Query 004875
Match_columns 726
No_of_seqs 515 out of 3060
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 1E-82 3.5E-87 752.1 50.7 548 23-663 90-658 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 9.3E-53 3.2E-57 497.9 37.7 462 27-531 30-552 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 1.5E-50 5E-55 477.8 39.9 446 27-528 25-529 (702)
4 2zj8_A DNA helicase, putative 100.0 1.1E-47 3.8E-52 454.5 34.3 446 27-532 23-538 (720)
5 3eiq_A Eukaryotic initiation f 100.0 1.1E-37 3.7E-42 344.5 22.5 316 26-404 61-390 (414)
6 3o8b_A HCV NS3 protease/helica 100.0 5.8E-38 2E-42 358.8 18.0 300 23-403 213-516 (666)
7 3l9o_A ATP-dependent RNA helic 100.0 7.7E-37 2.6E-41 372.5 28.9 352 24-401 181-597 (1108)
8 2db3_A ATP-dependent RNA helic 100.0 6E-36 2E-40 333.3 30.7 309 28-401 79-407 (434)
9 1s2m_A Putative ATP-dependent 100.0 1E-35 3.6E-40 327.3 30.6 313 28-405 44-369 (400)
10 4f92_B U5 small nuclear ribonu 100.0 1.2E-35 4.3E-40 373.7 35.3 453 28-526 80-630 (1724)
11 3fht_A ATP-dependent RNA helic 100.0 1.1E-35 3.9E-40 327.8 30.5 321 27-402 47-380 (412)
12 3pey_A ATP-dependent RNA helic 100.0 1E-35 3.4E-40 326.0 28.8 319 27-401 27-356 (395)
13 2i4i_A ATP-dependent RNA helic 100.0 2.8E-35 9.6E-40 325.5 30.4 313 27-404 37-386 (417)
14 2j0s_A ATP-dependent RNA helic 100.0 7.3E-36 2.5E-40 329.8 23.9 314 28-404 60-386 (410)
15 4f92_B U5 small nuclear ribonu 100.0 1.4E-35 4.8E-40 373.3 29.0 439 28-516 927-1451(1724)
16 1hv8_A Putative ATP-dependent 100.0 4.7E-35 1.6E-39 317.4 27.6 310 27-405 28-349 (367)
17 1xti_A Probable ATP-dependent 100.0 1.4E-34 4.8E-39 317.0 29.3 314 28-402 31-358 (391)
18 4a4z_A Antiviral helicase SKI2 100.0 4.2E-35 1.4E-39 354.3 27.4 352 26-399 38-490 (997)
19 2xgj_A ATP-dependent RNA helic 100.0 6.9E-34 2.4E-38 343.7 37.1 351 26-401 85-499 (1010)
20 2z83_A Helicase/nucleoside tri 100.0 2.2E-36 7.6E-41 338.6 13.4 289 36-401 15-313 (459)
21 3fmp_B ATP-dependent RNA helic 100.0 1.3E-35 4.5E-40 334.9 18.4 319 28-402 115-447 (479)
22 2jlq_A Serine protease subunit 100.0 4.6E-35 1.6E-39 327.3 22.2 288 35-399 11-309 (451)
23 2z0m_A 337AA long hypothetical 100.0 2.3E-34 7.9E-39 308.4 25.6 300 27-400 16-322 (337)
24 3i5x_A ATP-dependent RNA helic 100.0 1E-34 3.5E-39 334.2 23.9 325 27-403 94-451 (563)
25 2ykg_A Probable ATP-dependent 100.0 2.2E-34 7.5E-39 339.8 27.2 378 25-426 11-551 (696)
26 1fuu_A Yeast initiation factor 100.0 2.4E-35 8.3E-40 323.2 16.0 317 27-406 43-371 (394)
27 3sqw_A ATP-dependent RNA helic 100.0 3.2E-34 1.1E-38 331.0 26.0 323 28-403 44-400 (579)
28 2v1x_A ATP-dependent DNA helic 100.0 3.7E-34 1.3E-38 328.9 26.2 312 27-405 44-378 (591)
29 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-33 6E-38 319.9 25.6 305 28-404 26-346 (523)
30 3fho_A ATP-dependent RNA helic 100.0 1.5E-34 5.1E-39 328.3 15.0 317 28-401 142-470 (508)
31 3tbk_A RIG-I helicase domain; 100.0 6.4E-33 2.2E-37 317.8 27.7 355 25-403 2-509 (555)
32 3rc3_A ATP-dependent RNA helic 100.0 1.6E-33 5.4E-38 325.8 22.0 308 40-428 153-474 (677)
33 2whx_A Serine protease/ntpase/ 100.0 3.7E-34 1.3E-38 330.0 16.6 299 22-399 169-476 (618)
34 4a2p_A RIG-I, retinoic acid in 100.0 1.3E-32 4.6E-37 315.5 27.4 356 25-404 5-511 (556)
35 1wp9_A ATP-dependent RNA helic 100.0 5.2E-33 1.8E-37 311.9 22.6 353 24-403 6-477 (494)
36 3oiy_A Reverse gyrase helicase 100.0 6.1E-33 2.1E-37 307.1 15.5 299 26-401 20-365 (414)
37 4gl2_A Interferon-induced heli 100.0 4.9E-33 1.7E-37 328.4 14.2 352 23-399 3-516 (699)
38 4a2q_A RIG-I, retinoic acid in 100.0 4E-31 1.4E-35 315.9 28.7 354 25-403 246-751 (797)
39 2v6i_A RNA helicase; membrane, 100.0 2E-31 6.8E-36 296.0 23.5 282 41-399 1-288 (431)
40 1yks_A Genome polyprotein [con 100.0 8.3E-32 2.8E-36 299.7 19.0 286 38-399 4-297 (440)
41 4a2w_A RIG-I, retinoic acid in 100.0 1.8E-30 6.2E-35 313.9 27.3 356 25-404 246-752 (936)
42 2wv9_A Flavivirin protease NS2 100.0 3.5E-31 1.2E-35 307.1 20.0 290 34-399 227-531 (673)
43 3i4u_A ATP-dependent RNA helic 100.0 3.2E-30 1.1E-34 265.5 15.3 178 435-664 2-180 (270)
44 2eyq_A TRCF, transcription-rep 100.0 5.5E-29 1.9E-33 305.2 24.7 299 28-401 604-922 (1151)
45 1gm5_A RECG; helicase, replica 100.0 6E-30 2.1E-34 300.3 13.8 300 26-399 367-695 (780)
46 2fwr_A DNA repair protein RAD2 100.0 3E-29 1E-33 282.3 16.8 323 24-401 90-454 (472)
47 2oca_A DAR protein, ATP-depend 100.0 2E-28 6.8E-33 278.3 22.2 319 26-399 112-453 (510)
48 4ddu_A Reverse gyrase; topoiso 100.0 4.4E-29 1.5E-33 304.2 14.8 270 26-356 77-388 (1104)
49 1gku_B Reverse gyrase, TOP-RG; 99.9 8.3E-28 2.8E-32 293.1 14.1 261 30-355 59-352 (1054)
50 3h1t_A Type I site-specific re 99.9 3.1E-27 1.1E-31 273.3 17.4 319 25-391 176-545 (590)
51 1tf5_A Preprotein translocase 99.9 4.8E-26 1.7E-30 262.5 24.2 105 277-402 433-546 (844)
52 3llm_A ATP-dependent RNA helic 99.9 2E-26 6.7E-31 234.9 15.1 165 23-190 57-229 (235)
53 2fsf_A Preprotein translocase 99.9 4.8E-25 1.6E-29 253.5 21.5 105 277-402 442-584 (853)
54 1nkt_A Preprotein translocase 99.9 1.8E-24 6.2E-29 248.8 22.7 341 26-401 110-617 (922)
55 3eaq_A Heat resistant RNA depe 99.9 6E-24 2.1E-28 212.8 8.3 165 276-460 31-211 (212)
56 1z63_A Helicase of the SNF2/RA 99.9 4.4E-22 1.5E-26 225.4 24.0 344 25-402 35-454 (500)
57 3dmq_A RNA polymerase-associat 99.9 6.5E-23 2.2E-27 248.3 18.0 107 276-401 503-615 (968)
58 3i32_A Heat resistant RNA depe 99.9 2.7E-23 9.2E-28 218.2 7.9 170 276-465 28-213 (300)
59 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.8E-21 1.3E-25 231.4 21.8 333 26-399 270-707 (1038)
60 3mwy_W Chromo domain-containin 99.8 2.5E-20 8.7E-25 222.1 20.1 108 276-403 572-686 (800)
61 1z3i_X Similar to RAD54-like; 99.8 4.8E-19 1.6E-23 206.1 29.6 119 260-401 403-528 (644)
62 3jux_A Protein translocase sub 99.8 1.5E-18 5E-23 195.9 25.6 105 277-402 475-588 (822)
63 1c4o_A DNA nucleotide excision 99.8 5.4E-18 1.8E-22 197.2 26.7 110 277-401 440-550 (664)
64 3iuy_A Probable ATP-dependent 99.8 2.1E-18 7.1E-23 174.4 19.2 153 27-182 42-211 (228)
65 3ber_A Probable ATP-dependent 99.8 2.3E-18 7.9E-23 176.6 17.9 154 27-182 65-230 (249)
66 1vec_A ATP-dependent RNA helic 99.8 5.3E-18 1.8E-22 168.3 19.4 155 27-182 25-190 (206)
67 3bor_A Human initiation factor 99.8 3E-18 1E-22 174.4 17.8 153 28-182 53-217 (237)
68 3ly5_A ATP-dependent RNA helic 99.8 2.4E-18 8.2E-23 177.9 16.1 153 28-182 77-245 (262)
69 1qde_A EIF4A, translation init 99.8 8.9E-18 3.1E-22 169.1 19.3 154 27-182 36-199 (224)
70 1q0u_A Bstdead; DEAD protein, 99.8 6.2E-18 2.1E-22 169.8 18.1 155 27-182 26-194 (219)
71 2gxq_A Heat resistant RNA depe 99.8 8.6E-18 3E-22 166.8 17.8 152 27-182 23-188 (207)
72 3fe2_A Probable ATP-dependent 99.8 5.7E-18 1.9E-22 172.9 16.7 153 28-182 52-220 (242)
73 2oxc_A Probable ATP-dependent 99.8 1.1E-17 3.8E-22 169.4 17.8 160 28-189 47-217 (230)
74 3fmo_B ATP-dependent RNA helic 99.8 1.7E-17 5.9E-22 174.9 19.2 155 27-182 114-280 (300)
75 2pl3_A Probable ATP-dependent 99.8 1.9E-17 6.6E-22 168.1 18.3 154 27-182 47-215 (236)
76 2rb4_A ATP-dependent RNA helic 99.8 4.1E-18 1.4E-22 165.0 12.6 114 276-403 34-149 (175)
77 2hjv_A ATP-dependent RNA helic 99.7 4E-18 1.4E-22 163.1 11.4 108 277-404 36-145 (163)
78 1fuk_A Eukaryotic initiation f 99.7 3.8E-18 1.3E-22 163.6 11.2 109 276-404 30-140 (165)
79 1t6n_A Probable ATP-dependent 99.7 2.6E-17 8.8E-22 165.3 17.7 154 28-182 37-203 (220)
80 3dkp_A Probable ATP-dependent 99.7 4.7E-17 1.6E-21 166.2 19.5 160 27-189 51-229 (245)
81 1wrb_A DJVLGB; RNA helicase, D 99.7 1.4E-16 4.7E-21 163.6 18.7 154 27-182 45-222 (253)
82 1t5i_A C_terminal domain of A 99.7 1E-17 3.5E-22 161.8 8.7 106 276-401 31-138 (172)
83 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.1E-17 3.7E-22 163.6 8.9 108 276-403 46-155 (185)
84 2d7d_A Uvrabc system protein B 99.7 2.4E-17 8.1E-22 191.7 13.1 110 277-401 446-556 (661)
85 2p6n_A ATP-dependent RNA helic 99.7 1.6E-17 5.6E-22 163.1 8.4 105 277-401 55-161 (191)
86 3b6e_A Interferon-induced heli 99.7 1.8E-16 6.1E-21 158.1 14.9 153 23-178 29-216 (216)
87 2yjt_D ATP-dependent RNA helic 99.5 4.3E-18 1.5E-22 164.1 0.0 110 276-405 30-141 (170)
88 2ipc_A Preprotein translocase 99.6 7.7E-14 2.6E-18 160.5 22.4 119 26-148 78-213 (997)
89 2vl7_A XPD; helicase, unknown 99.6 4.6E-15 1.6E-19 169.0 12.2 126 261-397 372-518 (540)
90 1rif_A DAR protein, DNA helica 99.5 2E-14 6.9E-19 150.0 12.8 155 26-190 112-275 (282)
91 2fz4_A DNA repair protein RAD2 99.5 1.7E-13 5.8E-18 139.2 14.1 141 24-181 90-230 (237)
92 3crv_A XPD/RAD3 related DNA he 99.4 3.9E-11 1.3E-15 137.0 27.5 127 258-397 378-528 (551)
93 1z5z_A Helicase of the SNF2/RA 99.3 6.5E-12 2.2E-16 129.9 9.5 107 277-402 113-225 (271)
94 4a15_A XPD helicase, ATP-depen 99.0 1.5E-08 5.2E-13 116.7 21.5 125 261-397 436-581 (620)
95 3upu_A ATP-dependent DNA helic 98.1 5.5E-06 1.9E-10 92.1 10.1 62 27-88 25-94 (459)
96 1w36_D RECD, exodeoxyribonucle 98.1 8.7E-06 3E-10 93.6 10.9 140 29-178 151-298 (608)
97 3e1s_A Exodeoxyribonuclease V, 97.8 3.7E-05 1.3E-09 87.5 8.5 63 25-87 187-251 (574)
98 4b3f_X DNA-binding protein smu 97.7 5.1E-05 1.7E-09 88.0 9.4 64 27-90 189-255 (646)
99 2b8t_A Thymidine kinase; deoxy 97.4 0.0011 3.7E-08 65.8 11.6 112 41-177 11-124 (223)
100 3te6_A Regulatory protein SIR3 97.1 0.0035 1.2E-07 65.5 12.4 44 137-181 132-175 (318)
101 2orw_A Thymidine kinase; TMTK, 97.1 0.001 3.6E-08 63.9 7.6 37 41-77 2-40 (184)
102 3lfu_A DNA helicase II; SF1 he 96.9 0.046 1.6E-06 62.9 21.0 66 27-94 9-80 (647)
103 3ec2_A DNA replication protein 96.8 0.0022 7.6E-08 61.0 7.7 35 29-63 16-59 (180)
104 1xx6_A Thymidine kinase; NESG, 96.8 0.0029 1E-07 61.1 8.1 37 41-77 7-45 (191)
105 2o0j_A Terminase, DNA packagin 96.7 0.018 6.2E-07 61.7 14.6 155 25-190 161-325 (385)
106 3n70_A Transport activator; si 96.5 0.0083 2.8E-07 54.9 9.2 30 31-60 13-42 (145)
107 2zpa_A Uncharacterized protein 96.5 0.0069 2.4E-07 69.1 10.3 113 27-180 175-289 (671)
108 2w58_A DNAI, primosome compone 96.5 0.0058 2E-07 59.2 8.5 21 43-63 55-75 (202)
109 3bos_A Putative DNA replicatio 96.5 0.0025 8.7E-08 63.1 5.9 22 41-62 51-72 (242)
110 2v1u_A Cell division control p 96.5 0.0076 2.6E-07 64.4 10.1 24 445-468 327-350 (387)
111 1njg_A DNA polymerase III subu 96.5 0.015 5E-07 57.2 11.2 34 31-64 31-67 (250)
112 2chg_A Replication factor C sm 96.4 0.0087 3E-07 58.1 9.1 33 30-62 24-58 (226)
113 1fnn_A CDC6P, cell division co 96.4 0.0073 2.5E-07 64.7 9.2 24 445-468 327-350 (389)
114 3co5_A Putative two-component 96.4 0.0067 2.3E-07 55.4 7.3 30 30-59 15-44 (143)
115 3cpe_A Terminase, DNA packagin 96.2 0.062 2.1E-06 61.2 16.0 154 25-189 161-324 (592)
116 2qby_A CDC6 homolog 1, cell di 96.2 0.014 4.7E-07 62.2 9.8 23 42-64 45-67 (386)
117 3vkw_A Replicase large subunit 96.2 0.0079 2.7E-07 65.4 7.8 108 43-178 162-269 (446)
118 2gk6_A Regulator of nonsense t 96.1 0.021 7.3E-07 65.5 11.5 64 27-90 180-246 (624)
119 2qen_A Walker-type ATPase; unk 96.1 0.099 3.4E-06 54.6 15.8 35 32-66 21-55 (350)
120 2qgz_A Helicase loader, putati 96.0 0.0094 3.2E-07 62.1 7.2 21 42-62 152-172 (308)
121 2orv_A Thymidine kinase; TP4A 95.9 0.025 8.4E-07 55.9 9.1 37 41-77 18-56 (234)
122 3kl4_A SRP54, signal recogniti 95.9 0.041 1.4E-06 59.9 11.6 128 43-189 98-235 (433)
123 3syl_A Protein CBBX; photosynt 95.8 0.046 1.6E-06 56.5 11.7 41 138-178 131-178 (309)
124 2j9r_A Thymidine kinase; TK1, 95.8 0.0086 2.9E-07 58.6 5.5 37 41-77 27-65 (214)
125 1jbk_A CLPB protein; beta barr 95.8 0.11 3.8E-06 48.6 13.5 33 31-63 30-64 (195)
126 1jr3_A DNA polymerase III subu 95.8 0.037 1.3E-06 58.7 11.1 32 33-64 26-60 (373)
127 2fna_A Conserved hypothetical 95.7 0.055 1.9E-06 56.8 11.7 33 40-72 28-60 (357)
128 2kjq_A DNAA-related protein; s 95.6 0.0035 1.2E-07 57.9 1.6 22 41-62 35-56 (149)
129 1l8q_A Chromosomal replication 95.6 0.047 1.6E-06 57.0 10.5 21 43-63 38-58 (324)
130 3dm5_A SRP54, signal recogniti 95.5 0.046 1.6E-06 59.5 10.2 129 43-190 101-237 (443)
131 1a5t_A Delta prime, HOLB; zinc 95.5 0.051 1.7E-06 57.2 10.4 40 136-177 107-146 (334)
132 2xzl_A ATP-dependent helicase 95.5 0.042 1.4E-06 64.8 10.6 64 27-90 360-426 (802)
133 3h4m_A Proteasome-activating n 95.5 0.055 1.9E-06 55.2 10.3 23 41-63 50-72 (285)
134 2qby_B CDC6 homolog 3, cell di 95.4 0.035 1.2E-06 59.2 9.0 24 445-468 315-338 (384)
135 1iqp_A RFCS; clamp loader, ext 95.3 0.073 2.5E-06 55.2 10.8 31 32-62 34-66 (327)
136 2wjy_A Regulator of nonsense t 95.3 0.067 2.3E-06 63.0 11.5 64 27-90 356-422 (800)
137 3pfi_A Holliday junction ATP-d 95.3 0.07 2.4E-06 55.9 10.7 33 450-484 293-326 (338)
138 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.084 2.9E-06 52.9 10.9 22 43-64 40-61 (262)
139 1hqc_A RUVB; extended AAA-ATPa 95.2 0.077 2.6E-06 55.1 10.6 20 43-62 39-58 (324)
140 1d2n_A N-ethylmaleimide-sensit 95.2 0.059 2E-06 54.7 9.5 23 43-65 65-87 (272)
141 2bjv_A PSP operon transcriptio 95.1 0.038 1.3E-06 55.8 7.7 25 39-63 26-50 (265)
142 2px0_A Flagellar biosynthesis 95.1 0.12 3.9E-06 53.5 11.3 124 42-189 105-234 (296)
143 1sxj_A Activator 1 95 kDa subu 94.9 0.1 3.5E-06 58.4 11.2 25 43-67 78-102 (516)
144 3u61_B DNA polymerase accessor 94.8 0.097 3.3E-06 54.5 10.0 29 34-62 37-68 (324)
145 3eie_A Vacuolar protein sortin 94.7 0.086 2.9E-06 55.0 9.4 24 43-66 52-75 (322)
146 3e2i_A Thymidine kinase; Zn-bi 94.7 0.036 1.2E-06 54.1 5.8 38 40-77 26-65 (219)
147 1w5s_A Origin recognition comp 94.7 0.035 1.2E-06 59.8 6.4 23 446-468 348-370 (412)
148 1vma_A Cell division protein F 94.6 0.14 4.9E-06 53.0 10.6 119 42-179 104-234 (306)
149 1w4r_A Thymidine kinase; type 94.6 0.035 1.2E-06 53.3 5.4 36 41-76 19-56 (195)
150 1sxj_C Activator 1 40 kDa subu 94.6 0.056 1.9E-06 56.9 7.5 30 34-63 36-67 (340)
151 1sxj_D Activator 1 41 kDa subu 94.5 0.053 1.8E-06 57.0 7.3 30 33-62 47-78 (353)
152 2z4s_A Chromosomal replication 94.5 0.18 6.1E-06 55.2 11.5 20 43-62 131-150 (440)
153 3b9p_A CG5977-PA, isoform A; A 94.5 0.14 4.8E-06 52.5 10.2 22 42-63 54-75 (297)
154 1sxj_E Activator 1 40 kDa subu 94.3 0.16 5.3E-06 53.5 10.2 41 137-179 134-174 (354)
155 1sxj_B Activator 1 37 kDa subu 94.2 0.13 4.3E-06 53.2 9.1 31 32-62 30-62 (323)
156 3vfd_A Spastin; ATPase, microt 94.1 0.17 5.9E-06 54.2 10.2 21 42-62 148-168 (389)
157 4b4t_J 26S protease regulatory 94.1 0.1 3.6E-06 55.9 8.2 17 43-59 183-199 (405)
158 1lv7_A FTSH; alpha/beta domain 93.9 0.33 1.1E-05 48.5 11.2 22 42-63 45-66 (257)
159 3d8b_A Fidgetin-like protein 1 93.8 0.16 5.4E-06 53.9 9.2 24 42-65 117-140 (357)
160 3pxi_A Negative regulator of g 93.8 0.22 7.6E-06 58.4 11.3 16 44-59 523-538 (758)
161 1ojl_A Transcriptional regulat 93.8 0.088 3E-06 54.6 7.0 24 40-63 23-46 (304)
162 2gno_A DNA polymerase III, gam 93.8 0.23 7.8E-06 51.4 10.0 39 136-176 81-119 (305)
163 3cf0_A Transitional endoplasmi 93.8 0.25 8.6E-06 50.9 10.4 26 42-67 49-74 (301)
164 2qp9_X Vacuolar protein sortin 93.7 0.11 3.9E-06 55.0 7.7 25 43-67 85-109 (355)
165 2chq_A Replication factor C sm 93.7 0.074 2.5E-06 54.9 6.1 19 44-62 40-58 (319)
166 1xwi_A SKD1 protein; VPS4B, AA 93.5 0.18 6.1E-06 52.7 8.7 24 43-66 46-69 (322)
167 3pvs_A Replication-associated 93.4 0.084 2.9E-06 57.9 6.3 28 35-62 41-70 (447)
168 3hgt_A HDA1 complex subunit 3; 93.3 0.36 1.2E-05 50.0 10.3 120 258-402 111-238 (328)
169 3t15_A Ribulose bisphosphate c 93.2 0.3 1E-05 50.2 9.8 25 43-67 37-61 (293)
170 4b4t_H 26S protease regulatory 93.2 0.13 4.6E-06 55.9 7.2 17 43-59 244-260 (467)
171 2ce7_A Cell division protein F 93.1 0.18 6.2E-06 55.6 8.2 23 43-65 50-72 (476)
172 4fcw_A Chaperone protein CLPB; 92.8 0.22 7.5E-06 51.3 8.1 20 43-62 48-67 (311)
173 4b4t_M 26S protease regulatory 92.7 0.17 5.9E-06 54.9 7.2 18 43-60 216-233 (434)
174 3b85_A Phosphate starvation-in 92.6 0.093 3.2E-06 51.2 4.5 35 29-63 9-43 (208)
175 3u4q_A ATP-dependent helicase/ 92.4 0.036 1.2E-06 68.8 1.6 129 24-155 7-145 (1232)
176 3k1j_A LON protease, ATP-depen 92.4 0.64 2.2E-05 52.9 11.9 34 31-64 49-82 (604)
177 3hu3_A Transitional endoplasmi 92.3 0.26 8.8E-06 54.6 8.2 24 42-65 238-261 (489)
178 2zan_A Vacuolar protein sortin 92.3 0.66 2.3E-05 50.6 11.4 24 43-66 168-191 (444)
179 4b4t_L 26S protease subunit RP 92.0 0.27 9.3E-06 53.4 7.7 19 43-61 216-234 (437)
180 4b4t_I 26S protease regulatory 91.9 0.37 1.3E-05 51.9 8.5 17 43-59 217-233 (437)
181 4b4t_K 26S protease regulatory 91.8 0.37 1.2E-05 52.3 8.5 19 43-61 207-225 (428)
182 1kgd_A CASK, peripheral plasma 91.7 0.096 3.3E-06 49.6 3.3 24 41-64 4-27 (180)
183 2yhs_A FTSY, cell division pro 91.5 0.68 2.3E-05 50.9 10.3 32 42-73 293-326 (503)
184 3e70_C DPA, signal recognition 91.5 0.31 1.1E-05 51.0 7.3 122 41-180 128-254 (328)
185 2gza_A Type IV secretion syste 91.4 0.11 3.7E-06 55.3 3.7 27 38-64 171-197 (361)
186 2eyu_A Twitching motility prot 91.0 0.079 2.7E-06 53.6 2.1 25 39-63 22-46 (261)
187 1lvg_A Guanylate kinase, GMP k 90.7 0.13 4.3E-06 49.6 3.2 23 41-63 3-25 (198)
188 1r6b_X CLPA protein; AAA+, N-t 90.7 0.13 4.4E-06 60.5 3.8 19 44-62 490-508 (758)
189 3cf2_A TER ATPase, transitiona 90.6 0.32 1.1E-05 57.0 6.9 21 43-63 239-259 (806)
190 2oap_1 GSPE-2, type II secreti 90.5 0.19 6.4E-06 56.0 4.7 26 38-63 256-281 (511)
191 1p9r_A General secretion pathw 90.5 0.19 6.4E-06 54.5 4.5 39 26-64 149-189 (418)
192 3tr0_A Guanylate kinase, GMP k 90.3 0.13 4.5E-06 49.3 2.9 24 40-63 5-28 (205)
193 3tau_A Guanylate kinase, GMP k 90.1 0.16 5.5E-06 49.3 3.3 23 41-63 7-29 (208)
194 2pt7_A CAG-ALFA; ATPase, prote 90.0 0.14 4.7E-06 53.8 3.0 26 38-63 167-192 (330)
195 1z6g_A Guanylate kinase; struc 89.9 0.17 5.7E-06 49.6 3.3 25 39-63 20-44 (218)
196 3ney_A 55 kDa erythrocyte memb 89.6 0.19 6.4E-06 48.5 3.3 24 41-64 18-41 (197)
197 1uaa_A REP helicase, protein ( 89.6 0.31 1.1E-05 56.3 5.8 64 28-93 3-72 (673)
198 3a00_A Guanylate kinase, GMP k 89.4 0.19 6.6E-06 47.7 3.2 22 42-63 1-22 (186)
199 1znw_A Guanylate kinase, GMP k 89.2 0.2 6.9E-06 48.4 3.3 26 38-63 16-41 (207)
200 1zp6_A Hypothetical protein AT 89.2 0.16 5.6E-06 48.1 2.5 25 39-63 6-30 (191)
201 2j41_A Guanylate kinase; GMP, 89.1 0.18 6.3E-06 48.3 2.9 24 39-62 3-26 (207)
202 4gp7_A Metallophosphoesterase; 89.1 0.15 5E-06 47.9 2.1 23 40-62 7-29 (171)
203 3jvv_A Twitching mobility prot 88.7 0.18 6.2E-06 53.4 2.7 24 40-63 121-144 (356)
204 1qvr_A CLPB protein; coiled co 88.6 0.6 2E-05 55.6 7.4 18 44-61 590-607 (854)
205 1pjr_A PCRA; DNA repair, DNA r 88.6 0.5 1.7E-05 55.1 6.6 64 28-93 12-81 (724)
206 3vaa_A Shikimate kinase, SK; s 88.3 0.32 1.1E-05 46.6 4.0 29 39-67 22-50 (199)
207 2ewv_A Twitching motility prot 88.3 0.16 5.6E-06 54.1 2.0 25 39-63 133-157 (372)
208 2p65_A Hypothetical protein PF 88.2 0.31 1.1E-05 45.4 3.8 31 33-63 32-64 (187)
209 1qvr_A CLPB protein; coiled co 88.0 1.3 4.6E-05 52.5 9.9 30 33-62 180-211 (854)
210 2ffh_A Protein (FFH); SRP54, s 87.4 2.6 8.9E-05 45.5 10.8 119 43-179 99-222 (425)
211 1s96_A Guanylate kinase, GMP k 87.4 0.32 1.1E-05 47.7 3.3 26 39-64 13-38 (219)
212 2qor_A Guanylate kinase; phosp 87.3 0.32 1.1E-05 46.8 3.3 23 40-62 10-32 (204)
213 2dhr_A FTSH; AAA+ protein, hex 87.3 1.8 6E-05 47.9 9.6 21 43-63 65-85 (499)
214 1ls1_A Signal recognition part 87.3 2.1 7.1E-05 43.9 9.6 122 42-180 98-223 (295)
215 1ex7_A Guanylate kinase; subst 86.9 0.42 1.4E-05 45.6 3.8 23 43-65 2-24 (186)
216 3umf_A Adenylate kinase; rossm 86.9 0.27 9.2E-06 48.2 2.5 28 40-67 27-54 (217)
217 3exa_A TRNA delta(2)-isopenten 86.8 0.32 1.1E-05 50.2 3.1 20 42-61 3-22 (322)
218 2ehv_A Hypothetical protein PH 86.7 0.36 1.2E-05 47.7 3.3 26 38-63 26-51 (251)
219 3trf_A Shikimate kinase, SK; a 86.5 0.48 1.6E-05 44.5 4.0 23 42-64 5-27 (185)
