i~~il~~lp 188 (572)
T PRK04537 110 DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKDIRFLLRRMP 188 (572)
T ss_pred cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHHHHHHHHhcc
Confidence 3444444433322 123456799999999999988764 3456689999999999 566666655443332222
Q ss_pred -CCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCC
Q 004875 167 -KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (726)
Q Consensus 167 -~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~ 245 (726)
+.+.+++++|||++..........+..+. .+............... +.. .
T Consensus 189 ~~~~~q~ll~SATl~~~v~~l~~~~l~~p~--~i~v~~~~~~~~~i~q~-------------------------~~~-~- 239 (572)
T PRK04537 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPE--KLVVETETITAARVRQR-------------------------IYF-P- 239 (572)
T ss_pred cccCceEEEEeCCccHHHHHHHHHHhcCCc--EEEeccccccccceeEE-------------------------EEe-c-
Confidence 22679999999997654433332222111 11110000000000000 000 0
Q ss_pred CCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccC
Q 004875 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (726)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~ 325 (726)
.... .+ ..+..+.... .+.++||||+++..++.+++.|... ++.+..+||+|++.+|.++++.|+
T Consensus 240 -------~~~~---k~-~~L~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr 304 (572)
T PRK04537 240 -------ADEE---KQ-TLLLGLLSRS--EGARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQ 304 (572)
T ss_pred -------CHHH---HH-HHHHHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHH
Confidence 0000 11 1122222222 2368999999999999999999854 588999999999999999999999
Q ss_pred CCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 326 SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 326 ~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
++. +|||||+++++|||+|+|++||+ ||.+.+.+.| +||+||+||. ..|.|+.++++.+.
T Consensus 305 ~G~~~VLVaTdv~arGIDip~V~~VIn--------yd~P~s~~~y----------vqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 305 KGQLEILVATDVAARGLHIDGVKYVYN--------YDLPFDAEDY----------VHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred cCCCeEEEEehhhhcCCCccCCCEEEE--------cCCCCCHHHH----------hhhhcccccCCCCceEEEEecHHHH
Confidence 998 99999999999999999999999 9988755555 9999999999 78999999987654
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=9.6e-35 Score=321.87 Aligned_cols=314 Identities=19% Similarity=0.224 Sum_probs=215.3
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
.+++|.++++.+.++++++++||||||||..+...+++. ...+++++.|++.++.++.+.+.... ...+..++.
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~-~~~~~~~~~ 129 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALG-DYLKVRCHA 129 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHh-hhcCceEEE
Confidence 478999999999999999999999999997766655543 22367778888888888776554432 222222222
Q ss_pred eecc------ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 103 HIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 103 ~v~~------~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++. ........+|+|+||+.|.+.+..+...+.++++||||||| +..+.++...+.+.+....++.+++++|
T Consensus 130 ~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 130 CVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD-EMLSRGFKGQIYDVFKKLPPDVQVALFS 208 (401)
T ss_pred EECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH-HHHhcchHHHHHHHHhhCCCCcEEEEEE
Confidence 2211 11234557999999999999988777667799999999999 4555455544445455556789999999
Q ss_pred cCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChh
Q 004875 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (726)
Q Consensus 177 ATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (726)
||++.+.....-.....+ ..+. ++.... .......+ +.. ....
T Consensus 209 AT~~~~~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~~~~-----------------------~~~----------~~~~ 251 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDP--KRIL-VKKDEL-TLEGIRQF-----------------------YVA----------VEKE 251 (401)
T ss_pred ecCCHHHHHHHHHHcCCC--EEEE-eCCCCc-ccCCceEE-----------------------EEe----------cChH
Confidence 998754322111111111 1111 111000 00000000 000 0000
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc
Q 004875 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (726)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn 335 (726)
+.....+..+..... ..++||||+++++++.+++.|.. .++.+..+||+++.++|..+++.|++|+ +|||||+
T Consensus 252 --~~~~~~l~~~~~~~~--~~~~ivF~~t~~~~~~l~~~l~~--~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~ 325 (401)
T PTZ00424 252 --EWKFDTLCDLYETLT--ITQAIIYCNTRRKVDYLTKKMHE--RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD 325 (401)
T ss_pred --HHHHHHHHHHHHhcC--CCeEEEEecCcHHHHHHHHHHHH--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc
Confidence 000112222222222 25899999999999999999984 3588999999999999999999999998 9999999
Q ss_pred cccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 336 iae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
++++|||+|++++||+ ||.+.+. .+|.||+|||||. ..|.|+.++++++..
T Consensus 326 ~l~~GiDip~v~~VI~--------~~~p~s~----------~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 326 LLARGIDVQQVSLVIN--------YDLPASP----------ENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred cccCCcCcccCCEEEE--------ECCCCCH----------HHEeecccccccCCCCceEEEEEcHHHHH
Confidence 9999999999999999 8887644 4559999999998 689999999987654
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.3e-34 Score=322.50 Aligned_cols=309 Identities=18% Similarity=0.218 Sum_probs=210.6
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----C--------CCcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N--------MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~--------~~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
.+++|.++++.+.+|+++|+++|||||||..+...+++. . ..+++++.|++.++.++.+.+.... ..
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~-~~ 188 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT-KY 188 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhh-cc
Confidence 479999999999999999999999999996665555432 1 2356777777888888777665432 12
Q ss_pred cCCeeeeeeccc-------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc--
Q 004875 96 LGGEVGYHIGHS-------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-- 166 (726)
Q Consensus 96 lg~~Vgy~v~~~-------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~-- 166 (726)
.|..+.-.++.. .......+|+|+||++|+..+......+.++++|||||+| +..+..+...+.+.+...
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~ 267 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMGFIPQVRQIIRQTPR 267 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcccHHHHHHHHHhCCC
Confidence 232232222211 1123468999999999999887766667799999999999 555555544333322222
Q ss_pred CCCceEEEeccCCCHHH--HHHHHhhcCCCcceeEEEecCCCc-cceeeceehhHHHHHHHhccCCCCccccccccccCC
Q 004875 167 KNDLRVVLMSATADITK--YRDYFRDLGRGERVEVLAIPSTNQ-RTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (726)
Q Consensus 167 ~~~lklIlmSATl~~~~--~~~~f~~~~~~~~~~v~~~~~~~~-~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~ 243 (726)
..+.++|++|||++.+. +...+.. . +. ++.+..... ....... .+.
T Consensus 268 ~~~~q~i~~SAT~~~~~~~~~~~~~~--~--~~-~v~~~~~~~~~~~~~~~------------------------~~~-- 316 (475)
T PRK01297 268 KEERQTLLFSATFTDDVMNLAKQWTT--D--PA-IVEIEPENVASDTVEQH------------------------VYA-- 316 (475)
T ss_pred CCCceEEEEEeecCHHHHHHHHHhcc--C--CE-EEEeccCcCCCCcccEE------------------------EEE--
Confidence 23579999999986432 2222221 1 11 111111000 0000000 000
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhc
Q 004875 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (726)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~ 323 (726)
........++.. +..... .+++||||+++++++.+++.|... ++.+..+||+++.++|.++++.
T Consensus 317 --------~~~~~k~~~l~~----ll~~~~--~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~ 380 (475)
T PRK01297 317 --------VAGSDKYKLLYN----LVTQNP--WERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEG 380 (475)
T ss_pred --------ecchhHHHHHHH----HHHhcC--CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHH
Confidence 000111222222 222222 368999999999999999999744 4789999999999999999999
Q ss_pred cCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 324 f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
|++|+ +||||||++++|||||++++||+ ||.+.+ .++|+||+|||||. ..|.++.+++++
T Consensus 381 Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~~P~s----------~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 381 FREGKIRVLVATDVAGRGIHIDGISHVIN--------FTLPED----------PDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred HhCCCCcEEEEccccccCCcccCCCEEEE--------eCCCCC----------HHHHHHhhCccCCCCCCceEEEEecHH
Confidence 99998 99999999999999999999999 888774 45569999999999 679999999976
Q ss_pred hH
Q 004875 402 FF 403 (726)
Q Consensus 402 ~~ 403 (726)
+.
T Consensus 443 d~ 444 (475)
T PRK01297 443 DA 444 (475)
T ss_pred HH
Confidence 43
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-33 Score=313.82 Aligned_cols=308 Identities=18% Similarity=0.174 Sum_probs=205.6
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccc
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS 107 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~ 107 (726)
.+++|.++++++.+++++++++|||||||..+....+..+...++ +.|.+.++.+...++.. .|.. +.+.....
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lV-i~P~~~L~~dq~~~l~~-~gi~----~~~l~~~~ 85 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLV-ISPLISLMEDQVLQLKA-SGIP----ATFLNSSQ 85 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEE-EecHHHHHHHHHHHHHH-cCCc----EEEEeCCC
Confidence 468999999999999999999999999996544444444433444 55555555555555543 3322 22221111
Q ss_pred ----------cccCCCCeEEEEChHHHHHHH-HhcCC-CCCceeEEEEccccccccc-ccHHHHH--HHHHHhcCCCceE
Q 004875 108 ----------KHLSERSKIVFKTAGVLLDEM-RDRGL-NALKYKVIILDEVHERSVE-SDLVLVC--VKQLLLKKNDLRV 172 (726)
Q Consensus 108 ----------~~~~~~~~Iiv~T~g~Ll~~l-~~~~l-~l~~~~~VIIDEaHeR~~~-~d~ll~~--lk~l~~~~~~lkl 172 (726)
.......+|+|+||+.+.... ....+ ...++++|||||||..+-. .||...+ +..+....++.++
T Consensus 86 ~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 165 (470)
T TIGR00614 86 SKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPI 165 (470)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCce
Confidence 112345799999999975422 11111 2358999999999954322 2444333 3345555688999
Q ss_pred EEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccc
Q 004875 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (726)
Q Consensus 173 IlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (726)
+++|||++.....+....++...+..+ ..........+.+. .
T Consensus 166 l~lTAT~~~~~~~di~~~l~l~~~~~~-~~s~~r~nl~~~v~-----------------------------~-------- 207 (470)
T TIGR00614 166 MALTATASPSVREDILRQLNLKNPQIF-CTSFDRPNLYYEVR-----------------------------R-------- 207 (470)
T ss_pred EEEecCCCHHHHHHHHHHcCCCCCcEE-eCCCCCCCcEEEEE-----------------------------e--------
Confidence 999999987766666554332221111 11000000000000 0
Q ss_pred cChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEE
Q 004875 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVI 331 (726)
Q Consensus 253 ~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVl 331 (726)
... +.+.+++..+....+ +..+||||+++++++.+++.|+. .++.+..+||+|++++|..+++.|+.++ +||
T Consensus 208 ~~~---~~~~~l~~~l~~~~~--~~~~IIF~~s~~~~e~la~~L~~--~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vL 280 (470)
T TIGR00614 208 KTP---KILEDLLRFIRKEFK--GKSGIIYCPSRKKSEQVTASLQN--LGIAAGAYHAGLEISARDDVHHKFQRDEIQVV 280 (470)
T ss_pred CCc---cHHHHHHHHHHHhcC--CCceEEEECcHHHHHHHHHHHHh--cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 000 112233333332222 24669999999999999999984 4588999999999999999999999998 999
Q ss_pred EEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 332 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 332 vaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
|||+++++|||+|+|++||+ |++|.+.+. |.||+|||||. .+|.|+.+|+..+..
T Consensus 281 VaT~~~~~GID~p~V~~VI~--------~~~P~s~~~----------y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 281 VATVAFGMGINKPDVRFVIH--------YSLPKSMES----------YYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred EEechhhccCCcccceEEEE--------eCCCCCHHH----------HHhhhcCcCCCCCCceEEEEechhHHH
Confidence 99999999999999999999 998885554 49999999999 689999999987664
No 31
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4e-34 Score=300.58 Aligned_cols=307 Identities=23% Similarity=0.311 Sum_probs=221.5
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----C----------CCcEEEecchHHHHHHHHHH---HHh
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N----------MEPILCTQPRRFAVVAVAKM---VAK 90 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~----------~~~Iivt~Prrlaa~~~a~~---va~ 90 (726)
.+++|..+++..++++++|.+++||||||..++..|+.. . ...-++..|.|.+|+++... ++.
T Consensus 268 ptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~ 347 (673)
T KOG0333|consen 268 PTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGK 347 (673)
T ss_pred CchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcc
Confidence 368999999999999999999999999995554444321 1 11344455555566666443 223
Q ss_pred hcCCccCCeeeeeecccc--ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCC
Q 004875 91 GRNCELGGEVGYHIGHSK--HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (726)
Q Consensus 91 ~~~~~lg~~Vgy~v~~~~--~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~ 168 (726)
.+|+.+-..||..-..+. +++.++.|+++|||.|++.+.+..+.+.++..||+|||+ |+++..|-..+.+.+-..+.
T Consensus 348 ~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPs 426 (673)
T KOG0333|consen 348 PLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPS 426 (673)
T ss_pred cccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCc
Confidence 333333344554423333 468899999999999999998877777899999999999 89999887777766654321
Q ss_pred -----------------------C--ceEEEeccCCCH--H-HHHHHHhhcCCCcceeEEEec--CCCccceeeceehhH
Q 004875 169 -----------------------D--LRVVLMSATADI--T-KYRDYFRDLGRGERVEVLAIP--STNQRTIFQRRVSYL 218 (726)
Q Consensus 169 -----------------------~--lklIlmSATl~~--~-~~~~~f~~~~~~~~~~v~~~~--~~~~~~~~~~~~~yl 218 (726)
. .+.+.+|||+.+ + ....||.. ++ ++++. +.+..+.- ..++++
T Consensus 427 sn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~-----pv-~vtig~~gk~~~rve-Q~v~m~ 499 (673)
T KOG0333|consen 427 SNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR-----PV-VVTIGSAGKPTPRVE-QKVEMV 499 (673)
T ss_pred cccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC-----Ce-EEEeccCCCCccchh-eEEEEe
Confidence 1 578999999864 3 34456653 22 22222 21111111 111111
Q ss_pred HHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC
Q 004875 219 EQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP 298 (726)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~ 298 (726)
. .... . ..++ .|.... ...+||||+|+++.|+.+++.|.+
T Consensus 500 ~---------------------------------ed~k-~---kkL~-eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK 539 (673)
T KOG0333|consen 500 S---------------------------------EDEK-R---KKLI-EILESN--FDPPIIIFVNTKKGADALAKILEK 539 (673)
T ss_pred c---------------------------------chHH-H---HHHH-HHHHhC--CCCCEEEEEechhhHHHHHHHHhh
Confidence 0 0001 1 1222 222222 236999999999999999999996
Q ss_pred CCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHH
Q 004875 299 LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQS 377 (726)
Q Consensus 299 ~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a 377 (726)
.+ +.+..|||+-+++||..++..|+.+. .|+||||+|++|||||+|.+||| ||...+++.|
T Consensus 540 ~g--~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------ydmaksieDY-------- 601 (673)
T KOG0333|consen 540 AG--YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YDMAKSIEDY-------- 601 (673)
T ss_pred cc--ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cchhhhHHHH--------
Confidence 55 99999999999999999999999988 99999999999999999999999 9999988877
Q ss_pred hHHHHcCCCCCC-CCceEEEeechhh
Q 004875 378 QAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 378 ~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
.||+||+||. ..|.++.++++++
T Consensus 602 --tHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 602 --THRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred --HHHhccccccccCceeEEEeccch
Confidence 9999999999 6799999999876
No 32
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-34 Score=296.89 Aligned_cols=332 Identities=20% Similarity=0.263 Sum_probs=226.4
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC-----------CCcEEEecchHHHHH--HHHHHHHhh-cC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----------MEPILCTQPRRFAVV--AVAKMVAKG-RN 93 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~-----------~~~Iivt~Prrlaa~--~~a~~va~~-~~ 93 (726)
.+++|...++.++++++|++-++||||||.++...+++.. .+.+|++|+|+++.+ +++.-+... .+
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN 108 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 5799999999999999999999999999988777766532 125777777777643 333333332 11
Q ss_pred CccCCeeeee-eccc--cccCCCCeEEEEChHHHHHHHHhc--CCCCCceeEEEEcccccccccccHHHHHHHHHHhcCC
Q 004875 94 CELGGEVGYH-IGHS--KHLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (726)
Q Consensus 94 ~~lg~~Vgy~-v~~~--~~~~~~~~Iiv~T~g~Ll~~l~~~--~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~ 168 (726)
....-.||-. ++.+ ....+++.|+|+|||+|.+.++.. .++...++++|+|||| |.++..|...+-..+-..+.
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPK 187 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLPK 187 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhccc
Confidence 1111123321 1111 112467889999999999999873 3444489999999999 99999999888777777777
Q ss_pred CceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCc
Q 004875 169 DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (726)
Q Consensus 169 ~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 248 (726)
..+.-++|||...+ ..+.+. .|-..++.|..-........-....+| ...
T Consensus 188 QRRTGLFSATq~~~-v~dL~r-aGLRNpv~V~V~~k~~~~tPS~L~~~Y-----------------------~v~----- 237 (567)
T KOG0345|consen 188 QRRTGLFSATQTQE-VEDLAR-AGLRNPVRVSVKEKSKSATPSSLALEY-----------------------LVC----- 237 (567)
T ss_pred ccccccccchhhHH-HHHHHH-hhccCceeeeecccccccCchhhccee-----------------------eEe-----
Confidence 88999999998533 222222 122223332111110000000011111 100
Q ss_pred cccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc
Q 004875 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (726)
Q Consensus 249 ~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r 328 (726)
.. .+-. ..+.++..+.. .+++|||.+|-..++.....+........+..+||.|.+.+|..+++.|+...
T Consensus 238 ------~a-~eK~-~~lv~~L~~~~--~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~ 307 (567)
T KOG0345|consen 238 ------EA-DEKL-SQLVHLLNNNK--DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLS 307 (567)
T ss_pred ------cH-HHHH-HHHHHHHhccc--cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhcc
Confidence 00 0011 12222222222 37999999999999998888877666789999999999999999999998855
Q ss_pred -EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeech--hhHh
Q 004875 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK--SFFG 404 (726)
Q Consensus 329 -kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~--~~~~ 404 (726)
.|++|||+|++|||||+|++||+ ||||...+++ .||+||+||. +.|.++.+..+ +.|-
T Consensus 308 ~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~~~F----------vHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 308 NGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKDPSSF----------VHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred CceEEeehhhhccCCCCCceEEEe--------cCCCCChhHH----------HhhcchhhhccCccceEEEecccHHHHH
Confidence 99999999999999999999999 9999988877 9999999999 67887776654 4564
Q ss_pred hc-cCCCCCcccccC
Q 004875 405 TL-EDHECPAILRLS 418 (726)
Q Consensus 405 ~l-~~~~~pei~r~~ 418 (726)
.+ .-...|++-+..
T Consensus 370 eFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 370 EFLRIKGKVELERID 384 (567)
T ss_pred HHHHhcCccchhhhc
Confidence 44 344456665543
No 33
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=293.86 Aligned_cols=317 Identities=21% Similarity=0.244 Sum_probs=228.0
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----CC-----CcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NM-----EPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~~-----~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
-++++|+..++.++.++++++.|.||||||.++.....+. .. -.++++.|+|.+|+|.+....+.+...-+
T Consensus 104 ~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~ 183 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHES 183 (543)
T ss_pred chhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCC
Confidence 4689999999999999999999999999995544443332 11 14555556666666666555444443336
Q ss_pred Ceeeeeecccc------ccCCCCeEEEEChHHHHHHHHhcCC-CCCceeEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 004875 98 GEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (726)
Q Consensus 98 ~~Vgy~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~l 170 (726)
..||+.++..+ .......|+|+|||+|++++++.+. ...+..++|+|||| |.++..|-..+.+.+-..+...
T Consensus 184 ~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk~r 262 (543)
T KOG0342|consen 184 ITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPKQR 262 (543)
T ss_pred cceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHHHHhccccc
Confidence 66777776543 2345899999999999999987543 33477899999999 9999999999888887777888
Q ss_pred eEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 004875 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (726)
Q Consensus 171 klIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 250 (726)
|..++|||.+.+ ..+.....-..+++-+-...+... .+.+.+...|...+...
T Consensus 263 qt~LFSAT~~~k-V~~l~~~~L~~d~~~v~~~d~~~~-----------------------~The~l~Qgyvv~~~~~--- 315 (543)
T KOG0342|consen 263 QTLLFSATQPSK-VKDLARGALKRDPVFVNVDDGGER-----------------------ETHERLEQGYVVAPSDS--- 315 (543)
T ss_pred eeeEeeCCCcHH-HHHHHHHhhcCCceEeecCCCCCc-----------------------chhhcccceEEeccccc---
Confidence 999999998754 444444322223332222222110 01111112222111111
Q ss_pred cccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-E
Q 004875 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (726)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-k 329 (726)
. .. -+...+.++.. ..+|+|||+|...+...++.|+ ..++.|.-+||+.++..|..++..|+... -
T Consensus 316 -----~-f~---ll~~~LKk~~~--~~KiiVF~sT~~~vk~~~~lL~--~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg 382 (543)
T KOG0342|consen 316 -----R-FS---LLYTFLKKNIK--RYKIIVFFSTCMSVKFHAELLN--YIDLPVLEIHGKQKQNKRTSTFFEFCKAESG 382 (543)
T ss_pred -----h-HH---HHHHHHHHhcC--CceEEEEechhhHHHHHHHHHh--hcCCchhhhhcCCcccccchHHHHHhhcccc
Confidence 0 11 22222333332 2699999999999999999998 44588999999999999999999998877 9
Q ss_pred EEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 330 VlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
|+||||++++|+|+|+|+.||+ ||+|...+.| +||.||+||. ..|..+.+..+.+
T Consensus 383 IL~cTDVaARGlD~P~V~~VvQ--------~~~P~d~~~Y----------IHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 383 ILVCTDVAARGLDIPDVDWVVQ--------YDPPSDPEQY----------IHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred eEEecchhhccCCCCCceEEEE--------eCCCCCHHHH----------HHHhccccccCCCceEEEEeChhH
Confidence 9999999999999999999999 9999977666 9999999999 6799999887754
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.2e-32 Score=319.97 Aligned_cols=311 Identities=18% Similarity=0.151 Sum_probs=205.4
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccc
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS 107 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~ 107 (726)
.++.|.+++++++.++++++++|||+|||..+...++..+...|+++|.+.++..++..... .+.......|.....+
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~--~GI~Aa~L~s~~s~~e 538 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQ--ANIPAASLSAGMEWAE 538 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHh--CCCeEEEEECCCCHHH
Confidence 46899999999999999999999999999544444444444445555555554445444332 2222111111110000
Q ss_pred ------cc--cCCCCeEEEEChHHHHH--HHHhc--CC-CCCceeEEEEccccccccc-ccHHHHHH--HHHHhcCCCce
Q 004875 108 ------KH--LSERSKIVFKTAGVLLD--EMRDR--GL-NALKYKVIILDEVHERSVE-SDLVLVCV--KQLLLKKNDLR 171 (726)
Q Consensus 108 ------~~--~~~~~~Iiv~T~g~Ll~--~l~~~--~l-~l~~~~~VIIDEaHeR~~~-~d~ll~~l--k~l~~~~~~lk 171 (726)
.. .....+|+|+||++|.. .+... .+ ....+++|||||||+.+-. .||...+. ..+....++.+
T Consensus 539 q~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vP 618 (1195)
T PLN03137 539 QLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIP 618 (1195)
T ss_pred HHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCC
Confidence 01 12568999999999852 11111 11 1235899999999964432 35655443 33455567889
Q ss_pred EEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCcc-ceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 004875 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQR-TIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (726)
Q Consensus 172 lIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~-~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 250 (726)
++++|||++.....+....++...+. ++ ..+.... ..|.+. +
T Consensus 619 ilALTATAT~~V~eDI~~~L~l~~~~-vf-r~Sf~RpNL~y~Vv-----------------------------~------ 661 (1195)
T PLN03137 619 VLALTATATASVKEDVVQALGLVNCV-VF-RQSFNRPNLWYSVV-----------------------------P------ 661 (1195)
T ss_pred eEEEEecCCHHHHHHHHHHcCCCCcE-Ee-ecccCccceEEEEe-----------------------------c------
Confidence 99999999876655555443322211 11 1111000 001000 0
Q ss_pred cccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-E
Q 004875 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (726)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-k 329 (726)
... .....+...+..... .+..||||.++.+++.+++.|.. .++.+.++||+|++++|..+++.|..++ +
T Consensus 662 --k~k---k~le~L~~~I~~~~~--~esgIIYC~SRke~E~LAe~L~~--~Gika~~YHAGLs~eeR~~vqe~F~~Gei~ 732 (1195)
T PLN03137 662 --KTK---KCLEDIDKFIKENHF--DECGIIYCLSRMDCEKVAERLQE--FGHKAAFYHGSMDPAQRAFVQKQWSKDEIN 732 (1195)
T ss_pred --cch---hHHHHHHHHHHhccc--CCCceeEeCchhHHHHHHHHHHH--CCCCeeeeeCCCCHHHHHHHHHHHhcCCCc
Confidence 000 011122223322221 25779999999999999999984 4588999999999999999999999998 9
Q ss_pred EEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 330 VlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
|||||+++++|||+|+|++||+ ||.|.+++.| +||+|||||. .+|.|+.+|+..++.
T Consensus 733 VLVATdAFGMGIDkPDVR~VIH--------ydlPkSiEsY----------yQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 733 IICATVAFGMGINKPDVRFVIH--------HSLPKSIEGY----------HQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred EEEEechhhcCCCccCCcEEEE--------cCCCCCHHHH----------HhhhcccCCCCCCceEEEEecHHHHH
Confidence 9999999999999999999999 9999977766 9999999999 689999999987764
No 35
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.8e-32 Score=316.28 Aligned_cols=311 Identities=18% Similarity=0.194 Sum_probs=207.7
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeec-
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG- 105 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~- 105 (726)
..+++|.++++++.+++++++++|||||||..+..+.+.... ..+++.|.+.++.+....+.. .|.......+....
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g-~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~~~~~ 102 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDG-LTLVVSPLISLMKDQVDQLLA-NGVAAACLNSTQTRE 102 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCC-CEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCCCCHH
Confidence 456899999999999999999999999999644434333333 445555655555555555443 23221111010000
Q ss_pred -----cccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccc-ccHHHH--HHHHHHhcCCCceEEEecc
Q 004875 106 -----HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLV--CVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 106 -----~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-~d~ll~--~lk~l~~~~~~lklIlmSA 177 (726)
.........+++|+||+.+........+...++++|||||||+.+-. .||... .+..+....++.+++++||
T Consensus 103 ~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTA 182 (607)
T PRK11057 103 QQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTA 182 (607)
T ss_pred HHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEec
Confidence 01122356789999999987533222233347999999999964432 234332 3444555668899999999
Q ss_pred CCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhH
Q 004875 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (726)
Q Consensus 178 Tl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (726)
|++.....++...++...+. .......... .. |... .. .
T Consensus 183 T~~~~~~~di~~~l~l~~~~--~~~~~~~r~n-----l~-----------------------~~v~------~~--~--- 221 (607)
T PRK11057 183 TADDTTRQDIVRLLGLNDPL--IQISSFDRPN-----IR-----------------------YTLV------EK--F--- 221 (607)
T ss_pred CCChhHHHHHHHHhCCCCeE--EEECCCCCCc-----ce-----------------------eeee------ec--c---
Confidence 99877655555543322221 1111110000 00 0000 00 0
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
.....++..+... .++++||||+++++++.+++.|+. .++.+..+||+|++++|..+++.|+.++ +|||||++
T Consensus 222 -~~~~~l~~~l~~~---~~~~~IIFc~tr~~~e~la~~L~~--~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a 295 (607)
T PRK11057 222 -KPLDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQS--RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA 295 (607)
T ss_pred -chHHHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech
Confidence 0011233333322 236899999999999999999985 4588999999999999999999999988 99999999
Q ss_pred ccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 337 ae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
+++|||+|+|++||+ ||.|.+.+ +|.||+|||||. .+|.|+.+|+..++.
T Consensus 296 ~~~GIDip~V~~VI~--------~d~P~s~~----------~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 296 FGMGINKPNVRFVVH--------FDIPRNIE----------SYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred hhccCCCCCcCEEEE--------eCCCCCHH----------HHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 999999999999999 99887555 459999999999 679999999987754
No 36
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=296.36 Aligned_cols=317 Identities=23% Similarity=0.316 Sum_probs=227.8
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC--------CcEEEecchHHHHH---HHHHHHHhhcCCcc
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--------EPILCTQPRRFAVV---AVAKMVAKGRNCEL 96 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~--------~~Iivt~Prrlaa~---~~a~~va~~~~~~l 96 (726)
.+|+|...|+..+-+++++.||.||||||.++...+++... .+|+|..|+|.+|+ ++.+.+++.....+
T Consensus 204 PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~ 283 (691)
T KOG0338|consen 204 PTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITV 283 (691)
T ss_pred CCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhcccee
Confidence 46899999999999999999999999999888888887532 25666555555554 45666777766555
Q ss_pred CCeeeee-ec-cccccCCCCeEEEEChHHHHHHHHhc-CCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEE
Q 004875 97 GGEVGYH-IG-HSKHLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (726)
Q Consensus 97 g~~Vgy~-v~-~~~~~~~~~~Iiv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklI 173 (726)
|-.||.. ++ ++..+...++|+|+|||+|.+++.+. .+++.++-++|+|||+ |+++..|...+-..+.....+.|.+
T Consensus 284 ~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFademnEii~lcpk~RQTm 362 (691)
T KOG0338|consen 284 GLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADEMNEIIRLCPKNRQTM 362 (691)
T ss_pred eeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHHHHHHHHhccccccce
Confidence 5444422 11 23445778999999999999999864 4667799999999999 9999888877766665556678999
Q ss_pred EeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 004875 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (726)
Q Consensus 174 lmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (726)
++||||..+ +.+... +.-..|+.+..-|..... .....-|+ . .+ +. .+.+
T Consensus 363 LFSATMtee-VkdL~s-lSL~kPvrifvd~~~~~a--~~LtQEFi-------R-----------IR------~~-re~d- 412 (691)
T KOG0338|consen 363 LFSATMTEE-VKDLAS-LSLNKPVRIFVDPNKDTA--PKLTQEFI-------R-----------IR------PK-REGD- 412 (691)
T ss_pred eehhhhHHH-HHHHHH-hhcCCCeEEEeCCccccc--hhhhHHHh-------e-----------ec------cc-cccc-
Confidence 999999633 333322 122234555444332110 00000000 0 00 00 0000
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEE
Q 004875 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (726)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlv 332 (726)
.+ ..+..++... - ..+++||+.+...+.++.-.|-- .++.+.-+||+|++++|...++.|+... .|+|
T Consensus 413 Re---a~l~~l~~rt---f---~~~~ivFv~tKk~AHRl~IllGL--lgl~agElHGsLtQ~QRlesL~kFk~~eidvLi 481 (691)
T KOG0338|consen 413 RE---AMLASLITRT---F---QDRTIVFVRTKKQAHRLRILLGL--LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLI 481 (691)
T ss_pred cH---HHHHHHHHHh---c---ccceEEEEehHHHHHHHHHHHHH--hhchhhhhcccccHHHHHHHHHHHHhccCCEEE
Confidence 00 1112222221 1 25899999999999999887763 3488899999999999999999999998 9999
Q ss_pred EcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 333 aTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
|||+|++|+||++|..||| |+.|...+.| +||+||+.|. +.|..+.|..+.+-.
T Consensus 482 aTDvAsRGLDI~gV~tVIN--------y~mP~t~e~Y----------~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 482 ATDVASRGLDIEGVQTVIN--------YAMPKTIEHY----------LHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred EechhhccCCccceeEEEe--------ccCchhHHHH----------HHHhhhhhhcccCcceEEEeccccHH
Confidence 9999999999999999999 9999877766 9999999999 789999999987553
No 37
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-32 Score=269.32 Aligned_cols=315 Identities=20% Similarity=0.281 Sum_probs=224.3
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC---C--CcEEEecchHHHHHHHHHHHH---hhcCCccCCe
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN---M--EPILCTQPRRFAVVAVAKMVA---KGRNCELGGE 99 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~---~--~~Iivt~Prrlaa~~~a~~va---~~~~~~lg~~ 99 (726)
.+.+|+.++..|.++++||..+..|+|||..+..-++... . ..++++.|.|.+|.++.+-+. ..++..+...
T Consensus 50 PS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hac 129 (400)
T KOG0328|consen 50 PSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHAC 129 (400)
T ss_pred chHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEE
Confidence 3578999999999999999999999999955443333321 1 245555565655555555443 3333332222
Q ss_pred eeee-eccc-cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 100 VGYH-IGHS-KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 100 Vgy~-v~~~-~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
+|-. ++.+ ++...+.+++.+|||++++++..+.+....+.++|+||++| +++..|-..+.......+|+.|+++.||
T Consensus 130 igg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~SA 208 (400)
T KOG0328|consen 130 IGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVSA 208 (400)
T ss_pred ecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEec
Confidence 2211 1111 33456789999999999999998887777999999999996 5666777777777777788999999999
Q ss_pred CCCHHHHH--HHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccCh
Q 004875 178 TADITKYR--DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (726)
Q Consensus 178 Tl~~~~~~--~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 255 (726)
|++-+.+. +.|. +.++.++..... ......+.+|++--. .++
T Consensus 209 Tlp~eilemt~kfm----tdpvrilvkrde--ltlEgIKqf~v~ve~----------------------------Eew-- 252 (400)
T KOG0328|consen 209 TLPHEILEMTEKFM----TDPVRILVKRDE--LTLEGIKQFFVAVEK----------------------------EEW-- 252 (400)
T ss_pred cCcHHHHHHHHHhc----CCceeEEEecCC--Cchhhhhhheeeech----------------------------hhh--
Confidence 99866543 3332 233443322211 111112222211000 000
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEc
Q 004875 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (726)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaT 334 (726)
.. +.+..+..... -.+.+|||+|+..++.+.+.++ ...+.|..+||+|+++||.++++.|+++. +|+++|
T Consensus 253 -Kf----dtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~--~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitT 323 (400)
T KOG0328|consen 253 -KF----DTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMR--EANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITT 323 (400)
T ss_pred -hH----hHHHHHhhhhe--hheEEEEecccchhhHHHHHHH--hhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEe
Confidence 11 22333332222 1478999999999999999998 45599999999999999999999999999 999999
Q ss_pred ccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHhhc
Q 004875 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (726)
Q Consensus 335 niae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~~l 406 (726)
|+-++|+|+|.|..||| ||.|.+.+.| .||+||.||. +.|.++.+...++...+
T Consensus 324 DVwaRGiDv~qVslviN--------YDLP~nre~Y----------IHRIGRSGRFGRkGvainFVk~~d~~~l 378 (400)
T KOG0328|consen 324 DVWARGIDVQQVSLVIN--------YDLPNNRELY----------IHRIGRSGRFGRKGVAINFVKSDDLRIL 378 (400)
T ss_pred chhhccCCcceeEEEEe--------cCCCccHHHH----------hhhhccccccCCcceEEEEecHHHHHHH
Confidence 99999999999999999 9999987777 9999999999 78999999998776543
No 38
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-32 Score=275.87 Aligned_cols=315 Identities=22% Similarity=0.271 Sum_probs=222.1
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC----C--cEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM----E--PILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~----~--~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.+++|..++++|++|+++|-+|.||||||+.+...+++... + .+++||+|+ .|.++++.+.. +|..++-.+.
T Consensus 30 pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrE-LA~QiaEQF~a-lGk~l~lK~~ 107 (442)
T KOG0340|consen 30 PTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRE-LALQIAEQFIA-LGKLLNLKVS 107 (442)
T ss_pred CCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHH-HHHHHHHHHHH-hcccccceEE
Confidence 46899999999999999999999999999999888887543 2 455555555 45666665532 3434443333
Q ss_pred eeecc------ccccCCCCeEEEEChHHHHHHHHhcC----CCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 004875 102 YHIGH------SKHLSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 102 y~v~~------~~~~~~~~~Iiv~T~g~Ll~~l~~~~----l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk 171 (726)
.-+++ ....+++++++++|||++...+.+++ ..+.+..++|+|||+ |.++.+|-..+--.....++..+
T Consensus 108 vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~lP~~RQ 186 (442)
T KOG0340|consen 108 VIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECLPKPRQ 186 (442)
T ss_pred EEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhHHhhhhccCCCccc
Confidence 33333 34457889999999999999887652 224489999999999 89888776555444444445569
Q ss_pred EEEeccCCCHHHHHHHHhhcCC-CcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 004875 172 VVLMSATADITKYRDYFRDLGR-GERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (726)
Q Consensus 172 lIlmSATl~~~~~~~~f~~~~~-~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 250 (726)
.+++|||+. +.....|+.... +....+-.+++.. ..+.+...|...+..
T Consensus 187 tLlfSATit-d~i~ql~~~~i~k~~a~~~e~~~~vs-------------------------tvetL~q~yI~~~~~---- 236 (442)
T KOG0340|consen 187 TLLFSATIT-DTIKQLFGCPITKSIAFELEVIDGVS-------------------------TVETLYQGYILVSID---- 236 (442)
T ss_pred eEEEEeehh-hHHHHhhcCCcccccceEEeccCCCC-------------------------chhhhhhheeecchh----
Confidence 999999986 334555542111 0111111111110 011111122111110
Q ss_pred cccChhHHHHHHHHHHHHHhh-CCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-
Q 004875 251 AEIKPEVHKLIHDLVLHIHKN-ESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (726)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~-~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r- 328 (726)
.....+.++.+. +....+.++||+++..+++.++..|+.+ ++.+..+||.|++.+|...+..|+++.
T Consensus 237 ---------vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFrs~~~ 305 (442)
T KOG0340|consen 237 ---------VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFRSNAA 305 (442)
T ss_pred ---------hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh--ceeeeehhhcchHHHHHHHHHHHhhcCc
Confidence 011112222221 1113489999999999999999999854 589999999999999999999999998
Q ss_pred EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 329 kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
+|+||||+|.+|+|||.|..||| ||.|.....| .||.||+.|. +.|..+.++++.+.+
T Consensus 306 ~iliaTDVAsRGLDIP~V~LVvN--------~diPr~P~~y----------iHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 306 RILIATDVASRGLDIPTVELVVN--------HDIPRDPKDY----------IHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred cEEEEechhhcCCCCCceeEEEe--------cCCCCCHHHH----------HHhhcchhcccCCcceEEEechhhHH
Confidence 99999999999999999999999 9999988877 9999999999 679999999976543
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.1e-31 Score=317.82 Aligned_cols=318 Identities=19% Similarity=0.223 Sum_probs=205.4
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----C-------CCcEEEecchHHHHHHHHHHHH-------
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N-------MEPILCTQPRRFAVVAVAKMVA------- 89 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~-------~~~Iivt~Prrlaa~~~a~~va------- 89 (726)
++++|.++++.+.++++++|++|||||||..+...+++. . ...++++.|.+.++.++.+++.
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999997665555431 1 1246677777777777665433
Q ss_pred ---hhcCCcc-CCeeeeeecccc------ccCCCCeEEEEChHHHHHHHHhcCC--CCCceeEEEEccccccccccc---
Q 004875 90 ---KGRNCEL-GGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHERSVESD--- 154 (726)
Q Consensus 90 ---~~~~~~l-g~~Vgy~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~l--~l~~~~~VIIDEaHeR~~~~d--- 154 (726)
...|..+ +-.++...+... .....++|+++||+.|...+.+... .+.++++|||||+|+ ..+..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~-l~~~~RG~ 191 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS-LAENKRGV 191 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh-hccCccHH
Confidence 2223333 223333322211 2234679999999999766644321 245899999999994 33222
Q ss_pred HHHHHHHHHHhc-CCCceEEEeccCC-CHHHHHHHHhhcC---CCcceeEEEecCCCccceeeceehhHHHHHHHhccCC
Q 004875 155 LVLVCVKQLLLK-KNDLRVVLMSATA-DITKYRDYFRDLG---RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDH 229 (726)
Q Consensus 155 ~ll~~lk~l~~~-~~~lklIlmSATl-~~~~~~~~f~~~~---~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~ 229 (726)
.+...+.++... .++.++|++|||+ +.+.+..|+.... ...++.++..... ..+...+.
T Consensus 192 ~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~---k~~~i~v~------------- 255 (876)
T PRK13767 192 HLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV---KPFDIKVI------------- 255 (876)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC---ccceEEEe-------------
Confidence 222333444333 3678999999998 5678888876431 1222333211110 00111000
Q ss_pred CCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCC----CCcEE
Q 004875 230 GMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS----SFFKV 305 (726)
Q Consensus 230 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~----~~~~v 305 (726)
.+........ .......+...+..+... ++++||||||++.++.++..|.... .+..+
T Consensus 256 -------------~p~~~l~~~~-~~~~~~~l~~~L~~~i~~----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i 317 (876)
T PRK13767 256 -------------SPVDDLIHTP-AEEISEALYETLHELIKE----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNI 317 (876)
T ss_pred -------------ccCccccccc-cchhHHHHHHHHHHHHhc----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccce
Confidence 0000000000 000111111222222211 3689999999999999999987532 23679
Q ss_pred EEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcC
Q 004875 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (726)
Q Consensus 306 ~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~G 384 (726)
..+||++++++|..+++.|++|. +|||||+++|+|||+|+|++||+ |+.|.+. ++|.||+|
T Consensus 318 ~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~~P~sv----------~~ylQRiG 379 (876)
T PRK13767 318 GAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LGSPKSV----------SRLLQRIG 379 (876)
T ss_pred eeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eCCCCCH----------HHHHHhcc
Confidence 99999999999999999999999 99999999999999999999999 8888744 55599999
Q ss_pred CCCCC----CCceEEEee
Q 004875 385 RTGRT----CDGQVYRLV 398 (726)
Q Consensus 385 RaGR~----~~G~~~~L~ 398 (726)
||||. ..|.++.+.
T Consensus 380 RaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 380 RAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred cCCCCCCCCCcEEEEEcC
Confidence 99987 246666643
No 40
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=289.51 Aligned_cols=315 Identities=19% Similarity=0.245 Sum_probs=226.2
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----------CCCcEEEecchHHHHHH--HHHHHHhhcCC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----------NMEPILCTQPRRFAVVA--VAKMVAKGRNC 94 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----------~~~~Iivt~Prrlaa~~--~a~~va~~~~~ 94 (726)
-++.+|.+.|+..+.|++|+-.|.||||||.++...+++. |.+.+|++|+|++|.+. +-.+++...+-
T Consensus 91 ~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~f 170 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDF 170 (758)
T ss_pred cHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcccc
Confidence 4578999999999999999999999999997766666653 23477777777777553 33445554444
Q ss_pred ccCCeeeee-eccccccCCCCeEEEEChHHHHHHHHhcC-CCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 004875 95 ELGGEVGYH-IGHSKHLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (726)
Q Consensus 95 ~lg~~Vgy~-v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lkl 172 (726)
..|-.+|.. +.++...-....|+|||||+||++|...+ ++-.++.++|+|||+ |++++.|--.+-..+-..++..|.
T Consensus 171 SaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~RQT 249 (758)
T KOG0343|consen 171 SAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKRQT 249 (758)
T ss_pred ccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhhee
Confidence 444444422 22333334578999999999999998754 334489999999999 999999887766666666778899
Q ss_pred EEeccCC--CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 004875 173 VLMSATA--DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (726)
Q Consensus 173 IlmSATl--~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 250 (726)
+++|||. ....++..-- ..+.-+.+..-.. ..+ ...+...|...+
T Consensus 250 LLFSATqt~svkdLaRLsL--~dP~~vsvhe~a~----~at---------------------P~~L~Q~y~~v~------ 296 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSL--KDPVYVSVHENAV----AAT---------------------PSNLQQSYVIVP------ 296 (758)
T ss_pred eeeecccchhHHHHHHhhc--CCCcEEEEecccc----ccC---------------------hhhhhheEEEEe------
Confidence 9999996 3344444321 1111111110000 000 000111111110
Q ss_pred cccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-E
Q 004875 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (726)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-k 329 (726)
..+-+.-+...|..+. ..++|||+.+..++..+++.+.++.+++.+..|||.|++..|..+++.|-..+ -
T Consensus 297 ------l~~Ki~~L~sFI~shl---k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~ 367 (758)
T KOG0343|consen 297 ------LEDKIDMLWSFIKSHL---KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAV 367 (758)
T ss_pred ------hhhHHHHHHHHHHhcc---ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcce
Confidence 1112222333333332 25899999999999999999999999999999999999999999999997777 9
Q ss_pred EEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 330 VlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
|++|||++++|+|+|.|++||. ||-|..+++| +||+||+.|. ..|.|+.+.++.+
T Consensus 368 vLF~TDv~aRGLDFpaVdwViQ--------~DCPedv~tY----------IHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 368 VLFCTDVAARGLDFPAVDWVIQ--------VDCPEDVDTY----------IHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred EEEeehhhhccCCCcccceEEE--------ecCchhHHHH----------HHHhhhhhcccCCCceEEEEcchh
Confidence 9999999999999999999999 9999988887 9999999999 7799999988765
No 41
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=7.7e-32 Score=315.56 Aligned_cols=322 Identities=16% Similarity=0.126 Sum_probs=204.5
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh----cCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle----~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
.++++|.++++.+.+++++++++|||||||..+...+++ ....+++++.|.+.+|.++.+.+.... ..+-.++.
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~--~~~i~v~~ 113 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT--LRGVRPAT 113 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc--cCCeEEEE
Confidence 579999999999999999999999999999665555443 233467777777777777777766542 11222222
Q ss_pred eeccc-----cccCCCCeEEEEChHHHHHHHHhcC----CCCCceeEEEEcccccccccc-----cHHHHHHHHHHh-cC
Q 004875 103 HIGHS-----KHLSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHERSVES-----DLVLVCVKQLLL-KK 167 (726)
Q Consensus 103 ~v~~~-----~~~~~~~~Iiv~T~g~Ll~~l~~~~----l~l~~~~~VIIDEaHeR~~~~-----d~ll~~lk~l~~-~~ 167 (726)
..+.. .....+.+|+++||++|...+.... ..+.++++|||||||+ ..+. ..++..++.+.. ..
T Consensus 114 ~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g~fg~~~~~il~rL~ri~~~~g 192 (742)
T TIGR03817 114 YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRGVFGSHVALVLRRLRRLCARYG 192 (742)
T ss_pred EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccCccHHHHHHHHHHHHHHHHhcC
Confidence 11111 1234568999999999975443211 1145899999999995 3221 112222333332 23
Q ss_pred CCceEEEeccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCC
Q 004875 168 NDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (726)
Q Consensus 168 ~~lklIlmSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 246 (726)
.+.|+|++|||+ ++..+.+.+.. .++.++...+.+... ....+... .+......
T Consensus 193 ~~~q~i~~SATi~n~~~~~~~l~g----~~~~~i~~~~~~~~~---~~~~~~~p------------------~~~~~~~~ 247 (742)
T TIGR03817 193 ASPVFVLASATTADPAAAASRLIG----APVVAVTEDGSPRGA---RTVALWEP------------------PLTELTGE 247 (742)
T ss_pred CCCEEEEEecCCCCHHHHHHHHcC----CCeEEECCCCCCcCc---eEEEEecC------------------Cccccccc
Confidence 568999999998 44555444432 123332222111110 00000000 00000000
Q ss_pred CccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC------CCCcEEEEecCCCCHHHHHHH
Q 004875 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL------SSFFKVHILHSSVDTEQALMA 320 (726)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~------~~~~~v~~lh~~l~~~er~~~ 320 (726)
. .............+++..+... +.++||||++++.++.++..|+.. ..+..+..+||++++++|.++
T Consensus 248 ~--~~~~r~~~~~~~~~~l~~l~~~----~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~i 321 (742)
T TIGR03817 248 N--GAPVRRSASAEAADLLADLVAE----GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRREL 321 (742)
T ss_pred c--ccccccchHHHHHHHHHHHHHC----CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHH
Confidence 0 0000000001111233333222 368999999999999999887642 113578899999999999999
Q ss_pred hhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEee
Q 004875 321 MKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLV 398 (726)
Q Consensus 321 ~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~ 398 (726)
++.|++|+ ++|||||++|+|||||++++||+ ||.|.+.. +|+||+|||||. ..|.++.+.
T Consensus 322 e~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~~P~s~~----------~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 322 ERALRDGELLGVATTNALELGVDISGLDAVVI--------AGFPGTRA----------SLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred HHHHHcCCceEEEECchHhccCCcccccEEEE--------eCCCCCHH----------HHHHhccccCCCCCCcEEEEEe
Confidence 99999999 99999999999999999999999 88887554 559999999999 679999888
Q ss_pred ch
Q 004875 399 TK 400 (726)
Q Consensus 399 s~ 400 (726)
+.
T Consensus 384 ~~ 385 (742)
T TIGR03817 384 RD 385 (742)
T ss_pred CC
Confidence 63
No 42
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6e-32 Score=313.12 Aligned_cols=426 Identities=18% Similarity=0.207 Sum_probs=270.9
Q ss_pred CcHHHHHHHHHHH-HcCCcEEEEcCCCChHhHHHHHHHHhc---CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 27 PVMSLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 27 Pi~~~Q~~il~~i-~~~~~vii~a~TGSGKTt~ip~~lle~---~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
-+++.|++++... .+++|++|++|||||||......++.. +..+++++.|.+.+|.+.++.+. .-..+|-.|+-
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~--~~~~~GirV~~ 108 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFS--RLEELGIRVGI 108 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhh--hHHhcCCEEEE
Confidence 3566777777765 456999999999999996666555543 33588888898888888888887 11234444554
Q ss_pred eeccccc---cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccc----cHHHHHHHHHHhcCCCceEEEe
Q 004875 103 HIGHSKH---LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES----DLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 103 ~v~~~~~---~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~----d~ll~~lk~l~~~~~~lklIlm 175 (726)
.++..+. .-.+++|+|+||+.+-..+++.+....++++|||||+|- +.. -.+..++.++....+..|++++
T Consensus 109 ~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~--l~d~~RG~~lE~iv~r~~~~~~~~rivgL 186 (766)
T COG1204 109 STGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL--LGDRTRGPVLESIVARMRRLNELIRIVGL 186 (766)
T ss_pred ecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee--cCCcccCceehhHHHHHHhhCcceEEEEE
Confidence 4433322 236799999999999988888766666999999999993 222 2456666777777778999999
Q ss_pred ccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccC
Q 004875 176 SATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (726)
Q Consensus 176 SATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 254 (726)
|||+ |.+.+++|.+.-.. .-.+...|.. ..+.|.. ...+..+... ...
T Consensus 187 SATlpN~~evA~wL~a~~~--~~~~rp~~l~-------~~v~~~~-----------------~~~~~~~~~k-----~~~ 235 (766)
T COG1204 187 SATLPNAEEVADWLNAKLV--ESDWRPVPLR-------RGVPYVG-----------------AFLGADGKKK-----TWP 235 (766)
T ss_pred eeecCCHHHHHHHhCCccc--ccCCCCcccc-------cCCccce-----------------EEEEecCccc-----ccc
Confidence 9996 89999999985210 0000001110 0000000 0000000000 001
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC----C----------------CC-------------
Q 004875 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP----L----------------SS------------- 301 (726)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~----~----------------~~------------- 301 (726)
....+....++..-.. .++++|||++++..+...++.|+. . ..
T Consensus 236 ~~~~~~~~~~v~~~~~----~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e 311 (766)
T COG1204 236 LLIDNLALELVLESLA----EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAE 311 (766)
T ss_pred ccchHHHHHHHHHHHh----cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHH
Confidence 1111222222222211 247999999999999888877751 0 00
Q ss_pred --CcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHh
Q 004875 302 --FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQ 378 (726)
Q Consensus 302 --~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~ 378 (726)
...+..||++|+.++|..+.+.|+.|. +||+||++++.|+|.|.-++||- -..+||+.. ..+.+++.+
T Consensus 312 ~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~-----g~~~i~~~d 382 (766)
T COG1204 312 LVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKG-----GIVDIPVLD 382 (766)
T ss_pred HHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCC-----CeEECchhh
Confidence 124678999999999999999999999 99999999999999999888883 233477622 256789999
Q ss_pred HHHHcCCCCCC---CCceEEEee-chh---hHhhccCCCCCcccccChHHHH-HHHhhhhcccCCCh------hhhcccC
Q 004875 379 AEQRRGRTGRT---CDGQVYRLV-TKS---FFGTLEDHECPAILRLSLRLQV-LLICCAESKAISDP------KVLLQKA 444 (726)
Q Consensus 379 ~~QR~GRaGR~---~~G~~~~L~-s~~---~~~~l~~~~~pei~r~~L~~~i-L~l~~~~~~~l~~~------~~~~~~~ 444 (726)
+.||.|||||. .-|..+.+. +.. .+........||...+.|..-. +...+.+..+.++. ..|+...
T Consensus 383 v~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t 462 (766)
T COG1204 383 VLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERT 462 (766)
T ss_pred HhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHH
Confidence 99999999999 346666555 222 2234455566665222221110 11111111112211 1111111
Q ss_pred CCC-------CCHHHHHHHHHHHHHcC-ccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhcc
Q 004875 445 LDP-------PYPEVVGDALDLLDHKR-ALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502 (726)
Q Consensus 445 l~p-------P~~~~i~~al~~L~~lg-al~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~ 502 (726)
.-- -....+..++..|.+.+ .++.. .+.+..|++|+.++++.++|..++.+.....
T Consensus 463 ~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~--~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 463 FYNPQTYGEGMLREEILASLRYLEENGLILDAD--WEALHATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred HhhhhhccccchHHHHHHHHHHHHhccceeecc--ccccchhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 111 13456888999999987 66542 2456789999999999999999998776543
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.6e-31 Score=306.28 Aligned_cols=306 Identities=18% Similarity=0.164 Sum_probs=207.8
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecc-
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH- 106 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~- 106 (726)
.++.|.++++++.+++++++++|||+|||..+..+.+.... ..+++.|...++.+....+.. +|. .+++....
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g-~~lVisPl~sL~~dq~~~l~~-~gi----~~~~~~s~~ 87 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKG-LTVVISPLISLMKDQVDQLRA-AGV----AAAYLNSTL 87 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCC-cEEEEcCCHHHHHHHHHHHHH-cCC----cEEEEeCCC
Confidence 56899999999999999999999999999554444443433 344555655555555555543 333 23322111
Q ss_pred --c-------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccc-ccHHHHH--HHHHHhcCCCceEEE
Q 004875 107 --S-------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVC--VKQLLLKKNDLRVVL 174 (726)
Q Consensus 107 --~-------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-~d~ll~~--lk~l~~~~~~lklIl 174 (726)
. .......+|+|+||+.|........+...++++|||||||+.+-. .||...+ +..+....++.++++
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~ 167 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIA 167 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEE
Confidence 1 112356799999999997544333334458999999999964432 3454433 333444556677999
Q ss_pred eccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccC
Q 004875 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (726)
Q Consensus 175 mSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 254 (726)
+|||++.....+....++...+..+.....++ ...+.+. ..
T Consensus 168 lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~-----------------------------~~--------- 208 (591)
T TIGR01389 168 LTATADAETRQDIRELLRLADANEFITSFDRP-NLRFSVV-----------------------------KK--------- 208 (591)
T ss_pred EEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-CcEEEEE-----------------------------eC---------
Confidence 99999877666666544322222111100000 0000000 00
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEE
Q 004875 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (726)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlva 333 (726)
....+ .+...+.... +++.||||+++.+++.+++.|.. .++.+..+||+|+.++|..+++.|..++ +||||
T Consensus 209 ~~~~~---~l~~~l~~~~---~~~~IIf~~sr~~~e~la~~L~~--~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVa 280 (591)
T TIGR01389 209 NNKQK---FLLDYLKKHR---GQSGIIYASSRKKVEELAERLES--QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVA 280 (591)
T ss_pred CCHHH---HHHHHHHhcC---CCCEEEEECcHHHHHHHHHHHHh--CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 00011 2222232222 36889999999999999999984 4588999999999999999999999988 99999
Q ss_pred cccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 334 Tniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
|+++++|||+|+|++||+ ||++.+.+.| .||+|||||. .+|.|+.+|+..+..
T Consensus 281 T~a~~~GID~p~v~~VI~--------~~~p~s~~~y----------~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 281 TNAFGMGIDKPNVRFVIH--------YDMPGNLESY----------YQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred echhhccCcCCCCCEEEE--------cCCCCCHHHH----------hhhhccccCCCCCceEEEecCHHHHH
Confidence 999999999999999999 9988866555 9999999998 589999999987754
No 44
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=281.07 Aligned_cols=420 Identities=18% Similarity=0.188 Sum_probs=278.0
Q ss_pred cHHHHHHHHHH-HHcCCcEEEEcCCCChHhHHHHHH----HHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQF----LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~-i~~~~~vii~a~TGSGKTt~ip~~----lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
+.|+|.-++++ +++|.+.+|+.+|+||||..--.. ++.. .++.++..|--.+|.|-...+.+.. .++|-.|..
T Consensus 217 LlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-g~KmlfLvPLVALANQKy~dF~~rY-s~Lglkvai 294 (830)
T COG1202 217 LLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-GKKMLFLVPLVALANQKYEDFKERY-SKLGLKVAI 294 (830)
T ss_pred ecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-CCeEEEEehhHHhhcchHHHHHHHh-hcccceEEE
Confidence 35677777776 678999999999999999442221 2333 3466666776666666665554443 466766655
Q ss_pred eeccc----------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccc-----cccccccHHHHHHHHHHhcC
Q 004875 103 HIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH-----ERSVESDLVLVCVKQLLLKK 167 (726)
Q Consensus 103 ~v~~~----------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH-----eR~~~~d~ll~~lk~l~~~~ 167 (726)
.|+.. ...+.+++|+|+|.+=+-..+..+. .+.+++.|||||+| ||... +.+++.++....
T Consensus 295 rVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~-~lgdiGtVVIDEiHtL~deERG~R---LdGLI~RLr~l~ 370 (830)
T COG1202 295 RVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK-DLGDIGTVVIDEIHTLEDEERGPR---LDGLIGRLRYLF 370 (830)
T ss_pred EechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC-cccccceEEeeeeeeccchhcccc---hhhHHHHHHHhC
Confidence 55422 2235678999999988877777653 46799999999999 34444 445555555667
Q ss_pred CCceEEEeccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCC
Q 004875 168 NDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (726)
Q Consensus 168 ~~lklIlmSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 246 (726)
|+.|+|.+|||. |++.++..++. ..+.-..+ ..|.+.+ ..+
T Consensus 371 ~~AQ~i~LSATVgNp~elA~~l~a-------~lV~y~~R----PVplErH---------------------lvf------ 412 (830)
T COG1202 371 PGAQFIYLSATVGNPEELAKKLGA-------KLVLYDER----PVPLERH---------------------LVF------ 412 (830)
T ss_pred CCCeEEEEEeecCChHHHHHHhCC-------eeEeecCC----CCChhHe---------------------eee------
Confidence 899999999997 89999999974 22211111 1111100 000
Q ss_pred CccccccChhHHHHHHHHHHHHHhhC--CCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhcc
Q 004875 247 SMANAEIKPEVHKLIHDLVLHIHKNE--SDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC 324 (726)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~--~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f 324 (726)
.....+..+++..++..-..+. ....|++|||.++++.++.+++.|. +.++.+.++|++|+..+|+.+...|
T Consensus 413 ----~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~--~kG~~a~pYHaGL~y~eRk~vE~~F 486 (830)
T COG1202 413 ----ARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT--GKGLKAAPYHAGLPYKERKSVERAF 486 (830)
T ss_pred ----ecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh--cCCcccccccCCCcHHHHHHHHHHH
Confidence 0001122234444444333222 2235899999999999999999999 5579999999999999999999999
Q ss_pred CCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC---CCceEEEeech
Q 004875 325 KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTK 400 (726)
Q Consensus 325 ~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~---~~G~~~~L~s~ 400 (726)
..+. .++|+|..++.|+|+|.-.+|.. . -..-..|+|..+|.||.|||||. ..|++|.|..+
T Consensus 487 ~~q~l~~VVTTAAL~AGVDFPASQVIFE----------s----LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 487 AAQELAAVVTTAALAAGVDFPASQVIFE----------S----LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hcCCcceEeehhhhhcCCCCchHHHHHH----------H----HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9998 99999999999999998776653 1 12345799999999999999999 57999999764
Q ss_pred h-hHhh-ccC------------CCCCcccc---cChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHc
Q 004875 401 S-FFGT-LED------------HECPAILR---LSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHK 463 (726)
Q Consensus 401 ~-~~~~-l~~------------~~~pei~r---~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~l 463 (726)
. .|.. |.+ -..|-+.. ..-.+.+|...+.. ++.++........+-+ .-....++..|.+.
T Consensus 553 g~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA~~~v~-~s~~~i~~v~~~~~g~--~~~~~k~l~~Lee~ 629 (830)
T COG1202 553 GKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLASAGVT-NSLSVIERVNSLMLGA--AFDPKKALSKLEEY 629 (830)
T ss_pred ChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHHHhhhc-CcHHHHhhcChhhccc--cCCHHHHHHHHHhc
Confidence 2 3332 221 11121111 11122333321111 1222111221111111 01247789999999
Q ss_pred CccccCCCCCC-CCCCHhHHHHHhCCCChHHHHHHHhhcccCCHHHHHHHHHHhccC
Q 004875 464 RALQKISPRGR-YEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQ 519 (726)
Q Consensus 464 gal~~~~~~g~-~~lT~lG~~l~~lpl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~ 519 (726)
|.+.. + |+ .++|+.|+.++..-+.|.-|..|..+. .-..+.+-|++.|...
T Consensus 630 g~i~~-~--G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v--~~~~~pl~i~~~l~pf 681 (830)
T COG1202 630 GMIKK-K--GNIVRPTPYGRAVAMSFLGPSEAEFIREGV--LASMDPLRIAAELEPF 681 (830)
T ss_pred CCeec-c--CCEeeeccccceeEEeecCchHHHHHHHhh--hccCChHhHhhccccc
Confidence 99987 3 54 689999999999999999998887763 2234567788887633
No 45
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.5e-31 Score=283.69 Aligned_cols=312 Identities=20% Similarity=0.246 Sum_probs=222.1
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh----cC-----------CCcEEEecchHHHHHHHHHHHHhh
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA----EN-----------MEPILCTQPRRFAVVAVAKMVAKG 91 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle----~~-----------~~~Iivt~Prrlaa~~~a~~va~~ 91 (726)
-.+++|+-.++.+.+++++++||+||||||..+...+++ .+ ...+++..|+|.++.|+..+..+.
T Consensus 96 ~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh
Confidence 347899999999999999999999999999665555443 21 135666667777778887776665
Q ss_pred cCCc-cCCeeeeee----ccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccc-ccHHHHHHHHHHh
Q 004875 92 RNCE-LGGEVGYHI----GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLL 165 (726)
Q Consensus 92 ~~~~-lg~~Vgy~v----~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-~d~ll~~lk~l~~ 165 (726)
.+.. +-..++|.- .........++|+|+|||.|.+.+..+.+.+.++.++|+|||+ |+++ ..|...+-+.+..
T Consensus 176 ~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~ 254 (482)
T KOG0335|consen 176 SYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQ 254 (482)
T ss_pred cccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcc
Confidence 4321 112222321 1122345689999999999999999988888899999999999 8888 8888777666554
Q ss_pred cC----CCceEEEeccCCC--HHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCcccccccc
Q 004875 166 KK----NDLRVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLR 239 (726)
Q Consensus 166 ~~----~~lklIlmSATl~--~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~ 239 (726)
.. ...+.+++|||.+ ...+..+|-.-. .....+..+...... ...++.++.+
T Consensus 255 ~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~-yi~laV~rvg~~~~n--i~q~i~~V~~------------------- 312 (482)
T KOG0335|consen 255 LGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN-YIFLAVGRVGSTSEN--ITQKILFVNE------------------- 312 (482)
T ss_pred cCCCCccceeEEEEeccCChhhhhhHHHHhhcc-ceEEEEeeecccccc--ceeEeeeecc-------------------
Confidence 32 3679999999974 344555554311 001112212111100 0011111110
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhhC------CCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 004875 240 YCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNE------SDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVD 313 (726)
Q Consensus 240 y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~------~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~ 313 (726)
.+...+++..+.... ......++|||.+++.+..+...|.. .++....+||..+
T Consensus 313 ------------------~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~--~~~~~~sIhg~~t 372 (482)
T KOG0335|consen 313 ------------------MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS--NGYPAKSIHGDRT 372 (482)
T ss_pred ------------------hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc--CCCCceeecchhh
Confidence 001112222222111 11123899999999999999999984 5589999999999
Q ss_pred HHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CC
Q 004875 314 TEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CD 391 (726)
Q Consensus 314 ~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~ 391 (726)
+.+|.+.++.|++++ .|+|||||+++|+|||+|++||+ ||.|...+.| +||+||+||. ..
T Consensus 373 q~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yDmP~d~d~Y----------vHRIGRTGR~Gn~ 434 (482)
T KOG0335|consen 373 QIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YDMPADIDDY----------VHRIGRTGRVGNG 434 (482)
T ss_pred hhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------eecCcchhhH----------HHhccccccCCCC
Confidence 999999999999999 99999999999999999999999 9999998888 9999999999 67
Q ss_pred ceEEEeec
Q 004875 392 GQVYRLVT 399 (726)
Q Consensus 392 G~~~~L~s 399 (726)
|.++.|+.
T Consensus 435 G~atsf~n 442 (482)
T KOG0335|consen 435 GRATSFFN 442 (482)
T ss_pred ceeEEEec
Confidence 99999998
No 46
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5e-31 Score=275.68 Aligned_cols=313 Identities=25% Similarity=0.310 Sum_probs=226.5
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc---------CCC--cEEEecchHHHHH--HHHHHHHhhcC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------NME--PILCTQPRRFAVV--AVAKMVAKGRN 93 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~---------~~~--~Iivt~Prrlaa~--~~a~~va~~~~ 93 (726)
-.+++|.++++..+.+++|+=.|-||||||.++....+.+ +.+ .++|+|+|+++.+ +.++.+.+-.|
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg 324 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG 324 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 3467899999999999999999999999997766554432 112 3556666655532 33444444333
Q ss_pred CccCCeeeee----eccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCC
Q 004875 94 CELGGEVGYH----IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (726)
Q Consensus 94 ~~lg~~Vgy~----v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~ 169 (726)
...- .-|. ..+.+.+..++.|+|||||+|++.+.-+..++.+++++||||++ |+.+..|...+-...-..+|+
T Consensus 325 l~~v--~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpd 401 (731)
T KOG0339|consen 325 LRVV--AVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPD 401 (731)
T ss_pred ceEE--EeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCc
Confidence 3211 1111 01223345789999999999999998888888999999999999 999999998887777778999
Q ss_pred ceEEEeccCCCH--HHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCC
Q 004875 170 LRVVLMSATADI--TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (726)
Q Consensus 170 lklIlmSATl~~--~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 247 (726)
.|.|++|||+.. +.+++-| ++. ++.++.......+......++
T Consensus 402 rQtllFsaTf~~kIe~lard~--L~d--pVrvVqg~vgean~dITQ~V~------------------------------- 446 (731)
T KOG0339|consen 402 RQTLLFSATFKKKIEKLARDI--LSD--PVRVVQGEVGEANEDITQTVS------------------------------- 446 (731)
T ss_pred ceEEEeeccchHHHHHHHHHH--hcC--CeeEEEeehhccccchhheee-------------------------------
Confidence 999999999853 3333322 222 233322211000000000000
Q ss_pred ccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC
Q 004875 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (726)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~ 327 (726)
+..........++.++..... .|++|+|+.-..++++++..|. ..++.+..+||++.+.+|.+++..|+.+
T Consensus 447 -----V~~s~~~Kl~wl~~~L~~f~S--~gkvlifVTKk~~~e~i~a~Lk--lk~~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 447 -----VCPSEEKKLNWLLRHLVEFSS--EGKVLIFVTKKADAEEIAANLK--LKGFNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred -----eccCcHHHHHHHHHHhhhhcc--CCcEEEEEeccCCHHHHHHHhc--cccceeeeecCchhhHHHHHHHHHHhhc
Confidence 000001122345555554443 3799999999999999999998 5569999999999999999999999999
Q ss_pred c-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 328 r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
+ .|++|||++++|+|||+++.||+ ||....++.+ .||+||+||. ..|+.|.|+|+.+.+
T Consensus 518 ~~~VlvatDvaargldI~~ikTVvn--------yD~ardIdth----------thrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 518 RKPVLVATDVAARGLDIPSIKTVVN--------YDFARDIDTH----------THRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred CCceEEEeeHhhcCCCccccceeec--------ccccchhHHH----------HHHhhhcccccccceeeEEechhhHH
Confidence 8 99999999999999999999999 9999988888 9999999999 569999999987653
No 47
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1e-29 Score=268.80 Aligned_cols=355 Identities=20% Similarity=0.277 Sum_probs=241.1
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH----hcCCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll----e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
...+-...||..+....+.+ +++|+.|||-|||+.....+. +.+ ++++++.|++-++.|-+....+.++.+-..
T Consensus 11 p~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-GKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred cccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-CeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 45577789999999988774 999999999999966555443 333 379999999999999999999988876554
Q ss_pred eeeee--eccc--cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 99 EVGYH--IGHS--KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 99 ~Vgy~--v~~~--~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
.+... ++-+ .......+|+|+||+++.+-+..+.+++.+++++|+|||| |....-..-.+.+..+....+..+++
T Consensus 89 i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEE
Confidence 43322 1111 1235678999999999999999998888899999999999 88887777777888888888899999
Q ss_pred eccCC--CHHHHHHHHhhcCCCcceeEEEecCCCc--------cceeeceeh-hHHHHHHH--------------hccCC
Q 004875 175 MSATA--DITKYRDYFRDLGRGERVEVLAIPSTNQ--------RTIFQRRVS-YLEQVTEL--------------LGVDH 229 (726)
Q Consensus 175 mSATl--~~~~~~~~f~~~~~~~~~~v~~~~~~~~--------~~~~~~~~~-yl~~~~~~--------------~~~~~ 229 (726)
||||+ +.+++.+...++|-.. +++....+.+. -..+.++.. -.+++.+. .++..
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~-vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~ 246 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEK-VEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIE 246 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcce-EEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 99997 7888999888875321 22221111100 001111100 00000000 01000
Q ss_pred CCc----cccc--------------c------------------------------ccccC------CCCCC------cc
Q 004875 230 GMT----SELS--------------S------------------------------LRYCS------GPSPS------MA 249 (726)
Q Consensus 230 ~~~----~~~~--------------~------------------------------~~y~~------~~~~~------~~ 249 (726)
+.. .+.. . .+|.. ..... ..