220 3a8t_A Adenylate isopentenyltr 86.5 0.31 1.1E-05 51.0 2.8 19 41-59 39-57 (339)
221 1ixz_A ATP-dependent metallopr 86.5 1.2 4.1E-05 44.2 7.1 25 43-67 50-74 (254)
222 3tif_A Uncharacterized ABC tra 86.2 0.22 7.5E-06 49.4 1.5 23 40-62 29-51 (235)
223 3lw7_A Adenylate kinase relate 86.0 0.37 1.3E-05 44.5 2.8 19 44-62 3-21 (179)
224 2qmh_A HPR kinase/phosphorylas 86.0 0.34 1.2E-05 46.6 2.6 22 42-63 34-55 (205)
225 3m6a_A ATP-dependent protease 85.9 0.53 1.8E-05 52.8 4.6 21 42-62 108-128 (543)
226 3lnc_A Guanylate kinase, GMP k 85.9 0.29 1E-05 48.1 2.2 24 40-63 25-48 (231)
227 1kht_A Adenylate kinase; phosp 85.9 0.41 1.4E-05 45.1 3.1 22 42-63 3-24 (192)
228 2cvh_A DNA repair and recombin 85.7 0.55 1.9E-05 45.3 4.0 36 39-74 17-52 (220)
229 1kag_A SKI, shikimate kinase I 85.4 0.45 1.5E-05 44.1 3.1 22 42-63 4-25 (173)
230 2ze6_A Isopentenyl transferase 85.4 0.51 1.8E-05 47.3 3.7 22 44-65 3-24 (253)
231 4eun_A Thermoresistant glucoki 85.4 0.47 1.6E-05 45.5 3.3 23 41-63 28-50 (200)
232 3c8u_A Fructokinase; YP_612366 85.3 0.36 1.2E-05 46.6 2.5 21 41-61 21-41 (208)
233 1ypw_A Transitional endoplasmi 85.2 0.72 2.5E-05 54.4 5.4 22 42-63 238-259 (806)
234 1nij_A Hypothetical protein YJ 85.2 0.49 1.7E-05 49.2 3.6 34 43-76 5-38 (318)
235 2cbz_A Multidrug resistance-as 85.0 0.27 9.4E-06 48.8 1.5 23 40-62 29-51 (237)
236 4a74_A DNA repair and recombin 85.0 0.4 1.4E-05 46.6 2.7 25 40-64 23-47 (231)
237 1g5t_A COB(I)alamin adenosyltr 84.9 0.78 2.7E-05 44.0 4.5 34 41-75 27-63 (196)
238 2dr3_A UPF0273 protein PH0284; 84.8 0.54 1.8E-05 46.3 3.6 26 40-65 21-46 (247)
239 1htw_A HI0065; nucleotide-bind 84.8 0.65 2.2E-05 42.9 3.8 23 40-62 31-53 (158)
240 3sr0_A Adenylate kinase; phosp 84.8 0.5 1.7E-05 45.8 3.2 24 44-67 2-25 (206)
241 3foz_A TRNA delta(2)-isopenten 84.8 0.49 1.7E-05 48.8 3.2 19 43-61 11-29 (316)
242 3cf2_A TER ATPase, transitiona 84.7 1.6 5.3E-05 51.2 7.8 24 43-66 512-535 (806)
243 1zd8_A GTP:AMP phosphotransfer 84.7 0.57 1.9E-05 45.8 3.6 27 41-67 6-32 (227)
244 1gvn_B Zeta; postsegregational 84.6 1.1 3.9E-05 45.7 5.9 24 43-66 34-57 (287)
245 2v3c_C SRP54, signal recogniti 84.6 0.39 1.3E-05 52.2 2.5 21 43-63 100-120 (432)
246 1qhx_A CPT, protein (chloramph 84.5 0.85 2.9E-05 42.4 4.6 23 42-64 3-25 (178)
247 2v9p_A Replication protein E1; 84.5 0.4 1.4E-05 49.5 2.4 32 40-72 124-155 (305)
248 2pcj_A ABC transporter, lipopr 84.5 0.3 1E-05 48.1 1.4 23 40-62 28-50 (224)
249 3iij_A Coilin-interacting nucl 84.4 0.53 1.8E-05 44.1 3.1 25 41-65 10-34 (180)
250 2w0m_A SSO2452; RECA, SSPF, un 84.4 0.53 1.8E-05 45.7 3.3 25 39-63 20-44 (235)
251 1sgw_A Putative ABC transporte 84.4 0.31 1.1E-05 47.6 1.5 23 40-62 33-55 (214)
252 1j8m_F SRP54, signal recogniti 84.3 2.4 8.2E-05 43.4 8.3 119 43-179 99-224 (297)
253 1ofh_A ATP-dependent HSL prote 84.2 1.4 4.9E-05 44.8 6.6 22 42-63 50-71 (310)
254 2h57_A ADP-ribosylation factor 84.2 0.39 1.3E-05 45.3 2.1 21 43-63 22-42 (190)
255 3kb2_A SPBC2 prophage-derived 84.2 0.51 1.7E-05 43.5 2.9 20 44-63 3-22 (173)
256 2c95_A Adenylate kinase 1; tra 84.2 0.6 2.1E-05 44.1 3.5 29 39-67 6-34 (196)
257 2zts_A Putative uncharacterize 83.9 0.63 2.1E-05 45.8 3.6 25 41-65 29-53 (251)
258 2bwj_A Adenylate kinase 5; pho 83.9 0.75 2.6E-05 43.6 4.0 30 38-67 8-37 (199)
259 3cmu_A Protein RECA, recombina 83.9 1.5 5E-05 56.2 7.5 26 41-66 1426-1451(2050)
260 2pze_A Cystic fibrosis transme 83.8 0.33 1.1E-05 47.9 1.5 23 40-62 32-54 (229)
261 1ye8_A Protein THEP1, hypothet 83.8 0.6 2E-05 44.1 3.2 20 44-63 2-21 (178)
262 3cm0_A Adenylate kinase; ATP-b 83.7 0.43 1.5E-05 44.9 2.1 26 41-66 3-28 (186)
263 1ly1_A Polynucleotide kinase; 83.7 0.54 1.9E-05 43.7 2.8 22 43-64 3-24 (181)
264 1knq_A Gluconate kinase; ALFA/ 83.6 0.5 1.7E-05 44.0 2.5 22 42-63 8-29 (175)
265 2bdt_A BH3686; alpha-beta prot 83.5 0.45 1.6E-05 44.9 2.2 21 43-63 3-23 (189)
266 3asz_A Uridine kinase; cytidin 83.4 0.53 1.8E-05 45.3 2.7 22 41-62 5-26 (211)
267 2i3b_A HCR-ntpase, human cance 83.4 0.65 2.2E-05 44.3 3.3 21 42-62 1-21 (189)
268 3gfo_A Cobalt import ATP-bindi 83.3 0.41 1.4E-05 48.7 1.9 23 40-62 32-54 (275)
269 1zu4_A FTSY; GTPase, signal re 83.3 5.6 0.00019 41.1 10.7 20 43-62 106-125 (320)
270 1b0u_A Histidine permease; ABC 83.2 0.37 1.3E-05 48.7 1.5 23 40-62 30-52 (262)
271 2f1r_A Molybdopterin-guanine d 83.2 0.44 1.5E-05 44.7 2.0 21 43-63 3-23 (171)
272 2r44_A Uncharacterized protein 83.1 1.4 4.8E-05 45.7 6.1 34 31-64 35-68 (331)
273 3nh6_A ATP-binding cassette SU 83.1 0.33 1.1E-05 50.2 1.2 23 40-62 78-100 (306)
274 1mv5_A LMRA, multidrug resista 83.0 0.33 1.1E-05 48.4 1.0 23 40-62 26-48 (243)
275 3tlx_A Adenylate kinase 2; str 82.8 0.71 2.4E-05 45.8 3.4 26 42-67 29-54 (243)
276 1n0w_A DNA repair protein RAD5 82.7 0.68 2.3E-05 45.4 3.3 26 40-65 22-47 (243)
277 2v54_A DTMP kinase, thymidylat 82.7 0.68 2.3E-05 44.1 3.2 36 41-76 3-39 (204)
278 2h17_A ADP-ribosylation factor 82.7 0.52 1.8E-05 44.0 2.3 23 43-65 22-44 (181)
279 1vpl_A ABC transporter, ATP-bi 82.6 0.4 1.4E-05 48.2 1.5 23 40-62 39-61 (256)
280 2olj_A Amino acid ABC transpor 82.6 0.4 1.4E-05 48.4 1.5 23 40-62 48-70 (263)
281 1g6h_A High-affinity branched- 82.5 0.56 1.9E-05 47.1 2.6 23 40-62 31-53 (257)
282 1cr0_A DNA primase/helicase; R 82.5 0.5 1.7E-05 48.3 2.2 27 38-64 31-57 (296)
283 2ff7_A Alpha-hemolysin translo 82.4 0.47 1.6E-05 47.4 1.9 23 40-62 33-55 (247)
284 3fb4_A Adenylate kinase; psych 82.4 0.82 2.8E-05 44.1 3.7 24 44-67 2-25 (216)
285 3uie_A Adenylyl-sulfate kinase 82.4 0.59 2E-05 44.7 2.6 23 40-62 23-45 (200)
286 2j37_W Signal recognition part 82.4 6.6 0.00023 43.3 11.3 118 44-179 103-225 (504)
287 2rhm_A Putative kinase; P-loop 82.3 0.6 2E-05 44.0 2.6 26 42-67 5-30 (193)
288 1y63_A LMAJ004144AAA protein; 82.3 0.71 2.4E-05 43.5 3.1 23 41-63 9-31 (184)
289 1ji0_A ABC transporter; ATP bi 82.3 0.59 2E-05 46.4 2.6 23 40-62 30-52 (240)
290 3dl0_A Adenylate kinase; phosp 82.2 0.89 3E-05 43.9 3.8 24 44-67 2-25 (216)
291 3t61_A Gluconokinase; PSI-biol 82.2 0.67 2.3E-05 44.3 2.9 21 43-63 19-39 (202)
292 2ghi_A Transport protein; mult 82.0 0.51 1.7E-05 47.6 2.0 23 40-62 44-66 (260)
293 2ixe_A Antigen peptide transpo 81.9 0.43 1.5E-05 48.4 1.5 23 40-62 43-65 (271)
294 2zu0_C Probable ATP-dependent 81.9 0.55 1.9E-05 47.5 2.2 23 40-62 44-66 (267)
295 1zuh_A Shikimate kinase; alpha 81.9 0.98 3.4E-05 41.6 3.9 25 43-67 8-32 (168)
296 2ihy_A ABC transporter, ATP-bi 81.8 0.44 1.5E-05 48.6 1.5 23 40-62 45-67 (279)
297 2yz2_A Putative ABC transporte 81.8 0.44 1.5E-05 48.2 1.5 23 40-62 31-53 (266)
298 4g1u_C Hemin import ATP-bindin 81.8 0.51 1.8E-05 47.7 2.0 23 40-62 35-57 (266)
299 2d2e_A SUFC protein; ABC-ATPas 81.8 0.54 1.8E-05 47.0 2.1 24 40-63 27-50 (250)
300 1nlf_A Regulatory protein REPA 81.7 0.75 2.6E-05 46.6 3.2 26 39-64 27-52 (279)
301 1tev_A UMP-CMP kinase; ploop, 81.7 0.66 2.3E-05 43.7 2.6 24 42-65 3-26 (196)
302 3b9q_A Chloroplast SRP recepto 81.7 0.67 2.3E-05 47.8 2.8 22 42-63 100-121 (302)
303 3crm_A TRNA delta(2)-isopenten 81.6 0.83 2.8E-05 47.5 3.5 17 43-59 6-22 (323)
304 3hws_A ATP-dependent CLP prote 81.5 2.1 7.2E-05 45.1 6.7 23 41-63 50-72 (363)
305 2z0h_A DTMP kinase, thymidylat 81.5 1.2 4E-05 42.1 4.3 20 44-63 2-21 (197)
306 3d3q_A TRNA delta(2)-isopenten 81.5 0.82 2.8E-05 47.8 3.4 17 43-59 8-24 (340)
307 1rj9_A FTSY, signal recognitio 81.4 0.77 2.6E-05 47.4 3.2 23 41-63 101-123 (304)
308 1e9r_A Conjugal transfer prote 81.2 0.93 3.2E-05 49.2 4.0 40 41-80 52-93 (437)
309 3kta_A Chromosome segregation 81.2 0.84 2.9E-05 42.7 3.1 21 43-63 27-47 (182)
310 1cke_A CK, MSSA, protein (cyti 81.2 0.8 2.7E-05 44.5 3.1 23 42-64 5-27 (227)
311 1rz3_A Hypothetical protein rb 81.1 1.1 3.9E-05 42.8 4.1 30 33-62 8-42 (201)
312 1xjc_A MOBB protein homolog; s 81.0 0.9 3.1E-05 42.5 3.2 22 43-64 5-26 (169)
313 2bbw_A Adenylate kinase 4, AK4 81.0 0.87 3E-05 45.1 3.3 27 41-67 26-52 (246)
314 2qi9_C Vitamin B12 import ATP- 80.9 0.72 2.4E-05 46.1 2.6 23 40-62 24-46 (249)
315 2nq2_C Hypothetical ABC transp 80.7 0.72 2.5E-05 46.2 2.6 23 40-62 29-51 (253)
316 1nks_A Adenylate kinase; therm 80.4 0.83 2.8E-05 42.9 2.8 20 44-63 3-22 (194)
317 2jaq_A Deoxyguanosine kinase; 80.3 0.83 2.8E-05 43.4 2.8 21 44-64 2-22 (205)
318 2qt1_A Nicotinamide riboside k 80.3 0.76 2.6E-05 44.1 2.6 23 40-62 19-41 (207)
319 4ag6_A VIRB4 ATPase, type IV s 80.3 1.1 3.8E-05 47.8 4.1 37 41-77 34-72 (392)
320 2pez_A Bifunctional 3'-phospho 80.3 0.8 2.7E-05 42.8 2.7 22 41-62 4-25 (179)
321 1f2t_A RAD50 ABC-ATPase; DNA d 80.2 0.99 3.4E-05 41.1 3.2 20 43-62 24-43 (149)
322 2plr_A DTMP kinase, probable t 80.2 0.8 2.7E-05 43.8 2.7 24 41-64 3-26 (213)
323 1np6_A Molybdopterin-guanine d 80.0 1 3.4E-05 42.4 3.1 22 43-64 7-28 (174)
324 1e4v_A Adenylate kinase; trans 79.8 1.1 3.9E-05 43.2 3.7 24 44-67 2-25 (214)
325 2vp4_A Deoxynucleoside kinase; 79.8 0.69 2.3E-05 45.5 2.1 22 41-62 19-40 (230)
326 1g8p_A Magnesium-chelatase 38 79.8 1.1 3.9E-05 46.6 3.9 23 41-63 44-66 (350)
327 3nbx_X ATPase RAVA; AAA+ ATPas 79.8 1.3 4.3E-05 49.1 4.4 32 31-62 30-61 (500)
328 3tqc_A Pantothenate kinase; bi 79.8 1.4 4.9E-05 45.7 4.5 19 44-62 94-112 (321)
329 2cdn_A Adenylate kinase; phosp 79.7 1.3 4.5E-05 42.1 4.0 25 43-67 21-45 (201)
330 1aky_A Adenylate kinase; ATP:A 79.5 1 3.4E-05 43.7 3.2 26 42-67 4-29 (220)
331 1e6c_A Shikimate kinase; phosp 79.4 1 3.4E-05 41.6 3.0 21 43-63 3-23 (173)
332 2bbs_A Cystic fibrosis transme 79.4 0.59 2E-05 47.9 1.4 22 41-62 63-84 (290)
333 2yvu_A Probable adenylyl-sulfa 79.4 0.89 3E-05 42.8 2.7 22 41-62 12-33 (186)
334 2wwf_A Thymidilate kinase, put 79.4 0.99 3.4E-05 43.2 3.0 23 41-63 9-31 (212)
335 1m7g_A Adenylylsulfate kinase; 79.3 0.98 3.3E-05 43.6 3.0 24 39-62 22-45 (211)
336 1in4_A RUVB, holliday junction 79.3 1.4 4.8E-05 46.0 4.4 20 43-62 52-71 (334)
337 1zak_A Adenylate kinase; ATP:A 79.2 1 3.5E-05 43.8 3.1 26 42-67 5-30 (222)
338 1gm5_A RECG; helicase, replica 79.1 1.8 6.3E-05 50.6 5.7 74 277-350 418-495 (780)
339 1gtv_A TMK, thymidylate kinase 78.8 0.6 2E-05 44.9 1.2 20 44-63 2-21 (214)
340 2vli_A Antibiotic resistance p 78.7 1.3 4.3E-05 41.4 3.5 26 42-67 5-30 (183)
341 1qf9_A UMP/CMP kinase, protein 78.6 1 3.4E-05 42.3 2.8 25 43-67 7-31 (194)
342 3eph_A TRNA isopentenyltransfe 78.6 1 3.4E-05 48.3 2.9 18 43-60 3-20 (409)
343 1nn5_A Similar to deoxythymidy 78.5 1.1 3.8E-05 42.9 3.1 23 41-63 8-30 (215)
344 1ukz_A Uridylate kinase; trans 78.5 1.3 4.4E-05 42.2 3.5 25 43-67 16-40 (203)
345 2xxa_A Signal recognition part 78.4 6.2 0.00021 42.7 9.3 118 43-178 101-224 (433)
346 2og2_A Putative signal recogni 78.1 0.99 3.4E-05 47.7 2.7 22 42-63 157-178 (359)
347 2iyv_A Shikimate kinase, SK; t 78.1 1.6 5.4E-05 40.8 4.0 25 43-67 3-27 (184)
348 3nwj_A ATSK2; P loop, shikimat 78.1 1.3 4.3E-05 44.3 3.4 22 42-63 48-69 (250)
349 3fvq_A Fe(3+) IONS import ATP- 77.8 0.85 2.9E-05 48.2 2.1 24 40-63 28-51 (359)
350 3aez_A Pantothenate kinase; tr 77.6 1.1 3.7E-05 46.5 2.8 22 41-62 89-110 (312)
351 1iy2_A ATP-dependent metallopr 77.4 1.8 6.1E-05 43.7 4.4 24 43-66 74-97 (278)
352 3be4_A Adenylate kinase; malar 77.3 1.5 5.1E-05 42.5 3.6 26 42-67 5-30 (217)
353 2pjz_A Hypothetical protein ST 77.3 1 3.6E-05 45.3 2.5 21 42-62 30-50 (263)
354 4eaq_A DTMP kinase, thymidylat 77.3 1.1 3.7E-05 44.1 2.6 23 41-63 25-47 (229)
355 2pt5_A Shikimate kinase, SK; a 77.2 1.2 4.1E-05 40.9 2.8 24 44-67 2-25 (168)
356 2jeo_A Uridine-cytidine kinase 77.2 1 3.4E-05 44.7 2.4 24 39-62 22-45 (245)
357 1ak2_A Adenylate kinase isoenz 77.1 1.3 4.4E-05 43.5 3.2 26 42-67 16-41 (233)
358 4e22_A Cytidylate kinase; P-lo 77.1 1.3 4.4E-05 44.2 3.1 27 41-67 26-52 (252)
359 1zd9_A ADP-ribosylation factor 77.0 1.2 3.9E-05 41.9 2.6 22 43-64 23-44 (188)
360 3bh0_A DNAB-like replicative h 77.0 1.1 3.6E-05 46.5 2.6 27 39-65 65-91 (315)
361 1via_A Shikimate kinase; struc 77.0 1.3 4.5E-05 41.1 3.0 21 43-63 5-25 (175)
362 3a4m_A L-seryl-tRNA(SEC) kinas 77.0 1.8 6.1E-05 43.3 4.2 22 42-63 4-25 (260)
363 3rlf_A Maltose/maltodextrin im 76.9 0.96 3.3E-05 48.2 2.2 24 40-63 27-50 (381)
364 2onk_A Molybdate/tungstate ABC 76.9 0.93 3.2E-05 45.0 2.0 21 43-63 25-45 (240)
365 2pbr_A DTMP kinase, thymidylat 76.9 1.2 4.1E-05 41.8 2.8 20 44-63 2-21 (195)
366 2xb4_A Adenylate kinase; ATP-b 76.7 1.2 4.2E-05 43.4 2.8 24 44-67 2-25 (223)
367 2r62_A Cell division protease 76.7 1 3.5E-05 45.1 2.3 23 42-64 44-66 (268)
368 2p5t_B PEZT; postsegregational 76.6 1.4 4.8E-05 43.9 3.3 23 43-65 33-55 (253)
369 1z47_A CYSA, putative ABC-tran 76.3 0.98 3.3E-05 47.6 2.1 24 40-63 39-62 (355)
370 2x8a_A Nuclear valosin-contain 76.3 1.7 5.7E-05 44.0 3.8 21 43-63 45-65 (274)
371 2l8b_A Protein TRAI, DNA helic 76.1 5.9 0.0002 37.3 7.1 63 24-86 31-98 (189)
372 3gd7_A Fusion complex of cysti 76.1 1 3.5E-05 48.2 2.1 25 39-63 44-68 (390)
373 1odf_A YGR205W, hypothetical 3 76.0 2.3 7.7E-05 43.5 4.7 19 43-61 32-50 (290)
374 2if2_A Dephospho-COA kinase; a 76.0 1.4 4.8E-05 42.0 3.0 19 44-62 3-21 (204)
375 2z43_A DNA repair and recombin 75.8 1.9 6.6E-05 44.7 4.2 26 41-66 106-131 (324)
376 2yyz_A Sugar ABC transporter, 75.7 1.1 3.6E-05 47.5 2.2 24 40-63 27-50 (359)
377 3qf7_A RAD50; ABC-ATPase, ATPa 75.6 1.4 4.8E-05 46.6 3.2 19 44-62 25-43 (365)
378 3uk6_A RUVB-like 2; hexameric 75.5 2.4 8.1E-05 44.5 4.9 25 43-67 71-95 (368)
379 2vhj_A Ntpase P4, P4; non- hyd 75.5 1.2 4E-05 46.3 2.3 26 40-65 121-146 (331)
380 2it1_A 362AA long hypothetical 75.4 1.1 3.8E-05 47.4 2.2 24 40-63 27-50 (362)
381 2a5j_A RAS-related protein RAB 75.3 2.1 7.1E-05 40.1 3.9 22 44-65 23-44 (191)
382 3tmk_A Thymidylate kinase; pho 75.2 2.6 8.9E-05 41.0 4.7 25 41-65 4-28 (216)
383 1jjv_A Dephospho-COA kinase; P 75.2 1.4 4.8E-05 42.1 2.8 19 44-62 4-22 (206)
384 3d31_A Sulfate/molybdate ABC t 75.2 1 3.4E-05 47.4 1.8 24 40-63 24-47 (348)
385 1pui_A ENGB, probable GTP-bind 74.5 1.2 4.1E-05 42.4 2.1 23 40-62 24-46 (210)
386 1v43_A Sugar-binding transport 74.4 1.2 4.1E-05 47.3 2.2 24 40-63 35-58 (372)
387 3tui_C Methionine import ATP-b 74.4 1.2 4.2E-05 47.0 2.2 24 40-63 52-75 (366)
388 2gf9_A RAS-related protein RAB 74.3 1.9 6.4E-05 40.3 3.3 21 44-64 24-44 (189)
389 2d7d_A Uvrabc system protein B 74.3 4.8 0.00017 46.1 7.4 69 24-93 9-82 (661)
390 1uf9_A TT1252 protein; P-loop, 73.8 1.6 5.5E-05 41.3 2.8 21 43-63 9-29 (203)
391 1tf7_A KAIC; homohexamer, hexa 73.7 1.8 6.1E-05 48.3 3.5 26 38-63 35-60 (525)
392 2ius_A DNA translocase FTSK; n 73.6 1.8 6E-05 48.0 3.3 23 41-63 166-188 (512)
393 3lda_A DNA repair protein RAD5 73.5 1.3 4.6E-05 47.5 2.3 25 41-65 177-201 (400)
394 1c9k_A COBU, adenosylcobinamid 73.4 2.4 8.2E-05 40.0 3.8 30 45-76 2-31 (180)
395 1pzn_A RAD51, DNA repair and r 73.4 1.5 5.2E-05 46.1 2.7 26 41-66 130-155 (349)
396 1tq4_A IIGP1, interferon-induc 73.3 2.8 9.5E-05 45.1 4.7 20 44-63 71-90 (413)
397 2oil_A CATX-8, RAS-related pro 73.3 1.5 5.2E-05 41.1 2.4 21 44-64 27-47 (193)
398 1um8_A ATP-dependent CLP prote 73.2 2.8 9.5E-05 44.3 4.7 22 42-63 72-93 (376)
399 4edh_A DTMP kinase, thymidylat 73.2 2.8 9.5E-05 40.7 4.3 23 40-62 4-26 (213)
400 1vht_A Dephospho-COA kinase; s 73.1 1.7 5.9E-05 41.9 2.8 20 43-62 5-24 (218)
401 3oiy_A Reverse gyrase helicase 73.1 2.5 8.5E-05 45.2 4.4 75 276-350 64-144 (414)
402 1g29_1 MALK, maltose transport 73.1 1.9 6.4E-05 45.8 3.3 24 40-63 27-50 (372)
403 2zr9_A Protein RECA, recombina 73.1 2 6.8E-05 45.2 3.5 25 41-65 60-84 (349)
404 1sq5_A Pantothenate kinase; P- 73.0 1.7 5.7E-05 44.9 2.8 23 41-63 79-101 (308)
405 3auy_A DNA double-strand break 72.9 1.8 6.2E-05 45.9 3.1 21 43-63 26-46 (371)
406 4tmk_A Protein (thymidylate ki 72.8 2.1 7.1E-05 41.6 3.3 22 41-62 2-23 (213)
407 1v5w_A DMC1, meiotic recombina 72.8 2.3 7.8E-05 44.6 3.9 25 41-65 121-145 (343)
408 4a82_A Cystic fibrosis transme 72.7 1.1 3.8E-05 50.7 1.5 22 40-61 365-386 (578)
409 1oxx_K GLCV, glucose, ABC tran 72.6 1 3.4E-05 47.5 1.0 24 40-63 29-52 (353)
410 2dyk_A GTP-binding protein; GT 72.5 2 7E-05 38.5 3.0 22 44-65 3-24 (161)
411 3sop_A Neuronal-specific septi 72.4 1.8 6.2E-05 43.7 2.9 20 44-63 4-23 (270)
412 3qks_A DNA double-strand break 72.3 2.1 7.1E-05 41.1 3.2 20 43-62 24-43 (203)
413 2npi_A Protein CLP1; CLP1-PCF1 72.0 1.6 5.6E-05 47.7 2.6 24 39-62 135-158 (460)
414 3b5x_A Lipid A export ATP-bind 71.8 1.6 5.3E-05 49.5 2.4 24 40-63 367-390 (582)
415 2ce2_X GTPase HRAS; signaling 71.7 2.1 7.3E-05 38.4 2.9 21 44-64 5-25 (166)
416 1svm_A Large T antigen; AAA+ f 71.4 1.7 6E-05 46.1 2.5 23 41-63 168-190 (377)
417 3hr8_A Protein RECA; alpha and 71.3 2 6.9E-05 45.2 3.0 25 41-65 60-84 (356)
418 1z2a_A RAS-related protein RAB 71.1 2.2 7.7E-05 38.5 3.0 21 44-64 7-27 (168)
419 2gxq_A Heat resistant RNA depe 71.0 6.2 0.00021 37.2 6.3 72 276-350 72-149 (207)
420 3cmu_A Protein RECA, recombina 71.0 3.1 0.00011 53.3 5.1 28 39-66 1078-1105(2050)
421 3lv8_A DTMP kinase, thymidylat 71.0 2.4 8.1E-05 41.9 3.2 22 41-62 26-47 (236)
422 1oix_A RAS-related protein RAB 70.9 2.2 7.6E-05 40.1 3.0 21 44-64 31-51 (191)
423 2f9l_A RAB11B, member RAS onco 70.9 2.2 7.5E-05 40.3 3.0 21 44-64 7-27 (199)
424 2r6a_A DNAB helicase, replicat 70.7 1.8 6.1E-05 47.3 2.6 27 39-65 200-226 (454)
425 1lw7_A Transcriptional regulat 70.7 1.9 6.4E-05 45.6 2.6 22 42-63 170-191 (365)
426 1q57_A DNA primase/helicase; d 70.4 3.1 0.00011 46.0 4.4 29 39-67 239-267 (503)
427 3qf4_A ABC transporter, ATP-bi 70.4 1.3 4.5E-05 50.1 1.4 23 40-62 367-389 (587)
428 2i1q_A DNA repair and recombin 70.1 2.2 7.6E-05 44.1 3.0 25 41-65 97-121 (322)
429 2ged_A SR-beta, signal recogni 70.1 2.4 8.2E-05 39.6 3.0 23 43-65 49-71 (193)
430 1tue_A Replication protein E1; 70.0 2.1 7.2E-05 41.3 2.5 18 43-60 59-76 (212)
431 3v9p_A DTMP kinase, thymidylat 70.0 2.1 7.1E-05 42.0 2.6 23 40-62 23-45 (227)
432 3b60_A Lipid A export ATP-bind 69.8 1.6 5.6E-05 49.3 2.0 23 40-62 367-389 (582)
433 3qkt_A DNA double-strand break 69.8 1.7 5.9E-05 45.4 2.1 20 43-62 24-43 (339)
434 1lkx_A Myosin IE heavy chain; 69.8 3.7 0.00013 47.1 5.0 44 24-67 71-122 (697)
435 3hjn_A DTMP kinase, thymidylat 69.8 4.2 0.00014 38.8 4.7 33 45-77 3-38 (197)
436 1ky3_A GTP-binding protein YPT 69.7 2.5 8.6E-05 38.7 3.0 22 44-65 10-31 (182)
437 3qf4_B Uncharacterized ABC tra 69.7 1.4 4.7E-05 50.1 1.4 24 40-63 379-402 (598)
438 2yv5_A YJEQ protein; hydrolase 69.7 3.3 0.00011 42.5 4.1 25 39-63 162-186 (302)
439 1kao_A RAP2A; GTP-binding prot 69.4 2.6 8.9E-05 37.9 3.0 21 44-64 5-25 (167)
440 2rcn_A Probable GTPase ENGC; Y 69.4 3.3 0.00011 43.6 4.1 25 39-63 212-236 (358)
441 1ek0_A Protein (GTP-binding pr 69.3 2.6 8.8E-05 38.1 3.0 21 44-64 5-25 (170)
442 1ltq_A Polynucleotide kinase; 69.3 2.3 7.8E-05 43.3 2.8 22 43-64 3-24 (301)
443 2wji_A Ferrous iron transport 69.1 2.6 8.9E-05 38.4 3.0 20 44-63 5-24 (165)
444 1z0j_A RAB-22, RAS-related pro 69.1 2.7 9.1E-05 38.0 3.0 22 44-65 8-29 (170)
445 2r2a_A Uncharacterized protein 69.0 2.9 9.8E-05 40.1 3.3 22 44-65 7-28 (199)
446 1u8z_A RAS-related protein RAL 69.0 2.7 9.1E-05 37.8 3.0 21 44-64 6-26 (168)
447 1g16_A RAS-related protein SEC 68.8 2.6 9.1E-05 38.1 2.9 22 44-65 5-26 (170)
448 2c9o_A RUVB-like 1; hexameric 68.6 4.2 0.00014 44.3 5.0 26 35-60 52-81 (456)
449 3pxg_A Negative regulator of g 68.4 3.4 0.00012 45.3 4.2 26 34-59 191-218 (468)
450 1u94_A RECA protein, recombina 68.2 3 0.0001 44.0 3.5 25 41-65 62-86 (356)
451 2erx_A GTP-binding protein DI- 67.9 2.9 0.0001 37.8 3.0 21 44-64 5-25 (172)
452 2grj_A Dephospho-COA kinase; T 67.9 2.7 9.1E-05 40.1 2.8 21 43-63 13-33 (192)