T Consensus 247 ~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~ 326 (542)
T COG1111 247 SSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLA 326 (542)
T ss_pred ccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhc
Confidence 000 0000 0 00000 00000 00
Q ss_pred ccc---------------cChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEe------
Q 004875 250 NAE---------------IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHIL------ 308 (726)
Q Consensus 250 ~~~---------------~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~l------ 308 (726)
+.. ......+.+.+++....+..+ +.++|||.+-++.++.+...|.+.+....+.++
T Consensus 327 d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~--~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 327 DPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNG--DSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred ChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCC--CceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 000 000011223334433333332 369999999999999999999877655542222
Q ss_pred -cCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCC
Q 004875 309 -HSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRT 386 (726)
Q Consensus 309 -h~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRa 386 (726)
..||++.+|.++++.|+.|. +|||||+|+|+|+|||+++.||. |++-.+.... .||.||+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvpSeIR~----------IQR~GRT 466 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVPSEIRS----------IQRKGRT 466 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCcHHHHH----------HHhhCcc
Confidence 25799999999999999999 99999999999999999999998 9998866555 9999999
Q ss_pred CCCCCceEEEeechh
Q 004875 387 GRTCDGQVYRLVTKS 401 (726)
Q Consensus 387 GR~~~G~~~~L~s~~ 401 (726)
||.++|.+|.|+++.
T Consensus 467 GR~r~Grv~vLvt~g 481 (542)
T COG1111 467 GRKRKGRVVVLVTEG 481 (542)
T ss_pred ccCCCCeEEEEEecC
Confidence 999999999999875
No 48
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.6e-31 Score=269.47 Aligned_cols=314 Identities=21% Similarity=0.264 Sum_probs=224.7
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHH--HHHHH--------h-cCCCcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLL--------A-ENMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~i--p~~ll--------e-~~~~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
-.+|+|.++.+.++++++++.++.||+|||..+ |-++. + .....+++..|+|.+|.++.-.+.++.-..
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng 321 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNG 321 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcC
Confidence 346789999999999999999999999999544 33321 1 111256666666666676666555543222
Q ss_pred cCCeeeeee--c--cccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 004875 96 LGGEVGYHI--G--HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 96 lg~~Vgy~v--~--~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk 171 (726)
+....-|.- | +......+..|+++|||.|.++...+.+++..+.++|+|||+ |++++.|-..+-|.++..|||.+
T Consensus 322 ~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 322 LKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred cceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcce
Confidence 222111221 1 123346789999999999999999888888899999999999 99999999999999999999999
Q ss_pred EEEeccCCCH--HHHH-HHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCc
Q 004875 172 VVLMSATADI--TKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (726)
Q Consensus 172 lIlmSATl~~--~~~~-~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 248 (726)
+++.|||.+. .+++ .|... ++. ..+..-+-.....++.. +
T Consensus 401 tvmTSATWP~~VrrLa~sY~Ke-----p~~-v~vGsLdL~a~~sVkQ~-----------------------i-------- 443 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKE-----PMI-VYVGSLDLVAVKSVKQN-----------------------I-------- 443 (629)
T ss_pred eeeecccCchHHHHHHHHhhhC-----ceE-EEecccceeeeeeeeee-----------------------E--------
Confidence 9999999753 3333 34432 111 11111000000000000 0
Q ss_pred cccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc
Q 004875 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (726)
Q Consensus 249 ~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r 328 (726)
-..-..+.. +++..+..+... ..++||||..+-.++.+..-|. ..++..-.+||+-.+.+|+..++.|++|.
T Consensus 444 -~v~~d~~k~----~~~~~f~~~ms~-ndKvIiFv~~K~~AD~LSSd~~--l~gi~~q~lHG~r~Q~DrE~al~~~ksG~ 515 (629)
T KOG0336|consen 444 -IVTTDSEKL----EIVQFFVANMSS-NDKVIIFVSRKVMADHLSSDFC--LKGISSQSLHGNREQSDREMALEDFKSGE 515 (629)
T ss_pred -EecccHHHH----HHHHHHHHhcCC-CceEEEEEechhhhhhccchhh--hcccchhhccCChhhhhHHHHHHhhhcCc
Confidence 000011112 222223222222 2689999999988877777665 45688899999999999999999999999
Q ss_pred -EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 329 -kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
+|+||||+|.+|+|+|||++|++ ||.|.+++.| +||+||+||. +.|..+.+++..+..
T Consensus 516 vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIeeY----------VHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 516 VRILVATDLASRGLDVPDITHVYN--------YDFPRNIEEY----------VHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred eEEEEEechhhcCCCchhcceeec--------cCCCccHHHH----------HHHhcccccCCCCcceEEEEehhhHH
Confidence 99999999999999999999999 9999999888 9999999999 789999999987764
No 49
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.5e-30 Score=259.16 Aligned_cols=316 Identities=19% Similarity=0.250 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHHHHhcCC-----CcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 29 MSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 29 ~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~lle~~~-----~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
+.+|+.+++.++.+ +++|..+..|+|||+.+..-++..-. ...+|..|.|.+|.+.-.- -+++|...+-...
T Consensus 114 skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eV-v~eMGKf~~ita~ 192 (477)
T KOG0332|consen 114 SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEV-VEEMGKFTELTAS 192 (477)
T ss_pred chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHH-HHHhcCceeeeEE
Confidence 57899999999865 89999999999999998888876532 3567778888877776654 4678876666788
Q ss_pred eeeccccccCC---CCeEEEEChHHHHHHHHh-cCCCCCceeEEEEccccccccccc-HHHHHHHHHHhcCCCceEEEec
Q 004875 102 YHIGHSKHLSE---RSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 102 y~v~~~~~~~~---~~~Iiv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHeR~~~~d-~ll~~lk~l~~~~~~lklIlmS 176 (726)
|.++....... ..+|+++|||.+++++.. .-+.+..+.++|+|||+ .+++++ |....++......++.+++++|
T Consensus 193 yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFS 271 (477)
T KOG0332|consen 193 YAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFS 271 (477)
T ss_pred EEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeee
Confidence 88887644322 368999999999999887 55666799999999999 566654 4444555555556789999999
Q ss_pred cCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChh
Q 004875 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (726)
Q Consensus 177 ATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (726)
||.+. ....|-...-+...+-.+... ....+++..+|+. ..-...
T Consensus 272 ATf~e-~V~~Fa~kivpn~n~i~Lk~e---el~L~~IkQlyv~-------------------------------C~~~~~ 316 (477)
T KOG0332|consen 272 ATFVE-KVAAFALKIVPNANVIILKRE---ELALDNIKQLYVL-------------------------------CACRDD 316 (477)
T ss_pred chhHH-HHHHHHHHhcCCCceeeeehh---hccccchhhheee-------------------------------ccchhh
Confidence 99863 333443332211111111111 1123333333321 111222
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc
Q 004875 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (726)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn 335 (726)
.++.+.++...+ . -|+.+|||.|+..+..++..+.. .+..|..+||+|..++|..+++.|+.|+ ||+|+||
T Consensus 317 K~~~l~~lyg~~----t--igqsiIFc~tk~ta~~l~~~m~~--~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTn 388 (477)
T KOG0332|consen 317 KYQALVNLYGLL----T--IGQSIIFCHTKATAMWLYEEMRA--EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTN 388 (477)
T ss_pred HHHHHHHHHhhh----h--hhheEEEEeehhhHHHHHHHHHh--cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEec
Confidence 334444432211 1 27889999999999999999994 4588999999999999999999999999 9999999
Q ss_pred cccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 336 iae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
+.++|||++.|..||| ||.|.....- -.-+.|+||+||+||. +.|.+|.+....
T Consensus 389 V~ARGiDv~qVs~VvN--------ydlP~~~~~~----pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVN--------YDLPVKYTGE----PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred hhhcccccceEEEEEe--------cCCccccCCC----CCHHHHHHHhcccccccccceEEEeeccc
Confidence 9999999999999999 8888765433 3456789999999999 779999988643
No 50
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.4e-30 Score=271.38 Aligned_cols=351 Identities=21% Similarity=0.282 Sum_probs=218.3
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC----------C-cEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM----------E-PILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~----------~-~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
-.+.+|+++|+.++++++++|.++||||||..+...+.+... + --+|..|+|.+|++++.-+.+.....
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~ 238 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPF 238 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCc
Confidence 347899999999999999999999999999766666544211 1 24445555666777777776655432
Q ss_pred cCCeeeeeecccccc------CCCCeEEEEChHHHHHHHHh-cCCCCCceeEEEEcccccccccccHHHHH---HHHHHh
Q 004875 96 LGGEVGYHIGHSKHL------SERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESDLVLVC---VKQLLL 165 (726)
Q Consensus 96 lg~~Vgy~v~~~~~~------~~~~~Iiv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHeR~~~~d~ll~~---lk~l~~ 165 (726)
-=..-|+.++++++- ..+..|+|+|||+|++.+.+ ..+.+.++.+||+||+| |.++..|-..+ ++.+-.
T Consensus 239 hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 239 HWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVHS 317 (708)
T ss_pred eEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHHhh
Confidence 112334555666543 45789999999999999986 44566699999999999 88777665443 222211
Q ss_pred ----------cCCCceEEEeccCCCH--HHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCC---
Q 004875 166 ----------KKNDLRVVLMSATADI--TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHG--- 230 (726)
Q Consensus 166 ----------~~~~lklIlmSATl~~--~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~--- 230 (726)
..+.++-+++|||+.. ..+++.- -..++-+. .... .....| ...-+++ ++.+
T Consensus 318 ~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~s----LkDpv~I~-ld~s-~~~~~p-~~~a~~e------v~~~~~~ 384 (708)
T KOG0348|consen 318 IQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLS----LKDPVYIS-LDKS-HSQLNP-KDKAVQE------VDDGPAG 384 (708)
T ss_pred ccchhcccccccHHHHhHhhhhhhHHHHHHHhhcc----ccCceeee-ccch-hhhcCc-chhhhhh------cCCcccc
Confidence 1123677999999852 2333221 11222221 1100 000000 0000000 0000
Q ss_pred ------CccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC------
Q 004875 231 ------MTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP------ 298 (726)
Q Consensus 231 ------~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~------ 298 (726)
.-.+.+..+|...|. ......+ ..++....+.+.+ .+++||+.+.+.++.-++.+..
T Consensus 385 ~~l~~~~iPeqL~qry~vVPp--------KLRLV~L-aa~L~~~~k~~~~--qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 385 DKLDSFAIPEQLLQRYTVVPP--------KLRLVAL-AALLLNKVKFEEK--QKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred cccccccCcHHhhhceEecCC--------chhHHHH-HHHHHHHhhhhhh--ceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 001111112211111 1111111 2344444444443 4889999999999876666541
Q ss_pred --------------CCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCC
Q 004875 299 --------------LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVN 363 (726)
Q Consensus 299 --------------~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~ 363 (726)
...+.+++.|||+|++++|..+++.|...+ -|++|||+|++|+|+|+|++||. ||+|
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P 525 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPP 525 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCCC
Confidence 012357899999999999999999998877 99999999999999999999999 9999
Q ss_pred CCccccceEeecHHhHHHHcCCCCCC-CCceEEEee--chhhHhhccCCCCCcccccChH
Q 004875 364 RKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLV--TKSFFGTLEDHECPAILRLSLR 420 (726)
Q Consensus 364 ~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~--s~~~~~~l~~~~~pei~r~~L~ 420 (726)
. |.++|+||+||+.|. ..|....+. ++.+|........+-++.-++.
T Consensus 526 ~----------s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~ 575 (708)
T KOG0348|consen 526 F----------STADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDME 575 (708)
T ss_pred C----------CHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchh
Confidence 8 455669999999998 557655444 4556654443333334444443
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=2.4e-29 Score=297.26 Aligned_cols=299 Identities=16% Similarity=0.195 Sum_probs=205.2
Q ss_pred CcHHHHHHHHHHHHcC------CcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 27 PVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~------~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
..++.|.++++.+.++ .+.+++|+||||||..+...++.. ...++++..|++.+|.|.++.+...+. ..+.
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~-~~~i 529 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFA-NFPV 529 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhc-cCCc
Confidence 3589999999999875 689999999999996554444322 225678888888889998888776543 2333
Q ss_pred eeeeeecccc----------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCC
Q 004875 99 EVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (726)
Q Consensus 99 ~Vgy~v~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~ 168 (726)
.++...++.. ......+|+|+||..+ .+.+.+.++++|||||+|.- .......+...++
T Consensus 530 ~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf------gv~~~~~L~~~~~ 598 (926)
T TIGR00580 530 TIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF------GVKQKEKLKELRT 598 (926)
T ss_pred EEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc------chhHHHHHHhcCC
Confidence 3333322211 1123689999999543 33445679999999999942 1122233334456
Q ss_pred CceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCc
Q 004875 169 DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (726)
Q Consensus 169 ~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 248 (726)
+.++++||||+.+..+....... . ...++..+.. ...+++.++.+
T Consensus 599 ~~~vL~~SATpiprtl~~~l~g~--~-d~s~I~~~p~---~R~~V~t~v~~----------------------------- 643 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLHMSMSGI--R-DLSIIATPPE---DRLPVRTFVME----------------------------- 643 (926)
T ss_pred CCCEEEEecCCCHHHHHHHHhcC--C-CcEEEecCCC---CccceEEEEEe-----------------------------
Confidence 78999999998776665433221 1 1222222211 11122111100
Q ss_pred cccccChhHHHHHHH-HHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC
Q 004875 249 ANAEIKPEVHKLIHD-LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (726)
Q Consensus 249 ~~~~~~~~~~~li~~-lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~ 327 (726)
... ..+.. +...+. .+++++||||+.++++.+++.|+...+++.+..+||+|++++|.++++.|++|
T Consensus 644 ----~~~---~~i~~~i~~el~-----~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G 711 (926)
T TIGR00580 644 ----YDP---ELVREAIRRELL-----RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG 711 (926)
T ss_pred ----cCH---HHHHHHHHHHHH-----cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC
Confidence 000 01111 112221 13799999999999999999998765678999999999999999999999999
Q ss_pred c-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 328 r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
+ +|||||+++|+|||+|++++||. +|++.. +-+++.||+||+||. ..|.||.++++.
T Consensus 712 k~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~~---------gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 712 EFQVLVCTTIIETGIDIPNANTIII--------ERADKF---------GLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCEEEECChhhcccccccCCEEEE--------ecCCCC---------CHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9 99999999999999999999997 776541 234569999999999 789999999753
No 52
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.6e-31 Score=260.58 Aligned_cols=310 Identities=18% Similarity=0.258 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC------CcEEEecchHHHHH--HHHHHHHhhcCCccCCee
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM------EPILCTQPRRFAVV--AVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~------~~Iivt~Prrlaa~--~~a~~va~~~~~~lg~~V 100 (726)
+|+|++.++..+.+++++.-|..|+|||.++...+++... ..++++++|++|.+ ++..++++.++..+-..+
T Consensus 109 SPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvtt 188 (459)
T KOG0326|consen 109 SPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTT 188 (459)
T ss_pred CCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEec
Confidence 5789999999999999999999999999777777776543 35777777777643 455556665554432233
Q ss_pred eeeecccc--ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 101 GYHIGHSK--HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 101 gy~v~~~~--~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
|-..-.++ +.....+++++|||++++++..+--.+++...+|+|||+ ..+..||...+-+.+...+++.|+++.|||
T Consensus 189 GGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 189 GGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred CCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 32211222 236678999999999999998876677899999999999 789999998888888888889999999999
Q ss_pred CCHHHHHHHHhh-cCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhH
Q 004875 179 ADITKYRDYFRD-LGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (726)
Q Consensus 179 l~~~~~~~~f~~-~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (726)
.+.. ...|... +..++.+.. .. +-....+..+| ........+
T Consensus 268 FP~t-Vk~Fm~~~l~kPy~INL--M~---eLtl~GvtQyY-------------------------------afV~e~qKv 310 (459)
T KOG0326|consen 268 FPLT-VKGFMDRHLKKPYEINL--ME---ELTLKGVTQYY-------------------------------AFVEERQKV 310 (459)
T ss_pred cchh-HHHHHHHhccCcceeeh--hh---hhhhcchhhhe-------------------------------eeechhhhh
Confidence 7532 2222221 111111110 00 00111111111 100111111
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
.-+..+...+. -.+.+||||+...+|-++..+.+++ +.+...|+.|.++.|.+++..|++|. +.+||||.
T Consensus 311 -hCLntLfskLq------INQsIIFCNS~~rVELLAkKITelG--yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 311 -HCLNTLFSKLQ------INQSIIFCNSTNRVELLAKKITELG--YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred -hhHHHHHHHhc------ccceEEEeccchHhHHHHHHHHhcc--chhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 11122222221 1477999999999999999998654 89999999999999999999999999 99999999
Q ss_pred ccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 337 ae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
+.+||||++|++||| ||.+...++| +||+||+||. ..|.++.|++-++.
T Consensus 382 ~TRGIDiqavNvVIN--------FDfpk~aEtY----------LHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVIN--------FDFPKNAETY----------LHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred hhcccccceeeEEEe--------cCCCCCHHHH----------HHHccCCccCCCcceEEEEEehhhh
Confidence 999999999999999 9999988877 9999999999 78999999985543
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=6.6e-29 Score=289.74 Aligned_cols=300 Identities=19% Similarity=0.210 Sum_probs=199.7
Q ss_pred CCcHHHHHHHHHHHHcC------CcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~------~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
+.+++.|.++++.+.++ .+++++|+||||||..+...++.. ...++++..|++.+|.+.++.+.+.+. .+|
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~-~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLE-PLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHh-hcC
Confidence 34789999999999876 378999999999996555444332 234677888889999999988876542 334
Q ss_pred Ceeeeeecccc----------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcC
Q 004875 98 GEVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (726)
Q Consensus 98 ~~Vgy~v~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~ 167 (726)
-.++...+... ......+|+|+|++.+.. ...+.++++|||||+|. . .. ..-..+....
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr-f-g~----~qr~~l~~~~ 407 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR-F-GV----EQRLALREKG 407 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh-h-hH----HHHHHHHhcC
Confidence 45555544322 123468999999987743 33456899999999993 2 11 1122233334
Q ss_pred CCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCC
Q 004875 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (726)
Q Consensus 168 ~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 247 (726)
...++++||||+.+..+...+. +......+...|.. + .++...+..
T Consensus 408 ~~~~iL~~SATp~prtl~~~~~--g~~~~s~i~~~p~~---r-~~i~~~~~~---------------------------- 453 (681)
T PRK10917 408 ENPHVLVMTATPIPRTLAMTAY--GDLDVSVIDELPPG---R-KPITTVVIP---------------------------- 453 (681)
T ss_pred CCCCEEEEeCCCCHHHHHHHHc--CCCceEEEecCCCC---C-CCcEEEEeC----------------------------
Confidence 4678999999987665543321 11111111111110 0 011111000
Q ss_pred ccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHH--------HHHHHHHHhcCCCCCcEEEEecCCCCHHHHHH
Q 004875 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY--------ALEQQWHLMKPLSSFFKVHILHSSVDTEQALM 319 (726)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~--------~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~ 319 (726)
..... .++..+...+ ..+.+++||||..+ .++.+++.|.....++.+..+||+|++++|..
T Consensus 454 ---~~~~~---~~~~~i~~~~-----~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 454 ---DSRRD---EVYERIREEI-----AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred ---cccHH---HHHHHHHHHH-----HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 00001 1111111111 12368999999643 45566777765544578999999999999999
Q ss_pred HhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEe
Q 004875 320 AMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (726)
Q Consensus 320 ~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L 397 (726)
+++.|++|+ +|||||+++|+|||+|++++||. ||++.. +-+++.||+||+||. .+|.||.+
T Consensus 523 i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 523 VMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAERF---------GLAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred HHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCCC---------CHHHHHHHhhcccCCCCceEEEEE
Confidence 999999998 99999999999999999999998 887751 235569999999999 68999999
Q ss_pred ec
Q 004875 398 VT 399 (726)
Q Consensus 398 ~s 399 (726)
++
T Consensus 586 ~~ 587 (681)
T PRK10917 586 YK 587 (681)
T ss_pred EC
Confidence 85
No 54
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=275.35 Aligned_cols=324 Identities=20% Similarity=0.254 Sum_probs=211.3
Q ss_pred cHHHHHHHHHHHHcC-CcEEEEcCCCChHhHHHHHHHHhcC-----------------CC--cEEEecchHHHHHHHHHH
Q 004875 28 VMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAEN-----------------ME--PILCTQPRRFAVVAVAKM 87 (726)
Q Consensus 28 i~~~Q~~il~~i~~~-~~vii~a~TGSGKTt~ip~~lle~~-----------------~~--~Iivt~Prrlaa~~~a~~ 87 (726)
.+++|...++++..+ .+++-.|+||||||.++...+++.. .. .++++|+|+ +|.|+.+.
T Consensus 204 Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRE-La~QV~~H 282 (731)
T KOG0347|consen 204 PTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRE-LAHQVKQH 282 (731)
T ss_pred CccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHH-HHHHHHHH
Confidence 367899999988887 7899999999999977666666511 11 355555554 55666555
Q ss_pred HH---hhcCCccCCeeeee-e-ccccccCCCCeEEEEChHHHHHHHHhcCC---CCCceeEEEEcccccccccccHHH--
Q 004875 88 VA---KGRNCELGGEVGYH-I-GHSKHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDLVL-- 157 (726)
Q Consensus 88 va---~~~~~~lg~~Vgy~-v-~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l---~l~~~~~VIIDEaHeR~~~~d~ll-- 157 (726)
+. ...+..+...+|.. + .++...+..++|+|+|||+|...+..+.. .+.+++++|+||++ |++......
T Consensus 283 l~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~El 361 (731)
T KOG0347|consen 283 LKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEEL 361 (731)
T ss_pred HHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHH
Confidence 43 33333333334322 1 23445577899999999999999876543 23489999999999 888765433
Q ss_pred -HHHHHHH--hcCCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccc
Q 004875 158 -VCVKQLL--LKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSE 234 (726)
Q Consensus 158 -~~lk~l~--~~~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 234 (726)
.+++.+. ..++..|.+++|||++.......-.... .. .+ ...+. ..++...+.+++...
T Consensus 362 s~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k----~~-----~k--~~~~~---~kiq~Lmk~ig~~~k---- 423 (731)
T KOG0347|consen 362 SKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRK----KK-----DK--EDELN---AKIQHLMKKIGFRGK---- 423 (731)
T ss_pred HHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhh----cc-----ch--hhhhh---HHHHHHHHHhCccCC----
Confidence 3444443 2345679999999976332222111100 00 00 00000 011112222221110
Q ss_pred cccccccCCCCCCccccccChhHHHHHHHHHHHHHhhC---------CCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEE
Q 004875 235 LSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNE---------SDIEKSILVFLPTYYALEQQWHLMKPLSSFFKV 305 (726)
Q Consensus 235 ~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~---------~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v 305 (726)
|-..+..-......-+.+...+....+ ...+|++|||||+.+.+.++.-.|..+ ++..
T Consensus 424 -----------pkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L--~i~p 490 (731)
T KOG0347|consen 424 -----------PKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL--DIPP 490 (731)
T ss_pred -----------CeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc--CCCC
Confidence 000111111111111111110000000 112589999999999999999999854 4788
Q ss_pred EEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcC
Q 004875 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (726)
Q Consensus 306 ~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~G 384 (726)
+++|+.|.+.+|.+.++.|++.. -|+||||+|++|+|||+|.+||+ |..|...+.| +||.|
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------YqVPrtseiY----------VHRSG 552 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQVPRTSEIY----------VHRSG 552 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------eecCCcccee----------Eeccc
Confidence 99999999999999999999887 99999999999999999999999 9999999888 99999
Q ss_pred CCCCC-CCceEEEeechhh
Q 004875 385 RTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 385 RaGR~-~~G~~~~L~s~~~ 402 (726)
|+.|. ..|....|+.+.+
T Consensus 553 RTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 553 RTARANSEGVSVMLCGPQE 571 (731)
T ss_pred ccccccCCCeEEEEeChHH
Confidence 99999 7899999998754
No 55
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=5.1e-29 Score=284.89 Aligned_cols=337 Identities=18% Similarity=0.223 Sum_probs=224.9
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHH----HHhcC-C-----CcEEEecchHHHHHHHHHHHH---hhcCC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF----LLAEN-M-----EPILCTQPRRFAVVAVAKMVA---KGRNC 94 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~----lle~~-~-----~~Iivt~Prrlaa~~~a~~va---~~~~~ 94 (726)
+++.|.++++.+.+|++++|+||||||||.+...+ +++.+ . -.++++.|-+.++..+-.++. .++|.
T Consensus 23 ~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~ 102 (814)
T COG1201 23 LTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGI 102 (814)
T ss_pred CCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999544443 33442 1 146777787777777766654 34444
Q ss_pred ccCCeeeeeeccc--cccCCCCeEEEEChHHHHHHHHhcCC--CCCceeEEEEccccc-----ccccccHHHHHHHHHHh
Q 004875 95 ELGGEVGYHIGHS--KHLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHE-----RSVESDLVLVCVKQLLL 165 (726)
Q Consensus 95 ~lg~~Vgy~v~~~--~~~~~~~~Iiv~T~g~Ll~~l~~~~l--~l~~~~~VIIDEaHe-----R~~~~d~ll~~lk~l~~ 165 (726)
.+....|.....+ .+....++|+++||+.|.-.+....+ .+.++.+|||||+|+ |+...-..+.-++.+
T Consensus 103 ~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l-- 180 (814)
T COG1201 103 EVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLREL-- 180 (814)
T ss_pred ccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhh--
Confidence 4322222221111 23355689999999999776654211 245999999999996 443333333333333
Q ss_pred cCCCceEEEeccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCC
Q 004875 166 KKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (726)
Q Consensus 166 ~~~~lklIlmSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~ 244 (726)
-++++.|++|||. +.+..++|+...+ .+++++.++... .+.+++...
T Consensus 181 -~~~~qRIGLSATV~~~~~varfL~g~~--~~~~Iv~~~~~k---~~~i~v~~p-------------------------- 228 (814)
T COG1201 181 -AGDFQRIGLSATVGPPEEVAKFLVGFG--DPCEIVDVSAAK---KLEIKVISP-------------------------- 228 (814)
T ss_pred -CcccEEEeehhccCCHHHHHHHhcCCC--CceEEEEcccCC---cceEEEEec--------------------------
Confidence 3489999999997 8889999997533 256776665532 122222110
Q ss_pred CCCccc-cccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhc
Q 004875 245 SPSMAN-AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (726)
Q Consensus 245 ~~~~~~-~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~ 323 (726)
.++... .......+ ..+..+.+. ...+|||+||+..+|.++..|++... ..+..+||+++.++|..+++.
T Consensus 229 ~~~~~~~~~~~~~~~----~~i~~~v~~----~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~ 299 (814)
T COG1201 229 VEDLIYDEELWAALY----ERIAELVKK----HRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEER 299 (814)
T ss_pred CCccccccchhHHHH----HHHHHHHhh----cCcEEEEEeChHHHHHHHHHHHHhcC-CceeeecccccHHHHHHHHHH
Confidence 000000 01111122 222222222 24889999999999999999986543 788999999999999999999
Q ss_pred cCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC----CCceEEEee
Q 004875 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT----CDGQVYRLV 398 (726)
Q Consensus 324 f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~----~~G~~~~L~ 398 (726)
|++|. |++|||+.+|-|||+.+|+.||+ |.+|.+...+ .||+||+|+. ..|..|...
T Consensus 300 lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~----------lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 300 LKEGELKAVVATSSLELGIDIGDIDLVIQ--------LGSPKSVNRF----------LQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HhcCCceEEEEccchhhccccCCceEEEE--------eCCcHHHHHH----------hHhccccccccCCcccEEEEecC
Confidence 99999 99999999999999999999999 9999877777 9999999987 345554444
Q ss_pred chhhHhh--------ccCCCCCcccccChHHHHHH
Q 004875 399 TKSFFGT--------LEDHECPAILRLSLRLQVLL 425 (726)
Q Consensus 399 s~~~~~~--------l~~~~~pei~r~~L~~~iL~ 425 (726)
..+-.+. --....+++-..+|+-+.-+
T Consensus 362 r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ 396 (814)
T COG1201 362 RDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQ 396 (814)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHH
Confidence 2121111 12234566666676544333
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=5.9e-29 Score=271.32 Aligned_cols=295 Identities=20% Similarity=0.199 Sum_probs=186.9
Q ss_pred cEEEEcCCCChHhHHHHHHHHhc----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee------eccc-----c
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH------IGHS-----K 108 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~------v~~~-----~ 108 (726)
+++|+||||||||+++..+++.. ...+++++.|++.++.+.++++...++..+|...|.. ...+ .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 58999999999998888877643 2358999999999999999999887765443211110 0000 0
Q ss_pred ---------ccCCCCeEEEEChHHHHHHHHhcC------CCCCceeEEEEcccccccccc--cHHHHHHHHHHhcCCCce
Q 004875 109 ---------HLSERSKIVFKTAGVLLDEMRDRG------LNALKYKVIILDEVHERSVES--DLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 109 ---------~~~~~~~Iiv~T~g~Ll~~l~~~~------l~l~~~~~VIIDEaHeR~~~~--d~ll~~lk~l~~~~~~lk 171 (726)
.......|+++||+.++..+.... +.....++|||||+|. .... +++..+++.+. ..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~-~~~~~~~~l~~~l~~l~--~~~~~ 157 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHF-YDEYTLALILAVLEVLK--DNDVP 157 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCC-CCHHHHHHHHHHHHHHH--HcCCC
Confidence 001236799999999988766411 0011448999999994 3332 34444444443 35689
Q ss_pred EEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 004875 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (726)
Q Consensus 172 lIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (726)
+|+||||++ +.+.+++....... .....+.... ..+ . ...+.... ...
T Consensus 158 ~i~~SATlp-~~l~~~~~~~~~~~--~~~~~~~~~~-~~~--~----------------------~~~~~~~~----~~~ 205 (358)
T TIGR01587 158 ILLMSATLP-KFLKEYAEKIGYVE--FNEPLDLKEE-RRF--E----------------------RHRFIKIE----SDK 205 (358)
T ss_pred EEEEecCch-HHHHHHHhcCCCcc--cccCCCCccc-ccc--c----------------------cccceeec----ccc
Confidence 999999997 55677765422110 0000000000 000 0 00000000 000
Q ss_pred ccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHH----hhccCCC
Q 004875 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMA----MKICKSH 327 (726)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~----~~~f~~~ 327 (726)
.. ....+..++..+ . .++++||||+++++++.+++.|++......+..+||++++.+|.+. ++.|+++
T Consensus 206 ~~---~~~~l~~l~~~~---~--~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~ 277 (358)
T TIGR01587 206 VG---EISSLERLLEFI---K--KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN 277 (358)
T ss_pred cc---CHHHHHHHHHHh---h--CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC
Confidence 00 011122222211 1 1369999999999999999999876655679999999999988764 7789888
Q ss_pred c-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCC--C---ceEEEeechh
Q 004875 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC--D---GQVYRLVTKS 401 (726)
Q Consensus 328 r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~--~---G~~~~L~s~~ 401 (726)
+ +|||||+++|+||||| +++||+ |+.+ ..++.||+||+||.+ . |.+|.++...
T Consensus 278 ~~~ilvaT~~~~~GiDi~-~~~vi~--------~~~~------------~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 278 EKFVIVATQVIEASLDIS-ADVMIT--------ELAP------------IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred CCeEEEECcchhceeccC-CCEEEE--------cCCC------------HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 8 9999999999999996 677775 4332 345699999999973 2 3777777654
Q ss_pred h
Q 004875 402 F 402 (726)
Q Consensus 402 ~ 402 (726)
+
T Consensus 337 ~ 337 (358)
T TIGR01587 337 E 337 (358)
T ss_pred C
Confidence 3
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=1.7e-28 Score=295.92 Aligned_cols=299 Identities=14% Similarity=0.178 Sum_probs=201.5
Q ss_pred CcHHHHHHHHHHHHcC------CcEEEEcCCCChHhHHHHHHH--HhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 27 PVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~------~~vii~a~TGSGKTt~ip~~l--le~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
..++.|.++++.+.++ .+++++|+||||||..+...+ .-.....++++.|++.+|.|+++.+...++. .+.
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~v 678 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN-WPV 678 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc-CCc
Confidence 4689999999999886 799999999999995443222 2122356788888888889988887764432 222
Q ss_pred eeeeeecccc----------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCC
Q 004875 99 EVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (726)
Q Consensus 99 ~Vgy~v~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~ 168 (726)
.++...++.. ......+|+|+||+.+ ...+.+.++++|||||+|. . . ......+...++
T Consensus 679 ~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahr-f-G----~~~~e~lk~l~~ 747 (1147)
T PRK10689 679 RIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHR-F-G----VRHKERIKAMRA 747 (1147)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhh-c-c----hhHHHHHHhcCC
Confidence 2332222211 0124679999999754 2334456899999999994 3 1 112233344567
Q ss_pred CceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCc
Q 004875 169 DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (726)
Q Consensus 169 ~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 248 (726)
+.++++||||+.+..+........ . ..++..+... ..++..++.
T Consensus 748 ~~qvLl~SATpiprtl~l~~~gl~--d-~~~I~~~p~~---r~~v~~~~~------------------------------ 791 (1147)
T PRK10689 748 DVDILTLTATPIPRTLNMAMSGMR--D-LSIIATPPAR---RLAVKTFVR------------------------------ 791 (1147)
T ss_pred CCcEEEEcCCCCHHHHHHHHhhCC--C-cEEEecCCCC---CCCceEEEE------------------------------
Confidence 889999999987665543322211 1 2232222211 111111100
Q ss_pred cccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc
Q 004875 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (726)
Q Consensus 249 ~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r 328 (726)
...... ....+...+.+ +++++||+|+.+.++.+++.|....++..+..+||+|++++|.+++..|++|+
T Consensus 792 --~~~~~~---~k~~il~el~r-----~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk 861 (1147)
T PRK10689 792 --EYDSLV---VREAILREILR-----GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 (1147)
T ss_pred --ecCcHH---HHHHHHHHHhc-----CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 000000 11122222221 37899999999999999999987766788999999999999999999999999
Q ss_pred -EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeech
Q 004875 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (726)
Q Consensus 329 -kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~ 400 (726)
+|||||+++|+|||+|++++||. +++.. + +-+++.||+||+||. ..|.||.+++.
T Consensus 862 ~~VLVaTdIierGIDIP~v~~VIi--------~~ad~----f-----glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 862 FNVLVCTTIIETGIDIPTANTIII--------ERADH----F-----GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCEEEECchhhcccccccCCEEEE--------ecCCC----C-----CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999999999999994 33321 1 235679999999999 78999988864
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=2.5e-28 Score=283.16 Aligned_cols=298 Identities=20% Similarity=0.246 Sum_probs=195.9
Q ss_pred CcHHHHHHHHHHHHcC------CcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 27 PVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~------~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
.+++.|.++++.+.++ .+.+++|+||||||..+...++.. ....+++..|++.+|.+.++.+.+.+. ..|-
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~-~~gi 313 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLA-PLGI 313 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhc-ccCc
Confidence 3689999999999865 258999999999997655444332 234688888999999999988876543 2344
Q ss_pred eeeeeecccc----------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCC
Q 004875 99 EVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (726)
Q Consensus 99 ~Vgy~v~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~ 168 (726)
.++...+... ......+|+|+|++.+.+ ...+.++++|||||+|.-.. +... .+.....
T Consensus 314 ~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~--~qr~----~l~~~~~ 382 (630)
T TIGR00643 314 EVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV--EQRK----KLREKGQ 382 (630)
T ss_pred EEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH--HHHH----HHHHhcc
Confidence 4444333211 123467999999987743 23456899999999994221 1111 1222222
Q ss_pred ---CceEEEeccCCCHHHHHHHH-hhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCC
Q 004875 169 ---DLRVVLMSATADITKYRDYF-RDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (726)
Q Consensus 169 ---~lklIlmSATl~~~~~~~~f-~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~ 244 (726)
+.++++||||+.+..+.... +.+ ....+...|.. + .++...++.
T Consensus 383 ~~~~~~~l~~SATp~prtl~l~~~~~l---~~~~i~~~p~~---r-~~i~~~~~~------------------------- 430 (630)
T TIGR00643 383 GGFTPHVLVMSATPIPRTLALTVYGDL---DTSIIDELPPG---R-KPITTVLIK------------------------- 430 (630)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHhcCCc---ceeeeccCCCC---C-CceEEEEeC-------------------------
Confidence 57899999998665544322 211 10111111110 0 011111000
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcH--------HHHHHHHHHhcCCCCCcEEEEecCCCCHHH
Q 004875 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTY--------YALEQQWHLMKPLSSFFKVHILHSSVDTEQ 316 (726)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~--------~~i~~l~~~L~~~~~~~~v~~lh~~l~~~e 316 (726)
..... .++..+..... .+++++||||.. ..++.+++.|.....++.+..+||+|++++
T Consensus 431 ------~~~~~-------~~~~~i~~~l~-~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 431 ------HDEKD-------IVYEFIEEEIA-KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ------cchHH-------HHHHHHHHHHH-hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 00001 11112221111 136899999976 346667777765446688999999999999
Q ss_pred HHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceE
Q 004875 317 ALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQV 394 (726)
Q Consensus 317 r~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~ 394 (726)
|..+++.|++|+ +|||||+++|+|||+|++++||. ||++.. +-+++.||+||+||. .+|.|
T Consensus 497 R~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~ 559 (630)
T TIGR00643 497 KEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAERF---------GLSQLHQLRGRVGRGDHQSYC 559 (630)
T ss_pred HHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCCcC---------CHHHHHHHhhhcccCCCCcEE
Confidence 999999999998 99999999999999999999998 887651 235669999999998 68999
Q ss_pred EEeec
Q 004875 395 YRLVT 399 (726)
Q Consensus 395 ~~L~s 399 (726)
|.++.
T Consensus 560 il~~~ 564 (630)
T TIGR00643 560 LLVYK 564 (630)
T ss_pred EEEEC
Confidence 99983
No 59
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=273.15 Aligned_cols=353 Identities=17% Similarity=0.249 Sum_probs=214.8
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----CCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
...++++.||.+++...+ ++++||++|||+|||......+++. ..++|++..|++.+..|....... .+... .
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~-~~~~~-~ 134 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSI-YLIPY-S 134 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhh-ccCcc-c
Confidence 456999999999999999 9999999999999996666655543 335788888887665444433332 22221 1
Q ss_pred eeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCC-CCceeEEEEcccccccccccHHHHHHHHHHhcCCCc-
Q 004875 99 EVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLN-ALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL- 170 (726)
Q Consensus 99 ~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~-l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~l- 170 (726)
..|.. +.. .......+|+|+||++|...+.+.... +..++++|||||| |.......-.+++.++......
T Consensus 135 ~T~~l-~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 135 VTGQL-GDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ceeec-cCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccc
Confidence 11111 111 112346799999999999988774333 4689999999999 7777667777776666554433
Q ss_pred eEEEeccCC--CHHHHHHHHhhcCCCcceeEEEe-----cCCCccceeeceeh------------hHHHHHHHhc---c-
Q 004875 171 RVVLMSATA--DITKYRDYFRDLGRGERVEVLAI-----PSTNQRTIFQRRVS------------YLEQVTELLG---V- 227 (726)
Q Consensus 171 klIlmSATl--~~~~~~~~f~~~~~~~~~~v~~~-----~~~~~~~~~~~~~~------------yl~~~~~~~~---~- 227 (726)
|+|++|||+ +.+...++...+.-.-.+..... ........+++++. +++.....+. .
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 999999998 55666666665411100000000 00000011111100 0000000000 0
Q ss_pred ----------------------------------------------CCCCc------------ccccccccc---CCC--
Q 004875 228 ----------------------------------------------DHGMT------------SELSSLRYC---SGP-- 244 (726)
Q Consensus 228 ----------------------------------------------~~~~~------------~~~~~~~y~---~~~-- 244 (726)
.++.+ .+....+|. .+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 00000 000000000 000
Q ss_pred CC-----------Cccccc-cChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC-CCCCcEEEEec--
Q 004875 245 SP-----------SMANAE-IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILH-- 309 (726)
Q Consensus 245 ~~-----------~~~~~~-~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~-~~~~~~v~~lh-- 309 (726)
.+ ...+.. ..+....+ .+.+.......+ ..++|||+.+++.++.+...|.+ ...+++...+-
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l-~~~l~e~f~~~~--dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKL-VEILVEQFEQNP--DSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHH-HHHHHHHhhcCC--CccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 00 000000 01111122 222222222222 36999999999999999998873 22223322222
Q ss_pred ------CCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHH
Q 004875 310 ------SSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 382 (726)
Q Consensus 310 ------~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR 382 (726)
.+|++.+|+++++.|+.|+ +|||||+|+|+|+||+.|+.||- ||..++.... +||
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~snpIrm----------IQr 511 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSSNPIRM----------VQR 511 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCccHHHH----------HHH
Confidence 3789999999999999999 99999999999999999999998 9999876666 999
Q ss_pred cCCCCCCCCceEEEeechhh
Q 004875 383 RGRTGRTCDGQVYRLVTKSF 402 (726)
Q Consensus 383 ~GRaGR~~~G~~~~L~s~~~ 402 (726)
+|| ||.+.|+|+.|++...
T Consensus 512 rGR-gRa~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 512 RGR-GRARNSKCVLLTTGSE 530 (746)
T ss_pred hcc-ccccCCeEEEEEcchh
Confidence 999 9999999999999543
No 60
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.1e-28 Score=270.67 Aligned_cols=307 Identities=20% Similarity=0.186 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCChHh--HHHHHHHHhcCCCcEEEecch-HHHHHHHHHHHHhhcCCccCCeeeeeecc
Q 004875 30 SLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPR-RFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (726)
Q Consensus 30 ~~Q~~il~~i~~~~~vii~a~TGSGKT--t~ip~~lle~~~~~Iivt~Pr-rlaa~~~a~~va~~~~~~lg~~Vgy~v~~ 106 (726)
+-|.++++++.+++++++..|||+||| +|+|..+.+ +..+|+.|- .+.-.|+..-. ..|....-.-+-....
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~---G~TLVVSPLiSLM~DQV~~l~--~~Gi~A~~lnS~l~~~ 94 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE---GLTLVVSPLISLMKDQVDQLE--AAGIRAAYLNSTLSRE 94 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC---CCEEEECchHHHHHHHHHHHH--HcCceeehhhcccCHH
Confidence 348999999999999999999999999 899998873 245555552 22223333322 2222111000000011
Q ss_pred c------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccc-cHHHHH--HHHHHhcCCCceEEEecc
Q 004875 107 S------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES-DLVLVC--VKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 107 ~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~-d~ll~~--lk~l~~~~~~lklIlmSA 177 (726)
+ .......+++|.+|++|...-..+.+.-..+++++|||||+-+-.. ||...+ +..+....++..++.+||
T Consensus 95 e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTA 174 (590)
T COG0514 95 ERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTA 174 (590)
T ss_pred HHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeC
Confidence 1 1123457999999999975433322223489999999999866443 676665 345556677999999999
Q ss_pred CCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhH
Q 004875 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (726)
Q Consensus 178 Tl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (726)
|.+.....+....++-..+..+..-..+++. .|.+.. .. ..
T Consensus 175 TA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi-~~~v~~-----------------------------~~--------~~- 215 (590)
T COG0514 175 TATPRVRDDIREQLGLQDANIFRGSFDRPNL-ALKVVE-----------------------------KG--------EP- 215 (590)
T ss_pred CCChHHHHHHHHHhcCCCcceEEecCCCchh-hhhhhh-----------------------------cc--------cH-
Confidence 9998877777766554433222222221110 000000 00 00
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
..++. .+....+...++.||||.|+..++.+++.|... ++.+.++|++|+.++|..+.+.|..+. +|||||+.
T Consensus 216 ---~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~A 289 (590)
T COG0514 216 ---SDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNA 289 (590)
T ss_pred ---HHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Confidence 00111 222111222367799999999999999999954 699999999999999999999999888 99999999
Q ss_pred ccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 337 ae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
+++|||-|||++||+ ||.|.++++| +|-+|||||. .|..|+.||++.+..
T Consensus 290 FGMGIdKpdVRfViH--------~~lP~s~EsY----------yQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 290 FGMGIDKPDVRFVIH--------YDLPGSIESY----------YQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred ccCccCCCCceEEEE--------ecCCCCHHHH----------HHHHhhccCCCCcceEEEeeccccHH
Confidence 999999999999999 9999988877 9999999999 789999999987753
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=2.4e-28 Score=295.86 Aligned_cols=303 Identities=21% Similarity=0.259 Sum_probs=185.0
Q ss_pred EEcCCCChHhHHHHHHHHh----c-----------CCCcEEEecchHHHHHHHHHHHHh----------hcCC-ccCCee
Q 004875 47 IVGETGCGKSSQVPQFLLA----E-----------NMEPILCTQPRRFAVVAVAKMVAK----------GRNC-ELGGEV 100 (726)
Q Consensus 47 i~a~TGSGKTt~ip~~lle----~-----------~~~~Iivt~Prrlaa~~~a~~va~----------~~~~-~lg~~V 100 (726)
|++|||||||..+...+++ . ...+++++.|.+.++.++.+.+.. .++. ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999665544332 1 123577777777777777776542 1111 233445
Q ss_pred eeeecccc------ccCCCCeEEEEChHHHHHHHHhcC-CCCCceeEEEEccccccccccc---HHHHHHHHHHhc-CCC
Q 004875 101 GYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESD---LVLVCVKQLLLK-KND 169 (726)
Q Consensus 101 gy~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~-l~l~~~~~VIIDEaHeR~~~~d---~ll~~lk~l~~~-~~~ 169 (726)
+...+... .....++|+|+||+.|..++.++. ..+.++++|||||+|+ ..+.+ -+...+.++... ..+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~-L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA-VAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-hcccccccHHHHHHHHHHHhCCCC
Confidence 54433211 224568999999999988765432 2456999999999995 33332 122233333333 356
Q ss_pred ceEEEeccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceeh-hHHHHHHHhccCCCCccccccccccCCCCCC
Q 004875 170 LRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVS-YLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (726)
Q Consensus 170 lklIlmSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 247 (726)
.|+|++|||+ +.+.+.+|+.. ..++.++..+.. +..+.++. +.++..+.... ..+ .......
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g---~~pv~Iv~~~~~---r~~~l~v~vp~~d~~~~~~~----~~~------~~~~~~~ 223 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGG---DRPVTVVNPPAM---RHPQIRIVVPVANMDDVSSV----ASG------TGEDSHA 223 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcC---CCCEEEECCCCC---cccceEEEEecCchhhcccc----ccc------cccccch
Confidence 8999999998 67788888863 223444432221 11121111 01110000000 000 0000000
Q ss_pred ccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCC--------------------------
Q 004875 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------- 301 (726)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~-------------------------- 301 (726)
.....+.+.+. ..++..+.. ++++|||+||++.++.++..|++...
T Consensus 224 ~r~~~i~~~v~---~~il~~i~~-----~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1490)
T PRK09751 224 GREGSIWPYIE---TGILDEVLR-----HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNR 295 (1490)
T ss_pred hhhhhhhHHHH---HHHHHHHhc-----CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhc
Confidence 00001111111 122222211 36899999999999999988864311
Q ss_pred -----CcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeec
Q 004875 302 -----FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVS 375 (726)
Q Consensus 302 -----~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS 375 (726)
.+.+..|||+|++++|..+++.|++|+ ++||||+.+|.||||++|++||+ |+.|. |
T Consensus 296 ~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~gsP~----------s 357 (1490)
T PRK09751 296 VQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------VATPL----------S 357 (1490)
T ss_pred cccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------eCCCC----------C
Confidence 123678999999999999999999999 99999999999999999999999 88766 5
Q ss_pred HHhHHHHcCCCCCCCCc
Q 004875 376 QSQAEQRRGRTGRTCDG 392 (726)
Q Consensus 376 ~a~~~QR~GRaGR~~~G 392 (726)
.++|+||+|||||...|
T Consensus 358 Vas~LQRiGRAGR~~gg 374 (1490)
T PRK09751 358 VASGLQRIGRAGHQVGG 374 (1490)
T ss_pred HHHHHHHhCCCCCCCCC
Confidence 56669999999998433
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=1.7e-27 Score=273.92 Aligned_cols=329 Identities=16% Similarity=0.130 Sum_probs=190.7
Q ss_pred CcHHHHHHHHHHHHcCC-cEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCcc----
Q 004875 27 PVMSLREKIVEKVLENR-VTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCEL---- 96 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~-~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~l---- 96 (726)
..+++|.++++.+.+|+ ++++.+|||||||..+..+++.. ...+++++.|+|.++.|+++.+.... ..+
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~-k~l~~~~ 93 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIG-ERLPDVP 93 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHH-HHhcccc
Confidence 37999999999999997 67778999999997665554422 12477778888888887766554321 111
Q ss_pred -------------------CCeeeeeeccc------cccCCCCeEEEEChHHHHHHHHh---------cCCC---CCcee
Q 004875 97 -------------------GGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRD---------RGLN---ALKYK 139 (726)
Q Consensus 97 -------------------g~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~---------~~l~---l~~~~ 139 (726)
.-.+...+++. ......++|+|+|++++.+.... .++. +.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~ 173 (844)
T TIGR02621 94 EVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDA 173 (844)
T ss_pred hhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccce
Confidence 01122222221 22345789999997666543321 0111 45899
Q ss_pred EEEEcccccccccccHHHHHHHHHHhcCC---CceEEEeccCCCHHHH--HHHHhhcCCCcceeEEEecCCCccceeece
Q 004875 140 VIILDEVHERSVESDLVLVCVKQLLLKKN---DLRVVLMSATADITKY--RDYFRDLGRGERVEVLAIPSTNQRTIFQRR 214 (726)
Q Consensus 140 ~VIIDEaHeR~~~~d~ll~~lk~l~~~~~---~lklIlmSATl~~~~~--~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~ 214 (726)
+||+||||..+...+.+..+++.+. +.+ +.|+++||||++.+.. ...+.. .+...++. ... ...
T Consensus 174 ~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~--~p~~i~V~--~~~----l~a-- 242 (844)
T TIGR02621 174 LIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSA--EDYKHPVL--KKR----LAA-- 242 (844)
T ss_pred EEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHcc--CCceeecc--ccc----ccc--
Confidence 9999999943333333333333321 122 3799999999965422 222221 11111110 000 000
Q ss_pred ehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHH
Q 004875 215 VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWH 294 (726)
Q Consensus 215 ~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~ 294 (726)
... ..|... ........++..+ ..+... .++++||||||+++++.+++
T Consensus 243 -------------------~ki-~q~v~v--------~~e~Kl~~lv~~L-~~ll~e---~g~~vLVF~NTv~~Aq~L~~ 290 (844)
T TIGR02621 243 -------------------KKI-VKLVPP--------SDEKFLSTMVKEL-NLLMKD---SGGAILVFCRTVKHVRKVFA 290 (844)
T ss_pred -------------------cce-EEEEec--------ChHHHHHHHHHHH-HHHHhh---CCCcEEEEECCHHHHHHHHH
Confidence 000 000000 0000111112122 122211 24789999999999999999
Q ss_pred HhcCCCCCcEEEEecCCCCHHHHH-----HHhhccCC----C--------cEEEEEcccccccccCCCeeEEEeCCCcee
Q 004875 295 LMKPLSSFFKVHILHSSVDTEQAL-----MAMKICKS----H--------RKVILATNIAESSVTIPKVAYVIDSCRSLQ 357 (726)
Q Consensus 295 ~L~~~~~~~~v~~lh~~l~~~er~-----~~~~~f~~----~--------rkVlvaTniae~GIdip~v~~VId~G~~k~ 357 (726)
.|+..+ + ..+||.|++.+|. .+++.|++ + .+|||||+++|+||||+. ++||+
T Consensus 291 ~L~~~g--~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~------ 359 (844)
T TIGR02621 291 KLPKEK--F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC------ 359 (844)
T ss_pred HHHhcC--C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE------
Confidence 998543 3 8999999999999 67777865 2 379999999999999987 67775
Q ss_pred eeecCCCCccccceEeecHHhHHHHcCCCCCCCC--ceEEEeechhhHh-hccCCCCCcccccChHHHHH
Q 004875 358 VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD--GQVYRLVTKSFFG-TLEDHECPAILRLSLRLQVL 424 (726)
Q Consensus 358 ~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~--G~~~~L~s~~~~~-~l~~~~~pei~r~~L~~~iL 424 (726)
+..+ . .+|+||+||+||.+. |..+.+++.+.-. .-...-.|++++..+..+.+
T Consensus 360 --d~aP--~----------esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~ 415 (844)
T TIGR02621 360 --DLAP--F----------ESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKK 415 (844)
T ss_pred --CCCC--H----------HHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHH
Confidence 4322 2 456999999999833 3334444331111 11111236777665554433
No 63
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.96 E-value=1.5e-29 Score=256.91 Aligned_cols=308 Identities=19% Similarity=0.271 Sum_probs=213.1
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHh--HHHHHH--HHhcCC--------C--cEEEecchHHHHHHHHHHHHhh-
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQF--LLAENM--------E--PILCTQPRRFAVVAVAKMVAKG- 91 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKT--t~ip~~--lle~~~--------~--~Iivt~Prrlaa~~~a~~va~~- 91 (726)
-.+++|-+-++.++.++++|-.|-|||||| +.+|.+ .++... + .+++++.|++| .+...-+...
T Consensus 192 ~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELA-rQt~~iie~~~ 270 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELA-RQTHDIIEQYV 270 (610)
T ss_pred CCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHH-HHHHHHHHHHH
Confidence 346788888999999999999999999999 334443 344321 1 45566666655 4433322211
Q ss_pred -----cCCcc---CCeee-eeec-cccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHH
Q 004875 92 -----RNCEL---GGEVG-YHIG-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVK 161 (726)
Q Consensus 92 -----~~~~l---g~~Vg-y~v~-~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk 161 (726)
.|.+. +-.+| ..++ +-+.+..+.+|+++|||+|.+.+..+.+++.-+.++.+|||+ |+++..|-..+-.
T Consensus 271 ~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir~ 349 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIRT 349 (610)
T ss_pred HHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHHH
Confidence 11110 00011 1111 224457889999999999999998887777789999999999 9999988766644
Q ss_pred HHHhcCCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccce--eeceehhHHHHHHHhccCCCCcccccccc
Q 004875 162 QLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTI--FQRRVSYLEQVTELLGVDHGMTSELSSLR 239 (726)
Q Consensus 162 ~l~~~~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~--~~~~~~yl~~~~~~~~~~~~~~~~~~~~~ 239 (726)
.+-......|.+++|||++.. +..|-... --.|+.+ ++ ++..... .-.++.|+.+-
T Consensus 350 iF~~FK~QRQTLLFSATMP~K-IQ~FAkSA-LVKPvtv-NV-GRAGAAsldViQevEyVkqE------------------ 407 (610)
T KOG0341|consen 350 IFSFFKGQRQTLLFSATMPKK-IQNFAKSA-LVKPVTV-NV-GRAGAASLDVIQEVEYVKQE------------------ 407 (610)
T ss_pred HHHHHhhhhheeeeeccccHH-HHHHHHhh-cccceEE-ec-ccccccchhHHHHHHHHHhh------------------
Confidence 444444567899999999743 44443321 1111111 11 1100000 00111121110
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHH
Q 004875 240 YCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALM 319 (726)
Q Consensus 240 y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~ 319 (726)
..+..++..+.++ ..++|||+..+.+++.+.++|. ..++.+..+||+-++++|..
T Consensus 408 -------------------aKiVylLeCLQKT----~PpVLIFaEkK~DVD~IhEYLL--lKGVEavaIHGGKDQedR~~ 462 (610)
T KOG0341|consen 408 -------------------AKIVYLLECLQKT----SPPVLIFAEKKADVDDIHEYLL--LKGVEAVAIHGGKDQEDRHY 462 (610)
T ss_pred -------------------hhhhhHHHHhccC----CCceEEEeccccChHHHHHHHH--HccceeEEeecCcchhHHHH
Confidence 1122344434333 3589999999999999999987 45689999999999999999
Q ss_pred HhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEe
Q 004875 320 AMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (726)
Q Consensus 320 ~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L 397 (726)
.++.|+.|+ .|+||||+|..|+|+|+|.+||| ||.|..++.| +||+||+||. ..|.+..+
T Consensus 463 ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIENY----------VHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 463 AIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIENY----------VHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred HHHHHhcCCCceEEEecchhccCCCccchhhcc--------CCChHHHHHH----------HHHhcccCCCCCcceeeee
Confidence 999999888 99999999999999999999999 9999988777 9999999999 67999999
Q ss_pred echh
Q 004875 398 VTKS 401 (726)
Q Consensus 398 ~s~~ 401 (726)
+.+.
T Consensus 525 INK~ 528 (610)
T KOG0341|consen 525 INKN 528 (610)
T ss_pred eccc
Confidence 8874
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.3e-28 Score=256.21 Aligned_cols=316 Identities=19% Similarity=0.279 Sum_probs=202.8
Q ss_pred CcHHHHHHHHHHHH---------cCCcEEEEcCCCChHhHHHHHHHHhcC----CC--cEEEecchHHHHHHHHHHHHhh
Q 004875 27 PVMSLREKIVEKVL---------ENRVTLIVGETGCGKSSQVPQFLLAEN----ME--PILCTQPRRFAVVAVAKMVAKG 91 (726)
Q Consensus 27 Pi~~~Q~~il~~i~---------~~~~vii~a~TGSGKTt~ip~~lle~~----~~--~Iivt~Prrlaa~~~a~~va~~ 91 (726)
..+++|..+++.++ ..+++.|.||||||||..+...+.+.. .. +.+++.|.+.++.|+++.+...
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 34688988988884 247999999999999954444443321 11 4555566666677777766543
Q ss_pred cCCccCCeeeeeecccc------cc-CC----CCeEEEEChHHHHHHHHh-cCCCCCceeEEEEcccccccccccHH---
Q 004875 92 RNCELGGEVGYHIGHSK------HL-SE----RSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESDLV--- 156 (726)
Q Consensus 92 ~~~~lg~~Vgy~v~~~~------~~-~~----~~~Iiv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHeR~~~~d~l--- 156 (726)
. ...|-.|+...++.+ +. .. ..+|+|+|||+|.+++.+ .++.+.+..++|||||| |.++.-|.
T Consensus 239 ~-~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl 316 (620)
T KOG0350|consen 239 N-SGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWL 316 (620)
T ss_pred c-cCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHH
Confidence 3 233444554433321 11 12 348999999999999984 67788899999999999 77664321
Q ss_pred HHH---H---------HHHHhc-------------------CCCceEEEeccCC--CHHHHHHHHhhcCCCcceeEEEec
Q 004875 157 LVC---V---------KQLLLK-------------------KNDLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIP 203 (726)
Q Consensus 157 l~~---l---------k~l~~~-------------------~~~lklIlmSATl--~~~~~~~~f~~~~~~~~~~v~~~~ 203 (726)
..+ + ..++.. .+.+.-+++|||+ ++.++.++--...+ +..+.
T Consensus 317 ~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr-----l~~v~ 391 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR-----LFHVS 391 (620)
T ss_pred HHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc-----eEEee
Confidence 111 1 111111 2334456677775 56666655432110 11010
Q ss_pred CCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEc
Q 004875 204 STNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFL 283 (726)
Q Consensus 204 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~ 283 (726)
... ...|. ++. .+...+.. .+..+.+ ..+...|+... ..++|+|+
T Consensus 392 ~~~-~~rys-----lp~--------------~l~~~~vv------~~~~~kp------l~~~~lI~~~k---~~r~lcf~ 436 (620)
T KOG0350|consen 392 KPL-IGRYS-----LPS--------------SLSHRLVV------TEPKFKP------LAVYALITSNK---LNRTLCFV 436 (620)
T ss_pred ccc-ceeee-----cCh--------------hhhhceee------cccccch------HhHHHHHHHhh---cceEEEEe
Confidence 000 00000 000 00000000 0000111 12222333333 35899999
Q ss_pred CcHHHHHHHHHHhc-CC-CCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeee
Q 004875 284 PTYYALEQQWHLMK-PL-SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFW 360 (726)
Q Consensus 284 ~~~~~i~~l~~~L~-~~-~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~y 360 (726)
++.+.+.+++..|. .. ..++.+-.+.|+++...|.+.++.|..|. +|+||+|++++|||+-+|+.||+ |
T Consensus 437 ~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Y 508 (620)
T KOG0350|consen 437 NSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------Y 508 (620)
T ss_pred cchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------c
Confidence 99999999998886 22 23456667899999999999999999888 99999999999999999999999 9
Q ss_pred cCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 361 DVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 361 d~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
|+|.....| +||+||+||. +.|.||.|.++++
T Consensus 509 d~P~~~kty----------VHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 509 DPPASDKTY----------VHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred CCCchhhHH----------HHhhcccccccCCceEEEeecccc
Confidence 999977666 9999999999 7899999998754
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=4.3e-26 Score=258.05 Aligned_cols=316 Identities=17% Similarity=0.149 Sum_probs=196.7
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHH---HHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~---lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
...++++|.++++.+..+++.++++|||+|||..+... +++....+++++.|++.++.|..+++.+......+ .++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~-~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE-AMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc-cee
Confidence 36789999999999999999999999999999655433 24444447888889999999998888764432211 121
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCH
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~ 181 (726)
...+.. ......+|+|+|++.+.+.... .+.++++||||||| +....+ +..+++.+ .+..+++++|||+..
T Consensus 191 ~i~~g~-~~~~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH-~~~~~~-~~~il~~~---~~~~~~lGLTATp~~ 261 (501)
T PHA02558 191 KIYSGT-AKDTDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECH-LFTGKS-LTSIITKL---DNCKFKFGLTGSLRD 261 (501)
T ss_pred EEecCc-ccCCCCCEEEeeHHHHhhchhh---hccccCEEEEEchh-cccchh-HHHHHHhh---hccceEEEEeccCCC
Confidence 111111 1124578999999999765422 24589999999999 444332 22333322 234579999999843
Q ss_pred HH-----HHHHHhhcCCCcceeEEEecC-CCcccee-----eceehhHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 004875 182 TK-----YRDYFRDLGRGERVEVLAIPS-TNQRTIF-----QRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (726)
Q Consensus 182 ~~-----~~~~f~~~~~~~~~~v~~~~~-~~~~~~~-----~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 250 (726)
.. +..+|+... ..+ .... ...+... .+...+-+....... ...|. .....
T Consensus 262 ~~~~~~~~~~~fG~i~----~~v-~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~----------~~~~~----~~~~~ 322 (501)
T PHA02558 262 GKANILQYVGLFGDIF----KPV-TTSQLMEEGQVTDLKINSIFLRYPDEDRVKLK----------GEDYQ----EEIKY 322 (501)
T ss_pred ccccHHHHHHhhCCce----EEe-cHHHHHhCCCcCCceEEEEeccCCHHHhhhhc----------ccchH----HHHHH
Confidence 22 222333210 000 0000 0000000 000000000000000 00000 00000
Q ss_pred cccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-E
Q 004875 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (726)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-k 329 (726)
......-..++.+++..+.. .++++|||+...++++.+++.|... +..+..+||+++.++|..+++.|+++. .
T Consensus 323 l~~~~~Rn~~I~~~~~~~~~----~~~~~lV~~~~~~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~~~~ 396 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLAK----KGENTFVMFKYVEHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGGKGI 396 (501)
T ss_pred HhccHHHHHHHHHHHHHHHh----cCCCEEEEEEEHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCCCCe
Confidence 00011122334444444331 2368899999999999999999854 478999999999999999999999888 8
Q ss_pred EEEEc-ccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCce
Q 004875 330 VILAT-NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ 393 (726)
Q Consensus 330 VlvaT-niae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~ 393 (726)
||||| +++++|+|+|++++||. ++|.. |+..+.||+||+||..+|+
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl--------~~p~~----------s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIF--------AHPSK----------SKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEEcceeccccccccccEEEE--------ecCCc----------chhhhhhhhhccccCCCCC
Confidence 99998 89999999999999997 67666 4445599999999997765
No 66
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=259.98 Aligned_cols=449 Identities=16% Similarity=0.162 Sum_probs=270.8
Q ss_pred cHHHHHHHHHHHH-cCCcEEEEcCCCChHhHHHHHHHHhcC------------CCcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 28 VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 28 i~~~Q~~il~~i~-~~~~vii~a~TGSGKTt~ip~~lle~~------------~~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
+..+|.++++... .+.+.+||||||||||-.+.+.++... .-+|+++.|.+.+|..+++.+.+.++
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~- 189 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA- 189 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-
Confidence 4578999999875 678999999999999955544444211 12799999999888888888887665
Q ss_pred ccCCeeeeeeccccc---cCCCCeEEEEChHHHH---HHHHhcCCCCCceeEEEEcccc----cccccccHHHHHH-HHH
Q 004875 95 ELGGEVGYHIGHSKH---LSERSKIVFKTAGVLL---DEMRDRGLNALKYKVIILDEVH----ERSVESDLVLVCV-KQL 163 (726)
Q Consensus 95 ~lg~~Vgy~v~~~~~---~~~~~~Iiv~T~g~Ll---~~l~~~~l~l~~~~~VIIDEaH----eR~~~~d~ll~~l-k~l 163 (726)
.+|-.|+-..+.... .-.+++|+++||+..- |.-..+.-....+.+|||||+| +|+.-.+.+.... +.+
T Consensus 190 ~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~v 269 (1230)
T KOG0952|consen 190 PLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLV 269 (1230)
T ss_pred cccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHH
Confidence 345445433222111 1357999999998763 2222221123489999999999 2443333333322 222
Q ss_pred HhcCCCceEEEeccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccC
Q 004875 164 LLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (726)
Q Consensus 164 ~~~~~~lklIlmSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~ 242 (726)
-.....+|+|++|||+ |-++++.|++... .. ..|.....|.+- ++...+..
T Consensus 270 essqs~IRivgLSATlPN~eDvA~fL~vn~---~~-----------glfsFd~~yRPv--------------pL~~~~iG 321 (1230)
T KOG0952|consen 270 ESSQSMIRIVGLSATLPNYEDVARFLRVNP---YA-----------GLFSFDQRYRPV--------------PLTQGFIG 321 (1230)
T ss_pred HhhhhheEEEEeeccCCCHHHHHHHhcCCC---cc-----------ceeeeccccccc--------------ceeeeEEe
Confidence 2445679999999996 8899999987410 01 111111111110 00000000
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC------------CC--C------
Q 004875 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL------------SS--F------ 302 (726)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~------------~~--~------ 302 (726)
.+.. ..........+...+-+...... +.+++|||+++.+..+.++.|.+. .. +
T Consensus 322 ~k~~--~~~~~~~~~d~~~~~kv~e~~~~----g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf 395 (1230)
T KOG0952|consen 322 IKGK--KNRQQKKNIDEVCYDKVVEFLQE----GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELF 395 (1230)
T ss_pred eecc--cchhhhhhHHHHHHHHHHHHHHc----CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHH
Confidence 0000 00000111111111222222221 369999999999988888877421 00 1
Q ss_pred -cEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHH
Q 004875 303 -FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE 380 (726)
Q Consensus 303 -~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~ 380 (726)
..+..+|+||...+|..+.+.|.+|. +|++||.+++.|+++|+-.++|- ....||+..+. ..-.+-...+
T Consensus 396 ~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~ydsskg~----f~dlgilDVl 467 (1230)
T KOG0952|consen 396 QQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVYDSSKGS----FVDLGILDVL 467 (1230)
T ss_pred HhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----CCcccccccCc----eeeehHHHHH
Confidence 35678999999999999999999988 99999999999999999888883 34558877642 1223556779
Q ss_pred HHcCCCCCC---CCceEEEeechh---hHhhccCCCCC---------------cccc---cChHHHHHHHhhhh--cccC
Q 004875 381 QRRGRTGRT---CDGQVYRLVTKS---FFGTLEDHECP---------------AILR---LSLRLQVLLICCAE--SKAI 434 (726)
Q Consensus 381 QR~GRaGR~---~~G~~~~L~s~~---~~~~l~~~~~p---------------ei~r---~~L~~~iL~l~~~~--~~~l 434 (726)
|..|||||. ..|..+.+-+.+ .|.++-..+.| ||.- ++.++.+=-|++-- .+--
T Consensus 468 QifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~ 547 (1230)
T KOG0952|consen 468 QIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMR 547 (1230)
T ss_pred HHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEec
Confidence 999999999 468777776654 34454433332 2211 11111111111000 0000
Q ss_pred CChhhh--ccc-CCCCCC-----HHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhcc-cCC
Q 004875 435 SDPKVL--LQK-ALDPPY-----PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE-IGM 505 (726)
Q Consensus 435 ~~~~~~--~~~-~l~pP~-----~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~-~~c 505 (726)
..|... ... ...-|. .+.+..++..|.....+--+..+|.+..|++||.|+.+.+..+..+.++.... +--
T Consensus 548 KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~s 627 (1230)
T KOG0952|consen 548 KNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYS 627 (1230)
T ss_pred cChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCC
Confidence 001000 001 111222 23466677777766555332234777899999999999999999999999887 667
Q ss_pred HHHHHHHHHHhccC
Q 004875 506 LREGILLGILMDTQ 519 (726)
Q Consensus 506 ~~e~l~i~a~ls~~ 519 (726)
.++++-++++-+..
T Consensus 628 e~~iL~lis~aeEf 641 (1230)
T KOG0952|consen 628 EDDILALISMAEEF 641 (1230)
T ss_pred HHHHHHHHHhhHhh
Confidence 78888888886543
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=1.1e-25 Score=243.84 Aligned_cols=310 Identities=14% Similarity=0.135 Sum_probs=175.7
Q ss_pred HHHHHHHHHHcCC--cEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcC-------CccCCeee
Q 004875 31 LREKIVEKVLENR--VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-------CELGGEVG 101 (726)
Q Consensus 31 ~Q~~il~~i~~~~--~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~-------~~lg~~Vg 101 (726)
+|.++++++.+++ ++++++|||||||..+...++.... +.+++.|.+.++.+..+++...+. ..++...|
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~-~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g 79 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGEN-DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSK 79 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCC-CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecC
Confidence 5899999998776 4889999999999777666665443 456666777777777777665542 11111111
Q ss_pred eeec--------------cc--------cccCCCCeEEEEChHHHHHHHHhc---C-C----CCCceeEEEEcccccccc
Q 004875 102 YHIG--------------HS--------KHLSERSKIVFKTAGVLLDEMRDR---G-L----NALKYKVIILDEVHERSV 151 (726)
Q Consensus 102 y~v~--------------~~--------~~~~~~~~Iiv~T~g~Ll~~l~~~---~-l----~l~~~~~VIIDEaHeR~~ 151 (726)
-... ++ ......+.|+++||+++...+... + . .+.++++|||||+|+.+.
T Consensus 80 ~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 80 ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 1000 00 001235678888899987654321 1 0 135899999999998664
Q ss_pred ccc-HHH---HHHHHHHhcCCCceEEEeccCCCHHHHHHHHhhcC-CCcceeEEEecCCCccceeeceehhHHHHHHHhc
Q 004875 152 ESD-LVL---VCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLG-RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLG 226 (726)
Q Consensus 152 ~~d-~ll---~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~~~~-~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~ 226 (726)
... .++ .....+.......++|+||||++.. +.+++...+ .+ .++..+++.. ..++- + ++......
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~~--~~~~~v~g~~--~~~~~---~-~~~~~~~~ 230 (357)
T TIGR03158 160 KQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA-LILRLQNAKQAG--VKIAPIDGEK--YQFPD---N-PELEADNK 230 (357)
T ss_pred ccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHhccccC--ceeeeecCcc--cccCC---C-hhhhcccc
Confidence 332 222 2333222223357999999999864 444443321 11 2333333320 00000 0 00000000
Q ss_pred cCCCCcc--ccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhC-CCCCCcEEEEcCcHHHHHHHHHHhcCCCCCc
Q 004875 227 VDHGMTS--ELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNE-SDIEKSILVFLPTYYALEQQWHLMKPLSSFF 303 (726)
Q Consensus 227 ~~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~-~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~ 303 (726)
. .+... ......+.. .+ .... +.+..+...+.+.. ...++++||||+++.+++.+++.|+..+.++
T Consensus 231 ~-~~~~~~~~~i~~~~~~--~~-----~~~~---~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~ 299 (357)
T TIGR03158 231 T-QSFRPVLPPVELELIP--AP-----DFKE---EELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGD 299 (357)
T ss_pred c-cccceeccceEEEEEe--CC-----chhH---HHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCc
Confidence 0 00000 000000100 00 0111 11112222221111 1123689999999999999999998655557
Q ss_pred EEEEecCCCCHHHHHHHhhccCCCcEEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHc
Q 004875 304 KVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (726)
Q Consensus 304 ~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~ 383 (726)
.+..+||.+++.+|.+.. ..+|+|||+++|+|||+|++ +|| ++ +. +..+|.||+
T Consensus 300 ~~~~l~g~~~~~~R~~~~-----~~~iLVaTdv~~rGiDi~~~-~vi---------~~-p~----------~~~~yiqR~ 353 (357)
T TIGR03158 300 DIGRITGFAPKKDRERAM-----QFDILLGTSTVDVGVDFKRD-WLI---------FS-AR----------DAAAFWQRL 353 (357)
T ss_pred eEEeeecCCCHHHHHHhc-----cCCEEEEecHHhcccCCCCc-eEE---------EC-CC----------CHHHHhhhc
Confidence 888999999999887543 22899999999999999987 565 44 33 345669999
Q ss_pred CCCC
Q 004875 384 GRTG 387 (726)
Q Consensus 384 GRaG 387 (726)
||+|
T Consensus 354 GR~g 357 (357)
T TIGR03158 354 GRLG 357 (357)
T ss_pred ccCC
Confidence 9998
No 68
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=1.5e-25 Score=268.09 Aligned_cols=359 Identities=20% Similarity=0.250 Sum_probs=221.7
Q ss_pred CCccCCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH---hcCCCcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 18 FTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 18 ~~~~~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll---e~~~~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
.|......+..++||.+++..+.++ +++|++|||+|||.++...+. ....++++++.|++.++.+.++.+...++.
T Consensus 6 ~~~~~~~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 6 HPLIKPNTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CCccCcCcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 3444456688899999999988876 899999999999975544433 333467888888888888888887776554
Q ss_pred ccCCeeeeeecccc-----ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCC
Q 004875 95 ELGGEVGYHIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (726)
Q Consensus 95 ~lg~~Vgy~v~~~~-----~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~ 169 (726)
. +..++...+... ....+.+|+|+||+++...+..+.+.+.++++||||||| |.........+.+......+.
T Consensus 85 ~-~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 85 P-EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred C-CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCC
Confidence 2 112221111111 123467899999999999887777667799999999999 555443334445555555566
Q ss_pred ceEEEeccCC--CHHHHHHHHhhcCCCc------------------ceeEEEecCCCccc-eeeceehhHHHHHHH---h
Q 004875 170 LRVVLMSATA--DITKYRDYFRDLGRGE------------------RVEVLAIPSTNQRT-IFQRRVSYLEQVTEL---L 225 (726)
Q Consensus 170 lklIlmSATl--~~~~~~~~f~~~~~~~------------------~~~v~~~~~~~~~~-~~~~~~~yl~~~~~~---~ 225 (726)
.++++||||+ +.+.+......++... .+..+.++...... ....-..+++..... .
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999997 4445555554432110 01111111000000 000000000000000 0
Q ss_pred ccCCCCcc-----ccc--------------------------------------------cccccC-----C--CCCCc-
Q 004875 226 GVDHGMTS-----ELS--------------------------------------------SLRYCS-----G--PSPSM- 248 (726)
Q Consensus 226 ~~~~~~~~-----~~~--------------------------------------------~~~y~~-----~--~~~~~- 248 (726)
+....... +.. -..|.. . ..+..
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 00000000 000 000000 0 00000
Q ss_pred -----cc------------cccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCC
Q 004875 249 -----AN------------AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS 311 (726)
Q Consensus 249 -----~~------------~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~ 311 (726)
.+ ........+.+.+++..+.... .++++||||+++..++.+.+.|.. .++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~--~~~kvlIF~~~~~t~~~L~~~L~~--~~~~~~~~~g~ 398 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKN--PDSRIIVFTQYRDTAEKIVDLLEK--EGIKAVRFVGQ 398 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHh--CCCceEEEEcc
Confidence 00 0000011222334444433222 347999999999999999999964 34667777775
Q ss_pred --------CCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHH
Q 004875 312 --------VDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 382 (726)
Q Consensus 312 --------l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR 382 (726)
+++.+|..+++.|+++. +|+|||+++++|+|+|++++||+ ||++.+...+ .||
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~~s~~r~----------iQR 460 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPVPSEIRS----------IQR 460 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCCCCHHHH----------HHH
Confidence 89999999999999988 99999999999999999999999 9998755555 999
Q ss_pred cCCCCCCCCceEEEeechh
Q 004875 383 RGRTGRTCDGQVYRLVTKS 401 (726)
Q Consensus 383 ~GRaGR~~~G~~~~L~s~~ 401 (726)
+||+||.++|.+|.|+++.
T Consensus 461 ~GR~gR~~~~~v~~l~~~~ 479 (773)
T PRK13766 461 KGRTGRQEEGRVVVLIAKG 479 (773)
T ss_pred hcccCcCCCCEEEEEEeCC
Confidence 9999999999999999864
No 69
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.94 E-value=4.1e-26 Score=244.76 Aligned_cols=314 Identities=17% Similarity=0.227 Sum_probs=220.2
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CC-CcEEEecchHHHHHHHHHHHHhh----cCCccC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NM-EPILCTQPRRFAVVAVAKMVAKG----RNCELG 97 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~-~~Iivt~Prrlaa~~~a~~va~~----~~~~lg 97 (726)
.+++|..+|+++..+=++||.+..|+|||..+..+.++. .. ..+|++|+|+++ .++-..+... .|..+.
T Consensus 48 ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREia-VQI~~tv~~v~~sf~g~~cs 126 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIA-VQIKETVRKVAPSFTGARCS 126 (980)
T ss_pred CCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhh-hHHHHHHHHhcccccCcceE
Confidence 368999999999999999999999999994443333332 22 256666666655 4444433322 222222
Q ss_pred Ceeeee-eccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccccc-HHHHHHHHHHhcCCCceEEEe
Q 004875 98 GEVGYH-IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 98 ~~Vgy~-v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d-~ll~~lk~l~~~~~~lklIlm 175 (726)
.-+|.. +..+...-..++|+|+|||+++.+...+.++..+++++|+|||+ ..+++. |...+-+.+-..+...|++.+
T Consensus 127 vfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~ 205 (980)
T KOG4284|consen 127 VFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAF 205 (980)
T ss_pred EEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEE
Confidence 222211 12233334678999999999999998888888899999999999 566654 444444444455666799999
Q ss_pred ccCCC---HHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccc
Q 004875 176 SATAD---ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (726)
Q Consensus 176 SATl~---~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (726)
|||.+ .+.++.|.++ ...+..... ...++..+.+|.. ...+ .
T Consensus 206 SATYp~nLdn~Lsk~mrd------p~lVr~n~~-d~~L~GikQyv~~-----------------------~~s~-----n 250 (980)
T KOG4284|consen 206 SATYPRNLDNLLSKFMRD------PALVRFNAD-DVQLFGIKQYVVA-----------------------KCSP-----N 250 (980)
T ss_pred eccCchhHHHHHHHHhcc------cceeecccC-Cceeechhheeee-----------------------ccCC-----c
Confidence 99975 3456666654 112222111 1123333322211 0111 1
Q ss_pred cChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEE
Q 004875 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVI 331 (726)
Q Consensus 253 ~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVl 331 (726)
..-+...+....+.++....+- .+.||||+....++.++..|. ..|+.+..+.|.|++.+|..++..++.-+ +||
T Consensus 251 nsveemrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~--ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rIL 326 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLK--SSGLDVTFISGAMSQKDRLLAVDQLRAFRVRIL 326 (980)
T ss_pred chHHHHHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhh--ccCCCeEEeccccchhHHHHHHHHhhhceEEEE
Confidence 1122334444556666655543 478999999999999999999 56699999999999999999999999999 999
Q ss_pred EEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeech
Q 004875 332 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (726)
Q Consensus 332 vaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~ 400 (726)
|+||.-++|||-|.|+.||| .|++.+.++| .||+|||||. .-|.++.++..
T Consensus 327 VsTDLtaRGIDa~~vNLVVN--------iD~p~d~eTY----------~HRIGRAgRFG~~G~aVT~~~~ 378 (980)
T KOG4284|consen 327 VSTDLTARGIDADNVNLVVN--------IDAPADEETY----------FHRIGRAGRFGAHGAAVTLLED 378 (980)
T ss_pred EecchhhccCCccccceEEe--------cCCCcchHHH----------HHHhhhcccccccceeEEEecc
Confidence 99999999999999999999 9999988888 9999999999 56998888754
No 70
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.7e-26 Score=237.18 Aligned_cols=304 Identities=19% Similarity=0.212 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC------------CCcEEEecchHHHHHHHHHHHHhhc---C
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGR---N 93 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~------------~~~Iivt~Prrlaa~~~a~~va~~~---~ 93 (726)
+-+|..+|+.+++|++++..|.||||||.++...+++.. ...++++ |++.+|+|+.+.+.+.. .
T Consensus 43 TlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLv-PTkEL~qQvy~viekL~~~c~ 121 (569)
T KOG0346|consen 43 TLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILV-PTKELAQQVYKVIEKLVEYCS 121 (569)
T ss_pred chhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEe-chHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999966655554321 1145555 55555666655544321 1
Q ss_pred -----CccCCeeeeeeccccccCCCCeEEEEChHHHHHHHHhcC-CCCCceeEEEEcccccccccccHHHHHHHHHHhcC
Q 004875 94 -----CELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (726)
Q Consensus 94 -----~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~ 167 (726)
..+.....-.+ ......+.++|+|+||+.+++.+..+. ..+..++++|+|||| -.+.-.+-..+-+.....+
T Consensus 122 k~lr~~nl~s~~sdsv-~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeedlk~l~~~LP 199 (569)
T KOG0346|consen 122 KDLRAINLASSMSDSV-NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEEDLKKLRSHLP 199 (569)
T ss_pred HhhhhhhhhcccchHH-HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHHHHHHHHhCC
Confidence 11111100000 012235678999999999999998876 334489999999999 3333334344444444556
Q ss_pred CCceEEEeccCC--CHHHHHHHHhhcCCCcceeEEEecCC-----CccceeeceehhHHHHHHHhccCCCCccccccccc
Q 004875 168 NDLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIPST-----NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRY 240 (726)
Q Consensus 168 ~~lklIlmSATl--~~~~~~~~f~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y 240 (726)
+..|-++||||+ |...+...|-. .|+. +..... .+-..|.+.
T Consensus 200 r~~Q~~LmSATl~dDv~~LKkL~l~----nPvi-Lkl~e~el~~~dqL~Qy~v~-------------------------- 248 (569)
T KOG0346|consen 200 RIYQCFLMSATLSDDVQALKKLFLH----NPVI-LKLTEGELPNPDQLTQYQVK-------------------------- 248 (569)
T ss_pred chhhheeehhhhhhHHHHHHHHhcc----CCeE-EEeccccCCCcccceEEEEE--------------------------
Confidence 778999999998 56667777643 1222 222111 011111111
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHH
Q 004875 241 CSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMA 320 (726)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~ 320 (726)
... .+. -++...+..+.. ..|++|||+|+.+.+.++.-.|...+ +....+.|.||..-|..+
T Consensus 249 --cse---------~DK-flllyallKL~L----I~gKsliFVNtIdr~YrLkLfLeqFG--iksciLNseLP~NSR~Hi 310 (569)
T KOG0346|consen 249 --CSE---------EDK-FLLLYALLKLRL----IRGKSLIFVNTIDRCYRLKLFLEQFG--IKSCILNSELPANSRCHI 310 (569)
T ss_pred --ecc---------chh-HHHHHHHHHHHH----hcCceEEEEechhhhHHHHHHHHHhC--cHhhhhcccccccchhhH
Confidence 000 000 111122222211 23799999999999999988888554 777889999999999999
Q ss_pred hhccCCCc-EEEEEccc-----------------------------------ccccccCCCeeEEEeCCCceeeeecCCC
Q 004875 321 MKICKSHR-KVILATNI-----------------------------------AESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (726)
Q Consensus 321 ~~~f~~~r-kVlvaTni-----------------------------------ae~GIdip~v~~VId~G~~k~~~yd~~~ 364 (726)
++.|..|- .||||||. ..+|||+..|..||| ||.|.
T Consensus 311 i~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD~P~ 382 (569)
T KOG0346|consen 311 IEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FDFPE 382 (569)
T ss_pred HHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee--------cCCCC
Confidence 99999888 99999992 148999999999999 99999
Q ss_pred CccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 365 KIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 365 ~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
...+| +||+||++|. .+|.+..++.+.+
T Consensus 383 t~~sY----------IHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 383 TVTSY----------IHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred chHHH----------HHhccccccCCCCCceEEEecchH
Confidence 88888 9999999999 7899999988653
No 71
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=261.18 Aligned_cols=313 Identities=19% Similarity=0.265 Sum_probs=217.5
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHH--HHHHHh-------cCCC--cEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLA-------ENME--PILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~i--p~~lle-------~~~~--~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
+.+++|.+++++|..+++||.+|.||||||..+ |.+... .+.+ .+|++ |.|-.++|+.+.+..... .
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~a-Ptrela~QI~r~~~kf~k-~ 464 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILA-PTRELAMQIHREVRKFLK-L 464 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEc-CCHHHHHHHHHHHHHHHh-h
Confidence 678999999999999999999999999999555 444221 1112 34444 555556777666654432 2
Q ss_pred cCCeeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCC---CCCceeEEEEcccccccccccHHHHHHHHHHhc
Q 004875 96 LGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDLVLVCVKQLLLK 166 (726)
Q Consensus 96 lg~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l---~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~ 166 (726)
+|..+--..+.. .....++.|+|||||+++..+..+.. ++.++..+|+|||| |+++..|.....+.+...
T Consensus 465 l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nl 543 (997)
T KOG0334|consen 465 LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNL 543 (997)
T ss_pred cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhc
Confidence 332222111111 22356699999999999998754322 33477799999999 898888887777777777
Q ss_pred CCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCC
Q 004875 167 KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (726)
Q Consensus 167 ~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 246 (726)
+|+.|.+++|||.+.. +...-...- ..|+.++ +-+.. .+.-+ ...
T Consensus 544 rpdrQtvlfSatfpr~-m~~la~~vl-~~Pveii-v~~~s---vV~k~-----------------------------V~q 588 (997)
T KOG0334|consen 544 RPDRQTVLFSATFPRS-MEALARKVL-KKPVEII-VGGRS---VVCKE-----------------------------VTQ 588 (997)
T ss_pred chhhhhhhhhhhhhHH-HHHHHHHhh-cCCeeEE-Eccce---eEecc-----------------------------ceE
Confidence 9999999999998655 222222111 1233322 11110 00000 000
Q ss_pred CccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC
Q 004875 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (726)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~ 326 (726)
...-..+..+ -+..+...+..... .+++||||...+.+..+.+.|. ..++.+..+||+.++.+|..+++.|++
T Consensus 589 ~v~V~~~e~e---Kf~kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~~~L~--~ag~~~~slHGgv~q~dR~sti~dfK~ 661 (997)
T KOG0334|consen 589 VVRVCAIENE---KFLKLLELLGERYE--DGKTIIFVDKQEKADALLRDLQ--KAGYNCDSLHGGVDQHDRSSTIEDFKN 661 (997)
T ss_pred EEEEecCchH---HHHHHHHHHHHHhh--cCCEEEEEcCchHHHHHHHHHH--hcCcchhhhcCCCchHHHHhHHHHHhc
Confidence 0000011111 12233333333333 3799999999999999999998 445888889999999999999999999
Q ss_pred Cc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 327 ~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
+. +++|||+++++|+|++++..||+ ||.+..+..| .||+||+||+ +.|.||.+.++++
T Consensus 662 ~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pnh~edy----------vhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 662 GVVNLLVATSVVARGLDVKELILVVN--------YDFPNHYEDY----------VHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred cCceEEEehhhhhcccccccceEEEE--------cccchhHHHH----------HHHhcccccCCccceeEEEeChHH
Confidence 99 99999999999999999999999 9999998887 9999999999 6799999999854
No 72
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.6e-25 Score=229.59 Aligned_cols=311 Identities=19% Similarity=0.269 Sum_probs=220.1
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC-----CcEEEecchHHHHHHHHHHHHhhcCCccC----C
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELG----G 98 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~-----~~Iivt~Prrlaa~~~a~~va~~~~~~lg----~ 98 (726)
.+++|+.++..+.+|.++++.+.+|+|||..+...++.... ..+++..|.|.+|++..+ +....|...+ .
T Consensus 49 PSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~-v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 49 PSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQK-VVRALGDHMDVSVHA 127 (397)
T ss_pred chHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHH-HHHhhhcccceeeee
Confidence 36789999999999999999999999999766666665422 245555566666666653 3333333222 2
Q ss_pred eeeeeec--ccccc-CCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 99 EVGYHIG--HSKHL-SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 99 ~Vgy~v~--~~~~~-~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
.+|.... .+... ....+|+++|||..+..+....+....+.++|+||++| ++..+|...+.......+++.|++++
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdqI~~if~~lp~~vQv~l~ 206 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQIYDIFQELPSDVQVVLL 206 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-hhccchHHHHHHHHHHcCcchhheee
Confidence 2332211 12222 34589999999999999887766656899999999996 55667777777777777889999999
Q ss_pred ccCCCHHH--HHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 004875 176 SATADITK--YRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (726)
Q Consensus 176 SATl~~~~--~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (726)
|||++.+. ..+-|.. +++.+..-.. ....-..+.+|. ....
T Consensus 207 SAT~p~~vl~vt~~f~~----~pv~i~vkk~--~ltl~gikq~~i-----------------------~v~k-------- 249 (397)
T KOG0327|consen 207 SATMPSDVLEVTKKFMR----EPVRILVKKD--ELTLEGIKQFYI-----------------------NVEK-------- 249 (397)
T ss_pred cccCcHHHHHHHHHhcc----CceEEEecch--hhhhhheeeeee-----------------------eccc--------
Confidence 99987554 3344432 2222221111 000000011110 0000
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEE
Q 004875 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (726)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlv 332 (726)
.+.. ..+..++.. -...+|||||++.+..+...|. ..++.+..+|+.+.+.+|..+++.|++|. +|+|
T Consensus 250 -~~k~----~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~--~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 250 -EEKL----DTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLR--AHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred -cccc----cHHHHHHHh----hhcceEEecchhhHHHHHHHHh--hCCceEEEeecccchhhhhHHHHHhhcCCceEEe
Confidence 0011 233333332 2477999999999999999996 45689999999999999999999999998 9999
Q ss_pred EcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHhhc
Q 004875 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (726)
Q Consensus 333 aTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~~l 406 (726)
+|+.+++|+|+-.+..||+ ||.|.+.++| .||+||+||. ++|.++.++++++...+
T Consensus 319 ttdl~argidv~~~slvin--------ydlP~~~~~y----------ihR~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 319 TTDLLARGIDVQQVSLVVN--------YDLPARKENY----------IHRIGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred eccccccccchhhcceeee--------eccccchhhh----------hhhcccccccCCCceeeeeehHhhHHHH
Confidence 9999999999999999999 9999887777 9999999999 89999999998776544
No 73
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=8.5e-25 Score=238.18 Aligned_cols=347 Identities=16% Similarity=0.213 Sum_probs=234.5
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHh----HHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKS----SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKT----t~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
+-+.++|..++..+.+++.|+|+|-|.+||| +++.+.+.+ ..++|+|.|-..+..|-++.+-.|++ .||
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~-----DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFK-----DVG 200 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhc-----ccc
Confidence 5568999999999999999999999999999 444444443 35899999988887787877777775 255
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC-C
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-D 180 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl-~ 180 (726)
.. .++-..++++..+|||+++|..++..+.--...+.+||+||+| .+-+.+-..-+-..++..+++.|.+++|||+ |
T Consensus 201 LM-TGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGVVWEETIIllP~~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 201 LM-TGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGVVWEETIILLPDNVRFVFLSATIPN 278 (1041)
T ss_pred ee-ecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hccccccceeeeeeEEeccccceEEEEeccCCC
Confidence 44 3445568899999999999999887765445699999999999 4444333333333444557789999999996 8
Q ss_pred HHHHHHHHhhcCCCcceeEEEecCCCcc---ceeece--eh---------hHHH-HHHHhc-cCCCCccc---ccccccc
Q 004875 181 ITKYRDYFRDLGRGERVEVLAIPSTNQR---TIFQRR--VS---------YLEQ-VTELLG-VDHGMTSE---LSSLRYC 241 (726)
Q Consensus 181 ~~~~~~~f~~~~~~~~~~v~~~~~~~~~---~~~~~~--~~---------yl~~-~~~~~~-~~~~~~~~---~~~~~y~ 241 (726)
+..|++|...+.. .||.|++..-++.. ..||.- -. |-++ ..+.+. ........ ....+..
T Consensus 279 A~qFAeWI~~ihk-QPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~ 357 (1041)
T KOG0948|consen 279 ARQFAEWICHIHK-QPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGR 357 (1041)
T ss_pred HHHHHHHHHHHhc-CCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccc
Confidence 9999999987543 35666665544321 223310 00 1111 000000 00000000 0000000
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCC---------------------
Q 004875 242 SGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS--------------------- 300 (726)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~--------------------- 300 (726)
.+.. .....-... +..++..|..+. ..++|||.-++++|+..+-.+.++.
T Consensus 358 kG~~--~~~~~~~s~----i~kiVkmi~~~~---~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 358 KGGT--GGKGPGDSD----IYKIVKMIMERN---YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred cCCc--CCCCCCccc----HHHHHHHHHhhc---CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 0000 000011112 234444444443 3599999999999998887765321
Q ss_pred ----CC------------cEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCC
Q 004875 301 ----SF------------FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVN 363 (726)
Q Consensus 301 ----~~------------~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~ 363 (726)
.+ =.+..+||||-+--+..++=.|..|- |+++||.+.+.|+|+|.-++|. -..
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----------T~~ 498 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----------TAV 498 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----------eec
Confidence 00 14677899998877777777899998 9999999999999999888775 344
Q ss_pred CCccccceEeecHHhHHHHcCCCCCC---CCceEEEeechh
Q 004875 364 RKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKS 401 (726)
Q Consensus 364 ~~~~~l~~~~iS~a~~~QR~GRaGR~---~~G~~~~L~s~~ 401 (726)
+.++.-...|||-.+|.||.|||||. ..|.|+.++++.
T Consensus 499 rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 499 RKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 55666678999999999999999999 579999999864
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=7.1e-25 Score=250.09 Aligned_cols=325 Identities=18% Similarity=0.199 Sum_probs=195.6
Q ss_pred CCCCCcHHHHHHHHHHHHcC---CcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 23 FSSLPVMSLREKIVEKVLEN---RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~---~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
+....+++||.+++..+..+ +..+|++|||+|||.+....+... .++++|+.|+..++.|..+.+.+......+ .
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-~k~tLILvps~~Lv~QW~~ef~~~~~l~~~-~ 328 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS-Q 328 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc-e
Confidence 34466899999999998743 378999999999997665554443 356788888888888888877765443222 2
Q ss_pred eeeeecccc-ccCCCCeEEEEChHHHHHHHHh--------cCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 004875 100 VGYHIGHSK-HLSERSKIVFKTAGVLLDEMRD--------RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (726)
Q Consensus 100 Vgy~v~~~~-~~~~~~~Iiv~T~g~Ll~~l~~--------~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~l 170 (726)
++...+..+ .......|+|+|.+++...... +.+....+++||+|||| +... ...+.++..-...
T Consensus 329 I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~lpA-----~~fr~il~~l~a~ 402 (732)
T TIGR00603 329 ICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-VVPA-----AMFRRVLTIVQAH 402 (732)
T ss_pred EEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-cccH-----HHHHHHHHhcCcC
Confidence 332222211 1223478999999988532111 11222378999999999 4432 2233333322334
Q ss_pred eEEEeccCCC--HHHHHHHHhhcCCCcceeEEEecCC---Cccce-----eeceehhHHHHHHHhccCCCCccccccccc
Q 004875 171 RVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPST---NQRTI-----FQRRVSYLEQVTELLGVDHGMTSELSSLRY 240 (726)
Q Consensus 171 klIlmSATl~--~~~~~~~f~~~~~~~~~~v~~~~~~---~~~~~-----~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y 240 (726)
..+++|||+. .+....++..+|. .+...+.. ..+.. .++.+..-++... .|
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~LiGP----~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~---------------~y 463 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLIGP----KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYR---------------EY 463 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhcCC----eeeecCHHHHHhCCccccceEEEEEecCCHHHHH---------------HH
Confidence 6799999972 2223333222221 11111110 00000 0000000000000 00
Q ss_pred cCCCC-CCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHH
Q 004875 241 CSGPS-PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALM 319 (726)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~ 319 (726)
..... .........+.....+..++.. +. ..+.++|||+.....++.+++.|. +..+||+++..+|.+
T Consensus 464 l~~~~~~k~~l~~~np~K~~~~~~Li~~-he---~~g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 464 LRENSRKRMLLYVMNPNKFRACQFLIRF-HE---QRGDKIIVFSDNVFALKEYAIKLG-------KPFIYGPTSQQERMQ 532 (732)
T ss_pred HHhcchhhhHHhhhChHHHHHHHHHHHH-Hh---hcCCeEEEEeCCHHHHHHHHHHcC-------CceEECCCCHHHHHH
Confidence 00000 0000001122223333334322 22 124699999999999999988874 345899999999999
Q ss_pred HhhccCCC-c-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCc-eE--
Q 004875 320 AMKICKSH-R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDG-QV-- 394 (726)
Q Consensus 320 ~~~~f~~~-r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G-~~-- 394 (726)
+++.|+.+ . ++||+|+++.+|||+|++++||. ++++.+ |+.++.||.||++|..+| .+
T Consensus 533 il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~~g---------S~~q~iQRlGRilR~~~~~~~~~ 595 (732)
T TIGR00603 533 ILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSHYG---------SRRQEAQRLGRILRAKKGSDAEE 595 (732)
T ss_pred HHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCCCC---------CHHHHHHHhcccccCCCCCcccc
Confidence 99999854 6 99999999999999999999998 776632 677889999999999653 44
Q ss_pred -----EEeechhh
Q 004875 395 -----YRLVTKSF 402 (726)
Q Consensus 395 -----~~L~s~~~ 402 (726)
|.|++++.
T Consensus 596 ~~A~fY~lVs~dT 608 (732)
T TIGR00603 596 YNAFFYSLVSKDT 608 (732)
T ss_pred ccceEEEEecCCc
Confidence 88888643
No 75
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.8e-25 Score=238.79 Aligned_cols=314 Identities=18% Similarity=0.213 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC----------CcEEEecchHHHHHHHHHHHHhhc-CCccC
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM----------EPILCTQPRRFAVVAVAKMVAKGR-NCELG 97 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~----------~~Iivt~Prrlaa~~~a~~va~~~-~~~lg 97 (726)
.+.|.++++.+.++++++.|+|||||||..+...++.... -..+++.|.|.++.++.....+.. +..-+
T Consensus 160 t~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~ 239 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS 239 (593)
T ss_pred CcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc
Confidence 5678899999999999999999999999665544443211 134555566666666655444322 01101
Q ss_pred -Ceee--eee----ccccccCCCCeEEEEChHHHHHHHHhcC--CCCCceeEEEEcccccccccc-cHHHHHHHHHHh-c
Q 004875 98 -GEVG--YHI----GHSKHLSERSKIVFKTAGVLLDEMRDRG--LNALKYKVIILDEVHERSVES-DLVLVCVKQLLL-K 166 (726)
Q Consensus 98 -~~Vg--y~v----~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~--l~l~~~~~VIIDEaHeR~~~~-d~ll~~lk~l~~-~ 166 (726)
...+ |.. ..........+|++.||-.+...+..++ +.+.++.++|+||++ +..+. .|...+-..+.. .
T Consensus 240 ~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~ 318 (593)
T KOG0344|consen 240 LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQ 318 (593)
T ss_pred hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhc
Confidence 0111 110 0111123467999999999999887765 456699999999999 66665 344333332222 2
Q ss_pred CCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCC
Q 004875 167 KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (726)
Q Consensus 167 ~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 246 (726)
.+++++-++|||++.. ..+|...... ..+.++ +..++ .-.+.+.+. ..|+...
T Consensus 319 s~~i~~a~FSat~~~~-VEE~~~~i~~-~~~~vi-vg~~~---------sa~~~V~Qe-------------lvF~gse-- 371 (593)
T KOG0344|consen 319 SPDIRVALFSATISVY-VEEWAELIKS-DLKRVI-VGLRN---------SANETVDQE-------------LVFCGSE-- 371 (593)
T ss_pred CcchhhhhhhccccHH-HHHHHHHhhc-cceeEE-Eecch---------hHhhhhhhh-------------heeeecc--
Confidence 3789999999998532 4444433110 111111 10000 000000000 0011000
Q ss_pred CccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC
Q 004875 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (726)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~ 326 (726)
.. .+..+..-+.... ..++|||+.+.+.+.++.+.|. ...++.+..+||..++.+|...++.|+.
T Consensus 372 --------~~---K~lA~rq~v~~g~---~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 372 --------KG---KLLALRQLVASGF---KPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred --------hh---HHHHHHHHHhccC---CCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhc
Confidence 00 0111112222222 3599999999999999999994 2566889999999999999999999999
Q ss_pred Cc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 327 ~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
|. .|++||+++++|+|+-||+.||+ ||.+....+ |.||+||+||. +.|++|.+|++++.
T Consensus 437 g~IwvLicTdll~RGiDf~gvn~VIn--------yD~p~s~~s----------yihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 437 GKIWVLICTDLLARGIDFKGVNLVIN--------YDFPQSDLS----------YIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred cCeeEEEehhhhhccccccCcceEEe--------cCCCchhHH----------HHHHhhccCCCCCCcceEEEeccccc
Confidence 99 99999999999999999999999 999985554 49999999999 77999999998544
No 76
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=6.4e-24 Score=236.72 Aligned_cols=348 Identities=17% Similarity=0.210 Sum_probs=229.3
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHH--HHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~--ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
+-+..+|++++..+..|..|+|.|+|.+|||.. +...+......+.++|.|-..+..|-.+.+.+.+| .|| .
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~-----Dvg-L 369 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFG-----DVG-L 369 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcc-----ccc-e
Confidence 456789999999999999999999999999943 34445566677899999977766666666665444 255 3
Q ss_pred eccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC-CHH
Q 004875 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DIT 182 (726)
Q Consensus 104 v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl-~~~ 182 (726)
+.++-+..+.+.+++||+++|..++.++.-.+.++.+||+||+| ..-+.+-.--+-..++..++.+++|++|||. |..
T Consensus 370 lTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH-YiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 370 LTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YINDVERGVVWEEVIIMLPRHVNFILLSATVPNTL 448 (1248)
T ss_pred eecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee-ecccccccccceeeeeeccccceEEEEeccCCChH
Confidence 46777888999999999999999988765456699999999999 2222222222233455667889999999995 899
Q ss_pred HHHHHHhhcCCCcceeEEEecCCCccceeeceeh----------------hHHH----HHHHhc-----cC----CCC--
Q 004875 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVS----------------YLEQ----VTELLG-----VD----HGM-- 231 (726)
Q Consensus 183 ~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------------yl~~----~~~~~~-----~~----~~~-- 231 (726)
.|++|.+.... ...-|+..+.+ ..|.+.+ ++.. ..+..+ .+ .+.
T Consensus 449 EFA~WIGRtK~-K~IyViST~kR----PVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~ 523 (1248)
T KOG0947|consen 449 EFADWIGRTKQ-KTIYVISTSKR----PVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGG 523 (1248)
T ss_pred HHHHHhhhccC-ceEEEEecCCC----ccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccc
Confidence 99999987532 22223222221 1221111 1110 001110 00 000
Q ss_pred cc---ccccccccCCCCCCccccccChhH--HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCC------
Q 004875 232 TS---ELSSLRYCSGPSPSMANAEIKPEV--HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------ 300 (726)
Q Consensus 232 ~~---~~~~~~y~~~~~~~~~~~~~~~~~--~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~------ 300 (726)
+. .-....|..+.. .. ..+.... ...+.+++.++....- =+++|||-+++.|++.++.|....
T Consensus 524 rgs~~~ggk~~~~~g~~-r~--~~~~~nrr~~~~~l~lin~L~k~~l---LP~VvFvFSkkrCde~a~~L~~~nL~~~~E 597 (1248)
T KOG0947|consen 524 RGSQKRGGKTNYHNGGS-RG--SGIGKNRRKQPTWLDLINHLRKKNL---LPVVVFVFSKKRCDEYADYLTNLNLTDSKE 597 (1248)
T ss_pred ccccccCCcCCCCCCCc-cc--ccccccccccchHHHHHHHHhhccc---CceEEEEEccccHHHHHHHHhccCcccchh
Confidence 00 000011111100 00 0000000 1235567777766543 489999999999999998885210
Q ss_pred -------------------CC------------cEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeE
Q 004875 301 -------------------SF------------FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAY 348 (726)
Q Consensus 301 -------------------~~------------~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~ 348 (726)
.. -.+..+|||+-+--+.-++-.|..|- ||++||.++++|||+|.-.+
T Consensus 598 KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtv 677 (1248)
T KOG0947|consen 598 KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTV 677 (1248)
T ss_pred HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeE
Confidence 00 14778999998888888888898887 99999999999999999888
Q ss_pred EEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC---CCceEEEeechh
Q 004875 349 VIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKS 401 (726)
Q Consensus 349 VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~---~~G~~~~L~s~~ 401 (726)
|+++ -.+.+.-....+...+|.||+|||||. ..|.++.+....
T Consensus 678 VF~S----------l~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 678 VFSS----------LRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred Eeee----------hhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 8763 222233344556788999999999999 469888887643
No 77
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3e-25 Score=228.60 Aligned_cols=308 Identities=21% Similarity=0.249 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC-------CCcEEEecchHHHHHHHHHHHHhhcCCccC----
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-------MEPILCTQPRRFAVVAVAKMVAKGRNCELG---- 97 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~-------~~~Iivt~Prrlaa~~~a~~va~~~~~~lg---- 97 (726)
+|+|.+.++.++++++++-.+-||||||..+...+++.. .+.+++.+.|++++ +.-+.+++ +|...+
T Consensus 45 tpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~-qtlkvvkd-lgrgt~lr~s 122 (529)
T KOG0337|consen 45 TPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELAL-QTLKVVKD-LGRGTKLRQS 122 (529)
T ss_pred CchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHH-HHHHHHHH-hccccchhhh
Confidence 678889999999999999999999999966555554432 23566666666654 44444332 222111
Q ss_pred Ceeeeeecccc---ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 98 GEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 98 ~~Vgy~v~~~~---~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
-.+|+. ..++ ....+.+|+++|||+++.....-.+.+..+.+||+||++ |.....|...+-+.+-+...+.+.++
T Consensus 123 ~~~ggD-~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTll 200 (529)
T KOG0337|consen 123 LLVGGD-SIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTLL 200 (529)
T ss_pred hhcccc-hHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEEE
Confidence 123433 1222 346689999999999988766655677899999999999 88888888887777777777889999
Q ss_pred eccCCCHHHHHHHHhhcCCCcceeEE-EecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 004875 175 MSATADITKYRDYFRDLGRGERVEVL-AIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (726)
Q Consensus 175 mSATl~~~~~~~~f~~~~~~~~~~v~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (726)
||||++..... +- ..|...|+-|. .+..+. ++.+...++.....
T Consensus 201 fSatlp~~lv~-fa-kaGl~~p~lVRldvetki--------------------------se~lk~~f~~~~~a------- 245 (529)
T KOG0337|consen 201 FSATLPRDLVD-FA-KAGLVPPVLVRLDVETKI--------------------------SELLKVRFFRVRKA------- 245 (529)
T ss_pred EeccCchhhHH-HH-HccCCCCceEEeehhhhc--------------------------chhhhhheeeeccH-------
Confidence 99999855332 22 22333333322 111100 00001111111000
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEE
Q 004875 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (726)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlv 332 (726)
+. ...+.++...... ..+.+||+++..+++.+...|+.. ++.+..++|.|+++.|......|+.++ .++|
T Consensus 246 --~K----~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~--g~~~s~iysslD~~aRk~~~~~F~~~k~~~lv 316 (529)
T KOG0337|consen 246 --EK----EAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDF--GGEGSDIYSSLDQEARKINGRDFRGRKTSILV 316 (529)
T ss_pred --HH----HHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhc--CCCccccccccChHhhhhccccccCCccceEE
Confidence 00 1223333322211 257999999999999999999844 477888999999999999999999999 9999
Q ss_pred EcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 333 aTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
.|++|++|+|||...-||+ ||.+..-..+ +||.||+.|. +.|..|.++..++
T Consensus 317 vTdvaaRG~diplldnvin--------yd~p~~~klF----------vhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 317 VTDVAARGLDIPLLDNVIN--------YDFPPDDKLF----------VHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred EehhhhccCCCcccccccc--------ccCCCCCceE----------EEEecchhhccccceEEEEEeccc
Confidence 9999999999999999999 9999888877 9999999998 5899999988653
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=2e-24 Score=222.27 Aligned_cols=318 Identities=16% Similarity=0.162 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHH-cCCcEEEEcCCCChHh--HHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccC---Ceeee
Q 004875 29 MSLREKIVEKVL-ENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG---GEVGY 102 (726)
Q Consensus 29 ~~~Q~~il~~i~-~~~~vii~a~TGSGKT--t~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg---~~Vgy 102 (726)
++.|++++..+. .+++|.|++|||+||| +|+|..+.+. ..||+.|--.+.......+.. +..++. ....-
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~g---ITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt 97 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGG---ITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLST 97 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCC---eEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhH
Confidence 357888888764 6689999999999999 6777766543 344555533222222222211 111111 00000
Q ss_pred eec-----cccccCCCCeEEEEChHHHHHHHHhcC----CCCCceeEEEEccccccc-ccccHHHHHHH--HHHhcCCCc
Q 004875 103 HIG-----HSKHLSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHERS-VESDLVLVCVK--QLLLKKNDL 170 (726)
Q Consensus 103 ~v~-----~~~~~~~~~~Iiv~T~g~Ll~~l~~~~----l~l~~~~~VIIDEaHeR~-~~~d~ll~~lk--~l~~~~~~l 170 (726)
..| .-....+.++++|.||++.......+- .+-..++++++||||.-+ +.-||...+|+ .+..+.++.
T Consensus 98 ~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~v 177 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGV 177 (641)
T ss_pred HHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCC
Confidence 001 112335678999999987643322111 111257899999999755 33466655543 345567889
Q ss_pred eEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 004875 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (726)
Q Consensus 171 klIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 250 (726)
.-+.++||.+++.-.+.|..+.-..||.++..|....+..|.+. |-+-+.+-+
T Consensus 178 pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~--~K~~I~D~~------------------------- 230 (641)
T KOG0352|consen 178 PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH--MKSFITDCL------------------------- 230 (641)
T ss_pred ceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH--HHHHhhhHh-------------------------
Confidence 99999999999888888877666666766666654322222211 111111100
Q ss_pred cccChhHHHHHHHHHHHH-------HhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhc
Q 004875 251 AEIKPEVHKLIHDLVLHI-------HKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (726)
Q Consensus 251 ~~~~~~~~~li~~lv~~i-------~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~ 323 (726)
..+.+...+- ..+.....|.-||||.|++++|+++-.|. ..++....+|++|...||..+.+.
T Consensus 231 --------~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~--~~Gi~A~AYHAGLK~~ERTeVQe~ 300 (641)
T KOG0352|consen 231 --------TVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE--IAGIPAMAYHAGLKKKERTEVQEK 300 (641)
T ss_pred --------HhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh--hcCcchHHHhcccccchhHHHHHH
Confidence 0111111111 11112224678999999999999999998 456889999999999999999999
Q ss_pred cCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 324 f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
+-++. .||+||+..++|||-|+|++||+ ||++.++..| .|-.|||||. .+..|-.-|+++
T Consensus 301 WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn~AgY----------YQESGRAGRDGk~SyCRLYYsR~ 362 (641)
T KOG0352|consen 301 WMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQNLAGY----------YQESGRAGRDGKRSYCRLYYSRQ 362 (641)
T ss_pred HhcCCCCEEEEEeccccccCCcceeEEEe--------cCchhhhHHH----------HHhccccccCCCccceeeeeccc
Confidence 88777 99999999999999999999999 9999877666 9999999999 567887778877
Q ss_pred hHhh
Q 004875 402 FFGT 405 (726)
Q Consensus 402 ~~~~ 405 (726)
+.+.
T Consensus 363 D~~~ 366 (641)
T KOG0352|consen 363 DKNA 366 (641)
T ss_pred chHH
Confidence 6654
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.91 E-value=1.2e-23 Score=254.63 Aligned_cols=273 Identities=19% Similarity=0.205 Sum_probs=169.0
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH--HhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l--le~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
..++++|.++++.+..+++++++||||||||+.+...+ +.....+++++.|++.++.|+++++... +...+..+...
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l-~~~~~~~~~~~ 157 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF-GEKVGCGVKIL 157 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH-hhhcCceEEEE
Confidence 36789999999999999999999999999995322221 2222346777777788888888877653 22333222222
Q ss_pred ecccc-----------c-cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccc-----------ccHH----
Q 004875 104 IGHSK-----------H-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLV---- 156 (726)
Q Consensus 104 v~~~~-----------~-~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-----------~d~l---- 156 (726)
.+... . .....+|+|+|||.|.+.+. .+...++++||||||| +.++ .+|.
T Consensus 158 ~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 158 YYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHHHH
Confidence 11110 1 12468999999999998775 2344479999999999 4443 1221
Q ss_pred HHHHHHHHh---------------------cCCCceEEEeccCCCHHHHH-HHHhhcCCCcceeEEEecCCCccceeece
Q 004875 157 LVCVKQLLL---------------------KKNDLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRR 214 (726)
Q Consensus 157 l~~lk~l~~---------------------~~~~lklIlmSATl~~~~~~-~~f~~~~~~~~~~v~~~~~~~~~~~~~~~ 214 (726)
..+++.+.. ...+.+++++|||+++.... .+|... .. +.+.. .....-.+.
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~l-----l~-~~v~~-~~~~~rnI~ 307 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFREL-----LG-FEVGS-PVFYLRNIV 307 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhcc-----ce-EEecC-cccccCCce
Confidence 111111100 01156899999999754222 334321 00 11111 000000000
Q ss_pred ehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHH---HHH
Q 004875 215 VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA---LEQ 291 (726)
Q Consensus 215 ~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~---i~~ 291 (726)
..| .. .. ...+.+.+++ .... +.+||||++... ++.
T Consensus 308 ~~y-----------------------i~--------~~---~k~~~L~~ll----~~l~---~~~LIFv~t~~~~~~ae~ 346 (1176)
T PRK09401 308 DSY-----------------------IV--------DE---DSVEKLVELV----KRLG---DGGLIFVPSDKGKEYAEE 346 (1176)
T ss_pred EEE-----------------------EE--------cc---cHHHHHHHHH----HhcC---CCEEEEEecccChHHHHH
Confidence 001 00 00 1111222222 2222 478999999776 999
Q ss_pred HHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEE----cccccccccCCC-eeEEEeCCCcee
Q 004875 292 QWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQ 357 (726)
Q Consensus 292 l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlva----Tniae~GIdip~-v~~VId~G~~k~ 357 (726)
+++.|+. .++.+..+||++ + +.++.|++|+ +|||| ||++++|||+|+ |+|||+.|.++.
T Consensus 347 l~~~L~~--~gi~v~~~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~ 411 (1176)
T PRK09401 347 LAEYLED--LGINAELAISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKF 411 (1176)
T ss_pred HHHHHHH--CCCcEEEEeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCE
Confidence 9999985 458999999999 2 2359999999 99999 799999999999 899999555543
No 80
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=4e-23 Score=239.68 Aligned_cols=349 Identities=15% Similarity=0.181 Sum_probs=233.2
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHH--HHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~i--p~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
.+.+.++|++++..|..+..|+++||||||||... ...+.-....++++|.|-..+..|....+..++|.- ...||.
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL 195 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGL 195 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhccc
Confidence 46788999999999999999999999999999332 222222233469999998888888888888777643 334565
Q ss_pred eeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC-CH
Q 004875 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DI 181 (726)
Q Consensus 103 ~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl-~~ 181 (726)
. ..+-..++++.+++||+++|.+++..+...+.++.+||+||+| ..-+.+-...+-..++.....+++|+||||+ |+
T Consensus 196 ~-TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH-yi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~ 273 (1041)
T COG4581 196 M-TGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH-YIGDRERGVVWEEVIILLPDHVRFVFLSATVPNA 273 (1041)
T ss_pred e-ecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee-eccccccchhHHHHHHhcCCCCcEEEEeCCCCCH
Confidence 5 4455668899999999999999988876667799999999999 4444444444445556667789999999996 89
Q ss_pred HHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhcc-CCCCc---------cccccccccCCCC--C---
Q 004875 182 TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGV-DHGMT---------SELSSLRYCSGPS--P--- 246 (726)
Q Consensus 182 ~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~-~~~~~---------~~~~~~~y~~~~~--~--- 246 (726)
..|+.|+.... ..++.++....++ .|.+.+|... ..++.. +.... .......+..... +
T Consensus 274 ~EF~~Wi~~~~-~~~~~vv~t~~Rp----vPL~~~~~~~-~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 347 (1041)
T COG4581 274 EEFAEWIQRVH-SQPIHVVSTEHRP----VPLEHFVYVG-KGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDV 347 (1041)
T ss_pred HHHHHHHHhcc-CCCeEEEeecCCC----CCeEEEEecC-CceeeeecccccchhhcchhhhhhhhccchhccccCcccc
Confidence 99999998643 4455565555433 2222222111 000000 00000 0000000000000 0
Q ss_pred -Cc--------cccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC------------------
Q 004875 247 -SM--------ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL------------------ 299 (726)
Q Consensus 247 -~~--------~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~------------------ 299 (726)
.+ ....... ...+++.++.... .-++++|+-++..|+..+..+...
T Consensus 348 ~~~a~~~~~~~~~~~~~~----~~~~iv~~l~~~~---~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~ 420 (1041)
T COG4581 348 GRYARRTKALRGSAKGPA----GRPEIVNKLDKDN---LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDH 420 (1041)
T ss_pred ccccccccccCCcccccc----cchHHHhhhhhhc---CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHH
Confidence 00 0000000 0123444444333 358999999999999877766411
Q ss_pred --------CCCc-------------EEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCcee
Q 004875 300 --------SSFF-------------KVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQ 357 (726)
Q Consensus 300 --------~~~~-------------~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~ 357 (726)
..++ .+..+|++|=+..+..+...|..|- ||++||.+.+.|+|+|.-++|+ +++.|
T Consensus 421 ~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K- 498 (1041)
T COG4581 421 AIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK- 498 (1041)
T ss_pred HHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE-
Confidence 0001 2446899999999999999999888 9999999999999999877776 33333
Q ss_pred eeecCCCCccccceEeecHHhHHHHcCCCCCC---CCceEEEeec
Q 004875 358 VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVT 399 (726)
Q Consensus 358 ~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~---~~G~~~~L~s 399 (726)
|| .-...|+|..+|.|+.|||||. ..|.++...+
T Consensus 499 --~d------G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 499 --FD------GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred --ec------CCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 44 3457899999999999999999 4699888844
No 81
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=1.9e-22 Score=229.88 Aligned_cols=414 Identities=18% Similarity=0.216 Sum_probs=247.6
Q ss_pred cHHHHHHHHHHHHc-CCcEEEEcCCCChHhHHHHHHHHhc-C--C----------CcEEEecchHHHHHHHHHHHHhhcC
Q 004875 28 VMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQFLLAE-N--M----------EPILCTQPRRFAVVAVAKMVAKGRN 93 (726)
Q Consensus 28 i~~~Q~~il~~i~~-~~~vii~a~TGSGKTt~ip~~lle~-~--~----------~~Iivt~Prrlaa~~~a~~va~~~~ 93 (726)
+..+|..+..+... ..++++|||||+|||-....-+++. + . -+|++..|-..+++.+...+++.+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 56788888887764 4799999999999995444444432 1 1 1799999988888877776655432
Q ss_pred CccCCeeeeeecccc---ccCCCCeEEEEChHHHHHHHHhcC--CCCCceeEEEEcccccccccc-cHHHHHH----HHH
Q 004875 94 CELGGEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRG--LNALKYKVIILDEVHERSVES-DLVLVCV----KQL 163 (726)
Q Consensus 94 ~~lg~~Vgy~v~~~~---~~~~~~~Iiv~T~g~Ll~~l~~~~--l~l~~~~~VIIDEaHeR~~~~-d~ll~~l----k~l 163 (726)
.+|..|+=..+... ..-..|+|+++||+..--.-..+. -..+-|+++||||+|--.-+- -.+..+. ++.
T Consensus 390 -~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 390 -PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred -ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 45555554433322 224679999999986532222211 112368999999999211111 2233333 222
Q ss_pred HhcCCCceEEEeccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccC
Q 004875 164 LLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (726)
Q Consensus 164 ~~~~~~lklIlmSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~ 242 (726)
.......+++++|||+ |-+..+.|+.... + ..|- ++...+.-++...|..
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~----------~-----glf~--------------fd~syRpvPL~qq~Ig 519 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDP----------E-----GLFY--------------FDSSYRPVPLKQQYIG 519 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCc----------c-----cccc--------------cCcccCcCCccceEec
Confidence 2334578999999997 5556666554210 0 0000 0011111112222221
Q ss_pred CCCCCccccccChhHHHHHHHH-HHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC--------------C--------
Q 004875 243 GPSPSMANAEIKPEVHKLIHDL-VLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--------------L-------- 299 (726)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~l-v~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~--------------~-------- 299 (726)
-.... .. ....+..+. ...+.+.. +.+++|||+.++++..+.++.++. .
T Consensus 520 i~ek~----~~--~~~qamNe~~yeKVm~~a--gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilr 591 (1674)
T KOG0951|consen 520 ITEKK----PL--KRFQAMNEACYEKVLEHA--GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILR 591 (1674)
T ss_pred cccCC----ch--HHHHHHHHHHHHHHHHhC--CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhh
Confidence 11110 00 001111111 12222222 237999999999998877776651 0
Q ss_pred -------------CCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCC
Q 004875 300 -------------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (726)
Q Consensus 300 -------------~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~ 365 (726)
--.+++..+|+||+..+|..+++.|++|. +|+++|.++++|+++|+-+++|- ...+||+.++
T Consensus 592 tea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg 667 (1674)
T KOG0951|consen 592 TEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKG 667 (1674)
T ss_pred hhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCcccC
Confidence 01367889999999999999999999998 99999999999999999998884 3345888875
Q ss_pred ccccceEeecHHhHHHHcCCCCCCC-----CceEEEeechhhH-hhccCCCCC--cccccChH-----HHHHHHhhhhcc
Q 004875 366 IDSAELVWVSQSQAEQRRGRTGRTC-----DGQVYRLVTKSFF-GTLEDHECP--AILRLSLR-----LQVLLICCAESK 432 (726)
Q Consensus 366 ~~~l~~~~iS~a~~~QR~GRaGR~~-----~G~~~~L~s~~~~-~~l~~~~~p--ei~r~~L~-----~~iL~l~~~~~~ 432 (726)
. ...+|.-+..||.|||||.+ .|+.+.=+++-.| -++...+.| +-.-+.|. ++++-+ +
T Consensus 668 ~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv-----~ 738 (1674)
T KOG0951|consen 668 R----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGV-----R 738 (1674)
T ss_pred c----cccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcch-----h
Confidence 3 34569999999999999993 4554444554433 233222222 21111121 222211 1
Q ss_pred cCCChhhhcc-------------------cCCCCCC----HHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCC
Q 004875 433 AISDPKVLLQ-------------------KALDPPY----PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSL 489 (726)
Q Consensus 433 ~l~~~~~~~~-------------------~~l~pP~----~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl 489 (726)
...+...++. ...|++. .+.+..|...|.+.|.|-.+...|..+.|++|+..+.+.+
T Consensus 739 ~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi 818 (1674)
T KOG0951|consen 739 SARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYI 818 (1674)
T ss_pred hHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeee
Confidence 1222212210 0112221 2568899999999999976433577889999999999888
Q ss_pred ChH
Q 004875 490 SFD 492 (726)
Q Consensus 490 ~p~ 492 (726)
.-.
T Consensus 819 ~~~ 821 (1674)
T KOG0951|consen 819 THG 821 (1674)
T ss_pred ecc
Confidence 544
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.90 E-value=8.2e-23 Score=237.79 Aligned_cols=322 Identities=17% Similarity=0.137 Sum_probs=198.1
Q ss_pred CCCCcHHHHHHHHHHHHc---CCcEEEEcCCCChHhHHHHHHHH---hcCCCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 24 SSLPVMSLREKIVEKVLE---NRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~---~~~vii~a~TGSGKTt~ip~~ll---e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
....+++.|.++++.+.+ ++++++.|+||||||..+...+. ..+ +.++++.|.+.++.++.+++.+.++..+.
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~ 219 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARFGAPVA 219 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhCCCEE
Confidence 345689999999999987 47899999999999966655543 333 46777778888888888888876664332
Q ss_pred Ceeeeeecc------ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHH----HHHHHHHHhcC
Q 004875 98 GEVGYHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLV----LVCVKQLLLKK 167 (726)
Q Consensus 98 ~~Vgy~v~~------~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~l----l~~lk~l~~~~ 167 (726)
...|..... ........+|+|+|++.+. ..+.++++|||||+|+-+...+-. ..-+.......
T Consensus 220 ~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~ 292 (679)
T PRK05580 220 VLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL 292 (679)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhc
Confidence 222111000 1112346799999998763 235589999999999644332211 00111223345
Q ss_pred CCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceee-ceehhHHHHHHHhccCCCCccccccccccCCCCC
Q 004875 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQ-RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (726)
Q Consensus 168 ~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~-~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 246 (726)
.+.++|++|||++.+.+.....+ ....+..+.+......| +++.-+.+ ...
T Consensus 293 ~~~~~il~SATps~~s~~~~~~g-----~~~~~~l~~r~~~~~~p~v~~id~~~---~~~-------------------- 344 (679)
T PRK05580 293 ENIPVVLGSATPSLESLANAQQG-----RYRLLRLTKRAGGARLPEVEIIDMRE---LLR-------------------- 344 (679)
T ss_pred cCCCEEEEcCCCCHHHHHHHhcc-----ceeEEEeccccccCCCCeEEEEechh---hhh--------------------
Confidence 67899999999987777665432 12333333221111111 11100000 000
Q ss_pred CccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcH----------------------------------------
Q 004875 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTY---------------------------------------- 286 (726)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~---------------------------------------- 286 (726)
......+.....+ .+.+... .+.++|||+|.+
T Consensus 345 ~~~~~~ls~~l~~-------~i~~~l~-~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~ 416 (679)
T PRK05580 345 GENGSFLSPPLLE-------AIKQRLE-RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGY 416 (679)
T ss_pred hcccCCCCHHHHH-------HHHHHHH-cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcC
Confidence 0000012222222 2222111 134788887753
Q ss_pred --------------------HHHHHHHHHhcCCCCCcEEEEecCCCC--HHHHHHHhhccCCCc-EEEEEcccccccccC
Q 004875 287 --------------------YALEQQWHLMKPLSSFFKVHILHSSVD--TEQALMAMKICKSHR-KVILATNIAESSVTI 343 (726)
Q Consensus 287 --------------------~~i~~l~~~L~~~~~~~~v~~lh~~l~--~~er~~~~~~f~~~r-kVlvaTniae~GIdi 343 (726)
..++++.+.|....++..+..+|+++. .+++.++++.|++++ +|||+|+++++|+|+
T Consensus 417 ~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~ 496 (679)
T PRK05580 417 QEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDF 496 (679)
T ss_pred CCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCC
Confidence 145566666666556788999999986 457888999999988 999999999999999
Q ss_pred CCeeEEE--eCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEe
Q 004875 344 PKVAYVI--DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (726)
Q Consensus 344 p~v~~VI--d~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L 397 (726)
|+|+.|+ | .|.......|....-.-+.+.|++|||||. .+|.++..
T Consensus 497 p~v~lV~il~--------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 497 PNVTLVGVLD--------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred CCcCEEEEEc--------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 9999885 4 444444433322222235679999999996 78988843
No 83
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.90 E-value=5.7e-22 Score=199.99 Aligned_cols=301 Identities=19% Similarity=0.285 Sum_probs=198.8
Q ss_pred cHHHHHHHH----HHHHcCCcEEEEcCCCChHhHH---HHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcC-CccCCe
Q 004875 28 VMSLREKIV----EKVLENRVTLIVGETGCGKSSQ---VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-CELGGE 99 (726)
Q Consensus 28 i~~~Q~~il----~~i~~~~~vii~a~TGSGKTt~---ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~-~~lg~~ 99 (726)
+++.|+.+- ..+.+.++++|.|-||+|||.. .....++.| .+|.++.||--.+..++.|+.+-+. +.+
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~~I--- 173 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNCDI--- 173 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccCCe---
Confidence 456666554 4455778999999999999944 444445554 5788999999999999999988664 432
Q ss_pred eeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHH-HHHHHhcCCCceEEEeccC
Q 004875 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVC-VKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 100 Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~-lk~l~~~~~~lklIlmSAT 178 (726)
....+.++.. -.+.++|+|.-.|+|.-. .++++||||+|---...|-.+.+ ++.. +.+.--+|.||||
T Consensus 174 -~~Lyg~S~~~-fr~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTAT 242 (441)
T COG4098 174 -DLLYGDSDSY-FRAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTAT 242 (441)
T ss_pred -eeEecCCchh-ccccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecC
Confidence 2222222222 238899999999988543 67999999999544445544443 3333 2345568999999
Q ss_pred CCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceeh-hHHHHHHHhccCCCCccccccccccCCCCCCccccccChhH
Q 004875 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVS-YLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (726)
Q Consensus 179 l~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (726)
...+...+.... ....+.+|.+-.+...++.-+ |.....+ ......+.
T Consensus 243 p~k~l~r~~~~g-----~~~~~klp~RfH~~pLpvPkf~w~~~~~k-----------------------~l~r~kl~--- 291 (441)
T COG4098 243 PTKKLERKILKG-----NLRILKLPARFHGKPLPVPKFVWIGNWNK-----------------------KLQRNKLP--- 291 (441)
T ss_pred ChHHHHHHhhhC-----CeeEeecchhhcCCCCCCCceEEeccHHH-----------------------HhhhccCC---
Confidence 876655555432 233455555433333332211 1000000 00000111
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
-.+..++.+.... +.++|||+|+.+..+++++.|+..-....+...|+.- ..|.+..+.|++|. +++++|.|
T Consensus 292 ----~kl~~~lekq~~~-~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTI 364 (441)
T COG4098 292 ----LKLKRWLEKQRKT-GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTI 364 (441)
T ss_pred ----HHHHHHHHHHHhc-CCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeeh
Confidence 1344444443332 4799999999999999999997655566778888843 45777788999999 99999999
Q ss_pred ccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC--C-CceEEEe
Q 004875 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT--C-DGQVYRL 397 (726)
Q Consensus 337 ae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~--~-~G~~~~L 397 (726)
+|+|+|+|+|+++| .+.... .| |+++.+|.+||+||. . .|.++-+
T Consensus 365 LERGVTfp~vdV~V---------lgaeh~--vf-----TesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 365 LERGVTFPNVDVFV---------LGAEHR--VF-----TESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred hhcccccccceEEE---------ecCCcc--cc-----cHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 99999999999987 333332 23 788999999999998 3 4765444
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.90 E-value=6.7e-23 Score=253.10 Aligned_cols=314 Identities=14% Similarity=0.177 Sum_probs=188.1
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHH--HHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCcc--CCeeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCEL--GGEVGY 102 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~--ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~l--g~~Vgy 102 (726)
..+++|.++++.+.++++++++||||||||+. ++...+.....+++++.|.+.++.|++..+.... ... +..+.+
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~-~~~~~~v~v~~ 157 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFC-EKANLDVRLVY 157 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHH-hhcCCceeEEE
Confidence 57899999999999999999999999999962 2222222223356667777777777777765532 122 222333
Q ss_pred eecccc---------c-cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccc-----------ccHHHHHHH
Q 004875 103 HIGHSK---------H-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLVCVK 161 (726)
Q Consensus 103 ~v~~~~---------~-~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-----------~d~ll~~lk 161 (726)
..+... . .....+|+|+|||.|.+.+... ...++++|||||||+ .++ .+|...+..
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECcee-ccccccccchhhhcCCChHHHHH
Confidence 222111 1 1335899999999998766532 114799999999994 432 244333332
Q ss_pred ----HH---------------------Hhc-CCCce-EEEeccCCCH-HHHHHHHhhcCCCcceeEEEecCCCccceeec
Q 004875 162 ----QL---------------------LLK-KNDLR-VVLMSATADI-TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQR 213 (726)
Q Consensus 162 ----~l---------------------~~~-~~~lk-lIlmSATl~~-~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (726)
.+ +.. +...+ ++++|||+.. .....+|... .. +.+... ......+
T Consensus 235 ~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~-----l~-f~v~~~-~~~lr~i 307 (1638)
T PRK14701 235 KAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYREL-----LG-FEVGSG-RSALRNI 307 (1638)
T ss_pred HHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcC-----eE-EEecCC-CCCCCCc
Confidence 11 111 22334 6779999875 3444555431 11 111111 0000001
Q ss_pred eehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHH---HH
Q 004875 214 RVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA---LE 290 (726)
Q Consensus 214 ~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~---i~ 290 (726)
...|+ . ........+.+++ ... +...||||++++. ++
T Consensus 308 ~~~yi-----------------------~----------~~~~~k~~L~~ll----~~~---g~~gIVF~~t~~~~e~ae 347 (1638)
T PRK14701 308 VDVYL-----------------------N----------PEKIIKEHVRELL----KKL---GKGGLIFVPIDEGAEKAE 347 (1638)
T ss_pred EEEEE-----------------------E----------CCHHHHHHHHHHH----HhC---CCCeEEEEeccccchHHH
Confidence 11110 0 0000011122222 222 2478999999875 48
Q ss_pred HHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEc----ccccccccCCC-eeEEEeCCCceeeeecCCC
Q 004875 291 QQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT----NIAESSVTIPK-VAYVIDSCRSLQVFWDVNR 364 (726)
Q Consensus 291 ~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaT----niae~GIdip~-v~~VId~G~~k~~~yd~~~ 364 (726)
.+++.|.. .++.+..+||+ |...++.|++|+ +||||| +++++|||+|+ |+|||+.|.+|.+ |
T Consensus 348 ~la~~L~~--~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~-~---- 415 (1638)
T PRK14701 348 EIEKYLLE--DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFR-F---- 415 (1638)
T ss_pred HHHHHHHH--CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCC-c----
Confidence 89999984 46999999995 778899999999 999999 59999999999 9999994444422 1
Q ss_pred CccccceEe---ecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 365 KIDSAELVW---VSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 365 ~~~~l~~~~---iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
+++.+.... .....+.++.|||||. .++.|+..+..+.+
T Consensus 416 ~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~ 458 (1638)
T PRK14701 416 RVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDV 458 (1638)
T ss_pred chhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHH
Confidence 333221110 0023357888999998 57777655554443
No 85
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.90 E-value=4.5e-22 Score=227.19 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=90.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEcccccccccCC---------Ce
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIP---------KV 346 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae~GIdip---------~v 346 (726)
+.++||||++.+.++.+...|... ++.+..+||.+...++..+.+.++.+ +|+||||+|++|+||| ++
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~~--gi~~~~L~a~~~~~E~~ii~~ag~~g-~VlIATdmAgRGtDI~l~~~v~~~GGL 500 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLRE--GIPHNLLNAQNAAKEAQIIAEAGQKG-AVTVATSMAGRGTDIKLGKGVAELGGL 500 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCCChHHHHHHHHHcCCCC-eEEEEccccccccCCCCCccccccCCe
Confidence 369999999999999999999854 58889999999988887776666554 8999999999999999 99
Q ss_pred eEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 347 AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 347 ~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
.+|++ |+++... ...||+||+||. .||.++.+++.++
T Consensus 501 ~vIit--------~~~ps~r-----------id~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 501 AVIGT--------ERMENSR-----------VDLQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EEEEe--------cCCCCcH-----------HHHHhhhcccCCCCceeEEEEEccch
Confidence 99998 8888632 227999999999 6899999998643
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.90 E-value=8.1e-22 Score=219.06 Aligned_cols=327 Identities=18% Similarity=0.169 Sum_probs=195.8
Q ss_pred CCCCCcHHHHHHHHHHHHc----CCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 23 FSSLPVMSLREKIVEKVLE----NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~----~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
.....+++||+++++++.+ ++..+|++|||+|||......+.+.... ++++.|++.++.|.+++.....+.. .
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~-~Lvlv~~~~L~~Qw~~~~~~~~~~~--~ 108 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS-TLVLVPTKELLDQWAEALKKFLLLN--D 108 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC-EEEEECcHHHHHHHHHHHHHhcCCc--c
Confidence 3456689999999999998 8999999999999998888777766554 7777888888888877777665543 2
Q ss_pred eeeeeeccccccCCCCeEEEEChHHHHHHH-HhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce-EEEec
Q 004875 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEM-RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR-VVLMS 176 (726)
Q Consensus 99 ~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l-~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk-lIlmS 176 (726)
.+|..-+......+ ..|+|+|.+.+.+.- ... +...++++||+||||+... +....+... ..... +++||
T Consensus 109 ~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~-~~~~~~~liI~DE~Hh~~a--~~~~~~~~~----~~~~~~~LGLT 180 (442)
T COG1061 109 EIGIYGGGEKELEP-AKVTVATVQTLARRQLLDE-FLGNEFGLIIFDEVHHLPA--PSYRRILEL----LSAAYPRLGLT 180 (442)
T ss_pred ccceecCceeccCC-CcEEEEEhHHHhhhhhhhh-hcccccCEEEEEccccCCc--HHHHHHHHh----hhcccceeeec
Confidence 23322122222222 679999999998862 221 1223799999999994332 222222222 23334 99999
Q ss_pred cCC---CHHHHHHHHhhcCCCcceeEEEecCC---Ccc-----ceeeceehhHHHHHHHhccCCCCccccccccccCCCC
Q 004875 177 ATA---DITKYRDYFRDLGRGERVEVLAIPST---NQR-----TIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (726)
Q Consensus 177 ATl---~~~~~~~~f~~~~~~~~~~v~~~~~~---~~~-----~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~ 245 (726)
||+ |......+|..+|. .+...+.. ..+ ..+.+...+.++.............+....... ...
T Consensus 181 ATp~R~D~~~~~~l~~~~g~----~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-~~~ 255 (442)
T COG1061 181 ATPEREDGGRIGDLFDLIGP----IVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-LRA 255 (442)
T ss_pred cCceeecCCchhHHHHhcCC----eEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-hhH
Confidence 996 43445555554431 11111100 000 111111111111000000000000000000000 000
Q ss_pred C--CccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhc
Q 004875 246 P--SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (726)
Q Consensus 246 ~--~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~ 323 (726)
. ......... ..+..+-..+.... .+.+++||+....+++.++..+...+ . +..+.+..+.++|..+++.
T Consensus 256 ~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~--~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 256 ENEARRIAIASE---RKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPG--I-VEAITGETPKEEREAILER 327 (442)
T ss_pred HHHHHHHhhccH---HHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCC--c-eEEEECCCCHHHHHHHHHH
Confidence 0 000000000 11111112222221 23689999999999999999998433 4 8888999999999999999
Q ss_pred cCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCC
Q 004875 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD 391 (726)
Q Consensus 324 f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~ 391 (726)
|+.+. ++|+++.++.+|+|+|++.++|- -.+.. |+..+.||+||.-|..+
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~--------~~~t~----------S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLII--------LRPTG----------SRRLFIQRLGRGLRPAE 378 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEE--------eCCCC----------cHHHHHHHhhhhccCCC
Confidence 99977 99999999999999999999996 33322 66778999999999633
No 87
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=236.45 Aligned_cols=321 Identities=18% Similarity=0.178 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC----CCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~----~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
..+|++|.++++.+.++++|||+.+||||||..+..++++.. ..+-+++-|...+|...++++.+... .+|..|+
T Consensus 69 ~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~-~~~~~v~ 147 (851)
T COG1205 69 ERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELIS-DLPGKVT 147 (851)
T ss_pred ccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHH-hCCCcce
Confidence 458999999999999999999999999999976666666543 33556666777777777777766543 2332333
Q ss_pred eee--c---cccc---cCCCCeEEEEChHHHHHHHHhcC----CCCCceeEEEEccccc-ccccccHHHHHHHHHHhc--
Q 004875 102 YHI--G---HSKH---LSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHE-RSVESDLVLVCVKQLLLK-- 166 (726)
Q Consensus 102 y~v--~---~~~~---~~~~~~Iiv~T~g~Ll~~l~~~~----l~l~~~~~VIIDEaHe-R~~~~d~ll~~lk~l~~~-- 166 (726)
..+ + .+.. ....++|+++||.||-..+.... ..+.+.++||+||+|- |+...--+..++|+++..