453 3pqc_A Probable GTP-binding pr 67.8 2.6 8.9E-05 39.2 2.7 23 43-65 24-46 (195)
454 1p5z_B DCK, deoxycytidine kina 67.8 2.1 7E-05 42.8 2.1 22 41-62 23-44 (263)
455 1u0l_A Probable GTPase ENGC; p 67.7 3.3 0.00011 42.4 3.7 24 39-62 166-189 (301)
456 1svi_A GTP-binding protein YSX 67.7 2.6 9E-05 39.3 2.7 22 43-64 24-45 (195)
457 1e69_A Chromosome segregation 67.6 1.9 6.6E-05 44.6 1.9 21 43-63 25-45 (322)
458 1c1y_A RAS-related protein RAP 67.6 2.9 0.0001 37.6 3.0 21 44-64 5-25 (167)
459 1wms_A RAB-9, RAB9, RAS-relate 67.5 3 0.0001 38.1 3.0 22 44-65 9-30 (177)
460 2q6t_A DNAB replication FORK h 67.5 2.3 7.9E-05 46.2 2.6 27 39-65 197-223 (444)
461 2wsm_A Hydrogenase expression/ 67.5 3.1 0.0001 40.0 3.2 24 42-65 30-53 (221)
462 2v26_A Myosin VI; calmodulin-b 67.4 4.3 0.00015 47.3 4.9 43 23-65 116-166 (784)
463 3cmw_A Protein RECA, recombina 67.3 6.3 0.00021 49.8 6.6 25 42-66 1431-1455(1706)
464 4a1f_A DNAB helicase, replicat 67.2 2.4 8.3E-05 44.3 2.5 28 38-65 42-69 (338)
465 2lkc_A Translation initiation 67.1 3.4 0.00012 37.7 3.4 23 42-64 8-30 (178)
466 4anj_A Unconventional myosin-V 67.1 4.4 0.00015 48.7 5.0 43 23-65 120-170 (1052)
467 2ocp_A DGK, deoxyguanosine kin 67.1 2.6 8.8E-05 41.4 2.6 22 42-63 2-23 (241)
468 1z08_A RAS-related protein RAB 67.1 3.1 0.00011 37.7 3.0 22 44-65 8-29 (170)
469 1nrj_B SR-beta, signal recogni 67.0 2.9 0.0001 39.9 3.0 23 43-65 13-35 (218)
470 1g41_A Heat shock protein HSLU 66.9 6.3 0.00022 42.7 5.8 21 43-63 51-71 (444)
471 2zej_A Dardarin, leucine-rich 66.8 2.6 9E-05 39.2 2.5 20 44-63 4-23 (184)
472 2wjg_A FEOB, ferrous iron tran 66.8 3.1 0.0001 38.6 3.0 22 43-64 8-29 (188)
473 2yl4_A ATP-binding cassette SU 66.6 1.8 6E-05 49.2 1.4 23 40-62 368-390 (595)
474 1r2q_A RAS-related protein RAB 66.3 3.2 0.00011 37.4 3.0 21 44-64 8-28 (170)
475 4hlc_A DTMP kinase, thymidylat 66.1 4.8 0.00016 38.7 4.3 20 43-62 3-22 (205)
476 3sfz_A APAF-1, apoptotic pepti 66.1 29 0.001 42.4 12.4 36 30-65 131-170 (1249)
477 2gj8_A MNME, tRNA modification 66.1 3 0.0001 38.4 2.7 23 42-64 4-26 (172)
478 3r20_A Cytidylate kinase; stru 66.0 3.6 0.00012 40.5 3.4 25 41-65 8-32 (233)
479 3tqf_A HPR(Ser) kinase; transf 65.9 3.1 0.00011 38.9 2.7 24 41-64 15-38 (181)
480 2fn4_A P23, RAS-related protei 65.8 3.3 0.00011 37.8 3.0 22 44-65 11-32 (181)
481 3bgw_A DNAB-like replicative h 65.8 2.5 8.7E-05 46.0 2.4 27 39-65 194-220 (444)
482 3q85_A GTP-binding protein REM 65.7 3.4 0.00011 37.4 3.0 20 44-63 4-23 (169)
483 4db1_A Myosin-7; S1DC, cardiac 65.7 4.9 0.00017 46.8 4.9 43 23-65 147-197 (783)
484 2y8e_A RAB-protein 6, GH09086P 65.7 3.3 0.00011 37.8 2.9 21 44-64 16-36 (179)
485 1w7j_A Myosin VA; motor protei 65.7 4.8 0.00017 46.9 4.9 44 23-66 132-183 (795)
486 2nzj_A GTP-binding protein REM 65.6 3.4 0.00012 37.5 3.0 20 44-63 6-25 (175)
487 2qm8_A GTPase/ATPase; G protei 65.6 2.9 9.9E-05 43.7 2.8 30 34-63 43-76 (337)
488 2hf9_A Probable hydrogenase ni 65.5 3.5 0.00012 39.7 3.2 24 43-66 39-62 (226)
489 3ake_A Cytidylate kinase; CMP 65.4 3.1 0.00011 39.4 2.8 20 44-63 4-23 (208)
490 2f6r_A COA synthase, bifunctio 65.0 3.1 0.00011 42.1 2.8 21 43-63 76-96 (281)
491 3con_A GTPase NRAS; structural 64.8 3.5 0.00012 38.3 3.0 21 44-64 23-43 (190)
492 3io5_A Recombination and repai 64.7 3.2 0.00011 42.9 2.8 22 44-65 30-51 (333)
493 1uj2_A Uridine-cytidine kinase 64.7 3.2 0.00011 41.1 2.8 18 43-60 23-40 (252)
494 2qag_B Septin-6, protein NEDD5 64.6 2.3 8E-05 45.8 1.8 25 39-63 37-63 (427)
495 1z0f_A RAB14, member RAS oncog 64.5 3.6 0.00012 37.5 3.0 22 44-65 17-38 (179)
496 3kkq_A RAS-related protein M-R 64.4 3.6 0.00012 37.9 3.0 20 44-63 20-39 (183)
497 2cxx_A Probable GTP-binding pr 64.4 3.4 0.00012 38.3 2.7 21 44-64 3-23 (190)
498 3lxx_A GTPase IMAP family memb 64.4 3.6 0.00012 40.3 3.0 21 43-63 30-50 (239)
499 1yqt_A RNAse L inhibitor; ATP- 64.3 2.7 9.1E-05 47.0 2.3 25 39-63 44-68 (538)
500 1w9i_A Myosin II heavy chain; 64.3 5.2 0.00018 46.4 4.7 43 23-65 148-198 (770)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1e-82 Score=752.06 Aligned_cols=548 Identities=29% Similarity=0.419 Sum_probs=467.2
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC-----CCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~-----~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
+..+|++.+|.++...+..+++++|+||||||||+++|+++++.. ...++|++|++.++.+++++++.+++..+|
T Consensus 90 r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~ 169 (773)
T 2xau_A 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLG 169 (773)
T ss_dssp HTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBT
T ss_pred hhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchh
Confidence 346899999999999999999999999999999999999987643 235999999999999999999999999999
Q ss_pred CeeeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 98 ~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
..+||.+++++....+++|+++|+|++++.+..+. .+.++++|||||+|+|+++.|+++.+++.+...+++.++|+|||
T Consensus 170 ~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SA 248 (773)
T 2xau_A 170 EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSA 248 (773)
T ss_dssp TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred heecceeccccccCCCCCEEEECHHHHHHHHhhCc-cccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 99999999888888899999999999999988764 46799999999999999999999999999998889999999999
Q ss_pred CCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhH
Q 004875 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (726)
Q Consensus 178 Tl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (726)
|++.+.+.+||+. .+++.+++ +.++++++|... +.. ..
T Consensus 249 T~~~~~l~~~~~~------~~vi~v~g----r~~pv~~~~~~~-----------------------~~~---------~~ 286 (773)
T 2xau_A 249 TLDAEKFQRYFND------APLLAVPG----RTYPVELYYTPE-----------------------FQR---------DY 286 (773)
T ss_dssp CSCCHHHHHHTTS------CCEEECCC----CCCCEEEECCSS-----------------------CCS---------CH
T ss_pred cccHHHHHHHhcC------CCcccccC----cccceEEEEecC-----------------------Cch---------hH
Confidence 9999999999975 44566665 345666555321 110 11
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcC---------CCCCcEEEEecCCCCHHHHHHHhhccC---
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP---------LSSFFKVHILHSSVDTEQALMAMKICK--- 325 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~---------~~~~~~v~~lh~~l~~~er~~~~~~f~--- 325 (726)
.+.....+..++.... ++++||||+++++++.+++.|.. ...++.+.++||+|++++|.++++.|+
T Consensus 287 ~~~~l~~l~~~~~~~~--~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 287 LDSAIRTVLQIHATEE--AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp HHHHHHHHHHHHHHSC--SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 1222344445554433 37999999999999999998863 225689999999999999999999998
Q ss_pred --CCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhh
Q 004875 326 --SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSF 402 (726)
Q Consensus 326 --~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~ 402 (726)
.|. +||||||++|+|||||+|++|||+|++|.+.||+..+++.+.+.|+|+++|.||+|||||.++|.||+||++.+
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~ 444 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEA 444 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHH
Confidence 777 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-hhccCCCCCcccccChHHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhH
Q 004875 403 F-GTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYG 481 (726)
Q Consensus 403 ~-~~l~~~~~pei~r~~L~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG 481 (726)
+ ..+.++..|||+|++|..++|+++.++ +++... |+|++||+.+++..|++.|..+||||. + | ++|++|
T Consensus 445 ~~~~l~~~~~pEi~r~~L~~~~L~l~~~g---i~~~~~--f~~~~~p~~~~i~~a~~~L~~lgald~-~--~--~lT~lG 514 (773)
T 2xau_A 445 FQKELIEQSYPEILRSNLSSTVLELKKLG---IDDLVH--FDFMDPPAPETMMRALEELNYLACLDD-E--G--NLTPLG 514 (773)
T ss_dssp HHHTSCSSCCCGGGGSCCHHHHHHHHHTT---CCCGGG--CCCSSCCCHHHHHHHHHHHHHTTSBCT-T--S--CBCHHH
T ss_pred hcccccccCCCccccCcHHHHHHHHHHcC---CCChhh--ccccCCCcHHHHHHHHHHHHHcCCccc-C--C--CcChhh
Confidence 9 679999999999999999999997654 444434 499999999999999999999999987 3 6 599999
Q ss_pred HHHHhCCCChHHHHHHHhhcccCCHHHHHHHHHHhccCCCcccCCCCchHHHHHHhccccCCCCCcccccccchhhHHHH
Q 004875 482 RLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGN 561 (726)
Q Consensus 482 ~~l~~lpl~p~~~~~l~~~~~~~c~~e~l~i~a~ls~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ 561 (726)
+.|+.||++|++||||+.+..++|++++++|||||++++ +|++|.+.+++++.++.+|.+++| ||++.
T Consensus 515 ~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~-~f~~~~~~~~~~~~~~~~f~~~~~-----------D~~~~ 582 (773)
T 2xau_A 515 RLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKRADDAKNIFAHPDG-----------DHITL 582 (773)
T ss_dssp HHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCC-CBCCCTTCHHHHHHHHHTTCCTTB-----------HHHHH
T ss_pred hhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCC-cccCChHHHHHHHHHHHhccCCCC-----------cHHHH
Confidence 999999999999999999999999999999999999864 899999988888888888887655 99999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhCCCccccCC
Q 004875 562 LCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSN 641 (726)
Q Consensus 562 ~~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~~~~~~~~~ 641 (726)
+|+|+.|...... ......||++||||+++|++|.+++.||.++|++++++..+...
T Consensus 583 l~~~~~~~~~~~~-----------------------~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~ 639 (773)
T 2xau_A 583 LNVYHAFKSDEAY-----------------------EYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDY 639 (773)
T ss_dssp HHHHHHHTSHHHH-----------------------HHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCT
T ss_pred HHHHHHHHHhccc-----------------------cchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 9999999753210 01126899999999999999999999999999998886544211
Q ss_pred CCCCCCCCCccccchhccCCCC
Q 004875 642 GLPTYYDPYEFEHTCLLNCDPP 663 (726)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~l~ 663 (726)
..+ ..+...++|+..|++.
T Consensus 640 ~~~---~~~~~i~~~l~~g~~~ 658 (773)
T 2xau_A 640 ESP---KYFDNIRKALASGFFM 658 (773)
T ss_dssp TST---THHHHHHHHHHHHHTT
T ss_pred Cch---hhHHHHHHHHHHhChH
Confidence 101 1235567777777664
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.3e-53 Score=497.92 Aligned_cols=462 Identities=15% Similarity=0.082 Sum_probs=319.0
Q ss_pred CcHHHHHHHHHH-HHcCCcEEEEcCCCChHhHHHHHHHHhc---CCCcEEEecchHHHHHHHHHHHH--hhcCCccCCee
Q 004875 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVA--KGRNCELGGEV 100 (726)
Q Consensus 27 Pi~~~Q~~il~~-i~~~~~vii~a~TGSGKTt~ip~~lle~---~~~~Iivt~Prrlaa~~~a~~va--~~~~~~lg~~V 100 (726)
.++++|.++++. +.++++++|+||||||||+++++++++. ...++++++|++.++.++++++. ..+|..+|..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 568999999999 7889999999999999999999998753 34689999999999999999883 23455666666
Q ss_pred eeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCC
Q 004875 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (726)
Q Consensus 101 gy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~ 180 (726)
|+..+.++.. ..++|+|+|||+|.+.+..+...+.++++|||||||+.. +.++ ...++.++.+.+++|+|+||||++
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~~~-~~~l~~i~~~~~~~~ii~lSATl~ 186 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DPER-GPVVESVTIRAKRRNLLALSATIS 186 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CTTT-HHHHHHHHHHHHTSEEEEEESCCT
T ss_pred CCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-Cccc-chHHHHHHHhcccCcEEEEcCCCC
Confidence 6655444433 379999999999999988876556799999999999643 2222 233444443334899999999985
Q ss_pred -HHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHH
Q 004875 181 -ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHK 259 (726)
Q Consensus 181 -~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 259 (726)
.+.+++|++. +++..+.+ .+++...+.... .........|........ .......
T Consensus 187 n~~~~~~~l~~-------~~~~~~~r----~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~---~~~~~~~- 242 (715)
T 2va8_A 187 NYKQIAKWLGA-------EPVATNWR----PVPLIEGVIYPE---------RKKKEYNVIFKDNTTKKV---HGDDAII- 242 (715)
T ss_dssp THHHHHHHHTC-------EEEECCCC----SSCEEEEEEEEC---------SSTTEEEEEETTSCEEEE---ESSSHHH-
T ss_pred CHHHHHHHhCC-------CccCCCCC----CCCceEEEEecC---------CcccceeeecCcchhhhc---ccchHHH-
Confidence 8999999963 23333222 222221110000 000000011111000000 0011122
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCC----------------------------------cEE
Q 004875 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF----------------------------------FKV 305 (726)
Q Consensus 260 li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~----------------------------------~~v 305 (726)
..+..+.. .++++||||+++++++.+++.|...... ..+
T Consensus 243 ---~~~~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 243 ---AYTLDSLS----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp ---HHHHHHHT----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred ---HHHHHHHh----cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 22333222 2479999999999999999988743211 358
Q ss_pred EEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcC
Q 004875 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (726)
Q Consensus 306 ~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~G 384 (726)
.++||+|+.++|..+++.|++|. +|||||+++|+|||+|++++||++ ..+||+..+.. ..|+|.+++.||+|
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSG 388 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHT
T ss_pred EEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhh
Confidence 99999999999999999999888 999999999999999999999985 34577654332 67899999999999
Q ss_pred CCCCCC---CceEEEeechhh-Hhhcc---CCCCCcccccChHH------HHHHHhhhhc-ccCCChhhhcc-cCCC-CC
Q 004875 385 RTGRTC---DGQVYRLVTKSF-FGTLE---DHECPAILRLSLRL------QVLLICCAES-KAISDPKVLLQ-KALD-PP 448 (726)
Q Consensus 385 RaGR~~---~G~~~~L~s~~~-~~~l~---~~~~pei~r~~L~~------~iL~l~~~~~-~~l~~~~~~~~-~~l~-pP 448 (726)
||||.+ +|.||+++++.+ +..+. -...||+++++|.. .+|.+...+. ....+...|+. .|+. +|
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~ 468 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQL 468 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHH
T ss_pred hcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhc
Confidence 999996 899999998765 33221 24678999988764 5555544331 11122233322 3443 45
Q ss_pred CHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhccc---CCHHHHHHHHHHhccCCCcccC
Q 004875 449 YPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI---GMLREGILLGILMDTQPLPILH 525 (726)
Q Consensus 449 ~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~~---~c~~e~l~i~a~ls~~~~~~~~ 525 (726)
+...+..|++.|.++|+|+. ++ +...+|++|+.|+.+|++|+++++++.+... .|..+++.|.|+.+..+..+++
T Consensus 469 ~~~~~~~al~~L~~~g~i~~-~~-~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r 546 (715)
T 2va8_A 469 VDVYFDRAIRWLLEHSFIKE-EG-NTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVG 546 (715)
T ss_dssp HHHHHHHHHHHHHHTTSEEE-CS-SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCC
T ss_pred chHHHHHHHHHHHHCcCEee-cC-CeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccC
Confidence 56679999999999999987 31 3457999999999999999999999999887 7999999998887755556666
Q ss_pred CCCchH
Q 004875 526 PFGDDA 531 (726)
Q Consensus 526 p~~~~~ 531 (726)
|.+.+.
T Consensus 547 ~~e~~~ 552 (715)
T 2va8_A 547 RNEEEE 552 (715)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 654443
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.5e-50 Score=477.85 Aligned_cols=446 Identities=17% Similarity=0.163 Sum_probs=324.4
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHh--hcCCccCCeeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAK--GRNCELGGEVGY 102 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~--~~~~~lg~~Vgy 102 (726)
.++++|.++++.+.++++++++||||||||+++++++++. ...++++++|++.++.+.++++.. ..|..++..+|+
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~ 104 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGD 104 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5688999999999999999999999999999998888754 246899999999999999998832 234455555555
Q ss_pred eeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccc-----ccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE-----RSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 103 ~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHe-----R~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
..+.++. ...++|+|+|||++.+.+..+...+.++++|||||||+ |....+.++..++ ..++++|+|+|||
T Consensus 105 ~~~~~~~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~~~~ii~lSA 180 (702)
T 2p6r_A 105 YESRDEH-LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR---RMNKALRVIGLSA 180 (702)
T ss_dssp CBCCSSC-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH---HHCTTCEEEEEEC
T ss_pred CCcchhh-ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHH---hcCcCceEEEECC
Confidence 5444433 34799999999999999888665567999999999996 4444444444433 4567899999999
Q ss_pred CCC-HHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChh
Q 004875 178 TAD-ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (726)
Q Consensus 178 Tl~-~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (726)
|++ .+.+++|++. +++..+.+ .+++...+.. .. ...+...... ....+.
T Consensus 181 Tl~n~~~~~~~l~~-------~~~~~~~r----~~~l~~~~~~------------~~---~~~~~~~~~~--~~~~~~-- 230 (702)
T 2p6r_A 181 TAPNVTEIAEWLDA-------DYYVSDWR----PVPLVEGVLC------------EG---TLELFDGAFS--TSRRVK-- 230 (702)
T ss_dssp CCTTHHHHHHHTTC-------EEEECCCC----SSCEEEEEEC------------SS---EEEEEETTEE--EEEECC--
T ss_pred CcCCHHHHHHHhCC-------CcccCCCC----CccceEEEee------------CC---eeeccCcchh--hhhhhh--
Confidence 985 8999999862 33333332 2222221100 00 0000000000 000000
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCC----------------------------CcEEEEe
Q 004875 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS----------------------------FFKVHIL 308 (726)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~----------------------------~~~v~~l 308 (726)
.. +.+..... .++++||||+++++++.++..|..... +..+.++
T Consensus 231 ~~----~~~~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~ 302 (702)
T 2p6r_A 231 FE----ELVEECVA----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFH 302 (702)
T ss_dssp HH----HHHHHHHH----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEE
T ss_pred HH----HHHHHHHh----cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEe
Confidence 12 22222222 137999999999999999888753200 1357889
Q ss_pred cCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCC
Q 004875 309 HSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG 387 (726)
Q Consensus 309 h~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaG 387 (726)
||+|+.++|..+++.|++|. +|||||+++++|||+|++++||++ ..+|| +. ..|+|.+++.||+||||
T Consensus 303 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBS
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcC
Confidence 99999999999999999888 999999999999999999999985 44577 11 67899999999999999
Q ss_pred CCC---CceEEEeechhhHhhccC---CCCCcccccChHH------HHHHHhhhhc-ccCCChhhhcc-cCC----CCCC
Q 004875 388 RTC---DGQVYRLVTKSFFGTLED---HECPAILRLSLRL------QVLLICCAES-KAISDPKVLLQ-KAL----DPPY 449 (726)
Q Consensus 388 R~~---~G~~~~L~s~~~~~~l~~---~~~pei~r~~L~~------~iL~l~~~~~-~~l~~~~~~~~-~~l----~pP~ 449 (726)
|.+ +|.||.++++.++..+.+ ...||+++++|.. .++.+...+. .+..+...|+. .|+ ++|.
T Consensus 372 R~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~ 451 (702)
T 2p6r_A 372 RPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL 451 (702)
T ss_dssp CTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC
T ss_pred CCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHH
Confidence 996 899999999887654322 4679999988764 4444433321 11112222321 222 3788
Q ss_pred HHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhccc--CCHHHHHHHHHHhccCCCcccCCC
Q 004875 450 PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI--GMLREGILLGILMDTQPLPILHPF 527 (726)
Q Consensus 450 ~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~~--~c~~e~l~i~a~ls~~~~~~~~p~ 527 (726)
.+.+..|++.|.+.|+|+. + +...+|++|+.|+.+|++|+.+++++.+... .|..+++.|.|+.+..+..+++|.
T Consensus 452 ~~~~~~al~~L~~~g~i~~-~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~ 528 (702)
T 2p6r_A 452 SYELERVVRQLENWGMVVE-A--AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKT 528 (702)
T ss_dssp HHHHHHHHHHHHHTTSEEE-S--SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTT
T ss_pred HHHHHHHHHHHHHCcCeeE-C--CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCc
Confidence 9999999999999999987 3 4467999999999999999999999999887 899999999988876666677777
Q ss_pred C
Q 004875 528 G 528 (726)
Q Consensus 528 ~ 528 (726)
+
T Consensus 529 e 529 (702)
T 2p6r_A 529 D 529 (702)
T ss_dssp T
T ss_pred h
Confidence 6
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-47 Score=454.46 Aligned_cols=446 Identities=14% Similarity=0.119 Sum_probs=308.8
Q ss_pred CcHHHHHHHHHH-HHcCCcEEEEcCCCChHhHHHHHHHHhc---CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 27 Pi~~~Q~~il~~-i~~~~~vii~a~TGSGKTt~ip~~lle~---~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
.++++|.++++. +.++++++++||||||||+++++++++. ...++++++|++.++.+++++++. +. ..|..|+.
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~-l~-~~g~~v~~ 100 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQD-WE-KIGLRVAM 100 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGG-GG-GGTCCEEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHH-HH-hcCCEEEE
Confidence 679999999998 8899999999999999999988887643 236899999999999999999852 11 12334444
Q ss_pred eec---cccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccc-----cccccccHHHHHHHHHHhcCCCceEEE
Q 004875 103 HIG---HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH-----ERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 103 ~v~---~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH-----eR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
.++ .+......++|+|+|||++.+.+..+...+.++++||||||| +|....+.++..++ .+.|+|+
T Consensus 101 ~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~~~~ii~ 174 (720)
T 2zj8_A 101 ATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------GKAQIIG 174 (720)
T ss_dssp ECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------TTBEEEE
T ss_pred ecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------cCCeEEE
Confidence 333 222233478999999999999988766556799999999999 34333333333222 3799999
Q ss_pred eccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 004875 175 MSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (726)
Q Consensus 175 mSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (726)
||||+ +.+.+.+|++. ..+..+.+ .++....+... . ...|...... .
T Consensus 175 lSATl~n~~~~~~~l~~-------~~~~~~~r----p~~l~~~~~~~------------~---~~~~~~~~~~------~ 222 (720)
T 2zj8_A 175 LSATIGNPEELAEWLNA-------ELIVSDWR----PVKLRRGVFYQ------------G---FVTWEDGSID------R 222 (720)
T ss_dssp EECCCSCHHHHHHHTTE-------EEEECCCC----SSEEEEEEEET------------T---EEEETTSCEE------E
T ss_pred EcCCcCCHHHHHHHhCC-------cccCCCCC----CCcceEEEEeC------------C---eeeccccchh------h
Confidence 99998 78999999863 22222221 12222111000 0 0001000000 0
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCC-------------------------------C
Q 004875 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------------F 302 (726)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~-------------------------------~ 302 (726)
..... .++.++... ++++||||+++++++.++..|..... .
T Consensus 223 ~~~~~----~~~~~~~~~----~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 223 FSSWE----ELVYDAIRK----KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp CSSTT----HHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred hhHHH----HHHHHHHhC----CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 00111 222222221 37999999999999999888763210 1
Q ss_pred cEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHH
Q 004875 303 FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 381 (726)
Q Consensus 303 ~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~Q 381 (726)
..+.++||+|+.++|..+++.|++|. +|||||+++++|||+|++++||+.+ .+|| .. ...|+|.+++.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~-----g~~~~s~~~~~Q 364 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DF-----GMERIPIIEVHQ 364 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SS-----SCEECCHHHHHH
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CC-----CCccCCHHHHHH
Confidence 24899999999999999999999888 9999999999999999999999854 3366 22 236889999999
Q ss_pred HcCCCCCCC---CceEEEeechhhHh----hccCCCCCccccc-----ChHHHHHHHhhhhc-ccCCChhhhc-ccCC--
Q 004875 382 RRGRTGRTC---DGQVYRLVTKSFFG----TLEDHECPAILRL-----SLRLQVLLICCAES-KAISDPKVLL-QKAL-- 445 (726)
Q Consensus 382 R~GRaGR~~---~G~~~~L~s~~~~~----~l~~~~~pei~r~-----~L~~~iL~l~~~~~-~~l~~~~~~~-~~~l-- 445 (726)
|+|||||.+ +|.||.++++.++. .+.....+++... .|...++.+...+. .+..+...++ +.|+
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~ 444 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY 444 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHH
Confidence 999999985 79999999976532 3333333333322 24444554433221 0111122222 1222
Q ss_pred ----CCCCHHHHHHHHHHHHHcCccc-cCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhccc----CCHHHHHHHHHHh
Q 004875 446 ----DPPYPEVVGDALDLLDHKRALQ-KISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI----GMLREGILLGILM 516 (726)
Q Consensus 446 ----~pP~~~~i~~al~~L~~lgal~-~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~~----~c~~e~l~i~a~l 516 (726)
++|..+.+..|++.|.+.|+|+ . + .+.+.+|++|+.|+.+|++|..+++++.+... +|..+++.|+|++
T Consensus 445 ~~~~~~~~~~~~~~~l~~L~~~~~i~~~-~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 522 (720)
T 2zj8_A 445 QRKDTYSLEEKIRNILYFLLENEFIEIS-L-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLT 522 (720)
T ss_dssp HCSCCHHHHHHHHHHHHHHHHTTSEEEC-T-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTS
T ss_pred hccchHHHHHHHHHHHHHHHHCCCeeEC-C-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccC
Confidence 3334578999999999999998 5 2 24567999999999999999999999998877 8999999999998
Q ss_pred ccCCCcccCCCCchHH
Q 004875 517 DTQPLPILHPFGDDAL 532 (726)
Q Consensus 517 s~~~~~~~~p~~~~~~ 532 (726)
+..+..+++|.+.+..
T Consensus 523 ~e~~~i~~r~~e~~~l 538 (720)
T 2zj8_A 523 PDITPFNYSKREFERL 538 (720)
T ss_dssp TTCCCCCCCHHHHHHH
T ss_pred ccccccccCHHHHHHH
Confidence 8656667777554443
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=344.47 Aligned_cols=316 Identities=18% Similarity=0.225 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
.+++++|.++++.+.+++++++++|||||||+++..++++. ...+++++.|++.++.++++.+..... ..+..+
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~ 139 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD-YMGASC 139 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG-GSCCCE
T ss_pred CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc-ccCceE
Confidence 35789999999999999999999999999999988888764 234788889999888888888776432 334444
Q ss_pred eeeecccc-------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEE
Q 004875 101 GYHIGHSK-------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (726)
Q Consensus 101 gy~v~~~~-------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklI 173 (726)
+..++... .....++|+|+||++|++.+..+.+.+.++++||||||| +..+.++...+.+.+...+++.++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~~~~~~~~~~~~i 218 (414)
T 3eiq_A 140 HACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD-EMLSRGFKDQIYDIFQKLNSNTQVV 218 (414)
T ss_dssp EECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH-HHHHTTTHHHHHHHHTTSCTTCEEE
T ss_pred EEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH-HhhccCcHHHHHHHHHhCCCCCeEE
Confidence 44333221 123678999999999999998877667789999999999 4556666666666666667889999
Q ss_pred EeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 004875 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (726)
Q Consensus 174 lmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (726)
+||||++.+.....-..... +..+ ...... ...... ...+.. ...
T Consensus 219 ~~SAT~~~~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~~-----------------------~~~~~~--------~~~ 263 (414)
T 3eiq_A 219 LLSATMPSDVLEVTKKFMRD--PIRI-LVKKEE-LTLEGI-----------------------RQFYIN--------VER 263 (414)
T ss_dssp EECSCCCHHHHHHHTTTCSS--CEEE-CCCCCC-CCTTSC-----------------------CEEEEE--------CSS
T ss_pred EEEEecCHHHHHHHHHHcCC--CEEE-EecCCc-cCCCCc-----------------------eEEEEE--------eCh
Confidence 99999976544332222111 1111 111100 000000 000000 000
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEE
Q 004875 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (726)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlv 332 (726)
..... ..+..+..... .+++||||+++++++.+++.|... ++.+..+||+++.++|..+++.|+++. +|||
T Consensus 264 ~~~~~----~~l~~~~~~~~--~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 335 (414)
T 3eiq_A 264 EEWKL----DTLCDLYETLT--ITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 335 (414)
T ss_dssp STTHH----HHHHHHHHSSC--CSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC---CEE
T ss_pred HHhHH----HHHHHHHHhCC--CCcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 00111 22333333333 368999999999999999999854 578999999999999999999999988 9999
Q ss_pred EcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 333 aTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
||+++++|||+|++++||+ ||++.+. .+|.||+|||||. ++|.||.+|++.+..
T Consensus 336 ~T~~~~~Gidip~v~~Vi~--------~~~p~s~----------~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 390 (414)
T 3eiq_A 336 TTDLLARGIDVQQVSLVIN--------YDLPTNR----------ENYIHRIGRGGRFGRKGVAINMVTEEDKR 390 (414)
T ss_dssp ECSSCC--CCGGGCSCEEE--------SSCCSST----------HHHHHHSCCC-------CEEEEECSTHHH
T ss_pred ECCccccCCCccCCCEEEE--------eCCCCCH----------HHhhhhcCcccCCCCCceEEEEEcHHHHH
Confidence 9999999999999999999 8887644 4559999999999 689999999987654
No 6
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.8e-38 Score=358.75 Aligned_cols=300 Identities=22% Similarity=0.209 Sum_probs=221.9
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
+..||++.+|+++++.+.++++++++||||||||+++++++++.+ .++++++|+|.+|.++++++++.++..++..+|+
T Consensus 213 r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g-~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~ 291 (666)
T 3o8b_A 213 TMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGV 291 (666)
T ss_dssp HHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT-CCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSS
T ss_pred hccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCC-CeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECc
Confidence 346899999999999999999999999999999999999999865 3788999999999999999999888776665555
Q ss_pred eeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHH
Q 004875 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADIT 182 (726)
Q Consensus 103 ~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~ 182 (726)
.. ...+++|+|+|||+|+ ....+.+.++++|||||||++..+.+..+..+...+.......+++||||++..
T Consensus 292 ~~-----~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 292 RT-----ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp CE-----ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred Ee-----ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc
Confidence 42 4567899999999984 444556668999999999977665555455445444444444578889998742
Q ss_pred HHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHH
Q 004875 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIH 262 (726)
Q Consensus 183 ~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~ 262 (726)
+. ...+ ...++...+.. . ..+. .....
T Consensus 364 -----i~---~~~p------------~i~~v~~~~~~------------~-----i~~~--------~~~~~-------- 390 (666)
T 3o8b_A 364 -----VT---VPHP------------NIEEVALSNTG------------E-----IPFY--------GKAIP-------- 390 (666)
T ss_dssp -----CC---CCCT------------TEEEEECBSCS------------S-----EEET--------TEEEC--------
T ss_pred -----cc---cCCc------------ceEEEeecccc------------h-----hHHH--------Hhhhh--------
Confidence 11 0000 00111100000 0 0000 00000
Q ss_pred HHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEccccccccc
Q 004875 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVT 342 (726)
Q Consensus 263 ~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae~GId 342 (726)
+ ... .++++||||+++++++.+++.|+.. ++.+..+||++++++ .++++++||||||++|+|||
T Consensus 391 -----l-~~~--~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~e------r~~~~~~VLVATdVaerGID 454 (666)
T 3o8b_A 391 -----I-EAI--RGGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSV------IPTIGDVVVVATDALMTGYT 454 (666)
T ss_dssp -----G-GGS--SSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGG------SCSSSCEEEEECTTHHHHCC
T ss_pred -----h-hhc--cCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHH------HHhCCCcEEEECChHHccCC
Confidence 0 001 2479999999999999999999854 588999999998764 23455599999999999999
Q ss_pred CCCeeEEEeCCCceeee----ecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 343 IPKVAYVIDSCRSLQVF----WDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 343 ip~v~~VId~G~~k~~~----yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
+| |++|||+|+.+..+ ||+..++.. ...|+|.++|.||+|||||.++|. |.||++.+.
T Consensus 455 Id-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 455 GD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp CC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred CC-CcEEEecCccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 97 99999999988775 344455544 367999999999999999988999 999997654
No 7
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-37 Score=372.52 Aligned_cols=352 Identities=16% Similarity=0.177 Sum_probs=241.3
Q ss_pred CCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
-.++++++|.++++.+.++++++++||||||||+++..++++. ...+++++.|++.++.+.++++...++ .||
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~Vg 255 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVG 255 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS-----SEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC-----Ccc
Confidence 3467899999999999999999999999999998877776654 346899999999999999999988765 467
Q ss_pred eeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC-C
Q 004875 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-D 180 (726)
Q Consensus 102 y~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl-~ 180 (726)
+. .++.....+++|+|||||+|.+.+..+...+.++++||||||| +..+.++...+...+...+++.++|+||||+ +
T Consensus 256 ll-tGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn 333 (1108)
T 3l9o_A 256 LM-TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIPN 333 (1108)
T ss_dssp EE-CSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSS
T ss_pred EE-eCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCceEEEEcCCCCC
Confidence 65 3444456789999999999999998876556699999999999 7777666665555555667889999999997 6
Q ss_pred HHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhH-------------------HHHHHHhccCCC-Cccccccccc
Q 004875 181 ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYL-------------------EQVTELLGVDHG-MTSELSSLRY 240 (726)
Q Consensus 181 ~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl-------------------~~~~~~~~~~~~-~~~~~~~~~y 240 (726)
...+..|+..... .++.++..+.++. +...++. ............ ........ .
T Consensus 334 ~~e~a~~l~~~~~-~~~~vi~~~~rp~----pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 407 (1108)
T 3l9o_A 334 AMEFAEWICKIHS-QPCHIVYTNFRPT----PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST-D 407 (1108)
T ss_dssp CHHHHHHHHHHTC-SCEEEEEECCCSS----CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHhhcC-CCeEEEecCCCcc----cceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccc-c
Confidence 6788899876432 2334443333221 1111100 000000000000 00000000 0
Q ss_pred cCCCC-CCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCC------------------
Q 004875 241 CSGPS-PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS------------------ 301 (726)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~------------------ 301 (726)
..+.. ...............+..++..+.... .+++||||+++.+++.++..|...+.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~---~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 484 (1108)
T 3l9o_A 408 SRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKK---YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 484 (1108)
T ss_dssp -----------------CHHHHHHHHHHHHHTT---CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCT
T ss_pred cccccccccccccccccchhHHHHHHHHHHhcC---CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 00000 000000000000223334444444332 36999999999999999999864210
Q ss_pred -------------------CcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeec
Q 004875 302 -------------------FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWD 361 (726)
Q Consensus 302 -------------------~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd 361 (726)
...+..+||+|++.+|..+++.|+.|. +|||||+++++|||+|++++||+ |+
T Consensus 485 ~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~--------~~ 556 (1108)
T 3l9o_A 485 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT--------SV 556 (1108)
T ss_dssp HHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEES--------CS
T ss_pred hcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEe--------cC
Confidence 012899999999999999999999888 99999999999999999999998 44
Q ss_pred CCCCccccceEeecHHhHHHHcCCCCCCC---CceEEEeechh
Q 004875 362 VNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKS 401 (726)
Q Consensus 362 ~~~~~~~l~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~ 401 (726)
.+.+.. ...|+|.++|.||+|||||.+ .|.||.++++.
T Consensus 557 ~~~d~~--~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 557 RKWDGQ--QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EEESSS--CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred cccCcc--ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 333332 356899999999999999996 89999999864
No 8
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6e-36 Score=333.27 Aligned_cols=309 Identities=18% Similarity=0.227 Sum_probs=217.3
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh----cC------CCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA----EN------MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle----~~------~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.+++|.++++.+.++++++++||||||||.++...+++ .. ...++++.|++.++.++++.+.+... ..+
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~-~~~ 157 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAF-ESY 157 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTT-TSS
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhc-cCC
Confidence 57999999999999999999999999999766555443 21 23788888888888888877665432 222
Q ss_pred Ceeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh--cCCC
Q 004875 98 GEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL--KKND 169 (726)
Q Consensus 98 ~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~--~~~~ 169 (726)
..++..++.. .....+.+|+|+|||+|++.+....+.+.++++||||||| +.++.+|...+.+.+.. .+++
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~~~~i~~~~~~~~~ 236 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSEDMRRIMTHVTMRPE 236 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHHHHHHHHCTTSCSS
T ss_pred cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHHHHHHHHhcCCCCC
Confidence 2222222221 2234678999999999999998877777899999999999 77777776655444433 2578
Q ss_pred ceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 004875 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (726)
Q Consensus 170 lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 249 (726)
.+++++|||++.+. .++...... .+. .+.+.... .....+.. .+...
T Consensus 237 ~q~l~~SAT~~~~~-~~~~~~~l~-~~~-~i~~~~~~-~~~~~i~~-----------------------~~~~~------ 283 (434)
T 2db3_A 237 HQTLMFSATFPEEI-QRMAGEFLK-NYV-FVAIGIVG-GACSDVKQ-----------------------TIYEV------ 283 (434)
T ss_dssp CEEEEEESCCCHHH-HHHHHTTCS-SCE-EEEESSTT-CCCTTEEE-----------------------EEEEC------
T ss_pred ceEEEEeccCCHHH-HHHHHHhcc-CCE-EEEecccc-ccccccce-----------------------EEEEe------
Confidence 89999999997542 233222111 111 11111100 00000000 00000
Q ss_pred ccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-
Q 004875 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (726)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r- 328 (726)
. ...... .++..+. ... +++||||+++++++.+++.|... ++.+..+||++++++|..+++.|++++
T Consensus 284 --~-~~~k~~---~l~~~l~-~~~---~~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 351 (434)
T 2db3_A 284 --N-KYAKRS---KLIEILS-EQA---DGTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSM 351 (434)
T ss_dssp --C-GGGHHH---HHHHHHH-HCC---TTEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSC
T ss_pred --C-cHHHHH---HHHHHHH-hCC---CCEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 0 000111 2222222 222 35999999999999999999854 588999999999999999999999998
Q ss_pred EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 329 kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
+|||||+++++|||+|+|++||+ ||.+.+. .+|.||+||+||. ..|.|+.+|+++
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~VI~--------~d~p~~~----------~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHVIN--------YDMPSKI----------DDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEEEE--------SSCCSSH----------HHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred cEEEEchhhhCCCCcccCCEEEE--------ECCCCCH----------HHHHHHhcccccCCCCCEEEEEEecc
Confidence 99999999999999999999999 9988754 4559999999999 789999999853
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1e-35 Score=327.29 Aligned_cols=313 Identities=17% Similarity=0.191 Sum_probs=221.8
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
++++|.++++.+.+++++++++|||||||+++...+++. ...+++++.|++.++.+.++++..... ..|..++.
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~~ 122 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK-HCGISCMV 122 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT-TTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhc-ccCceEEE
Confidence 689999999999999999999999999998877776654 234688888988888888887766432 23433443
Q ss_pred eeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 103 HIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 103 ~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
..+.. .......+|+|+||+.|++.+......+.++++||||||| +..+.++...+.+.+...++..++++||
T Consensus 123 ~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 123 TTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD-KMLSRDFKTIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-HHSSHHHHHHHHHHHTTSCSSCEEEEEE
T ss_pred EeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-HhhhhchHHHHHHHHHhCCcCceEEEEE
Confidence 33222 1224678999999999999888766667799999999999 5556555444333333345678999999
Q ss_pred cCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChh
Q 004875 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (726)
Q Consensus 177 ATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (726)
||++.............+ ..+....... ......+ +... . ...
T Consensus 202 AT~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~-----------------------~~~~--------~-~~~ 244 (400)
T 1s2m_A 202 ATFPLTVKEFMVKHLHKP--YEINLMEELT---LKGITQY-----------------------YAFV--------E-ERQ 244 (400)
T ss_dssp SCCCHHHHHHHHHHCSSC--EEESCCSSCB---CTTEEEE-----------------------EEEC--------C-GGG
T ss_pred ecCCHHHHHHHHHHcCCC--eEEEeccccc---cCCceeE-----------------------EEEe--------c-hhh
Confidence 999865433333322221 1110000000 0000000 0000 0 001
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc
Q 004875 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (726)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn 335 (726)
....+..+ ..... .+++||||+++++++.+++.|... ++.+..+||+++.++|..+++.|+++. +|||||+
T Consensus 245 k~~~l~~~----~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 245 KLHCLNTL----FSKLQ--INQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp HHHHHHHH----HHHSC--CSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred HHHHHHHH----HhhcC--CCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 11222222 22222 369999999999999999999854 478999999999999999999999888 9999999
Q ss_pred cccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHhh
Q 004875 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (726)
Q Consensus 336 iae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~~ 405 (726)
++++|+|+|++++||+ ||++. |..++.||+|||||. ++|.|+.+|++.+...
T Consensus 317 ~~~~Gidip~~~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVIN--------FDFPK----------TAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp CSSSSCCCTTEEEEEE--------SSCCS----------SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred ccccCCCccCCCEEEE--------eCCCC----------CHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 9999999999999999 88776 555669999999999 7899999999876543
No 10
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-35 Score=373.72 Aligned_cols=453 Identities=15% Similarity=0.173 Sum_probs=283.8
Q ss_pred cHHHHHHHHHHHH-cCCcEEEEcCCCChHhHHHHHHHHhc-------------CCCcEEEecchHHHHHHHHHHHHhhcC
Q 004875 28 VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLLAE-------------NMEPILCTQPRRFAVVAVAKMVAKGRN 93 (726)
Q Consensus 28 i~~~Q~~il~~i~-~~~~vii~a~TGSGKTt~ip~~lle~-------------~~~~Iivt~Prrlaa~~~a~~va~~~~ 93 (726)
++++|.++++.+. .+++++|+||||||||..+-..++.. ...+++++.|.+.++.+..+.+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 5689999999865 68899999999999996655544421 123688888888888888888776554
Q ss_pred CccCCeeeeeecccc---ccCCCCeEEEEChHHHHHHHHhcCC--CCCceeEEEEccccc----ccccccHHHHHH-HHH
Q 004875 94 CELGGEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHE----RSVESDLVLVCV-KQL 163 (726)
Q Consensus 94 ~~lg~~Vgy~v~~~~---~~~~~~~Iiv~T~g~Ll~~l~~~~l--~l~~~~~VIIDEaHe----R~~~~d~ll~~l-k~l 163 (726)
.+|-.|+-..+... .....++|+|||||.+...+..... .+.++++|||||+|- |+...+.++..+ +..
T Consensus 160 -~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~ 238 (1724)
T 4f92_B 160 -TYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 238 (1724)
T ss_dssp -TTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred -hCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHH
Confidence 34544554433221 1224689999999998544433211 245899999999992 222112222212 222
Q ss_pred HhcCCCceEEEeccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccC
Q 004875 164 LLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (726)
Q Consensus 164 ~~~~~~lklIlmSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~ 242 (726)
....+++|+|+||||+ |.+.+++|++.. ....+...... .+..+.+..+ ..
T Consensus 239 ~~~~~~~riI~LSATl~N~~dvA~wL~~~---~~~~~~~~~~~--~RPvpL~~~~-----------------------~~ 290 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPNYEDVATFLRVD---PAKGLFYFDNS--FRPVPLEQTY-----------------------VG 290 (1724)
T ss_dssp HHHTCCCEEEEEECSCTTHHHHHHHTTCC---HHHHEEECCGG--GCSSCEEEEC-----------------------CE
T ss_pred HhCCCCCcEEEEecccCCHHHHHHHhCCC---CCCCeEEECCC--CccCccEEEE-----------------------ec
Confidence 3456789999999997 889999998631 01111111110 0111111110 00
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC-----------------------
Q 004875 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL----------------------- 299 (726)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~----------------------- 299 (726)
... .......+.+.+.+........ .++++||||++++.++.+++.|...
T Consensus 291 ~~~------~~~~~~~~~~~~~~~~~v~~~~-~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1724)
T 4f92_B 291 ITE------KKAIKRFQIMNEIVYEKIMEHA-GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRT 363 (1724)
T ss_dssp ECC------CCHHHHHHHHHHHHHHHHTTCC-SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHH
T ss_pred cCC------cchhhhhHHHHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHh
Confidence 000 0000111122222222222222 2479999999999998888766310
Q ss_pred ------------CCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCc
Q 004875 300 ------------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKI 366 (726)
Q Consensus 300 ------------~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~ 366 (726)
.-..+|..+||+|+.++|..+++.|+.|. +|||||+++++|||+|++++||. ...+||+..+
T Consensus 364 ~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~----~~~~~~~~~~- 438 (1724)
T 4f92_B 364 EAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYSPEKG- 438 (1724)
T ss_dssp TTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE----CCEEEETTTT-
T ss_pred hhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEe----CCEEecCcCC-
Confidence 00235889999999999999999999999 99999999999999999999995 2344787654
Q ss_pred cccceEeecHHhHHHHcCCCCCC---CCceEEEeechhh---HhhccCCCCC-c-ccccChHHHHHHHhhhhcccCCChh
Q 004875 367 DSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSF---FGTLEDHECP-A-ILRLSLRLQVLLICCAESKAISDPK 438 (726)
Q Consensus 367 ~~l~~~~iS~a~~~QR~GRaGR~---~~G~~~~L~s~~~---~~~l~~~~~p-e-i~r~~L~~~iL~l~~~~~~~l~~~~ 438 (726)
...++|.+++.||+|||||. ..|.++.+.++.+ |..+.....| | -+...+...++....++ .+.+..
T Consensus 439 ---~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g--~i~~~~ 513 (1724)
T 4f92_B 439 ---RWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG--NVQNAK 513 (1724)
T ss_dssp ---EEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHT--SCCBHH
T ss_pred ---CcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHh--hcCCHH
Confidence 34678999999999999998 3799999988653 3344333322 1 11122333333211111 111111
Q ss_pred ---hhcc-------------------------cCCCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCC
Q 004875 439 ---VLLQ-------------------------KALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLS 490 (726)
Q Consensus 439 ---~~~~-------------------------~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~ 490 (726)
.++. +.++....+.+..|+..|.+.|.|..+..+|.+.+|++|+.|+++.++
T Consensus 514 ~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~ 593 (1724)
T 4f92_B 514 DAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYIT 593 (1724)
T ss_dssp HHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCC
T ss_pred HHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCC
Confidence 1110 112222235688999999999999653334778899999999999999
Q ss_pred hHHHHHHHhhcccCCH-HHHHHHHHHhccCCCcccCC
Q 004875 491 FDASVLVLKFGEIGML-REGILLGILMDTQPLPILHP 526 (726)
Q Consensus 491 p~~~~~l~~~~~~~c~-~e~l~i~a~ls~~~~~~~~p 526 (726)
|..++.+.......+. .+++.+.++.+......++.
T Consensus 594 ~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~ 630 (1724)
T 4f92_B 594 NDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVRE 630 (1724)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCH
Confidence 9999999887665554 45666666655433333343
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.1e-35 Score=327.79 Aligned_cols=321 Identities=17% Similarity=0.212 Sum_probs=223.7
Q ss_pred CcHHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHHHHhcC-----CCcEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 27 PVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~lle~~-----~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
.++++|.++++.+.++ +++++++|||||||.++...+++.. ..+++++.|++.++.++++++........+..