T Consensus 148 ~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~ 227 (851)
T COG1205 148 FGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLR 227 (851)
T ss_pred eeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHh
Confidence 222 1 1111 35678999999999988655421 1123799999999994 444444444455555443
Q ss_pred --CCCceEEEeccCC-C-HHHHHHHHhhcCCCcceeE-EEecCCCccceeeceehhHHHHHHHhccCCCCcccccccccc
Q 004875 167 --KNDLRVVLMSATA-D-ITKYRDYFRDLGRGERVEV-LAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYC 241 (726)
Q Consensus 167 --~~~lklIlmSATl-~-~~~~~~~f~~~~~~~~~~v-~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~ 241 (726)
..++++|.+|||+ + .+...++|+.. ..+ +.-.+.+....+-+ ..+..
T Consensus 228 ~~~~~~q~i~~SAT~~np~e~~~~l~~~~-----f~~~v~~~g~~~~~~~~~-~~~p~---------------------- 279 (851)
T COG1205 228 RYGSPLQIICTSATLANPGEFAEELFGRD-----FEVPVDEDGSPRGLRYFV-RREPP---------------------- 279 (851)
T ss_pred ccCCCceEEEEeccccChHHHHHHhcCCc-----ceeeccCCCCCCCceEEE-EeCCc----------------------
Confidence 2479999999997 4 44445555431 111 11111111111100 00000
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHH----HhcCCC--CCcEEEEecCCCCHH
Q 004875 242 SGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWH----LMKPLS--SFFKVHILHSSVDTE 315 (726)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~----~L~~~~--~~~~v~~lh~~l~~~ 315 (726)
...... .+..........++.....+ +-++|||+.++..++.+.. .+...+ ....+..+++++..+
T Consensus 280 ---~~~~~~-~~r~s~~~~~~~~~~~~~~~----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~ 351 (851)
T COG1205 280 ---IRELAE-SIRRSALAELATLAALLVRN----GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHRE 351 (851)
T ss_pred ---chhhhh-hcccchHHHHHHHHHHHHHc----CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHH
Confidence 000000 00011111122222222222 3589999999999998863 222222 124588899999999
Q ss_pred HHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCC-Cce
Q 004875 316 QALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQ 393 (726)
Q Consensus 316 er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~-~G~ 393 (726)
+|.+++..|+.|+ +++++||.+|-||||-++..||..|++-. |..++.||+|||||.. .+.
T Consensus 352 er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~-----------------s~~~~~Q~~GRaGR~~~~~l 414 (851)
T COG1205 352 ERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV-----------------SVLSFRQRAGRAGRRGQESL 414 (851)
T ss_pred HHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc-----------------hHHHHHHhhhhccCCCCCce
Confidence 9999999999999 99999999999999999999998555321 4567799999999994 666
Q ss_pred EEEeech
Q 004875 394 VYRLVTK 400 (726)
Q Consensus 394 ~~~L~s~ 400 (726)
.+..+..
T Consensus 415 ~~~v~~~ 421 (851)
T COG1205 415 VLVVLRS 421 (851)
T ss_pred EEEEeCC
Confidence 6666553
No 88
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=7.9e-23 Score=238.85 Aligned_cols=311 Identities=17% Similarity=0.192 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHh--HHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCC---ccCCeeeee
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNC---ELGGEVGYH 103 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKT--t~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~---~lg~~Vgy~ 103 (726)
.+-|.+++.+++.|++++|..|||.||| +|+|.++... ..+|+.|-..+.+-....+. ..+. .++..-+..
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g---itvVISPL~SLm~DQv~~L~-~~~I~a~~L~s~q~~~ 341 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG---VTVVISPLISLMQDQVTHLS-KKGIPACFLSSIQTAA 341 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC---ceEEeccHHHHHHHHHHhhh-hcCcceeeccccccHH
Confidence 4679999999999999999999999999 8888888765 45666675544443333331 1222 222211110
Q ss_pred ec---cccccC--CCCeEEEEChHHHHHHHH--hcCCCCCc---eeEEEEccccccccc-ccHHHHHH--HHHHhcCCCc
Q 004875 104 IG---HSKHLS--ERSKIVFKTAGVLLDEMR--DRGLNALK---YKVIILDEVHERSVE-SDLVLVCV--KQLLLKKNDL 170 (726)
Q Consensus 104 v~---~~~~~~--~~~~Iiv~T~g~Ll~~l~--~~~l~l~~---~~~VIIDEaHeR~~~-~d~ll~~l--k~l~~~~~~l 170 (726)
-+ +..... +..+|+|.||+.+...-. .....+.. +..+||||||.-+-+ -||...+. ..+..+.+..
T Consensus 342 ~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~v 421 (941)
T KOG0351|consen 342 ERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGV 421 (941)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCC
Confidence 00 011112 367999999998864311 11111223 899999999975533 46665553 3344556778
Q ss_pred eEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCC-ccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 004875 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTN-QRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (726)
Q Consensus 171 klIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 249 (726)
.+|.+|||.....-.+....++-..+. ++ ..... .+..+.|.. ...
T Consensus 422 P~iALTATAT~~v~~DIi~~L~l~~~~-~~-~~sfnR~NL~yeV~~-----------------------------k~~-- 468 (941)
T KOG0351|consen 422 PFIALTATATERVREDVIRSLGLRNPE-LF-KSSFNRPNLKYEVSP-----------------------------KTD-- 468 (941)
T ss_pred CeEEeehhccHHHHHHHHHHhCCCCcc-ee-cccCCCCCceEEEEe-----------------------------ccC--
Confidence 999999999887777777766543332 11 11111 111111110 000
Q ss_pred ccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-
Q 004875 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (726)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r- 328 (726)
.+....+...+....+ .+.+||+|.++.+++.++..|+..+ .....+|++|++.+|..+.+.|-.+.
T Consensus 469 --------~~~~~~~~~~~~~~~~--~~s~IIYC~sr~~ce~vs~~L~~~~--~~a~~YHAGl~~~~R~~Vq~~w~~~~~ 536 (941)
T KOG0351|consen 469 --------KDALLDILEESKLRHP--DQSGIIYCLSRKECEQVSAVLRSLG--KSAAFYHAGLPPKERETVQKAWMSDKI 536 (941)
T ss_pred --------ccchHHHHHHhhhcCC--CCCeEEEeCCcchHHHHHHHHHHhc--hhhHhhhcCCCHHHHHHHHHHHhcCCC
Confidence 0111133333333333 3688999999999999999999654 78899999999999999999998877
Q ss_pred EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHhhc
Q 004875 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (726)
Q Consensus 329 kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~~l 406 (726)
+||+||=.+++|||-|||++||+ |..|..++.| +|-+|||||. .+-.|..+|+-.++..+
T Consensus 537 ~VivATVAFGMGIdK~DVR~ViH--------~~lPks~E~Y----------YQE~GRAGRDG~~s~C~l~y~~~D~~~l 597 (941)
T KOG0351|consen 537 RVIVATVAFGMGIDKPDVRFVIH--------YSLPKSFEGY----------YQEAGRAGRDGLPSSCVLLYGYADISEL 597 (941)
T ss_pred eEEEEEeeccCCCCCCceeEEEE--------CCCchhHHHH----------HHhccccCcCCCcceeEEecchhHHHHH
Confidence 99999999999999999999999 8889988888 9999999999 68999999998877543
No 89
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.1e-21 Score=221.47 Aligned_cols=104 Identities=24% Similarity=0.252 Sum_probs=87.6
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCC---Cee-----
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIP---KVA----- 347 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip---~v~----- 347 (726)
.++||||++.+.++.+++.|.. .++.+..+||..+..++.. ..++++. +|+||||+|++|+||+ +|.
T Consensus 474 ~pvLIft~t~~~se~L~~~L~~--~gi~~~~Lhg~~~~rE~~i--i~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGL 549 (656)
T PRK12898 474 RPVLVGTRSVAASERLSALLRE--AGLPHQVLNAKQDAEEAAI--VARAGQRGRITVATNMAGRGTDIKLEPGVAARGGL 549 (656)
T ss_pred CCEEEEeCcHHHHHHHHHHHHH--CCCCEEEeeCCcHHHHHHH--HHHcCCCCcEEEEccchhcccCcCCccchhhcCCC
Confidence 5899999999999999999985 4589999999876555444 4455555 8999999999999999 776
Q ss_pred EEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
+||+ ||.|.+...+ .||+||+||. .+|.++.+++.++
T Consensus 550 hVI~--------~d~P~s~r~y----------~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 550 HVIL--------TERHDSARID----------RQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EEEE--------cCCCCCHHHH----------HHhcccccCCCCCeEEEEEechhH
Confidence 9999 9988866555 9999999999 6899999998643
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.89 E-value=2.1e-21 Score=227.71 Aligned_cols=318 Identities=17% Similarity=0.161 Sum_probs=179.3
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH---Hhc-CCCcEEEecchHHHHHHHHHHHHhhcCCccC-Ce
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL---LAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELG-GE 99 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l---le~-~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg-~~ 99 (726)
....+++|..+.....+...+||.+|||+|||.....+. ... +...|+++-|++..+.++.+|+.+......+ ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 345789999886554456789999999999996544432 222 3458999999999999999998752110000 11
Q ss_pred eeeeeccc-------c--------------------------ccCCCCeEEEEChHHHHHHHHhc-CCCC----CceeEE
Q 004875 100 VGYHIGHS-------K--------------------------HLSERSKIVFKTAGVLLDEMRDR-GLNA----LKYKVI 141 (726)
Q Consensus 100 Vgy~v~~~-------~--------------------------~~~~~~~Iiv~T~g~Ll~~l~~~-~l~l----~~~~~V 141 (726)
++...+.. . +..--..|+|+|...++...... ...+ ..-++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 21111100 0 00012689999998777443321 1111 145799
Q ss_pred EEccccccccccc-HHHHHHHHHHhcCCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHH
Q 004875 142 ILDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQ 220 (726)
Q Consensus 142 IIDEaHeR~~~~d-~ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~ 220 (726)
||||+|-....+. ++..+++.+.. ...++|+||||++.....++....+...++. . ...||.-.. ...
T Consensus 444 IiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~-----~---~~~YPlvt~-~~~ 512 (878)
T PRK09694 444 IVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVE-----L---SSAYPLITW-RGV 512 (878)
T ss_pred EEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccc-----c---ccccccccc-ccc
Confidence 9999995433322 23333443322 3467999999998766655554322110000 0 001111000 000
Q ss_pred HHHHhccCCCCccccccccccCC--CCCCcccc-cc--C--hhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHH
Q 004875 221 VTELLGVDHGMTSELSSLRYCSG--PSPSMANA-EI--K--PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQW 293 (726)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~-~~--~--~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~ 293 (726)
.. .. ......... +.+..... .. . .....++..++..+ . .++++|||+||++.+++++
T Consensus 513 ----~~----~~--~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~----~-~g~~vLVf~NTV~~Aq~ly 577 (878)
T PRK09694 513 ----NG----AQ--RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA----N-AGAQVCLICNLVDDAQKLY 577 (878)
T ss_pred ----cc----ce--eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH----h-cCCEEEEEECCHHHHHHHH
Confidence 00 00 000000000 00000000 00 0 00011222222221 1 2468999999999999999
Q ss_pred HHhcCCC-CCcEEEEecCCCCHHHHH----HHhhcc-CCCc----EEEEEcccccccccCCCeeEEEeCCCceeeeecCC
Q 004875 294 HLMKPLS-SFFKVHILHSSVDTEQAL----MAMKIC-KSHR----KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVN 363 (726)
Q Consensus 294 ~~L~~~~-~~~~v~~lh~~l~~~er~----~~~~~f-~~~r----kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~ 363 (726)
+.|++.. .+..+..+||.++..+|. ++++.| ++++ +|||||+++|+|||| +++++|. ...|
T Consensus 578 ~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlIt--------dlaP 648 (878)
T PRK09694 578 QRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLIT--------QLCP 648 (878)
T ss_pred HHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEE--------CCCC
Confidence 9998643 346899999999999884 455667 4432 799999999999999 5788885 2222
Q ss_pred CCccccceEeecHHhHHHHcCCCCCC
Q 004875 364 RKIDSAELVWVSQSQAEQRRGRTGRT 389 (726)
Q Consensus 364 ~~~~~l~~~~iS~a~~~QR~GRaGR~ 389 (726)
+ .+++||+||+||.
T Consensus 649 --i----------dsLiQRaGR~~R~ 662 (878)
T PRK09694 649 --V----------DLLFQRLGRLHRH 662 (878)
T ss_pred --H----------HHHHHHHhccCCC
Confidence 3 4559999999998
No 91
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1e-21 Score=226.36 Aligned_cols=106 Identities=20% Similarity=0.165 Sum_probs=92.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEcccccccccC---CCee-----
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTI---PKVA----- 347 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae~GIdi---p~v~----- 347 (726)
+.++||||++.+.++.++..|... ++.+..+||.+...++..+...++.+ +|+||||+|++|+|| |+|.
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~~--gi~~~~L~~~~~~~e~~~i~~ag~~g-~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDEA--GIPHNLLNAKNAAKEAQIIAEAGQKG-AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCccHHHHHHHHHcCCCC-eEEEEccchhcCcCCCcccccccccCc
Confidence 469999999999999999999854 58999999999888877776666544 899999999999999 7999
Q ss_pred EEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
+||+ ||.|.+...+ .||+||+||. .+|.++.+++.++
T Consensus 505 ~VI~--------~d~p~s~r~y----------~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 505 AVIG--------TERMESRRVD----------LQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred EEEe--------ccCCCCHHHH----------HHhhccccCCCCCeeEEEEEcchH
Confidence 9999 9988866555 9999999999 6899999988643
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=2.1e-22 Score=226.41 Aligned_cols=293 Identities=21% Similarity=0.207 Sum_probs=178.9
Q ss_pred EEEcCCCChHhHHHHHHH---HhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecc----------ccccCC
Q 004875 46 LIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH----------SKHLSE 112 (726)
Q Consensus 46 ii~a~TGSGKTt~ip~~l---le~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~----------~~~~~~ 112 (726)
++.|+||||||..+...+ ++.+ +.++++.|...++.+.++++.+.++..+ ....+. .+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-~~vLvlvP~i~L~~Q~~~~l~~~f~~~v----~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-KSVLVLVPEIALTPQMIQRFKYRFGSQV----AVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhCCcE----EEEECCCCHHHHHHHHHHHHcC
Confidence 478999999996665444 3443 4577777888888888999887665432 211111 111234
Q ss_pred CCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHH----HHHHHHhcCCCceEEEeccCCCHHHHHHHH
Q 004875 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLV----CVKQLLLKKNDLRVVLMSATADITKYRDYF 188 (726)
Q Consensus 113 ~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~----~lk~l~~~~~~lklIlmSATl~~~~~~~~f 188 (726)
..+|+|+|+..+. ..+.++++|||||+|+-+...+-... -+..+.....+.++|++|||+..+.+....
T Consensus 76 ~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~ 148 (505)
T TIGR00595 76 EILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAK 148 (505)
T ss_pred CCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHh
Confidence 6799999998663 13458899999999964433321110 112233445678999999999877766654
Q ss_pred hhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHH
Q 004875 189 RDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHI 268 (726)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i 268 (726)
.+ .......+.+......+. +..++ +..+ . ....+... ++..+
T Consensus 149 ~g-----~~~~~~l~~r~~~~~~p~-v~vid-----------~~~~-----------~--~~~~ls~~-------l~~~i 191 (505)
T TIGR00595 149 QK-----AYRLLVLTRRVSGRKPPE-VKLID-----------MRKE-----------P--RQSFLSPE-------LITAI 191 (505)
T ss_pred cC-----CeEEeechhhhcCCCCCe-EEEEe-----------cccc-----------c--ccCCccHH-------HHHHH
Confidence 32 122232322211111110 00000 0000 0 00112222 22222
Q ss_pred HhhCCCCCCcEEEEcCcHHH------------------------------------------------------------
Q 004875 269 HKNESDIEKSILVFLPTYYA------------------------------------------------------------ 288 (726)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~------------------------------------------------------------ 288 (726)
.+.... ++++|||+|++.-
T Consensus 192 ~~~l~~-g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~G 270 (505)
T TIGR00595 192 EQTLAA-GEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYG 270 (505)
T ss_pred HHHHHc-CCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeeccc
Confidence 222211 3689999887542
Q ss_pred HHHHHHHhcCCCCCcEEEEecCCCCHHHH--HHHhhccCCCc-EEEEEcccccccccCCCeeEEE--eCCCceeeeecCC
Q 004875 289 LEQQWHLMKPLSSFFKVHILHSSVDTEQA--LMAMKICKSHR-KVILATNIAESSVTIPKVAYVI--DSCRSLQVFWDVN 363 (726)
Q Consensus 289 i~~l~~~L~~~~~~~~v~~lh~~l~~~er--~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VI--d~G~~k~~~yd~~ 363 (726)
++++.+.|.+..++..+..+|++++..++ ..+++.|++++ +|||+|++++.|+|+|+|+.|+ | +|..
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~ 342 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSG 342 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------Cccc
Confidence 46677777766667899999999876654 77899999988 9999999999999999999874 5 5544
Q ss_pred CCccccceEeecHHhHHHHcCCCCCC-CCceEEE
Q 004875 364 RKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYR 396 (726)
Q Consensus 364 ~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~ 396 (726)
-....+.-..-.-+.+.|++|||||. .+|.++.
T Consensus 343 l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 343 LHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred ccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 33333322222335679999999997 6798873
No 93
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=2.3e-21 Score=214.14 Aligned_cols=299 Identities=20% Similarity=0.247 Sum_probs=203.5
Q ss_pred CCcHHHHHHHHHHHHcC------CcEEEEcCCCChHhHHHHHHHH---hcCCCcEEEecchHHHHHHHHHHHHhhcCCcc
Q 004875 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~------~~vii~a~TGSGKTt~ip~~ll---e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~l 96 (726)
+.++..|++++.-|..+ -+=++.|.-|||||......++ +.|. ....-.|++++|.|-+..+++.+. ++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~-Q~ALMAPTEILA~QH~~~~~~~l~-~~ 338 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY-QAALMAPTEILAEQHYESLRKWLE-PL 338 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC-eeEEeccHHHHHHHHHHHHHHHhh-hc
Confidence 44689999999999754 1349999999999955544443 3443 566677889999999988887665 45
Q ss_pred CCeeeeeeccc----------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc
Q 004875 97 GGEVGYHIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK 166 (726)
Q Consensus 97 g~~Vgy~v~~~----------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~ 166 (726)
|-.|++.++.. ...+...+|+|+|...+ .+...+.+..+|||||=| |- .-.-=..+..+
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQH-RF-----GV~QR~~L~~K 407 (677)
T COG1200 339 GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQH-RF-----GVHQRLALREK 407 (677)
T ss_pred CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccc-cc-----cHHHHHHHHHh
Confidence 55677665432 22356799999998644 445567799999999999 32 11111223344
Q ss_pred CC-CceEEEeccCCCHHHH-HHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCC
Q 004875 167 KN-DLRVVLMSATADITKY-RDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (726)
Q Consensus 167 ~~-~lklIlmSATl~~~~~-~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~ 244 (726)
.. ...+++||||+=+..+ -..|+++ ++..+...+.++ -|+....+.
T Consensus 408 G~~~Ph~LvMTATPIPRTLAlt~fgDl------dvS~IdElP~GR-kpI~T~~i~------------------------- 455 (677)
T COG1200 408 GEQNPHVLVMTATPIPRTLALTAFGDL------DVSIIDELPPGR-KPITTVVIP------------------------- 455 (677)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHhccc------cchhhccCCCCC-CceEEEEec-------------------------
Confidence 45 5789999999744444 4556553 222222222111 111111000
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHH--------HHHHHHHhcCCCCCcEEEEecCCCCHHH
Q 004875 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA--------LEQQWHLMKPLSSFFKVHILHSSVDTEQ 316 (726)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~--------i~~l~~~L~~~~~~~~v~~lh~~l~~~e 316 (726)
..-.+ +++..+..... .+.++.|.||-.++ ++.+++.|+....++.+..+||.|+.+|
T Consensus 456 ------~~~~~-------~v~e~i~~ei~-~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~e 521 (677)
T COG1200 456 ------HERRP-------EVYERIREEIA-KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAE 521 (677)
T ss_pred ------cccHH-------HHHHHHHHHHH-cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHH
Confidence 00011 11222222211 24688999997664 5566777776667889999999999999
Q ss_pred HHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceE
Q 004875 317 ALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQV 394 (726)
Q Consensus 317 r~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~ 394 (726)
+.++++.|+++. +|+|||.+.|-|||+|+.++.|. +|+.+ + --|+..|-+||+||. .++.|
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AER----F-----GLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAER----F-----GLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echhh----h-----hHHHHHHhccccCCCCcceEE
Confidence 999999999999 99999999999999999999776 66654 2 335669999999999 78999
Q ss_pred EEeech
Q 004875 395 YRLVTK 400 (726)
Q Consensus 395 ~~L~s~ 400 (726)
+.+|..
T Consensus 585 ~Ll~~~ 590 (677)
T COG1200 585 VLLYKP 590 (677)
T ss_pred EEEeCC
Confidence 999975
No 94
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.88 E-value=8.5e-22 Score=223.53 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=91.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCC-------ee
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPK-------VA 347 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~-------v~ 347 (726)
+.++||||++.+.++.+++.|.+. ++....+|+. +.+|...+..|+++. .|+||||+|++|+||+. ..
T Consensus 405 grpvLV~t~si~~se~ls~~L~~~--gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKER--GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHc--CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 469999999999999999999854 5788899998 778888888899988 99999999999999998 45
Q ss_pred EEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
+||. |+.+.+...+ .||+||+||. .||.+..+++.++
T Consensus 481 ~VI~--------t~~p~s~ri~----------~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 481 YVIG--------TERHESRRID----------NQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred EEEe--------cCCCCcHHHH----------HHHhccccCCCCCcceEEEEeccH
Confidence 9998 7877755444 9999999999 7899998888653
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.87 E-value=1.2e-20 Score=229.11 Aligned_cols=274 Identities=16% Similarity=0.172 Sum_probs=168.8
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH--HhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCC---ee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG---EV 100 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l--le~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~---~V 100 (726)
...+++|..+++.+..|++++++||||||||+.+...+ +.....+++++.|++.+|.|+++.+..... ..|. .+
T Consensus 77 ~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~-~~~i~~~~i 155 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAE-KAGVGTVNI 155 (1171)
T ss_pred CCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHH-hcCCceeee
Confidence 46899999999999999999999999999996332221 112234677777888888888777665331 1111 12
Q ss_pred eeeeccc---------cc-cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccc-----------ccHHHHH
Q 004875 101 GYHIGHS---------KH-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLVC 159 (726)
Q Consensus 101 gy~v~~~---------~~-~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-----------~d~ll~~ 159 (726)
|+..+.. .. ...+.+|+|+||+.|.+.+..- .. ++++||||||| +.++ .+|....
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD-~~L~~~k~vd~il~llGF~~e~ 231 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVD-ALLKASKNVDKLLKLLGFSEEL 231 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChH-hhhhccccHHHHHHHcCCCHHH
Confidence 2221211 01 1245899999999998876542 12 89999999999 4544 1221111
Q ss_pred HHHH----------------------H-hcCCCc--eEEEeccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeec
Q 004875 160 VKQL----------------------L-LKKNDL--RVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQR 213 (726)
Q Consensus 160 lk~l----------------------~-~~~~~l--klIlmSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (726)
+..+ + ..+.+. .++++|||. +...-..+|..+. .+. +... ....-.+
T Consensus 232 i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll---~~~---v~~~-~~~~r~I 304 (1171)
T TIGR01054 232 IEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL---GFE---VGGG-SDTLRNV 304 (1171)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc---ceE---ecCc-cccccce
Confidence 1111 1 111222 367789995 3332223443210 011 1110 0000001
Q ss_pred eehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcH---HHHH
Q 004875 214 RVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTY---YALE 290 (726)
Q Consensus 214 ~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~---~~i~ 290 (726)
...| .. .. .. .+.+.+++ ... ++.+|||+++. +.++
T Consensus 305 ~~~~-----------------------~~--------~~--~~-~~~L~~ll----~~l---~~~~IVFv~t~~~~~~a~ 343 (1171)
T TIGR01054 305 VDVY-----------------------VE--------DE--DL-KETLLEIV----KKL---GTGGIVYVSIDYGKEKAE 343 (1171)
T ss_pred EEEE-----------------------Ee--------cc--cH-HHHHHHHH----HHc---CCCEEEEEeccccHHHHH
Confidence 1111 00 00 00 11122222 222 24689999998 9999
Q ss_pred HHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEE----cccccccccCCC-eeEEEeCCCceee
Q 004875 291 QQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQV 358 (726)
Q Consensus 291 ~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlva----Tniae~GIdip~-v~~VId~G~~k~~ 358 (726)
.+++.|... ++.+..+||+++. .+++.|++|+ +|||| ||++++|||+|+ |+|||+.|.++.+
T Consensus 344 ~l~~~L~~~--g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 344 EIAEFLENH--GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHHHHHHhC--CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 999999854 5899999999973 5689999999 99999 599999999999 8999998887764
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=4.8e-20 Score=222.26 Aligned_cols=350 Identities=17% Similarity=0.224 Sum_probs=195.6
Q ss_pred CCcHHHHHHHHHHHHc-----CCcEEEEcCCCChHhHHHHHH---HHhc-CCCcEEEecchHHHHHHHHHHHHhhcCC--
Q 004875 26 LPVMSLREKIVEKVLE-----NRVTLIVGETGCGKSSQVPQF---LLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNC-- 94 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~-----~~~vii~a~TGSGKTt~ip~~---lle~-~~~~Iivt~Prrlaa~~~a~~va~~~~~-- 94 (726)
+.+++||.++++++.+ ++..+|+++||||||..+... ++.. ...+|+++.+|..++.|....+......
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 5678999999988752 467999999999999443322 2332 3468999999999988887766543110
Q ss_pred -ccCCeeeeeec-cccccCCCCeEEEEChHHHHHHHHhc-----CCCCCceeEEEEccccccccccc-------H-----
Q 004875 95 -ELGGEVGYHIG-HSKHLSERSKIVFKTAGVLLDEMRDR-----GLNALKYKVIILDEVHERSVESD-------L----- 155 (726)
Q Consensus 95 -~lg~~Vgy~v~-~~~~~~~~~~Iiv~T~g~Ll~~l~~~-----~l~l~~~~~VIIDEaHeR~~~~d-------~----- 155 (726)
.+....+.. . .+.......+|+|+|.+.|.+.+... ...+..+++||||||| |+...| .
T Consensus 492 ~~~~~i~~i~-~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIK-GLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchh-hhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 011111100 1 11122446899999999998775421 1234589999999999 764211 0
Q ss_pred --HHHHHHHHHhcCCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCC-Cccceeec--eehhHHHHHHHhccCCC
Q 004875 156 --VLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPST-NQRTIFQR--RVSYLEQVTELLGVDHG 230 (726)
Q Consensus 156 --ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~-~~~~~~~~--~~~yl~~~~~~~~~~~~ 230 (726)
.....+.++.. .+..+|+||||+... ...+|+.. +........ ..+...+. ...|.. .....++...
T Consensus 570 ~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG~p-----v~~Ysl~eAI~DG~Lv~~~~p~~i~t-~~~~~gi~~~ 641 (1123)
T PRK11448 570 LDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFGEP-----VYTYSYREAVIDGYLIDHEPPIRIET-RLSQEGIHFE 641 (1123)
T ss_pred hhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhCCe-----eEEeeHHHHHhcCCcccCcCCEEEEE-Eecccccccc
Confidence 02334555543 356789999998643 34566531 110000000 00000000 000000 0000000000
Q ss_pred Cc--cccccc---cccCCCCCC---ccccc-----cChhHHHHH-HHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHh
Q 004875 231 MT--SELSSL---RYCSGPSPS---MANAE-----IKPEVHKLI-HDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLM 296 (726)
Q Consensus 231 ~~--~~~~~~---~y~~~~~~~---~~~~~-----~~~~~~~li-~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L 296 (726)
.. .+.... .+.....++ +.... +.+...+.+ .+++.++.. .+++++||||.+.++++.+.+.|
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~---~~~~KtiIF~~s~~HA~~i~~~L 718 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP---TGEGKTLIFAATDAHADMVVRLL 718 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc---cCCCcEEEEEcCHHHHHHHHHHH
Confidence 00 000000 000000000 00000 011111122 233333322 12479999999999999988877
Q ss_pred cCC-------CCCcEEEEecCCCCHHHHHHHhhccCCCc--EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCcc
Q 004875 297 KPL-------SSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKID 367 (726)
Q Consensus 297 ~~~-------~~~~~v~~lh~~l~~~er~~~~~~f~~~r--kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~ 367 (726)
... .....+..+||+.+ ++..+++.|+++. +|+|+++++.+|+|+|.|.+||. +++..
T Consensus 719 ~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~rpvk--- 785 (1123)
T PRK11448 719 KEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LRRVR--- 785 (1123)
T ss_pred HHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE--------ecCCC---
Confidence 532 11224566888875 4566889998876 79999999999999999999997 66665
Q ss_pred ccceEeecHHhHHHHcCCCCCCCC--ce-EEEeech-hhHhhccC
Q 004875 368 SAELVWVSQSQAEQRRGRTGRTCD--GQ-VYRLVTK-SFFGTLED 408 (726)
Q Consensus 368 ~l~~~~iS~a~~~QR~GRaGR~~~--G~-~~~L~s~-~~~~~l~~ 408 (726)
|+..|.||+||+.|..+ |+ .+.+++- ..++.+.+
T Consensus 786 -------S~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l~~ 823 (1123)
T PRK11448 786 -------SRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYEALES 823 (1123)
T ss_pred -------CHHHHHHHHhhhccCCccCCCceEEEEehHHHHHhccc
Confidence 55666999999999977 55 5666663 23444433
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.86 E-value=2.2e-20 Score=217.06 Aligned_cols=298 Identities=17% Similarity=0.186 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHc----CC--cEEEEcCCCChHhHHHHHHH--HhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 29 MSLREKIVEKVLE----NR--VTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 29 ~~~Q~~il~~i~~----~~--~vii~a~TGSGKTt~ip~~l--le~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
++=|..+++.+.+ ++ +=+|||.-|-|||-...... .-...+.|.+..|+-++|+|-.+.+.+.+. .++-.|
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~-~fPV~I 674 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFA-GFPVRI 674 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhc-CCCeeE
Confidence 5668888888764 33 44999999999995554443 333446899999999999999998877553 344455
Q ss_pred eeeecccc----------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 004875 101 GYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (726)
Q Consensus 101 gy~v~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~l 170 (726)
+-.-|+.. ......+|+|+|...| ++.+.+.+.+++||||-|. |.-.--.++...+.+.
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqR------FGVk~KEkLK~Lr~~V 743 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQR------FGVKHKEKLKELRANV 743 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhh------cCccHHHHHHHHhccC
Confidence 55545532 1246789999998654 4455677999999999994 2222333444557889
Q ss_pred eEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 004875 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (726)
Q Consensus 171 klIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 250 (726)
-++-||||+=+..+.--..++ ....++..|- ...++++.+..+.
T Consensus 744 DvLTLSATPIPRTL~Msm~Gi---RdlSvI~TPP---~~R~pV~T~V~~~------------------------------ 787 (1139)
T COG1197 744 DVLTLSATPIPRTLNMSLSGI---RDLSVIATPP---EDRLPVKTFVSEY------------------------------ 787 (1139)
T ss_pred cEEEeeCCCCcchHHHHHhcc---hhhhhccCCC---CCCcceEEEEecC------------------------------
Confidence 999999997555554444332 1233333332 2455655443210
Q ss_pred cccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-E
Q 004875 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (726)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-k 329 (726)
...++.+.+. .+-..+|++-.-.|..++++++++.|+.+-++.+|...||.|+..+-+.++..|-+|+ +
T Consensus 788 ------d~~~ireAI~----REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d 857 (1139)
T COG1197 788 ------DDLLIREAIL----RELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD 857 (1139)
T ss_pred ------ChHHHHHHHH----HHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC
Confidence 0112222222 1222358998889999999999999999999999999999999999999999999999 9
Q ss_pred EEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 330 VlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
|+|||.|.|+|||||+++.+|- .+... + --|+..|-+||+||. ..|.||.||+..
T Consensus 858 VLv~TTIIEtGIDIPnANTiII--------e~AD~----f-----GLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 858 VLVCTTIIETGIDIPNANTIII--------ERADK----F-----GLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred EEEEeeeeecCcCCCCCceEEE--------ecccc----c-----cHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999999999884 22221 2 235669999999999 789999999853
No 98
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.82 E-value=8.7e-22 Score=218.04 Aligned_cols=554 Identities=9% Similarity=-0.125 Sum_probs=377.2
Q ss_pred CCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC-------CcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-------EPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 22 ~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~-------~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
.+.-+|.+++.+.+++++..+.++++.+.||||||++.+++++|+-. +.++.++||+..|...+.++.-++++
T Consensus 401 etgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctv 480 (1282)
T KOG0921|consen 401 ETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTV 480 (1282)
T ss_pred cccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeecc
Confidence 34558999999999999999999999999999999999999997532 47999999999999999999888888
Q ss_pred ccCCeeeeeecccc-ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEE
Q 004875 95 ELGGEVGYHIGHSK-HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (726)
Q Consensus 95 ~lg~~Vgy~v~~~~-~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklI 173 (726)
.++...+|..++.. ....+.-+-++|.+.|+..+..+- ....+++.||.|++++++|++..+++.+ .++.
T Consensus 481 gvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m---~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~ 551 (1282)
T KOG0921|consen 481 GVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREM---ISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVT 551 (1282)
T ss_pred chhhhhhhhcccccccccchhhhhhccchHHHHHHHHhh---hccchhhhhhhhhcccchhhhhhhhccc------ccee
Confidence 77777777765433 334566778899999999888763 3778999999999999999999887765 3569
Q ss_pred EeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHH----HHH----hcc-CCCCcccc-ccccccCC
Q 004875 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQV----TEL----LGV-DHGMTSEL-SSLRYCSG 243 (726)
Q Consensus 174 lmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~----~~~----~~~-~~~~~~~~-~~~~y~~~ 243 (726)
++++|.+...|-.++-. .....+|+.. ++++.++.++. .+. .+. +.....+. ....| .
T Consensus 552 ~~grt~pvq~F~led~~------~~~~~vp~~~----~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~--~ 619 (1282)
T KOG0921|consen 552 VHGRTFPVQSFFLEDII------QMTQFVPSEP----SQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMS--R 619 (1282)
T ss_pred eccccccHHHHHHHHhh------hhhhccCCCc----CccchhhcccccCchhhhcccccccccChhhcchhhhhhh--c
Confidence 99999998887776654 2333444432 11111111110 000 000 00000000 00111 1
Q ss_pred CCCCccccccChhHHH--HHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC----CCCcEEEEecCCCCHHHH
Q 004875 244 PSPSMANAEIKPEVHK--LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL----SSFFKVHILHSSVDTEQA 317 (726)
Q Consensus 244 ~~~~~~~~~~~~~~~~--li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~----~~~~~v~~lh~~l~~~er 317 (726)
+........+.+.... ++..+...|..-.+ ++..|+|++++--.......+... .....+...|+.+...+.
T Consensus 620 ~se~d~~f~l~Eal~~~i~s~~i~gailvflp--gwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p 697 (1282)
T KOG0921|consen 620 LSEKDIPFGLIEALLNDIASRNIDGAVLVFLP--GWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVP 697 (1282)
T ss_pred chhhcchhHHHHHHHhhhcccCCccceeeecC--chHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccc
Confidence 1111011111111111 11112222222222 478899999998777776666542 233567778888888777
Q ss_pred HHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEE
Q 004875 318 LMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYR 396 (726)
Q Consensus 318 ~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~ 396 (726)
..+.+....+. +++..|+..++.|.+-.+.+|++++..+.+.+-....++.+.++|-+...-.||.|||+|...+.||.
T Consensus 698 ~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~ 777 (1282)
T KOG0921|consen 698 EGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFE 777 (1282)
T ss_pred ccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHH
Confidence 77777665555 99999999999999999999999999888877777778888899999999999999999999999999
Q ss_pred eechhhHhhccCCCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCC
Q 004875 397 LVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYE 476 (726)
Q Consensus 397 L~s~~~~~~l~~~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~ 476 (726)
+++...+..|..+..|||.++.+....+.++..-.++++.+ ..+.+.+|+..... +..|...+.+.. . |+..
T Consensus 778 ~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~---p~dav~e~e~~l~~--m~~ld~n~elt~-l--g~~l 849 (1282)
T KOG0921|consen 778 ALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPP---PYDAVIEAEAVLRE--MGALDANDELTP-L--GRML 849 (1282)
T ss_pred HHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCC---chhhccCchHHHHH--hhhhhccCcccc-h--hhhh
Confidence 99999999999999999999988877777765445666543 33666666654433 344444444444 2 7778
Q ss_pred CCHhHHHHHhCCCChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccCCCCchHHHHHHhccccCCCCCcccccccchh
Q 004875 477 PTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEM 556 (726)
Q Consensus 477 lT~lG~~l~~lpl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (726)
+|.+|+.....|+.|..+++....+.+-..+-...+++ .+..+.+|.. .+++. .-.+.+|.+.. -+
T Consensus 850 a~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~-~~~~~~~~rl-~g~q~--~~~g~kfsdhv----------a~ 915 (1282)
T KOG0921|consen 850 ARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPF-VPREKHHSRL-SGTQR--KFAGNKFSDHV----------AI 915 (1282)
T ss_pred hhccCcccccceeeechhhccchhhhhhhccccccccc-cccccccccc-ccchh--hccccccccch----------hh
Confidence 99999999999999998886544332211111122222 2333333321 23332 23456665432 25
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhC---
Q 004875 557 VIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFR--- 633 (726)
Q Consensus 557 d~l~~~~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~--- 633 (726)
++...+-.++.|..+... .+....+|..+-++.-+++.-+++..||. .+---+
T Consensus 916 ~~v~q~~r~~~q~ga~~e-----------------------~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~~fpe~~~ 971 (1282)
T KOG0921|consen 916 VSVIQGYREAVQMGAAAE-----------------------REFCERYSLSNPVLKMTDGARRQLIDVLR-QCSFPEDIL 971 (1282)
T ss_pred hhhhhhhHHHhhhhhhhh-----------------------hhHhHhhhhcchhhhhhhhhHHHHHHHHH-hccCccccc
Confidence 777777789999988543 34678899999999999999999999998 554222
Q ss_pred CCccccCCCCC
Q 004875 634 PKFLGTSNGLP 644 (726)
Q Consensus 634 ~~~~~~~~~~~ 644 (726)
.......|+.+
T Consensus 972 ~~~~v~~ng~d 982 (1282)
T KOG0921|consen 972 FDISVNVNGPD 982 (1282)
T ss_pred cceeeccCCCC
Confidence 22233456655
No 99
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.82 E-value=1.7e-18 Score=204.64 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=92.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC--c-EEEEEcccccccccCCCeeEEEeC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH--R-KVILATNIAESSVTIPKVAYVIDS 352 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~--r-kVlvaTniae~GIdip~v~~VId~ 352 (726)
+.++||||+++..+..+.+.|+.. .++.+..+||+|+..+|.++++.|+++ . +|+|||+++++|+|++.+++||+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~-~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn- 570 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRER-EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL- 570 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhc-cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE-
Confidence 369999999999999999999532 358899999999999999999999763 4 99999999999999999999999
Q ss_pred CCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCc--eEEEeechh
Q 004875 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDG--QVYRLVTKS 401 (726)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G--~~~~L~s~~ 401 (726)
||.|.+...| .||+||+||. +.| .+|.++.+.
T Consensus 571 -------fDlP~nP~~~----------eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 571 -------FDLPFNPDLL----------EQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred -------ecCCCCHHHH----------HHHhcccccCCCCceEEEEEccCCC
Confidence 9999987777 9999999998 333 455666543
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.82 E-value=3.5e-19 Score=200.96 Aligned_cols=330 Identities=17% Similarity=0.225 Sum_probs=192.5
Q ss_pred CcHHHHHHHHH--HHHcCCcEEEEcCCCChHhHHHHHHHHhcC---CCcEEEecchHHHHHHHHHHHHhhcCCccCCee-
Q 004875 27 PVMSLREKIVE--KVLENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV- 100 (726)
Q Consensus 27 Pi~~~Q~~il~--~i~~~~~vii~a~TGSGKTt~ip~~lle~~---~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V- 100 (726)
-.|..|.+.+. .++++++.|..+||+.|||...-..++... .+.++..-|-...++.-...... +.+.+|-.|
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~-~~~~~G~~ve 301 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP-FSIDLGFPVE 301 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh-hccccCCcch
Confidence 35777888765 467889999999999999965544443321 12344444544334433333322 222333211
Q ss_pred eeeeccc-cccCCCCeEEEEChHHHHHHH----HhcCCCCCceeEEEEcccccccccc---cHHHHHHHHHHhc--CCCc
Q 004875 101 GYHIGHS-KHLSERSKIVFKTAGVLLDEM----RDRGLNALKYKVIILDEVHERSVES---DLVLVCVKQLLLK--KNDL 170 (726)
Q Consensus 101 gy~v~~~-~~~~~~~~Iiv~T~g~Ll~~l----~~~~l~l~~~~~VIIDEaHeR~~~~---d~ll~~lk~l~~~--~~~l 170 (726)
+|.-++. ....+...+.+||.++-...+ ..+. +..++.|||||.|- ..+. ..+..++.+++-. ...+
T Consensus 302 ~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~--~~~~g~vvVdElhm-i~d~~rg~~lE~~l~k~~y~~~~~~~ 378 (1008)
T KOG0950|consen 302 EYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGR--LDFLGMVVVDELHM-IGDKGRGAILELLLAKILYENLETSV 378 (1008)
T ss_pred hhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCC--ccccCcEEEeeeee-eeccccchHHHHHHHHHHHhccccce
Confidence 1221121 122456789999998765433 2343 34789999999992 2221 1223333333322 2347
Q ss_pred eEEEeccCC-CHHHHHHHHhhcCC---CcceeEEEecCCCccceeec-eehhHHHHHHHhccCCCCccccccccccCCCC
Q 004875 171 RVVLMSATA-DITKYRDYFRDLGR---GERVEVLAIPSTNQRTIFQR-RVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (726)
Q Consensus 171 klIlmSATl-~~~~~~~~f~~~~~---~~~~~v~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~ 245 (726)
++|+||||+ |.+.+++|++..-. -.|++..... ......+.. +..-+.++... |..
T Consensus 379 ~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~i-k~G~~i~~~~r~~~lr~ia~l---------------~~~--- 439 (1008)
T KOG0950|consen 379 QIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYI-KPGSLIYESSRNKVLREIANL---------------YSS--- 439 (1008)
T ss_pred eEeeeecccCChHHHHHHhhhhheecccCcccchhcc-CCCcccccchhhHHHHHhhhh---------------hhh---
Confidence 899999997 88899999985311 1122211111 001111111 11111111100 000
Q ss_pred CCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC--------------------------
Q 004875 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-------------------------- 299 (726)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~-------------------------- 299 (726)
+..+.+. ..+..+..+. .++ +.++|||||++..++.++..+...
T Consensus 440 -~~g~~dp-D~~v~L~tet-------~~e-~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 440 -NLGDEDP-DHLVGLCTET-------APE-GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred -hcccCCC-cceeeehhhh-------hhc-CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 0000000 0001111111 121 356999999999998877554210
Q ss_pred ----------CCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccc
Q 004875 300 ----------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDS 368 (726)
Q Consensus 300 ----------~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~ 368 (726)
.-.+.+..+|+|++.++|..+...|+.|- .|++||++++.|++.|..+++|-. |.-
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira---------P~~---- 576 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA---------PYV---- 576 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC---------Ccc----
Confidence 01246788999999999999999999998 999999999999999999999952 222
Q ss_pred cceEeecHHhHHHHcCCCCCC---CCceEEEeechhhH
Q 004875 369 AELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFF 403 (726)
Q Consensus 369 l~~~~iS~a~~~QR~GRaGR~---~~G~~~~L~s~~~~ 403 (726)
.....++.+|.||+|||||+ .-|.++..+.+.+.
T Consensus 577 -g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 577 -GREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred -ccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 22344788999999999999 46999999987653
No 101
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.77 E-value=2.7e-18 Score=177.31 Aligned_cols=258 Identities=18% Similarity=0.229 Sum_probs=162.0
Q ss_pred cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccc--ccccHHHHHHHHHHhcC---CCceEEEeccCC---
Q 004875 108 KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERS--VESDLVLVCVKQLLLKK---NDLRVVLMSATA--- 179 (726)
Q Consensus 108 ~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~--~~~d~ll~~lk~l~~~~---~~lklIlmSATl--- 179 (726)
.+...+++|+++|||++++.+..+.+.+.++.++++||++--. .++|++..+.+++.... ..++.+++|||+
T Consensus 334 ~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~f 413 (725)
T KOG0349|consen 334 KQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIF 413 (725)
T ss_pred HHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEE
Confidence 4456789999999999999999887777899999999999321 34567666665554443 348999999996
Q ss_pred CHHHHHHHHhhcCCCcceeEEEecCCC--ccceeece-------ehhHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 004875 180 DITKYRDYFRDLGRGERVEVLAIPSTN--QRTIFQRR-------VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (726)
Q Consensus 180 ~~~~~~~~f~~~~~~~~~~v~~~~~~~--~~~~~~~~-------~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 250 (726)
+..++.+-.-. +|..| ...+.+ ....+.+. ..-..+....+..+..-..+ ...+....
T Consensus 414 eVkk~~ervmh----fptwV-dLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kd--------n~~pg~~S 480 (725)
T KOG0349|consen 414 EVKKVGERVMH----FPTWV-DLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKD--------NLLPGQVS 480 (725)
T ss_pred Eeeehhhhhcc----CceeE-ecccccccchhhccceeecCCccCccHHHHhhhhccCCccccc--------ccccccCC
Confidence 33333322210 00100 000000 00000000 00011111111111000000 00000000
Q ss_pred cccChhHHHHH--HHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC-CCCcEEEEecCCCCHHHHHHHhhccCCC
Q 004875 251 AEIKPEVHKLI--HDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTEQALMAMKICKSH 327 (726)
Q Consensus 251 ~~~~~~~~~li--~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~-~~~~~v~~lh~~l~~~er~~~~~~f~~~ 327 (726)
.+.......+. +..+..|.+... .+.+|||.|+.+|+.+.+++.+. +..+.+..+||+..++||++.++.|+..
T Consensus 481 pe~~s~a~kilkgEy~v~ai~~h~m---dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~ 557 (725)
T KOG0349|consen 481 PENPSSATKILKGEYGVVAIRRHAM---DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF 557 (725)
T ss_pred CCChhhhhHHhcCchhhhhhhhhcc---CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc
Confidence 00111111111 123444444443 48899999999999999998765 4579999999999999999999999988
Q ss_pred c-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeec
Q 004875 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (726)
Q Consensus 328 r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s 399 (726)
. |.+||||+|++|+||.++.|+|+ -..| -.|.+|+||+||.||. +-|.++.|..
T Consensus 558 dvkflictdvaargldi~g~p~~in--------vtlp----------d~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 558 DVKFLICTDVAARGLDITGLPFMIN--------VTLP----------DDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred CeEEEEEehhhhccccccCCceEEE--------EecC----------cccchhhhhhhccchhhhcceeEEEee
Confidence 8 99999999999999999999998 2223 3455669999999999 7799999875
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.76 E-value=2.8e-17 Score=193.49 Aligned_cols=317 Identities=21% Similarity=0.229 Sum_probs=179.6
Q ss_pred CCCCCcHHHHHHHHHHHHcC---C-cEEEEcCCCChHhHHHHHHH---Hhc---CCCcEEEecchHHHHHHHHHHHHhhc
Q 004875 23 FSSLPVMSLREKIVEKVLEN---R-VTLIVGETGCGKSSQVPQFL---LAE---NMEPILCTQPRRFAVVAVAKMVAKGR 92 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~---~-~vii~a~TGSGKTt~ip~~l---le~---~~~~Iivt~Prrlaa~~~a~~va~~~ 92 (726)
...-+.++.|..+++.+... + .+++.||||+|||++...+. ++. ...+++.+.|.+.+....++++....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 191 FIEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred ccCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 34456678899998887643 5 88999999999996655443 333 34689999999999999999987644
Q ss_pred CC--ccCC-eeeeee----ccccc---c----CC-----CCeEEEECh-HHHHHHHHhcCC---CCCceeEEEEcccccc
Q 004875 93 NC--ELGG-EVGYHI----GHSKH---L----SE-----RSKIVFKTA-GVLLDEMRDRGL---NALKYKVIILDEVHER 149 (726)
Q Consensus 93 ~~--~lg~-~Vgy~v----~~~~~---~----~~-----~~~Iiv~T~-g~Ll~~l~~~~l---~l~~~~~VIIDEaHeR 149 (726)
+. ..+. ..|... ...+. . .. -..+.++|+ ..+......... .....+++|+||+|-.
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 32 1111 111110 00000 0 00 012333333 333311111111 1126789999999933
Q ss_pred cccccHHHHHHHHHHh-cCCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccC
Q 004875 150 SVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVD 228 (726)
Q Consensus 150 ~~~~d~ll~~lk~l~~-~~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 228 (726)
.-++ .+..+++.+.. ...+.++|+||||++......+....+....+.. ..+......-+.+...+..
T Consensus 351 ~~~~-~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~--------- 419 (733)
T COG1203 351 ADET-MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVE-NAKFCPKEDEPGLKRKERV--------- 419 (733)
T ss_pred cccc-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceec-cccccccccccccccccch---------
Confidence 3331 22222222221 2346799999999986544444433222211111 0000000000000000000
Q ss_pred CCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEe
Q 004875 229 HGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHIL 308 (726)
Q Consensus 229 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~l 308 (726)
....... .+....+. ...+.+++++|-+||+..+.++++.|+.... .+..+
T Consensus 420 -----------------------~~~~~~~---~~~~~~~~-~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~Ll 470 (733)
T COG1203 420 -----------------------DVEDGPQ---EELIELIS-EEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLL 470 (733)
T ss_pred -----------------------hhhhhhh---Hhhhhcch-hhhccCCcEEEEEecHHHHHHHHHHHHhcCC--CEEEE
Confidence 0000000 01111111 1122357999999999999999999996654 79999
Q ss_pred cCCCCHHHHHHHhhcc----CCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHc
Q 004875 309 HSSVDTEQALMAMKIC----KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (726)
Q Consensus 309 h~~l~~~er~~~~~~f----~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~ 383 (726)
||.+...+|.+.++.. +... .|+|||.+.|.|+|| +.+++|- -...++++ .||+
T Consensus 471 HSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mIT----------e~aPidSL----------IQR~ 529 (733)
T COG1203 471 HSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLIT----------ELAPIDSL----------IQRA 529 (733)
T ss_pred ecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeee----------cCCCHHHH----------HHHH
Confidence 9999999988876642 3344 999999999999999 4777772 23445555 9999
Q ss_pred CCCCCCC---CceEEEeech
Q 004875 384 GRTGRTC---DGQVYRLVTK 400 (726)
Q Consensus 384 GRaGR~~---~G~~~~L~s~ 400 (726)
||++|.+ +|..|..-..
T Consensus 530 GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 530 GRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred HHHhhcccccCCceeEeecc
Confidence 9999995 5666655443
No 103
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.75 E-value=2.7e-17 Score=167.41 Aligned_cols=309 Identities=18% Similarity=0.170 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHh--HHHHHHHHhcCCCcEEEecchH-HHHHHHHHHHHhhcCCccCCeeeeee-
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRR-FAVVAVAKMVAKGRNCELGGEVGYHI- 104 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKT--t~ip~~lle~~~~~Iivt~Prr-laa~~~a~~va~~~~~~lg~~Vgy~v- 104 (726)
.|.|.+++.+...+.+++++.|||.||| +|+|..+.+ +. .+++.|-- +.-.++-. -+.+|..-...-.-..
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad-g~--alvi~plislmedqil~--lkqlgi~as~lnanssk 170 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD-GF--ALVICPLISLMEDQILQ--LKQLGIDASMLNANSSK 170 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC-Cc--eEeechhHHHHHHHHHH--HHHhCcchhhccCcccH
Confidence 5788899999999999999999999999 677766543 32 33334422 21111111 1222221111000000
Q ss_pred ----cccc---ccCCCCeEEEEChHHHHHH--HH---hcCCCCCceeEEEEcccccccc-cccHHHH--HHHHHHhcCCC
Q 004875 105 ----GHSK---HLSERSKIVFKTAGVLLDE--MR---DRGLNALKYKVIILDEVHERSV-ESDLVLV--CVKQLLLKKND 169 (726)
Q Consensus 105 ----~~~~---~~~~~~~Iiv~T~g~Ll~~--l~---~~~l~l~~~~~VIIDEaHeR~~-~~d~ll~--~lk~l~~~~~~ 169 (726)
+.+. .-...-+++|.||+.+... ++ .+.+....+..|-|||+|.-+- ..||... .+..+.+..+.
T Consensus 171 e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~ 250 (695)
T KOG0353|consen 171 EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKG 250 (695)
T ss_pred HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCC
Confidence 0000 1134568999999987542 21 1334445789999999996432 2233321 23333345688
Q ss_pred ceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 004875 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (726)
Q Consensus 170 lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 249 (726)
..+|+++||.....+.+.-+.++-...... ..+.... ...|.....|.
T Consensus 251 ~~iigltatatn~vl~d~k~il~ie~~~tf--~a~fnr~----------------------------nl~yev~qkp~-- 298 (695)
T KOG0353|consen 251 APIIGLTATATNHVLDDAKDILCIEAAFTF--RAGFNRP----------------------------NLKYEVRQKPG-- 298 (695)
T ss_pred CceeeeehhhhcchhhHHHHHHhHHhhhee--ecccCCC----------------------------CceeEeeeCCC--
Confidence 899999999754444333222110000000 0010000 00011001111
Q ss_pred ccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-
Q 004875 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (726)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r- 328 (726)
...+.+++++..|...-. +..-||||-++.++++++..|+.+ ++....+|+.|.++++.-+-+.+-.++
T Consensus 299 ------n~dd~~edi~k~i~~~f~--gqsgiiyc~sq~d~ekva~alkn~--gi~a~~yha~lep~dks~~hq~w~a~ei 368 (695)
T KOG0353|consen 299 ------NEDDCIEDIAKLIKGDFA--GQSGIIYCFSQKDCEKVAKALKNH--GIHAGAYHANLEPEDKSGAHQGWIAGEI 368 (695)
T ss_pred ------ChHHHHHHHHHHhccccC--CCcceEEEeccccHHHHHHHHHhc--CccccccccccCccccccccccccccce
Confidence 011233344444433322 245599999999999999999954 488889999999999888878887888
Q ss_pred EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHH---------------------------
Q 004875 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ--------------------------- 381 (726)
Q Consensus 329 kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~Q--------------------------- 381 (726)
.|||||-...+|||-|+|++||+ ...+.+++.| .|
T Consensus 369 qvivatvafgmgidkpdvrfvih--------hsl~ksieny----------yqasarillrmtkqknksdtggstqinil 430 (695)
T KOG0353|consen 369 QVIVATVAFGMGIDKPDVRFVIH--------HSLPKSIENY----------YQASARILLRMTKQKNKSDTGGSTQINIL 430 (695)
T ss_pred EEEEEEeeecccCCCCCeeEEEe--------cccchhHHHH----------HHHHHHHHHHHhhhcccccCCCcceeehh
Confidence 99999999999999999999998 5555544444 66
Q ss_pred ----------------HcCCCCCC-CCceEEEeechhh
Q 004875 382 ----------------RRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 382 ----------------R~GRaGR~-~~G~~~~L~s~~~ 402 (726)
..|||||. .+..|+..|.-.+
T Consensus 431 evctnfkiffavfsekesgragrd~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 431 EVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFAD 468 (695)
T ss_pred hhhccceeeeeeecchhccccccCCCcccEEEEechHH
Confidence 78999999 7888988887543
No 104
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=8.1e-18 Score=163.25 Aligned_cols=276 Identities=18% Similarity=0.280 Sum_probs=169.9
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC-----CCcE-EEecchHHHHHHH---HHHHHhhcCC-ccC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPI-LCTQPRRFAVVAV---AKMVAKGRNC-ELG 97 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~-----~~~I-ivt~Prrlaa~~~---a~~va~~~~~-~lg 97 (726)
.+.+|.++++...-|-+++..|..|-|||..+....++.. ...+ ++..+|++| -++ ..|+++.+.. ++.
T Consensus 65 psevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrela-fqi~~ey~rfskymP~vkva 143 (387)
T KOG0329|consen 65 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELA-FQISKEYERFSKYMPSVKVS 143 (387)
T ss_pred chHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHH-HHHHHHHHHHHhhCCCceEE
Confidence 3678889988877788999999999999965555444332 1234 444555554 444 3445554431 111
Q ss_pred Cee-eeeecc-ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 98 GEV-GYHIGH-SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 98 ~~V-gy~v~~-~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
--. |..+.. +.....-++|+++|||+++.+.+++.+++.++.++|+|||+...-..|....+-......+.+-|+..+
T Consensus 144 VFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmf 223 (387)
T KOG0329|consen 144 VFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 223 (387)
T ss_pred EEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeee
Confidence 000 112222 223344689999999999999999999999999999999995444456555555555555677899999
Q ss_pred ccCCCHHH--HHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 004875 176 SATADITK--YRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (726)
Q Consensus 176 SATl~~~~--~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (726)
|||++.+. ...-|-. .|.++. +........+....+|+.- .+..-
T Consensus 224 satlskeiRpvC~kFmQ----dPmEi~-vDdE~KLtLHGLqQ~YvkL----------------------------ke~eK 270 (387)
T KOG0329|consen 224 SATLSKEIRPVCHKFMQ----DPMEIF-VDDEAKLTLHGLQQYYVKL----------------------------KENEK 270 (387)
T ss_pred eeecchhhHHHHHhhhc----Cchhhh-ccchhhhhhhhHHHHHHhh----------------------------hhhhh
Confidence 99986542 1111210 122211 1111111111112222110 00000
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEE
Q 004875 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILA 333 (726)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlva 333 (726)
+.... +++..+ + ..+++||+.+... ++ | .++ +||
T Consensus 271 Nrkl~----dLLd~L---e---FNQVvIFvKsv~R-----------------------l~----------f--~kr-~va 304 (387)
T KOG0329|consen 271 NRKLN----DLLDVL---E---FNQVVIFVKSVQR-----------------------LS----------F--QKR-LVA 304 (387)
T ss_pred hhhhh----hhhhhh---h---hcceeEeeehhhh-----------------------hh----------h--hhh-hHH
Confidence 11111 121111 1 2477888877643 00 2 124 899
Q ss_pred cccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 334 Tniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
||+..+|+||..|+.|+| ||.|...++| +||.|||||. ..|.++.+.+.+
T Consensus 305 t~lfgrgmdiervNi~~N--------Ydmp~~~DtY----------lHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 305 TDLFGRGMDIERVNIVFN--------YDMPEDSDTY----------LHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred hhhhccccCcccceeeec--------cCCCCCchHH----------HHHhhhhhccccccceeehhcch
Confidence 999999999999999999 9999988888 9999999999 679999888754
No 105
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.7e-16 Score=183.11 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEccccc
Q 004875 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAE 338 (726)
Q Consensus 259 ~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae 338 (726)
..+.+-+...+.. +.++||||++.+..+.+++.|.. .++....||+.+...++..+.+.|+.| .|+||||+|+
T Consensus 431 ~av~~~i~~~~~~----g~PVLVgt~Sie~sE~ls~~L~~--~gi~h~vLnak~~q~Ea~iia~Ag~~G-~VtIATNmAG 503 (896)
T PRK13104 431 QAIIEDVRECGVR----KQPVLVGTVSIEASEFLSQLLKK--ENIKHQVLNAKFHEKEAQIIAEAGRPG-AVTIATNMAG 503 (896)
T ss_pred HHHHHHHHHHHhC----CCCEEEEeCcHHHHHHHHHHHHH--cCCCeEeecCCCChHHHHHHHhCCCCC-cEEEeccCcc
Confidence 3344444444443 46999999999999999999995 458899999999999999999999988 5999999999
Q ss_pred ccccCC
Q 004875 339 SSVTIP 344 (726)
Q Consensus 339 ~GIdip 344 (726)
+|+||-
T Consensus 504 RGtDI~ 509 (896)
T PRK13104 504 RGTDIV 509 (896)
T ss_pred CCccee
Confidence 999985
No 106
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.73 E-value=3e-16 Score=175.88 Aligned_cols=357 Identities=15% Similarity=0.189 Sum_probs=197.4
Q ss_pred CCCCcHHHHHHHHHHHH----cC-CcEEEEcCCCChHhHHHHHH---HHhcCC-CcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 24 SSLPVMSLREKIVEKVL----EN-RVTLIVGETGCGKSSQVPQF---LLAENM-EPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~----~~-~~vii~a~TGSGKTt~ip~~---lle~~~-~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
..+-...||..++..+. +| +.+++++.||+|||....++ |+..++ ++|++..-|..+..|....+...+.
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P- 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP- 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC-
Confidence 44566789988887765 33 56999999999999333222 333333 6899999999888777665555432
Q ss_pred ccCCeeeeeeccccccCCCCeEEEEChHHHHHHHHhc-----CCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCC
Q 004875 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDR-----GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (726)
Q Consensus 95 ~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~-----~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~ 169 (726)
-|..+... .+......++|.++|.+.+....... ++....+++||||||| |++..+.- +++.-+ .
T Consensus 241 -~~~~~n~i--~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYF----d- 310 (875)
T COG4096 241 -FGTKMNKI--EDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYF----D- 310 (875)
T ss_pred -Cccceeee--ecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHH----H-
Confidence 22222211 12223346899999999998877543 2333479999999999 88766543 222221 1
Q ss_pred ceEEEeccCCCHH---HHHHHHhhc-C----------CC--cceeEEEecCCCccceeeceehhHHHHHHHhccCCCCcc
Q 004875 170 LRVVLMSATADIT---KYRDYFRDL-G----------RG--ERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTS 233 (726)
Q Consensus 170 lklIlmSATl~~~---~~~~~f~~~-~----------~~--~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 233 (726)
.-.++++||+... .--.||++. . .+ .+..++.++.. ++..-.+.+...+.
T Consensus 311 A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~-----~~~~G~~~~~~ser--------- 376 (875)
T COG4096 311 AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTD-----FDLDGWKPDAGSER--------- 376 (875)
T ss_pred HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeee-----ccccCcCcCccchh---------
Confidence 1234559997432 122355311 0 00 00111111110 00000000000000
Q ss_pred ccccccccCCCCCCcccc-----ccChhHHHHHHHHHHHHHhh--CCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCc---
Q 004875 234 ELSSLRYCSGPSPSMANA-----EIKPEVHKLIHDLVLHIHKN--ESDIEKSILVFLPTYYALEQQWHLMKPLSSFF--- 303 (726)
Q Consensus 234 ~~~~~~y~~~~~~~~~~~-----~~~~~~~~li~~lv~~i~~~--~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~--- 303 (726)
+.....-.......+... .....-.+.+...+...... ..+..+++||||.+..+++.+...|....+++
T Consensus 377 ek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~ 456 (875)
T COG4096 377 EKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGR 456 (875)
T ss_pred hhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCc
Confidence 000000000000011111 11112234445555554444 22225799999999999999999997643332
Q ss_pred EEEEecCCCCHHHHHHHhhccCC-Cc--EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHH
Q 004875 304 KVHILHSSVDTEQALMAMKICKS-HR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE 380 (726)
Q Consensus 304 ~v~~lh~~l~~~er~~~~~~f~~-~r--kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~ 380 (726)
-+..+.+.-...++ .+..|.. .+ +|.++.+++.||||+|.|..+|- +..- -|+.-|.
T Consensus 457 ~a~~IT~d~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF---------~r~V---------rSktkF~ 516 (875)
T COG4096 457 YAMKITGDAEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF---------DRKV---------RSKTKFK 516 (875)
T ss_pred eEEEEeccchhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeeee---------hhhh---------hhHHHHH
Confidence 24445554433332 2344432 33 99999999999999999999883 3221 1788889
Q ss_pred HHcCCCCCCCC--c------eEEEeec---hhhHhhccCCCCCcccccChHHHHHH
Q 004875 381 QRRGRTGRTCD--G------QVYRLVT---KSFFGTLEDHECPAILRLSLRLQVLL 425 (726)
Q Consensus 381 QR~GRaGR~~~--G------~~~~L~s---~~~~~~l~~~~~pei~r~~L~~~iL~ 425 (726)
||+||+-|..+ | .-|.++. -.+|-.+.+...+.-.+.++..-++.
T Consensus 517 QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~ 572 (875)
T COG4096 517 QMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFA 572 (875)
T ss_pred HHhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhh
Confidence 99999999843 3 2455554 23444566666666666666655443
No 107
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.1e-16 Score=183.87 Aligned_cols=105 Identities=23% Similarity=0.223 Sum_probs=89.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEcccccccccCC---Cee-----
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIP---KVA----- 347 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae~GIdip---~v~----- 347 (726)
+.++||||++.+..+.++..|.+. ++....+|+.....|+..+.++++.| .|+||||+|++|+||+ +|.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~--gi~~~~Lna~~~~~Ea~ii~~ag~~g-~VtIATnmAGRGtDI~l~~~V~~~GGL 516 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEA--GIPHAVLNAKNHAKEAEIIMNAGQRG-AVTIATNMAGRGTDIKLGPGVKELGGL 516 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC--CCCeeEecCCcHHHHHHHHHhcCCCc-eEEEEeccccCCCCCCCCcchhhhCCc
Confidence 469999999999999999999854 47888999998877777777666555 5999999999999994 899
Q ss_pred EEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
+||. |+.+.+...+ .||.|||||. .||.+..+++-+
T Consensus 517 hVI~--------te~pes~ri~----------~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 517 AVIG--------TERHESRRID----------NQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred EEEe--------eecCCcHHHH----------HHHhhhhccCCCCcceEEEEecc
Confidence 9998 7777755555 9999999999 789998888754
No 108
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.70 E-value=1.8e-16 Score=153.42 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc---C-CCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeee
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---N-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~---~-~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v 104 (726)
+++|.++++.+.+++++++.||||+|||+.+..+++.. + ...++++.|.+.++.+...++...... .+..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-ccccccccc
Confidence 57999999999999999999999999998777666542 2 237888888888888888888776554 222222222
Q ss_pred ccc-------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHH---HHHHHHHHhcCCCceEEE
Q 004875 105 GHS-------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLV---LVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 105 ~~~-------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~l---l~~lk~l~~~~~~lklIl 174 (726)
+.. .....+.+|+|+||++|++.+......+.++++|||||+|+.... ++. ..+++. +...++.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~-~~~~~~~~~i~ 157 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRR-LKRFKNIQIIL 157 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHH-SHTTTTSEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHH-hcCCCCCcEEE
Confidence 211 112356999999999999999875555668999999999954332 222 222222 22234689999
Q ss_pred eccCCCHHHHH
Q 004875 175 MSATADITKYR 185 (726)
Q Consensus 175 mSATl~~~~~~ 185 (726)
||||+. ..+.
T Consensus 158 ~SAT~~-~~~~ 167 (169)
T PF00270_consen 158 LSATLP-SNVE 167 (169)
T ss_dssp EESSST-HHHH
T ss_pred EeeCCC-hhHh
Confidence 999998 5444
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=6.9e-16 Score=177.94 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
.+.+.+.+...+.. +.++||||++.+.++.+++.|.. .++....+|+. +.+|...+..|+++. .|+||||+
T Consensus 416 ~~aI~~~I~~~~~~----grpVLIft~Si~~se~Ls~~L~~--~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNm 487 (830)
T PRK12904 416 FDAVVEDIKERHKK----GQPVLVGTVSIEKSELLSKLLKK--AGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNM 487 (830)
T ss_pred HHHHHHHHHHHHhc----CCCEEEEeCcHHHHHHHHHHHHH--CCCceEeccCc--hHHHHHHHHHhcCCCceEEEeccc
Confidence 34444444444332 36999999999999999999985 45888899995 678888889999998 99999999
Q ss_pred ccccccCC
Q 004875 337 AESSVTIP 344 (726)
Q Consensus 337 ae~GIdip 344 (726)
|++|+||+
T Consensus 488 AGRGtDI~ 495 (830)
T PRK12904 488 AGRGTDIK 495 (830)
T ss_pred ccCCcCcc
Confidence 99999997
No 110
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.65 E-value=2.7e-14 Score=160.76 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=108.8
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHH----HHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcC-Ccc--CC
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ----VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-CEL--GG 98 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~----ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~-~~l--g~ 98 (726)
+-....|.+.++.+..+..++|+|||.+|||+. +-..+.+...+.++.+.|...+.-+++..+-..++ ..+ |.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 666789999999999999999999999999954 33334455556888888888887777665544432 111 11
Q ss_pred -eeeeeeccccccCCCCeEEEEChHHHHHHHHhcCC---CCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 99 -EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 99 -~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l---~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
..|-..+.-+...-+++|+|+-|+.+-..+.+.+. ...++.+||+||+|.-+ +.+- ++++..+.....+.+|+
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG-~~ed--~l~~Eqll~li~CP~L~ 666 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIG-NEED--GLLWEQLLLLIPCPFLV 666 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcc-cccc--chHHHHHHHhcCCCeeE
Confidence 11111111122233689999999999888876422 23489999999999422 2221 22222222234578999
Q ss_pred eccCC-CHHHHHHHHhhc
Q 004875 175 MSATA-DITKYRDYFRDL 191 (726)
Q Consensus 175 mSATl-~~~~~~~~f~~~ 191 (726)
+|||+ |+..+..|.+..