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 126 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 126 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccce
Confidence 5689999999999987 9999999999999988777766542 23788899999999999888776544333445
Q ss_pred eeeeeccccc---cCCCCeEEEEChHHHHHHHHh-cCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 100 VGYHIGHSKH---LSERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 100 Vgy~v~~~~~---~~~~~~Iiv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
+++.++.... .....+|+|+||++|++.+.. ..+.+.++++|||||||.......+...+.......+++.++++|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 206 (412)
T 3fht_A 127 LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 206 (412)
T ss_dssp EEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEE
T ss_pred EEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEE
Confidence 6655543322 234579999999999998865 444556999999999994332244544444444445678899999
Q ss_pred ccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccCh
Q 004875 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (726)
Q Consensus 176 SATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 255 (726)
|||++.............. ..+....... ...... ..+. ......
T Consensus 207 SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~-----------------------~~~~--------~~~~~~ 251 (412)
T 3fht_A 207 SATFEDSVWKFAQKVVPDP---NVIKLKREEE-TLDTIK-----------------------QYYV--------LCSSRD 251 (412)
T ss_dssp ESCCCHHHHHHHHHHSSSC---EEECCCGGGS-SCTTEE-----------------------EEEE--------ECSSHH
T ss_pred EeecCHHHHHHHHHhcCCC---eEEeeccccc-cccCce-----------------------EEEE--------EcCChH
Confidence 9999765333222221111 1111111000 000000 0000 000001
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEc
Q 004875 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (726)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaT 334 (726)
.....+.+++ .... .+++||||+++++++.+++.|... ++.+..+||+++.++|..+++.|++++ +|||||
T Consensus 252 ~~~~~l~~~~----~~~~--~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 323 (412)
T 3fht_A 252 EKFQALCNLY----GAIT--IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 323 (412)
T ss_dssp HHHHHHHHHH----HHHS--SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHH----hhcC--CCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc
Confidence 1112222222 2222 369999999999999999999854 578899999999999999999999988 999999
Q ss_pred ccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 335 niae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
+++++|||+|++++||+ ||.+..... +.|.++|.||+|||||. .+|.|+.++++.+
T Consensus 324 ~~~~~Gidip~~~~Vi~--------~~~p~~~~~----~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 324 NVCARGIDVEQVSVVIN--------FDLPVDKDG----NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp GGGTSSCCCTTEEEEEE--------SSCCBCSSS----SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CccccCCCccCCCEEEE--------ECCCCCCCC----CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 99999999999999999 777654321 34678889999999998 6799999998643
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1e-35 Score=326.01 Aligned_cols=319 Identities=20% Similarity=0.278 Sum_probs=224.5
Q ss_pred CcHHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 27 PVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
.++++|.++++.+.++ +++++++|||||||+++..++++. ...+++++.|++.++.+.++.+.... ...+..
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~ 105 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG-KFTKIT 105 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh-cccCee
Confidence 5689999999999988 999999999999998888777764 23478889999988999888876543 222333
Q ss_pred eeeeecc--ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 100 VGYHIGH--SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 100 Vgy~v~~--~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
++...+. ......+.+|+|+||+.|++.+......+.++++|||||||+...+.++...+.+.....+++.++++|||
T Consensus 106 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 185 (395)
T 3pey_A 106 SQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSA 185 (395)
T ss_dssp EEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEES
T ss_pred EEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEe
Confidence 3333222 22234468999999999999988776667799999999999544335555555555555567899999999
Q ss_pred CCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhH
Q 004875 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (726)
Q Consensus 178 Tl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (726)
|++.. +..+....... .......... .. .......+. ........
T Consensus 186 T~~~~-~~~~~~~~~~~--~~~~~~~~~~----~~--------------------~~~~~~~~~--------~~~~~~~~ 230 (395)
T 3pey_A 186 TFADA-VRQYAKKIVPN--ANTLELQTNE----VN--------------------VDAIKQLYM--------DCKNEADK 230 (395)
T ss_dssp CCCHH-HHHHHHHHSCS--CEEECCCGGG----CS--------------------CTTEEEEEE--------ECSSHHHH
T ss_pred cCCHH-HHHHHHHhCCC--CeEEEccccc----cc--------------------cccccEEEE--------EcCchHHH
Confidence 99754 22232221110 1111111000 00 000000000 00000011
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
...+..+..... .+++||||+++++++.+++.|+.. ++.+..+||+++.++|..+++.|+++. +|||||++
T Consensus 231 ----~~~l~~~~~~~~--~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 302 (395)
T 3pey_A 231 ----FDVLTELYGLMT--IGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV 302 (395)
T ss_dssp ----HHHHHHHHTTTT--SSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG
T ss_pred ----HHHHHHHHHhcc--CCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh
Confidence 122333333322 379999999999999999999854 478999999999999999999999988 99999999
Q ss_pred ccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 337 ae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
+++|||+|++++||+ ||.+.. ...+.|..++.||+|||||. .+|.|+.++++.
T Consensus 303 ~~~Gidip~~~~Vi~--------~~~p~~----~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 303 LARGIDIPTVSMVVN--------YDLPTL----ANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp GSSSCCCTTEEEEEE--------SSCCBC----TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred hhcCCCcccCCEEEE--------cCCCCC----CcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 999999999999999 777652 22346888999999999999 679999999864
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=325.53 Aligned_cols=313 Identities=18% Similarity=0.208 Sum_probs=214.9
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----C-------------------CCcEEEecchHHHHHH
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N-------------------MEPILCTQPRRFAVVA 83 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~-------------------~~~Iivt~Prrlaa~~ 83 (726)
.++++|.++++.+.+++++++++|||||||+.+..++++. . ..+++++.|++.++.+
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 5689999999999999999999999999997665554432 1 1358888899888888
Q ss_pred HHHHHHhhcCCccCCeeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHH
Q 004875 84 VAKMVAKGRNCELGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL 157 (726)
Q Consensus 84 ~a~~va~~~~~~lg~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll 157 (726)
+++++..... ..+..++...+.. .....+++|+|+||+.|++.+..+.+.+.++++||||||| +..+.++..
T Consensus 117 ~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah-~~~~~~~~~ 194 (417)
T 2i4i_A 117 IYEEARKFSY-RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEAD-RMLDMGFEP 194 (417)
T ss_dssp HHHHHHHHHT-TSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHH-HHHHTTCHH
T ss_pred HHHHHHHHhC-cCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChh-HhhccCcHH
Confidence 8888765432 2222233222221 1224568999999999999998876667799999999999 555555444
Q ss_pred HHHHHHHhc-----CCCceEEEeccCCCHHHHHHHHhh-cCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCC
Q 004875 158 VCVKQLLLK-----KNDLRVVLMSATADITKYRDYFRD-LGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGM 231 (726)
Q Consensus 158 ~~lk~l~~~-----~~~lklIlmSATl~~~~~~~~f~~-~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 231 (726)
.+ +.++.. ....++++||||++.+.. .+... +... . ...+..... ..-.+.
T Consensus 195 ~~-~~i~~~~~~~~~~~~~~i~~SAT~~~~~~-~~~~~~~~~~--~-~~~~~~~~~-~~~~i~----------------- 251 (417)
T 2i4i_A 195 QI-RRIVEQDTMPPKGVRHTMMFSATFPKEIQ-MLARDFLDEY--I-FLAVGRVGS-TSENIT----------------- 251 (417)
T ss_dssp HH-HHHHTSSSCCCBTTBEEEEEESCCCHHHH-HHHHHHCSSC--E-EEEEC-----CCSSEE-----------------
T ss_pred HH-HHHHHhccCCCcCCcEEEEEEEeCCHHHH-HHHHHHcCCC--E-EEEeCCCCC-CccCce-----------------
Confidence 43 333331 126789999999975422 22211 1111 1 111111000 000000
Q ss_pred ccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCC
Q 004875 232 TSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS 311 (726)
Q Consensus 232 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~ 311 (726)
..+.... ....... +..+..... .++++||||+++++++.+++.|... ++.+..+||+
T Consensus 252 ------~~~~~~~---------~~~~~~~----l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~ 309 (417)
T 2i4i_A 252 ------QKVVWVE---------ESDKRSF----LLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGD 309 (417)
T ss_dssp ------EEEEECC---------GGGHHHH----HHHHHHTCC-TTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT
T ss_pred ------EEEEEec---------cHhHHHH----HHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCC
Confidence 0000000 0011112 222222222 2478999999999999999999854 5889999999
Q ss_pred CCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-
Q 004875 312 VDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT- 389 (726)
Q Consensus 312 l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~- 389 (726)
++.++|..+++.|++++ +|||||+++++|||+|++++||+ ||++. |..+|.||+|||||.
T Consensus 310 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 310 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FDLPS----------DIEEYVHRIGRTGRVG 371 (417)
T ss_dssp SCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SSCCS----------SHHHHHHHHTTBCC--
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------EcCCC----------CHHHHHHhcCccccCC
Confidence 99999999999999888 99999999999999999999999 88876 455669999999999
Q ss_pred CCceEEEeechhhHh
Q 004875 390 CDGQVYRLVTKSFFG 404 (726)
Q Consensus 390 ~~G~~~~L~s~~~~~ 404 (726)
.+|.||.+|++.+..
T Consensus 372 ~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 372 NLGLATSFFNERNIN 386 (417)
T ss_dssp CCEEEEEEECGGGGG
T ss_pred CCceEEEEEccccHH
Confidence 679999999987654
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.3e-36 Score=329.77 Aligned_cols=314 Identities=18% Similarity=0.246 Sum_probs=223.5
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
++++|.++++.+.+++++++++|||||||.++...+++. ...+++++.|++.++.++++.+... +...+..++.
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~ 138 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL-GDYMNVQCHA 138 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH-TTTTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH-hccCCeEEEE
Confidence 678999999999999999999999999998888777754 2347888889998888888877653 3233444444
Q ss_pred eecccc------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 103 HIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 103 ~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++... ....+.+|+|+||+.|.+.+....+.+.++++||||||| +..+.++...+.+.+...+++.++++||
T Consensus 139 ~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 139 CIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD-EMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp ECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred EECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHH-HHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 333221 122457999999999999998876667799999999999 5666666655555554556789999999
Q ss_pred cCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChh
Q 004875 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (726)
Q Consensus 177 ATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (726)
||++.+.. ++..... ..+..+. +... ...... ....+.. ......
T Consensus 218 AT~~~~~~-~~~~~~~-~~~~~~~-~~~~-~~~~~~-----------------------~~~~~~~--------~~~~~~ 262 (410)
T 2j0s_A 218 ATLPHEIL-EMTNKFM-TDPIRIL-VKRD-ELTLEG-----------------------IKQFFVA--------VEREEW 262 (410)
T ss_dssp SCCCHHHH-TTGGGTC-SSCEEEC-CCGG-GCSCTT-----------------------EEEEEEE--------ESSTTH
T ss_pred cCCCHHHH-HHHHHHc-CCCEEEE-ecCc-cccCCC-----------------------ceEEEEE--------eCcHHh
Confidence 99976432 2222111 1111111 1000 000000 0000000 000011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc
Q 004875 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (726)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn 335 (726)
..+.+.+++.. .. .+++||||+++++++.+++.|... ++.+..+||+++.++|..+++.|+++. +|||||+
T Consensus 263 k~~~l~~~~~~----~~--~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 263 KFDTLCDLYDT----LT--ITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp HHHHHHHHHHH----HT--SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred HHHHHHHHHHh----cC--CCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 12222232222 12 258999999999999999999854 578999999999999999999999888 9999999
Q ss_pred cccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 336 iae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
++++|+|+|++++||+ ||++. |..+|.||+||+||. ++|.|+.++++.+..
T Consensus 335 ~~~~Gidi~~v~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 335 VWARGLDVPQVSLIIN--------YDLPN----------NRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp GGSSSCCCTTEEEEEE--------SSCCS----------SHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred hhhCcCCcccCCEEEE--------ECCCC----------CHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 9999999999999999 88876 455669999999999 789999999987654
No 15
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-35 Score=373.28 Aligned_cols=439 Identities=14% Similarity=0.123 Sum_probs=286.3
Q ss_pred cHHHHHHHHHHHH-cCCcEEEEcCCCChHhHHHHHHHH----hcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~-~~~~vii~a~TGSGKTt~ip~~ll----e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
.+++|.++++.+. .+++++|+||||||||+.+...++ +...++++++.|.+.++.+.++.+.+.++..+|..|+.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 4789999999996 567899999999999976555543 44456899999999999999999988887777777776
Q ss_pred eecccc---ccCCCCeEEEEChHHHHHHHHhcC--CCCCceeEEEEccccccccc-----ccHHHHHHHHHH-hcCCCce
Q 004875 103 HIGHSK---HLSERSKIVFKTAGVLLDEMRDRG--LNALKYKVIILDEVHERSVE-----SDLVLVCVKQLL-LKKNDLR 171 (726)
Q Consensus 103 ~v~~~~---~~~~~~~Iiv~T~g~Ll~~l~~~~--l~l~~~~~VIIDEaHeR~~~-----~d~ll~~lk~l~-~~~~~lk 171 (726)
..+... ....+++|+|||||++...+.... ..+.++++|||||+|. ..+ .+.++..++.+. ...+++|
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~-l~d~rg~~le~il~rl~~i~~~~~~~~r 1085 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL-IGGENGPVLEVICSRMRYISSQIERPIR 1085 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG-GGSTTHHHHHHHHHHHHHHHHTTSSCCE
T ss_pred EECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh-cCCCCCccHHHHHHHHHHHHhhcCCCce
Confidence 654321 123468999999999876654321 1234899999999993 222 122223333333 2356799
Q ss_pred EEEeccCC-CHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 004875 172 VVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (726)
Q Consensus 172 lIlmSATl-~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 250 (726)
+|+||||+ |++.+++|++.-. ..+...... .+..+.+.+. .+ + ....
T Consensus 1086 iI~lSATl~N~~dla~WL~~~~----~~~~~~~~~--~RPvpL~~~i-------~~-------------~---~~~~--- 1133 (1724)
T 4f92_B 1086 IVALSSSLSNAKDVAHWLGCSA----TSTFNFHPN--VRPVPLELHI-------QG-------------F---NISH--- 1133 (1724)
T ss_dssp EEEEESCBTTHHHHHHHHTCCS----TTEEECCGG--GCSSCEEEEE-------EE-------------E---CCCS---
T ss_pred EEEEeCCCCCHHHHHHHhCCCC----CCeEEeCCC--CCCCCeEEEE-------Ee-------------c---cCCC---
Confidence 99999997 8999999997421 111111110 0111111100 00 0 0000
Q ss_pred cccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC------C------------------------
Q 004875 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL------S------------------------ 300 (726)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~------~------------------------ 300 (726)
...........+...+....+ ++++||||+++..++.++..|... .
T Consensus 1134 --~~~~~~~~~~~~~~~i~~~~~--~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~ 1209 (1724)
T 4f92_B 1134 --TQTRLLSMAKPVYHAITKHSP--KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK 1209 (1724)
T ss_dssp --HHHHHHTTHHHHHHHHHHHCS--SSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHH
T ss_pred --chhhhhhhcchHHHHHHHhcC--CCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHH
Confidence 000000011112222222332 379999999999999887665210 0
Q ss_pred --CCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHH
Q 004875 301 --SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQS 377 (726)
Q Consensus 301 --~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a 377 (726)
-..+|..+||+|++++|..+++.|++|. +|||||+++++|||+|++.+||.+ ..+||... ....+.|..
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~----~~~~~~s~~ 1281 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKI----HAYVDYPIY 1281 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTT----TEEEECCHH
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCcc----cccCCCCHH
Confidence 0135899999999999999999999999 999999999999999999999962 22366543 234677999
Q ss_pred hHHHHcCCCCCCC---CceEEEeechhh---HhhccCCCCCcccccChH----HHHHHHhhhhcccCCCh---hhhcc-c
Q 004875 378 QAEQRRGRTGRTC---DGQVYRLVTKSF---FGTLEDHECPAILRLSLR----LQVLLICCAESKAISDP---KVLLQ-K 443 (726)
Q Consensus 378 ~~~QR~GRaGR~~---~G~~~~L~s~~~---~~~l~~~~~pei~r~~L~----~~iL~l~~~~~~~l~~~---~~~~~-~ 443 (726)
++.||+|||||.+ .|.|+.++.+.+ |..+.. .|+-+++.|. ..++..... ..+.+. .+++. .
T Consensus 1282 ~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~--~~~pveS~L~~~l~~~l~~eI~~--~~i~~~~d~~~~l~~T 1357 (1724)
T 4f92_B 1282 DVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY--EPLPVESHLDHCMHDHFNAEIVT--KTIENKQDAVDYLTWT 1357 (1724)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT--SCBCCCCCGGGSCHHHHHHHHHT--TSCCBHHHHHHHHTTS
T ss_pred HHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhC--CCCceeeecccchHHHHHHHHHh--cccCCHHHHHHHHHhh
Confidence 9999999999983 799999988653 334432 3344555543 333322111 112211 11111 0
Q ss_pred C-------------CCC--------CCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhcc
Q 004875 444 A-------------LDP--------PYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502 (726)
Q Consensus 444 ~-------------l~p--------P~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~ 502 (726)
| +.. ...+.+.++++.|.+.|+|.. ++++.+.+|++|+.++.++++|..++++..+..
T Consensus 1358 fl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~-~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1436 (1724)
T 4f92_B 1358 FLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISI-EDEMDVAPLNLGMIAAYYYINYTTIELFSMSLN 1436 (1724)
T ss_dssp SHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEE-ETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCC
T ss_pred HHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEE-cCCCCEeecHHHHHHHHHCCCHHHHHHHHHhcc
Confidence 0 111 123457889999999999975 334667789999999999999999999988776
Q ss_pred cCCH-HHHHHHHHHh
Q 004875 503 IGML-REGILLGILM 516 (726)
Q Consensus 503 ~~c~-~e~l~i~a~l 516 (726)
.++. .+++.+.+..
T Consensus 1437 ~~~~~~~~L~il~~a 1451 (1724)
T 4f92_B 1437 AKTKVRGLIEIISNA 1451 (1724)
T ss_dssp TTCCHHHHHHHHHTS
T ss_pred ccCCHHHHHHHhcCC
Confidence 6664 4455555543
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.7e-35 Score=317.36 Aligned_cols=310 Identities=20% Similarity=0.267 Sum_probs=223.3
Q ss_pred CcHHHHHHHHHHHHcC-CcEEEEcCCCChHhHHHHHHHHhc----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 27 PVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~-~~vii~a~TGSGKTt~ip~~lle~----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.++++|.++++.+.++ +++++.+|||||||+++..++++. ...+++++.|++.++.+.++.+....+.. +..++
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~ 106 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNK-NLKIA 106 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CCCEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCC-CceEE
Confidence 4689999999999888 799999999999998887777654 23478888899999999998888765432 22233
Q ss_pred eeecccc-----ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 102 YHIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 102 y~v~~~~-----~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
...+... ......+|+|+||+.|.+.+..+...+.++++||||||| +..+.++...+.+.+...+++.++++||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah-~~~~~~~~~~~~~~~~~~~~~~~~i~~S 185 (367)
T 1hv8_A 107 KIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD-EMLNMGFIKDVEKILNACNKDKRILLFS 185 (367)
T ss_dssp EECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH-HHHTTTTHHHHHHHHHTSCSSCEEEEEC
T ss_pred EEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch-HhhhhchHHHHHHHHHhCCCCceEEEEe
Confidence 2222211 111368999999999999988776667799999999999 4555556555555555556789999999
Q ss_pred cCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChh
Q 004875 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (726)
Q Consensus 177 ATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (726)
||++.+.........+. .......... .+...| ... . ...
T Consensus 186 AT~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~-----------------------~~~--------~-~~~ 225 (367)
T 1hv8_A 186 ATMPREILNLAKKYMGD---YSFIKAKINA-----NIEQSY-----------------------VEV--------N-ENE 225 (367)
T ss_dssp SSCCHHHHHHHHHHCCS---EEEEECCSSS-----SSEEEE-----------------------EEC--------C-GGG
T ss_pred eccCHHHHHHHHHHcCC---CeEEEecCCC-----CceEEE-----------------------EEe--------C-hHH
Confidence 99986644332222111 1121111110 000000 000 0 001
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc
Q 004875 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (726)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn 335 (726)
..+ .+...+ . ..++++||||+++++++.+++.|+.. ++.+..+||+++.++|..+++.|++++ +|||||+
T Consensus 226 ~~~---~l~~~l-~---~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 226 RFE---ALCRLL-K---NKEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp HHH---HHHHHH-C---STTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred HHH---HHHHHH-h---cCCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 111 222222 2 22468999999999999999999854 578999999999999999999999888 9999999
Q ss_pred cccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHhh
Q 004875 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (726)
Q Consensus 336 iae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~~ 405 (726)
++++|+|+|++++||+ |+++. |..++.||+|||||. .+|.|+.++++.++..
T Consensus 297 ~~~~Gid~~~~~~Vi~--------~~~~~----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 297 VMSRGIDVNDLNCVIN--------YHLPQ----------NPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp THHHHCCCSCCSEEEE--------SSCCS----------CHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred hhhcCCCcccCCEEEE--------ecCCC----------CHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 9999999999999999 77765 556669999999999 6899999999876643
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.4e-34 Score=316.98 Aligned_cols=314 Identities=17% Similarity=0.197 Sum_probs=219.3
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
++++|.++++.+.+++++++++|||+|||.++...+++. ...+++++.|++.++.++++.+........+..++.
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 110 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 110 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 789999999999999999999999999998777766654 234788888998888888887776543222333443
Q ss_pred eeccccc-------cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 103 HIGHSKH-------LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 103 ~v~~~~~-------~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
..+.... ....++|+|+||++|.+.+......+.++++|||||||...-..++...+.+.+....++.++++|
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 190 (391)
T 1xti_A 111 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 190 (391)
T ss_dssp ECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEE
T ss_pred EeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEE
Confidence 3332211 123479999999999998887766677999999999995333345555554444445568899999
Q ss_pred ccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccCh
Q 004875 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (726)
Q Consensus 176 SATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 255 (726)
|||++..........+.. +..+ ................ +... ...
T Consensus 191 SAT~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~-----------------------~~~~---------~~~ 235 (391)
T 1xti_A 191 SATLSKEIRPVCRKFMQD--PMEI-FVDDETKLTLHGLQQY-----------------------YVKL---------KDN 235 (391)
T ss_dssp ESSCCSTHHHHHHHHCSS--CEEE-ECCCCCCCCCTTCEEE-----------------------EEEC---------CGG
T ss_pred EeeCCHHHHHHHHHHcCC--CeEE-EecCccccCcccceEE-----------------------EEEc---------Cch
Confidence 999865422211111111 1111 1111100000000000 0000 001
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEc
Q 004875 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (726)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaT 334 (726)
.....+.+++ .... .+++||||+++++++.+++.|... ++.+..+||+++.++|..+++.|+++. +|||||
T Consensus 236 ~~~~~l~~~l----~~~~--~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T 307 (391)
T 1xti_A 236 EKNRKLFDLL----DVLE--FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 307 (391)
T ss_dssp GHHHHHHHHH----HHSC--CSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES
T ss_pred hHHHHHHHHH----HhcC--CCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC
Confidence 1112222222 2222 379999999999999999999854 578999999999999999999999888 999999
Q ss_pred ccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 335 niae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
+++++|+|+|++++||+ ||++. |..++.||+|||||. .+|.|+.++++.+
T Consensus 308 ~~~~~Gidi~~~~~Vi~--------~~~p~----------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 308 NLFGRGMDIERVNIAFN--------YDMPE----------DSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp CCCSSCBCCTTEEEEEE--------SSCCS----------SHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred ChhhcCCCcccCCEEEE--------eCCCC----------CHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 99999999999999999 88776 555669999999999 7899999998653
No 18
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.2e-35 Score=354.28 Aligned_cols=352 Identities=16% Similarity=0.191 Sum_probs=233.3
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHH--HHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~--ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
++++++|.++++.+.++++++++||||||||+. ++.........+++++.|++.++.++++++...++ +..+|..
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~l 114 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIGLI 114 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCeEEEE
Confidence 567999999999999999999999999999954 44433334446788999999999999999988653 3345544
Q ss_pred eccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC-CHH
Q 004875 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DIT 182 (726)
Q Consensus 104 v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl-~~~ 182 (726)
.+ +......++|+|+||++|++.+......+.++++||||||| +..+.++...+.+.+...+++.++|+||||+ +..
T Consensus 115 ~G-~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~ 192 (997)
T 4a4z_A 115 TG-DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY 192 (997)
T ss_dssp CS-SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH
T ss_pred eC-CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCCCCChH
Confidence 33 33345678999999999999988776566799999999999 6767666655555666667889999999997 888
Q ss_pred HHHHHHhhcCCCcceeEEEecCCCccc---------eeec---eehhHHH----HHHHhccCCCCccccc----c--c--
Q 004875 183 KYRDYFRDLGRGERVEVLAIPSTNQRT---------IFQR---RVSYLEQ----VTELLGVDHGMTSELS----S--L-- 238 (726)
Q Consensus 183 ~~~~~f~~~~~~~~~~v~~~~~~~~~~---------~~~~---~~~yl~~----~~~~~~~~~~~~~~~~----~--~-- 238 (726)
.|.+|++.... ..+.++..+.++... .++. ...+.+. ..+.+........... . .
T Consensus 193 ef~~~l~~~~~-~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (997)
T 4a4z_A 193 EFANWIGRTKQ-KNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTA 271 (997)
T ss_dssp HHHHHHHHHHT-CCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------------
T ss_pred HHHHHHhcccC-CceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccc
Confidence 99999975321 123333333321110 0000 0001100 0000000000000000 0 0
Q ss_pred ccc-----------------------------CCCCCC----ccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCc
Q 004875 239 RYC-----------------------------SGPSPS----MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPT 285 (726)
Q Consensus 239 ~y~-----------------------------~~~~~~----~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~ 285 (726)
... ...... +....... ..+..++..+.... .+++|||+++
T Consensus 272 ~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~l~~~~---~~~~IVF~~s 345 (997)
T 4a4z_A 272 RGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSK---KTWPEIVNYLRKRE---LLPMVVFVFS 345 (997)
T ss_dssp ---------------------------------------------CCCCT---THHHHHHHHHHHTT---CCSEEEECSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccch---hHHHHHHHHHHhCC---CCCEEEEECC
Confidence 000 000000 00000001 12233444444332 3699999999
Q ss_pred HHHHHHHHHHhcCCCC-------------------------------------CcEEEEecCCCCHHHHHHHhhccCCCc
Q 004875 286 YYALEQQWHLMKPLSS-------------------------------------FFKVHILHSSVDTEQALMAMKICKSHR 328 (726)
Q Consensus 286 ~~~i~~l~~~L~~~~~-------------------------------------~~~v~~lh~~l~~~er~~~~~~f~~~r 328 (726)
+.+++.++..|...+- ...+..+||+|++.+|..+++.|+.|.
T Consensus 346 r~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~ 425 (997)
T 4a4z_A 346 KKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF 425 (997)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC
Confidence 9999999999975332 115889999999999999999999998
Q ss_pred -EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCC---CceEEEeec
Q 004875 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVT 399 (726)
Q Consensus 329 -kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s 399 (726)
+|||||+++++|||+|++. ||..+..+ ||.. ...|+|.++|.||+|||||.+ .|.||.++.
T Consensus 426 ~kVLvAT~~~a~GIDiP~~~-VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 426 IKVLFATETFAMGLNLPTRT-VIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp CSEEEECTHHHHSCCCCCSE-EEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred CcEEEEchHhhCCCCCCCce-EEEecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 9999999999999999955 45445444 4433 345889999999999999974 899999984
No 19
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-34 Score=343.70 Aligned_cols=351 Identities=16% Similarity=0.194 Sum_probs=232.8
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh--cCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle--~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
+.++++|.++++.+.++++++|+||||||||+.+...++. ....+++++.|++.++.+.++.+...++ .||..
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vgll 159 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVGLM 159 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS-----CEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC-----CEEEE
Confidence 5589999999999999999999999999999765544443 2346888999999999999999888765 35554
Q ss_pred eccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC-CHH
Q 004875 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DIT 182 (726)
Q Consensus 104 v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl-~~~ 182 (726)
.+ +......++|+|+||++|.+.+..+...+.++++||||||| +..+.+....+-..+...+++.++|+||||+ +..
T Consensus 160 tG-d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH-~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~ 237 (1010)
T 2xgj_A 160 TG-DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAM 237 (1010)
T ss_dssp CS-SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG-GGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHH
T ss_pred eC-CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh-hhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHH
Confidence 33 33345678999999999999888766667799999999999 5555444333333344456789999999998 677
Q ss_pred HHHHHHhhcCCCcceeEEEecCCCccceeeceehhHH-------------------HHHHHhccCCCCccccccccccCC
Q 004875 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLE-------------------QVTELLGVDHGMTSELSSLRYCSG 243 (726)
Q Consensus 183 ~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~-------------------~~~~~~~~~~~~~~~~~~~~y~~~ 243 (726)
.+.+|+.... ..++.++..+.++. +...++.. ....................-..+
T Consensus 238 e~a~~l~~~~-~~~~~vi~~~~rp~----pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 312 (1010)
T 2xgj_A 238 EFAEWICKIH-SQPCHIVYTNFRPT----PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRG 312 (1010)
T ss_dssp HHHHHHHHHH-TSCEEEEEECCCSS----CEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--------------
T ss_pred HHHHHHHhhc-CCCeEEEecCCCcc----cceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccc
Confidence 8899987432 11233443333221 11111100 000000000000000000000000
Q ss_pred CCCCcccccc-ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCC--------------------
Q 004875 244 PSPSMANAEI-KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF-------------------- 302 (726)
Q Consensus 244 ~~~~~~~~~~-~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~-------------------- 302 (726)
.......... .......+..++..+.... .+++|||++++..++.++..|...+..
T Consensus 313 ~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~---~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 389 (1010)
T 2xgj_A 313 KKGQTYKGGSAKGDAKGDIYKIVKMIWKKK---YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLP 389 (1010)
T ss_dssp ----------------CHHHHHHHHHHHHT---CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSC
T ss_pred ccccccccccccccchHHHHHHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcc
Confidence 0000000000 0000112233444444332 258999999999999999998753210
Q ss_pred -----------------cEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCC
Q 004875 303 -----------------FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (726)
Q Consensus 303 -----------------~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~ 364 (726)
..+..+||+|++.+|..+++.|+.|. +|||||+++++|||+|++++||+. ...||...
T Consensus 390 ~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~ 465 (1010)
T 2xgj_A 390 ETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ 465 (1010)
T ss_dssp GGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC
T ss_pred hhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC
Confidence 13889999999999999999999988 999999999999999999999973 22366542
Q ss_pred CccccceEeecHHhHHHHcCCCCCCC---CceEEEeechh
Q 004875 365 KIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKS 401 (726)
Q Consensus 365 ~~~~l~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~ 401 (726)
..|+|.++|.||+|||||.+ .|.||.++++.
T Consensus 466 ------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 466 ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp ------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred ------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 46889999999999999995 59999999854
No 20
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.2e-36 Score=338.56 Aligned_cols=289 Identities=15% Similarity=0.170 Sum_probs=204.3
Q ss_pred HHHHHcCCcEEEEcCCCChHhHHHHHHHHhc---CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecccc-ccC
Q 004875 36 VEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSK-HLS 111 (726)
Q Consensus 36 l~~i~~~~~vii~a~TGSGKTt~ip~~lle~---~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~-~~~ 111 (726)
.+.+.++++++++||||||||+++...+++. ...+++++.|++.++.++++++. |..+++..+... ...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~~t 87 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQREHQ 87 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC--------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccCCC
Confidence 4456788999999999999998766665542 33578888899999999888764 334554433221 224
Q ss_pred CCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHHHHHHHHhhc
Q 004875 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDL 191 (726)
Q Consensus 112 ~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~~~ 191 (726)
+...+.++|.+.+.+.+.... .+.++++|||||||++....++..++++.... .++.++|+||||++.+. ..+.
T Consensus 88 ~~~~i~~~~~~~l~~~l~~~~-~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~--- 161 (459)
T 2z83_A 88 GNEIVDVMCHATLTHRLMSPN-RVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFP--- 161 (459)
T ss_dssp CCCSEEEEEHHHHHHHHHSCC--CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSC---
T ss_pred CCcEEEEEchHHHHHHhhccc-cccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhc---
Confidence 567789999999998887753 46699999999999887777777777776553 46899999999987431 0000
Q ss_pred CCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhh
Q 004875 192 GRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKN 271 (726)
Q Consensus 192 ~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~ 271 (726)
... .++..+... ++ ..... .. . +.+ ..
T Consensus 162 ~~~--~pi~~~~~~-----~~--------------------------------~~~~~--~~----~----~~l---~~- 188 (459)
T 2z83_A 162 DSN--APIHDLQDE-----IP--------------------------------DRAWS--SG----Y----EWI---TE- 188 (459)
T ss_dssp CCS--SCEEEEECC-----CC--------------------------------SSCCS--SC----C----HHH---HH-
T ss_pred cCC--CCeEEeccc-----CC--------------------------------cchhH--HH----H----HHH---Hh-
Confidence 001 111111000 00 00000 00 0 111 11
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEE
Q 004875 272 ESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVI 350 (726)
Q Consensus 272 ~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VI 350 (726)
. .+++||||+++++++.+++.|+.. ++.+..+||. +|..+++.|++|. +||||||++++|||+|+ ++||
T Consensus 189 ~---~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI 258 (459)
T 2z83_A 189 Y---AGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVI 258 (459)
T ss_dssp C---CSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEE
T ss_pred c---CCCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEE
Confidence 1 379999999999999999999854 5889999994 6777889999988 99999999999999999 9999
Q ss_pred eCCCceeeeecCCCCccccce---EeecHHhHHHHcCCCCCCC--CceEEEeechh
Q 004875 351 DSCRSLQVFWDVNRKIDSAEL---VWVSQSQAEQRRGRTGRTC--DGQVYRLVTKS 401 (726)
Q Consensus 351 d~G~~k~~~yd~~~~~~~l~~---~~iS~a~~~QR~GRaGR~~--~G~~~~L~s~~ 401 (726)
|+|+.+.+.|+. .+.+.+.. .|.|+++|.||+|||||.+ +|.||.++++.
T Consensus 259 ~~G~~~~~~~~~-~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 259 DCRKSVKPTILE-EGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCEECCEEEEC-SSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECCccccccccc-ccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999888777663 33444444 8999999999999999994 89999999875
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=334.88 Aligned_cols=319 Identities=18% Similarity=0.214 Sum_probs=118.0
Q ss_pred cHHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHHHHhcCC-----CcEEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 28 i~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~lle~~~-----~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
++++|.++++.+.++ ++++++||||||||.++...+++... .+++++.|++.++.++++.+........+..+
T Consensus 115 p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 194 (479)
T 3fmp_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 194 (479)
T ss_dssp CCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCE
T ss_pred CCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceE
Confidence 456699999999986 99999999999999888887775432 27888999999999988877665433233445
Q ss_pred eeeecccc---ccCCCCeEEEEChHHHHHHHHh-cCCCCCceeEEEEccccccccc-ccHHHHHHHHHHhcCCCceEEEe
Q 004875 101 GYHIGHSK---HLSERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 101 gy~v~~~~---~~~~~~~Iiv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHeR~~~-~d~ll~~lk~l~~~~~~lklIlm 175 (726)
++.++... ......+|+|+||+.|++.+.. ..+.+.++++|||||||+ ..+ ..+...........+++.++|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~-~~~~~~~~~~~~~i~~~~~~~~~~i~~ 273 (479)
T 3fmp_B 195 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MIATQGHQDQSIRIQRMLPRNCQMLLF 273 (479)
T ss_dssp EEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH-HHTSTTHHHHHHHHHTTSCTTSEEEEE
T ss_pred EEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH-HhhcCCcHHHHHHHHhhCCccceEEEE
Confidence 55544332 2234578999999999999865 345556999999999994 444 34544444444445668999999
Q ss_pred ccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccCh
Q 004875 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (726)
Q Consensus 176 SATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 255 (726)
|||++.+.....-..+.. ...+.+..... ........|+ ..... .
T Consensus 274 SAT~~~~~~~~~~~~~~~---~~~i~~~~~~~-~~~~~~~~~~-----------------------~~~~~--------~ 318 (479)
T 3fmp_B 274 SATFEDSVWKFAQKVVPD---PNVIKLKREEE-TLDTIKQYYV-----------------------LCSSR--------D 318 (479)
T ss_dssp ESCCCHHHHHHHHHHSSS---EEEEEEC----------------------------------------------------
T ss_pred eCCCCHHHHHHHHHHcCC---CeEEecccccc-CcCCceEEEE-----------------------EeCCH--------H
Confidence 999986533222221111 11222211100 0000000000 00000 0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEc
Q 004875 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (726)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaT 334 (726)
... ..+..+..... .+++||||+++.+++.+++.|... ++.+..+||++++.+|..+++.|++|+ +|||||
T Consensus 319 ~~~----~~l~~~~~~~~--~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T 390 (479)
T 3fmp_B 319 EKF----QALCNLYGAIT--IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH----HHHHHHHhhcc--CCceEEEeCcHHHHHHHHHHHHhC--CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 000 11111221111 368999999999999999999854 578999999999999999999999998 999999
Q ss_pred ccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 335 niae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
+++++|||+|++++||+ ||.+..... +.|..+|.||+|||||. .+|.|+.++++.+
T Consensus 391 ~~~~~GlDip~v~~VI~--------~d~p~~~~~----~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 391 NVCARGIDVEQVSVVIN--------FDLPVDKDG----NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccCCccccCCEEEE--------ecCCCCCcc----CCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 99999999999999999 887753321 33556779999999998 6799999998654
No 22
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.6e-35 Score=327.32 Aligned_cols=288 Identities=17% Similarity=0.193 Sum_probs=205.4
Q ss_pred HHHHHHcCC-cEEEEcCCCChHhHHHHHHHHh---cCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecccc-c
Q 004875 35 IVEKVLENR-VTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSK-H 109 (726)
Q Consensus 35 il~~i~~~~-~vii~a~TGSGKTt~ip~~lle---~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~-~ 109 (726)
+++.+.+++ +++++||||||||+++...+++ ....+++++.|++.++.++++.+. |..++|..+... .
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~ 83 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKSD 83 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSCC
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc-------Cceeeeeecccccc
Confidence 445555554 5599999999999764444332 233578888899998888887652 345666654432 3
Q ss_pred cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHHHHHHHHh
Q 004875 110 LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 110 ~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~ 189 (726)
...++.|.++|+|.+.+.+.... .+.++++|||||||++....+....++... ...++.++|+||||++.+....++.
T Consensus 84 ~~~~~~i~~~t~~~l~~~l~~~~-~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~ 161 (451)
T 2jlq_A 84 HTGREIVDLMCHATFTTRLLSST-RVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQS 161 (451)
T ss_dssp CCSSCCEEEEEHHHHHHHHHHCS-CCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCC
T ss_pred CCCCceEEEEChHHHHHHhhCcc-cccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcC
Confidence 35567899999999999887653 466999999999997655555555554332 2356899999999987532222111
Q ss_pred hcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHH
Q 004875 190 DLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIH 269 (726)
Q Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~ 269 (726)
. ..++.... .++.. .| . .. . +.+ .
T Consensus 162 ~------~~~~~~~~-----~~p~~------------------------~~--------~--~~----~----~~l---~ 185 (451)
T 2jlq_A 162 N------SPIEDIER-----EIPER------------------------SW--------N--TG----F----DWI---T 185 (451)
T ss_dssp S------SCEEEEEC-----CCCSS------------------------CC--------S--SS----C----HHH---H
T ss_pred C------CceEecCc-----cCCch------------------------hh--------H--HH----H----HHH---H
Confidence 1 11111110 00000 00 0 00 0 111 1
Q ss_pred hhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeE
Q 004875 270 KNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAY 348 (726)
Q Consensus 270 ~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~ 348 (726)
. . .+++||||+++++++.+++.|+.. ++.+..+||.+. .++++.|++|+ +|||||+++|+|||+|+ ++
T Consensus 186 ~-~---~~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~ 254 (451)
T 2jlq_A 186 D-Y---QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GR 254 (451)
T ss_dssp H-C---CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SE
T ss_pred h-C---CCCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CE
Confidence 1 1 369999999999999999999854 578899999754 46789999988 99999999999999999 99
Q ss_pred EEeCCCceeeeecCCCCccccce---EeecHHhHHHHcCCCCCCC--CceEEEeec
Q 004875 349 VIDSCRSLQVFWDVNRKIDSAEL---VWVSQSQAEQRRGRTGRTC--DGQVYRLVT 399 (726)
Q Consensus 349 VId~G~~k~~~yd~~~~~~~l~~---~~iS~a~~~QR~GRaGR~~--~G~~~~L~s 399 (726)
|||+|+.+...|| ..+...+.. .|.|.++|.||+|||||.+ +|.||.++.
T Consensus 255 VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 255 VIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 9999999999998 556666666 8999999999999999995 899988865
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-34 Score=308.37 Aligned_cols=300 Identities=18% Similarity=0.212 Sum_probs=211.2
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecc
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~ 106 (726)
.++++|.++++.+.+++++++++|||||||.++..++++.+ .+++++.|++.++.+.++++..... ..+..++...+.
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~-~~~liv~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~ 93 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELG-MKSLVVTPTRELTRQVASHIRDIGR-YMDTKVAEVYGG 93 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHT-CCEEEECSSHHHHHHHHHHHHHHTT-TSCCCEEEECTT
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhc-CCEEEEeCCHHHHHHHHHHHHHHhh-hcCCcEEEEECC
Confidence 46899999999999999999999999999998888888765 4566777888888888888765322 223334333222
Q ss_pred cc-----ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCH
Q 004875 107 SK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (726)
Q Consensus 107 ~~-----~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~ 181 (726)
.. ......+|+|+||+.|.+.+....+.+.++++||+|||| +..+..+...+...+.......++++||||++.
T Consensus 94 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 94 MPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD-LMFEMGFIDDIKIILAQTSNRKITGLFSATIPE 172 (337)
T ss_dssp SCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH-HHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred cchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH-HhhccccHHHHHHHHhhCCcccEEEEEeCcCCH
Confidence 11 112358999999999999888776666799999999999 444444444433333344557789999999976
Q ss_pred HHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHH
Q 004875 182 TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLI 261 (726)
Q Consensus 182 ~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li 261 (726)
.....+....... ..+..... ...... .+..... .. .
T Consensus 173 ~~~~~~~~~~~~~---~~~~~~~~----~~~~~~-----------------------~~~~~~~------~~----~--- 209 (337)
T 2z0m_A 173 EIRKVVKDFITNY---EEIEACIG----LANVEH-----------------------KFVHVKD------DW----R--- 209 (337)
T ss_dssp HHHHHHHHHSCSC---EEEECSGG----GGGEEE-----------------------EEEECSS------SS----H---
T ss_pred HHHHHHHHhcCCc---eeeecccc----cCCceE-----------------------EEEEeCh------HH----H---
Confidence 5333222221111 11111100 000000 0000000 00 0
Q ss_pred HHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccccccc
Q 004875 262 HDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESS 340 (726)
Q Consensus 262 ~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~G 340 (726)
..+..+.. . .++++|||++++++++.+++.|. .+..+||+++.++|.++++.|++++ +|||||+++++|
T Consensus 210 -~~~~~~~~-~--~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 279 (337)
T 2z0m_A 210 -SKVQALRE-N--KDKGVIVFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRG 279 (337)
T ss_dssp -HHHHHHHT-C--CCSSEEEECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTT
T ss_pred -HHHHHHHh-C--CCCcEEEEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccC
Confidence 11112222 2 24799999999999999999886 3778999999999999999999988 999999999999
Q ss_pred ccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeech
Q 004875 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (726)
Q Consensus 341 Idip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~ 400 (726)
+|+|++++||+ ||++. |..++.||+|||||. ++|.|+.++..
T Consensus 280 id~~~~~~Vi~--------~~~~~----------s~~~~~Q~~GR~gR~g~~g~~~~~~~~ 322 (337)
T 2z0m_A 280 LDIPLVEKVIN--------FDAPQ----------DLRTYIHRIGRTGRMGRKGEAITFILN 322 (337)
T ss_dssp CCCCCBSEEEE--------SSCCS----------SHHHHHHHHTTBCGGGCCEEEEEEESS
T ss_pred CCccCCCEEEE--------ecCCC----------CHHHhhHhcCccccCCCCceEEEEEeC
Confidence 99999999999 88776 455669999999999 78999999983
No 24
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1e-34 Score=334.24 Aligned_cols=325 Identities=17% Similarity=0.208 Sum_probs=214.8
Q ss_pred CcHHHHHHHHHHHH--cCCcEEEEcCCCChHhHHHHHHHHh----cC-----CCcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 27 PVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA----EN-----MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 27 Pi~~~Q~~il~~i~--~~~~vii~a~TGSGKTt~ip~~lle----~~-----~~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
.++++|.++++.+. ++++++++||||||||.++..++++ .. ..+++++.|++.++.++++.+....+..
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~ 173 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 173 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 37899999999999 6789999999999999765555443 22 1368888898888898888887643211
Q ss_pred c---CCeeeeeecccc-------ccCCCCeEEEEChHHHHHHHHhc-CCCCCceeEEEEcccccccccccHHHH---HHH
Q 004875 96 L---GGEVGYHIGHSK-------HLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLV---CVK 161 (726)
Q Consensus 96 l---g~~Vgy~v~~~~-------~~~~~~~Iiv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHeR~~~~d~ll~---~lk 161 (726)
. +..+....+... .....++|+|+||++|++.+... ...+.++++||||||| +..+..|... ++.
T Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~l~~~~f~~~~~~i~~ 252 (563)
T 3i5x_A 174 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD-RLLEIGFRDDLETISG 252 (563)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH-HHTSTTTHHHHHHHHH
T ss_pred cccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH-HHhccchHHHHHHHHH
Confidence 1 111111112211 11336899999999999887653 1234589999999999 4544433322 222
Q ss_pred HHHhc----CCCceEEEeccCCCHHHHHHHHhhc-CCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccc
Q 004875 162 QLLLK----KNDLRVVLMSATADITKYRDYFRDL-GRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELS 236 (726)
Q Consensus 162 ~l~~~----~~~lklIlmSATl~~~~~~~~f~~~-~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 236 (726)
.+... .++.++++||||++... .++.... .....+.+...+.........+.
T Consensus 253 ~l~~~~~~~~~~~~~l~~SAT~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 309 (563)
T 3i5x_A 253 ILNEKNSKSADNIKTLLFSATLDDKV-QKLANNIMNKKECLFLDTVDKNEPEAHERID---------------------- 309 (563)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHH-HHHTTTTCCSSEEEEEESSCSSSCSSCTTEE----------------------
T ss_pred hhhhccccCccCceEEEEEccCCHHH-HHHHHHhcCCCceEEEeccCCCCccccccCc----------------------
Confidence 22222 34789999999997543 2222221 11111111111100000000000
Q ss_pred cccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC-CCCcEEEEecCCCCHH
Q 004875 237 SLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTE 315 (726)
Q Consensus 237 ~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~-~~~~~v~~lh~~l~~~ 315 (726)
..+. ............+..+...+..... ++++||||+++.+++.+++.|... ..++.+..+||+++++
T Consensus 310 -~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~ 379 (563)
T 3i5x_A 310 -QSVV-------ISEKFANSIFAAVEHIKKQIKERDS--NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 379 (563)
T ss_dssp -EEEE-------EESSTTHHHHHHHHHHHHHHHHTTT--CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHH
T ss_pred -eEEE-------ECchhHhhHHHHHHHHHHHHhhcCC--CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHH
Confidence 0000 0001112222333334444433232 379999999999999999999754 2368899999999999
Q ss_pred HHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCce
Q 004875 316 QALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (726)
Q Consensus 316 er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~ 393 (726)
+|..+++.|++++ +|||||+++++|||+|+|++||+ ||++.+...| .||+|||||. .+|.
T Consensus 380 ~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y----------~Qr~GRagR~g~~g~ 441 (563)
T 3i5x_A 380 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANY----------IHRIGRTARSGKEGS 441 (563)
T ss_dssp HHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHH----------HHHHTTSSCTTCCEE
T ss_pred HHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------ECCCCchhhh----------hhhcCccccCCCCce
Confidence 9999999999888 99999999999999999999999 9988866655 9999999999 6899
Q ss_pred EEEeechhhH
Q 004875 394 VYRLVTKSFF 403 (726)
Q Consensus 394 ~~~L~s~~~~ 403 (726)
|+.++++.+.
T Consensus 442 ~i~~~~~~e~ 451 (563)
T 3i5x_A 442 SVLFICKDEL 451 (563)
T ss_dssp EEEEEEGGGH
T ss_pred EEEEEchhHH
Confidence 9999997654
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.2e-34 Score=339.83 Aligned_cols=378 Identities=14% Similarity=0.160 Sum_probs=197.9
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc---CC----CcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NM----EPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~---~~----~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
-..++++|.++++.+.+++++|+++|||||||+++..++++. .. ++++++.|++.++.+..+.+..... ..|
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~-~~~ 89 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE-RHG 89 (696)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT-TTT
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc-cCC
Confidence 355789999999999999999999999999998777776532 11 5788888887777777777665542 123
Q ss_pred Ceeeeeeccccc------cCCCCeEEEEChHHHHHHHHhcCC-CCCceeEEEEcccccccccccHHHHHHHHHHhc----
Q 004875 98 GEVGYHIGHSKH------LSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK---- 166 (726)
Q Consensus 98 ~~Vgy~v~~~~~------~~~~~~Iiv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~---- 166 (726)
..++...+.... ...+++|+|+|||+|++.+..+.+ .+.++++|||||||+..-+.. ...++..++..
T Consensus 90 ~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~-~~~i~~~~l~~~~~~ 168 (696)
T 2ykg_A 90 YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP-YNMIMFNYLDQKLGG 168 (696)
T ss_dssp CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc-HHHHHHHHHHHhhcc
Confidence 334333332211 124689999999999999987765 567999999999996543333 33333322221
Q ss_pred --CCCceEEEeccCCC-------HHHHHHHHhhc---CCCc-----------------ceeE-EEecCCCccceeeceeh
Q 004875 167 --KNDLRVVLMSATAD-------ITKYRDYFRDL---GRGE-----------------RVEV-LAIPSTNQRTIFQRRVS 216 (726)
Q Consensus 167 --~~~lklIlmSATl~-------~~~~~~~f~~~---~~~~-----------------~~~v-~~~~~~~~~~~~~~~~~ 216 (726)
++..++|+||||+. .+.+..++..+ .... +... ...+.. ....|.....
T Consensus 169 ~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~-~~~~fs~~~~ 247 (696)
T 2ykg_A 169 SSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR-ISDKFKYIIA 247 (696)
T ss_dssp CCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCC-SCCHHHHHHH
T ss_pred cCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcc-cCChHHHHHH
Confidence 46789999999987 33333333221 1000 0000 000110 0001100000
Q ss_pred -hHHHHHHH---hccCCC-C----ccccccccc-------------c---------------------------------
Q 004875 217 -YLEQVTEL---LGVDHG-M----TSELSSLRY-------------C--------------------------------- 241 (726)
Q Consensus 217 -yl~~~~~~---~~~~~~-~----~~~~~~~~y-------------~--------------------------------- 241 (726)
+...+... +..+.. . ........| .
T Consensus 248 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~ 327 (696)
T 2ykg_A 248 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 327 (696)
T ss_dssp HHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccc
Confidence 00111100 000000 0 000000000 0
Q ss_pred -------------------CCCCCCcc-------------------ccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEc
Q 004875 242 -------------------SGPSPSMA-------------------NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFL 283 (726)
Q Consensus 242 -------------------~~~~~~~~-------------------~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~ 283 (726)
........ +..........+.+++....... .++++||||
T Consensus 328 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~--~~~~~IIF~ 405 (696)
T 2ykg_A 328 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN--PETITILFV 405 (696)
T ss_dssp HSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTC--TTCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccC--CCCcEEEEe
Confidence 00000000 00001111222223333322112 246899999
Q ss_pred CcHHHHHHHHHHhcCCC--CCcEEEEe--------cCCCCHHHHHHHhhccCC-Cc-EEEEEcccccccccCCCeeEEEe
Q 004875 284 PTYYALEQQWHLMKPLS--SFFKVHIL--------HSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVID 351 (726)
Q Consensus 284 ~~~~~i~~l~~~L~~~~--~~~~v~~l--------h~~l~~~er~~~~~~f~~-~r-kVlvaTniae~GIdip~v~~VId 351 (726)
+++.+++.+++.|...+ ..+.+..+ ||+|+.++|.++++.|+. |. +|||||+++++|||+|+|++||+
T Consensus 406 ~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 406 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 485 (696)
T ss_dssp SCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEE
T ss_pred CcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE
Confidence 99999999999997542 22566666 669999999999999997 77 99999999999999999999999
Q ss_pred CCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH----------hhccCCCCCcccccChHH
Q 004875 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF----------GTLEDHECPAILRLSLRL 421 (726)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~----------~~l~~~~~pei~r~~L~~ 421 (726)
||++.+...| .||+|| ||.++|.||.|+++.+. +.+.....||+.+.+++.
T Consensus 486 --------~d~p~s~~~~----------~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 546 (696)
T 2ykg_A 486 --------YEYVGNVIKM----------IQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 546 (696)
T ss_dssp --------ESCC--CCCC--------------------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred --------eCCCCCHHHH----------HHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence 9999988888 999999 99999999999998765 233444455666655555
Q ss_pred HHHHH
Q 004875 422 QVLLI 426 (726)
Q Consensus 422 ~iL~l 426 (726)
+...+
T Consensus 547 ~~~~i 551 (696)
T 2ykg_A 547 FREKI 551 (696)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.4e-35 Score=323.21 Aligned_cols=317 Identities=20% Similarity=0.247 Sum_probs=118.3
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.++++|.++++.+.+++++++++|||||||.++...+++. ...+++++.|++.++.+.++.+..... ..+..++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~ 121 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF-HMDIKVH 121 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT-TSCCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhc-cCCeeEE
Confidence 4689999999999999999999999999998776666553 234788888998888888887765432 2233333
Q ss_pred eeeccccc-----cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 102 YHIGHSKH-----LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 102 y~v~~~~~-----~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
...+.... ...+++|+|+||+.|++.+......+.++++||+|||| +..+.++...+.+.+...+++.++++||
T Consensus 122 ~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah-~~~~~~~~~~~~~~~~~~~~~~~~i~~S 200 (394)
T 1fuu_A 122 ACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQIYQIFTLLPPTTQVVLLS 200 (394)
T ss_dssp EECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHHSCTTCEEEEEC
T ss_pred EEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH-HhhCCCcHHHHHHHHHhCCCCceEEEEE
Confidence 33222111 11257899999999999988776666799999999999 4555555555555555556788999999
Q ss_pred cCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChh
Q 004875 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (726)
Q Consensus 177 ATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (726)
||++............. +..+....... ........|. ...... .