T Consensus 667 LSATigN~~l~qkWlnq~ 684 (1330)
T KOG0949|consen 667 LSATIGNPNLFQKWLNQR 684 (1330)
T ss_pred EecccCCHHHHHHHHHHH
Confidence 99997 899999998843
No 111
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.65 E-value=1.5e-14 Score=168.66 Aligned_cols=335 Identities=14% Similarity=0.130 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHH----c------CCcEEEEcCCCChHhHHHHHH---HHh-cCCCcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 29 MSLREKIVEKVL----E------NRVTLIVGETGCGKSSQVPQF---LLA-ENMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 29 ~~~Q~~il~~i~----~------~~~vii~a~TGSGKTt~ip~~---lle-~~~~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
..+|..++..+. + .+..+|..+||||||..+... ++. ....+|+++.||..+..|..+.+......
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~ 319 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKD 319 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCC
Confidence 456777776653 2 357899999999999444333 332 23457888999998888888777654321
Q ss_pred ccCCeeeeeeccccc-cCCCCeEEEEChHHHHHHHHhc--CCCCC-ceeEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 004875 95 ELGGEVGYHIGHSKH-LSERSKIVFKTAGVLLDEMRDR--GLNAL-KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (726)
Q Consensus 95 ~lg~~Vgy~v~~~~~-~~~~~~Iiv~T~g~Ll~~l~~~--~l~l~-~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~l 170 (726)
.. ..++..-..... ......|+|+|.+.+.+.+... ..... .-.+||+|||| |+...++. +.+....|+.
T Consensus 320 ~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~~~p~a 393 (667)
T TIGR00348 320 CA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKKALKNA 393 (667)
T ss_pred CC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHhhCCCC
Confidence 11 001110001111 1235789999999998654321 11111 12389999999 77654432 2222345778
Q ss_pred eEEEeccCCCH----HHHHHHHhhcCCCcceeEEEecCC-CccceeeceehhHHHHHHHhccCCCCccccccccccCCCC
Q 004875 171 RVVLMSATADI----TKYRDYFRDLGRGERVEVLAIPST-NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (726)
Q Consensus 171 klIlmSATl~~----~~~~~~f~~~~~~~~~~v~~~~~~-~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~ 245 (726)
..+++|||+-. ..+ ..|+.. .+..+....+... ..+...+ +.|.....+. ..+...-.......+...+.
T Consensus 394 ~~lGfTaTP~~~~d~~t~-~~f~~~-fg~~i~~Y~~~~AI~dG~~~~--i~Y~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 468 (667)
T TIGR00348 394 SFFGFTGTPIFKKDRDTS-LTFAYV-FGRYLHRYFITDAIRDGLTVK--IDYEDRLPED-HLDRKKLDAFFDEIFELLPE 468 (667)
T ss_pred cEEEEeCCCccccccccc-ccccCC-CCCeEEEeeHHHHhhcCCeee--EEEEecchhh-ccChHHHHHHHHHHHHhhhc
Confidence 99999999732 222 222210 0001111011000 0111111 1110000000 00000000000000000000
Q ss_pred --CCccccc-------------cChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCC---cEEEE
Q 004875 246 --PSMANAE-------------IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF---FKVHI 307 (726)
Q Consensus 246 --~~~~~~~-------------~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~---~~v~~ 307 (726)
....... ........+..++.+........+++.+|||.++.++..+.+.|...... .....
T Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv 548 (667)
T TIGR00348 469 RIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIV 548 (667)
T ss_pred cccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEE
Confidence 0000000 00111223334444544333223478999999999999998887654222 23344
Q ss_pred ecCCCCHH---------------------HHHHHhhccCC-Cc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCC
Q 004875 308 LHSSVDTE---------------------QALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (726)
Q Consensus 308 lh~~l~~~---------------------er~~~~~~f~~-~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~ 364 (726)
+++..+.+ ....+++.|+. +. +|+|.+|.+.||+|.|.+.+++ .|-+.
T Consensus 549 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy---------ldKpl 619 (667)
T TIGR00348 549 MTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY---------LDKPL 619 (667)
T ss_pred ecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE---------Eeccc
Confidence 44432221 12356677765 45 9999999999999999999988 45555
Q ss_pred CccccceEeecHHhHHHHcCCCCCC-CCce
Q 004875 365 KIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (726)
Q Consensus 365 ~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~ 393 (726)
.-..+ +|.+||+-|. .+|+
T Consensus 620 k~h~L----------lQai~R~nR~~~~~K 639 (667)
T TIGR00348 620 KYHGL----------LQAIARTNRIDGKDK 639 (667)
T ss_pred cccHH----------HHHHHHhccccCCCC
Confidence 44444 9999999995 5554
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.3e-14 Score=166.10 Aligned_cols=318 Identities=20% Similarity=0.193 Sum_probs=186.1
Q ss_pred CCCCcHHHHHHHHHHHHcC----CcEEEEcCCCChHhHHHHHHHH---hcCCCcEEEecchHHHHHHHHHHHHhhcCCcc
Q 004875 24 SSLPVMSLREKIVEKVLEN----RVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~~----~~vii~a~TGSGKTt~ip~~ll---e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~l 96 (726)
..+.+..-|..+++.+.+. +..++.|-||||||-.+.+.+. ..| +.+++..|---..-++..|+...+|.++
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg~~v 273 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFGAKV 273 (730)
T ss_pred cccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhCCCh
Confidence 3477889999999999765 7899999999999976666654 445 4566666655556677778877777655
Q ss_pred CCeeeee---ec---cccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHH----HHHHHHHhc
Q 004875 97 GGEVGYH---IG---HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL----VCVKQLLLK 166 (726)
Q Consensus 97 g~~Vgy~---v~---~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll----~~lk~l~~~ 166 (726)
+..-... .+ +....+...+|+++|---+. ..+.+.++|||||-|+-+...+-.. --+..+...
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH
Confidence 4321111 01 12233578899999965442 2455999999999997443322110 011222333
Q ss_pred CCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCC
Q 004875 167 KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (726)
Q Consensus 167 ~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 246 (726)
..+..+|+-|||+..+.+...-.+ ....+....+.. +..+.++..++ ++.+..
T Consensus 347 ~~~~pvvLgSATPSLES~~~~~~g-----~y~~~~L~~R~~-~a~~p~v~iiD-----------mr~e~~---------- 399 (730)
T COG1198 347 KENAPVVLGSATPSLESYANAESG-----KYKLLRLTNRAG-RARLPRVEIID-----------MRKEPL---------- 399 (730)
T ss_pred HhCCCEEEecCCCCHHHHHhhhcC-----ceEEEEcccccc-ccCCCcceEEe-----------cccccc----------
Confidence 457899999999987777666332 112222222211 11011111100 000000
Q ss_pred CccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHH---------------------------------------
Q 004875 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY--------------------------------------- 287 (726)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~--------------------------------------- 287 (726)
..+...... ++..|.+.... +.++|+|+|.+.
T Consensus 400 -~~~~~lS~~-------Ll~~i~~~l~~-geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~ 470 (730)
T COG1198 400 -ETGRSLSPA-------LLEAIRKTLER-GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGY 470 (730)
T ss_pred -ccCccCCHH-------HHHHHHHHHhc-CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCC
Confidence 000002222 22222222111 245666666543
Q ss_pred ---------------------HHHHHHHHhcCCCCCcEEEEecCCCCHHH--HHHHhhccCCCc-EEEEEcccccccccC
Q 004875 288 ---------------------ALEQQWHLMKPLSSFFKVHILHSSVDTEQ--ALMAMKICKSHR-KVILATNIAESSVTI 343 (726)
Q Consensus 288 ---------------------~i~~l~~~L~~~~~~~~v~~lh~~l~~~e--r~~~~~~f~~~r-kVlvaTniae~GIdi 343 (726)
.++++.+.|....++..++.+.++..... -...+..|.+|. .|||.|.+++.|.|+
T Consensus 471 ~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~f 550 (730)
T COG1198 471 QEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDF 550 (730)
T ss_pred CCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCc
Confidence 24455555555556677888887765432 345678898888 999999999999999
Q ss_pred CCeeEEE----eCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEE
Q 004875 344 PKVAYVI----DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVY 395 (726)
Q Consensus 344 p~v~~VI----d~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~ 395 (726)
|+++.|. |+|+.. -|.+..-. .-.-+.|=+|||||. .+|.++
T Consensus 551 p~vtLVgvl~aD~~L~~---~DfRA~Er-------~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 551 PNVTLVGVLDADTGLGS---PDFRASER-------TFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred ccceEEEEEechhhhcC---CCcchHHH-------HHHHHHHHHhhhccCCCCCeEE
Confidence 9999875 444422 12222222 224558999999999 788755
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=1.4e-14 Score=166.71 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEcccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIA 337 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTnia 337 (726)
+..+.+-+..++.. +.++||||.+.+..+.++..|.. .++....+|+..+..++..+.+.|+.|. |+||||+|
T Consensus 435 ~~Aii~ei~~~~~~----GrpVLV~t~sv~~se~ls~~L~~--~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-VtIATnmA 507 (908)
T PRK13107 435 YQAIIKDIKDCRER----GQPVLVGTVSIEQSELLARLMVK--EKIPHEVLNAKFHEREAEIVAQAGRTGA-VTIATNMA 507 (908)
T ss_pred HHHHHHHHHHHHHc----CCCEEEEeCcHHHHHHHHHHHHH--CCCCeEeccCcccHHHHHHHHhCCCCCc-EEEecCCc
Confidence 34444445555543 46999999999999999999985 4588889999999999999999998876 99999999
Q ss_pred cccccCC
Q 004875 338 ESSVTIP 344 (726)
Q Consensus 338 e~GIdip 344 (726)
++|+||.
T Consensus 508 GRGTDIk 514 (908)
T PRK13107 508 GRGTDIV 514 (908)
T ss_pred CCCccee
Confidence 9999985
No 114
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.60 E-value=1e-14 Score=145.96 Aligned_cols=152 Identities=23% Similarity=0.260 Sum_probs=104.9
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH----hc---CCCcEEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll----e~---~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
++++|.++++.+.+++++++++|||+|||..+...++ .. ...+++++.|++.++.+.+..+..... ..+..+
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~~~~ 100 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGK-HTNLKV 100 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCCceE
Confidence 6889999999999999999999999999966544443 22 233677777888887877766654322 122222
Q ss_pred eeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 101 GYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 101 gy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
+...+.. .....+.+|+|+|++.+++.+......+.+++++|+||+|+ ..+..+...+...+.....+.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~-~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR-MLDMGFEDQIREILKLLPKDRQTLL 179 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH-hhccChHHHHHHHHHhCCcccEEEE
Confidence 2221111 12234789999999999998887766667999999999994 3344444333333333445789999
Q ss_pred eccCCCH
Q 004875 175 MSATADI 181 (726)
Q Consensus 175 mSATl~~ 181 (726)
+|||++.
T Consensus 180 ~SAT~~~ 186 (203)
T cd00268 180 FSATMPK 186 (203)
T ss_pred EeccCCH
Confidence 9999973
No 115
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.60 E-value=9e-14 Score=165.42 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=91.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC---Cc-EEEEEcccccccccCCCeeEEEe
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS---HR-KVILATNIAESSVTIPKVAYVID 351 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~---~r-kVlvaTniae~GIdip~v~~VId 351 (726)
+.++|||+.-...+..+.+.|. ..++....+||+++.++|..+++.|.. .+ -+|++|.+++.|||+...++||.
T Consensus 487 g~KVLIFSQft~~LdiLed~L~--~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLM--YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHH--HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 4699999998888888888887 345788999999999999999999953 23 57899999999999999999999
Q ss_pred CCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCC---CceEEEeechhhH
Q 004875 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSFF 403 (726)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~~~ 403 (726)
||++.+.... .|+.||+-|.+ +=.+|+|+++...
T Consensus 565 --------yD~dWNP~~d----------~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 565 --------YDSDWNPQVD----------LQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred --------eCCCCChHHH----------HHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 9999977776 99999998883 3468999987543
No 116
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=4.9e-14 Score=162.55 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=83.6
Q ss_pred CC--cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc---CCCcEEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 26 LP--VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 26 LP--i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~---~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
-| ++++|.+++..+..++++|..++||+|||..+...++.. +...+++|++|. +|.+.++.+... ...+|-.|
T Consensus 89 ~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrE-LA~Qdae~m~~L-~k~lGLsV 166 (970)
T PRK12899 89 QQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDY-LAQRDCEWVGSV-LRWLGLTT 166 (970)
T ss_pred CCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHH-HHHHHHHHHHHH-HhhcCCeE
Confidence 46 899999999999999999999999999996666555532 223455555555 556666555432 22345455
Q ss_pred eeeeccccc----cCCCCeEEEEChHHH-HHHHHhcCCCCC-------ceeEEEEccccc
Q 004875 101 GYHIGHSKH----LSERSKIVFKTAGVL-LDEMRDRGLNAL-------KYKVIILDEVHE 148 (726)
Q Consensus 101 gy~v~~~~~----~~~~~~Iiv~T~g~L-l~~l~~~~l~l~-------~~~~VIIDEaHe 148 (726)
|..++..+. ..-.++|+|+|||.| ++.+..+.+.+. .+.++||||||.
T Consensus 167 ~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 167 GVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 554433211 112589999999999 888877644443 458999999994
No 117
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.59 E-value=1.4e-14 Score=155.02 Aligned_cols=279 Identities=17% Similarity=0.152 Sum_probs=167.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEECh
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTA 121 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~ 121 (726)
.+.+.-+|||.||||+-..+-+.+... -++.-|-|++|..++.|+.. .|..+.-..|-..++.......+..+-||.
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~aks--GvycGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~a~hvScTV 267 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSAKS--GVYCGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNPAQHVSCTV 267 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhhcc--ceecchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCcccceEEEE
Confidence 356778999999999988888776543 35667888999999998754 343332222222222211133477888888
Q ss_pred HHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCC-CceEEEeccCCCHHHHHHHHhhcCCCcceeEE
Q 004875 122 GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMSATADITKYRDYFRDLGRGERVEVL 200 (726)
Q Consensus 122 g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~-~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~ 200 (726)
+|.- + -..|++.||||++ .+-+.+-..++-+.++.... ++.+-+=-|-+ +...+....-| +.+++.
T Consensus 268 EM~s-------v-~~~yeVAViDEIQ-mm~Dp~RGwAWTrALLGl~AdEiHLCGepsvl--dlV~~i~k~TG--d~vev~ 334 (700)
T KOG0953|consen 268 EMVS-------V-NTPYEVAVIDEIQ-MMRDPSRGWAWTRALLGLAADEIHLCGEPSVL--DLVRKILKMTG--DDVEVR 334 (700)
T ss_pred EEee-------c-CCceEEEEehhHH-hhcCcccchHHHHHHHhhhhhhhhccCCchHH--HHHHHHHhhcC--CeeEEE
Confidence 8761 1 1389999999999 44444444444444432211 11111100110 11111111111 112221
Q ss_pred EecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEE
Q 004875 201 AIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSIL 280 (726)
Q Consensus 201 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iL 280 (726)
.-. .-.|-... ..++..+. +. ..|+++
T Consensus 335 ~Ye---------------------------------------Rl~pL~v~-----------~~~~~sl~-nl--k~GDCv 361 (700)
T KOG0953|consen 335 EYE---------------------------------------RLSPLVVE-----------ETALGSLS-NL--KPGDCV 361 (700)
T ss_pred eec---------------------------------------ccCcceeh-----------hhhhhhhc-cC--CCCCeE
Confidence 110 00000000 01111111 11 135665
Q ss_pred EEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC--Cc-EEEEEcccccccccCCCeeEEEeCCCcee
Q 004875 281 VFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS--HR-KVILATNIAESSVTIPKVAYVIDSCRSLQ 357 (726)
Q Consensus 281 VF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~--~r-kVlvaTniae~GIdip~v~~VId~G~~k~ 357 (726)
| +-++++|-.+...+.+.+ +..+..++|++|++.|.+.-..|.+ +. +|+||||..++|+|+ +|+-||-
T Consensus 362 V-~FSkk~I~~~k~kIE~~g-~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF------ 432 (700)
T KOG0953|consen 362 V-AFSKKDIFTVKKKIEKAG-NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIF------ 432 (700)
T ss_pred E-EeehhhHHHHHHHHHHhc-CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEE------
Confidence 5 446778888888887544 3458889999999988777677754 55 999999999999999 8888884
Q ss_pred eeecCCCCccccceEeecHHhHHHHcCCCCCC----CCceEEEeechh
Q 004875 358 VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT----CDGQVYRLVTKS 401 (726)
Q Consensus 358 ~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~----~~G~~~~L~s~~ 401 (726)
..-...+.-.+.+|+.+++.|-+|||||. ..|.+..|+.++
T Consensus 433 ---~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 433 ---YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ---eecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 33334445567889999999999999998 358888888875
No 118
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.54 E-value=1.9e-14 Score=127.02 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=64.3
Q ss_pred HHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccCCCCchHHHH
Q 004875 455 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFA 534 (726)
Q Consensus 455 ~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~~~~ 534 (726)
.|++.|+.+||||. + | ++|++|+.|+.||++|++||||+.+..+||++++++|||+|++ ..+|..|.++++..+
T Consensus 1 ~A~~~L~~Lgald~-~--~--~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~~~~~ 74 (102)
T PF04408_consen 1 KALELLKSLGALDE-N--G--NLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKEENAE 74 (102)
T ss_dssp -HHHHHHHTTSB-T-T--S---B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGHHHHH
T ss_pred CHHHHHHHCCCCCC-C--C--CcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHHHHHH
Confidence 47899999999987 3 5 6999999999999999999999999999999999999999999 558988876544332
Q ss_pred --HHhccccCCCCCcccccccchhhHHHHH
Q 004875 535 --EYTGCYFGGDGNTRLLTGRKEMVIMGNL 562 (726)
Q Consensus 535 --~~~~~~~~~~~~~~~~~~~~~~d~l~~~ 562 (726)
..+.+|..... ........+||+++|
T Consensus 75 ~~~~~~~~~~~~~--~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 75 QDNAKKKFRIKQA--RKKFSDDESDHLTLL 102 (102)
T ss_dssp H--HHHTT------------BTTBHHHHHH
T ss_pred HHHHHHHhhhhhc--ccccCCCCCCHHhcC
Confidence 23444411110 111223346888753
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.51 E-value=1.8e-12 Score=147.89 Aligned_cols=270 Identities=17% Similarity=0.213 Sum_probs=172.1
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHH---HHHhcCCCcEEEecchHHHHHHHHHHHHhhcCC--ccCCee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLAENMEPILCTQPRRFAVVAVAKMVAKGRNC--ELGGEV 100 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~---~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~--~lg~~V 100 (726)
.++|..|.-....+..|+..-|+||||.||||.... |+...+ ++++++-|+..++.|+++++...... .+...+
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~ 159 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLV 159 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 478999999999999999999999999999965443 344444 67777788888899999988764311 122233
Q ss_pred eeeecc---------ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccc---ccccccHHHHHH--------
Q 004875 101 GYHIGH---------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE---RSVESDLVLVCV-------- 160 (726)
Q Consensus 101 gy~v~~---------~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHe---R~~~~d~ll~~l-------- 160 (726)
+|+-.. +...+.+.+|+++|.+.|...+..- .-.++++|++|++|- .+-+.|-++.++
T Consensus 160 ~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~ 237 (1187)
T COG1110 160 VYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIE 237 (1187)
T ss_pred eeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHH
Confidence 344221 1122567899999999998766531 113899999999993 233444333322
Q ss_pred --------HH-------------H---------HhcCCCceEEEeccCCCHH-----HHHHHHhhcCCCcceeEEEecCC
Q 004875 161 --------KQ-------------L---------LLKKNDLRVVLMSATADIT-----KYRDYFRDLGRGERVEVLAIPST 205 (726)
Q Consensus 161 --------k~-------------l---------~~~~~~lklIlmSATl~~~-----~~~~~f~~~~~~~~~~v~~~~~~ 205 (726)
+. . ..+...-.+|++|||..+. .|.+.++. ++ +.
T Consensus 238 ~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF-------ev----G~ 306 (1187)
T COG1110 238 SAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF-------EV----GS 306 (1187)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC-------cc----Cc
Confidence 00 0 0122345799999997432 23333321 00 00
Q ss_pred CccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCc
Q 004875 206 NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPT 285 (726)
Q Consensus 206 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~ 285 (726)
. ..++..+. +........+.+.+++.. .. ...|||+|.
T Consensus 307 ~--------~~~LRNIv---------------------------D~y~~~~~~e~~~elvk~----lG---~GgLIfV~~ 344 (1187)
T COG1110 307 G--------GEGLRNIV---------------------------DIYVESESLEKVVELVKK----LG---DGGLIFVPI 344 (1187)
T ss_pred c--------chhhhhee---------------------------eeeccCccHHHHHHHHHH----hC---CCeEEEEEc
Confidence 0 00111110 111111111222233332 22 356999999
Q ss_pred ---HHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEc----ccccccccCC-CeeEEEeCCCce
Q 004875 286 ---YYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT----NIAESSVTIP-KVAYVIDSCRSL 356 (726)
Q Consensus 286 ---~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaT----niae~GIdip-~v~~VId~G~~k 356 (726)
++.++++++.|+. .++.+..+|+.- ...++.|..|. .|+|.. +++-+|||+| -++|+|-.|.+|
T Consensus 345 d~G~e~aeel~e~Lr~--~Gi~a~~~~a~~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 345 DYGREKAEELAEYLRS--HGINAELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred HHhHHHHHHHHHHHHh--cCceEEEeeccc-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 8889999999994 558999988832 45678999998 999865 6899999999 789999989886
Q ss_pred ee
Q 004875 357 QV 358 (726)
Q Consensus 357 ~~ 358 (726)
.+
T Consensus 418 ~r 419 (1187)
T COG1110 418 FR 419 (1187)
T ss_pred ee
Confidence 54
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.48 E-value=1.5e-11 Score=148.12 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc
Q 004875 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (726)
Q Consensus 259 ~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~--~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn 335 (726)
+.+.+.+..+.... +|++|||+++.+..+.+++.|... ..++.+.. .+.. ..|.++++.|+.+. .|+++|+
T Consensus 660 ~~ia~~i~~l~~~~---~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~ 733 (850)
T TIGR01407 660 QEIASYIIEITAIT---SPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTS 733 (850)
T ss_pred HHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcc
Confidence 34444454544433 379999999999999999998742 22333333 2222 45777889998776 9999999
Q ss_pred cccccccCCCee--EEEeCCCceeeeecCCCC--------------ccccceE--eecHHhHHHHcCCCCCC--CCceEE
Q 004875 336 IAESSVTIPKVA--YVIDSCRSLQVFWDVNRK--------------IDSAELV--WVSQSQAEQRRGRTGRT--CDGQVY 395 (726)
Q Consensus 336 iae~GIdip~v~--~VId~G~~k~~~yd~~~~--------------~~~l~~~--~iS~a~~~QR~GRaGR~--~~G~~~ 395 (726)
.+.+|||+|+.. .||-.|++- .++.. -+.+... |-.--.+.|-+||.=|. ..|.++
T Consensus 734 sf~EGVD~~g~~l~~viI~~LPf----~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 734 SFWEGVDFPGNGLVCLVIPRLPF----ANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred eeecccccCCCceEEEEEeCCCC----CCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 999999999655 566667652 22221 0111111 11223468999999998 347666
Q ss_pred Ee
Q 004875 396 RL 397 (726)
Q Consensus 396 ~L 397 (726)
.|
T Consensus 810 il 811 (850)
T TIGR01407 810 IL 811 (850)
T ss_pred EE
Confidence 55
No 121
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.47 E-value=1.6e-13 Score=144.93 Aligned_cols=315 Identities=17% Similarity=0.225 Sum_probs=175.1
Q ss_pred CcHHHHHHHHHHHHcC---CcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 27 PVMSLREKIVEKVLEN---RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~---~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
-+.+||++.+..+..| +.-||+.|-|+|||..-.-.. -...+.++|.....+.+.+....+.......-.+.+-+.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 3579999999999865 577999999999993211110 011234555555555566655554443333222222222
Q ss_pred eccccccCCCCeEEEEChHHHHHH---------HHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 104 IGHSKHLSERSKIVFKTAGVLLDE---------MRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 104 v~~~~~~~~~~~Iiv~T~g~Ll~~---------l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
-...+....++.|+|+|..|+..- +. +.+.-..++++|+||+| .+- ..+.++++..-..---++
T Consensus 381 sd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m-~~l~~~EWGllllDEVH--vvP----A~MFRRVlsiv~aHcKLG 453 (776)
T KOG1123|consen 381 SDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIM-DFLRGREWGLLLLDEVH--VVP----AKMFRRVLSIVQAHCKLG 453 (776)
T ss_pred ccccccCCCCCcEEEEeeehhhhcccccHHHHHHH-HHHhcCeeeeEEeehhc--cch----HHHHHHHHHHHHHHhhcc
Confidence 122233456788999998877421 11 11122389999999999 222 233344433221122478
Q ss_pred eccCC--CHHHHHH-------------HHhhcCCCcceeEEEecCCCccceeec-eehhHHHHHHHhccCCCCccccccc
Q 004875 175 MSATA--DITKYRD-------------YFRDLGRGERVEVLAIPSTNQRTIFQR-RVSYLEQVTELLGVDHGMTSELSSL 238 (726)
Q Consensus 175 mSATl--~~~~~~~-------------~f~~~~~~~~~~v~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~ 238 (726)
++||+ ..+++.+ |......++-..|--.. -..|. ..+|-+-..+- ......
T Consensus 454 LTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaE-----VWCpMt~eFy~eYL~~~--------t~kr~l 520 (776)
T KOG1123|consen 454 LTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAE-----VWCPMTPEFYREYLREN--------TRKRML 520 (776)
T ss_pred ceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeee-----eecCCCHHHHHHHHhhh--------hhhhhe
Confidence 89996 2223222 22111111111110000 00010 01121111100 000011
Q ss_pred cccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHH
Q 004875 239 RYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQAL 318 (726)
Q Consensus 239 ~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~ 318 (726)
.|..+|. .+.. .+.+...|... +.+||||..+.-.....+-.|.+ -.++|..++.||.
T Consensus 521 LyvMNP~-----------KFra-CqfLI~~HE~R---gDKiIVFsDnvfALk~YAikl~K-------pfIYG~Tsq~ERm 578 (776)
T KOG1123|consen 521 LYVMNPN-----------KFRA-CQFLIKFHERR---GDKIIVFSDNVFALKEYAIKLGK-------PFIYGPTSQNERM 578 (776)
T ss_pred eeecCcc-----------hhHH-HHHHHHHHHhc---CCeEEEEeccHHHHHHHHHHcCC-------ceEECCCchhHHH
Confidence 1222221 2222 34444555543 35999999998887777766652 2578999999999
Q ss_pred HHhhccCCCc--EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCC-----
Q 004875 319 MAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD----- 391 (726)
Q Consensus 319 ~~~~~f~~~r--kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~----- 391 (726)
++++.|+-.. +-|+-.-++.+|||+|..++.|+ .....+ |+.+-.||.||.-|...
T Consensus 579 ~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQ--------ISSH~G---------SRRQEAQRLGRILRAKk~~de~ 641 (776)
T KOG1123|consen 579 KILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSHGG---------SRRQEAQRLGRILRAKKRNDEE 641 (776)
T ss_pred HHHHhcccCCccceEEEeeccCccccCCcccEEEE--------Eccccc---------chHHHHHHHHHHHHHhhcCccc
Confidence 9999997554 77888899999999999999997 332222 55666899999888732
Q ss_pred --ceEEEeechh
Q 004875 392 --GQVYRLVTKS 401 (726)
Q Consensus 392 --G~~~~L~s~~ 401 (726)
...|.|++++
T Consensus 642 fnafFYSLVS~D 653 (776)
T KOG1123|consen 642 FNAFFYSLVSKD 653 (776)
T ss_pred cceeeeeeeecc
Confidence 2456666654
No 122
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.46 E-value=9.4e-13 Score=122.12 Aligned_cols=134 Identities=33% Similarity=0.379 Sum_probs=95.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC----CCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecccccc------CC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHL------SE 112 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~----~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~------~~ 112 (726)
+++++.|+||+|||+++..++.+.. .++++++.|+..++.+....+...... +..+.+..+..... ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 4689999999999988877776543 368999999999998888887775542 33455544433322 46
Q ss_pred CCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 113 ~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
...|+++|++.+.+.+.........+++|||||+|. .....................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999988776543445899999999993 333332222223334445678999999995
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.45 E-value=1.8e-12 Score=127.85 Aligned_cols=155 Identities=25% Similarity=0.233 Sum_probs=105.6
Q ss_pred CCCcHHHHHHHHHHHHcC-CcEEEEcCCCChHhHHHHHHHHhcCC----CcEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 25 SLPVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAENM----EPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~-~~vii~a~TGSGKTt~ip~~lle~~~----~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
..+++++|.++++.+.+. +++++.|+||||||+.+..++++... ..++++.|++.++.+...++........+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 356789999999999988 99999999999999877777766433 4688888888777778777766543211111
Q ss_pred eeeeeccc-----c-ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEE
Q 004875 100 VGYHIGHS-----K-HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (726)
Q Consensus 100 Vgy~v~~~-----~-~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklI 173 (726)
.....+.. . ......+++++|++.+.+.+........+++++||||+|..... .....+...+....+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEE
Confidence 11111111 1 12233399999999999988875545558999999999954421 22222222222224678999
Q ss_pred EeccCCC
Q 004875 174 LMSATAD 180 (726)
Q Consensus 174 lmSATl~ 180 (726)
++|||+.
T Consensus 165 ~~saT~~ 171 (201)
T smart00487 165 LLSATPP 171 (201)
T ss_pred EEecCCc
Confidence 9999984
No 124
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.40 E-value=8.5e-13 Score=114.38 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=67.4
Q ss_pred HHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhccc-CCHHHHHHHHHHhccCCCcccCCCCchHHH
Q 004875 455 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI-GMLREGILLGILMDTQPLPILHPFGDDALF 533 (726)
Q Consensus 455 ~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~~-~c~~e~l~i~a~ls~~~~~~~~p~~~~~~~ 533 (726)
.|++.|..+||||. + | ++|++|+.|++||++|++||||+.+..+ +|..++++|+|++++.+ +|..| ......
T Consensus 1 ~A~~~L~~LgAld~-~--~--~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~-~~~~~-~~~~~~ 73 (92)
T smart00847 1 AALELLYELGALDD-D--G--RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGD-PFPRP-EKRAEA 73 (92)
T ss_pred CHHHHHHHCCCcCC-C--C--CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCC-CcCCc-hHHHHH
Confidence 37899999999987 3 6 6999999999999999999999999999 89999999999999875 66666 333344
Q ss_pred HHHhccccCC
Q 004875 534 AEYTGCYFGG 543 (726)
Q Consensus 534 ~~~~~~~~~~ 543 (726)
...+..|..+
T Consensus 74 ~~~~~~~~~~ 83 (92)
T smart00847 74 DAARRRFASG 83 (92)
T ss_pred HHHHHHccCC
Confidence 4555556544
No 125
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.39 E-value=1.8e-12 Score=119.55 Aligned_cols=101 Identities=27% Similarity=0.407 Sum_probs=89.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
++++|||+++...++.+++.|.. .+..+..+||+++..+|..+++.|.++. +|+++|+.+++|+|+|++++||.
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~--- 102 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK--PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVIN--- 102 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE---
Confidence 47999999999999999999985 4578999999999999999999999888 99999999999999999999997
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCCC-CceEEE
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYR 396 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~-~G~~~~ 396 (726)
++++.+ ...+.|++||+||.+ .|.|+.
T Consensus 103 -----~~~~~~----------~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 103 -----YDLPWS----------PSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred -----eCCCCC----------HHHheecccccccCCCCceEEe
Confidence 676554 445599999999994 788765
No 126
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.36 E-value=2.4e-12 Score=148.84 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=100.1
Q ss_pred HHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccc
Q 004875 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSV 341 (726)
Q Consensus 263 ~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GI 341 (726)
.++..+...... +.++|||+++++.++.+++.|... ++.+..+||+++..+|.++++.|+.|. .|+|||+++++|+
T Consensus 430 ~Ll~eI~~~~~~-g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 430 DLLSEIRQRVAR-NERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred HHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 444444433222 468999999999999999999854 588999999999999999999999998 9999999999999
Q ss_pred cCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechh
Q 004875 342 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (726)
Q Consensus 342 dip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~ 401 (726)
|+|++++||. +|...- ..|-|..++.||+|||||..+|+|+.++++.
T Consensus 507 DiP~v~lVvi--------~Dadif-----G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 507 DLPEVSLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred eeCCCcEEEE--------eCcccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 9999999997 663220 1122556779999999999999999888753
No 127
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.36 E-value=1.6e-10 Score=134.91 Aligned_cols=250 Identities=18% Similarity=0.149 Sum_probs=129.4
Q ss_pred CeEEEEChHHHHHHHHh--cCCC-----CCceeEEEEcccccccccccHHHHHHHHHHh--cCCCceEEEeccCCCHHHH
Q 004875 114 SKIVFKTAGVLLDEMRD--RGLN-----ALKYKVIILDEVHERSVESDLVLVCVKQLLL--KKNDLRVVLMSATADITKY 184 (726)
Q Consensus 114 ~~Iiv~T~g~Ll~~l~~--~~l~-----l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~--~~~~lklIlmSATl~~~~~ 184 (726)
..++|||+..++..... .+.. -..-++|||||+|-. + ...+.++..++. ..-..++|+||||+++...
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY--D-~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY--E-PEDLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC--C-HHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 57999999998876532 1111 115689999999932 2 233344444443 2346789999999987655
Q ss_pred HHHHhhc-----------CCC-cceeE--EEecCC--Cccce-----e-eceehhHHHHHHHhccCCCCccccccccccC
Q 004875 185 RDYFRDL-----------GRG-ERVEV--LAIPST--NQRTI-----F-QRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (726)
Q Consensus 185 ~~~f~~~-----------~~~-~~~~v--~~~~~~--~~~~~-----~-~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~ 242 (726)
..++.-. |.+ .++.+ ..+... ..... | .....|+......+.-....+. .....
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~----a~i~~ 715 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRL----AELLS 715 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccce----EEEee
Confidence 5544322 211 11111 111110 00000 0 0111233333333321000000 00001
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhhCCC----CCCcE---EEEcCcHHHHHHHHHHhcC----CCCCcEEEEecCC
Q 004875 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESD----IEKSI---LVFLPTYYALEQQWHLMKP----LSSFFKVHILHSS 311 (726)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~----~~~~i---LVF~~~~~~i~~l~~~L~~----~~~~~~v~~lh~~ 311 (726)
.+.+..........+.+.+.+.+..+|..... .+++| ||=+++...+-.++..|.. .+..+.+..+||.
T Consensus 716 ~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr 795 (1110)
T TIGR02562 716 LSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQ 795 (1110)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEeccc
Confidence 11111111122234455566666666654221 12222 5666666666666666543 2334567889999
Q ss_pred CCHHHHHHHhhcc--------------------------CCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCC
Q 004875 312 VDTEQALMAMKIC--------------------------KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (726)
Q Consensus 312 l~~~er~~~~~~f--------------------------~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~ 364 (726)
.+...|..+++.. ..+. .|+|||.+.|.|+|+ |.+++|- -+.
T Consensus 796 ~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~----------~~~ 864 (1110)
T TIGR02562 796 DPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA----------DPS 864 (1110)
T ss_pred ChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee----------ccC
Confidence 8766655543221 1134 899999999999999 5556551 244
Q ss_pred CccccceEeecHHhHHHHcCCCCCCCC
Q 004875 365 KIDSAELVWVSQSQAEQRRGRTGRTCD 391 (726)
Q Consensus 365 ~~~~l~~~~iS~a~~~QR~GRaGR~~~ 391 (726)
+++++ +||+||+.|.+.
T Consensus 865 ~~~sl----------iQ~aGR~~R~~~ 881 (1110)
T TIGR02562 865 SMRSI----------IQLAGRVNRHRL 881 (1110)
T ss_pred cHHHH----------HHHhhccccccc
Confidence 55555 999999999854
No 128
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.33 E-value=6.6e-12 Score=122.92 Aligned_cols=148 Identities=15% Similarity=0.186 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHHHc-------CCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 26 LPVMSLREKIVEKVLE-------NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~-------~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
+.++++|.+++..+.+ ++.+++.+|||||||..+..++.+... +++++.|+..++.+....+..........
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~ 80 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-KVLIVAPNISLLEQWYDEFDDFGSEKYNF 80 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-EEEEEESSHHHHHHHHHHHHHHSTTSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-ceeEecCHHHHHHHHHHHHHHhhhhhhhh
Confidence 4678999999999984 689999999999999777766655544 77777788877777777663222111000
Q ss_pred ------------e----eeeeeccccccCCCCeEEEEChHHHHHHHHhcC-----------CCCCceeEEEEcccccccc
Q 004875 99 ------------E----VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRG-----------LNALKYKVIILDEVHERSV 151 (726)
Q Consensus 99 ------------~----Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-----------l~l~~~~~VIIDEaHeR~~ 151 (726)
. ...............++.+.|.+.+........ .....+++||+||||+ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~-~~ 159 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH-YP 159 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC-TH
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh-cC
Confidence 0 000000111224567899999999987764311 1123789999999994 33
Q ss_pred cccHHHHHHHHHHhcCCCceEEEeccCCC
Q 004875 152 ESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (726)
Q Consensus 152 ~~d~ll~~lk~l~~~~~~lklIlmSATl~ 180 (726)
...- .+.+.. .+...+|+||||+.
T Consensus 160 ~~~~----~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 160 SDSS----YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp HHHH----HHHHHH-SSCCEEEEEESS-S
T ss_pred CHHH----HHHHHc-CCCCeEEEEEeCcc
Confidence 3322 233333 56778999999974
No 129
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.32 E-value=1.1e-12 Score=109.98 Aligned_cols=71 Identities=30% Similarity=0.419 Sum_probs=64.5
Q ss_pred CCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhH
Q 004875 301 SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQA 379 (726)
Q Consensus 301 ~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~ 379 (726)
.++.+..+||+++.++|..+++.|+.+. +|||||+++++|||+|++++||. |+++. |..++
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~~~~----------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YDPPW----------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SSSES----------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cccCC----------CHHHH
Confidence 4588999999999999999999999988 99999999999999999999999 77765 45556
Q ss_pred HHHcCCCCCC
Q 004875 380 EQRRGRTGRT 389 (726)
Q Consensus 380 ~QR~GRaGR~ 389 (726)
.||+||+||.
T Consensus 68 ~Q~~GR~~R~ 77 (78)
T PF00271_consen 68 IQRIGRAGRI 77 (78)
T ss_dssp HHHHTTSSTT
T ss_pred HHHhhcCCCC
Confidence 9999999996
No 130
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.31 E-value=8.4e-12 Score=145.30 Aligned_cols=110 Identities=25% Similarity=0.307 Sum_probs=95.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
+.++||||+++..++.+++.|... ++.+..+||+++..+|..+++.|+.|. .|+|||+++++|+|+|++++||.
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~--gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii--- 520 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI--- 520 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhc--ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEE---
Confidence 468999999999999999999854 588999999999999999999999988 99999999999999999999998
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeech
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 400 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~ 400 (726)
+|.+.. ..|-|..+|.||+||+||...|+|+.+++.
T Consensus 521 -----~d~eif-----G~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 521 -----LDADKE-----GFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred -----eCCccc-----ccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 654320 112356677999999999999999999884
No 131
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=9e-12 Score=144.44 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=87.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCC---CeeEE--
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIP---KVAYV-- 349 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip---~v~~V-- 349 (726)
+.++||||++.+..+.+++.|... ++....+|+ .+.+|...+..|+++. .|+||||+|++|+||+ +|..|
T Consensus 598 grpVLIft~Sve~sE~Ls~~L~~~--gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGG 673 (1025)
T PRK12900 598 GQPVLVGTASVEVSETLSRMLRAK--RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGG 673 (1025)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHc--CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCC
Confidence 369999999999999999999854 477888897 5778888899999998 9999999999999999 55433
Q ss_pred ---EeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 350 ---IDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 350 ---Id~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
|. ++.+. |+..+.||+|||||. .||.+..+++.++.
T Consensus 674 L~VIg--------terhe----------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 674 LFILG--------SERHE----------SRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred ceeeC--------CCCCc----------hHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 55 44444 344459999999999 78999999987543
No 132
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.26 E-value=1.2e-10 Score=124.96 Aligned_cols=304 Identities=12% Similarity=0.060 Sum_probs=174.3
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHH----HHHH-hcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVP----QFLL-AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip----~~ll-e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
--+++|.+++..+-+|+++++.-.|.+||++... .+++ ......++.. |....++. ..-|..|-
T Consensus 286 ~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~-~~~~~~~~----------~~~~~~V~ 354 (1034)
T KOG4150|consen 286 SGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPS-EMVEHLRN----------GSKGQVVH 354 (1034)
T ss_pred chhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecch-hHHHHhhc----------cCCceEEE
Confidence 3478999999999999999999999999994321 1111 1111122222 22111111 00111110
Q ss_pred ee---------eccccc---------cCCCCeEEEEChHHHHHHHHhcCCC----CCceeEEEEccccccccccc-HHHH
Q 004875 102 YH---------IGHSKH---------LSERSKIVFKTAGVLLDEMRDRGLN----ALKYKVIILDEVHERSVESD-LVLV 158 (726)
Q Consensus 102 y~---------v~~~~~---------~~~~~~Iiv~T~g~Ll~~l~~~~l~----l~~~~~VIIDEaHeR~~~~d-~ll~ 158 (726)
.. |...+. ...+.+++|..+.+.......+.+. +....++++||+|-...-+. ....
T Consensus 355 ~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 355 VEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred EEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 00 011111 1345789999998887766544322 12556789999994322221 1122
Q ss_pred HHHHHHh------cCCCceEEEeccCC--CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCC
Q 004875 159 CVKQLLL------KKNDLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHG 230 (726)
Q Consensus 159 ~lk~l~~------~~~~lklIlmSATl--~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 230 (726)
.++.+.. ...+++++-.|||+ .....++.|+. ..++.+.+.+.+.+...-+-
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~----~E~~Li~~DGSPs~~K~~V~---------------- 494 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANL----SELELVTIDGSPSSEKLFVL---------------- 494 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCC----cceEEEEecCCCCccceEEE----------------
Confidence 2333322 24679999999997 33445555553 34666666665433221110
Q ss_pred CccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC----CCCC--cE
Q 004875 231 MTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP----LSSF--FK 304 (726)
Q Consensus 231 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~----~~~~--~~ 304 (726)
|.....|. ....-...+.+ ...++..+..+ +-++|.||+.++-|+-+....+. .++. -.
T Consensus 495 ---------WNP~~~P~-~~~~~~~~i~E-~s~~~~~~i~~----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~ 559 (1034)
T KOG4150|consen 495 ---------WNPSAPPT-SKSEKSSKVVE-VSHLFAEMVQH----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEA 559 (1034)
T ss_pred ---------eCCCCCCc-chhhhhhHHHH-HHHHHHHHHHc----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 00000000 00000111111 11222222222 24889999999988865544332 1221 13
Q ss_pred EEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHc
Q 004875 305 VHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (726)
Q Consensus 305 v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~ 383 (726)
+..+.|+-..++|.++....-+|. +-|||||.+|-||||.+.+.|+.+|++ .|-+++.|..
T Consensus 560 i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP------------------~S~aNl~QQ~ 621 (1034)
T KOG4150|consen 560 ITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFP------------------GSIANLWQQA 621 (1034)
T ss_pred HHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCc------------------hhHHHHHHHh
Confidence 556779999999999987655566 999999999999999999999998873 2677889999
Q ss_pred CCCCCC-CCceE
Q 004875 384 GRTGRT-CDGQV 394 (726)
Q Consensus 384 GRaGR~-~~G~~ 394 (726)
|||||. .+...
T Consensus 622 GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 622 GRAGRRNKPSLA 633 (1034)
T ss_pred ccccccCCCceE
Confidence 999998 55543
No 133
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=2.6e-10 Score=129.04 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
.+.+.+-+...+.. +.+|||.+.+.+..+.+++.|.+.+ +....|++.-...|...+-++ +.. .|.||||+
T Consensus 413 ~~Aii~ei~~~~~~----GrPVLVgt~sI~~SE~ls~~L~~~g--I~h~vLNAk~~~~EA~IIa~A--G~~gaVTIATNM 484 (764)
T PRK12326 413 NDAIVEHIAEVHET----GQPVLVGTHDVAESEELAERLRAAG--VPAVVLNAKNDAEEARIIAEA--GKYGAVTVSTQM 484 (764)
T ss_pred HHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhCC--CcceeeccCchHhHHHHHHhc--CCCCcEEEEecC
Confidence 33444444444432 4699999999999999999998544 566667765444443333232 223 89999999
Q ss_pred ccccccCC---------------CeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeech
Q 004875 337 AESSVTIP---------------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (726)
Q Consensus 337 ae~GIdip---------------~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~ 400 (726)
|++|.||. |=-+||-+.++. |+--=.|-.|||||. .||.+-.+.|-
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe------------------SrRID~QLrGRaGRQGDpGss~f~lSl 546 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR------------------SERLDNQLRGRAGRQGDPGSSVFFVSL 546 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCc------------------hHHHHHHHhcccccCCCCCceeEEEEc
Confidence 99999985 223455433322 222338999999999 68986666653
No 134
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.22 E-value=2.6e-09 Score=118.96 Aligned_cols=346 Identities=17% Similarity=0.235 Sum_probs=190.5
Q ss_pred CcHHHHHHHHHHHH----cCCcEEEEcCCCChHhHHHHHH---HHh-cC-CCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 27 PVMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQF---LLA-EN-MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 27 Pi~~~Q~~il~~i~----~~~~vii~a~TGSGKTt~ip~~---lle-~~-~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.+.+||-+-+..+. ++-+.|+.-+-|-|||.|-..+ +.. .+ .+.-+|+.|...+.. ....+++.. +--
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~--P~l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFT--PSL 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhC--CCc
Confidence 45688888776653 5668999999999999664443 333 22 346666667433321 111122211 111
Q ss_pred Ceeeeeecc--------ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHH-HHHHHHhcCC
Q 004875 98 GEVGYHIGH--------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLV-CVKQLLLKKN 168 (726)
Q Consensus 98 ~~Vgy~v~~--------~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~-~lk~l~~~~~ 168 (726)
..+-|.-.. +-......+|+++|.++.++.-. .+.-..++++|||||| |.-+..-.+. .++.+. .
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f~---~ 317 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAH-RIKNEKSKLSKILREFK---T 317 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhh-hhcchhhHHHHHHHHhc---c
Confidence 223333111 11123478999999999988622 1222389999999999 8877655443 333332 2
Q ss_pred CceEEEeccCC---------------------CHHHHHHHHhhcC---CCcce-----------------eEE-EecCCC
Q 004875 169 DLRVVLMSATA---------------------DITKYRDYFRDLG---RGERV-----------------EVL-AIPSTN 206 (726)
Q Consensus 169 ~lklIlmSATl---------------------~~~~~~~~f~~~~---~~~~~-----------------~v~-~~~~~~ 206 (726)
+ .-++++.|+ +.+.|.+||..-. ....+ .|. ..|...
T Consensus 318 ~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKk 396 (971)
T KOG0385|consen 318 D-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKK 396 (971)
T ss_pred c-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcc
Confidence 2 345567773 2467778886521 00000 000 001000
Q ss_pred ccceee-----ceehhHHHHHHHhccCCCCcc-c---c----------cccccc-CCCCC---CccccccCh--hHHHHH
Q 004875 207 QRTIFQ-----RRVSYLEQVTELLGVDHGMTS-E---L----------SSLRYC-SGPSP---SMANAEIKP--EVHKLI 261 (726)
Q Consensus 207 ~~~~~~-----~~~~yl~~~~~~~~~~~~~~~-~---~----------~~~~y~-~~~~~---~~~~~~~~~--~~~~li 261 (726)
....|. .+.+|-.-....+..-.+... + . ....|. .+..| ...+..+-. -..-++
T Consensus 397 E~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 397 ELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred eeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehH
Confidence 000000 001111111111100000000 0 0 001111 11111 111111000 001223
Q ss_pred HHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC---c-EEEEEcccc
Q 004875 262 HDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH---R-KVILATNIA 337 (726)
Q Consensus 262 ~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~---r-kVlvaTnia 337 (726)
..++..+.. .+.+||||..-..-.+-+.++.. ..++...-+.|+++.++|...++.|... . -.+++|-..
T Consensus 477 DkLL~~Lk~----~GhRVLIFSQmt~mLDILeDyc~--~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG 550 (971)
T KOG0385|consen 477 DKLLPKLKE----QGHRVLIFSQMTRMLDILEDYCM--LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG 550 (971)
T ss_pred HHHHHHHHh----CCCeEEEeHHHHHHHHHHHHHHH--hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccc
Confidence 344444433 24699999766555555555544 3568899999999999999999998532 3 578899999
Q ss_pred cccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 338 ESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 338 e~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
+-|||+-..+.||- ||...+...- -+|.+|+-|.|-..+=++|||+++...
T Consensus 551 GLGINL~aADtVIl--------yDSDWNPQ~D-------LQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 551 GLGINLTAADTVIL--------YDSDWNPQVD-------LQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred ccccccccccEEEE--------ecCCCCchhh-------hHHHHHHHhhCCcCceEEEEEeccchH
Confidence 99999999999998 8888776543 577889999999999999999997644
No 135
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.21 E-value=4e-09 Score=118.05 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc---EEEEEc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILAT 334 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r---kVlvaT 334 (726)
.+.+..++...++ . +.++|+|..++..+.-+...|.. ..++....+.|..+...|...++.|.... -.|++|
T Consensus 532 m~vl~~ll~~W~k-q---g~rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 532 MKVLAKLLKDWKK-Q---GDRVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred HHHHHHHHHHHhh-C---CCEEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 3444444443333 2 25999999999988888888874 35699999999999999999999998665 567899
Q ss_pred ccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 335 niae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
-+.+-|+|+-+.+-||- |||..+...- .+|.-|+-|-|-...=.+|||.+....
T Consensus 607 rvGGLGlNLTgAnRVII--------fDPdWNPStD-------~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVII--------FDPDWNPSTD-------NQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred cccccccccccCceEEE--------ECCCCCCccc-------hHHHHHHHhhcCccceEEEEEecCCcH
Confidence 99999999999988887 9999887655 567788888888888889999986543
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=5.3e-10 Score=129.60 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=76.6
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHH--HHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~--ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
.|-+.+|--+++-.+.=++--|....||+|||.. +|.++.......+.++.|...+|.+-+..+...+. .+|-.||.
T Consensus 78 ~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~-~lGl~v~~ 156 (913)
T PRK13103 78 VMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE-FLGLSVGI 156 (913)
T ss_pred HhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc-ccCCEEEE
Confidence 3444555555677666667779999999999943 44444444445566667777777777777766543 45666775
Q ss_pred eecccc----ccCCCCeEEEEChHHH-HHHHHhc------CCCCCceeEEEEccccc
Q 004875 103 HIGHSK----HLSERSKIVFKTAGVL-LDEMRDR------GLNALKYKVIILDEVHE 148 (726)
Q Consensus 103 ~v~~~~----~~~~~~~Iiv~T~g~L-l~~l~~~------~l~l~~~~~VIIDEaHe 148 (726)
..+... +..-..+|+|+|..-+ .+.|+.+ .....++.++||||+|-
T Consensus 157 i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 157 VTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred ECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 433211 1112489999999776 1112111 11124789999999994
No 137
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.15 E-value=1.8e-10 Score=105.30 Aligned_cols=131 Identities=19% Similarity=0.227 Sum_probs=83.7
Q ss_pred cCCcEEEEcCCCChHhHH-HHHHHHhcC--CCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccc-cccCCCCeE
Q 004875 41 ENRVTLIVGETGCGKSSQ-VPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-KHLSERSKI 116 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~-ip~~lle~~--~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~-~~~~~~~~I 116 (726)
+++..+|-..+|+|||+. +|.++.+.. ..++++..|.|..+..+.+.+... .+.+....- .....+.-|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~-------~~~~~t~~~~~~~~g~~~i 75 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL-------PVRFHTNARMRTHFGSSII 75 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS-------SEEEESTTSS----SSSSE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC-------CcccCceeeeccccCCCcc
Confidence 567789999999999974 777776542 347889999999888888766421 233332211 223466789
Q ss_pred EEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCC
Q 004875 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (726)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~ 180 (726)
-+||.+.+.+.+.+ +....+|++||+||+|--...+=...+.++..-.. ...++|.||||++
T Consensus 76 ~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 76 DVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp EEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred cccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 99999999888876 55667999999999994222222334455555333 4578999999975
No 138
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.15 E-value=8.8e-09 Score=117.74 Aligned_cols=326 Identities=17% Similarity=0.176 Sum_probs=176.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc---CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCC-CCeE
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSE-RSKI 116 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~---~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~-~~~I 116 (726)
...+.+|.+|.||||||++..++.+. ...+++++.-|+..+.+++.++.... +.+.+-|....+..... ..+-
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~~~r 124 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDGRPYDR 124 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeeccccccccccccCe
Confidence 55788999999999999999998775 34688999999999999999886531 22334444222222221 2345
Q ss_pred EEEChHHHHHHHHhcCCCCCceeEEEEcccccc--cccc------cHHHHHHHHHHhcCCCceEEEeccCCCHHHHHHHH
Q 004875 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHER--SVES------DLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYF 188 (726)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR--~~~~------d~ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f 188 (726)
++++.+.|.+... . .+.+|++|||||+-.- .+.+ .....+++.++.. .-++|+|-||++.. .-+++
T Consensus 125 LivqIdSL~R~~~-~--~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~~-tvdFl 198 (824)
T PF02399_consen 125 LIVQIDSLHRLDG-S--LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLNDQ-TVDFL 198 (824)
T ss_pred EEEEehhhhhccc-c--cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCHH-HHHHH
Confidence 5555666766432 1 2447999999999730 0111 1223344444433 34899999999854 55566
Q ss_pred hhcCCCcceeEEEec----CCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHH
Q 004875 189 RDLGRGERVEVLAIP----STNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDL 264 (726)
Q Consensus 189 ~~~~~~~~~~v~~~~----~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~l 264 (726)
..+...+++.++.-. +....+.+-....-.+.....++...+.........-...... ..........-...+
T Consensus 199 ~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 199 ASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTA---TAAISNDETTFFSEL 275 (824)
T ss_pred HHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccc---ccccccchhhHHHHH
Confidence 666545555544322 1111111111111222222233211100000000000000000 000111111111122
Q ss_pred HHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccC
Q 004875 265 VLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTI 343 (726)
Q Consensus 265 v~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdi 343 (726)
...+. .+..|-||+.|..-.+.+++..... +..|..++|.-+..+ + +. -++ +|++=|.+...|+++
T Consensus 276 ~~~L~-----~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 276 LARLN-----AGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSF 342 (824)
T ss_pred HHHHh-----CCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEecc
Confidence 22222 2367889999998888888777644 467888888665552 2 22 345 999999999999999
Q ss_pred CCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 344 PKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 344 p~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
....+=--.++.|.. ..+. +..+..|+.||.-.......|.-++....
T Consensus 343 ~~~HF~~~f~yvk~~----~~gp--------d~~s~~Q~lgRvR~l~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPM----SYGP--------DMVSVYQMLGRVRSLLDNEIYVYIDASGA 390 (824)
T ss_pred chhhceEEEEEecCC----CCCC--------cHHHHHHHHHHHHhhccCeEEEEEecccc
Confidence 754332111111111 1111 12345899999966677777777765433
No 139
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.14 E-value=8.4e-10 Score=128.03 Aligned_cols=329 Identities=12% Similarity=0.109 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHH-cCCcEEEEcCCCChHhHHHHHHHHhc-CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeee--
Q 004875 29 MSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI-- 104 (726)
Q Consensus 29 ~~~Q~~il~~i~-~~~~vii~a~TGSGKTt~ip~~lle~-~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v-- 104 (726)
.++|.++++.+. .|++|+|.+|+|||||...-..++.. ...+++...|....+...+.-+...++...|..+--..
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge 1224 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGE 1224 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCc
Confidence 455666666653 56889999999999998777777653 23478888888777777666666555444443322221
Q ss_pred -ccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccc----cHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 105 -GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES----DLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 105 -~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~----d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
..+.+.-...+|+++||+..-.. + ..+.+++.|.||.|.-+-.. ..+..+-......-+.+|++.+|..+
T Consensus 1225 ~s~~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~l 1299 (1674)
T KOG0951|consen 1225 TSLDLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSL 1299 (1674)
T ss_pred cccchHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhh
Confidence 12233456789999999987544 2 34589999999999533111 11111111111223467888888875
Q ss_pred -CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHH
Q 004875 180 -DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (726)
Q Consensus 180 -~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 258 (726)
++..+ -++.. ..+.+.+.. .+..|.++.. ...... .......
T Consensus 1300 ana~d~-ig~s~------~~v~Nf~p~--~R~~Pl~i~i----------------~~~~~~------------~~~~~~~ 1342 (1674)
T KOG0951|consen 1300 ANARDL-IGASS------SGVFNFSPS--VRPVPLEIHI----------------QSVDIS------------HFESRML 1342 (1674)
T ss_pred ccchhh-ccccc------cceeecCcc--cCCCceeEEE----------------EEeccc------------hhHHHHH
Confidence 55554 11111 111111110 0111111100 000000 0000000
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC--------------------CCCcEEEEecCCCCHHHHH
Q 004875 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--------------------SSFFKVHILHSSVDTEQAL 318 (726)
Q Consensus 259 ~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~--------------------~~~~~v~~lh~~l~~~er~ 318 (726)
....-....+.+... .+++.+||+|+++++..++..+-.. ...+....-|-+++..++.
T Consensus 1343 am~~~~~~ai~~~a~-~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~ 1421 (1674)
T KOG0951|consen 1343 AMTKPTYTAIVRHAG-NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQE 1421 (1674)
T ss_pred HhhhhHHHHHHHHhc-CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHH
Confidence 111111122222222 2468899999999988776554311 0111112228888888888
Q ss_pred HHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCC-ccccceEeecHHhHHHHcCCCCCCCCceEEE
Q 004875 319 MAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK-IDSAELVWVSQSQAEQRRGRTGRTCDGQVYR 396 (726)
Q Consensus 319 ~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~-~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~ 396 (726)
.+-..|..|+ +|+|...- -.|+-...--+|+ . ...+||.... .+.| +-+...|+.|+|.| .|+|+.
T Consensus 1422 iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-m---gt~~ydg~e~~~~~y-----~i~~ll~m~G~a~~--~~k~vi 1489 (1674)
T KOG0951|consen 1422 IVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-M---GTQYYDGKEHSYEDY-----PIAELLQMVGLASG--AGKCVI 1489 (1674)
T ss_pred HHHHHHhcCcEEEEEEEcc-cccccccceEEEE-e---cceeecccccccccC-----chhHHHHHhhhhcC--CccEEE
Confidence 8888899888 77776654 6776664333333 2 2344776542 2333 67889999999998 788888
Q ss_pred eech---hhHhhccCCCCC
Q 004875 397 LVTK---SFFGTLEDHECP 412 (726)
Q Consensus 397 L~s~---~~~~~l~~~~~p 412 (726)
+... ..|.++.....|
T Consensus 1490 ~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1490 MCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred EecCchHHHHHHhccCcCc
Confidence 8753 345666555555
No 140
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.14 E-value=1.2e-08 Score=121.71 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecC-CCCHHHHHHHhhccCCCc-EEEEEcc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHS-SVDTEQALMAMKICKSHR-KVILATN 335 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~-~l~~~er~~~~~~f~~~r-kVlvaTn 335 (726)
.+.+.+.+..+. . .+|++||+.++.+..+.+++.|... ...+ ...| +.+ +.++++.|+.+. .|+++|+
T Consensus 633 ~~~~~~~i~~~~-~---~~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~~---~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 633 AEEIAKRLEELK-Q---LQQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNGT---AYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred HHHHHHHHHHHH-h---cCCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCcc---HHHHHHHHHcCCCeEEEecc
Confidence 334444444444 2 2479999999999999999998743 2344 3333 222 344677787765 9999999
Q ss_pred cccccccCC--CeeEEEeCCCceeeeecCCCC--------------ccccceEeecH--HhHHHHcCCCCCCC--CceEE
Q 004875 336 IAESSVTIP--KVAYVIDSCRSLQVFWDVNRK--------------IDSAELVWVSQ--SQAEQRRGRTGRTC--DGQVY 395 (726)
Q Consensus 336 iae~GIdip--~v~~VId~G~~k~~~yd~~~~--------------~~~l~~~~iS~--a~~~QR~GRaGR~~--~G~~~ 395 (726)
..-+|||+| +...||-.|++ |.+|.. -+.+...-+.+ -.+.|=+||.=|.. .|.++
T Consensus 703 sFwEGVD~p~~~~~~viI~kLP----F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLP----FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 999999997 35556655655 222221 11122222222 35789999999983 58766
Q ss_pred Ee
Q 004875 396 RL 397 (726)
Q Consensus 396 ~L 397 (726)
.|
T Consensus 779 il 780 (820)
T PRK07246 779 IL 780 (820)
T ss_pred EE
Confidence 54
No 141
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.12 E-value=8.9e-11 Score=98.57 Aligned_cols=78 Identities=33% Similarity=0.449 Sum_probs=67.1
Q ss_pred HHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccc
Q 004875 292 QWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAE 370 (726)
Q Consensus 292 l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~ 370 (726)
+.+.|... ++.+..+||+++.++|..+++.|+.+. +|+++|+++++|+|+|++++||. ++++.
T Consensus 3 l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~~~~------ 66 (82)
T smart00490 3 LAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YDLPW------ 66 (82)
T ss_pred HHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eCCCC------
Confidence 44555533 588999999999999999999999888 99999999999999999999998 66644
Q ss_pred eEeecHHhHHHHcCCCCCC
Q 004875 371 LVWVSQSQAEQRRGRTGRT 389 (726)
Q Consensus 371 ~~~iS~a~~~QR~GRaGR~ 389 (726)
|..++.|++||+||.
T Consensus 67 ----~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 67 ----SPASYIQRIGRAGRA 81 (82)
T ss_pred ----CHHHHHHhhcccccC
Confidence 566679999999995
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.06 E-value=5.5e-08 Score=118.07 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCC--CcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc
Q 004875 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (726)
Q Consensus 259 ~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~--~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn 335 (726)
+.+.+.+..+.... +|++|||.++++..+.+++.|..... ++.+.. . +++...|.++++.|+.+. .|+++|+
T Consensus 738 ~~la~~i~~l~~~~---~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~ 812 (928)
T PRK08074 738 EEVAAYIAKIAKAT---KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTS 812 (928)
T ss_pred HHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecC
Confidence 44444444444333 37999999999999999999874322 233322 2 232234566778887665 9999999
Q ss_pred cccccccCCC--eeEEEeCCCceeeeecCCCC--------------ccccceE--eecHHhHHHHcCCCCCC--CCceEE
Q 004875 336 IAESSVTIPK--VAYVIDSCRSLQVFWDVNRK--------------IDSAELV--WVSQSQAEQRRGRTGRT--CDGQVY 395 (726)
Q Consensus 336 iae~GIdip~--v~~VId~G~~k~~~yd~~~~--------------~~~l~~~--~iS~a~~~QR~GRaGR~--~~G~~~ 395 (726)
...+|||+|+ .+.||-.|++ |.+|.. -+.+... |-.--.+.|-+||.=|. ..|.++
T Consensus 813 sFwEGVD~pg~~l~~viI~kLP----F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 813 SFWEGIDIPGDELSCLVIVRLP----FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred cccCccccCCCceEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 9999999995 5788877765 333321 1111111 22234568999999888 357666
Q ss_pred Ee
Q 004875 396 RL 397 (726)
Q Consensus 396 ~L 397 (726)
.|
T Consensus 889 il 890 (928)
T PRK08074 889 VL 890 (928)
T ss_pred Ee
Confidence 44
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=99.04 E-value=2.9e-09 Score=119.43 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=63.6
Q ss_pred hcCCCCCcEEEEec--CCCCHHHHHHHhh---ccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCcccc
Q 004875 296 MKPLSSFFKVHILH--SSVDTEQALMAMK---ICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSA 369 (726)
Q Consensus 296 L~~~~~~~~v~~lh--~~l~~~er~~~~~---~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l 369 (726)
|.+...++.+..-| |.|...+|.+.+. .|.... ||+-.--.+.+|||+|..+-||- ||+...+-..
T Consensus 491 lk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF--------f~pr~smVDI 562 (1518)
T COG4889 491 LKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF--------FDPRSSMVDI 562 (1518)
T ss_pred HHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE--------ecCchhHHHH
Confidence 33334455555544 8899888866543 345566 88888889999999999999998 9999977766
Q ss_pred ceEeecHHhHHHHcCCCCCCCCceEE
Q 004875 370 ELVWVSQSQAEQRRGRTGRTCDGQVY 395 (726)
Q Consensus 370 ~~~~iS~a~~~QR~GRaGR~~~G~~~ 395 (726)
+|-+||.-|..+|+-|
T Consensus 563 ----------VQaVGRVMRKa~gK~y 578 (1518)
T COG4889 563 ----------VQAVGRVMRKAKGKKY 578 (1518)
T ss_pred ----------HHHHHHHHHhCcCCcc
Confidence 9999999999888744
No 144
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=8.1e-09 Score=118.70 Aligned_cols=114 Identities=22% Similarity=0.300 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccccc
Q 004875 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAE 338 (726)
Q Consensus 260 li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae 338 (726)
.+.+-+...+.. +.+|||.+.+.+..+.++..|.+.+ +..-.|++.-...|...+-+ .+.. .|.||||+|+
T Consensus 414 Aii~ei~~~~~~----gqPVLVgT~SIe~SE~ls~~L~~~g--i~h~vLNAk~~e~EA~IIa~--AG~~GaVTIATNMAG 485 (925)
T PRK12903 414 AVVKEVKRVHKK----GQPILIGTAQVEDSETLHELLLEAN--IPHTVLNAKQNAREAEIIAK--AGQKGAITIATNMAG 485 (925)
T ss_pred HHHHHHHHHHhc----CCCEEEEeCcHHHHHHHHHHHHHCC--CCceeecccchhhHHHHHHh--CCCCCeEEEeccccc
Confidence 344444444432 4699999999999999999998544 55555666433333332222 2223 9999999999
Q ss_pred ccccCCCee--------EEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeec
Q 004875 339 SSVTIPKVA--------YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (726)
Q Consensus 339 ~GIdip~v~--------~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s 399 (726)
+|.||.--. |||-+.++. |+--=.|-.|||||. .||.+-...+
T Consensus 486 RGTDI~Lg~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 486 RGTDIKLSKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred CCcCccCchhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEe
Confidence 999996222 666533322 111227999999999 6887554444
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.02 E-value=2.2e-09 Score=123.95 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=47.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCC--CHHHHHHHhhccCCCc-EEEEEcccccccccCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSV--DTEQALMAMKICKSHR-KVILATNIAESSVTIP 344 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l--~~~er~~~~~~f~~~r-kVlvaTniae~GIdip 344 (726)
+.+|||-+.+.+..+.++..|...+ +....|++.- ...|...+-++ +.. .|.||||+|++|.||-
T Consensus 424 grPVLIgT~SIe~SE~ls~~L~~~g--i~h~vLNAk~~~~~~EA~IIA~A--G~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 424 GRPILIGTTTIEKSELLSQLLKEYR--LPHQLLNAKPENVRRESEIVAQA--GRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHHcC--CccceeeCCCccchhHHHHHHhc--CCCCcEEEeccccCCCcCee
Confidence 4699999999999999999998544 5556666642 23343333332 333 8999999999999984
No 146
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.94 E-value=2.1e-07 Score=106.94 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=79.4
Q ss_pred EEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc---E-EEEEcccccccccCCCeeEEEeCCCc
Q 004875 280 LVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---K-VILATNIAESSVTIPKVAYVIDSCRS 355 (726)
Q Consensus 280 LVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r---k-VlvaTniae~GIdip~v~~VId~G~~ 355 (726)
.|.+.......++.+.+.... ++.+..+||.++..+|..+++.|.+-. + .+.+|-..+.||++=|..-||-
T Consensus 598 ~v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil---- 672 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL---- 672 (776)
T ss_pred EEEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE----
Confidence 344555555556655555444 799999999999999999999996432 4 4567778899999998888887
Q ss_pred eeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechh
Q 004875 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (726)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~ 401 (726)
||+..+...- .+|+-|+-|-|-.++=..|||.+..
T Consensus 673 ----~D~dWNPa~d-------~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 673 ----FDPDWNPAVD-------QQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred ----eCCCCCchhH-------HHHHHHhccCCCcceEEEEEeecCC
Confidence 9999877655 4555566666666788899998854
No 147
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.92 E-value=2.7e-08 Score=116.03 Aligned_cols=113 Identities=23% Similarity=0.242 Sum_probs=91.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccC---CCc-EEEEEcccccccccCCCeeEEE
Q 004875 275 IEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK---SHR-KVILATNIAESSVTIPKVAYVI 350 (726)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~---~~r-kVlvaTniae~GIdip~v~~VI 350 (726)
++.+||||..-..-.+-++++|. ..+|..--+.|++..+.|+..+..|. +.+ -.|+||-..+-|||+-..+.||
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~--~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVI 775 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLS--LRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVI 775 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHH--HcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEE
Confidence 45799999999999999999998 45588889999999999999999884 345 8899999999999999999998
Q ss_pred eCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHh
Q 004875 351 DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (726)
Q Consensus 351 d~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~ 404 (726)
. ||...+...- -+|.-|+-|.|-...=.+|||+|+..|+
T Consensus 776 I--------FDSDWNPQND-------LQAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 776 I--------FDSDWNPQND-------LQAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred E--------eCCCCCcchH-------HHHHHHHHhhcccceEEEEEEecCCchH
Confidence 7 8888776654 2344455555555566799999987664
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.91 E-value=2.8e-08 Score=115.03 Aligned_cols=131 Identities=8% Similarity=0.002 Sum_probs=81.9
Q ss_pred EEEcCCCChHhHHHHHHH---HhcCCCcEEEecchHHHHHHHHHHHHhhcC-CccCCeeeeeec---------cccccCC
Q 004875 46 LIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRN-CELGGEVGYHIG---------HSKHLSE 112 (726)
Q Consensus 46 ii~a~TGSGKTt~ip~~l---le~~~~~Iivt~Prrlaa~~~a~~va~~~~-~~lg~~Vgy~v~---------~~~~~~~ 112 (726)
+..+-+|||||..+.+.+ +..+. .+++..|.--.+.++.+++...++ .. .+.|+-+ +......
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~---v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGD---VAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCc---EEEECCCCCHHHHHHHHHHHhCC
Confidence 445557999997777766 44454 466666666667788888887665 22 2223321 1122356
Q ss_pred CCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHH----HHHHHHHhcCCCceEEEeccCCCHHHHHHH
Q 004875 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL----VCVKQLLLKKNDLRVVLMSATADITKYRDY 187 (726)
Q Consensus 113 ~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll----~~lk~l~~~~~~lklIlmSATl~~~~~~~~ 187 (726)
..+|+++|-.-+. ..+.+.++|||||-|+-+...+-.. --+..+.....+..+|+.|||.+.+.+...
T Consensus 240 ~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 240 QARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 6899999975442 2455899999999997444332110 001122233457899999999998776553
No 149
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.88 E-value=4.4e-08 Score=105.71 Aligned_cols=121 Identities=24% Similarity=0.300 Sum_probs=97.0
Q ss_pred HHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccc
Q 004875 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSV 341 (726)
Q Consensus 263 ~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GI 341 (726)
+++..|...... +.++||-+=|++.++.+.++|.. .++++..+|+++..-||.++++..+.|. .|||.-|.+-.|+
T Consensus 434 DL~~EI~~r~~~-~eRvLVTtLTKkmAEdLT~Yl~e--~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGL 510 (663)
T COG0556 434 DLLSEIRKRVAK-NERVLVTTLTKKMAEDLTEYLKE--LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (663)
T ss_pred HHHHHHHHHHhc-CCeEEEEeehHHHHHHHHHHHHh--cCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccC
Confidence 444444433222 26999999999999999999995 4599999999999999999999999999 9999999999999
Q ss_pred cCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeec
Q 004875 342 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVT 399 (726)
Q Consensus 342 dip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s 399 (726)
|+|.|..|.. .|.... -..-|-.+..|-+|||.|.-.|+++.-..
T Consensus 511 DiPEVsLVAI--------lDADKe-----GFLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 511 DLPEVSLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred CCcceeEEEE--------eecCcc-----ccccccchHHHHHHHHhhccCCeEEEEch
Confidence 9999999975 454431 11224556699999999999999885443
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=9.4e-08 Score=110.57 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=71.4
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHH--HHHHHHhcCC-CcEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENM-EPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~--ip~~lle~~~-~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
++.|-+.++--+++-.+.=++--|..+.||-|||.. +|.++..... +.-++|.. .-+|..-++..+... .-+|-+
T Consensus 79 ~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvN-dYLA~RDae~m~~vy-~~LGLt 156 (939)
T PRK12902 79 KRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVN-DYLARRDAEWMGQVH-RFLGLS 156 (939)
T ss_pred HHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCC-HHHHHhHHHHHHHHH-HHhCCe
Confidence 344555566666777776677779999999999944 3444433333 34445544 444444444433322 134556
Q ss_pred eeeeeccc----cccCCCCeEEEEChHHH-----HHHHHhc--CCCCCceeEEEEccccc
Q 004875 100 VGYHIGHS----KHLSERSKIVFKTAGVL-----LDEMRDR--GLNALKYKVIILDEVHE 148 (726)
Q Consensus 100 Vgy~v~~~----~~~~~~~~Iiv~T~g~L-----l~~l~~~--~l~l~~~~~VIIDEaHe 148 (726)
||...... .+..=.++|+|+|+.-| .+.+... ......+.+.||||||-
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 66543211 11223589999999655 4444321 11234788999999993
No 151
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.79 E-value=5.6e-06 Score=95.06 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=52.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC----C-cEEEEEcccccccccC-------
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS----H-RKVILATNIAESSVTI------- 343 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~----~-rkVlvaTniae~GIdi------- 343 (726)
+|.+||-+.++..++.+++.|.... .+.+ ...|..++ +...++.|+. + ..|+++|+-+-+|||+
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l-~~~~-l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGI-PAEI-VIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhc-CCCE-EEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 4799999999999999999996432 2333 34454432 2223455543 4 4999999999999999
Q ss_pred -C--CeeEEEeCCC
Q 004875 344 -P--KVAYVIDSCR 354 (726)
Q Consensus 344 -p--~v~~VId~G~ 354 (726)
| .++.||..-+
T Consensus 546 ~~G~~Ls~ViI~kL 559 (636)
T TIGR03117 546 DKDNLLTDLIITCA 559 (636)
T ss_pred CCCCcccEEEEEeC
Confidence 3 4777775333
No 152
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.58 E-value=5.1e-06 Score=88.99 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=78.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc---EEEEEcccccccccCCCeeEEEeC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r---kVlvaTniae~GIdip~v~~VId~ 352 (726)
+.+.+||+.-..-.+.+...+.+ .++..+.+.|..++.+|....+.|.... --|++-..+.+|+|+.....||.
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~--r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF- 568 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNK--RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF- 568 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHH--cCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE-
Confidence 46899999999888888888874 4578888999999999999999997543 34667788999999999999986
Q ss_pred CCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeech
Q 004875 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 400 (726)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~ 400 (726)
-....+...+ -+|.-|+-|.|-...=-++-|+-+
T Consensus 569 -------aEL~wnPgvL-------lQAEDRaHRiGQkssV~v~ylvAK 602 (689)
T KOG1000|consen 569 -------AELHWNPGVL-------LQAEDRAHRIGQKSSVFVQYLVAK 602 (689)
T ss_pred -------EEecCCCceE-------EechhhhhhccccceeeEEEEEec
Confidence 3333333334 133556666666644344445544
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.58 E-value=9.9e-06 Score=95.02 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=84.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcC-CCCCcEEEEecCCCCHHHHHHHhhccCCCc---EEEEEcccccccccCCCeeEEEe
Q 004875 276 EKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVID 351 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~-~~~~~~v~~lh~~l~~~er~~~~~~f~~~r---kVlvaTniae~GIdip~v~~VId 351 (726)
+.++||||.=+..++-+.+-|.+ ..+.+....+.|+.++.+|.++.+.|.++. -.+++|-+.+-|+|+-+.+.||.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 45899999999998888776643 345566778999999999999999998774 56778899999999999999995
Q ss_pred CCCceeeeecCCCCc-cccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 352 SCRSLQVFWDVNRKI-DSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 352 ~G~~k~~~yd~~~~~-~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
++...+. ..+ +|.-|+-|-|-.+-=.+|||+++...
T Consensus 1420 --------vEHDWNPMrDL--------QAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1420 --------VEHDWNPMRDL--------QAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred --------EecCCCchhhH--------HHHHHHHhhcCceeeeeeeehhcccH
Confidence 5544433 333 44555555555555679999887543
No 154
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.18 E-value=0.00028 Score=80.11 Aligned_cols=111 Identities=23% Similarity=0.237 Sum_probs=86.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc---EEEEEcccccccccCCCeeEEEeC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r---kVlvaTniae~GIdip~v~~VId~ 352 (726)
+.+||+|..=..-.+-+...|. ..++....|.|...-.+|..++..|.... -.|++|-..+-|||+-..+.||-
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~--~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi- 853 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLD--TLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII- 853 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHH--hcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE-
Confidence 4799999765555555555555 34588999999999999999999997665 66889999999999999999986
Q ss_pred CCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
||..-+.-. --+|.-|+-|.|-++|=.+|||+++...
T Consensus 854 -------hD~dFNP~d-------D~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 854 -------HDIDFNPYD-------DKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred -------eecCCCCcc-------cchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 554433222 2366789999999999999999998654
No 155
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.17 E-value=2.1e-05 Score=93.01 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=60.3
Q ss_pred CCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCH-----HHHHH
Q 004875 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI-----TKYRD 186 (726)
Q Consensus 112 ~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~-----~~~~~ 186 (726)
....|+++||.+|..-+..+.+++.+++.||||||| |...+--..-+++.....+++--|.+|||.+.. +.+.+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~ 84 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLET 84 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHH
Confidence 457899999999999999888888899999999999 666554444445555566777789999999743 45555
Q ss_pred HHhhc
Q 004875 187 YFRDL 191 (726)
Q Consensus 187 ~f~~~ 191 (726)
....+
T Consensus 85 vmk~L 89 (814)
T TIGR00596 85 KMRNL 89 (814)
T ss_pred HHHHh
Confidence 55543
No 156
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.14 E-value=2.2e-05 Score=83.15 Aligned_cols=136 Identities=22% Similarity=0.254 Sum_probs=67.9
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH---hcCCC----cEEEecchHHHHHHHHHHHHhhcCC-ccCCeeeeeeccc-----
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL---AENME----PILCTQPRRFAVVAVAKMVAKGRNC-ELGGEVGYHIGHS----- 107 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll---e~~~~----~Iivt~Prrlaa~~~a~~va~~~~~-~lg~~Vgy~v~~~----- 107 (726)
..+..+++-++|+|||.+...++. +.... .++++.|..+. .+....+...... .+ ..+-|. +..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~-~~W~~E~~~~~~~~~~-~v~~~~-~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLL-SQWKEEIEKWFDPDSL-RVIIYD-GDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTH-HHHHHHHHHHSGT-TS--EEEES-SSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchh-hhhhhhhccccccccc-cccccc-cccccccc
Confidence 346789999999999966655543 33322 35555565443 3344444443311 11 111121 222
Q ss_pred -cccCCCCeEEEEChHHHH--------HHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 108 -KHLSERSKIVFKTAGVLL--------DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 108 -~~~~~~~~Iiv~T~g~Ll--------~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
.......+++++|.+.+. ..+.. .++++||+||+|. .-+.+. ...+.+.... ..+.+++|||
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~-~k~~~s--~~~~~l~~l~-~~~~~lLSgT 171 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHR-LKNKDS--KRYKALRKLR-ARYRWLLSGT 171 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGG-GTTTTS--HHHHHHHCCC-ECEEEEE-SS
T ss_pred cccccccceeeecccccccccccccccccccc-----ccceeEEEecccc-cccccc--cccccccccc-cceEEeeccc
Confidence 223456789999999998 22221 2699999999994 212211 1112222222 4577889999
Q ss_pred CCHHHHHHHH
Q 004875 179 ADITKYRDYF 188 (726)
Q Consensus 179 l~~~~~~~~f 188 (726)
+-.+...+++
T Consensus 172 P~~n~~~dl~ 181 (299)
T PF00176_consen 172 PIQNSLEDLY 181 (299)
T ss_dssp -SSSGSHHHH
T ss_pred cccccccccc
Confidence 7333334433
No 157
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.07 E-value=7.8e-05 Score=90.60 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=79.0
Q ss_pred CcEEEEcCCCChHhHH---HHHHHHhc-CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeee---cc-cccc-CCC
Q 004875 43 RVTLIVGETGCGKSSQ---VPQFLLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI---GH-SKHL-SER 113 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~---ip~~lle~-~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v---~~-~~~~-~~~ 113 (726)
+.-+|.=-||||||.. +...+++. ....|+++.-|+-+-.|....+...-.... . +. .. .. .... ...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~-~-~~-~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF-N-DP-KAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhh-h-cc-cccCHHHHHHHHhcCC
Confidence 3579999999999932 34445554 334788888888887777666554321110 1 00 10 00 0111 235
Q ss_pred CeEEEEChHHHHHHHHhc-C-CCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 114 SKIVFKTAGVLLDEMRDR-G-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 114 ~~Iiv~T~g~Ll~~l~~~-~-l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
..|+|+|-+.+-...... . ..-.+-=+||+|||| |+-..+ +...++..+ ++...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~-~~~~~~~~~---~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGE-LAKLLKKAL---KKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccH-HHHHHHHHh---ccceEEEeeCCc
Confidence 689999999998776553 1 112255688999999 886644 334444443 447899999996
No 158
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.05 E-value=6.4e-06 Score=75.88 Aligned_cols=116 Identities=21% Similarity=0.295 Sum_probs=64.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHHhc--------CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccC
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLLAE--------NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLS 111 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~lle~--------~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~ 111 (726)
.+++.++|.|++|+|||+.+-.++.+. ....+.+..|.......+...++..++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999988887654 33345555554444566677777766543222
Q ss_pred CCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 112 ~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
-.|...+.+.+... +.-....+|||||+|+-. .+-.+..++.+.. ..++++|+.+-.
T Consensus 69 ------~~~~~~l~~~~~~~-l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDA-LDRRRVVLLVIDEADHLF--SDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHH-HHHCTEEEEEEETTHHHH--THHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHH-HHhcCCeEEEEeChHhcC--CHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 11233333333221 001133799999999532 3555556666655 667777765544
No 159
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.95 E-value=2.4e-05 Score=77.68 Aligned_cols=120 Identities=19% Similarity=0.282 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHH---HHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~---lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
+++-|.+++..+..+ +.++|.|+.|+||||.+-.. +.+.+ .+|+++.|..-++..+.+.. +..
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~Aa~~L~~~~----~~~------- 69 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKAAKELREKT----GIE------- 69 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHHHHHHHHHH----TS--------
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHHHHHHHHhh----Ccc-------
Confidence 467899999999644 47889999999999776543 23334 46666666666665555542 111
Q ss_pred eeccccccCCCCeEEEEChHHHHHHHHhcC----CCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 103 ~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~----l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
..|-..++....... ..+...++|||||+- +++...+..+++.+.. .+.|+|++.=+
T Consensus 70 ---------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 70 ---------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp ---------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ---------------hhhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 011111111000000 003367899999998 5665555555554432 35677776554
No 160
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.0001 Score=80.32 Aligned_cols=126 Identities=17% Similarity=0.305 Sum_probs=80.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhc-------CCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAE-------NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSER 113 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~-------~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~ 113 (726)
.++++++||||+||||.+..+.... +.. .++.+-+.|.++...-+.+++.+|.++ .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~-------------- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--K-------------- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--E--------------
Confidence 3578999999999998876664321 222 356667778887766666676555432 0
Q ss_pred CeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc-CCC-ceEEEeccCCCHHHHHHHHhhc
Q 004875 114 SKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KND-LRVVLMSATADITKYRDYFRDL 191 (726)
Q Consensus 114 ~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~-~~~-lklIlmSATl~~~~~~~~f~~~ 191 (726)
..-++.-+...+.. +.++++||||++. |+......+.-++.++.. .++ -.++++|||...+.+.+.|...
T Consensus 238 ---~~~~~~~l~~~L~~----~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 238 ---AIESFKDLKEEITQ----SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred ---eeCcHHHHHHHHHH----hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 11134444444432 2489999999999 665432234444555443 333 4789999999888888887764
No 161
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.90 E-value=3.6e-05 Score=76.29 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=78.7
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh---cCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA---ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle---~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
++++++||||+||||.+..+... .+.+ .++++-+.|+.|...-+..++.++.++-. .+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~~~---------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ARTES---------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SSTTS----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch-----hhcch----------
Confidence 46899999999999887766432 2332 57788889999999999999987754311 01000
Q ss_pred EChHHHH-HHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc-CCCceEEEeccCCCHHHHH
Q 004875 119 KTAGVLL-DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADITKYR 185 (726)
Q Consensus 119 ~T~g~Ll-~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~-~~~lklIlmSATl~~~~~~ 185 (726)
.|..++ +.+... ...++++|+||-+- |+....-.+.-++.+... .++-.+++||||...+.+.
T Consensus 67 -~~~~~~~~~l~~~--~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 67 -DPAEIAREALEKF--RKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp -CHHHHHHHHHHHH--HHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred -hhHHHHHHHHHHH--hhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 133333 333221 11268999999999 666555555555554433 5677889999998655443
No 162
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.82 E-value=5.3e-05 Score=89.26 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
++.+.+-+..++.. +.+|||-+.+.+.-+.+++.|...+ +..-.|++.....|...+-++ +.. .|.||||+
T Consensus 614 ~~Aii~ei~~~~~~----GrPVLVGT~SVe~SE~lS~~L~~~g--I~H~VLNAK~h~~EAeIVA~A--G~~GaVTIATNM 685 (1112)
T PRK12901 614 YNAVIEEITELSEA----GRPVLVGTTSVEISELLSRMLKMRK--IPHNVLNAKLHQKEAEIVAEA--GQPGTVTIATNM 685 (1112)
T ss_pred HHHHHHHHHHHHHC----CCCEEEEeCcHHHHHHHHHHHHHcC--CcHHHhhccchhhHHHHHHhc--CCCCcEEEeccC
Confidence 34444555555543 4699999999999999999998543 443344444333443333332 333 89999999
Q ss_pred ccccccCC--------CeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeec
Q 004875 337 AESSVTIP--------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (726)
Q Consensus 337 ae~GIdip--------~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s 399 (726)
|++|-||. |=-+||-+.++. |+--=.|-.|||||. .||.+-.+.|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHE------------------SRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCC------------------cHHHHHHHhcccccCCCCCcceEEEE
Confidence 99999996 334555433322 223338999999999 6887554444
No 163
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.80 E-value=0.0063 Score=65.88 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=77.8
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc---EEEEEcccccccccCCCeeEEEeCC
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDSC 353 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r---kVlvaTniae~GIdip~v~~VId~G 353 (726)
-+.|||..=..-.+-+.-.|. ..++.++.|-|+|++..|...++.|++.- -.+++--..+..+++-....|.-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~--kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm-- 714 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLG--KAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM-- 714 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhh--ccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe--
Confidence 355676555555555555555 35699999999999999999999998754 44566666667777777778876
Q ss_pred CceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechh
Q 004875 354 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (726)
Q Consensus 354 ~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~ 401 (726)
.||..+...- -++.-|+-|.|.-+|=++.+++-+.
T Consensus 715 ------mDPWWNpaVe-------~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 715 ------MDPWWNPAVE-------WQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ------ecccccHHHH-------hhhhhhHHhhcCccceeEEEeehhc
Confidence 6776654322 2456677788888999999998764
No 164
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.80 E-value=0.00026 Score=76.03 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=93.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh----cCCC--cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCe
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA----ENME--PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle----~~~~--~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~ 115 (726)
++++.++||||.||||.+...... .+.. .||-+-..|+.|...-+..++.+|+++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 689999999999999877665432 2222 577788899999988888898887653
Q ss_pred EEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCC-ceEEEeccCCCHHHHHHHHhhc
Q 004875 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND-LRVVLMSATADITKYRDYFRDL 191 (726)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~-lklIlmSATl~~~~~~~~f~~~ 191 (726)
.++-+|.=|...+.. +.++++|.||=+- |+........-++.+...-.+ --.+++|||...+.+.+.+...
T Consensus 264 ~vv~~~~el~~ai~~----l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 EVVYSPKELAEAIEA----LRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred EEecCHHHHHHHHHH----hhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 234456666666553 4588999999999 777766666667777655433 4568899999888888887764
No 165
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.77 E-value=0.0002 Score=83.04 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=90.1
Q ss_pred HHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC--C--cEEEEEccccccc
Q 004875 265 VLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS--H--RKVILATNIAESS 340 (726)
Q Consensus 265 v~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~--~--rkVlvaTniae~G 340 (726)
+..|.......+++||.|+.-..-..-+..+|. ..++....+.|....++|-..++.|.. . ...+++|-....|
T Consensus 715 LDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~--~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragglg 792 (1157)
T KOG0386|consen 715 LDRILPKLKATGHRVLLFSQMTRLMDILEDYLQ--IREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLG 792 (1157)
T ss_pred HHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHh--hhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccc
Confidence 333333333345799999988777777777777 456888999999999999988888842 2 2899999999999
Q ss_pred ccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC---CCceEEEeechhhH
Q 004875 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFF 403 (726)
Q Consensus 341 Idip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~---~~G~~~~L~s~~~~ 403 (726)
+|+-..+.||- ||...+.... .|+.-||-|. ..-.++||.+-..+
T Consensus 793 lNlQtadtvii--------fdsdwnp~~d----------~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 793 LNLQTADTVII--------FDSDWNPHQD----------LQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred cchhhcceEEE--------ecCCCCchhH----------HHHHHHHHHhhchhheeeeeeehhhHH
Confidence 99998888887 8888877665 6666666555 66789999885443
No 166
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.76 E-value=5.5e-05 Score=74.90 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHH----HHhcCCCcEEEecc
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF----LLAENMEPILCTQP 76 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~----lle~~~~~Iivt~P 76 (726)
|.+..|..+++++.+++.+++.||.|||||+..... +.+....+|+++-|
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp 57 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRP 57 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 778899999999999999999999999999554443 33434468888876
No 167
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.76 E-value=0.00013 Score=84.10 Aligned_cols=136 Identities=20% Similarity=0.252 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH---hcC---CCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll---e~~---~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
.+.|++++.....++.++|.|++|+||||.+..++. +.. ...|.++.|+.-||..+.+.+..... .++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~---- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL---- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc----
Confidence 478999999989999999999999999988766543 212 23688888888887777776654221 1110
Q ss_pred eeccccccCCCCeEEEEChHHHHHHH------HhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 103 HIGHSKHLSERSKIVFKTAGVLLDEM------RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 103 ~v~~~~~~~~~~~Iiv~T~g~Ll~~l------~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.+...........|--.|+... .....+...+++|||||+- +++...+..+++. .+++.|+|++.
T Consensus 229 ----~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlvG 299 (615)
T PRK10875 229 ----TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFLG 299 (615)
T ss_pred ----chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEec
Confidence 0000000001122333333221 1111122367999999998 6776666666654 35678888876
Q ss_pred cC
Q 004875 177 AT 178 (726)
Q Consensus 177 AT 178 (726)
=.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 54
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.73 E-value=0.00015 Score=76.42 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHH----HHHHHcCCcEEEEcCCCChHhHHHHHH
Q 004875 29 MSLREKI----VEKVLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 29 ~~~Q~~i----l~~i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
++.|.++ .+.+.+++.+++.+|||+|||..+...
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~ 47 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCL 47 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHH
Confidence 8899994 445567899999999999999554433
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.73 E-value=0.00015 Score=76.42 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHH----HHHHHcCCcEEEEcCCCChHhHHHHHH
Q 004875 29 MSLREKI----VEKVLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 29 ~~~Q~~i----l~~i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
++.|.++ .+.+.+++.+++.+|||+|||..+...
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~ 47 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCL 47 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHH
Confidence 8899994 445567899999999999999554433
No 170
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.70 E-value=0.00023 Score=82.02 Aligned_cols=135 Identities=23% Similarity=0.297 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH---hcC----CCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 30 ~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll---e~~----~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
+.|++++.....++.++|+|+.|+||||.+..++. +.. ..+|.++.|+--||..+.+.+..... .++..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 68889999999999999999999999987766542 221 13688888887777776666544321 11100
Q ss_pred eeccccccCCCCeEEEEChHHHHHHHH------hcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 103 HIGHSKHLSERSKIVFKTAGVLLDEMR------DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 103 ~v~~~~~~~~~~~Iiv~T~g~Ll~~l~------~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
........+...|-..|+.... ...-+...+++|||||+= +++...+..+++.+ ++..|+|++.
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~al---~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKAL---PPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHhc---CCCCEEEEEC
Confidence 0000011122334444432211 111123378999999997 67766666655533 5678888876
Q ss_pred cC
Q 004875 177 AT 178 (726)
Q Consensus 177 AT 178 (726)
=.
T Consensus 294 D~ 295 (586)
T TIGR01447 294 DK 295 (586)
T ss_pred Ch
Confidence 44
No 171
>PRK10536 hypothetical protein; Provisional
Probab=97.62 E-value=0.00016 Score=73.64 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH----hcCCCcEEEecch
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPR 77 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll----e~~~~~Iivt~Pr 77 (726)
-|.+..|...+.++.++..+++.||+|||||+....+.+ +....+|+++-|.
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 678899999999999999999999999999977666544 3335678888774
No 172
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00031 Score=76.06 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=75.7
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh----cCCCcE--EEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCC
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA----ENMEPI--LCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle----~~~~~I--ivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~ 114 (726)
++.+++++||||+||||.+..+... .+..+| +.+-+-|+.+....+.+++.+|..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~------------------ 197 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV------------------ 197 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce------------------
Confidence 4679999999999999888776533 233333 3334446666666666666555322
Q ss_pred eEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc-CCCceEEEeccCCCHHHHHH
Q 004875 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADITKYRD 186 (726)
Q Consensus 115 ~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~-~~~lklIlmSATl~~~~~~~ 186 (726)
..+.+++-+...+.. +.++++|+||++- |....+.+...++.+... .+.-.++++|||...+.+.+
T Consensus 198 -~~~~~~~~l~~~l~~----l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 198 -HAVKDGGDLQLALAE----LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred -EecCCcccHHHHHHH----hcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 112223333333332 2377999999998 665556666666665433 34457899999986655443
No 173
>PF13245 AAA_19: Part of AAA domain
Probab=97.60 E-value=0.00015 Score=60.04 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=39.3
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHHHhcC------CCcEEEecchHHHHHHHHHHH
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFLLAEN------MEPILCTQPRRFAVVAVAKMV 88 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~lle~~------~~~Iivt~Prrlaa~~~a~~v 88 (726)
++.+++.++|.||.|||||+.+...+.+.. ...|+++.|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 455467788899999999976666554322 457999999999998888887
No 174
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.59 E-value=0.00031 Score=83.23 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH--HhcCC--CcEEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l--le~~~--~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
...+.+-|.+++..+..++.++|.|+.|+||||.+-.++ ++... ..|+++.|+--||.. +++..|...
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~----L~e~~g~~a---- 392 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKR----LGEVTGLTA---- 392 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHH----HHHhcCCcc----
Confidence 467889999999999999999999999999998765443 23222 457767776666543 333322110
Q ss_pred eeeeccccccCCCCeEEEEChHHHHHHHHh-----cCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRD-----RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 101 gy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~-----~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
.|-..++..... ..-.....++|||||++ +++...+..+++. .+++.|+|++
T Consensus 393 ------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~rlilv 449 (720)
T TIGR01448 393 ------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHARLLLV 449 (720)
T ss_pred ------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCEEEEE
Confidence 111122211000 00012368999999999 6776666555553 3467888887
Q ss_pred ccC
Q 004875 176 SAT 178 (726)
Q Consensus 176 SAT 178 (726)
.=+
T Consensus 450 GD~ 452 (720)
T TIGR01448 450 GDT 452 (720)
T ss_pred Ccc
Confidence 655
No 175
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00091 Score=72.09 Aligned_cols=125 Identities=13% Similarity=0.208 Sum_probs=72.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHH---hcCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL---AENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll---e~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
+.+.++||||+||||.+..+.. ..+.. .++-+-|.|+++...-+..+...+..+ +..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~v~ 302 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IAV 302 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------Eec
Confidence 5789999999999987766643 33333 244455677666554444444333221 112
Q ss_pred EChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEeccCCCHHHHHHHH
Q 004875 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATADITKYRDYF 188 (726)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~-~~~~~lklIlmSATl~~~~~~~~f 188 (726)
.++..+.+.+..-. ...++++|+||-+= |+....-.+.-++.++ ...|+-.++++|||.......+..
T Consensus 303 ~d~~~L~~aL~~lk-~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 303 RDEAAMTRALTYFK-EEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred CCHHHHHHHHHHHH-hccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 35666666554311 01268999999998 5554444444444444 345566678899997554443333
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.49 E-value=0.0022 Score=74.78 Aligned_cols=97 Identities=24% Similarity=0.236 Sum_probs=63.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCC---Cee----
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIP---KVA---- 347 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip---~v~---- 347 (726)
+.++||-..+.+..+.+.+.|.+.+ +....+.+.-...|...+ ...+.. -|-||||+|.+|-||- +..
T Consensus 429 gqPvLvgT~sie~SE~ls~~L~~~~--i~h~VLNAk~h~~EA~Ii--a~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~ 504 (822)
T COG0653 429 GQPVLVGTVSIEKSELLSKLLRKAG--IPHNVLNAKNHAREAEII--AQAGQPGAVTIATNMAGRGTDIKLGGNPEFVME 504 (822)
T ss_pred CCCEEEcCcceecchhHHHHHHhcC--CCceeeccccHHHHHHHH--hhcCCCCccccccccccCCcccccCCCHHHHHH
Confidence 4799999999999999999998544 333334343333333333 333444 8999999999999985 221
Q ss_pred ----EEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceE
Q 004875 348 ----YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQV 394 (726)
Q Consensus 348 ----~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~ 394 (726)
+||-+.+....+.| .|-.||+||. -||..
T Consensus 505 lGGL~VIgTERhESRRID------------------nQLRGRsGRQGDpG~S 538 (822)
T COG0653 505 LGGLHVIGTERHESRRID------------------NQLRGRAGRQGDPGSS 538 (822)
T ss_pred hCCcEEEecccchhhHHH------------------HHhhcccccCCCcchh
Confidence 34433332222222 7999999999 57763
No 177
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.48 E-value=0.001 Score=79.20 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=77.7
Q ss_pred CCCcHHHHHHHHHHHHc-CCcEEEEcCCCChHhHHHHHHH--HhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 25 SLPVMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~-~~~vii~a~TGSGKTt~ip~~l--le~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
...+.+-|.+++..+.. ++.++|.|+.|+||||.+-..+ ++.....|+.+.|.-.+|..+. +..|..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g~~------ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----AESGIE------ 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----hccCCc------
Confidence 35688999999999886 5789999999999998765543 3333345666667666554443 222211
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
-.|-..++..+..+...+...++|||||+- +++.+.+..+++.... ...|+|++.=+
T Consensus 420 ----------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~--~~~kliLVGD~ 476 (744)
T TIGR02768 420 ----------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE--AGAKVVLVGDP 476 (744)
T ss_pred ----------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEECCh
Confidence 012222322222222234588999999998 6777666666655432 45678877633
No 178
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.48 E-value=0.0015 Score=60.51 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=24.6
Q ss_pred HHHHHHHHHc--CCcEEEEcCCCChHhHHHHHHHHh
Q 004875 32 REKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 32 Q~~il~~i~~--~~~vii~a~TGSGKTt~ip~~lle 65 (726)
..++...+.. ++.++|.||+|+|||+.+-.+...
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445555555 688999999999999866555443
No 179
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.48 E-value=0.00055 Score=80.26 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=96.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc---EEEEEcccccccccCCCeeEEEeC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r---kVlvaTniae~GIdip~v~~VId~ 352 (726)
+.++|||..-....+-+...|. ..++..+-+.|....++|...++.|...+ ..|++|--...|||+-+.+.||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLn--yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF- 1352 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLN--YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF- 1352 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHh--hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE-
Confidence 5799999988888888888887 45688899999999999999999997554 67999999999999999999998
Q ss_pred CCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
||...+... -++|.-|+-|.|+++.=..|||+++...
T Consensus 1353 -------YDsDwNPtM-------DaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1353 -------YDSDWNPTM-------DAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred -------ecCCCCchh-------hhHHHHHHHhhcCccceEEEEeeccchH
Confidence 998876543 3788999999999999999999998654
No 180
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.47 E-value=0.0023 Score=75.87 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhcc----CCCc-EEEE
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC----KSHR-KVIL 332 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f----~~~r-kVlv 332 (726)
.+.+.+.+..+.. . .|.+|||+++++..+.+++.|.... +..+. .++..+ +..+++.| ..+. .|++
T Consensus 520 ~~~~~~~i~~l~~-~---~gg~LVlFtSy~~l~~v~~~l~~~~-~~~ll-~Q~~~~---~~~ll~~f~~~~~~~~~~VL~ 590 (697)
T PRK11747 520 TAEMAEFLPELLE-K---HKGSLVLFASRRQMQKVADLLPRDL-RLMLL-VQGDQP---RQRLLEKHKKRVDEGEGSVLF 590 (697)
T ss_pred HHHHHHHHHHHHh-c---CCCEEEEeCcHHHHHHHHHHHHHhc-CCcEE-EeCCch---HHHHHHHHHHHhccCCCeEEE
Confidence 3444455555544 2 2568999999999999999886421 23333 355433 34445444 3455 8999
Q ss_pred EcccccccccCCC--eeEEEeCCCceeeeecCCCCc--------------cccceE--eecHHhHHHHcCCCCCC--CCc
Q 004875 333 ATNIAESSVTIPK--VAYVIDSCRSLQVFWDVNRKI--------------DSAELV--WVSQSQAEQRRGRTGRT--CDG 392 (726)
Q Consensus 333 aTniae~GIdip~--v~~VId~G~~k~~~yd~~~~~--------------~~l~~~--~iS~a~~~QR~GRaGR~--~~G 392 (726)
+|....+|||+|| .++||-.|++- .++... +.+... |----.+.|-+||.=|. ..|
T Consensus 591 g~~sf~EGVD~pGd~l~~vII~kLPF----~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G 666 (697)
T PRK11747 591 GLQSFAEGLDLPGDYLTQVIITKIPF----AVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRG 666 (697)
T ss_pred EeccccccccCCCCceEEEEEEcCCC----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceE
Confidence 9999999999996 78888877652 222211 111100 11122468999999888 457
Q ss_pred eEEEe
Q 004875 393 QVYRL 397 (726)
Q Consensus 393 ~~~~L 397 (726)
..+.|
T Consensus 667 ~i~il 671 (697)
T PRK11747 667 RVTIL 671 (697)
T ss_pred EEEEE
Confidence 76655
No 181
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.43 E-value=0.018 Score=63.53 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=86.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccc--cccccCCCeeEEEeC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIA--ESSVTIPKVAYVIDS 352 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTnia--e~GIdip~v~~VId~ 352 (726)
.+.+|||+|++-+--.+...|+ ..++....+|--.+..+..++-..|..|+ +|++-|-=+ =+=..|-||+.||-
T Consensus 300 ~~~~LIfIPSYfDfVRlRN~lk--~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF- 376 (442)
T PF06862_consen 300 MSGTLIFIPSYFDFVRLRNYLK--KENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF- 376 (442)
T ss_pred CCcEEEEecchhhhHHHHHHHH--hcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE-
Confidence 4799999999999999999998 45578888888888888777778888888 999999532 23356788999998
Q ss_pred CCceeeeecCCCCccccceEeecHHhHHHHcCCCCC----CCCceEEEeechhhHhhc
Q 004875 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGR----TCDGQVYRLVTKSFFGTL 406 (726)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR----~~~G~~~~L~s~~~~~~l 406 (726)
|.+|....-| ++...+.+.... ...+.|..||++-+.-.|
T Consensus 377 -------Y~~P~~p~fY-------~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~L 420 (442)
T PF06862_consen 377 -------YGPPENPQFY-------SELLNMLDESSGGEVDAADATVTVLYSKYDALRL 420 (442)
T ss_pred -------ECCCCChhHH-------HHHHhhhcccccccccccCceEEEEecHhHHHHH
Confidence 8888877766 444555554433 156889999998655443
No 182
>PRK06526 transposase; Provisional
Probab=97.43 E-value=0.00038 Score=71.92 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=20.6
Q ss_pred HHHHcCCcEEEEcCCCChHhHHHHHH
Q 004875 37 EKVLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 37 ~~i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+..+++++++||+|+|||+....+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHH
Confidence 44567789999999999999665444
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.40 E-value=0.00055 Score=74.54 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=49.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
++++|.|..|||||..+..++.+. .....+++.........+...++.... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 478999999999997776665543 222333333333334444444443220 01112223
Q ss_pred EChHHHHHHHHhcCCCCCceeEEEEccccccccc
Q 004875 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE 152 (726)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~ 152 (726)
..+..+.............+++||||||| |...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 33444433332111123489999999999 5544
No 184
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.40 E-value=0.0023 Score=71.08 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh----c-CCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCe
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA----E-NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle----~-~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~ 115 (726)
+++++++||||+||||.+..+... . +.+ .++-+-|.|.++......++..++..+ .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------~------------ 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------E------------ 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------E------------
Confidence 568899999999999877665432 2 222 344456667776666666666544321 1
Q ss_pred EEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-c-CCCceEEEeccCCCHHHHHHHHhh
Q 004875 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-K-KNDLRVVLMSATADITKYRDYFRD 190 (726)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~-~~~lklIlmSATl~~~~~~~~f~~ 190 (726)
...++.-+...+.. +.++++||||.+- |.....-....++.++. . .+.-..+++|||.....+.+....
T Consensus 283 -~~~~~~~l~~~l~~----~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 283 -VVYDPKELAKALEQ----LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred -ccCCHHhHHHHHHH----hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 11234444444442 2378999999997 44333333344444444 2 344568889999877666655443
No 185
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0025 Score=75.44 Aligned_cols=134 Identities=16% Similarity=0.087 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC-Cc-EEEEEc
Q 004875 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS-HR-KVILAT 334 (726)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~-~r-kVlvaT 334 (726)
....+...+..+.... +|++|||+|+.+..+.+.+.+...... .....+|..+.+ ..++.|+. +. -++|+|
T Consensus 463 ~~~~~~~~i~~~~~~~---~~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~ 535 (654)
T COG1199 463 LLAKLAAYLREILKAS---PGGVLVLFPSYEYLKRVAERLKDERST-LPVLTQGEDERE---ELLEKFKASGEGLILVGG 535 (654)
T ss_pred HHHHHHHHHHHHHhhc---CCCEEEEeccHHHHHHHHHHHhhcCcc-ceeeecCCCcHH---HHHHHHHHhcCCeEEEee
Confidence 3344444455554444 358999999999999999999854322 344556665555 44555543 33 799999
Q ss_pred ccccccccCCCe--eEEEeCCCceee----------eecCCCCcc--ccceEeecHHhHHHHcCCCCCC--CCceEEEe
Q 004875 335 NIAESSVTIPKV--AYVIDSCRSLQV----------FWDVNRKID--SAELVWVSQSQAEQRRGRTGRT--CDGQVYRL 397 (726)
Q Consensus 335 niae~GIdip~v--~~VId~G~~k~~----------~yd~~~~~~--~l~~~~iS~a~~~QR~GRaGR~--~~G~~~~L 397 (726)
..+.+|||+|+= +.||-.|++-.. .|....+.. .+...+..--...|-+||+=|. ..|.++.|
T Consensus 536 gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 536 GSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred ccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 999999999953 666665654221 111111111 1112233345568999999998 44777766
No 186
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.00076 Score=61.82 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcCCC--cEEEecc
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAENME--PILCTQP 76 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~~~--~Iivt~P 76 (726)
++.+++.||+||||||.+..++...... .++.+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~ 38 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG 38 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC
Confidence 5789999999999999888777665544 3555444
No 187
>PRK14974 cell division protein FtsY; Provisional
Probab=97.23 E-value=0.0035 Score=67.24 Aligned_cols=128 Identities=17% Similarity=0.240 Sum_probs=71.8
Q ss_pred CcEEEEcCCCChHhHHHHHH---HHhcCCCcEEE-ecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQF---LLAENMEPILC-TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~---lle~~~~~Iiv-t~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
..++++|++|+||||.+..+ +.+.+...+++ +-+.|.++....+..+..+|..+.. + . ...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-----~--~g~------ 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-----K--YGA------ 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-----c--CCC------
Confidence 57899999999999866554 33444333333 3455666665556666666543211 0 0 000
Q ss_pred ECh-HHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEeccCCCHHHH--HHHHh
Q 004875 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATADITKY--RDYFR 189 (726)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~-~~~~~lklIlmSATl~~~~~--~~~f~ 189 (726)
.| .++.+.+... ...++++||||.++ |.....-++.-++.+. ...|+..+++++||...+.. ...|.
T Consensus 206 -dp~~v~~~ai~~~--~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 206 -DPAAVAYDAIEHA--KARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred -CHHHHHHHHHHHH--HhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 11 1222322221 11367899999999 6553333333344443 34688889999999743333 44554
No 188
>PRK08181 transposase; Validated
Probab=97.22 E-value=0.0028 Score=65.92 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=19.8
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHH
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.+.+++++++.||+|+|||.+...+
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHH
Confidence 4557889999999999999654443
No 189
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.21 E-value=0.0065 Score=63.17 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHH----------cCCcEEEEcCCCChHhHHHHHHHHhc---CC-CcEEEecchHHHHHHHHHHHHhhcC
Q 004875 28 VMSLREKIVEKVL----------ENRVTLIVGETGCGKSSQVPQFLLAE---NM-EPILCTQPRRFAVVAVAKMVAKGRN 93 (726)
Q Consensus 28 i~~~Q~~il~~i~----------~~~~vii~a~TGSGKTt~ip~~lle~---~~-~~Iivt~Prrlaa~~~a~~va~~~~ 93 (726)
++..|-|.+-... ...-.++--.||.||--++..+++++ +. +.|+++....+... ..+-+.. .|
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D-a~RDl~D-IG 115 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD-AERDLRD-IG 115 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH-HHHHHHH-hC
Confidence 4666766554432 23456788889999998888888765 33 36888887666432 2222222 22
Q ss_pred CccCCeeee-eeccccccCCCCeEEEEChHHHHHHHHhc---CCCC---------CceeEEEEcccccccccccH-----
Q 004875 94 CELGGEVGY-HIGHSKHLSERSKIVFKTAGVLLDEMRDR---GLNA---------LKYKVIILDEVHERSVESDL----- 155 (726)
Q Consensus 94 ~~lg~~Vgy-~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~---~l~l---------~~~~~VIIDEaHeR~~~~d~----- 155 (726)
..-...... .....+...-...|+|+|...|...-... ...+ .--.+||+||+|. .-+..-
T Consensus 116 ~~~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~-akn~~~~~~~~ 194 (303)
T PF13872_consen 116 ADNIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK-AKNLSSGSKKP 194 (303)
T ss_pred CCcccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh-cCCCCccCccc
Confidence 111000000 00111112234569999998887664211 0000 1236999999994 333221
Q ss_pred --HHHHHHHHHhcCCCceEEEeccCC
Q 004875 156 --VLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 156 --ll~~lk~l~~~~~~lklIlmSATl 179 (726)
.-.....+..+-|+.|++-+|||-
T Consensus 195 sk~g~avl~LQ~~LP~ARvvY~SATg 220 (303)
T PF13872_consen 195 SKTGIAVLELQNRLPNARVVYASATG 220 (303)
T ss_pred cHHHHHHHHHHHhCCCCcEEEecccc
Confidence 112223344455888999999994
No 190
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.17 E-value=0.002 Score=76.85 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=71.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh----cCCCcEEEecchHHHHHHHHHHHH-----hhcCCccCC-eeeeeeccccc---
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA----ENMEPILCTQPRRFAVVAVAKMVA-----KGRNCELGG-EVGYHIGHSKH--- 109 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle----~~~~~Iivt~Prrlaa~~~a~~va-----~~~~~~lg~-~Vgy~v~~~~~--- 109 (726)
.++.+.++||+|||..+...+++ .+..+.+++.|....-..+.+.+. ..+....++ .+-+.+-...+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 58899999999999755555443 355677777776554444433322 112212222 23332211111
Q ss_pred ------c-------------CCCCeEEEEChHHHHHHHHh----c-----CC--CCC----ceeEEEEcccccccccccH
Q 004875 110 ------L-------------SERSKIVFKTAGVLLDEMRD----R-----GL--NAL----KYKVIILDEVHERSVESDL 155 (726)
Q Consensus 110 ------~-------------~~~~~Iiv~T~g~Ll~~l~~----~-----~l--~l~----~~~~VIIDEaHeR~~~~d~ 155 (726)
. .....|+++|.++|...... + .. .+. .=-+|||||.|. . +++
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~-~-~~~- 216 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR-F-PRD- 216 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC-C-Ccc-
Confidence 1 11468999999988653220 0 00 000 234799999993 2 221
Q ss_pred HHHHHHHHHhcCCCceEEEeccCCCH
Q 004875 156 VLVCVKQLLLKKNDLRVVLMSATADI 181 (726)
Q Consensus 156 ll~~lk~l~~~~~~lklIlmSATl~~ 181 (726)
-...+.+...+|.. ++..|||.+.
T Consensus 217 -~k~~~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred -hHHHHHHHhcCccc-EEEEeeecCC
Confidence 11223344445543 6669999854
No 191
>PRK04296 thymidine kinase; Provisional
Probab=97.17 E-value=0.0032 Score=62.22 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecc
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQP 76 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~P 76 (726)
+..++++||+|+||||.+..++... ...++++.-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4568999999999999988887653 2335555544
No 192
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0033 Score=68.70 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhc----CCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeE
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAE----NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~----~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~I 116 (726)
+..++++||||+||||++.++.... +.. .++-+-+.|.++....++.+...+..+ +.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~-----~~------------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF-----YP------------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCe-----ee-------------
Confidence 3568899999999999988876432 222 345566777777777777776554321 00
Q ss_pred EEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc----CCCceEEEeccCCCHHHHHHHHh
Q 004875 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK----KNDLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~----~~~lklIlmSATl~~~~~~~~f~ 189 (726)
......+...+.. .++++||||=+- |+....-.+.-++.++.. .+.-.++++|||...+...+...
T Consensus 285 -~~~~~~l~~~l~~-----~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 285 -VKDIKKFKETLAR-----DGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred -hHHHHHHHHHHHh-----CCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 0012334444432 378999999876 543333344444444432 23357899999986554444433
No 193
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0032 Score=70.57 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=69.2
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHH---hcC-CCcE--EEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCC
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLL---AEN-MEPI--LCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSER 113 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ll---e~~-~~~I--ivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~ 113 (726)
..++++.++|+||+||||.+..+.. ..+ ..++ +-+-+.|+.+.......+..++. .+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv--------~v~-------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGI--------AVH-------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCc--------eeE--------
Confidence 3578999999999999988765543 222 2233 33445566554433333322221 110
Q ss_pred CeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHHHHHHHHh
Q 004875 114 SKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 114 ~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~ 189 (726)
...+++.+...+.. +.++++||||.+- ++.....+...++.+......-.+++++++.....+.+.+.
T Consensus 412 ---~a~d~~~L~~aL~~----l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 412 ---EADSAESLLDLLER----LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred ---ecCcHHHHHHHHHH----hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHH
Confidence 01134445554442 2378999999998 44333333333343433334557888999976555554443
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.12 E-value=0.0029 Score=76.57 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=78.0
Q ss_pred CCCcHHHHHHHHHHHHc-CCcEEEEcCCCChHhHHHHHH--HHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 25 SLPVMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQF--LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~-~~~vii~a~TGSGKTt~ip~~--lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.+.+++-|.+++..+.. ++.++|.|..|+||||.+-.. +++.....|+.+.|.-.+|..+. +..|.
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~----e~tGi------- 412 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLE----GGSGI------- 412 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHh----hccCc-------
Confidence 46789999999999887 457899999999999875433 23333345666667666654433 21111
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
. -.|-..|+..+..+...+...++|||||+- ++++..+..+++... ....|+|++.=+
T Consensus 413 -~--------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~ 470 (988)
T PRK13889 413 -A--------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDP 470 (988)
T ss_pred -c--------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCH
Confidence 0 012333332222222234578999999998 777776666666543 346788887755
No 195
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.09 E-value=0.0031 Score=65.15 Aligned_cols=119 Identities=18% Similarity=0.093 Sum_probs=62.2
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHH--HHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~i--p~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v 104 (726)
..++.|--..=++.+| -|+...||=|||..+ |.++.......|-|+....-+|..-++.+...+. .+|-.||+..
T Consensus 77 ~p~~vQll~~l~L~~G--~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~-~LGlsv~~~~ 153 (266)
T PF07517_consen 77 RPYDVQLLGALALHKG--RLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYE-FLGLSVGIIT 153 (266)
T ss_dssp ---HHHHHHHHHHHTT--SEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHH-HTT--EEEEE
T ss_pred cccHHHHhhhhhcccc--eeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHH-HhhhccccCc
Confidence 3444454444344344 399999999999443 3334333333343333334444444444433322 4666777765
Q ss_pred cccccc----CCCCeEEEEChHHHHHHHHhcCC-------CCCceeEEEEccccc
Q 004875 105 GHSKHL----SERSKIVFKTAGVLLDEMRDRGL-------NALKYKVIILDEVHE 148 (726)
Q Consensus 105 ~~~~~~----~~~~~Iiv~T~g~Ll~~l~~~~l-------~l~~~~~VIIDEaHe 148 (726)
...... .=..+|+|+|..-+..-...+.+ ....+.++||||||-
T Consensus 154 ~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 154 SDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp TTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred cccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 433211 11367999999877543222111 124789999999994
No 196
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0038 Score=67.19 Aligned_cols=129 Identities=18% Similarity=0.189 Sum_probs=77.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH---hcCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeE
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL---AENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll---e~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~I 116 (726)
.++.++++||||+||||.+..+.. ..+.. .++-+-|.|.+|...-+..+...+..+ .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-------------------~ 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-------------------I 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-------------------E
Confidence 467889999999999987766543 33332 355556777766555554455433211 0
Q ss_pred EEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccCCCHHHHHHHHhh
Q 004875 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYFRD 190 (726)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSATl~~~~~~~~f~~ 190 (726)
...+|.-+.+.+..-. ...++++|+||=+= |+...+-.+.-++.+.. ..++.-++++|||.......+.+..
T Consensus 266 ~~~dp~dL~~al~~l~-~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~ 338 (407)
T PRK12726 266 VATSPAELEEAVQYMT-YVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPK 338 (407)
T ss_pred ecCCHHHHHHHHHHHH-hcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHh
Confidence 1134665655443211 12368999999998 55443434444444443 3566667889999877666666543
No 197
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.02 E-value=0.0018 Score=65.63 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHcCCc-EEEEcCCCChHhHHHHHHHHhc----------CCCcEEEecchHHHHHHHHHHHHh
Q 004875 28 VMSLREKIVEKVLENRV-TLIVGETGCGKSSQVPQFLLAE----------NMEPILCTQPRRFAVVAVAKMVAK 90 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~-vii~a~TGSGKTt~ip~~lle~----------~~~~Iivt~Prrlaa~~~a~~va~ 90 (726)
+.+.|.+++..+..... .+|.||.|+|||+.+...+... ...+|+++.|.-.++..+..++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46789999999998887 9999999999997766665443 234788888888888888888777
No 198
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.01 E-value=0.00016 Score=84.32 Aligned_cols=166 Identities=18% Similarity=0.178 Sum_probs=99.1
Q ss_pred CCCCcHHHHHHHHHHHHcC----------------CcEEEEcCCCChHhHHHHHHH----HhcCCCcEEEecchHHHHHH
Q 004875 24 SSLPVMSLREKIVEKVLEN----------------RVTLIVGETGCGKSSQVPQFL----LAENMEPILCTQPRRFAVVA 83 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~~----------------~~vii~a~TGSGKTt~ip~~l----le~~~~~Iivt~Prrlaa~~ 83 (726)
..+|....+...++.+.++ .++++-+|||+|||..+-..+ ...+.++++++.|-......
T Consensus 909 ~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvke 988 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKE 988 (1230)
T ss_pred CCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcc
Confidence 4467776666666666542 356888999999995543333 23455689999998888777
Q ss_pred HHHHHHhhcCCccCCeeeeeecc---ccccCCCCeEEEEChHHHHHHHHh--cCCCCCceeEEEEcccccccccccHHHH
Q 004875 84 VAKMVAKGRNCELGGEVGYHIGH---SKHLSERSKIVFKTAGVLLDEMRD--RGLNALKYKVIILDEVHERSVESDLVLV 158 (726)
Q Consensus 84 ~a~~va~~~~~~lg~~Vgy~v~~---~~~~~~~~~Iiv~T~g~Ll~~l~~--~~l~l~~~~~VIIDEaHeR~~~~d~ll~ 158 (726)
.+..+....... |..++-..+. +-..-.+++|+++||+..-....+ ..-.+.+++.+|+||.|.-+-+-...+.
T Consensus 989 r~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle 1067 (1230)
T KOG0952|consen 989 RSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLE 1067 (1230)
T ss_pred cccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEE
Confidence 777776655433 3333221111 112234689999999887655442 1112458999999999942222111221
Q ss_pred HHHHHH-----hcCCCceEEEeccC-CCHHHHHHHHhh
Q 004875 159 CVKQLL-----LKKNDLRVVLMSAT-ADITKYRDYFRD 190 (726)
Q Consensus 159 ~lk~l~-----~~~~~lklIlmSAT-l~~~~~~~~f~~ 190 (726)
++.... ...+..|++++|-- .++..+++|.+.
T Consensus 1068 ~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~ 1105 (1230)
T KOG0952|consen 1068 VIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNI 1105 (1230)
T ss_pred EEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCC
Confidence 111111 11234566666644 588899999875
No 199
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0073 Score=70.82 Aligned_cols=123 Identities=17% Similarity=0.204 Sum_probs=79.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH----hcCCCcEE--EecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCe
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL----AENMEPIL--CTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll----e~~~~~Ii--vt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~ 115 (726)
++++.++||||+||||.+..+.. ..+..+|. -+-+.|+.+...-+..++..+..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-------------------
Confidence 46789999999999988776652 33433433 344567777666666666554321
Q ss_pred EEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEeccCCCHHHHHHHH
Q 004875 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATADITKYRDYF 188 (726)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~-~~~~~lklIlmSATl~~~~~~~~f 188 (726)
.++.++.-+...+.. +.++++|+||=+= |+-...-+...++.+. ...+.-.++++|||...+.+.+..
T Consensus 246 ~~~~~~~~l~~al~~----~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 246 HAVKDAADLRFALAA----LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred cccCCHHHHHHHHHH----hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 012256666555543 3478999999998 6655444555555554 334667899999998776666443
No 200
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.94 E-value=0.0036 Score=68.41 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHH------HcCCcEEEEcCCCChHhHHHHHHHH--hcCCCcEEEecchHHHHHHH
Q 004875 28 VMSLREKIVEKV------LENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAV 84 (726)
Q Consensus 28 i~~~Q~~il~~i------~~~~~vii~a~TGSGKTt~ip~~ll--e~~~~~Iivt~Prrlaa~~~ 84 (726)
+.+-|+++++.+ .++.++.|.|+-|+|||+.+-.+.. ......++++.|+.+||..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 356788888887 6778999999999999988765543 33345799999999988765
No 201
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0093 Score=65.74 Aligned_cols=126 Identities=15% Similarity=0.182 Sum_probs=77.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh----cCC--CcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCC
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA----ENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle----~~~--~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~ 114 (726)
.++.+.++||||+||||.+..+... .+. ..++.+.+.|+.+.......++.+|..+-.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~---------------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS---------------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec----------------
Confidence 3568999999999999988755432 222 246667777888777777777765543210
Q ss_pred eEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEeccCCCHHHHHHHHhh
Q 004875 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFRD 190 (726)
Q Consensus 115 ~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~-~~lklIlmSATl~~~~~~~~f~~ 190 (726)
+-++.-+...+.. +.++++|+||.+= |.-..+.+...++.+.... +.-.++++|||...+.+.+....
T Consensus 254 ---v~~~~dl~~al~~----l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 254 ---IKDIADLQLMLHE----LRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred ---CCCHHHHHHHHHH----hcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 1112222222221 3478999999985 5544444555566654433 33467889999877666665543
No 202
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.0083 Score=64.29 Aligned_cols=53 Identities=9% Similarity=0.236 Sum_probs=30.6
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCC-CceEEEeccCCCHHHHHHHHh
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~-~lklIlmSATl~~~~~~~~f~ 189 (726)
.+++++|||+.+ ....+++....+-.++..+- .-+-+++|..++++.+...++
T Consensus 245 ~~~DLLIIDDlG-~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 245 INCDLLIIDDLG-TEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred ccCCEEEEeccC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 378999999998 34445554444444443332 113355566666666665553
No 203
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.011 Score=64.68 Aligned_cols=111 Identities=21% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccc--cccccCCCeeEEEeC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIA--ESSVTIPKVAYVIDS 352 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTnia--e~GIdip~v~~VId~ 352 (726)
...|||+.|++-+--++..++++.. +....+|.-.+...-.++-..|-.|| +|++-|.-+ =+--+|.||+-||-
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~--i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf- 628 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEE--ISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF- 628 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhh--cchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE-
Confidence 3578999999999988888887543 33333333223333333335565666 999999644 35568889999998
Q ss_pred CCceeeeecCCCCccccceEeecHHhHHHHcCCCC---CC--CCceEEEeechhhH
Q 004875 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG---RT--CDGQVYRLVTKSFF 403 (726)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaG---R~--~~G~~~~L~s~~~~ 403 (726)
|.+|+...-| ++...+.+|+- |. ..-.|-.||++-+-
T Consensus 629 -------YqpP~~P~FY-------sEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 629 -------YQPPNNPHFY-------SEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred -------ecCCCCcHHH-------HHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9999988777 56688888763 32 23468899998544
No 204
>PF13173 AAA_14: AAA domain
Probab=96.81 E-value=0.0059 Score=56.09 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=21.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+++.++|.||.|+||||.+-+++.+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999988876554
No 205
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.78 E-value=0.0012 Score=63.83 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=69.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCC--CcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc--cccccccCCC--eeE
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMKICKSHR-KVILATN--IAESSVTIPK--VAY 348 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~--~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn--iae~GIdip~--v~~ 348 (726)
+|.+|||+|+.+..+.+.+.+..... ++.+.. . ...+...+++.|+.+. -|++++. ...+|||+|+ ++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~--q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV--Q--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE--S--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeee--c--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 37999999999999999999886432 233332 2 2345666778888777 9999998 9999999995 888
Q ss_pred EEeCCCceeeeecCCC-------------CccccceEeecHHhHHHHcCCCCCCCC--ceEEEe
Q 004875 349 VIDSCRSLQVFWDVNR-------------KIDSAELVWVSQSQAEQRRGRTGRTCD--GQVYRL 397 (726)
Q Consensus 349 VId~G~~k~~~yd~~~-------------~~~~l~~~~iS~a~~~QR~GRaGR~~~--G~~~~L 397 (726)
||-.|++-...-|+.. ....+ ..+-.--...|-+||+=|... |..+.+
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDW-YLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHH-THHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhH-hhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 8887876432212110 00111 111222356899999999854 444433
No 206
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.0069 Score=70.35 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=25.7
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.+++++||||+| .+..+-...++|.+-.-.++.++|+.+
T Consensus 118 gr~KVIIIDEah--~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChh--hCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 379999999999 344455566677655444455655544
No 207
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.70 E-value=0.0097 Score=72.64 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=78.1
Q ss_pred CCCcHHHHHHHHHHHH-cCCcEEEEcCCCChHhHHHHHHH--HhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 25 SLPVMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~-~~~~vii~a~TGSGKTt~ip~~l--le~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
...+++-|.+++..+. .++.++|.|+.|+||||.+-... ++.....|+...|.--+|..+ .+..|.. +
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L----~e~~Gi~-----a 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL----EKEAGIQ-----S 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH----HHhhCCC-----e
Confidence 4678999999999885 46889999999999998775543 333334566666655555444 3332321 0
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
.|-..++-....+...+..-++|||||+. ++++..+..+++.+. ....|+|++.=+
T Consensus 450 -----------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 450 -----------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred -----------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 12222211111111234467899999998 788877777776664 245788887755
No 208
>PRK08727 hypothetical protein; Validated
Probab=96.68 E-value=0.0065 Score=62.07 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+++.|++|+|||..+-.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45999999999999655433
No 209
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.62 E-value=0.024 Score=58.97 Aligned_cols=127 Identities=13% Similarity=0.222 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh---cCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEE
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA---ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle---~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Ii 117 (726)
+..+.++|++|+||||.+..+... .+.. .++.+-+.|+.+....+..+...+ +.+ +.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~--------~~~-----------~~ 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG--------FEV-----------IA 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC--------ceE-----------Ee
Confidence 368999999999999876555432 2222 344444666554443333333222 111 01
Q ss_pred EEChHHHHHHHHhcCCCCCceeEEEEccccccccc-ccHHHHHHHHHHhcCCCceEEEeccCCCHHHHHHHHh
Q 004875 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-~d~ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~ 189 (726)
..++.-+.+.+..-. ...++++||||-+= |+.. .+.+..+.+.+....++..++++|||...+...+...
T Consensus 136 ~~~~~~l~~~l~~l~-~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~ 206 (270)
T PRK06731 136 VRDEAAMTRALTYFK-EEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 206 (270)
T ss_pred cCCHHHHHHHHHHHH-hcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHH
Confidence 123444544432210 11378999999998 5543 3444444433333456667889999986555544443
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.59 E-value=0.0091 Score=62.18 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM 68 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~ 68 (726)
+....++++..+..++.+++.||+|+|||+.+-.+....+.
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 44566777888888999999999999999877655443343
No 211
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.56 E-value=0.0012 Score=63.75 Aligned_cols=113 Identities=27% Similarity=0.333 Sum_probs=55.9
Q ss_pred EEEcCCCChHhHHHHHHHHhc---CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccc-------cccCCCCe
Q 004875 46 LIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-------KHLSERSK 115 (726)
Q Consensus 46 ii~a~TGSGKTt~ip~~lle~---~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~-------~~~~~~~~ 115 (726)
||+|+-|-|||+.+-..+... +..+|++|.|+..+++++.+.....+. ..||..... .....+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 689999999999887776443 234799999999988887776544332 123322100 01123677
Q ss_pred EEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
|.|..|.-+...- ...+++|||||= + +-..++++++... ..+++|.|+
T Consensus 76 i~f~~Pd~l~~~~-------~~~DlliVDEAA--a----Ip~p~L~~ll~~~---~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAEK-------PQADLLIVDEAA--A----IPLPLLKQLLRRF---PRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGG--G----S-HHHHHHHHCCS---SEEEEEEEB
T ss_pred EEEECCHHHHhCc-------CCCCEEEEechh--c----CCHHHHHHHHhhC---CEEEEEeec
Confidence 8888888774421 146899999997 3 3345556665443 366778886
No 212
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.55 E-value=0.03 Score=66.84 Aligned_cols=94 Identities=19% Similarity=0.228 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCC------CCcEEEEecCCCCHHHHHHHhhccCC----C
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------SFFKVHILHSSVDTEQALMAMKICKS----H 327 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~------~~~~v~~lh~~l~~~er~~~~~~f~~----~ 327 (726)
.+.+.+.+..+.... +|.+|||.|+....+.+.+.+...+ ....++. -+ -...++..+++.|+. +
T Consensus 507 ~~~l~~~i~~~~~~~---pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~-E~-~~~~~~~~~l~~f~~~~~~~ 581 (705)
T TIGR00604 507 VRNLGELLVEFSKII---PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFV-ET-KDAQETSDALERYKQAVSEG 581 (705)
T ss_pred HHHHHHHHHHHhhcC---CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEE-eC-CCcchHHHHHHHHHHHHhcC
Confidence 344445555555443 3799999999999998888776321 1112221 11 111456667777742 4
Q ss_pred c-EEEEEc--ccccccccCCC--eeEEEeCCCce
Q 004875 328 R-KVILAT--NIAESSVTIPK--VAYVIDSCRSL 356 (726)
Q Consensus 328 r-kVlvaT--niae~GIdip~--v~~VId~G~~k 356 (726)
+ -|++|+ ..+.+|||++| .+.||-.|++-
T Consensus 582 ~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 582 RGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred CceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 4 799999 89999999996 68888888874
No 213
>PF05729 NACHT: NACHT domain
Probab=96.54 E-value=0.011 Score=56.19 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=34.0
Q ss_pred eEEEEcccccccccccH-----HHHHHHHHHhc--CCCceEEEeccCCCHHHHHHHHh
Q 004875 139 KVIILDEVHERSVESDL-----VLVCVKQLLLK--KNDLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 139 ~~VIIDEaHeR~~~~d~-----ll~~lk~l~~~--~~~lklIlmSATl~~~~~~~~f~ 189 (726)
-++|||=+||-....+. ....++.++.. .++.++++.|.+-....+...+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC
Confidence 45899999975543332 45556666655 67899999888866555666554
No 214
>PRK06893 DNA replication initiation factor; Validated
Probab=96.51 E-value=0.011 Score=60.31 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=27.1
Q ss_pred CceeEEEEccccccccccc---HHHHHHHHHHhcCCCceEEEeccCCCHHHHH
Q 004875 136 LKYKVIILDEVHERSVESD---LVLVCVKQLLLKKNDLRVVLMSATADITKYR 185 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d---~ll~~lk~l~~~~~~lklIlmSATl~~~~~~ 185 (726)
.+++++||||+|....+.+ .+..++...... ..++|++|++..+..+.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~l~ 140 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHALS 140 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHHcc
Confidence 3779999999994322322 233334433221 23567788886555443
No 215
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.017 Score=64.46 Aligned_cols=39 Identities=36% Similarity=0.409 Sum_probs=25.3
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
.++.++|||||| .+..+....+++.+-.-. ..+++.-||
T Consensus 120 g~~KV~IIDEah--~Ls~~A~NALLKtLEEPp--~~viFILaT 158 (484)
T PRK14956 120 GKYKVYIIDEVH--MLTDQSFNALLKTLEEPP--AHIVFILAT 158 (484)
T ss_pred CCCEEEEEechh--hcCHHHHHHHHHHhhcCC--CceEEEeec
Confidence 378999999999 456666677777664322 344443444
No 216
>PRK05642 DNA replication initiation factor; Validated
Probab=96.49 E-value=0.011 Score=60.38 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHhHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~ 61 (726)
..+++.|++|+|||..+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5689999999999976433
No 217
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.49 E-value=0.032 Score=59.63 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHH---HhcCCCcE-EEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEE
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL---LAENMEPI-LCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l---le~~~~~I-ivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Ii 117 (726)
++++.++||+|+||||.+..+. ...+.... +-.-+.|.++......++...+. ++... .. ...+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~-~~--~~dp--- 181 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQ-KE--GADP--- 181 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEe-CC--CCCH---
Confidence 4678899999999998765553 23333322 33445566655555555555442 22111 00 0111
Q ss_pred EEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-------cCCCceEEEeccCCCHHHHH
Q 004875 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATADITKYR 185 (726)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-------~~~~lklIlmSATl~~~~~~ 185 (726)
.....+.+... ...+|++||||=+- |....+-++.-++.+.. ..|+-.+++++||...+.+.
T Consensus 182 ---a~~v~~~l~~~--~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~ 250 (318)
T PRK10416 182 ---ASVAFDAIQAA--KARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS 250 (318)
T ss_pred ---HHHHHHHHHHH--HhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH
Confidence 11112222211 12379999999998 66655555555544432 34666799999997554443
No 218
>PRK08116 hypothetical protein; Validated
Probab=96.44 E-value=0.037 Score=57.79 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
..+++.|++|+|||.++-.+
T Consensus 115 ~gl~l~G~~GtGKThLa~ai 134 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACI 134 (268)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34999999999999655443
No 219
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.44 E-value=0.016 Score=65.28 Aligned_cols=112 Identities=18% Similarity=0.211 Sum_probs=94.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc--EEEEEcccccccccCCCeeEEEeC
Q 004875 275 IEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATNIAESSVTIPKVAYVIDS 352 (726)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r--kVlvaTniae~GIdip~v~~VId~ 352 (726)
++.++|+|..-...+.-+.++|. ..++..+.|.|+....+|..++..|.... -.+++|-..+-||++-..+.||.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~--yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF- 1119 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLV--YRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF- 1119 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHH--hhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE-
Confidence 35689999988888888888887 45688999999999999999999997655 67889999999999999999998
Q ss_pred CCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
||...+...- .+|.-|+-|-|.++.-.+|||+++...
T Consensus 1120 -------YdSDWNPT~D-------~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1120 -------YDSDWNPTAD-------QQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred -------ecCCCCcchh-------hHHHHHHHhccCccceeeeeecccccH
Confidence 9888766544 466778888888888899999997644
No 220
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.44 E-value=0.0079 Score=58.71 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=20.4
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHH---HHhcCCCcEEE
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILC 73 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~---lle~~~~~Iiv 73 (726)
+.+++++++.|++|+|||.....+ +.+.+....++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 456789999999999999554333 44444433333
No 221
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.42 E-value=0.032 Score=62.56 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH----hcCCCc--EEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCe
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL----AENMEP--ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll----e~~~~~--Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~ 115 (726)
++++.++||||+||||.+..+.. ..+..+ ++-+-+.|+.+....+.+++.+|..+.. .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~-------------- 319 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--V-------------- 319 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--c--------------
Confidence 56889999999999988776652 333322 4445666788877777777766532210 0
Q ss_pred EEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEeccCCCHHHHHHHHh
Q 004875 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~-~~lklIlmSATl~~~~~~~~f~ 189 (726)
-+..-+...+. .+.++++++||.+= |+-....+...+..+.... +.-.+++++||.....+.+...
T Consensus 320 ---~~~~Dl~~aL~----~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~ 386 (484)
T PRK06995 320 ---KDAADLRLALS----ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQ 386 (484)
T ss_pred ---CCchhHHHHHH----hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHH
Confidence 00111111221 23477899999986 5433322223333222211 3337899999987666655443
No 222
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.34 E-value=0.014 Score=61.48 Aligned_cols=133 Identities=17% Similarity=0.268 Sum_probs=79.0
Q ss_pred CCCCCcHHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHHHH-----hcCCCcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 23 FSSLPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLL-----AENMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~ll-----e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
+.--|-...|.-+++.++.. .-|.+.|.-|||||......-+ ....++|+++-|. ..
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~----------------vp 287 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT----------------VP 287 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC----------------cC
Confidence 44467788999999999865 4578899999999955443333 2345689998772 25
Q ss_pred cCCeeeeeeccc-cccCCCC-----------eEEEEChHHHHHHHHhcCCCCC----------ceeEEEEcccccccccc
Q 004875 96 LGGEVGYHIGHS-KHLSERS-----------KIVFKTAGVLLDEMRDRGLNAL----------KYKVIILDEVHERSVES 153 (726)
Q Consensus 96 lg~~Vgy~v~~~-~~~~~~~-----------~Iiv~T~g~Ll~~l~~~~l~l~----------~~~~VIIDEaHeR~~~~ 153 (726)
+|..+||..+.+ .+..+.- ..-=|+.+.|-..+....+... .=.+||||||+ .+..
T Consensus 288 vG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQ--NLTp 365 (436)
T COG1875 288 VGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQ--NLTP 365 (436)
T ss_pred cccccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhh--ccCH
Confidence 677777775432 1111111 1122345555555444332211 34789999999 2332
Q ss_pred cHHHHHHHHHHh-cCCCceEEEecc
Q 004875 154 DLVLVCVKQLLL-KKNDLRVVLMSA 177 (726)
Q Consensus 154 d~ll~~lk~l~~-~~~~lklIlmSA 177 (726)
. -+|.++. ..+.-|+|++.-
T Consensus 366 h----eikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 366 H----ELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred H----HHHHHHHhccCCCEEEEcCC
Confidence 2 3333333 356678887553
No 223
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.021 Score=64.32 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=25.2
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++||||+| .+..+....++|.+-.-.+..++|+.+
T Consensus 115 ~~~KVvIIDEah--~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVH--MLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChH--hCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 489999999999 344444555666655444455566543
No 224
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.014 Score=69.30 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=27.1
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
.++.++|||||| .+..+....++|.+-.-...+++|+.