T Consensus 201 AT~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~-----------------------~~~~~~--------~ 245 (394)
T 1fuu_A 201 ATMPNDVLEVTTKFMRN--PVRILVKKDEL--TLEGIKQFYV-----------------------NVEEEE--------Y 245 (394)
T ss_dssp SSCCHHHHHHHHHHCCS--CEEEEECC-----------------------------------------------------
T ss_pred EecCHHHHHHHHHhcCC--CeEEEecCccc--cCCCceEEEE-----------------------EcCchh--------h
Confidence 99976433322222111 12221111100 0000000000 000000 0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc
Q 004875 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (726)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn 335 (726)
..+.+.+++ .... .+++||||+++++++.+++.|+.. ++.+..+||+++.++|..+++.|+++. +|||||+
T Consensus 246 ~~~~l~~~~----~~~~--~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 317 (394)
T 1fuu_A 246 KYECLTDLY----DSIS--VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 317 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH----hcCC--CCcEEEEECCHHHHHHHHHHHHHc--CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 011111222 1111 368999999999999999999854 578999999999999999999999888 9999999
Q ss_pred cccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHhhc
Q 004875 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (726)
Q Consensus 336 iae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~~l 406 (726)
++++|+|+|++++||+ ||++.+.. ++.||+|||||. ++|.|+.++++++...+
T Consensus 318 ~~~~Gldi~~~~~Vi~--------~~~p~s~~----------~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 318 LLARGIDVQQVSLVIN--------YDLPANKE----------NYIHRIGRGGRFGRKGVAINFVTNEDVGAM 371 (394)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hhhcCCCcccCCEEEE--------eCCCCCHH----------HHHHHcCcccCCCCCceEEEEEchhHHHHH
Confidence 9999999999999999 88776444 449999999999 78999999998766543
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.2e-34 Score=330.99 Aligned_cols=323 Identities=17% Similarity=0.208 Sum_probs=214.5
Q ss_pred cHHHHHHHHHHHH--cCCcEEEEcCCCChHhHHHHHHHHh----cC-----CCcEEEecchHHHHHHHHHHHHhhcC---
Q 004875 28 VMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA----EN-----MEPILCTQPRRFAVVAVAKMVAKGRN--- 93 (726)
Q Consensus 28 i~~~Q~~il~~i~--~~~~vii~a~TGSGKTt~ip~~lle----~~-----~~~Iivt~Prrlaa~~~a~~va~~~~--- 93 (726)
++++|.++++.+. +++++++++|||||||..+..++++ .. ..+++++.|++.++.++++.+.....
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 7899999999999 7889999999999999765555443 21 13688888888888888888876432
Q ss_pred -CccCCeeeeeecccc-------ccCCCCeEEEEChHHHHHHHHhc-CCCCCceeEEEEcccccccccccHHHH---HHH
Q 004875 94 -CELGGEVGYHIGHSK-------HLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLV---CVK 161 (726)
Q Consensus 94 -~~lg~~Vgy~v~~~~-------~~~~~~~Iiv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHeR~~~~d~ll~---~lk 161 (726)
..... +...++... .....++|+|+||++|++.+... ...+.++++||||||| +..+..|... ++.
T Consensus 124 ~~~~~~-~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~l~~~gf~~~~~~i~~ 201 (579)
T 3sqw_A 124 GLKKYA-CVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD-RLLEIGFRDDLETISG 201 (579)
T ss_dssp GGTTSC-EEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH-HHTSTTTHHHHHHHHH
T ss_pred cccceE-EEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChH-HhhcCCCHHHHHHHHH
Confidence 11111 111112111 11236899999999999887653 2234589999999999 4444433332 233
Q ss_pred HHHhcC----CCceEEEeccCCCHHHHHHHHhh-cCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccc
Q 004875 162 QLLLKK----NDLRVVLMSATADITKYRDYFRD-LGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELS 236 (726)
Q Consensus 162 ~l~~~~----~~lklIlmSATl~~~~~~~~f~~-~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 236 (726)
.+...+ ++.++++||||++.... ..... +.....+.+.............+.
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~---------------------- 258 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKVQ-KLANNIMNKKECLFLDTVDKNEPEAHERID---------------------- 258 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHH-HHTTTTCCSSEEEEEESSCSSSCSSCTTEE----------------------
T ss_pred HhhhhhcccccCceEEEEeccCChHHH-HHHHHHcCCCceEEEeecCccccccccccc----------------------
Confidence 332222 37899999999975432 22222 111111111111100000000000
Q ss_pred cccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCC-CCCcEEEEecCCCCHH
Q 004875 237 SLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTE 315 (726)
Q Consensus 237 ~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~-~~~~~v~~lh~~l~~~ 315 (726)
..+. ............+..+...+..... ++++||||+++.+++.+++.|... ..++.+..+||+++++
T Consensus 259 -~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~ 328 (579)
T 3sqw_A 259 -QSVV-------ISEKFANSIFAAVEHIKKQIKERDS--NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 328 (579)
T ss_dssp -EEEE-------EESSTTHHHHHHHHHHHHHHHHTTT--CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHH
T ss_pred -eEEE-------EecchhhhHHHHHHHHHHHHhhcCC--CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHH
Confidence 0000 0001112223333344444433232 369999999999999999999753 2368899999999999
Q ss_pred HHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCce
Q 004875 316 QALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (726)
Q Consensus 316 er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~ 393 (726)
+|..+++.|+.++ +|||||+++++|||+|+|++||+ ||++.+...| .||+|||||. .+|.
T Consensus 329 ~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y----------~Qr~GRagR~g~~g~ 390 (579)
T 3sqw_A 329 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANY----------IHRIGRTARSGKEGS 390 (579)
T ss_dssp HHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHH----------HHHHTTSSCTTCCEE
T ss_pred HHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cCCCCCHHHh----------hhhccccccCCCCce
Confidence 9999999999888 99999999999999999999999 9988866655 9999999999 6899
Q ss_pred EEEeechhhH
Q 004875 394 VYRLVTKSFF 403 (726)
Q Consensus 394 ~~~L~s~~~~ 403 (726)
|+.++++.+.
T Consensus 391 ~i~~~~~~e~ 400 (579)
T 3sqw_A 391 SVLFICKDEL 400 (579)
T ss_dssp EEEEEEGGGH
T ss_pred EEEEEcccHH
Confidence 9999998654
No 28
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.7e-34 Score=328.91 Aligned_cols=312 Identities=16% Similarity=0.139 Sum_probs=213.8
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecc
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~ 106 (726)
..+++|.++++.+.+++++++++|||+|||..+..+++... +.++++.|++.++.+....+... |.. +++..+.
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~-g~~lVisP~~~L~~q~~~~l~~~-gi~----~~~l~~~ 117 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD-GFTLVICPLISLMEDQLMVLKQL-GIS----ATMLNAS 117 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSS-SEEEEECSCHHHHHHHHHHHHHH-TCC----EEECCSS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcC-CcEEEEeCHHHHHHHHHHHHHhc-CCc----EEEEeCC
Confidence 34689999999999999999999999999975555545443 46777777777777777777653 332 2222111
Q ss_pred cc------------ccCCCCeEEEEChHHHH------HHHHhcCCCCCceeEEEEccccccccc-ccHHHHH--HHHHHh
Q 004875 107 SK------------HLSERSKIVFKTAGVLL------DEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVC--VKQLLL 165 (726)
Q Consensus 107 ~~------------~~~~~~~Iiv~T~g~Ll------~~l~~~~l~l~~~~~VIIDEaHeR~~~-~d~ll~~--lk~l~~ 165 (726)
.. ......+|+|+||++|. +.+.. ...+.++++|||||||+.+-. .||...+ +..+..
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~ 196 (591)
T 2v1x_A 118 SSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKR 196 (591)
T ss_dssp CCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHH
T ss_pred CCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECcccccccccccHHHHHHHHHHHH
Confidence 10 02467899999999874 22222 223458999999999964422 2232222 224445
Q ss_pred cCCCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCC
Q 004875 166 KKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (726)
Q Consensus 166 ~~~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~ 245 (726)
..++.++|+||||++..........++...+..+. .........+.+..
T Consensus 197 ~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~-~~~~r~nl~~~v~~------------------------------ 245 (591)
T 2v1x_A 197 QFPNASLIGLTATATNHVLTDAQKILCIEKCFTFT-ASFNRPNLYYEVRQ------------------------------ 245 (591)
T ss_dssp HCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE-CCCCCTTEEEEEEE------------------------------
T ss_pred hCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe-cCCCCcccEEEEEe------------------------------
Confidence 56789999999999876655555444333222211 11100001111000
Q ss_pred CCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccC
Q 004875 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (726)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~ 325 (726)
......+.+..++..+.... .++++||||+++++++.+++.|... ++.+..+||+|+.++|..+++.|+
T Consensus 246 -------~~~~~~~~~~~l~~~l~~~~--~~~~~IVf~~sr~~~e~la~~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~ 314 (591)
T 2v1x_A 246 -------KPSNTEDFIEDIVKLINGRY--KGQSGIIYCFSQKDSEQVTVSLQNL--GIHAGAYHANLEPEDKTTVHRKWS 314 (591)
T ss_dssp -------CCSSHHHHHHHHHHHHTTTT--TTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred -------CCCcHHHHHHHHHHHHHHhc--cCCCeEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHH
Confidence 00001122223333332222 2468999999999999999999854 588999999999999999999999
Q ss_pred CCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 326 SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 326 ~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
.++ +|||||+++++|||+|+|++||+ ||++.+.+ +|.||+|||||. .+|.|+.+|+..+.
T Consensus 315 ~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~~p~s~~----------~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 315 ANEIQVVVATVAFGMGIDKPDVRFVIH--------HSMSKSME----------NYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp TTSSSEEEECTTSCTTCCCSCEEEEEE--------SSCCSSHH----------HHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred cCCCeEEEEechhhcCCCcccccEEEE--------eCCCCCHH----------HHHHHhccCCcCCCCceEEEEEChHHH
Confidence 988 99999999999999999999999 88888554 559999999999 68999999998776
Q ss_pred hh
Q 004875 404 GT 405 (726)
Q Consensus 404 ~~ 405 (726)
..
T Consensus 377 ~~ 378 (591)
T 2v1x_A 377 FR 378 (591)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.8e-33 Score=319.86 Aligned_cols=305 Identities=18% Similarity=0.183 Sum_probs=210.5
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccc
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS 107 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~ 107 (726)
.+++|.++++.+.+++++++++|||||||..+....+... +.++++.|.+.++.+...++.. .|. .+++..+..
T Consensus 26 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~-g~~lvi~P~~aL~~q~~~~l~~-~gi----~~~~l~~~~ 99 (523)
T 1oyw_A 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN-GLTVVVSPLISLMKDQVDQLQA-NGV----AAACLNSTQ 99 (523)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSS-SEEEEECSCHHHHHHHHHHHHH-TTC----CEEEECTTS
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhC-CCEEEECChHHHHHHHHHHHHH-cCC----cEEEEeCCC
Confidence 4679999999999999999999999999964444444333 4566666776666766666654 332 233221111
Q ss_pred ----------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccc-ccHHH--HHHHHHHhcCCCceEEE
Q 004875 108 ----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVL--VCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 108 ----------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-~d~ll--~~lk~l~~~~~~lklIl 174 (726)
.......+|+|+||++|......+.+...++++|||||||+.+-. .||.. ..+..+....++.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~ 179 (523)
T 1oyw_A 100 TREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMA 179 (523)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEE
Confidence 112356899999999996432222222358999999999965422 23322 23444556668899999
Q ss_pred eccCCCHHHHHHHHhhcCCCcceeEEEecCCCccce-eeceehhHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 004875 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTI-FQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (726)
Q Consensus 175 mSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~-~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (726)
+|||++.....++...++...+... +........ +.+. ..
T Consensus 180 lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~~l~~~v~-------------------------------------~~ 220 (523)
T 1oyw_A 180 LTATADDTTRQDIVRLLGLNDPLIQ--ISSFDRPNIRYMLM-------------------------------------EK 220 (523)
T ss_dssp EESCCCHHHHHHHHHHHTCCSCEEE--ECCCCCTTEEEEEE-------------------------------------EC
T ss_pred EeCCCCHHHHHHHHHHhCCCCCeEE--eCCCCCCceEEEEE-------------------------------------eC
Confidence 9999988766666554433222211 221111000 0000 00
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEE
Q 004875 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (726)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlv 332 (726)
. .. ...++..+... .++++||||+++++++.+++.|+.. ++.+..+||+++.++|..+++.|++++ +|||
T Consensus 221 ~-~~---~~~l~~~l~~~---~~~~~IVf~~sr~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlV 291 (523)
T 1oyw_A 221 F-KP---LDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAGLENNVRADVQEKFQRDDLQIVV 291 (523)
T ss_dssp S-SH---HHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred C-CH---HHHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 0 01 11233333322 2368999999999999999999854 578999999999999999999999988 9999
Q ss_pred EcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 333 aTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
||+++++|||+|+|++||+ ||.|.+ .++|.||+|||||. .+|.|+.+|+..+..
T Consensus 292 aT~a~~~GiD~p~v~~VI~--------~~~p~s----------~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 292 ATVAFGMGINKPNVRFVVH--------FDIPRN----------IESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp ECTTSCTTTCCTTCCEEEE--------SSCCSS----------HHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred EechhhCCCCccCccEEEE--------ECCCCC----------HHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 9999999999999999999 888774 45559999999999 589999999987654
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-34 Score=328.29 Aligned_cols=317 Identities=20% Similarity=0.247 Sum_probs=198.5
Q ss_pred cHHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHHHHhcC-----CCcEEEecchHHHHHHHHHHHHhhcCC-ccCCe
Q 004875 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNC-ELGGE 99 (726)
Q Consensus 28 i~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~lle~~-----~~~Iivt~Prrlaa~~~a~~va~~~~~-~lg~~ 99 (726)
++++|.++++.+.++ +++++++|||||||.++...+++.. ..+++++.|++.++.+.++++....+. .+...
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~ 221 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEE
Confidence 578899999999987 9999999999999988777766542 237999999999999999888775432 12222
Q ss_pred eeeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 100 Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
.++............+|+|+||+.|.+.+....+.+.++++|||||||+...+..+...+.+.....+++.++|+||||+
T Consensus 222 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 301 (508)
T 3fho_A 222 FGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATF 301 (508)
T ss_dssp C----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred EEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCC
Confidence 22222222223447899999999999998887766779999999999954433445444444444456689999999998
Q ss_pred CH--HHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhH
Q 004875 180 DI--TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (726)
Q Consensus 180 ~~--~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (726)
+. +.+...+.. . ...+...... +... .....+ .........
T Consensus 302 ~~~~~~~~~~~~~--~---~~~i~~~~~~----~~~~--------------------~~~~~~--------~~~~~~~~k 344 (508)
T 3fho_A 302 SERVEKYAERFAP--N---ANEIRLKTEE----LSVE--------------------GIKQLY--------MDCQSEEHK 344 (508)
T ss_dssp STHHHHHHHHHST--T---CEEECCCCCC----------------------------CCCCEE--------EEC--CHHH
T ss_pred CHHHHHHHHHhcC--C---CeEEEecccc----CCcc--------------------cceEEE--------EECCchHHH
Confidence 63 334433321 1 1111111100 0000 000000 000001111
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
. ..+..+..... .+++||||+++++++.+++.|.. .++.+..+||+++.++|..+++.|+++. +|||||++
T Consensus 345 ~----~~l~~ll~~~~--~~~~LVF~~s~~~a~~l~~~L~~--~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~ 416 (508)
T 3fho_A 345 Y----NVLVELYGLLT--IGQSIIFCKKKDTAEEIARRMTA--DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNV 416 (508)
T ss_dssp H----HHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTT--TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-
T ss_pred H----HHHHHHHHhcC--CCcEEEEECCHHHHHHHHHHHHh--CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCCh
Confidence 1 22222222222 37999999999999999999985 4578899999999999999999999888 99999999
Q ss_pred ccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 337 ae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
+++|+|+|++++||+ ||.+... ..+-|..++.||+|||||. .+|.|+.+++..
T Consensus 417 l~~GiDip~v~~VI~--------~~~p~~~----~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 417 IARGIDVSQVNLVVN--------YDMPLDQ----AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp ----CCCTTCCEEEC------------CC---------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred hhcCCCccCCCEEEE--------ECCCCcc----cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 999999999999999 7766321 1123556779999999999 689999999853
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.4e-33 Score=317.76 Aligned_cols=355 Identities=13% Similarity=0.165 Sum_probs=196.2
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----C---CCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N---MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~---~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.+.++++|.++++.+.+++++++++|||||||.++..++++. . ..+++++.|++.++.+..+.+..... ..|
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~ 80 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE-RLG 80 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH-TTT
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhc-cCC
Confidence 356789999999999999999999999999997766665442 1 45677888888778877777765432 113
Q ss_pred Ceeeeeeccccc------cCCCCeEEEEChHHHHHHHHhcCC-CCCceeEEEEcccccccccccHHHHHHHHHHhc----
Q 004875 98 GEVGYHIGHSKH------LSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK---- 166 (726)
Q Consensus 98 ~~Vgy~v~~~~~------~~~~~~Iiv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~---- 166 (726)
..++...+.... ...+.+|+|+||++|.+.+....+ .+.++++|||||||. ..+......++...+..
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN-TSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG-CSTTCHHHHHHHHHHHHHTSS
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc-cCCcchHHHHHHHHHHhhhcc
Confidence 333333232211 123589999999999999887665 566899999999994 44443344444333332
Q ss_pred --CCCceEEEeccCCCH----------HHHHHHHhhcCCCc-----------------c-eeEEEecCCCccceeecee-
Q 004875 167 --KNDLRVVLMSATADI----------TKYRDYFRDLGRGE-----------------R-VEVLAIPSTNQRTIFQRRV- 215 (726)
Q Consensus 167 --~~~lklIlmSATl~~----------~~~~~~f~~~~~~~-----------------~-~~v~~~~~~~~~~~~~~~~- 215 (726)
.++.++++||||+.. +.+......++... + ........... ..+....
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTS-NTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSC-CHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCccc-ChHHHHHH
Confidence 266899999999832 22222222221100 0 00000000000 0000000
Q ss_pred hhHHHHHHHhc--------------cCCCCccc--cc-c-----c-----------------------------------
Q 004875 216 SYLEQVTELLG--------------VDHGMTSE--LS-S-----L----------------------------------- 238 (726)
Q Consensus 216 ~yl~~~~~~~~--------------~~~~~~~~--~~-~-----~----------------------------------- 238 (726)
..+........ .+.+.... .. . .
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00000000000 00000000 00 0 0
Q ss_pred ------------cccCC-CCCCc----------------------cccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEc
Q 004875 239 ------------RYCSG-PSPSM----------------------ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFL 283 (726)
Q Consensus 239 ------------~y~~~-~~~~~----------------------~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~ 283 (726)
.+... ..... ............+.+++.......+ .+++||||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~--~~k~lVF~ 396 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP--ETKTILFV 396 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT--TCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC--CceEEEEe
Confidence 00000 00000 0000001112223333333333333 37999999
Q ss_pred CcHHHHHHHHHHhcCCC----------CCcEEEEecCCCCHHHHHHHhhccCC-Cc-EEEEEcccccccccCCCeeEEEe
Q 004875 284 PTYYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVID 351 (726)
Q Consensus 284 ~~~~~i~~l~~~L~~~~----------~~~~v~~lh~~l~~~er~~~~~~f~~-~r-kVlvaTniae~GIdip~v~~VId 351 (726)
+++..++.+++.|...+ .+.....+||+|+.++|.++++.|+. +. +|||||+++++|||+|++++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 99999999999997532 13345566789999999999999998 87 99999999999999999999999
Q ss_pred CCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
||++.+...| .||+|| ||..+|.||.|+++.+.
T Consensus 477 --------~d~p~s~~~~----------~Qr~GR-gR~~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 477 --------YEYVGNVIKM----------IQTRGR-GRARDSKCFLLTSSADV 509 (555)
T ss_dssp --------ESCCSSCCCE----------ECSSCC-CTTTSCEEEEEESCHHH
T ss_pred --------eCCCCCHHHH----------HHhcCc-CcCCCceEEEEEcCCCH
Confidence 9999988888 999999 99999999999998654
No 32
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.6e-33 Score=325.83 Aligned_cols=308 Identities=14% Similarity=0.125 Sum_probs=219.5
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccC----CCCe
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLS----ERSK 115 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~----~~~~ 115 (726)
.++++++++||||||||+.+++.+.+... .+++.|+|.+|.++++++... | ..++..++...... ...+
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~~~--gl~l~PtR~LA~Qi~~~l~~~-g----~~v~lltG~~~~iv~TpGr~~~ 225 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSAKS--GVYCGPLKLLAHEIFEKSNAA-G----VPCDLVTGEERVTVQPNGKQAS 225 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHSSS--EEEEESSHHHHHHHHHHHHHT-T----CCEEEECSSCEECCSTTCCCCS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCC--eEEEeCHHHHHHHHHHHHHhc-C----CcEEEEECCeeEEecCCCcccc
Confidence 46789999999999999988888877643 366789999999999998663 3 34555544443321 2478
Q ss_pred EEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEeccCCCHHHHHHHHhhcCCC
Q 004875 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFRDLGRG 194 (726)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~-~~lklIlmSATl~~~~~~~~f~~~~~~ 194 (726)
++++|++++. ....+++||||||| +..+.++...+.+.+...+ ++.+++++|||. +.+..+....+..
T Consensus 226 il~~T~e~~~--------l~~~v~lvVIDEaH-~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~--~~i~~l~~~~~~~ 294 (677)
T 3rc3_A 226 HVSCTVEMCS--------VTTPYEVAVIDEIQ-MIRDPARGWAWTRALLGLCAEEVHLCGEPAAI--DLVMELMYTTGEE 294 (677)
T ss_dssp EEEEEGGGCC--------SSSCEEEEEECSGG-GGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH--HHHHHHHHHHTCC
T ss_pred eeEecHhHhh--------hcccCCEEEEecce-ecCCccchHHHHHHHHccCccceEEEeccchH--HHHHHHHHhcCCc
Confidence 9999986542 13488999999999 4577778777777776666 678999999994 3444444433222
Q ss_pred cceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCC
Q 004875 195 ERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESD 274 (726)
Q Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~ 274 (726)
+.+..... ..+... . ...+. .+. ...
T Consensus 295 --~~v~~~~r-----~~~l~~-------------------------~--------~~~l~------------~l~-~~~- 320 (677)
T 3rc3_A 295 --VEVRDYKR-----LTPISV-------------------------L--------DHALE------------SLD-NLR- 320 (677)
T ss_dssp --EEEEECCC-----SSCEEE-------------------------C--------SSCCC------------SGG-GCC-
T ss_pred --eEEEEeee-----cchHHH-------------------------H--------HHHHH------------HHH-hcC-
Confidence 22211100 000000 0 00000 000 011
Q ss_pred CCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCC--Cc-EEEEEcccccccccCCCeeEEEe
Q 004875 275 IEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS--HR-KVILATNIAESSVTIPKVAYVID 351 (726)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~--~r-kVlvaTniae~GIdip~v~~VId 351 (726)
+..+||++++++++.+++.|... ++.+.++||+|++++|..+++.|+. |+ +||||||++++|||+ +|++||+
T Consensus 321 --~g~iIf~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~ 395 (677)
T 3rc3_A 321 --PGDCIVCFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIF 395 (677)
T ss_dssp --TTEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEE
T ss_pred --CCCEEEEcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEE
Confidence 23478899999999999999854 5789999999999999999999987 76 999999999999999 9999999
Q ss_pred CCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCC----CceEEEeechh--hHhhccCCCCCcccccChHHHHHH
Q 004875 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC----DGQVYRLVTKS--FFGTLEDHECPAILRLSLRLQVLL 425 (726)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~----~G~~~~L~s~~--~~~~l~~~~~pei~r~~L~~~iL~ 425 (726)
+|..|. .||+..+. ...|+|.++|.||+|||||.+ +|.||++++++ .+..+.....|+|.+.++....++
T Consensus 396 ~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~ 471 (677)
T 3rc3_A 396 YSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 471 (677)
T ss_dssp SCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHH
T ss_pred CCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHH
Confidence 999887 57766333 256999999999999999995 58999999887 667788889999999877766666
Q ss_pred Hhh
Q 004875 426 ICC 428 (726)
Q Consensus 426 l~~ 428 (726)
++.
T Consensus 472 l~~ 474 (677)
T 3rc3_A 472 IEM 474 (677)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 33
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.7e-34 Score=329.97 Aligned_cols=299 Identities=17% Similarity=0.175 Sum_probs=215.3
Q ss_pred CCCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh---cCCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 22 ~r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle---~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
.+..+|+++. .++.+.++++++++||||||||+++...+++ ....+++++.|+|.+|.++++.+. |.
T Consensus 169 ~~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~-------~~ 238 (618)
T 2whx_A 169 ERIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-------GL 238 (618)
T ss_dssp CCCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred cccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc-------CC
Confidence 4667888755 3888999999999999999999775444332 233478888898888888887654 34
Q ss_pred eeeeeecc-ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 99 EVGYHIGH-SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 99 ~Vgy~v~~-~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
.++|..+. +....+...+.++|.+.+.+.+.... .+.++++|||||||++....+..+..+...+. +++.++|+|||
T Consensus 239 ~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~-~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~~~~q~il~SA 316 (618)
T 2whx_A 239 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSST-RVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-MGEAAAIFMTA 316 (618)
T ss_dssp CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCS-SCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECS
T ss_pred ceeEecccceeccCCCceEEEEChHHHHHHHhccc-cccCCeEEEEECCCCCCccHHHHHHHHHHHhc-ccCccEEEEEC
Confidence 56776554 33446678899999999998887764 46799999999999764444445555554442 36789999999
Q ss_pred CCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhH
Q 004875 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (726)
Q Consensus 178 Tl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (726)
|++.. ...++.. ...+ +.+...+ +.. ...
T Consensus 317 T~~~~-~~~~~~~-----~~~~-----------~~v~~~~--------------------------~~~-----~~~--- 345 (618)
T 2whx_A 317 TPPGS-TDPFPQS-----NSPI-----------EDIEREI--------------------------PER-----SWN--- 345 (618)
T ss_dssp SCTTC-CCSSCCC-----SSCE-----------EEEECCC--------------------------CSS-----CCS---
T ss_pred CCchh-hhhhhcc-----CCce-----------eeecccC--------------------------CHH-----HHH---
Confidence 98643 1111110 0111 1111000 000 000
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
.++..+.. . .+++||||+++++++.+++.|+.. ++.+..+||. +|.++++.|++++ +||||||+
T Consensus 346 -----~ll~~l~~-~---~~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv 410 (618)
T 2whx_A 346 -----TGFDWITD-Y---QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDI 410 (618)
T ss_dssp -----SSCHHHHH-C---CSCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT----THHHHTTHHHHSCCSEEEECGG
T ss_pred -----HHHHHHHh-C---CCCEEEEECChhHHHHHHHHHHHc--CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcH
Confidence 00111111 1 369999999999999999999854 5789999984 6778899999888 99999999
Q ss_pred ccccccCCCeeEEEeCCCceeeee--cCCCCccccceEeecHHhHHHHcCCCCCCC--CceEEEeec
Q 004875 337 AESSVTIPKVAYVIDSCRSLQVFW--DVNRKIDSAELVWVSQSQAEQRRGRTGRTC--DGQVYRLVT 399 (726)
Q Consensus 337 ae~GIdip~v~~VId~G~~k~~~y--d~~~~~~~l~~~~iS~a~~~QR~GRaGR~~--~G~~~~L~s 399 (726)
+++|||+| +++|||+|+.+.+.+ +...++......|+|.++|.||+|||||.+ +|.||.+++
T Consensus 411 ~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 411 SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp GGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 99999997 999999999877665 444445566677999999999999999993 899999997
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.3e-32 Score=315.48 Aligned_cols=356 Identities=14% Similarity=0.159 Sum_probs=170.7
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----C---CCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N---MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~---~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.+.++++|.++++.+.+++++++++|||||||.++..++++. . ..+++++.|++.++.+..+.+...... .|
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~ 83 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QG 83 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-GT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-cC
Confidence 467889999999999999999999999999997766655432 1 456778888887788877777654321 12
Q ss_pred Ceeeeeecccc------ccCCCCeEEEEChHHHHHHHHhcCC-CCCceeEEEEcccccccccccHHHHHHHHHHhc----
Q 004875 98 GEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK---- 166 (726)
Q Consensus 98 ~~Vgy~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~---- 166 (726)
..++...+... ....+.+|+|+||++|.+.+..+.+ .+.++++||||||| +..+......+++.++..