T Consensus 118 gk~KViIIDEAh--~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVH--MLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechH--hcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 478999999999 34566677777766554555666664
No 225
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.32 E-value=0.024 Score=57.98 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=16.5
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
..+++.||+|+|||+.+-.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~ 65 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAA 65 (235)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 68999999999999765443
No 226
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.30 E-value=0.029 Score=59.50 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=49.8
Q ss_pred HHHHHH-HHHcCCcEEEEcCCCChHhHHHHHHHHhc----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecc
Q 004875 32 REKIVE-KVLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (726)
Q Consensus 32 Q~~il~-~i~~~~~vii~a~TGSGKTt~ip~~lle~----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~ 106 (726)
+.+.+. ++..+.+++|+|+|||||||.+-.++-.- ...+|+++.-.... .......+.+..
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El------------~~~~~~~v~~~~-- 186 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL------------QCAAPNVVQLRT-- 186 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh------------cCCCCCEEEEEe--
Confidence 334444 45667899999999999998876554331 13455555432211 111112222221
Q ss_pred ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccc
Q 004875 107 SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (726)
Q Consensus 107 ~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH 147 (726)
..+. .|...+++...+ .+.+.||+.|+-
T Consensus 187 ----~~~~----~~~~~~l~~aLR-----~~pD~iivGEiR 214 (299)
T TIGR02782 187 ----SDDA----ISMTRLLKATLR-----LRPDRIIVGEVR 214 (299)
T ss_pred ----cCCC----CCHHHHHHHHhc-----CCCCEEEEeccC
Confidence 1111 166666665443 277999999995
No 227
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.025 Score=65.01 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=27.6
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
.+++++||||+| .++.+....+||.+-.-.++.++|+.|-
T Consensus 123 gr~KViIIDEah--~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVH--MLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChH--hcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 489999999999 3455566677776654445566666543
No 228
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.28 E-value=0.027 Score=62.69 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=65.8
Q ss_pred CcEEEEcCCCChHhHHHHHH---HHhcCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQF---LLAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~---lle~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
.+++++|++|+||||.+..+ +.+.+.. .++.+-+.|.++....+.++...+.++ |. .. ..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~-----~~-~~-----~~----- 159 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF-----YG-DP-----DN----- 159 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE-----Ee-cC-----Cc-----
Confidence 46889999999999776554 3344433 344455556666555555565544321 00 00 00
Q ss_pred ECh-HHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccCCCH
Q 004875 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADI 181 (726)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSATl~~ 181 (726)
..+ ..+.+.+.. ...+++||||.+- |.-..+-++.-++.+.. ..++.-+++++||...
T Consensus 160 ~d~~~i~~~al~~----~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 160 KDAVEIAKEGLEK----FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred cCHHHHHHHHHHH----hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 012 223333332 1245999999997 44433444444444432 3577788999998743
No 229
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.28 E-value=0.045 Score=60.55 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+++|.||+|+|||+.+-.++-+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999887666543
No 230
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.023 Score=64.65 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=26.0
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++|||||| ++..+....++|.+-.-.+..++|+.+
T Consensus 118 ~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 489999999999 344555666666555444456666543
No 231
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.24 E-value=0.02 Score=57.90 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..+++.||+|+|||+.+-.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35689999999999998765543
No 232
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.012 Score=68.16 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=26.2
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
.++.++|||||| .+..+....+||.+-.-.+..++|+.
T Consensus 118 g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 489999999999 34556667777765544445555554
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.23 E-value=0.056 Score=55.41 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=34.0
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCC-CceEEEeccCCCHHHHHHHHh
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~-~lklIlmSATl~~~~~~~~f~ 189 (726)
.+++++||||++.- ..+++-..++-.++..|- +.+-+++|.-++.+.+.+.++
T Consensus 161 ~~~dlLvIDDig~~-~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 161 SNVDLLVIDEIGVQ-TESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred ccCCEEEEeCCCCC-CCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 37899999999943 356666666665555442 234455555566677777665
No 234
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.21 E-value=0.018 Score=59.87 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
.++++.||+|+|||+.+-.+
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47899999999999765333
No 235
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.16 E-value=0.027 Score=60.22 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=26.3
Q ss_pred HHHHHHHH-HHHcCCcEEEEcCCCChHhHHHHHHHH
Q 004875 30 SLREKIVE-KVLENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 30 ~~Q~~il~-~i~~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
+.+.+.+. ++..+.+++|+|+|||||||.+-.++-
T Consensus 135 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 135 AAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH
Confidence 34556666 456788999999999999987755543
No 236
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.15 E-value=0.013 Score=64.92 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=57.3
Q ss_pred CCCCCcHHHHHHHHHHHHc--CCcEEEEcCCCChHhHHHHHHHHhcCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 23 FSSLPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~--~~~vii~a~TGSGKTt~ip~~lle~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
..+|...+.+.+.+..+.+ +.-++++|||||||||.+-.++-+.... .-++|. .+-
T Consensus 237 l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti---------------------EDP 295 (500)
T COG2804 237 LEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI---------------------EDP 295 (500)
T ss_pred HHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe---------------------eCC
Confidence 3567778888777777664 3568999999999998776666544332 113331 112
Q ss_pred eeeeecccccc--CCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccc
Q 004875 100 VGYHIGHSKHL--SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (726)
Q Consensus 100 Vgy~v~~~~~~--~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH 147 (726)
|-|.+..-.++ .++.. +|-...+|.+.+. +.++|+|.|+-
T Consensus 296 VE~~~~gI~Q~qVN~k~g---ltfa~~LRa~LRq-----DPDvImVGEIR 337 (500)
T COG2804 296 VEYQLPGINQVQVNPKIG---LTFARALRAILRQ-----DPDVIMVGEIR 337 (500)
T ss_pred eeeecCCcceeecccccC---CCHHHHHHHHhcc-----CCCeEEEeccC
Confidence 33333322222 22222 3555666665542 66899999995
No 237
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.14 E-value=0.019 Score=66.90 Aligned_cols=135 Identities=20% Similarity=0.223 Sum_probs=82.3
Q ss_pred CCCcHHHHHHHHHHHH---c--CCcEEEEcCCCChHhHHHHHH---HHhcC-CCcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 25 SLPVMSLREKIVEKVL---E--NRVTLIVGETGCGKSSQVPQF---LLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~---~--~~~vii~a~TGSGKTt~ip~~---lle~~-~~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
.+..++-|.++++.+. + .+.++|.|.-|=|||..+-.. +.... ...|+||.|...+++++.++.-+.+. .
T Consensus 209 ~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~-~ 287 (758)
T COG1444 209 ELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLE-F 287 (758)
T ss_pred hhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHH-H
Confidence 3566677777666543 2 348999999999999776633 33333 34899999999999888777654332 1
Q ss_pred cCC--eeeeeeccc--cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 004875 96 LGG--EVGYHIGHS--KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 96 lg~--~Vgy~v~~~--~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk 171 (726)
+|- .|.+....+ ....+...|-|.+|.... + .-++||||||= .+. +.+++++.... +
T Consensus 288 lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~-~---------~~DllvVDEAA--aIp----lplL~~l~~~~---~ 348 (758)
T COG1444 288 LGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ-E---------EADLLVVDEAA--AIP----LPLLHKLLRRF---P 348 (758)
T ss_pred hCCccccccccccceeeecCCceeEEeeCcchhc-c---------cCCEEEEehhh--cCC----hHHHHHHHhhc---C
Confidence 111 111111011 111234457788876543 1 25899999997 333 44455554432 5
Q ss_pred EEEeccCC
Q 004875 172 VVLMSATA 179 (726)
Q Consensus 172 lIlmSATl 179 (726)
.++||.|+
T Consensus 349 rv~~sTTI 356 (758)
T COG1444 349 RVLFSTTI 356 (758)
T ss_pred ceEEEeee
Confidence 68899997
No 238
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.027 Score=64.79 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=24.7
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++|||||| .+..+....++|.+-...+...+|+.+
T Consensus 117 gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 478999999999 344445555555554444455666543
No 239
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.03 Score=60.71 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=26.6
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
..+.+|||||||. ++......++|.+-.-.++..+|++|
T Consensus 140 g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 4889999999993 45556666777665544455555554
No 240
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.11 E-value=0.02 Score=59.66 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
..++|+||+|+||||.+-.+..+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4789999999999998887765543
No 241
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.021 Score=60.16 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=48.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh---c-C-CC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCe
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA---E-N-ME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle---~-~-~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~ 115 (726)
+++++++||||+||||.+..+... . + .. .++-+-|.|..+......++...+..+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~------------------ 255 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK------------------ 255 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee------------------
Confidence 357899999999999877665432 2 3 22 3455566666665555555554443210
Q ss_pred EEEEChHHHHHHHHhcCCCCCceeEEEEccc
Q 004875 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEV 146 (726)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEa 146 (726)
...++.-+.+.+.. +.++++|+||.+
T Consensus 256 -~~~~~~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 256 -VARDPKELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred -ccCCHHHHHHHHHH----ccCCCEEEEeCC
Confidence 01134445444442 236899999975
No 242
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.07 E-value=0.013 Score=65.76 Aligned_cols=63 Identities=27% Similarity=0.448 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHH---HHHHHHhcCCCcEEEecchHHHHHHHHHHHHh
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQ---VPQFLLAENMEPILCTQPRRFAVVAVAKMVAK 90 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~---ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~ 90 (726)
+...|..+++.++++...+|.||+|+|||.. +...+.+.....|+|+.|.-+|+.++|+.+.+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 5788999999999999999999999999933 33334555667999999999999999988754
No 243
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.042 Score=60.09 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=24.0
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++||||+|. +..+....+++.+-...+..++|+.+
T Consensus 118 ~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 4789999999993 33333445555554444455666643
No 244
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.05 E-value=0.026 Score=66.19 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=52.4
Q ss_pred CCcHHHHHHHHHHHHcC-CcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHh
Q 004875 26 LPVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAK 90 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~-~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~ 90 (726)
-.+.+.|.+++..+..+ ..++|.||+|+|||+.+..++.+. ...+|+++.|...|+..+.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999998876 788999999999997776655432 224788889999999999988876
No 245
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.04 E-value=0.019 Score=59.29 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=27.4
Q ss_pred CCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 135 ALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 135 l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
...+.+||+|||| ++..|....+.|.+-......++|+.+--
T Consensus 127 ~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 127 CPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 3478999999999 56666666665555443444566654433
No 246
>PRK09183 transposase/IS protein; Provisional
Probab=96.04 E-value=0.039 Score=57.29 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=20.8
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+.++.++++.||+|+|||+....+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 5678899999999999997765553
No 247
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.02 E-value=0.05 Score=71.33 Aligned_cols=136 Identities=14% Similarity=0.168 Sum_probs=80.7
Q ss_pred CCCcHHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHH--HHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 25 SLPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQF--LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~--lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
.+++.+-|.+++..+..+ +..+|.|+.|+||||.+-.. +++.....|++..|..-++..+.+. .|..-.. +
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~----~g~~A~T-i 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQK----IPRLAST-F 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH----hcchhhh-H
Confidence 578899999999998764 79999999999999776544 3444334566666665565554432 2211100 0
Q ss_pred eeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 101 gy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
. ++-...... ....|...++ .....+...++|||||+- ++++..+..+++... ..+.|+|++.=+
T Consensus 502 ~---~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~--~~garvVlvGD~ 566 (1960)
T TIGR02760 502 I---TWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAE--QHNSKLILLNDS 566 (1960)
T ss_pred H---HHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHh--hcCCEEEEEcCh
Confidence 0 000000000 0112222333 122234478999999998 777777777776554 345788887755
No 248
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.02 E-value=0.068 Score=62.97 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=25.5
Q ss_pred CCCCcHHHHHHHHHHHH-----cC---CcEEEEcCCCChHhHHHHHHH
Q 004875 24 SSLPVMSLREKIVEKVL-----EN---RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~-----~~---~~vii~a~TGSGKTt~ip~~l 63 (726)
..||-++-|.+-+..+. .. +.+.|.|+||+|||+.+-..+
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 45777766655444332 11 234699999999997665543
No 249
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.01 E-value=0.066 Score=55.95 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=68.2
Q ss_pred CcEEEEcCCCChHhHHHHHH---HHhcCCCc-EEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQF---LLAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~---lle~~~~~-Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
+.++++|++|+||||.+..+ +.+.+.+. ++-+-+.|.+++...+.++..++..+ + .... ..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~--~~~~----~~------ 137 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---I--KQKE----GA------ 137 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---E--eCCC----CC------
Confidence 57888999999999776554 33344332 33345667776666666666554221 0 0000 00
Q ss_pred ECh-HHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-------cCCCceEEEeccCCCHHHHH
Q 004875 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATADITKYR 185 (726)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-------~~~~lklIlmSATl~~~~~~ 185 (726)
-| ....+.+... ...+|++||||=+- |......++.-++.+.. ..++-.+++++||...+.+.
T Consensus 138 -dp~~~~~~~l~~~--~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 138 -DPAAVAFDAIQKA--KARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred -CHHHHHHHHHHHH--HHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH
Confidence 12 2222322221 12379999999998 55433333433433332 12677899999997554443
No 250
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.01 E-value=0.014 Score=58.29 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHhHHH
Q 004875 43 RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~i 59 (726)
.++++.||+|+||||..
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 37899999999999753
No 251
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.99 E-value=0.036 Score=50.55 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.6
Q ss_pred EEEEcCCCChHhHHHHHHHH
Q 004875 45 TLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 45 vii~a~TGSGKTt~ip~~ll 64 (726)
+++.||.|+|||+.+-.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999986544433
No 252
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.011 Score=61.05 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCCC--ceeEEEEccccc
Q 004875 122 GVLLDEMRDRGLNAL--KYKVIILDEVHE 148 (726)
Q Consensus 122 g~Ll~~l~~~~l~l~--~~~~VIIDEaHe 148 (726)
.+++++++....+.. .-+.|.|||+|.
T Consensus 145 NillkLlqaadydV~rAerGIIyIDEIDK 173 (408)
T COG1219 145 NILLKLLQAADYDVERAERGIIYIDEIDK 173 (408)
T ss_pred HHHHHHHHHcccCHHHHhCCeEEEechhh
Confidence 478888876544433 678999999993
No 253
>PRK06921 hypothetical protein; Provisional
Probab=95.91 E-value=0.052 Score=56.56 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.+..+++.|+||+|||+++-.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~ai 137 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAA 137 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 3578999999999999765444
No 254
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.048 Score=62.28 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=24.5
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++||||||. ++.+....+++.+-.-.+...+|+.+
T Consensus 118 g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 4889999999993 34445555555554433455566544
No 255
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.90 E-value=0.035 Score=66.61 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=26.3
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.+++++||||+|. +..+....++|.+-.-.....+|+.+
T Consensus 119 ~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 4899999999993 44455556666655545556666654
No 256
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.87 E-value=0.017 Score=61.37 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHH---HHhcC---CCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~---lle~~---~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
+++-|.+++.. .++.++|.|..|||||+.+..- ++..+ ...|+|+...+.+|..+..|+...++........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 35678888887 6788999999999999766543 34443 2479998888999999999888754322100000
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcC-CCC-CceeEEEEcccc
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRG-LNA-LKYKVIILDEVH 147 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-l~l-~~~~~VIIDEaH 147 (726)
-. ...........+.++|-..+...+.... ... .....-|+|+..
T Consensus 79 ~~-~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 79 NE-RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -H-HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc-cccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 0001111234567888766555443211 111 133455666665
No 257
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.84 E-value=0.054 Score=62.80 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=26.2
Q ss_pred CCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 135 ALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 135 l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
..++.+|||||+|. +..+....++|.+-.-.+...+|+.+
T Consensus 130 ~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 34899999999993 34444555566554444566677654
No 258
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.80 E-value=0.038 Score=62.66 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=19.4
Q ss_pred HHcCC---cEEEEcCCCChHhHHHHHHHH
Q 004875 39 VLENR---VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 39 i~~~~---~vii~a~TGSGKTt~ip~~ll 64 (726)
+.+++ .++++||.|+||||.+-.+..
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 44554 689999999999987655543
No 259
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.058 Score=61.83 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=25.6
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++||||+|. +..+....++|.+-..++...+|+.+
T Consensus 118 ~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 4899999999993 33344555666665544556666654
No 260
>PHA00729 NTP-binding motif containing protein
Probab=95.79 E-value=0.028 Score=56.56 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=19.4
Q ss_pred HHHHHHcC--CcEEEEcCCCChHhHHHHH
Q 004875 35 IVEKVLEN--RVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 35 il~~i~~~--~~vii~a~TGSGKTt~ip~ 61 (726)
+++.+..+ .+++|.|++|+|||+....
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 44555443 4799999999999985433
No 261
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.77 E-value=0.047 Score=58.25 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=30.6
Q ss_pred HHHHHHHHHH-HHcCCcEEEEcCCCChHhHHHHHHHHhc----CCCcEEEec
Q 004875 29 MSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQ 75 (726)
Q Consensus 29 ~~~Q~~il~~-i~~~~~vii~a~TGSGKTt~ip~~lle~----~~~~Iivt~ 75 (726)
.+.|.+.+.. +..+.+++|+|+|||||||.+-..+-.- ...+++...
T Consensus 130 ~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 130 TEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 3445555554 5567899999999999998875544322 223555554
No 262
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.77 E-value=0.071 Score=57.49 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCC--cEEEEcCCCChHhHHHHHHHHh
Q 004875 31 LREKIVEKVLENR--VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 31 ~Q~~il~~i~~~~--~vii~a~TGSGKTt~ip~~lle 65 (726)
....+...+..++ .+++.||+|+|||+.+-.+..+
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3334444455555 7999999999999877665443
No 263
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.77 E-value=0.16 Score=58.57 Aligned_cols=140 Identities=12% Similarity=0.138 Sum_probs=84.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHH---HHhcCCCcEEEecchHHHHHHHHHHHHhhcC---C-----ccCCeeeee-----e
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRN---C-----ELGGEVGYH-----I 104 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~---lle~~~~~Iivt~Prrlaa~~~a~~va~~~~---~-----~lg~~Vgy~-----v 104 (726)
+.+-.++.+|=|.|||+.+..+ ++......|++|.|+.-.+.++.+++...+. . ..+..+... +
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~I 265 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDENL 265 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeEE
Confidence 4477899999999999665543 2321235899999988888887777655442 0 111111111 0
Q ss_pred cccc--ccC-CCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCH
Q 004875 105 GHSK--HLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (726)
Q Consensus 105 ~~~~--~~~-~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~ 181 (726)
.+.. ... ..+.|.|++-+ .+...-..++++|||||+ .+..+.+..++--+.. .+-++|++|.+-+.
T Consensus 266 ~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAA--fI~~~~l~aIlP~l~~--~~~k~IiISS~~~~ 334 (752)
T PHA03333 266 EYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAA--FVNPGALLSVLPLMAV--KGTKQIHISSPVDA 334 (752)
T ss_pred EEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcc--cCCHHHHHHHHHHHcc--CCCceEEEeCCCCc
Confidence 0100 001 11455554432 122222368999999999 3555666665544433 36789999999888
Q ss_pred HHHHHHHhhc
Q 004875 182 TKYRDYFRDL 191 (726)
Q Consensus 182 ~~~~~~f~~~ 191 (726)
+.+..+..++
T Consensus 335 ~s~tS~L~nL 344 (752)
T PHA03333 335 DSWISRVGEV 344 (752)
T ss_pred chHHHHhhhh
Confidence 8888777664
No 264
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.76 E-value=0.029 Score=65.06 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=26.4
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++++|||||+|. +..+....++|.+-...+..++|+.+
T Consensus 118 gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4889999999993 44445556666665555566676655
No 265
>PHA02244 ATPase-like protein
Probab=95.72 E-value=0.11 Score=56.00 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=31.1
Q ss_pred CCcH-HHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCC
Q 004875 26 LPVM-SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM 68 (726)
Q Consensus 26 LPi~-~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~ 68 (726)
-|.. .....+...+..+..+++.||||+|||+.+-.+....+.
T Consensus 102 sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 102 NPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444 345566667778899999999999999877666554443
No 266
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.71 E-value=0.075 Score=55.53 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHc---------CCcEEEEcCCCChHhHHHHHHHHhcCCC--------cEEEecc-hHHHHHHHHHHHHh
Q 004875 29 MSLREKIVEKVLE---------NRVTLIVGETGCGKSSQVPQFLLAENME--------PILCTQP-RRFAVVAVAKMVAK 90 (726)
Q Consensus 29 ~~~Q~~il~~i~~---------~~~vii~a~TGSGKTt~ip~~lle~~~~--------~Iivt~P-rrlaa~~~a~~va~ 90 (726)
|+.-.++++.+.+ -.+++|+|+||-|||+.+-.|.-.+... .|+++|. -.--...++..+-.
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 3445556665542 2589999999999999998887654321 3554432 22223344555555
Q ss_pred hcCCc
Q 004875 91 GRNCE 95 (726)
Q Consensus 91 ~~~~~ 95 (726)
.++.+
T Consensus 119 ~lgaP 123 (302)
T PF05621_consen 119 ALGAP 123 (302)
T ss_pred HhCcc
Confidence 55544
No 267
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.68 E-value=0.14 Score=58.82 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+.++|.|++|+|||.++-.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AI 334 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAI 334 (617)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 35899999999999765443
No 268
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.67 E-value=0.052 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
++.+++.||+|+|||+.+-.+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~ 63 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALV 63 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4679999999999997665443
No 269
>PRK09087 hypothetical protein; Validated
Probab=95.67 E-value=0.096 Score=53.19 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHhHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~ 61 (726)
++.++|.||+|||||+++-.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 34599999999999987653
No 270
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.65 E-value=0.056 Score=54.31 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=65.1
Q ss_pred CCCCcHHHHHHHHHHHHc---CCcEEEEcCCCChHhHH-HHHHH--HhcCCCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 24 SSLPVMSLREKIVEKVLE---NRVTLIVGETGCGKSSQ-VPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~---~~~vii~a~TGSGKTt~-ip~~l--le~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.++=|++.|.++...+.+ +++.+...-.|.|||+. +|... +.++.+-+.++.|..++-+ ....+...++.-++
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q-~~~~L~~~lg~l~~ 98 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQ-MRQMLRSRLGGLLN 98 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHH-HHHHHHHHHHHHhC
Confidence 567789999999999875 47899999999999954 45543 3444455666777666533 34444443333333
Q ss_pred CeeeeeeccccccC-----------------CCCeEEEEChHHHHHH
Q 004875 98 GEVGYHIGHSKHLS-----------------ERSKIVFKTAGVLLDE 127 (726)
Q Consensus 98 ~~Vgy~v~~~~~~~-----------------~~~~Iiv~T~g~Ll~~ 127 (726)
..| |...|+.... ....|+++||+.++..
T Consensus 99 r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 99 RRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred Cee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 322 4445543321 2456999999988754
No 271
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.64 E-value=0.058 Score=58.97 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccc
Q 004875 445 LDPPYPEVVGDALDLLDHKRALQK 468 (726)
Q Consensus 445 l~pP~~~~i~~al~~L~~lgal~~ 468 (726)
++|.....+.+.++.|..+|.|+.
T Consensus 326 ~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 457777888899999999999875
No 272
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.56 E-value=0.062 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=18.8
Q ss_pred cEEEEcCCCChHhHHHHHHHHhc
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~ 66 (726)
.++|.|++|+|||+.+..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999887776554
No 273
>CHL00181 cbbX CbbX; Provisional
Probab=95.50 E-value=0.06 Score=56.80 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
.++++.||+|+|||+..-.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999765443
No 274
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.49 E-value=0.15 Score=57.11 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHhHHHH
Q 004875 43 RVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip 60 (726)
+.+++.||+|+|||+++-
T Consensus 131 n~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CeEEEEcCCCCcHHHHHH
Confidence 458999999999997654
No 275
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.45 E-value=0.074 Score=59.62 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+++.||+|+|||+++-.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai 161 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAA 161 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 45899999999999765443
No 276
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.44 E-value=0.079 Score=65.29 Aligned_cols=127 Identities=16% Similarity=0.268 Sum_probs=63.7
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecc------hHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCC
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQP------RRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSE 112 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~P------rrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~ 112 (726)
....+.++|+||.|+||||.+.+++...+ ..++++-. .+. ...+...+..... .. + ........
T Consensus 29 ~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f-~~~l~~~l~~~~~----~~-~---~~~~~~~~ 98 (903)
T PRK04841 29 ANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERF-ASYLIAALQQATN----GH-C---SKSEALAQ 98 (903)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHH-HHHHHHHHHHhcC----cc-c---chhhhhhc
Confidence 33557899999999999999999986655 44555432 111 1222222221110 00 0 00000000
Q ss_pred CCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc-CCCceEEEeccCC
Q 004875 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATA 179 (726)
Q Consensus 113 ~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~-~~~lklIlmSATl 179 (726)
.. -..+...++..+...-.....--+||||++|. ++.......+..++.. ++.+++|+.|-+.
T Consensus 99 ~~--~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~--~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 99 KR--QYASLSSLFAQLFIELADWHQPLYLVIDDYHL--ITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred cC--CcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCc--CCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 00 01122223322221100112557899999993 3444445455555554 5678888888774
No 277
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.41 E-value=0.27 Score=52.33 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCC
Q 004875 32 REKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME 69 (726)
Q Consensus 32 Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~ 69 (726)
-..++..+..++.+++.|++|+|||+.+-++....+..
T Consensus 54 ~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 54 TKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred HHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 34567777788999999999999999887776665544
No 278
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.40 E-value=0.056 Score=60.11 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+++.|++|+|||+++-.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai 156 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAI 156 (405)
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 35799999999999765433
No 279
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.068 Score=61.64 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=26.4
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++||||+| .+..+....++|.+-.-.+...+|+.+
T Consensus 117 ~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 489999999999 345556666666665544455566544
No 280
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.29 E-value=0.12 Score=58.41 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHcCC---cEEEEcCCCChHhHHHHHHHH
Q 004875 38 KVLENR---VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 38 ~i~~~~---~vii~a~TGSGKTt~ip~~ll 64 (726)
.+.+++ .++++||+|+||||.+-.+..
T Consensus 29 ~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 29 ALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 369999999999987655543
No 281
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.27 E-value=0.079 Score=59.53 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+.++|.|++|+|||+++-.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai 161 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAA 161 (450)
T ss_pred CceEEECCCCCcHHHHHHHH
Confidence 45899999999999766333
No 282
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.27 E-value=0.058 Score=59.60 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 30 ~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
...+.++.++..++++++.|++|+|||+.+-.+.
T Consensus 182 ~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 182 TTIETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 3556788888899999999999999998775543
No 283
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.068 Score=61.94 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=24.7
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++||||+| .+..+-...++|.+-.-.+...+|+.+
T Consensus 123 g~~KV~IIDEvh--~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVH--MLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChh--hCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 479999999999 344555555565554433445565544
No 284
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.26 E-value=0.023 Score=63.50 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHcC-CcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHH
Q 004875 28 VMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVA 89 (726)
Q Consensus 28 i~~~Q~~il~~i~~~-~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va 89 (726)
+.+.|.+++....++ ...+|.||+|+|||+.+..++... ...+|+|+.|..+++..+..|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 567899999988877 567999999999995555554432 23589999999999888777654
No 285
>PLN03025 replication factor C subunit; Provisional
Probab=95.24 E-value=0.13 Score=55.18 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.9
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
.++++.||+|+|||+.+-.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998665543
No 286
>PRK12377 putative replication protein; Provisional
Probab=95.20 E-value=0.33 Score=49.98 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCChHhHHHHHH---HHhcCCCcEEEe
Q 004875 42 NRVTLIVGETGCGKSSQVPQF---LLAENMEPILCT 74 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~---lle~~~~~Iivt 74 (726)
...+++.|++|+|||+++..+ +.+.+...++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 368999999999999654433 444444333333
No 287
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.17 E-value=0.39 Score=50.50 Aligned_cols=126 Identities=20% Similarity=0.249 Sum_probs=73.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh--cCCCc-EEE-----ecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCC
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA--ENMEP-ILC-----TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSE 112 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle--~~~~~-Iiv-----t~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~ 112 (726)
+.+.++++||-|||||+.+--.+.+ ..... ++| .+.-++|...++..++.++... +..+|- +..
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs---fte---- 119 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS---FTE---- 119 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc---cch----
Confidence 4578999999999999776666555 22222 222 3446778888888888776532 111220 000
Q ss_pred CCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccc--ccccHHHHHHHHHHhcCCCceEEEeccCCCH
Q 004875 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERS--VESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (726)
Q Consensus 113 ~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~--~~~d~ll~~lk~l~~~~~~lklIlmSATl~~ 181 (726)
+-..|+..+..+.-.-..--++|+||+|--. .+.-.+..++......+..+-+|++|..+|.
T Consensus 120 -------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 120 -------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred -------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 1134555555543322233567888988211 1112344445555556777889999888874
No 288
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.16 E-value=0.043 Score=52.66 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=29.9
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
..+.++|||||| .+..+...+++|.+-.-..+..+|++|-.+
T Consensus 101 ~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 479999999999 466677777777776555567777666553
No 289
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.13 E-value=0.26 Score=54.51 Aligned_cols=128 Identities=17% Similarity=0.258 Sum_probs=70.5
Q ss_pred CcEEEEcCCCChHhHHHHHH---HHhcCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQF---LLAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~---lle~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
.++.++|++|+||||.+..+ +...+.+ .++.+-|.|.+|....+..+...+.++ +.... . .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~-----~~~~~-----~-~---- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPF-----YGSYT-----E-S---- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeE-----EeecC-----C-C----
Confidence 46889999999999776554 3334443 344456667666655555555443221 11000 0 0
Q ss_pred ECh-HHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEeccCC--CHHHHHHHHh
Q 004875 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATA--DITKYRDYFR 189 (726)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~-~~~~~lklIlmSATl--~~~~~~~~f~ 189 (726)
.| .+..+.+..- .-.++++||||=+- |.-..+-++.-++.+. ...|+..+++++||. +.....+-|.
T Consensus 166 -dp~~i~~~~l~~~--~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 166 -DPVKIASEGVEKF--KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred -CHHHHHHHHHHHH--HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 12 1222222211 01278999999998 5544344444444443 345777899999996 3344455554
No 290
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.12 E-value=0.11 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.0
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..+.+++|+|+|||||||.+-.++
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHH
Confidence 4577899999999999999875554
No 291
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.14 Score=60.13 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=23.3
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++||||||. +..+....+++.+-.-++...+|+.+
T Consensus 117 g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 5899999999993 34445555555554333334444433
No 292
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.096 Score=58.02 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=18.7
Q ss_pred HHHHcCC---cEEEEcCCCChHhHHHHHH
Q 004875 37 EKVLENR---VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 37 ~~i~~~~---~vii~a~TGSGKTt~ip~~ 62 (726)
.++.+++ .++++||.|+||||..-.+
T Consensus 30 ~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 30 NSLRMGRVGHGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred HHHHhCCcceeEEEECCCCCCHHHHHHHH
Confidence 3444543 4889999999999866554
No 293
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.13 Score=56.75 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=66.8
Q ss_pred cEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEEChHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGV 123 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~ 123 (726)
.+++.||.|||||++..++.+.....-|=++.|+.+.-.+-..+++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~--------------------------------- 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAH--------------------------------- 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHH---------------------------------
Confidence 68999999999999999998888887777777755432222222211
Q ss_pred HHHHHHhcCCCCCceeEEEEccccccccc--------ccHHHHHHHHHHhcCCC--ceEEEeccCCCHHH
Q 004875 124 LLDEMRDRGLNALKYKVIILDEVHERSVE--------SDLVLVCVKQLLLKKND--LRVVLMSATADITK 183 (726)
Q Consensus 124 Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~--------~d~ll~~lk~l~~~~~~--lklIlmSATl~~~~ 183 (726)
+.+.+. +. .-+..++||+|++. |.++ +...+..|..++++.|. -|++++.-|-..+.
T Consensus 587 i~k~F~-DA-YkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 587 IKKIFE-DA-YKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred HHHHHH-Hh-hcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHH
Confidence 111111 11 11367899999997 6655 35567777777776554 47877777754443
No 294
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.04 E-value=0.37 Score=51.32 Aligned_cols=110 Identities=15% Similarity=0.246 Sum_probs=57.0
Q ss_pred CCcEEEEcCCCChHhHHHHHH---HHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 42 NRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~---lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
++.+++.|++|+|||+++..+ +.+.+....++..|. + ...+....+ .+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~-l-----~~~lk~~~~------------------~~----- 206 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE-F-----IRELKNSIS------------------DG----- 206 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH-H-----HHHHHHHHh------------------cC-----
Confidence 468999999999999665444 334444445555442 1 111111110 00
Q ss_pred EChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHH-HHHHHHHhcC-CCceEEEeccCCCHHHHHHHHh
Q 004875 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL-VCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll-~~lk~l~~~~-~~lklIlmSATl~~~~~~~~f~ 189 (726)
+....++. +.+++++||||+.--. .+++.. .++..++..| .+-+-.++|.-++.+.+.++|.
T Consensus 207 -~~~~~l~~-------l~~~dlLiIDDiG~e~-~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 207 -SVKEKIDA-------VKEAPVLMLDDIGAEQ-MSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 270 (306)
T ss_pred -cHHHHHHH-------hcCCCEEEEecCCCcc-ccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence 11112221 3388999999998322 233332 3444443332 1223344555567777777774
No 295
>PRK10867 signal recognition particle protein; Provisional
Probab=95.03 E-value=0.12 Score=57.37 Aligned_cols=119 Identities=15% Similarity=0.233 Sum_probs=67.4
Q ss_pred CcEEEEcCCCChHhHHHHHHH---Hhc-CCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEE
Q 004875 43 RVTLIVGETGCGKSSQVPQFL---LAE-NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l---le~-~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Ii 117 (726)
.+++++|++|+||||.+..+. ... +.. .++.+-++|.++....+.++...+.++ |... ..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~~~------~~---- 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FPSG------DG---- 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----EecC------CC----
Confidence 468899999999998765553 334 433 456677788877655555666544331 1100 00
Q ss_pred EEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccCC
Q 004875 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATA 179 (726)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSATl 179 (726)
..|.-+........ ...++++||||=+= |.-..+-+..-+..+.. ..|+--+++++|+.
T Consensus 166 -~dp~~i~~~a~~~a-~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 -QDPVDIAKAALEEA-KENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred -CCHHHHHHHHHHHH-HhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 12333333222110 12378999999998 54433444444443332 34555688888986
No 296
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.03 E-value=0.088 Score=53.22 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=24.5
Q ss_pred CceeEEEEccccccccc---ccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 136 LKYKVIILDEVHERSVE---SDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~---~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
..+++++||++|.-.-. .+.+..++..+... +-++|+.|..
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~ 139 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDR 139 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCC
Confidence 37899999999942222 13444555555443 3467766655
No 297
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.28 Score=50.75 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=26.3
Q ss_pred HHHHHHcCCcEEEEcCCCChHhHHHHHH---HHhcCCCcEEEecc
Q 004875 35 IVEKVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQP 76 (726)
Q Consensus 35 il~~i~~~~~vii~a~TGSGKTt~ip~~---lle~~~~~Iivt~P 76 (726)
..+.+.++.++++.|++|+|||.++..+ +...+...++++.|
T Consensus 98 ~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 98 LVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred HHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3334457789999999999999554333 33334444444443
No 298
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.17 Score=58.40 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=19.5
Q ss_pred HHHHHcC---CcEEEEcCCCChHhHHHHHHH
Q 004875 36 VEKVLEN---RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 36 l~~i~~~---~~vii~a~TGSGKTt~ip~~l 63 (726)
-.++.++ +.+++.||.|+|||+..-.+.
T Consensus 29 ~~ai~~~ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 29 SRAAQENRVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred HHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3344454 357899999999998665443
No 299
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.89 E-value=0.068 Score=53.86 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=25.4
Q ss_pred HHHHHHHHc--CCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 33 EKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 33 ~~il~~i~~--~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+++.+.+.+ ++.++|.||.|+|||+.+-.++-..
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 445555555 4789999999999999877766554
No 300
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.85 E-value=0.21 Score=48.33 Aligned_cols=120 Identities=17% Similarity=0.292 Sum_probs=59.5
Q ss_pred cEEEEcCCCChHhHHHHHHHH---hcCCCc-EEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEE
Q 004875 44 VTLIVGETGCGKSSQVPQFLL---AENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll---e~~~~~-Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~ 119 (726)
.+++.|++|+||||....+.. +.+.+. ++-+.+++........+++...+..+ . ... .. .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~------~-~~~----~~-----~ 65 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPV------F-EEG----EG-----K 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEE------E-ecC----CC-----C
Confidence 478999999999987665543 333322 23345655544333333333222111 0 000 00 0
Q ss_pred ChHHHH-HHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccCCCHH
Q 004875 120 TAGVLL-DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADIT 182 (726)
Q Consensus 120 T~g~Ll-~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSATl~~~ 182 (726)
.+..++ +.+... ...++++||||...-...+.+. +..++.+.. ..++-.+++++|....+
T Consensus 66 ~~~~~~~~~~~~~--~~~~~d~viiDt~g~~~~~~~~-l~~l~~l~~~~~~~~~~lVv~~~~~~~ 127 (173)
T cd03115 66 DPVSIAKRAIEHA--REENFDVVIVDTAGRLQIDENL-MEELKKIKRVVKPDEVLLVVDAMTGQD 127 (173)
T ss_pred CHHHHHHHHHHHH--HhCCCCEEEEECcccchhhHHH-HHHHHHHHhhcCCCeEEEEEECCCChH
Confidence 122222 222211 1137899999999933333333 333344433 24677788888875443
No 301
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.83 E-value=0.084 Score=64.68 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=91.5
Q ss_pred cEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC--c-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 278 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH--R-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~--r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
++|+|.+-.....-+...+...+ +....++|+++..+|...++.|..+ . -++++|-.++.|+|.-....||.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~--~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~--- 787 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG--IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL--- 787 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC--CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE---
Confidence 89999999999998888888554 7889999999999999999999764 3 67778889999999999999998
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
||+..+.... .+|..|+-|.|+.++=.+|++.++...
T Consensus 788 -----~d~~wnp~~~-------~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 788 -----FDPWWNPAVE-------LQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred -----eccccChHHH-------HHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 9998776555 456667777777788889999987654
No 302
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.79 E-value=0.11 Score=54.86 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHhHHH
Q 004875 43 RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~i 59 (726)
..+++.||+|+|||+..
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 37899999999999755
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.78 E-value=0.3 Score=57.25 Aligned_cols=135 Identities=19% Similarity=0.305 Sum_probs=67.7
Q ss_pred HHHHHHHHHHc---CCcEEEEcCCCChHhHHHHHHH--HhcCCCcEEEe------cchHHHHHHHHHHHHhhcCCccCCe
Q 004875 31 LREKIVEKVLE---NRVTLIVGETGCGKSSQVPQFL--LAENMEPILCT------QPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 31 ~Q~~il~~i~~---~~~vii~a~TGSGKTt~ip~~l--le~~~~~Iivt------~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
.+..++..+.+ .+.++|++|-|+||||.+.++. ...+....++. .|-|.. ..+...+.+-.. ..|+.
T Consensus 23 ~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~-~yLi~al~~~~p-~~~~~ 100 (894)
T COG2909 23 VRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFL-SYLIAALQQATP-TLGDE 100 (894)
T ss_pred ccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHH-HHHHHHHHHhCc-cccHH
Confidence 34566666664 4789999999999999999996 33333333332 333332 111111211111 11111
Q ss_pred eeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccC
Q 004875 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSAT 178 (726)
Q Consensus 100 Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSAT 178 (726)
.. .+.+..+ +..-..+++.+..+--...+.=++|+|+-| +.-+ .++..-++.+++ .++++.+|+.|=+
T Consensus 101 a~-~l~q~~~--------~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH-li~~-~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 101 AQ-TLLQKHQ--------YVSLESLLSSLLNELASYEGPLYLVLDDYH-LISD-PALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HH-HHHHhcc--------cccHHHHHHHHHHHHHhhcCceEEEecccc-ccCc-ccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 11 1111111 111122333332210011245689999999 4444 445555555554 4667899998865
No 304
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.77 E-value=0.25 Score=55.79 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.9
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+++.||+|+|||+++-.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai 168 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAI 168 (450)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45899999999999765443
No 305
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.77 E-value=0.21 Score=53.41 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCC---cEEEEcCCCChHhHHHHHHH
Q 004875 32 REKIVEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 32 Q~~il~~i~~~~---~vii~a~TGSGKTt~ip~~l 63 (726)
...+...+.+++ .+++.||+|+|||+.+-.+.
T Consensus 30 ~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~ 64 (316)
T PHA02544 30 KETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALC 64 (316)
T ss_pred HHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHH
Confidence 334444455553 44558999999998765543
No 306
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.75 E-value=0.22 Score=48.88 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=21.1
Q ss_pred HHHHHHHcC---CcEEEEcCCCChHhHHHHHH
Q 004875 34 KIVEKVLEN---RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 34 ~il~~i~~~---~~vii~a~TGSGKTt~ip~~ 62 (726)
.+...+.++ +.+++.||+|+|||+.+-.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~ 34 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALAL 34 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 345556665 45899999999999765544
No 307
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.086 Score=61.39 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=20.2
Q ss_pred HHHHHHcCC---cEEEEcCCCChHhHHHHHHH
Q 004875 35 IVEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 35 il~~i~~~~---~vii~a~TGSGKTt~ip~~l 63 (726)
+...+.+++ .+|++||.|+|||+.+-.+.
T Consensus 28 L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 28 LRNAIAEGRVAHAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHH
Confidence 333445553 45999999999998765554
No 308
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.70 E-value=0.21 Score=56.85 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=26.6
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++|||||| .+..+....+++.+-.-++..++|+.+
T Consensus 116 ~~~KVvIIDEad--~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVH--MLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcc--cCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 489999999999 344556666666665544556666654
No 309
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.67 E-value=0.12 Score=59.39 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=19.7
Q ss_pred HHHHHHcC---CcEEEEcCCCChHhHHHHHH
Q 004875 35 IVEKVLEN---RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 35 il~~i~~~---~~vii~a~TGSGKTt~ip~~ 62 (726)
+..++.++ +.++++||.|+|||+.+-.+
T Consensus 28 L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 28 LVNAILNNKLTHAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 34444444 45799999999999766554
No 310
>PHA02533 17 large terminase protein; Provisional
Probab=94.65 E-value=0.74 Score=52.83 Aligned_cols=157 Identities=14% Similarity=0.138 Sum_probs=87.2
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH----hcCCCcEEEecchHHHHHHHHHHHHhhcCC-ccCCe
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNC-ELGGE 99 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll----e~~~~~Iivt~Prrlaa~~~a~~va~~~~~-~lg~~ 99 (726)
.+++.+.|.+++..+..++-.++.-+=..|||+.+..+.+ ......++++.|.+-.|..+.+++...... +--..
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~ 136 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQ 136 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhh
Confidence 4889999999999987777778889999999977764432 223347888888877777776666532211 00000
Q ss_pred eeeee--ccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 100 VGYHI--GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 100 Vgy~v--~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
.+... ...-....+..|.+.|..- +...-.+++++|+||+|...-..++... +...+......++++.|.
T Consensus 137 ~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~~~e~~~a-i~p~lasg~~~r~iiiST 208 (534)
T PHA02533 137 PGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPNFIDFWLA-IQPVISSGRSSKIIITST 208 (534)
T ss_pred cceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCCHHHHHHH-HHHHHHcCCCceEEEEEC
Confidence 11100 0001113456665655321 1111226788999999953222233333 333334434456766666
Q ss_pred CCCHHHHHHHHh
Q 004875 178 TADITKYRDYFR 189 (726)
Q Consensus 178 Tl~~~~~~~~f~ 189 (726)
.-....|-+.+.
T Consensus 209 p~G~n~fye~~~ 220 (534)
T PHA02533 209 PNGLNHFYDIWT 220 (534)
T ss_pred CCchhhHHHHHH
Confidence 643333444443
No 311
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.12 Score=60.06 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=24.5
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.++||||+| .+..+....++|.+-.-.+...+|+.+
T Consensus 118 ~~~KVvIIdev~--~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVH--MLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChh--hCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 489999999999 344444555555554434455555544
No 312
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.63 E-value=0.2 Score=60.85 Aligned_cols=116 Identities=25% Similarity=0.412 Sum_probs=57.9
Q ss_pred cEEEEcCCCChHhHHHH---HHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEEC
Q 004875 44 VTLIVGETGCGKSSQVP---QFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKT 120 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip---~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T 120 (726)
+++++||||+|||...- ..+.. +...++...- .--+-...++...|...| .|||. .
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~-~~~~~~~~dm---se~~~~~~~~~l~g~~~g-yvg~~----------------~ 656 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYG-GEQNLITINM---SEFQEAHTVSRLKGSPPG-YVGYG----------------E 656 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhC-CCcceEEEeH---HHhhhhhhhccccCCCCC-ccccc----------------c
Confidence 58999999999995443 22322 2234444431 111112223333333222 23432 2
Q ss_pred hHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCC-----------CceEEEeccCCCHHHHHHHH
Q 004875 121 AGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-----------DLRVVLMSATADITKYRDYF 188 (726)
Q Consensus 121 ~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~-----------~lklIlmSATl~~~~~~~~f 188 (726)
.|.|...+... .+++|++||++. .+.++...++. ++.... .-.+|+|++.+..+.+.+.+
T Consensus 657 ~g~L~~~v~~~-----p~svvllDEiek--a~~~v~~~Llq-~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRRK-----PYSVVLLDEVEK--AHPDVLELFYQ-VFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHhC-----CCcEEEEechhh--cCHHHHHHHHH-HhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 34565665543 578999999983 33343333332 222110 12567777777655555443
No 313
>PRK10436 hypothetical protein; Provisional
Probab=94.62 E-value=0.11 Score=58.26 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHHHHHH--cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~--~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+|-+.+.+.+.+..+. .+..++|+|||||||||.+-..+.+
T Consensus 198 ~~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 198 ETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred HHcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHh
Confidence 34666676777676553 4567999999999999877554433
No 314
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.58 E-value=0.22 Score=63.15 Aligned_cols=121 Identities=19% Similarity=0.240 Sum_probs=71.5
Q ss_pred CcHHHHHHHHHHHHc--CCcEEEEcCCCChHhHHHHHHH------HhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 27 PVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL------LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~--~~~vii~a~TGSGKTt~ip~~l------le~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
.+++-|.+++..++. ++.++|.|..|+||||.+-.++ .+.....|+.+.|.--|+..+.+ .|.. .
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~-A- 907 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVD-A- 907 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCch-H-
Confidence 678999999999884 4899999999999998853332 12222346556665555444421 1211 0
Q ss_pred eeeeeeccccccCCCCeEEEEChHHHHHHH----HhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEM----RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 99 ~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l----~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
.|-..|+... ..........++|||||+= +++...+..+++.+. ....|+|+
T Consensus 908 --------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~--~~garvVL 963 (1623)
T PRK14712 908 --------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAVA 963 (1623)
T ss_pred --------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--hCCCEEEE
Confidence 1111221110 0111112367999999997 666655555555443 23578888
Q ss_pred eccC
Q 004875 175 MSAT 178 (726)
Q Consensus 175 mSAT 178 (726)
+.=+
T Consensus 964 VGD~ 967 (1623)
T PRK14712 964 SGDT 967 (1623)
T ss_pred Ecch
Confidence 8766
No 315
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.53 E-value=0.044 Score=57.31 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=26.4
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhcCC--CcEEEec
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQ 75 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~~~--~~Iivt~ 75 (726)
++.+.+++|+|+|||||||++-.++..... .++++++
T Consensus 124 v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred cccceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence 355789999999999999988666544322 3555544
No 316
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.53 E-value=0.084 Score=62.10 Aligned_cols=119 Identities=21% Similarity=0.227 Sum_probs=68.4
Q ss_pred CCcHHHHHHHHHHHH-cCCcEEEEcCCCChHhHHHHHHH--HhcCCCcEEEecchHHHHHHHHHHHHhhcC--CccCCee
Q 004875 26 LPVMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRN--CELGGEV 100 (726)
Q Consensus 26 LPi~~~Q~~il~~i~-~~~~vii~a~TGSGKTt~ip~~l--le~~~~~Iivt~Prrlaa~~~a~~va~~~~--~~lg~~V 100 (726)
+-+..-|.+++..++ ...-.+|.|=+|+||||.+...+ +-....+|+.|.-+-.|+..+-.++....- ..+|..-
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~ 747 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEE 747 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCcc
Confidence 456666777666654 45668999999999997765543 334446788888777877766665544211 1123211
Q ss_pred eee--eccc--------------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccc
Q 004875 101 GYH--IGHS--------------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE 148 (726)
Q Consensus 101 gy~--v~~~--------------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHe 148 (726)
... +..- ...-..+.|+.||-=-+-.-+.. ...+++.|||||-.
T Consensus 748 kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~----~R~FD~cIiDEASQ 807 (1100)
T KOG1805|consen 748 KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV----NRQFDYCIIDEASQ 807 (1100)
T ss_pred ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh----ccccCEEEEccccc
Confidence 000 0000 01124567777774222222221 23799999999984
No 317
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.27 Score=55.81 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=22.2
Q ss_pred CCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 135 ALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 135 l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
..++.++|||||| .+..+....+++.+-..++...+|+
T Consensus 117 ~~~~KVvIIDEad--~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 117 KGKYKVYIIDEAH--MLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred cCCeeEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 3589999999999 3334444455555443333444443
No 318
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.47 E-value=0.11 Score=55.89 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=24.3
Q ss_pred ceeEEEEcccccccc--cccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 137 KYKVIILDEVHERSV--ESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 137 ~~~~VIIDEaHeR~~--~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
+=.+++|||+| |.- ..|+++..+. +=.+++..||-
T Consensus 104 r~tiLflDEIH-RfnK~QQD~lLp~vE-------~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIH-RFNKAQQDALLPHVE-------NGTIILIGATT 140 (436)
T ss_pred CceEEEEehhh-hcChhhhhhhhhhhc-------CCeEEEEeccC
Confidence 45789999999 542 3467766544 33688888884
No 319
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.44 E-value=0.31 Score=54.15 Aligned_cols=119 Identities=14% Similarity=0.206 Sum_probs=66.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh----cCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEE
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA----ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle----~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Ii 117 (726)
.+++++|++|+||||.+..+... .+.+ .++.+-++|.++....+.++...+.++- .... .
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~-----~~~~----~------ 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF-----ALGK----G------ 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE-----ecCC----C------
Confidence 36889999999999886655433 3332 4566677787776656666654443211 1000 0
Q ss_pred EEChHHHHH-HHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccCCC
Q 004875 118 FKTAGVLLD-EMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATAD 180 (726)
Q Consensus 118 v~T~g~Ll~-~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSATl~ 180 (726)
..|.-+.. .+..- ...++++||||=+- |....+.+...++.+.. ..|+-.+++++|+..
T Consensus 165 -~~P~~i~~~al~~~--~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 165 -QSPVEIARRALEYA--KENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred -CCHHHHHHHHHHHH--HhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 01322222 22110 11378999999998 55444444444444433 346666888888853
No 320
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.43 E-value=0.61 Score=50.94 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=28.7
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
..+.+|||||+| .++......++|.+..-++...+|++|...
T Consensus 140 ~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 488999999999 345666677777765544455566655554
No 321
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.38 E-value=0.12 Score=59.82 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+..+++||.|+|||+.+-.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788999999999766544
No 322
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.14 Score=59.83 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=20.1
Q ss_pred HHHHHHcC---CcEEEEcCCCChHhHHHHHHH
Q 004875 35 IVEKVLEN---RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 35 il~~i~~~---~~vii~a~TGSGKTt~ip~~l 63 (726)
+...+..+ +.+++.||.|+|||+.+-.+.
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHH
Confidence 33344444 456999999999998765554
No 323
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.33 E-value=0.056 Score=53.12 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=25.5
Q ss_pred HHHHHHHHH-HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 30 SLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 30 ~~Q~~il~~-i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+.+.+.. +..+.+++|+|||||||||.+-.++
T Consensus 12 ~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 445555554 4578899999999999999875543
No 324
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.32 E-value=0.11 Score=59.01 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCCCcHHHHHHHHHHHHc--CCcEEEEcCCCChHhHHHHHHHH
Q 004875 24 SSLPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~--~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+|.+.+.+.+.+..+.. +..++|+|||||||||.+-.++.
T Consensus 222 ~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~ 264 (486)
T TIGR02533 222 ETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALS 264 (486)
T ss_pred HHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHh
Confidence 456667777777776653 34689999999999988755543
No 325
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.20 E-value=0.091 Score=56.52 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=25.7
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHHHhcCC-CcEEEe
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFLLAENM-EPILCT 74 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~lle~~~-~~Iivt 74 (726)
++..+.+++|+|+|||||||.+-..+..-.. .+|+.+
T Consensus 156 ~v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti 193 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFTNAALREIPAIERLITV 193 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe
Confidence 3457789999999999999988554433222 345544
No 326
>PRK04195 replication factor C large subunit; Provisional
Probab=94.17 E-value=0.37 Score=54.90 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.+.+++.||+|+|||+.+-.+.-+.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999987765554443
No 327
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.17 E-value=0.37 Score=54.87 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=23.3
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
.++.+|||||+|. +..+....+++.+-...+...+|+.
T Consensus 115 ~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 115 GGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred CCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4889999999993 3344555556655443344444443
No 328
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.11 E-value=0.5 Score=50.39 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.3
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.+++.||+|+|||+.+-.+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998665443
No 329
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.11 E-value=0.35 Score=62.29 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=72.3
Q ss_pred CCcHHHHHHHHHHHHc--CCcEEEEcCCCChHhHHHHHHH--Hh----cCCCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 26 LPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL--LA----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~--~~~vii~a~TGSGKTt~ip~~l--le----~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
..+++-|.+++..+.. ++.++|.|..|+||||++-..+ ++ .....|+...|.--||..+. + .|..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e-~Gi~-- 1038 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----S-AGVD-- 1038 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----h-cCcc--
Confidence 4688999999999886 4799999999999998865443 22 11224555555444443322 1 2211
Q ss_pred CeeeeeeccccccCCCCeEEEEChHHHHHHHH----hcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEE
Q 004875 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMR----DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (726)
Q Consensus 98 ~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~----~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklI 173 (726)
-.|-..++.... .........++|||||+= ++++..+..+++.+. ....|+|
T Consensus 1039 --------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~--~~garvV 1094 (1747)
T PRK13709 1039 --------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAV 1094 (1747)
T ss_pred --------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--cCCCEEE
Confidence 012222322110 111112356899999997 677666666666553 2357888
Q ss_pred EeccC
Q 004875 174 LMSAT 178 (726)
Q Consensus 174 lmSAT 178 (726)
++.=+
T Consensus 1095 LVGD~ 1099 (1747)
T PRK13709 1095 SSGDT 1099 (1747)
T ss_pred Eecch
Confidence 87755
No 330
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.05 E-value=0.08 Score=57.12 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=26.9
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHHHhcCC-CcEEEecc
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFLLAENM-EPILCTQP 76 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~lle~~~-~~Iivt~P 76 (726)
++..+.+++|+|+|||||||.+-.++-.-.. .+++....
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 3557789999999999999987665433222 35555443
No 331
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.04 E-value=0.19 Score=53.67 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=28.3
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
..+.+||||||+ .+..|..-.++|.+.....+..+|+.+-
T Consensus 108 ~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 489999999999 4555777777776665555666665543
No 332
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.02 E-value=0.35 Score=52.24 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=25.6
Q ss_pred HHHHHHHHHH-HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 30 SLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 30 ~~Q~~il~~i-~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+.+++..+ ..+.+++|+|+|||||||.+-.++
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~ 199 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTLLSALL 199 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHH
Confidence 4455666654 456799999999999999876554
No 333
>PRK06620 hypothetical protein; Validated
Probab=94.01 E-value=0.17 Score=51.02 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHhHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~ 61 (726)
+.+++.||+|||||+.+-.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999986543
No 334
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.01 E-value=0.044 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.9
Q ss_pred EEEEcCCCChHhHHHHHHHHhc
Q 004875 45 TLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 45 vii~a~TGSGKTt~ip~~lle~ 66 (726)
++|.|+.|||||+.+...+-+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4799999999999888877665
No 335
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.01 E-value=0.088 Score=54.01 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=39.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEEChH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAG 122 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g 122 (726)
..+++.||+|-||||.. .-+|.|+|..+-..-|-. +--||
T Consensus 53 DHvLl~GPPGlGKTTLA--------------------------~IIA~Emgvn~k~tsGp~--------------leK~g 92 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA--------------------------HIIANELGVNLKITSGPA--------------LEKPG 92 (332)
T ss_pred CeEEeeCCCCCcHHHHH--------------------------HHHHHHhcCCeEeccccc--------------ccChh
Confidence 47899999999999853 334566665443322211 11244
Q ss_pred HHHHHHHhcCCCCCceeEEEEccccc
Q 004875 123 VLLDEMRDRGLNALKYKVIILDEVHE 148 (726)
Q Consensus 123 ~Ll~~l~~~~l~l~~~~~VIIDEaHe 148 (726)
=|...+.+ +..-+++.|||+|.
T Consensus 93 DlaaiLt~----Le~~DVLFIDEIHr 114 (332)
T COG2255 93 DLAAILTN----LEEGDVLFIDEIHR 114 (332)
T ss_pred hHHHHHhc----CCcCCeEEEehhhh
Confidence 45555542 44779999999993
No 336
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.00 E-value=1.5 Score=46.50 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=77.9
Q ss_pred CcEEEEcCCCChHhHHHHHH---HHhcCCCc-EEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQF---LLAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~---lle~~~~~-Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
.+++++|-.|+||||.+..+ +.+.+.+. +.-.-+-|.+|+..-+.+++..|+.+-. .. .-...
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~-------~~-~G~Dp----- 206 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS-------GK-EGADP----- 206 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc-------cC-CCCCc-----
Confidence 36789999999999887655 44555443 3334567888888888888876655321 11 10111
Q ss_pred EChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCc------eEEEeccCC--CHHHHHHHHh
Q 004875 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDL------RVVLMSATA--DITKYRDYFR 189 (726)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~l------klIlmSATl--~~~~~~~~f~ 189 (726)
..+..+.+.... ..++++|++|=|- |.-+..-|+.-|+++.+ ..++. .++++=||. |+-.-++.|+
T Consensus 207 --AaVafDAi~~Ak--ar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 207 --AAVAFDAIQAAK--ARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred --HHHHHHHHHHHH--HcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH
Confidence 124444454432 2489999999999 66555545554544433 23333 455668886 3334455666
Q ss_pred hc
Q 004875 190 DL 191 (726)
Q Consensus 190 ~~ 191 (726)
..
T Consensus 282 ea 283 (340)
T COG0552 282 EA 283 (340)
T ss_pred Hh
Confidence 53
No 337
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.97 E-value=0.12 Score=59.77 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=29.2
Q ss_pred CCCCcHHHHHHHHHHHH--cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~--~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+|-+.+.+.+.+..+. .+..++++|||||||||.+-..+-
T Consensus 296 ~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~ 338 (564)
T TIGR02538 296 DKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALN 338 (564)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 45666777666666554 346789999999999987754443
No 338
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.90 E-value=0.22 Score=48.02 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
+++|+|+.|+||||.+-.++-.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999998776543
No 339
>PTZ00293 thymidine kinase; Provisional
Probab=93.87 E-value=0.11 Score=51.86 Aligned_cols=36 Identities=11% Similarity=0.245 Sum_probs=25.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh--cCCCcEEEecc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQP 76 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle--~~~~~Iivt~P 76 (726)
.|+..++.||-+||||+.+.+.+.. ....++++.-|
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp 40 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKY 40 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3567799999999999987776543 23345666655
No 340
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.86 E-value=0.14 Score=54.08 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=41.1
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHH----HHhcCCCcEEEecc
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF----LLAENMEPILCTQP 76 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~----lle~~~~~Iivt~P 76 (726)
.|.++-|..-++++.++..++-.||-|+|||+..... +-....++|+.+-|
T Consensus 127 ~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 127 IPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred EecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 6889999999999999999999999999999543332 22333458999999
No 341
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.82 E-value=0.2 Score=65.82 Aligned_cols=122 Identities=15% Similarity=0.202 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHH------HHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 26 LPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVP------QFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip------~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
..+++-|.+++..+..+ +.++|.|..|+||||++- .-+++.....|+.+.|.--++..+.+ .|...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~-----~g~~a- 1091 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS-----AGVQA- 1091 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh-----cCCch-
Confidence 56899999999998754 788999999999998882 12233333456656665555544431 12110
Q ss_pred CeeeeeeccccccCCCCeEEEEChHHHHHHH--HhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEM--RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 98 ~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l--~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
.|-..++... ..........++|||||+= ++++..+..+++.+. .+..|+|++
T Consensus 1092 ---------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~vlv 1146 (1960)
T TIGR02760 1092 ---------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRAVSL 1146 (1960)
T ss_pred ---------------------HhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEEEEe
Confidence 0222222100 0000113367899999997 677666666665543 345688877
Q ss_pred ccC
Q 004875 176 SAT 178 (726)
Q Consensus 176 SAT 178 (726)
.=+
T Consensus 1147 GD~ 1149 (1960)
T TIGR02760 1147 GDI 1149 (1960)
T ss_pred CCh
Confidence 655
No 342
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.81 E-value=0.2 Score=53.87 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHHHcC----CcEEEEcCCCChHhHHHHHH
Q 004875 27 PVMSLREKIVEKVLEN----RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~----~~vii~a~TGSGKTt~ip~~ 62 (726)
++||.|....+.+... +-.+++||.|+|||+..-.+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 3467777777776643 35789999999999765443
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.14 Score=48.72 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=20.2
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+++.+.|.|++|+||||.+-.+.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~ 46 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIA 46 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3467899999999999998765543
No 344
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.77 E-value=0.14 Score=59.90 Aligned_cols=38 Identities=32% Similarity=0.466 Sum_probs=29.4
Q ss_pred cCCCCeEEEEChHHHHHHHHhcCCCCC-ceeEEEEcccc
Q 004875 110 LSERSKIVFKTAGVLLDEMRDRGLNAL-KYKVIILDEVH 147 (726)
Q Consensus 110 ~~~~~~Iiv~T~g~Ll~~l~~~~l~l~-~~~~VIIDEaH 147 (726)
..++++|+||-...|++-..++...+. +=++||+||||
T Consensus 219 l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAH 257 (945)
T KOG1132|consen 219 LKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAH 257 (945)
T ss_pred hcccCcEEEechhhhcCHhhhccccccccccEEEEeccc
Confidence 356789999999999887665543332 77999999999
No 345
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.26 Score=57.39 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=21.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhCCCccc
Q 004875 609 YLVQSSLHHVSELYEDILNAVHRFRPKFLG 638 (726)
Q Consensus 609 ~L~~~~l~~~~~i~~ql~~~~~~~~~~~~~ 638 (726)
-+++.-|..-.++-..++..+..+.++.-.
T Consensus 549 ~~~~e~l~~~~~~l~~~~~~~~~~~~~~~~ 578 (620)
T PRK14954 549 KFSYEELMQDAALLSKEIESFYGIPLKLQI 578 (620)
T ss_pred cccHHHHHhHHHHHHHHHHHHhcCCceEEE
Confidence 346666776668888888888887775543
No 346
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.72 Score=50.33 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=24.9
Q ss_pred CCCCcHHHHHHHHHHHH-----cC--CcEEEEcCCCChHhHHHHHH
Q 004875 24 SSLPVMSLREKIVEKVL-----EN--RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~-----~~--~~vii~a~TGSGKTt~ip~~ 62 (726)
..||-..-|-+-+..+. .+ .+++|.|+||+|||+.+-..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v 62 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFV 62 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHH
Confidence 33776666555444332 22 46999999999999655433
No 347
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.67 E-value=0.13 Score=54.53 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcC-CcEEEEcCCCChHhHHHHHHHHhcC-CCcEEEecc
Q 004875 29 MSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAEN-MEPILCTQP 76 (726)
Q Consensus 29 ~~~Q~~il~~i~~~-~~vii~a~TGSGKTt~ip~~lle~~-~~~Iivt~P 76 (726)
.+-+.+++..+.+. .+++|+|.|||||||.+=.++..-. ..++++.+-
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiED 208 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIED 208 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEee
Confidence 35566677666555 4999999999999998766554332 237777765
No 348
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.64 E-value=0.074 Score=41.92 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCChHhHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+++|.|++||||||.+-.+
T Consensus 23 g~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 458999999999999876443
No 349
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.31 Score=53.39 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=20.3
Q ss_pred HHHHHHHcC---CcEEEEcCCCChHhHHHHHH
Q 004875 34 KIVEKVLEN---RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 34 ~il~~i~~~---~~vii~a~TGSGKTt~ip~~ 62 (726)
.+...+.++ +.+++.||.|+|||+.+-.+
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 344444454 36889999999999766544
No 350
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=93.50 E-value=0.23 Score=57.90 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=41.8
Q ss_pred ccCCCcEEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC---CCceEEE
Q 004875 323 ICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYR 396 (726)
Q Consensus 323 ~f~~~rkVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~---~~G~~~~ 396 (726)
.|.+.++.|++--.+-.|-|=|+|=.+.- ..+..+..+ =.|.+||.-|. ..|.-.+
T Consensus 479 SFd~plRFIFS~waLrEGWDNPNVFtIck--------L~~S~SeiS----------K~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 479 SFDEPLRFIFSKWALREGWDNPNVFTICK--------LRSSGSEIS----------KLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred ccCCcceeeeehhHHhhcCCCCCeeEEEE--------ecCCCcchH----------HHHHhccceeeeeccccceec
Confidence 35666799999999999999999877764 333443333 38999999997 5676554
No 351
>CHL00176 ftsH cell division protein; Validated
Probab=93.47 E-value=0.43 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=18.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+.+++.||+|+|||+.+-....+.
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999998765554443
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.45 E-value=0.32 Score=45.62 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=51.5
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhcC--CCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeE
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~~--~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~I 116 (726)
+..++.+.|.|+.||||||.+-.+.-... .+.|.+-. + ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~-~--------------------~~i~~~~~----------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS-T--------------------VKIGYFEQ----------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC-e--------------------EEEEEEcc-----------
Confidence 34678999999999999987655432111 11222210 0 13444311
Q ss_pred EEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHH
Q 004875 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL 164 (726)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~ 164 (726)
.+.|...+......+ ..+.+++|+||-- ..++.+....+.+.+.
T Consensus 71 --lS~G~~~rv~laral-~~~p~illlDEP~-~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 71 --LSGGEKMRLALAKLL-LENPNLLLLDEPT-NHLDLESIEALEEALK 114 (144)
T ss_pred --CCHHHHHHHHHHHHH-hcCCCEEEEeCCc-cCCCHHHHHHHHHHHH
Confidence 455655544333222 3478999999998 6777665555544443
No 353
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.36 E-value=0.17 Score=60.38 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHH----HcCCcEEEEcCCCChHhHHHHHH
Q 004875 27 PVMSLREKIVEKV----LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 27 Pi~~~Q~~il~~i----~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
|+++.|.+.++.+ .++++.++.+|||+|||..+...
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~ 49 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSL 49 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHH
Confidence 5678888877765 46789999999999999544433
No 354
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.32 E-value=0.26 Score=54.27 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=24.6
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
.++.++||||+| ++ +......++|.+ ...++-.++++.||
T Consensus 116 ~~~kViiIDead-~m-~~~aanaLLk~L-Eep~~~~~fIL~a~ 155 (394)
T PRK07940 116 GRWRIVVIEDAD-RL-TERAANALLKAV-EEPPPRTVWLLCAP 155 (394)
T ss_pred CCcEEEEEechh-hc-CHHHHHHHHHHh-hcCCCCCeEEEEEC
Confidence 488999999999 33 334445556654 34444455555555
No 355
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.31 E-value=0.4 Score=46.31 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=59.3
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCC--
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS-- 114 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~-- 114 (726)
+..+..+.|.||.||||||.+-.+.-.. ..+.|.+-- ..+.... ..... ..+||..... ...+.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g-~~~~~~~-~~~~~--------~~i~~~~~~~-~~~~~t~~ 93 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG-VDLRDLD-LESLR--------KNIAYVPQDP-FLFSGTIR 93 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC-EEhhhcC-HHHHH--------hhEEEEcCCc-hhccchHH
Confidence 3478899999999999998776654221 123333321 1111000 00111 1244432111 110000
Q ss_pred -eEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 115 -KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 115 -~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.+ .+.|.-.+......+ ..+.+++++||-= ..++......+.+.+........+|+.|
T Consensus 94 e~l--LS~G~~~rl~la~al-~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~tii~~s 152 (171)
T cd03228 94 ENI--LSGGQRQRIAIARAL-LRDPPILILDEAT-SALDPETEALILEALRALAKGKTVIVIA 152 (171)
T ss_pred HHh--hCHHHHHHHHHHHHH-hcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 01 444544443332221 3378999999987 6777666555555554443343344433
No 356
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.31 E-value=0.55 Score=51.03 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=19.3
Q ss_pred HHHHHHcC---CcEEEEcCCCChHhHHHHHH
Q 004875 35 IVEKVLEN---RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 35 il~~i~~~---~~vii~a~TGSGKTt~ip~~ 62 (726)
+...+.++ +..++.||.|+|||+.+-.+
T Consensus 26 l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~l 56 (355)
T TIGR02397 26 LKNAIKNGRIAHAYLFSGPRGTGKTSIARIF 56 (355)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 33444454 35799999999999765443
No 357
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=93.28 E-value=0.1 Score=62.48 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=64.8
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHh--HHHHHHHHhcC-CCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKT--t~ip~~lle~~-~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.+..|++| ++-.+.=++--|..+.||=||| ..+|.++-... .+.-+||.---+ |..=+++.+..+ .-+|-+||
T Consensus 136 dm~~ydVQ--LiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYL-A~RDaewm~p~y-~flGLtVg 211 (1025)
T PRK12900 136 DMVPYDVQ--LIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYL-AQRDKEWMNPVF-EFHGLSVG 211 (1025)
T ss_pred CccccchH--HhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHh-hhhhHHHHHHHH-HHhCCeee
Confidence 34455555 6666655666689999999999 34566655433 344455544333 333333332211 13455666
Q ss_pred eeeccc----cccCCCCeEEEEChHH-----HHHHHHhc--CCCCCceeEEEEcccc
Q 004875 102 YHIGHS----KHLSERSKIVFKTAGV-----LLDEMRDR--GLNALKYKVIILDEVH 147 (726)
Q Consensus 102 y~v~~~----~~~~~~~~Iiv~T~g~-----Ll~~l~~~--~l~l~~~~~VIIDEaH 147 (726)
...... ++..=.++|+|+|..- |.+-|... ..-...+.+.||||||
T Consensus 212 ~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 212 VILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred eeCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 442211 1112257999999743 33333221 1112378899999999
No 358
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.27 E-value=0.092 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
...-++|.|||||||||.+..++-
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId 147 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMID 147 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHH
Confidence 345789999999999988877764
No 359
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.25 E-value=0.099 Score=54.42 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHHHHHHc--CCcEEEEcCCCChHhHHHHHHHHh
Q 004875 25 SLPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~--~~~vii~a~TGSGKTt~ip~~lle 65 (726)
+|-..+.|.+.+..+.. +..++|+|+|||||||.+-.++..
T Consensus 61 ~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 61 KLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 45556667777765543 457899999999999987655543
No 360
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.24 E-value=0.59 Score=45.39 Aligned_cols=125 Identities=12% Similarity=0.068 Sum_probs=60.5
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCC--
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS-- 114 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~-- 114 (726)
+..++.+.|.|++||||||.+-.+.-.. ..+.|.+ .-..+... ..... ..++|... +......+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~-~g~~~~~~--~~~~~--------~~i~~~~q-~~~~~~~tv~ 92 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL-DGVPVSDL--EKALS--------SLISVLNQ-RPYLFDTTLR 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE-CCEEHHHH--HHHHH--------hhEEEEcc-CCeeecccHH
Confidence 3478899999999999998776554221 1234433 22112111 11111 12444321 11100000
Q ss_pred -e-EEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 115 -K-IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 115 -~-Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
. +.-.+.|...+......+ ..+.+++|+||.= ..++.+....+.+.+.......-+|+.|-
T Consensus 93 ~~i~~~LS~G~~qrv~laral-~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~sh 155 (178)
T cd03247 93 NNLGRRFSGGERQRLALARIL-LQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWITH 155 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHH-hcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 0 122334444443333222 3478999999998 66776555544444443333444454443
No 361
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.24 E-value=0.35 Score=53.95 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=16.9
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
..+++.||+|+||||.+-.+.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 378999999999998765543
No 362
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.22 E-value=0.18 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=19.9
Q ss_pred HHHHcCCcEEEEcCCCChHhHHH
Q 004875 37 EKVLENRVTLIVGETGCGKSSQV 59 (726)
Q Consensus 37 ~~i~~~~~vii~a~TGSGKTt~i 59 (726)
+.+.++.|++..||+|+|||..+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla 226 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIY 226 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHH
Confidence 55678999999999999999654
No 363
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.20 E-value=0.22 Score=55.12 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=16.2
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
.++++.||||+|||+..-.+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~l 128 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTL 128 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 57999999999999765433
No 364
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.13 E-value=0.29 Score=52.77 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=21.9
Q ss_pred HHHHHHHH-HHHHcCccccCCCCCCCCCCHhHHH
Q 004875 451 EVVGDALD-LLDHKRALQKISPRGRYEPTFYGRL 483 (726)
Q Consensus 451 ~~i~~al~-~L~~lgal~~~~~~g~~~lT~lG~~ 483 (726)
..+.+.++ .|...|.|.. .+.|+ .+|+.|..
T Consensus 291 ~~~~~~~e~~Li~~~li~~-~~~gr-~~~~~~~~ 322 (328)
T PRK00080 291 DTIEDVYEPYLIQQGFIQR-TPRGR-VATPKAYE 322 (328)
T ss_pred chHHHHhhHHHHHcCCccc-CCchH-HHHHHHHH
Confidence 34666677 8889999976 55565 47777764
No 365
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.12 E-value=0.2 Score=56.56 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=28.4
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
.+|.+.|||||| ++.+....++||.+-.-++.+.+|+
T Consensus 118 ~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIl 154 (515)
T COG2812 118 GRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFIL 154 (515)
T ss_pred ccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEE
Confidence 499999999999 6777778888888765555555554
No 366
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.04 E-value=0.1 Score=56.75 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=22.1
Q ss_pred HHHHHH-cCCcEEEEcCCCChHhHHHHHHH
Q 004875 35 IVEKVL-ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 35 il~~i~-~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+.+. .+..++|+|||||||||.+-.++
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHH
Confidence 444444 56889999999999998775544
No 367
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.97 E-value=0.18 Score=52.92 Aligned_cols=33 Identities=36% Similarity=0.468 Sum_probs=25.9
Q ss_pred HHHHHHHHc----CCcEEEEcCCCChHhHHHHHHHHh
Q 004875 33 EKIVEKVLE----NRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 33 ~~il~~i~~----~~~vii~a~TGSGKTt~ip~~lle 65 (726)
+++.+.+.. .+.+.|+|..|+|||+.+..+..+
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 455666655 468999999999999998887754
No 368
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.11 Score=55.06 Aligned_cols=103 Identities=24% Similarity=0.300 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEECh
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTA 121 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~ 121 (726)
.+.+++-||.|+|||. +|+++|.+.|..+++.-++.+. + =-|+-.
T Consensus 127 ~kGiLL~GPpG~GKTm--------------------------lAKA~Akeaga~fInv~~s~lt-----~----KWfgE~ 171 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTM--------------------------LAKAIAKEAGANFINVSVSNLT-----S----KWFGEA 171 (386)
T ss_pred CccceecCCCCchHHH--------------------------HHHHHHHHcCCCcceeeccccc-----h----hhHHHH
Confidence 4688999999999994 3455666666655543222211 1 123445
Q ss_pred HHHHHHHHhcCCCCCceeEEEEccccc----cc-ccccHHHHH------HHHHHhcCCCceEEEeccCCC
Q 004875 122 GVLLDEMRDRGLNALKYKVIILDEVHE----RS-VESDLVLVC------VKQLLLKKNDLRVVLMSATAD 180 (726)
Q Consensus 122 g~Ll~~l~~~~l~l~~~~~VIIDEaHe----R~-~~~d~ll~~------lk~l~~~~~~lklIlmSATl~ 180 (726)
+.+++.+..-.-. ...+.|.|||++- |. -+-+....+ +..-+....+.+|++|.||--
T Consensus 172 eKlv~AvFslAsK-l~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 172 QKLVKAVFSLASK-LQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred HHHHHHHHhhhhh-cCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 6676665542211 2789999999982 21 111111111 122223345568999999953
No 369
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.89 E-value=0.82 Score=55.74 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=14.9
Q ss_pred cEEEEcCCCChHhHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~ 61 (726)
.++++||||+|||+..-.
T Consensus 600 ~~Lf~Gp~G~GKT~lA~a 617 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKA 617 (857)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999976533
No 370
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.89 E-value=2.3 Score=46.55 Aligned_cols=131 Identities=18% Similarity=0.285 Sum_probs=82.7
Q ss_pred CcEEEEcCCCChHhHHHHH---HHHhcCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQ---FLLAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~---~lle~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
.+++++|=-||||||.... |+...+.+ -++++-..|-+|...-+.+++..+.++-.. + .....
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~---------~~~~P--- 167 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G---------TEKDP--- 167 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C---------CCCCH---
Confidence 3578899999999977544 45554443 466778889999888888888766543221 0 01000
Q ss_pred EChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC--CHHHHHHHHhh
Q 004875 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA--DITKYRDYFRD 190 (726)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl--~~~~~~~~f~~ 190 (726)
.++.-+-+..-. ...+++||||=|-...++.++...+...--..+|+=-++++=|++ ++...+.-|+.
T Consensus 168 --v~Iak~al~~ak--~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 168 --VEIAKAALEKAK--EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred --HHHHHHHHHHHH--HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 123333333211 237899999999954566555555544444457777788888886 66677777765
No 371
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=92.87 E-value=0.17 Score=54.30 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=20.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcCCCcE
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAENMEPI 71 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~~~~I 71 (726)
.-++|.||.|||||.+.-...-+.+...|
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i 177 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPI 177 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeE
Confidence 35788999999999876665555544333
No 372
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.86 E-value=0.4 Score=55.33 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=20.9
Q ss_pred HHHHHHHcC---CcEEEEcCCCChHhHHHHHHH
Q 004875 34 KIVEKVLEN---RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 34 ~il~~i~~~---~~vii~a~TGSGKTt~ip~~l 63 (726)
.+...+.++ +..++.||.|+|||+.+-.+.
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344445555 347999999999998765554
No 373
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.82 E-value=0.17 Score=64.17 Aligned_cols=133 Identities=10% Similarity=0.053 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh---cCC--CcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---ENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle---~~~--~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
++-|.+++. ..+++++|.|.-|||||+.+..-++. .+. ..|+++.=++.||..+..|+...+...+...-...
T Consensus 3 t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~~ 80 (1232)
T TIGR02785 3 TDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNSK 80 (1232)
T ss_pred CHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 567888887 46889999999999999766554432 222 35777777788888888888775543222111100
Q ss_pred eccccccCCCCeEEEEChHHHHHHHH-hcCCCCC-ceeEEEEcccccccccccHHHHHHHHHH
Q 004875 104 IGHSKHLSERSKIVFKTAGVLLDEMR-DRGLNAL-KYKVIILDEVHERSVESDLVLVCVKQLL 164 (726)
Q Consensus 104 v~~~~~~~~~~~Iiv~T~g~Ll~~l~-~~~l~l~-~~~~VIIDEaHeR~~~~d~ll~~lk~l~ 164 (726)
+...+...-...-|+|-..+...+. .....+. +.++=|.||.....+..+.+..++....
T Consensus 81 -~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~~y 142 (1232)
T TIGR02785 81 -HLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEEEY 142 (1232)
T ss_pred -HHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHHHH
Confidence 1112222334566888766654443 3221111 4566679998855555555555554433
No 374
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.78 E-value=0.58 Score=53.97 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|+.+.|+||+||||||.+-..+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999876654
No 375
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.70 E-value=0.97 Score=47.13 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=23.7
Q ss_pred HHHHHHHHHc-C--CcEEEEcCCCChHhHHHHHHHH
Q 004875 32 REKIVEKVLE-N--RVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 32 Q~~il~~i~~-~--~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+..+..+.+ + +++++.|||||||||.+-.+.-
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhC
Confidence 3444555544 3 5889999999999998766653
No 376
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.42 Score=53.97 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=27.7
Q ss_pred CCCCccCCCCC-CcHHHHHHHHHHHHc---------------CCcEEEEcCCCChHhHHHHH
Q 004875 16 SPFTSPEFSSL-PVMSLREKIVEKVLE---------------NRVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 16 ~~~~~~~r~~L-Pi~~~Q~~il~~i~~---------------~~~vii~a~TGSGKTt~ip~ 61 (726)
...|..+|.+. -+..++.++-.+|.. -.-++++||+|||||.+.-.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKA 564 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKA 564 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHH
Confidence 44445555543 234455555555542 24689999999999965433
No 377
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.60 E-value=0.81 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.0
Q ss_pred HHHHHHHcC---CcEEEEcCCCChHhHHH
Q 004875 34 KIVEKVLEN---RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 34 ~il~~i~~~---~~vii~a~TGSGKTt~i 59 (726)
.+...+.++ +..+++||.|+|||+..
T Consensus 28 ~L~~~i~~~~l~hayLf~Gp~G~GKtt~A 56 (614)
T PRK14971 28 TLKNAIATNKLAHAYLFCGPRGVGKTTCA 56 (614)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCCHHHHH
Confidence 445555555 34799999999999843
No 378
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.59 E-value=1.7 Score=50.30 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=83.2
Q ss_pred CCcEEEEcCCCChHhHHHH-HHH--H-hcCCCcEEEecchHHHHHHHHHHHHhhcCCcc-CCeeee------eecccccc
Q 004875 42 NRVTLIVGETGCGKSSQVP-QFL--L-AENMEPILCTQPRRFAVVAVAKMVAKGRNCEL-GGEVGY------HIGHSKHL 110 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip-~~l--l-e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~l-g~~Vgy------~v~~~~~~ 110 (726)
.+-.++..|==.|||+.+. .+. + ......|+++.|++-.+..+.+++...+.... +..+.. .+.+.+
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~n-- 331 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPD-- 331 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecC--
Confidence 4678999999999996443 322 1 12345899999999888888777766322111 111111 111111
Q ss_pred CCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHHHHHHHHhh
Q 004875 111 SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRD 190 (726)
Q Consensus 111 ~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~~ 190 (726)
..+..|.|.|.. ..+...-..++++|||||++ +..+.+..++--+.. .+.++|.+|.|-+.+.-..|+.+
T Consensus 332 G~kstI~FaSar------ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~--~n~k~I~ISS~Ns~~~sTSFL~n 401 (738)
T PHA03368 332 GSRSTIVFASSH------NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQ--TNCKIIFVSSTNTGKASTSFLYN 401 (738)
T ss_pred CCccEEEEEecc------CCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhc--cCccEEEEecCCCCccchHHHHh
Confidence 112466666431 11222334899999999994 555666666633333 37899999999776666666665
Q ss_pred c
Q 004875 191 L 191 (726)
Q Consensus 191 ~ 191 (726)
+
T Consensus 402 L 402 (738)
T PHA03368 402 L 402 (738)
T ss_pred h
Confidence 4
No 379
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.49 E-value=0.38 Score=57.38 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=15.6
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
.++++||||+|||+..-.+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999766444
No 380
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.45 E-value=0.34 Score=46.41 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=54.0
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhcC--CCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeE
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~~--~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~I 116 (726)
+..+..+.|.|+.||||||.+-.+.-... .+.|.+- -..+........ ....+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~-g~~~~~~~~~~~--------~~~~i~~~~q----------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD-GKEVSFASPRDA--------RRAGIAMVYQ----------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CEECCcCCHHHH--------HhcCeEEEEe-----------
Confidence 45788999999999999998765542211 1223221 100100000000 0112444311
Q ss_pred EEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHH
Q 004875 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL 164 (726)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~ 164 (726)
.+.|...+......+ ..+.+++++||-= ..++.+....+.+.+.
T Consensus 83 --LS~G~~qrl~laral-~~~p~illlDEP~-~~LD~~~~~~l~~~l~ 126 (163)
T cd03216 83 --LSVGERQMVEIARAL-ARNARLLILDEPT-AALTPAEVERLFKVIR 126 (163)
T ss_pred --cCHHHHHHHHHHHHH-hcCCCEEEEECCC-cCCCHHHHHHHHHHHH
Confidence 556665554433322 3477999999998 6777665555544443
No 381
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.44 E-value=0.25 Score=58.76 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=36.9
Q ss_pred CCcHHHHHHHHHHHH----c-----CCcEEEEcCCCChHh--HHHHHHHHhc-CCCcEEEecchHHHHHHH
Q 004875 26 LPVMSLREKIVEKVL----E-----NRVTLIVGETGCGKS--SQVPQFLLAE-NMEPILCTQPRRFAVVAV 84 (726)
Q Consensus 26 LPi~~~Q~~il~~i~----~-----~~~vii~a~TGSGKT--t~ip~~lle~-~~~~Iivt~Prrlaa~~~ 84 (726)
+-.++-|.+.+..+. + ++.++|.|+||+||| +++|..+... ..++|+|...+..+..|+
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL 94 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQL 94 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 445677877666654 3 378999999999999 5566655433 234555554444443333
No 382
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.44 E-value=0.55 Score=50.19 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=28.8
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
.++.++|||||| .++......++|.+-.-.++..+|+.|..
T Consensus 112 g~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 112 GIAQVVIVDPAD--AINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred CCcEEEEeccHh--hhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 489999999999 34556677777866554455666666654
No 383
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.44 E-value=0.82 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+.+++.||+|||||+.+-.+.-+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999998765554443
No 384
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.42 E-value=0.3 Score=55.43 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHhHHH
Q 004875 43 RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~i 59 (726)
+.+++.||+|+|||+.+
T Consensus 217 ~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIA 233 (512)
T ss_pred cceEEECCCCCcHHHHH
Confidence 57999999999999754
No 385
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=92.42 E-value=0.6 Score=56.11 Aligned_cols=143 Identities=14% Similarity=0.161 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHH----cCCcEEEEcCCCChHhHHHHHHHH-----hcCCC-cEEEecchHHHHHH-HHHHHHhhcCCcc
Q 004875 28 VMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFLL-----AENME-PILCTQPRRFAVVA-VAKMVAKGRNCEL 96 (726)
Q Consensus 28 i~~~Q~~il~~i~----~~~~vii~a~TGSGKTt~ip~~ll-----e~~~~-~Iivt~Prrlaa~~-~a~~va~~~~~~l 96 (726)
+..||..-++.+. +|=|-|+.-+-|-|||.|...++. +.+|+ .+||+++.-++.=. -.+||+-.+ ++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPgl--KI 693 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPGL--KI 693 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCcc--eE
Confidence 3678887777664 567889999999999977655543 33444 56666664443211 122222211 11
Q ss_pred CCeeeee-e----ccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 004875 97 GGEVGYH-I----GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 97 g~~Vgy~-v----~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk 171 (726)
-...|-. - |....-...-+|.|++...+++-+..- .-.++.++|+||+|. .- +|--.-...++..+.. |
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF--krkrWqyLvLDEaqn-IK--nfksqrWQAllnfnsq-r 767 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF--KRKRWQYLVLDEAQN-IK--NFKSQRWQALLNFNSQ-R 767 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHH--Hhhccceeehhhhhh-hc--chhHHHHHHHhccchh-h
Confidence 1111111 0 011111234578888888777765431 123899999999992 21 2333333334444433 3
Q ss_pred EEEeccC
Q 004875 172 VVLMSAT 178 (726)
Q Consensus 172 lIlmSAT 178 (726)
.++++.|
T Consensus 768 RLLLtgT 774 (1958)
T KOG0391|consen 768 RLLLTGT 774 (1958)
T ss_pred eeeecCC
Confidence 4555666
No 386
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.41 E-value=1.3 Score=47.46 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 123 VLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 123 ~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
-+.+.+...+. ..++.+||||+||. ++......++|.+- .+|+..+|+.|..
T Consensus 111 ~i~~~l~~~p~-~~~~kVvII~~ae~--m~~~aaNaLLK~LE-EPp~~~fILi~~~ 162 (314)
T PRK07399 111 EIKRFLSRPPL-EAPRKVVVIEDAET--MNEAAANALLKTLE-EPGNGTLILIAPS 162 (314)
T ss_pred HHHHHHccCcc-cCCceEEEEEchhh--cCHHHHHHHHHHHh-CCCCCeEEEEECC
Confidence 34444544443 35899999999993 34445555666554 4456656665543
No 387
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.38 E-value=5.2 Score=46.04 Aligned_cols=120 Identities=23% Similarity=0.290 Sum_probs=75.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHH---hcCCCcEEEecchHHHHHHHHHHHHhhcCC-ccCCeeeeeecccccc--------
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNC-ELGGEVGYHIGHSKHL-------- 110 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll---e~~~~~Iivt~Prrlaa~~~a~~va~~~~~-~lg~~Vgy~v~~~~~~-------- 110 (726)
..+-+.|.-|-|||.++-..+. ..|...|.+|.|.-.-...+.+++.+.++. .....+.|.+-.....
T Consensus 276 ~~vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy~iI~s~np~fkkaivR 355 (1011)
T KOG2036|consen 276 STVSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDYDIIQSTNPDFKKAIVR 355 (1011)
T ss_pred ceEEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHHHHHHHHcchhhhcchhhcchhhhhhcChhhhhhEEE
Confidence 4678899999999977766654 357779999999877778888887765542 1112233332111100
Q ss_pred -----CCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCC
Q 004875 111 -----SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (726)
Q Consensus 111 -----~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~ 180 (726)
..+--|-|..|. +...+....++|||||- -+-+.++|.++ ..-+++|+.|++
T Consensus 356 Inifr~hrQtIQYi~P~--------D~~kl~q~eLlVIDEAA------AIPLplvk~Li----gPylVfmaSTin 412 (1011)
T KOG2036|consen 356 INIFREHRQTIQYISPH--------DHQKLGQAELLVIDEAA------AIPLPLVKKLI----GPYLVFMASTIN 412 (1011)
T ss_pred EEEeccccceeEeeccc--------hhhhccCCcEEEechhh------cCCHHHHHHhh----cceeEEEeeccc
Confidence 011122233321 22234578999999998 34567777776 235899999975
No 388
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.30 E-value=0.38 Score=51.14 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHHH-HHHHcCccccCCCCCCCCCCHhHHH
Q 004875 452 VVGDALD-LLDHKRALQKISPRGRYEPTFYGRL 483 (726)
Q Consensus 452 ~i~~al~-~L~~lgal~~~~~~g~~~lT~lG~~ 483 (726)
.+...++ .|.+.|.|.. .+.|+ ..|..|..
T Consensus 271 ~~~~~~e~~Li~~~li~~-~~~g~-~~~~~~~~ 301 (305)
T TIGR00635 271 TIEDVYEPYLLQIGFLQR-TPRGR-IATELAYE 301 (305)
T ss_pred hHHHhhhHHHHHcCCccc-CCchh-hhhHHHHH
Confidence 4566667 6888888876 45565 47777764
No 389
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.21 E-value=1.1 Score=45.47 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=34.3
Q ss_pred HHHHHcCC-cEEEEcCCCChHhHHHHHHHHhcC---CCcEEEecchHHHHHHHHHHHHhhc
Q 004875 36 VEKVLENR-VTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAKGR 92 (726)
Q Consensus 36 l~~i~~~~-~vii~a~TGSGKTt~ip~~lle~~---~~~Iivt~Prrlaa~~~a~~va~~~ 92 (726)
-..+..++ .+.++|+-|||||+..- .+++.. ...+++..-..+....+..++...+
T Consensus 44 ~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 44 HAAIADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred HHHHhcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHHHHHHHHHHHh
Confidence 34455666 88999999999997765 333321 1234445555565666666665543
No 390
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=92.21 E-value=0.42 Score=56.18 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=88.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhc---CCC-----------------CCcEEEEecCCCCHHHHHHHhhcc
Q 004875 265 VLHIHKNESDIEKSILVFLPTYYALEQQWHLMK---PLS-----------------SFFKVHILHSSVDTEQALMAMKIC 324 (726)
Q Consensus 265 v~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~---~~~-----------------~~~~v~~lh~~l~~~er~~~~~~f 324 (726)
+..|.+...+.+.+.|||..+.....-+..+|. ..+ .+.....+.|.....+|....+.|
T Consensus 1131 LleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~F 1210 (1567)
T KOG1015|consen 1131 LLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEF 1210 (1567)
T ss_pred HHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHh
Confidence 344444445556799999888777666666553 111 134567788999999999988888
Q ss_pred CC---Cc--EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeec
Q 004875 325 KS---HR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVT 399 (726)
Q Consensus 325 ~~---~r--kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s 399 (726)
.+ .| -.||+|-...-|||+=..+-||. ||...+..-- -+.+=|+-|-|-..|-..|||+.
T Consensus 1211 Ndp~NlRaRl~LISTRAGsLGiNLvAANRVII--------fDasWNPSyD-------tQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1211 NDPTNLRARLFLISTRAGSLGINLVAANRVII--------FDASWNPSYD-------TQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred cCcccceeEEEEEeeccCccccceeecceEEE--------EecccCCccc-------hHHHHHHHhhcCcCceeehhhhh
Confidence 53 33 78999999999999988887776 6666554322 23357888899999999999987
Q ss_pred hh
Q 004875 400 KS 401 (726)
Q Consensus 400 ~~ 401 (726)
..
T Consensus 1276 qG 1277 (1567)
T KOG1015|consen 1276 QG 1277 (1567)
T ss_pred cc
Confidence 53
No 391
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.17 E-value=0.63 Score=45.37 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=26.2
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCC-CceEEEeccC
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMSAT 178 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~-~lklIlmSAT 178 (726)
.+.+++|+||.. ..++......+.+.+..... +..+|+.|--
T Consensus 115 ~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 477999999999 67776655555444433322 3556665544
No 392
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.17 E-value=0.54 Score=56.40 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.0
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
+++++||||+|||+..-.+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~l 504 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQL 504 (731)
T ss_pred eEEEECCCCccHHHHHHHH
Confidence 4799999999999655443
No 393
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.13 E-value=0.32 Score=48.93 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.++|+||.|+||||.+-...
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 679999999999998776554
No 394
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.12 E-value=0.46 Score=46.27 Aligned_cols=92 Identities=21% Similarity=0.149 Sum_probs=51.0
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCe
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~ 115 (726)
.+..+..+.|.||.||||||.+-.+.-.. ..+.|.+- |..++|... . ..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~----------------------g~~i~~~~q-~------~~ 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD----------------------GITPVYKPQ-Y------ID 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEEC----------------------CEEEEEEcc-c------CC
Confidence 45678899999999999999876543211 11222221 112444311 1 00
Q ss_pred EEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHH
Q 004875 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQL 163 (726)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l 163 (726)
.+-|.-.+......+ ..+.+++++||-- ..++......+...+
T Consensus 72 ---LSgGq~qrv~laral-~~~p~lllLDEPt-s~LD~~~~~~l~~~l 114 (177)
T cd03222 72 ---LSGGELQRVAIAAAL-LRNATFYLFDEPS-AYLDIEQRLNAARAI 114 (177)
T ss_pred ---CCHHHHHHHHHHHHH-hcCCCEEEEECCc-ccCCHHHHHHHHHHH
Confidence 444544443322221 3377999999998 667765554444444
No 395
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.21 Score=54.04 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCChHhH
Q 004875 42 NRVTLIVGETGCGKSS 57 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt 57 (726)
-.++++.||||||||.
T Consensus 226 KSNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTL 241 (564)
T ss_pred cccEEEECCCCCchhH
Confidence 3589999999999994
No 396
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.01 E-value=0.67 Score=55.71 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+.+++.||+|||||+.+-.+..+.+
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999987655544444
No 397
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.01 E-value=0.086 Score=52.11 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=20.4
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+.++.+++|+||.||||||.+-.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999987544
No 398
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.98 E-value=0.42 Score=56.74 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=16.9
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
.++++.||+|+||||.+-.+.
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 378999999999998765443
No 399
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.96 E-value=0.12 Score=51.45 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=16.7
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.++|+|||||||||.+-.++
T Consensus 3 lilI~GptGSGKTTll~~ll 22 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMI 22 (198)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999998876544
No 400
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.94 E-value=0.58 Score=45.17 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=29.8
Q ss_pred EEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHh
Q 004875 45 TLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAK 90 (726)
Q Consensus 45 vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~ 90 (726)
++|.|++|||||+...+++.+.+ .+++++.+-+..-....+|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG-GPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-CCeEEEEccCcCCHHHHHHHHH
Confidence 68999999999999888887744 3555554433333445555444
No 401
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.81 E-value=0.49 Score=51.73 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=26.0
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhcCC--CcEEEec
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQ 75 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~~~--~~Iivt~ 75 (726)
.+..++|.|++|+||||.+.++..+... .+++++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4578999999999999998888765322 3555543
No 402
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.72 E-value=0.34 Score=54.43 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=26.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhcC--CCcEEEecc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQP 76 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~~--~~~Iivt~P 76 (726)
.+..++|.|++|+||||.+.+++.+.. ..+++++..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~ 116 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG 116 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 457899999999999999999876542 235555443
No 403
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.71 E-value=0.95 Score=48.62 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=25.1
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
..+.++|||++| .++......++|.+........+|++
T Consensus 112 ~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Ilv 149 (325)
T PRK08699 112 GGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLLV 149 (325)
T ss_pred CCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEEE
Confidence 489999999999 46666666677755443334444443
No 404
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.66 E-value=0.46 Score=45.95 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=59.5
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCC--
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS-- 114 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~-- 114 (726)
+..++.+.|.|+.||||||.+-...-.. ..+.|.+-- ..+.... ... ...++|...........+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~~~~--~~~--------~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG-KDIKKEP--EEV--------KRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEcccch--Hhh--------hccEEEEecCCccccCCcHH
Confidence 3477899999999999999776543221 122333211 1110000 000 123454422111111000
Q ss_pred eEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCC-CceEEEec
Q 004875 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMS 176 (726)
Q Consensus 115 ~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~-~lklIlmS 176 (726)
+-+..+.|...+......+ ..+.+++++||-- ..++.+....+.+.+..... ...+|+.|
T Consensus 92 ~~~~LS~G~~qrv~laral-~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~t 152 (173)
T cd03230 92 ENLKLSGGMKQRLALAQAL-LHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSS 152 (173)
T ss_pred HHhhcCHHHHHHHHHHHHH-HcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 0001455554444332222 2378999999998 67777655555444433322 23444444
No 405
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.64 E-value=0.4 Score=53.22 Aligned_cols=72 Identities=10% Similarity=0.170 Sum_probs=47.9
Q ss_pred HHHHHHHHH----cC-CcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecc
Q 004875 32 REKIVEKVL----EN-RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (726)
Q Consensus 32 Q~~il~~i~----~~-~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~ 106 (726)
|.+++..+. +| +.-++-|-||||||+.+...+.+-....+++. |...+|-|++..+...+.. ..|-|-|..
T Consensus 17 QP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~A-hNKTLAaQLy~Efk~fFP~---NaVEYFVSY 92 (663)
T COG0556 17 QPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQRPTLVLA-HNKTLAAQLYSEFKEFFPE---NAVEYFVSY 92 (663)
T ss_pred cHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhCCCeEEEe-cchhHHHHHHHHHHHhCcC---cceEEEeee
Confidence 444555443 33 57789999999999999888887776555555 5555556677766666654 356666654
Q ss_pred c
Q 004875 107 S 107 (726)
Q Consensus 107 ~ 107 (726)
-
T Consensus 93 Y 93 (663)
T COG0556 93 Y 93 (663)
T ss_pred c
Confidence 3
No 406
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.61 E-value=0.2 Score=50.84 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=21.9
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+.+..-+|++|+|||||||.+..++-..
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~yR 151 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGYR 151 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhccc
Confidence 3455678999999999998887776433
No 407
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.60 E-value=0.8 Score=51.54 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=20.9
Q ss_pred HHHHHHHcC---CcEEEEcCCCChHhHHHHHHH
Q 004875 34 KIVEKVLEN---RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 34 ~il~~i~~~---~~vii~a~TGSGKTt~ip~~l 63 (726)
.+...+..+ +..++.||.|+|||+.+-.+.
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 344455555 357899999999998765543
No 408
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.51 E-value=0.32 Score=48.48 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
.++|++||+|+||||.+...
T Consensus 49 P~liisGpPG~GKTTsi~~L 68 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCL 68 (333)
T ss_pred CceEeeCCCCCchhhHHHHH
Confidence 47899999999999876443
No 409
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.44 E-value=0.68 Score=55.67 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+.+++.||+|+|||+.+-.+.-
T Consensus 212 ~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHH
Confidence 36799999999999987654433
No 410
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=91.41 E-value=1.5 Score=46.99 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=38.7
Q ss_pred CCCCcHHHHHHHHHHHHcCC------cEEEEcCCCChHhHHHHHHHHhcCCCcEE
Q 004875 24 SSLPVMSLREKIVEKVLENR------VTLIVGETGCGKSSQVPQFLLAENMEPIL 72 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~~~------~vii~a~TGSGKTt~ip~~lle~~~~~Ii 72 (726)
+..|....|-..+..+..++ .++|-|.+|+|||..+-+++-......++
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw 60 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVW 60 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCccee
Confidence 45788999999999988664 34899999999999998888766544333
No 411
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.39 E-value=1 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
+.+++.||+|+|||+++-.+..+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHH
Confidence 56999999999999865554433
No 412
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=91.35 E-value=0.44 Score=56.51 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=29.8
Q ss_pred CCCCcHHHHHHHHHHHH----cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 24 SSLPVMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~----~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
..+..++.|.+.+..+. +++.++|.||||+|||..+....+
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al 56 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPAL 56 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHH
Confidence 34566788888886654 556799999999999955544433
No 413
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.26 E-value=1 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+.+++.||+|||||+.+-.+..+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999876554443
No 414
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.26 E-value=1.6 Score=47.95 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=19.6
Q ss_pred HHHHHHHHc-----CCcEEEEcCCCChHhHHH
Q 004875 33 EKIVEKVLE-----NRVTLIVGETGCGKSSQV 59 (726)
Q Consensus 33 ~~il~~i~~-----~~~vii~a~TGSGKTt~i 59 (726)
..+...+.+ .+.++|.|++|+|||.++
T Consensus 99 ~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 99 YAAAKAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred HHHHHHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 344444544 568999999999999654
No 415
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.26 E-value=0.56 Score=45.37 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=59.4
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCC--
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS-- 114 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~-- 114 (726)
+..++.+.|.||.||||||.+-.+.-.. ..+.|.+- ...+..... .... ..++|.. ++....+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~-g~~~~~~~~-~~~~--------~~i~~~~-q~~~~~~~tv~ 93 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD-GADISQWDP-NELG--------DHVGYLP-QDDELFSGSIA 93 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC-CEEcccCCH-HHHH--------hheEEEC-CCCccccCcHH
Confidence 3468899999999999999776554321 12333331 111110000 0011 1234431 111110000
Q ss_pred -eEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEeccC
Q 004875 115 -KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSAT 178 (726)
Q Consensus 115 -~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~-~~lklIlmSAT 178 (726)
.+ .+.|...+......+ +.+.+++|+||-= ..++.+....+.+.+.... ...-+|+.|--
T Consensus 94 ~~l--LS~G~~qrv~la~al-~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 94 ENI--LSGGQRQRLGLARAL-YGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred HHC--cCHHHHHHHHHHHHH-hcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 01 445554444333222 3478999999998 6777655544444443322 23344444443
No 416
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.24 E-value=0.7 Score=47.09 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.3
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
.+..++|.|++|+|||+...+++.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46789999999999999988887653
No 417
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.21 E-value=0.46 Score=54.02 Aligned_cols=144 Identities=18% Similarity=0.222 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHc---------CCcEEEEcCCCChHhHHHHHHHH-----hc-CCCcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 30 SLREKIVEKVLE---------NRVTLIVGETGCGKSSQVPQFLL-----AE-NMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 30 ~~Q~~il~~i~~---------~~~vii~a~TGSGKTt~ip~~ll-----e~-~~~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
|.|.-++..+.. -+.+++.-+=|.|||+.+....+ +. ....|+++.+.+-.|..+.+.+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 356667776652 14567778999999966544322 21 1246888888888777776665543321
Q ss_pred --ccCCeeeeeeccccccCCCCeEEEEChHHHHHHHHh--cCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 004875 95 --ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRD--RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (726)
Q Consensus 95 --~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~--~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~l 170 (726)
.+....+..+ .......|.+-..+..++.+.. +...-.+.+++|+||+|+. ..+-+...++.-...+++.
T Consensus 81 ~~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~--~~~~~~~~l~~g~~~r~~p 154 (477)
T PF03354_consen 81 SPELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAH--KDDELYDALESGMGARPNP 154 (477)
T ss_pred Chhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCC--CCHHHHHHHHhhhccCCCc
Confidence 1111111110 0011122332222222222211 2222338899999999953 2333555566655656665
Q ss_pred eE-EEeccCC
Q 004875 171 RV-VLMSATA 179 (726)
Q Consensus 171 kl-IlmSATl 179 (726)
.+ ++.||..
T Consensus 155 l~~~ISTag~ 164 (477)
T PF03354_consen 155 LIIIISTAGD 164 (477)
T ss_pred eEEEEeCCCC
Confidence 44 4455543
No 418
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.17 E-value=1.2 Score=53.57 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHhHHH
Q 004875 42 NRVTLIVGETGCGKSSQV 59 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~i 59 (726)
..++++.||+|+|||+.+
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 368999999999999754
No 419
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.12 E-value=0.53 Score=56.58 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=26.3
Q ss_pred CCcHHHHHHHHHHHH--------cCCcEEEEcCCCChHhHHHHHH
Q 004875 26 LPVMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 26 LPi~~~Q~~il~~i~--------~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.-.....+++++.+. .+..+++.||+|+|||+..-.+
T Consensus 325 ~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~i 369 (784)
T PRK10787 325 YGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSI 369 (784)
T ss_pred cCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHH
Confidence 344567777776554 2467899999999999765443
No 420
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.07 E-value=1.1 Score=48.48 Aligned_cols=52 Identities=19% Similarity=0.073 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 124 LLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 124 Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
+.+.+...+. ...+.++|||+||. ++......+||.+-.-+++..+|+.|..
T Consensus 120 l~~~~~~~~~-~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 120 LLDFCGVGTH-RGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred HHHHhccCCc-cCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 4444433332 34899999999993 4556667777776654445555555544
No 421
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.07 E-value=0.41 Score=48.39 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.++.+.|.|++|+|||+...+++..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH
Confidence 4689999999999999888877654
No 422
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.05 E-value=1.7 Score=41.14 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.0
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.+.|+|++|+||||.+....
T Consensus 7 ki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred EEEEeCCCCccHHHHHHHHH
Confidence 57999999999999876653
No 423
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.05 E-value=1.1 Score=47.86 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=27.8
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
..+.++|||+|| .++......+||.+-.-+++..+|+.|..
T Consensus 106 g~~KV~iI~~a~--~m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAE--RLTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 489999999999 34555667777776654455555554443
No 424
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.03 E-value=0.36 Score=47.00 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=20.6
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..++.+.|.|+.||||||.+-.+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3468899999999999999776554
No 425
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.68 Score=53.46 Aligned_cols=109 Identities=23% Similarity=0.401 Sum_probs=66.7
Q ss_pred CCCcHHHHHHHHHHHH--------cCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcC-Cc
Q 004875 25 SLPVMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-CE 95 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~--------~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~-~~ 95 (726)
..-+-.+.++|++.+. ++..+.++||+|.|||. ++.++|+.+.+++- ..
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS----------------------LgkSIA~al~RkfvR~s 382 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS----------------------LGKSIAKALGRKFVRIS 382 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh----------------------HHHHHHHHhCCCEEEEe
Confidence 3456678888988775 45678999999999995 34555555444331 23
Q ss_pred cCCeeeeeeccccccCCCCeE-EEEChHHHHHHHHhcCCCCCceeEEEEccccc--ccccccHHHHHHHHH
Q 004875 96 LGGEVGYHIGHSKHLSERSKI-VFKTAGVLLDEMRDRGLNALKYKVIILDEVHE--RSVESDLVLVCVKQL 163 (726)
Q Consensus 96 lg~~Vgy~v~~~~~~~~~~~I-iv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHe--R~~~~d~ll~~lk~l 163 (726)
+|+ +|.+.....+-+- +=+-||.+++-|..... .--++++||+|. .+...|.--++|.-+
T Consensus 383 LGG-----vrDEAEIRGHRRTYIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 383 LGG-----VRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cCc-----cccHHHhccccccccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhhc
Confidence 333 2444333332222 22459999998876432 335899999996 334556555555433
No 426
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=90.84 E-value=0.53 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.++.++|+||.||||||.+-.+.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHH
Confidence 45789999999999998776554
No 427
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.83 E-value=0.21 Score=54.41 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=18.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..++|+|||||||||.+-.++
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~ 170 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIY 170 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHH
Confidence 355678999999999998775543
No 428
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=0.77 Score=52.85 Aligned_cols=109 Identities=19% Similarity=0.331 Sum_probs=66.5
Q ss_pred CCcHHHHHHHHHHHH--------cCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhc-CCcc
Q 004875 26 LPVMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGR-NCEL 96 (726)
Q Consensus 26 LPi~~~Q~~il~~i~--------~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~-~~~l 96 (726)
--+..++++|++.|. +|+.+.++||+|-|||.. +.++|+.+.+++ -..+
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI----------------------~kSIA~ALnRkFfRfSv 471 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSI----------------------AKSIARALNRKFFRFSV 471 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccH----------------------HHHHHHHhCCceEEEec
Confidence 456788999999886 467889999999999952 345555444432 1223
Q ss_pred CCeeeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccc--ccccccHHHHHHHHH
Q 004875 97 GGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE--RSVESDLVLVCVKQL 163 (726)
Q Consensus 97 g~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHe--R~~~~d~ll~~lk~l 163 (726)
|+.. ...+...+.--.+=+-||.+.+.+..-.. .--+|.|||+|. ++...|.--++|..+
T Consensus 472 GG~t----DvAeIkGHRRTYVGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 472 GGMT----DVAEIKGHRRTYVGAMPGKIIQCLKKVKT---ENPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred cccc----cHHhhcccceeeeccCChHHHHHHHhhCC---CCceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 3321 11111111222333569999999876432 345799999996 455667665555443
No 429
>PLN02165 adenylate isopentenyltransferase
Probab=90.80 E-value=0.16 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=17.8
Q ss_pred HcCCcEEEEcCCCChHhHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~ 61 (726)
..+..++|+||||||||++...
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 4567899999999999976543
No 430
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.71 E-value=1 Score=43.75 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHH-HHHHHHhhcCCccCCeeeeeeccccccCC---
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVA-VAKMVAKGRNCELGGEVGYHIGHSKHLSE--- 112 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~-~a~~va~~~~~~lg~~Vgy~v~~~~~~~~--- 112 (726)
+..|+.+.|.|+.||||||.+-.+.-.. ..+.|.+--- .+.-.. ...... ..++|..........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~-~~~~~~~~~~~~~--------~~i~~~~q~~~~~~~~t~ 93 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE-DLTDLEDELPPLR--------RRIGMVFQDFALFPHLTV 93 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE-EccccchhHHHHh--------hcEEEEecCCccCCCCCH
Confidence 3478899999999999999776554221 1123433110 000000 000111 124444211111111
Q ss_pred CCeEEE-EChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHH
Q 004875 113 RSKIVF-KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL 164 (726)
Q Consensus 113 ~~~Iiv-~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~ 164 (726)
.-.+.+ .+.|...+......+ ..+..++|+||-- ..+|.+....+.+.+.
T Consensus 94 ~~~l~~~lS~G~~qr~~la~al-~~~p~llilDEP~-~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 94 LENIALGLSGGQQQRVALARAL-AMDPDVLLLDEPT-SALDPITRREVRALLK 144 (178)
T ss_pred HHheeecCCHHHHHHHHHHHHH-HCCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 111222 566665554433222 3478999999998 6777665555544443
No 431
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=90.71 E-value=0.32 Score=44.18 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCC
Q 004875 32 REKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME 69 (726)
Q Consensus 32 Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~ 69 (726)
-+.+.+.+..+.++++.|+-|+||||.+--++...+..
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34566667788899999999999999877666555443
No 432
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.67 E-value=0.19 Score=45.15 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=15.3
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
+++|+|++||||||..-..
T Consensus 1 vI~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4789999999999865443
No 433
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=90.65 E-value=0.46 Score=48.33 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+..+.|.|++|||||+...+++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999999988888754
No 434
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.60 E-value=0.66 Score=54.92 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=65.9
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHH---HHHhcC---CCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~---~lle~~---~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
+-|+++.|.+++.. ....++|.|..|||||+.+.. +++..+ ...|+++...+-||..+.+|+....|
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg----- 266 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG----- 266 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC-----
Confidence 46899999988863 345678999999999965543 344433 23788888888889999988876443
Q ss_pred eeeeeeccccccCCCCeEEEEChHHHHHHHH-hcCCCCCceeEEEEcccc
Q 004875 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEMR-DRGLNALKYKVIILDEVH 147 (726)
Q Consensus 99 ~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~-~~~l~l~~~~~VIIDEaH 147 (726)
...|.+.|--.+...+. ...-....++.+..|+..
T Consensus 267 --------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 267 --------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred --------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 13577888766654433 211111234545556544
No 435
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=90.57 E-value=0.14 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.1
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+|..+.|.||+||||||.+-.+
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999977544
No 436
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.56 E-value=0.86 Score=44.45 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.1
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..+.|.|+.||||||.+-.+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999776654
No 437
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.43 E-value=0.55 Score=56.71 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..+++.||+|+|||+.+-.+.
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA 368 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIA 368 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999997655444
No 438
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.41 E-value=0.51 Score=49.37 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=25.8
Q ss_pred HHHHHH-HcCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 34 KIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 34 ~il~~i-~~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.+++.+ ..++.++++||||||||..+-.++.+..
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCC
Confidence 444443 4678999999999999998877775433
No 439
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.41 E-value=0.23 Score=54.19 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.4
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+-.|+.+.|+||+|+||||.+-.+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~ 189 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIA 189 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHH
Confidence 4478999999999999998765543
No 440
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.38 E-value=0.22 Score=53.95 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+..++|+|||||||||.+-.++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999988765543
No 441
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.37 E-value=0.25 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.8
Q ss_pred cEEEEcCCCChHhHHHHHHHHhcC
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+++++|++||||||.+-.+....+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 479999999999998877765554
No 442
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.35 E-value=0.29 Score=52.22 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=25.1
Q ss_pred HHHHHHcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 35 IVEKVLENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 35 il~~i~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
+..++..+++++++|+|||||||++-..+..
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall~~ 166 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALLDF 166 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4556678899999999999999987666544
No 443
>PF12846 AAA_10: AAA-like domain
Probab=90.33 E-value=0.25 Score=51.95 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC--CCcEEEecch
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPR 77 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~--~~~Iivt~Pr 77 (726)
|++++|+|+||||||+.+-.++.+.. ...+++.-|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 57899999999999988776554321 1345555553
No 444
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.33 E-value=1.2 Score=54.30 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHhHHH
Q 004875 44 VTLIVGETGCGKSSQV 59 (726)
Q Consensus 44 ~vii~a~TGSGKTt~i 59 (726)
.++++||||+|||+..
T Consensus 541 ~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 541 SFLFSGPTGVGKTELT 556 (821)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4789999999999654
No 445
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.32 E-value=0.91 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.4
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|+.+.|+|++||||||.+-..+
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~ 397 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALL 397 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999876654
No 446
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.20 E-value=3 Score=47.21 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=47.2
Q ss_pred cCCCCeEEEEChHHHHHHHHhc---CCC---CCcee-EEEEcccccccccc-----c------HHHHHHHHHHhcCCCce
Q 004875 110 LSERSKIVFKTAGVLLDEMRDR---GLN---ALKYK-VIILDEVHERSVES-----D------LVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 110 ~~~~~~Iiv~T~g~Ll~~l~~~---~l~---l~~~~-~VIIDEaHeR~~~~-----d------~ll~~lk~l~~~~~~lk 171 (726)
.+....|.|+|.+.|...+... .+. +.+-. +++-||+|+-...+ | -+...++..+..+++--
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~ 157 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNL 157 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCce
Confidence 3556789999999887765432 111 12333 45669999522211 1 12233455556677878
Q ss_pred EEEeccCCC--HHHHHHHHh
Q 004875 172 VVLMSATAD--ITKYRDYFR 189 (726)
Q Consensus 172 lIlmSATl~--~~~~~~~f~ 189 (726)
++..|||.+ .+....|-+
T Consensus 158 ~lef~at~~k~k~v~~ky~d 177 (812)
T COG3421 158 LLEFSATIPKEKSVEDKYED 177 (812)
T ss_pred eehhhhcCCccccHHHHhcc
Confidence 899999974 334455544
No 447
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=90.18 E-value=0.36 Score=46.90 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=24.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHH--hcCCCcEEEecc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQP 76 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll--e~~~~~Iivt~P 76 (726)
+-.++.||-+||||+.+.+.+. +....++++..|
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp 37 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKP 37 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred EEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4568999999999998887763 334456666666
No 448
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.12 E-value=0.42 Score=51.54 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=25.0
Q ss_pred CCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 135 ALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 135 l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
..++.++||||+|. ++.+....++|.+-.-+++..+|+.+
T Consensus 108 ~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 108 ESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 34889999999993 34445555666555444445555533
No 449
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=90.07 E-value=0.47 Score=47.33 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=19.7
Q ss_pred HHHHHHcC-C-cEEEEcCCCChHhHHHHHH
Q 004875 35 IVEKVLEN-R-VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 35 il~~i~~~-~-~vii~a~TGSGKTt~ip~~ 62 (726)
.++.+.++ . ++++.||+|+||||++--+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdi 157 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDI 157 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHH
Confidence 34444433 3 5899999999999986443
No 450
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=1.2 Score=49.72 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=36.2
Q ss_pred ceeEEEEccccc----ccccc-cHHHHHHHHHHh----cCCCceEEEeccCCCHHHHHHHHhhcCCC
Q 004875 137 KYKVIILDEVHE----RSVES-DLVLVCVKQLLL----KKNDLRVVLMSATADITKYRDYFRDLGRG 194 (726)
Q Consensus 137 ~~~~VIIDEaHe----R~~~~-d~ll~~lk~l~~----~~~~lklIlmSATl~~~~~~~~f~~~~~~ 194 (726)
...+|.|||+|- |.... .+....+.+++. ...+--||++.||--++.+..-+-..|+-
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRF 462 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRF 462 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCcc
Confidence 678999999993 32221 133333444442 34456799999997777777776554443
No 451
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.90 E-value=0.25 Score=56.31 Aligned_cols=134 Identities=18% Similarity=0.249 Sum_probs=0.0
Q ss_pred CCCCCCCCccCCCCCCcHHHHHHHHHHHH-----cCCcEEEEcCCCChHhHHHHHHHHhcCCC------------cEEEe
Q 004875 12 SSYSSPFTSPEFSSLPVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQFLLAENME------------PILCT 74 (726)
Q Consensus 12 ~~~~~~~~~~~r~~LPi~~~Q~~il~~i~-----~~~~vii~a~TGSGKTt~ip~~lle~~~~------------~Iivt 74 (726)
+........+.-..+++.++|...+..+. .++--|+...-|-|||..++..++..... .-+++
T Consensus 310 P~et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII 389 (901)
T KOG4439|consen 310 PGETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLII 389 (901)
T ss_pred CCcccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEe
Q ss_pred cchHHHHHHHHHHHHhhcCCccCCeeeeeeccc-cccC----CCCeEEEEChHHHHH-------HHHhcCCCCC-ceeEE
Q 004875 75 QPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-KHLS----ERSKIVFKTAGVLLD-------EMRDRGLNAL-KYKVI 141 (726)
Q Consensus 75 ~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~-~~~~----~~~~Iiv~T~g~Ll~-------~l~~~~l~l~-~~~~V 141 (726)
.|-.+. -+.+..++.......-...-|. +.. .... ...+|+++|.....+ .-.+....+. .++.|
T Consensus 390 ~PaSli-~qW~~Ev~~rl~~n~LsV~~~H-G~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RV 467 (901)
T KOG4439|consen 390 CPASLI-HQWEAEVARRLEQNALSVYLYH-GPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRV 467 (901)
T ss_pred CcHHHH-HHHHHHHHHHHhhcceEEEEec-CCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHh
Q ss_pred EEcccc
Q 004875 142 ILDEVH 147 (726)
Q Consensus 142 IIDEaH 147 (726)
|+||||
T Consensus 468 ILDEAH 473 (901)
T KOG4439|consen 468 ILDEAH 473 (901)
T ss_pred hhhhhh
No 452
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.89 E-value=0.72 Score=53.24 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=16.5
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+++|||.|-||||..-.+
T Consensus 327 KilLL~GppGlGKTTLAHVi 346 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVI 346 (877)
T ss_pred ceEEeecCCCCChhHHHHHH
Confidence 68899999999999865433
No 453
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=1.1 Score=50.88 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=38.5
Q ss_pred ceeEEEEcccccccccc-----cHHHHHHHHHHhc--------CCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEec
Q 004875 137 KYKVIILDEVHERSVES-----DLVLVCVKQLLLK--------KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIP 203 (726)
Q Consensus 137 ~~~~VIIDEaHeR~~~~-----d~ll~~lk~l~~~--------~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~ 203 (726)
...+|+|||++--...- +.-.-++.+++.. ...-.|++..||--++.+.--+...|+-+.-..+.+|
T Consensus 282 aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 282 APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVP 361 (802)
T ss_pred CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCC
Confidence 67899999999422221 2222233333321 1134688899996555566666666655444445555
Q ss_pred CC
Q 004875 204 ST 205 (726)
Q Consensus 204 ~~ 205 (726)
..
T Consensus 362 ~e 363 (802)
T KOG0733|consen 362 SE 363 (802)
T ss_pred ch
Confidence 53
No 454
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.82 E-value=1.6 Score=50.98 Aligned_cols=21 Identities=43% Similarity=0.860 Sum_probs=17.4
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+++.||+|+||||.+-.+.
T Consensus 111 ~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 459999999999998776554
No 455
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.77 E-value=0.87 Score=55.49 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHhHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~ 61 (726)
..++++.||+|+|||+.+-.
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred cCceEEECCCCCCHHHHHHH
Confidence 35899999999999976533
No 456
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=89.77 E-value=1 Score=43.94 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=58.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh--cCCCcEEEecchHHHHHHHHHHHHhhcCCccC-CeeeeeeccccccCCCCeEEE
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELG-GEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle--~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg-~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
++-.+++||-.||||+-+.+-... ....++++.-|. + +...| +.|.-.++. ...-+.|
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~------i--------D~R~~~~~V~Sr~G~-----~~~A~~i 64 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA------I--------DTRYGVGKVSSRIGL-----SSEAVVI 64 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc------c--------ccccccceeeeccCC-----cccceec
Confidence 456789999999999887776543 233345555441 1 11111 112222111 1223444
Q ss_pred EChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHH
Q 004875 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADIT 182 (726)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~ 182 (726)
-.+.-+...+...... ..+++|.||||+ -++.+. ...+.++.. ++-+-++-+.++.+
T Consensus 65 ~~~~~i~~~i~~~~~~-~~~~~v~IDEaQ--F~~~~~-v~~l~~lad---~lgi~Vi~~GL~~D 121 (201)
T COG1435 65 PSDTDIFDEIAALHEK-PPVDCVLIDEAQ--FFDEEL-VYVLNELAD---RLGIPVICYGLDTD 121 (201)
T ss_pred CChHHHHHHHHhcccC-CCcCEEEEehhH--hCCHHH-HHHHHHHHh---hcCCEEEEeccccc
Confidence 4555666666543211 148999999999 233332 233333332 22344555666543
No 457
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.76 E-value=1.1 Score=45.61 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=28.1
Q ss_pred ceeEEEEcccccc----------cccccHHHHHHHHHHhcCCCceEEEeccCCCHHHH
Q 004875 137 KYKVIILDEVHER----------SVESDLVLVCVKQLLLKKNDLRVVLMSATADITKY 184 (726)
Q Consensus 137 ~~~~VIIDEaHeR----------~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~~~ 184 (726)
...+|.|||.+-- +--++...++|..+-....+--++...||-+++.+
T Consensus 210 aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 210 APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 5688999999942 22223344455555444445557777888544433
No 458
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=89.60 E-value=0.82 Score=54.28 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHH---HHHhc-CC--CcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLAE-NM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~---~lle~-~~--~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
+.+.|.+++... +..++|.|..|||||+.+.. ++++. +. ..|+++..++-||..+..|+...++..
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~------ 74 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK------ 74 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc------
Confidence 567888887753 46778889999999955433 34443 32 468888888888888888888754321
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcC-CCC-CceeEEEEcccc
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRG-LNA-LKYKVIILDEVH 147 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-l~l-~~~~~VIIDEaH 147 (726)
....+.++|--.+...+.... ..+ ..-+.-|+|+.+
T Consensus 75 ----------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 75 ----------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred ----------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 113467888766554333211 000 022455778776
No 459
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=89.54 E-value=0.68 Score=51.69 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=16.8
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+++.||+|+|||+.+-.+.
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA 238 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVA 238 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999997654443
No 460
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=89.52 E-value=2.1 Score=45.79 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=20.6
Q ss_pred HHHHHHHHcC---CcEEEEcCCCChHhHHHHHH
Q 004875 33 EKIVEKVLEN---RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 33 ~~il~~i~~~---~~vii~a~TGSGKTt~ip~~ 62 (726)
.++...+..+ +..++.||-|+|||+.+-.+
T Consensus 14 ~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~ 46 (313)
T PRK05564 14 NRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEI 46 (313)
T ss_pred HHHHHHHHcCCCCceEEeECCCCCCHHHHHHHH
Confidence 3344455554 35699999999999765444
No 461
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.50 E-value=0.4 Score=48.59 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc----CCCcEEEe
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCT 74 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~----~~~~Iivt 74 (726)
.+..++|.|++|+|||+...|++.+. +.+.++++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 46899999999999999988888653 44444444
No 462
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=89.49 E-value=1.5 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=19.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+.++++||+|+|||+.+-.+.-+.+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999987666554444
No 463
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=0.56 Score=49.82 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHhHH
Q 004875 42 NRVTLIVGETGCGKSSQ 58 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ 58 (726)
-+-|++-||+|+|||.+
T Consensus 185 PKGVLLYGPPGTGKTLL 201 (406)
T COG1222 185 PKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CCceEeeCCCCCcHHHH
Confidence 37899999999999954
No 464
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=2.9 Score=48.79 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=31.0
Q ss_pred ceeEEEEccccc----cccccc---HHHHHHHHHHh----cC--CCceEEEeccCCCHHHHHHHH
Q 004875 137 KYKVIILDEVHE----RSVESD---LVLVCVKQLLL----KK--NDLRVVLMSATADITKYRDYF 188 (726)
Q Consensus 137 ~~~~VIIDEaHe----R~~~~d---~ll~~lk~l~~----~~--~~lklIlmSATl~~~~~~~~f 188 (726)
...+|.+||.|- |+...| .+.-++.+++. .. +.-.+.++.||--++.+..-+
T Consensus 764 ~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpAL 828 (953)
T KOG0736|consen 764 APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPAL 828 (953)
T ss_pred CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhh
Confidence 678999999993 555554 33444444443 22 345688889995444443333
No 465
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.36 E-value=0.3 Score=47.43 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
|+.++|.||+||||||++-.+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999765554
No 466
>PRK13695 putative NTPase; Provisional
Probab=89.35 E-value=2.4 Score=40.90 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.++|+|+.|+||||.+-.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999877653
No 467
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=89.31 E-value=2.4 Score=45.60 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHH
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip 60 (726)
....+++-.....+..|+|.|++|+||++..-
T Consensus 9 ~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr 40 (329)
T TIGR02974 9 LEVLEQVSRLAPLDRPVLIIGERGTGKELIAA 40 (329)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCChHHHHHH
Confidence 34556666666677889999999999997543
No 468
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=89.25 E-value=0.31 Score=58.62 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHh--HHHHHHHHhc-CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKT--t~ip~~lle~-~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
+-.|++| ++-.+.=++--|.-+.||=||| ..+|.++... |.+.-+||.---+| ..=+++.+... .-+|-+||.
T Consensus 168 m~~yDVQ--liGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA-~RDaewmgply-~fLGLsvg~ 243 (1112)
T PRK12901 168 MVHYDVQ--LIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLA-KRDSEWMGPLY-EFHGLSVDC 243 (1112)
T ss_pred CcccchH--HhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhh-hccHHHHHHHH-HHhCCceee
Confidence 4445555 7777766777799999999999 3456666544 33445555543333 22232222211 134555664
Q ss_pred eecc-----ccccCCCCeEEEEChHHH-----HHHHHh--cCCCCCceeEEEEcccc
Q 004875 103 HIGH-----SKHLSERSKIVFKTAGVL-----LDEMRD--RGLNALKYKVIILDEVH 147 (726)
Q Consensus 103 ~v~~-----~~~~~~~~~Iiv~T~g~L-----l~~l~~--~~l~l~~~~~VIIDEaH 147 (726)
.... +.+..=.++|+|+|..-| .+-|.. +......+.+.||||||
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 3221 111122579999997433 222221 11122368899999999
No 469
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.24 E-value=1.4 Score=53.58 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHhHHH
Q 004875 43 RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~i 59 (726)
.+++++||.|+|||+.+
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 68999999999999754
No 470
>CHL00195 ycf46 Ycf46; Provisional
Probab=89.19 E-value=2.3 Score=48.24 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHhHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~ 61 (726)
+.+++.||+|||||+.+-.
T Consensus 260 kGILL~GPpGTGKTllAka 278 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKA 278 (489)
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 6799999999999965533
No 471
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=89.10 E-value=0.53 Score=43.41 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 33 EKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 33 ~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
+.+.+.+..+..+++.|+.|+||||.+-.++..
T Consensus 13 ~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 13 KAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455567789999999999999877555443
No 472
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=88.99 E-value=0.42 Score=53.17 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHH-------cCCcEEEEcCCCChHhHHHH
Q 004875 29 MSLREKIVEKVL-------ENRVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 29 ~~~Q~~il~~i~-------~~~~vii~a~TGSGKTt~ip 60 (726)
+++|.++.+++. .|+.+.|+||.||||||.+-
T Consensus 12 r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 12 RKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred hHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 456777766654 57899999999999999887
No 473
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=88.96 E-value=0.12 Score=55.43 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhH
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSS 57 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt 57 (726)
+.+|.++++.|+.+.+|+..++||||||-
T Consensus 26 tdvqaeaiplilgggdvlmaaetgsgktg 54 (725)
T KOG0349|consen 26 TDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (725)
T ss_pred cccccccccEEecCCcEEEEeccCCCCcc
Confidence 67899999999999999999999999993
No 474
>PRK05973 replicative DNA helicase; Provisional
Probab=88.96 E-value=0.36 Score=49.18 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=26.1
Q ss_pred HHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 34 KIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 34 ~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
++..-+..+..++|.|++|+|||+...+++.+.
T Consensus 56 ~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 56 ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344445577899999999999999888887654
No 475
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=88.89 E-value=1 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=20.7
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
|..+..+.|+|++||||||.+-.+.
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~ 51 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFL 51 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999998776553
No 476
>PRK13764 ATPase; Provisional
Probab=88.87 E-value=0.44 Score=55.00 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=22.3
Q ss_pred HHHHHHH-cCCcEEEEcCCCChHhHHHHHHH
Q 004875 34 KIVEKVL-ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 34 ~il~~i~-~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+++.+. .+++++|+|+|||||||.+-.++
T Consensus 248 ~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~ 278 (602)
T PRK13764 248 KLKERLEERAEGILIAGAPGAGKSTFAQALA 278 (602)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 4455553 46789999999999998775543
No 477
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.86 E-value=1.4 Score=53.58 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHhHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip 60 (726)
.+++++.||+|+|||+.+-
T Consensus 200 ~~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAE 218 (821)
T ss_pred cCCeEEECCCCCCHHHHHH
Confidence 3689999999999997653
No 478
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.85 E-value=0.36 Score=49.70 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=20.9
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..|+.++|.||.|+||||.+-.+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~ 37 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIA 37 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4588999999999999999775544
No 479
>PRK00300 gmk guanylate kinase; Provisional
Probab=88.66 E-value=0.35 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=19.7
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.++.++|+||+||||||++-.+.-
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999987655543
No 480
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=88.64 E-value=0.27 Score=43.41 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.8
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..++.+.|.||+||||||.+...+
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 356789999999999999876654
No 481
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.62 E-value=3.8 Score=50.12 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHhHHHH
Q 004875 44 VTLIVGETGCGKSSQVP 60 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip 60 (726)
.+++.||||+|||+..-
T Consensus 597 ~~Lf~Gp~GvGKt~lA~ 613 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAK 613 (852)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999996543
No 482
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.60 E-value=0.22 Score=49.75 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.3
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcC
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~ 167 (726)
.+.+++|+||-| -.++.|.+..+-+.+-..+
T Consensus 161 lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr 191 (251)
T COG0396 161 LEPKLAILDEPD-SGLDIDALKIVAEGINALR 191 (251)
T ss_pred cCCCEEEecCCC-cCccHHHHHHHHHHHHHHh
Confidence 378999999999 7899998877766655443
No 483
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=88.58 E-value=0.58 Score=47.70 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=26.8
Q ss_pred HHHcCC-cEEEEcCCCChHhHHHHHHHHhcCC--CcEEEecc
Q 004875 38 KVLENR-VTLIVGETGCGKSSQVPQFLLAENM--EPILCTQP 76 (726)
Q Consensus 38 ~i~~~~-~vii~a~TGSGKTt~ip~~lle~~~--~~Iivt~P 76 (726)
.+.... .++|+|++|||||+.+.-.+..... ..|++..|
T Consensus 8 ~l~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 8 SLLKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 344443 7899999999999988777765432 45555544
No 484
>PRK08233 hypothetical protein; Provisional
Probab=88.53 E-value=0.52 Score=45.68 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
..+.|.|++||||||+.-......
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 578889999999999876655443
No 485
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=2 Score=50.82 Aligned_cols=79 Identities=27% Similarity=0.484 Sum_probs=43.9
Q ss_pred cEEEEcCCCChHhHH---HHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEEC
Q 004875 44 VTLIVGETGCGKSSQ---VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKT 120 (726)
Q Consensus 44 ~vii~a~TGSGKTt~---ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T 120 (726)
+.+..||||.|||.. +..++..... .++-.-..+- .-.-.+++..|.+.| .|||..
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~-aliR~DMSEy---~EkHsVSrLIGaPPG-YVGyee---------------- 581 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQ-ALIRIDMSEY---MEKHSVSRLIGAPPG-YVGYEE---------------- 581 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCc-cceeechHHH---HHHHHHHHHhCCCCC-Cceecc----------------
Confidence 678999999999943 3444443222 2222221111 112234455565543 477762
Q ss_pred hHHHHHHHHhcCCCCCceeEEEEccccc
Q 004875 121 AGVLLDEMRDRGLNALKYKVIILDEVHE 148 (726)
Q Consensus 121 ~g~Ll~~l~~~~l~l~~~~~VIIDEaHe 148 (726)
-|.|.....++ -|++|.+||+..
T Consensus 582 GG~LTEaVRr~-----PySViLlDEIEK 604 (786)
T COG0542 582 GGQLTEAVRRK-----PYSVILLDEIEK 604 (786)
T ss_pred ccchhHhhhcC-----CCeEEEechhhh
Confidence 13455555544 489999999873
No 486
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.44 E-value=0.37 Score=44.75 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=16.1
Q ss_pred EEEEcCCCChHhHHHHHHHH
Q 004875 45 TLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 45 vii~a~TGSGKTt~ip~~ll 64 (726)
++|+|||||||||++-.+.-
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999997655543
No 487
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.42 E-value=0.54 Score=50.93 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=27.6
Q ss_pred HHHHHHHHHHH---cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 30 SLREKIVEKVL---ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 30 ~~Q~~il~~i~---~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
..-.++++.+. ++|.++|.||.|+||||.+-.++.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~ 155 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAA 155 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHH
Confidence 44455777765 789999999999999998877543
No 488
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=88.34 E-value=0.19 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=21.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
.|.-+|+.|||||||||.+.-|-++.
T Consensus 272 ~GElTvlTGpTGsGKTTFlsEYsLDL 297 (514)
T KOG2373|consen 272 PGELTVLTGPTGSGKTTFLSEYSLDL 297 (514)
T ss_pred CCceEEEecCCCCCceeEehHhhHHH
Confidence 34678999999999999888876664
No 489
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=88.32 E-value=1.8 Score=51.38 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHH---HHhc-CC--CcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAE-NM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~---lle~-~~--~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
+.+-|.+++.. ....++|.|..|||||+.+..- +++. +. ..|+++...+-+|..+-+|+...++..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 45678887764 3568899999999999655443 4432 32 356666666667778888887754311
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcCCC-C-CceeEEEEccccc
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLN-A-LKYKVIILDEVHE 148 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~-l-~~~~~VIIDEaHe 148 (726)
...++.+.|-..|...+...... + ..-..-|+||...
T Consensus 74 ----------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 ----------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred ----------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 12467788877665544332100 0 0223457888873
No 490
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.27 E-value=0.52 Score=43.61 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=18.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHhcC
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.|++.||+|+|||+.+-.+....+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999987655544433
No 491
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.20 E-value=0.51 Score=47.13 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+++.++|.||.|+||||.+-..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i 49 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQI 49 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999866544
No 492
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.16 E-value=1.5 Score=53.53 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCChHhHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ 62 (726)
.++.+++||+|+|||+.+-.+
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~l 214 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGL 214 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHH
Confidence 368999999999999766433
No 493
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=88.11 E-value=0.32 Score=43.90 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.1
Q ss_pred EEEEcCCCChHhHHHHH
Q 004875 45 TLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 45 vii~a~TGSGKTt~ip~ 61 (726)
|+|.|.+||||||..-.
T Consensus 1 I~i~G~~GsGKtTia~~ 17 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKE 17 (129)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred CEEECCCCCCHHHHHHH
Confidence 68999999999986533
No 494
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.04 E-value=2.4 Score=50.84 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHhHHH
Q 004875 42 NRVTLIVGETGCGKSSQV 59 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~i 59 (726)
..++++.||+|+|||+.+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999764
No 495
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=88.01 E-value=1.1 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|+.+.|+|++||||||.+-...
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~ 512 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLL 512 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999775553
No 496
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=88.00 E-value=0.27 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.678 Sum_probs=20.2
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+|..+++.||+||||||.+-.+
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~I 49 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMI 49 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457788999999999999987555
No 497
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=2.1 Score=49.01 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=59.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEEChH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAG 122 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g 122 (726)
+-|++.||.|||||+.+-.+.-+.+..-+-+--| +-+.. .|+--+
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgp---------EL~sk--------------------------~vGeSE 513 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGP---------ELFSK--------------------------YVGESE 513 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCH---------HHHHH--------------------------hcCchH
Confidence 6899999999999986544433333222211111 00111 011234
Q ss_pred HHHHHHHhcCCCCCceeEEEEcccc----cccccc-cHHHHHHHHHH----hcCCCceEEEeccCCCHHHHHHHHhhcCC
Q 004875 123 VLLDEMRDRGLNALKYKVIILDEVH----ERSVES-DLVLVCVKQLL----LKKNDLRVVLMSATADITKYRDYFRDLGR 193 (726)
Q Consensus 123 ~Ll~~l~~~~l~l~~~~~VIIDEaH----eR~~~~-d~ll~~lk~l~----~~~~~lklIlmSATl~~~~~~~~f~~~~~ 193 (726)
..++.+.+..-. ....+|.+||++ +|+-+. +.-.-++.+++ .....-.|++.-||--++.+..-.-..|+
T Consensus 514 r~ir~iF~kAR~-~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGR 592 (693)
T KOG0730|consen 514 RAIREVFRKARQ-VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGR 592 (693)
T ss_pred HHHHHHHHHHhh-cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcc
Confidence 555655442211 245899999999 464222 22333333333 22333478899999555555544433333
No 498
>PRK14530 adenylate kinase; Provisional
Probab=87.78 E-value=0.49 Score=47.59 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.+..++|.|++||||||+.-.+.-..+
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999998777654444
No 499
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.71 E-value=0.61 Score=52.14 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcCC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAENM 68 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~~ 68 (726)
++.++|+||+||||||.+-.+.-+.+.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 579999999999999987666655554
No 500
>PRK07261 topology modulation protein; Provisional
Probab=87.64 E-value=0.58 Score=45.26 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.0
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
.++|+|++||||||..-..
T Consensus 2 ri~i~G~~GsGKSTla~~l 20 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKL 20 (171)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999976554
Done!