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGG-GCSTTSHHHHHHHHHHHHHHCC
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCc-ccCCcchHHHHHHHHHHhhhcc
Confidence 22332222211 1123578999999999999987766 56799999999999 455444454444444433
Q ss_pred -CCCceEEEeccCCCH---HHHHHHH-------hhcCCCc-----------------c-eeEEEecCCCccceeeceeh-
Q 004875 167 -KNDLRVVLMSATADI---TKYRDYF-------RDLGRGE-----------------R-VEVLAIPSTNQRTIFQRRVS- 216 (726)
Q Consensus 167 -~~~lklIlmSATl~~---~~~~~~f-------~~~~~~~-----------------~-~~v~~~~~~~~~~~~~~~~~- 216 (726)
.+..++|+||||+.. ..+.+++ ..++... + ........... ..+.....
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 241 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH-NPFAAIISN 241 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSC-CHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcC-ChHHHHHHH
Confidence 467899999999832 1222222 2111000 0 00000000000 00000000
Q ss_pred hHHHHHHHhcc-------------CCCCccc--cc-c-------------------------------------------
Q 004875 217 YLEQVTELLGV-------------DHGMTSE--LS-S------------------------------------------- 237 (726)
Q Consensus 217 yl~~~~~~~~~-------------~~~~~~~--~~-~------------------------------------------- 237 (726)
..+.+...... ..+.... .. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00000000000 0000000 00 0
Q ss_pred -----cccc---------CCCCCC------------------ccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCc
Q 004875 238 -----LRYC---------SGPSPS------------------MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPT 285 (726)
Q Consensus 238 -----~~y~---------~~~~~~------------------~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~ 285 (726)
..|. ...... .............+.+++........ ++++|||+++
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~--~~k~lVF~~~ 399 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP--QTRTLLFAKT 399 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCT--TCCEEEEESS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCC--CceEEEEEcc
Confidence 0000 000000 00000001111122223322222222 3799999999
Q ss_pred HHHHHHHHHHhcCCC----------CCcEEEEecCCCCHHHHHHHhhccCC-Cc-EEEEEcccccccccCCCeeEEEeCC
Q 004875 286 YYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVIDSC 353 (726)
Q Consensus 286 ~~~i~~l~~~L~~~~----------~~~~v~~lh~~l~~~er~~~~~~f~~-~r-kVlvaTniae~GIdip~v~~VId~G 353 (726)
+..++.+++.|.... .+.....+||+++.++|..+++.|+. |. +|||||+++++|||+|+|++||+
T Consensus 400 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~-- 477 (556)
T 4a2p_A 400 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL-- 477 (556)
T ss_dssp HHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEE--
T ss_pred HHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE--
Confidence 999999999997541 13455667889999999999999998 87 99999999999999999999999
Q ss_pred CceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHh
Q 004875 354 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (726)
Q Consensus 354 ~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~ 404 (726)
||++.+...| .||+|| ||.++|.||.|+++.+..
T Consensus 478 ------~d~p~s~~~~----------~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 478 ------YEYSGNVTKM----------IQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp ------ETCCSCHHHH----------HHC---------CCEEEEESCHHHH
T ss_pred ------eCCCCCHHHH----------HHhcCC-CCCCCceEEEEEeCcchH
Confidence 9998855554 999999 999999999999987653
No 35
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.2e-33 Score=311.92 Aligned_cols=353 Identities=16% Similarity=0.177 Sum_probs=228.1
Q ss_pred CCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc---CCCcEEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~---~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
..++++++|.++++.+.++ ++++++|||+|||.++..++... ...+++++.|++.++.+.++.+.+..+..- ..+
T Consensus 6 ~~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~-~~v 83 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPP-EKI 83 (494)
T ss_dssp HHHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCG-GGE
T ss_pred CCCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcch-hhe
Confidence 3478899999999999998 99999999999998888776654 456888899998888899988888765411 122
Q ss_pred eeeecccc-----ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 101 GYHIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 101 gy~v~~~~-----~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
+...+... ......+|+|+|+++|.+.+....+.+.++++||||||| +..+......+.+.+....+..++++|
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~~~~~~~~~~~~~~~~~l~l 162 (494)
T 1wp9_A 84 VALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH-RAVGNYAYVFIAREYKRQAKNPLVIGL 162 (494)
T ss_dssp EEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG-GCSTTCHHHHHHHHHHHHCSSCCEEEE
T ss_pred EEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc-ccCCCCcHHHHHHHHHhcCCCCeEEEE
Confidence 22212111 112357899999999999988776667799999999999 454444444555556556678899999
Q ss_pred ccCCC--HHHHHHHHhhcCCCcceeEEEecCCCcc-------ce------eeceehhHHH-----H---HH---HhccCC
Q 004875 176 SATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQR-------TI------FQRRVSYLEQ-----V---TE---LLGVDH 229 (726)
Q Consensus 176 SATl~--~~~~~~~f~~~~~~~~~~v~~~~~~~~~-------~~------~~~~~~yl~~-----~---~~---~~~~~~ 229 (726)
|||+. .+.+.+++..++.... .. ........ .. .+.....+.. . .. ..+...
T Consensus 163 TaTp~~~~~~~~~l~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 163 TASPGSTPEKIMEVINNLGIEHI-EY-RSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp ESCSCSSHHHHHHHHHHTTCCEE-EE-CCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred ecCCCCCcHHHHHHHHhcChhee-ec-cCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99984 5667777766532211 00 00000000 00 0000000000 0 00 000000
Q ss_pred CCcccccc----------ccccCCCCCC-ccc------------------------------------------------
Q 004875 230 GMTSELSS----------LRYCSGPSPS-MAN------------------------------------------------ 250 (726)
Q Consensus 230 ~~~~~~~~----------~~y~~~~~~~-~~~------------------------------------------------ 250 (726)
........ .......... +..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence 00000000 0000000000 000
Q ss_pred -----------------cccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecC---
Q 004875 251 -----------------AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHS--- 310 (726)
Q Consensus 251 -----------------~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~--- 310 (726)
..........+.+++........ ++++|||++++..++.+++.|... ++.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~--~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~ 396 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQ--NSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQAS 396 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCT--TCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSC
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCC--CCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEecccc
Confidence 00011112222333333322222 479999999999999999999854 588999999
Q ss_pred -----CCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcC
Q 004875 311 -----SVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (726)
Q Consensus 311 -----~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~G 384 (726)
+++.++|..+++.|+++. +|||||+++++|||+|++++||. ||++. |.+++.||+|
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~--------~d~~~----------~~~~~~Qr~G 458 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF--------YEPVP----------SAIRSIQRRG 458 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE--------SSCCH----------HHHHHHHHHT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE--------eCCCC----------CHHHHHHHHh
Confidence 999999999999999888 99999999999999999999998 88775 4556699999
Q ss_pred CCCCCCCceEEEeechhhH
Q 004875 385 RTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 385 RaGR~~~G~~~~L~s~~~~ 403 (726)
||||.++|.+|+|+++...
T Consensus 459 R~~R~g~g~~~~l~~~~t~ 477 (494)
T 1wp9_A 459 RTGRHMPGRVIILMAKGTR 477 (494)
T ss_dssp TSCSCCCSEEEEEEETTSH
T ss_pred hccCCCCceEEEEEecCCH
Confidence 9999988999999997644
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.1e-33 Score=307.10 Aligned_cols=299 Identities=16% Similarity=0.152 Sum_probs=198.6
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh--cCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle--~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
..++++|.++++.+.+++++++++|||||||+.+...++. ....+++++.|++.++.++++++..... .|..++..
T Consensus 20 ~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~ 97 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD--EKVKIFGF 97 (414)
T ss_dssp SCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEEEC
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc--CCceEEEE
Confidence 3568999999999999999999999999999754444433 2445788888889999999998877433 44445544
Q ss_pred eccccc---------c-CCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccc---------ccccc-ccHHHHHHHHH
Q 004875 104 IGHSKH---------L-SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH---------ERSVE-SDLVLVCVKQL 163 (726)
Q Consensus 104 v~~~~~---------~-~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH---------eR~~~-~d~ll~~lk~l 163 (726)
.+.... . ...++|+|+||+.|++.+.. +.+.++++||||||| +|+++ .+|...+++.+
T Consensus 98 ~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i 175 (414)
T 3oiy_A 98 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 175 (414)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHH
T ss_pred ECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHH
Confidence 333221 1 23489999999999887764 344589999999999 34444 44433323333
Q ss_pred Hhc------------CCCceEEEeccCCCHHHHH-HHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCC
Q 004875 164 LLK------------KNDLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHG 230 (726)
Q Consensus 164 ~~~------------~~~lklIlmSATl~~~~~~-~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 230 (726)
+.. +++.+++++|||+.+..+. .++..... +.+..... ..-.+.
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~i~---------------- 232 (414)
T 3oiy_A 176 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN---FTVGRLVS----VARNIT---------------- 232 (414)
T ss_dssp HHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS---CCSSCCCC----CCCSEE----------------
T ss_pred HHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc---cCcCcccc----ccccch----------------
Confidence 221 1678999999994322111 11111000 00000000 000000
Q ss_pred CccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEE-Eec
Q 004875 231 MTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVH-ILH 309 (726)
Q Consensus 231 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~-~lh 309 (726)
..|... ...+.+.+++.. . ++++||||+++.+++.+++.|... ++.+. .+|
T Consensus 233 -------~~~~~~------------~~~~~l~~~l~~----~---~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~h 284 (414)
T 3oiy_A 233 -------HVRISS------------RSKEKLVELLEI----F---RDGILIFAQTEEEGKELYEYLKRF--KFNVGETWS 284 (414)
T ss_dssp -------EEEESS------------CCHHHHHHHHHH----H---CSSEEEEESSHHHHHHHHHHHHHT--TCCEEESSS
T ss_pred -------heeecc------------CHHHHHHHHHHH----c---CCCEEEEECCHHHHHHHHHHHHHc--CCceehhhc
Confidence 000000 001112233322 1 268999999999999999999854 57787 888
Q ss_pred CCCCHHHHHHHhhccCCCc-EEEEE----cccccccccCCC-eeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHc
Q 004875 310 SSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (726)
Q Consensus 310 ~~l~~~er~~~~~~f~~~r-kVlva----Tniae~GIdip~-v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~ 383 (726)
|. +|. ++.|++|. +|||| |+++++|||+|+ |++||+ ||.+.+ .|..+|.||+
T Consensus 285 ~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~~p~~--------~~~~~y~qr~ 342 (414)
T 3oiy_A 285 EF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WGTPSG--------PDVYTYIQAS 342 (414)
T ss_dssp CH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ESCCTT--------TCHHHHHHHH
T ss_pred Cc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--------ECCCCC--------CCHHHHHHHh
Confidence 84 343 88999988 99999 999999999999 999999 888831 1455669999
Q ss_pred CCCCCCC-----CceEEEeechh
Q 004875 384 GRTGRTC-----DGQVYRLVTKS 401 (726)
Q Consensus 384 GRaGR~~-----~G~~~~L~s~~ 401 (726)
|||||.+ +|.|+.++.+.
T Consensus 343 GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 343 GRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp GGGCCEETTEECCEEEEEECCCH
T ss_pred CccccCCCCCCcceEEEEEEccH
Confidence 9999983 79999999543
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.98 E-value=4.9e-33 Score=328.44 Aligned_cols=352 Identities=15% Similarity=0.196 Sum_probs=198.1
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----CC----CcEEEecchHHHHHHH-HHHHHhhcC
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NM----EPILCTQPRRFAVVAV-AKMVAKGRN 93 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~~----~~Iivt~Prrlaa~~~-a~~va~~~~ 93 (726)
+..+.++++|.++++.+.++++++|++|||||||.++..++++. .. ++++++.|++.++.+. ++.+....+
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 46688999999999999999999999999999997776665442 11 4677777777777777 777777665
Q ss_pred C--ccCCeeeeeeccc--cccCCCCeEEEEChHHHHHHHH------hcCCCCCceeEEEEcccccccccccHHHHHHHHH
Q 004875 94 C--ELGGEVGYHIGHS--KHLSERSKIVFKTAGVLLDEMR------DRGLNALKYKVIILDEVHERSVESDLVLVCVKQL 163 (726)
Q Consensus 94 ~--~lg~~Vgy~v~~~--~~~~~~~~Iiv~T~g~Ll~~l~------~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l 163 (726)
. .++...|...... .......+|+|+||++|.+.+. ...+.+.++++||||||| +.........+++.+
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH-~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH-HTNKEAVYNNIMRHY 161 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGG-GCBTTBSSCSHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcc-ccCccchHHHHHHHH
Confidence 3 3222222221111 1112568999999999998873 334556699999999999 544433332222222
Q ss_pred Hhc-----C---------CCceEEEeccCCCHH----------HHHHHHhhcCC-----------------Ccce-eEEE
Q 004875 164 LLK-----K---------NDLRVVLMSATADIT----------KYRDYFRDLGR-----------------GERV-EVLA 201 (726)
Q Consensus 164 ~~~-----~---------~~lklIlmSATl~~~----------~~~~~f~~~~~-----------------~~~~-~v~~ 201 (726)
+.. + +..++|+||||+... .+.+....+.. ..+. .+..
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 221 2 678999999998641 22222222111 0000 0100
Q ss_pred ecCCCccceeeceeh-hHHHHHHHhccCCCCcccccccccc---------------------------------------
Q 004875 202 IPSTNQRTIFQRRVS-YLEQVTELLGVDHGMTSELSSLRYC--------------------------------------- 241 (726)
Q Consensus 202 ~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~~~~~~~~~~y~--------------------------------------- 241 (726)
..... ...+..... ....+...+.... ..+.....|.
T Consensus 242 ~~~~~-~~~~~~~l~~l~~~i~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (699)
T 4gl2_A 242 ADATR-EDPFKEKLLEIMTRIQTYCQMSP--MSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIR 318 (699)
T ss_dssp EC------CHHHHHHHHHHHHHHHHTCCC--CSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccccc-CChHHHHHHHHHHHHHHHhccCc--chhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 10000 000000000 0000000000000 0000000000
Q ss_pred --------------------C-CCCCCccccccCh---------------------------hHHHHHHHHHHHHHhhCC
Q 004875 242 --------------------S-GPSPSMANAEIKP---------------------------EVHKLIHDLVLHIHKNES 273 (726)
Q Consensus 242 --------------------~-~~~~~~~~~~~~~---------------------------~~~~li~~lv~~i~~~~~ 273 (726)
. ..........+.. .....+.+++.......+
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~ 398 (699)
T 4gl2_A 319 MIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTE 398 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCC
Confidence 0 0000000000000 000001122222222222
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHhcCC----CCCcEEEEecCC--------CCHHHHHHHhhccCCCc-EEEEEccccccc
Q 004875 274 DIEKSILVFLPTYYALEQQWHLMKPL----SSFFKVHILHSS--------VDTEQALMAMKICKSHR-KVILATNIAESS 340 (726)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~----~~~~~v~~lh~~--------l~~~er~~~~~~f~~~r-kVlvaTniae~G 340 (726)
.++++|||++++..++.+++.|... ..++.+..+||+ |+.++|.++++.|++|. +|||||+++++|
T Consensus 399 -~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~G 477 (699)
T 4gl2_A 399 -ESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEG 477 (699)
T ss_dssp -SCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTT
T ss_pred -CCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Confidence 1379999999999999999999854 125889999999 99999999999999998 999999999999
Q ss_pred ccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeec
Q 004875 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVT 399 (726)
Q Consensus 341 Idip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s 399 (726)
||+|+|++||+ ||++.+...| .||+|||||.+ .++.++.
T Consensus 478 IDip~v~~VI~--------~d~p~s~~~~----------~Qr~GRArr~g--~~~~l~~ 516 (699)
T 4gl2_A 478 LDIKECNIVIR--------YGLVTNEIAM----------VQARGRARADE--STYVLVA 516 (699)
T ss_dssp SCCCSCCCCEE--------ESCCCCHHHH----------HHHHTTSCSSS--CEEEEEE
T ss_pred CccccCCEEEE--------eCCCCCHHHH----------HHHcCCCCCCC--ceEEEEE
Confidence 99999999999 9998865554 99999987654 5555544
No 38
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.98 E-value=4e-31 Score=315.89 Aligned_cols=354 Identities=14% Similarity=0.161 Sum_probs=178.4
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----C---CCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N---MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~---~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
...++++|.++++.+.+++++++++|||||||.++..++++. . .++++++.|++.++.+....+...... .|
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~-~~ 324 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QG 324 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-GT
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc-CC
Confidence 456789999999999999999999999999997766665443 1 457788888887777777776654321 12
Q ss_pred Ceeeeeecccc------ccCCCCeEEEEChHHHHHHHHhcCC-CCCceeEEEEcccccccccccHHHHHHHHHHhc----
Q 004875 98 GEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK---- 166 (726)
Q Consensus 98 ~~Vgy~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~---- 166 (726)
..++...+... ....+.+|+|+||++|.+.+....+ .+.++++||||||| +..+......+++.+...
T Consensus 325 ~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH-~~~~~~~~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 325 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFNS 403 (797)
T ss_dssp CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGG-GCSTTSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECcc-ccCCCccHHHHHHHHHHHhhcc
Confidence 22332222221 1124689999999999999987665 56689999999999 444444455555444433
Q ss_pred -CCCceEEEeccCCCH----------HHHHHHHhhcCCCc------------------ceeEEEecCCCccceeeceeh-
Q 004875 167 -KNDLRVVLMSATADI----------TKYRDYFRDLGRGE------------------RVEVLAIPSTNQRTIFQRRVS- 216 (726)
Q Consensus 167 -~~~lklIlmSATl~~----------~~~~~~f~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~- 216 (726)
.+..++|+||||+.. +.+......++... .......+.... ..+.....
T Consensus 404 ~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 482 (797)
T 4a2q_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH-NPFAAIISN 482 (797)
T ss_dssp CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSC-CHHHHHHHH
T ss_pred CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCC-cHHHHHHHH
Confidence 567899999999832 22333222211100 000000000000 00000000
Q ss_pred hHHHHHHHhcc-------------CCCCccc--cc-c----ccccCCCCCC-----------------------------
Q 004875 217 YLEQVTELLGV-------------DHGMTSE--LS-S----LRYCSGPSPS----------------------------- 247 (726)
Q Consensus 217 yl~~~~~~~~~-------------~~~~~~~--~~-~----~~y~~~~~~~----------------------------- 247 (726)
....+...... ..+.... .. . ......+...
T Consensus 483 l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 562 (797)
T 4a2q_A 483 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (797)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 00000000000 0000000 00 0 0000000000
Q ss_pred ----------------------c---------------------cccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcC
Q 004875 248 ----------------------M---------------------ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLP 284 (726)
Q Consensus 248 ----------------------~---------------------~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~ 284 (726)
. ....... ....+.+++.......+ ++++|||++
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-K~~~L~~lL~~~~~~~~--~~kvLIF~~ 639 (797)
T 4a2q_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENP-KLEELVCILDDAYRYNP--QTRTLLFAK 639 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHCS--SCCEEEEES
T ss_pred cHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-HHHHHHHHHHHHhccCC--CCeEEEEEC
Confidence 0 0000001 11112222222212222 379999999
Q ss_pred cHHHHHHHHHHhcCCC----------CCcEEEEecCCCCHHHHHHHhhccCC-Cc-EEEEEcccccccccCCCeeEEEeC
Q 004875 285 TYYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVIDS 352 (726)
Q Consensus 285 ~~~~i~~l~~~L~~~~----------~~~~v~~lh~~l~~~er~~~~~~f~~-~r-kVlvaTniae~GIdip~v~~VId~ 352 (726)
++..++.+++.|+... .+.....+||+++.++|..+++.|+. |. +|||||+++++|||+|+|++||+
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~- 718 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL- 718 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE-
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE-
Confidence 9999999999997531 23456677999999999999999998 88 99999999999999999999999
Q ss_pred CCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhH
Q 004875 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (726)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 403 (726)
||++.+... +.||+|| ||.++|.||.|+++.+.
T Consensus 719 -------yd~p~s~~~----------~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 719 -------YEYSGNVTK----------MIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp -------ESCCSCHHH----------HHTC--------CCCEEEEECCHHH
T ss_pred -------eCCCCCHHH----------HHHhcCC-CCCCCceEEEEEeCCcH
Confidence 999885554 4999999 99999999999998654
No 39
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.98 E-value=2e-31 Score=296.01 Aligned_cols=282 Identities=16% Similarity=0.186 Sum_probs=194.9
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH---hcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeecc-ccccCCCCeE
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH-SKHLSERSKI 116 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll---e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~-~~~~~~~~~I 116 (726)
++++++++||||||||+.+...++ .....+++++.|++.+|.++++.+. |..|++..+. .....++..+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~~~~~~~~ 73 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSERTGNEIV 73 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------CCCSE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccccCCCCceE
Confidence 478999999999999976533333 1233477788888888888776553 3346665543 3334556788
Q ss_pred EEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHHHHHHHHhhcCCCcc
Q 004875 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGER 196 (726)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~~~~~~~~ 196 (726)
.++|.+.+.+.+... ..+.++++|||||+|++....+.....++.+. .+++.++|+||||+... ...+... .
T Consensus 74 ~~~~~~~l~~~l~~~-~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-----~~~~~~~-~ 145 (431)
T 2v6i_A 74 DFMCHSTFTMKLLQG-VRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-----TEAFPPS-N 145 (431)
T ss_dssp EEEEHHHHHHHHHHT-CCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-----CCSSCCC-S
T ss_pred EEEchHHHHHHHhcC-ccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-----hhhhcCC-C
Confidence 899999998887773 34679999999999976544455566666654 34689999999998642 0000000 0
Q ss_pred eeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCC
Q 004875 197 VEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIE 276 (726)
Q Consensus 197 ~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~ 276 (726)
.++..+.. . + +... .. .++..+.. . +
T Consensus 146 ~~i~~~~~-----------~-----------------------~---~~~~-----~~--------~~~~~l~~-~---~ 171 (431)
T 2v6i_A 146 SPIIDEET-----------R-----------------------I---PDKA-----WN--------SGYEWITE-F---D 171 (431)
T ss_dssp SCCEEEEC-----------C-----------------------C---CSSC-----CS--------SCCHHHHS-C---S
T ss_pred Cceeeccc-----------c-----------------------C---CHHH-----HH--------HHHHHHHc-C---C
Confidence 00000000 0 0 0000 00 00111111 1 3
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCc
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~ 355 (726)
+++|||||++++++.+++.|+.. ++.+..+||+ +|.++++.|++|+ +|||||+++|+|||+| +.+|||+|..
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~ 244 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKT 244 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcc
Confidence 68999999999999999999865 5889999997 5777899999888 9999999999999999 9999999999
Q ss_pred eeeeecCCCCccccceEeecHHhHHHHcCCCCCCC-CceEEEeec
Q 004875 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVT 399 (726)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s 399 (726)
+.+.|| ..++......|.|.++|.||+||+||.+ .+.|+.+|.
T Consensus 245 ~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 245 IKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999998 5566666678999999999999999995 344555554
No 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=8.3e-32 Score=299.73 Aligned_cols=286 Identities=23% Similarity=0.241 Sum_probs=191.0
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHHHh---cCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccc-cccCCC
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-KHLSER 113 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~lle---~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~-~~~~~~ 113 (726)
++.++++++++||||||||+++...+++ ....+++++.|++.+|.++++.+.. -.+++..+.- ...++.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~-------~~v~~~~~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG-------LDVKFHTQAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-------SCEEEESSCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc-------CCeEEecccceeccCCc
Confidence 3568899999999999999765444433 2334677777888888888876642 1344543332 233455
Q ss_pred CeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHHHHHHHHhhcCC
Q 004875 114 SKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGR 193 (726)
Q Consensus 114 ~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~~~~~~f~~~~~ 193 (726)
.-+-+++.+.+...+... ..+.++++|||||+|+.....++..+.+..+.. +++.++++||||++... ..+.. .
T Consensus 77 ~l~~~l~~~~l~~~~~~~-~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~~---~ 150 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEP-TRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFPH---S 150 (440)
T ss_dssp CCEEEEEHHHHHHHHTSS-SCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCC---C
T ss_pred cceeeecccchhHhhhCc-ccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhhh---c
Confidence 556777888877766554 346699999999999654444455566666553 46789999999986431 11110 0
Q ss_pred CcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCC
Q 004875 194 GERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNES 273 (726)
Q Consensus 194 ~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~ 273 (726)
..++.. +... + +.. ... .++..+.. .
T Consensus 151 ~~~~~~-------------~~~~-----------------------~---~~~-----~~~--------~~~~~l~~-~- 176 (440)
T 1yks_A 151 NGEIED-------------VQTD-----------------------I---PSE-----PWN--------TGHDWILA-D- 176 (440)
T ss_dssp SSCEEE-------------EECC-----------------------C---CSS-----CCS--------SSCHHHHH-C-
T ss_pred CCCeeE-------------eeec-----------------------c---ChH-----HHH--------HHHHHHHh-c-
Confidence 000100 0000 0 000 000 00111111 1
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeC
Q 004875 274 DIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDS 352 (726)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~ 352 (726)
++++|||||++++++.+++.|+.. ++.+..+|| ++|..+++.|++++ +|||||+++|+|||+| +++|||+
T Consensus 177 --~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 177 --KRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp --CSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEEC
T ss_pred --CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeC
Confidence 369999999999999999999854 588999999 46778899999998 9999999999999999 9999999
Q ss_pred CCceeeee-cCCCCccccceEeecHHhHHHHcCCCCCC--CCceEEEeec
Q 004875 353 CRSLQVFW-DVNRKIDSAELVWVSQSQAEQRRGRTGRT--CDGQVYRLVT 399 (726)
Q Consensus 353 G~~k~~~y-d~~~~~~~l~~~~iS~a~~~QR~GRaGR~--~~G~~~~L~s 399 (726)
|+.+.+.| +...++......|.|.++|.||+||+||. .+|.||.+|+
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 99988776 33334555556789999999999999997 5899999984
No 41
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=1.8e-30 Score=313.90 Aligned_cols=356 Identities=13% Similarity=0.142 Sum_probs=180.1
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC-------CCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-------MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~-------~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
...++++|.++++.+.+++++++++|||||||.++..++++.. ..+++++.|++.++.+....+...... .+
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-~~ 324 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QG 324 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-TT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-cC
Confidence 5678899999999999999999999999999988777776542 346778888887777777766654321 12
Q ss_pred Ceeeeeecccc------ccCCCCeEEEEChHHHHHHHHhcCC-CCCceeEEEEcccccccccccHHHHHHHHHHhc----
Q 004875 98 GEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK---- 166 (726)
Q Consensus 98 ~~Vgy~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~---- 166 (726)
..++...+... ....+.+|+|+||++|.+.+..+.+ .+.++++||||||| +..+.+....+++.+...
T Consensus 325 ~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH-~~~~~~~~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 325 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFNS 403 (936)
T ss_dssp CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGG-GCSTTCHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECcc-ccCCCccHHHHHHHHHHHhhcc
Confidence 22332222211 1123579999999999999887655 56689999999999 454444455555454443
Q ss_pred -CCCceEEEeccCCCH----------HHHHHHHhhcCCC-----------------cc-eeEEEecCCCccceeecee-h
Q 004875 167 -KNDLRVVLMSATADI----------TKYRDYFRDLGRG-----------------ER-VEVLAIPSTNQRTIFQRRV-S 216 (726)
Q Consensus 167 -~~~lklIlmSATl~~----------~~~~~~f~~~~~~-----------------~~-~~v~~~~~~~~~~~~~~~~-~ 216 (726)
.+..++++||||+.. +.+......++.. .+ ........... ..+.... .
T Consensus 404 ~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~-~~~~~~l~~ 482 (936)
T 4a2w_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH-NPFAAIISN 482 (936)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSC-CHHHHHHHH
T ss_pred CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccC-cHHHHHHHH
Confidence 567899999999832 2222222211100 00 00111110000 0000000 0
Q ss_pred hHHHHHHHhc-------------cCCCCccc--cc----cc-cccCCCCC------------------------------
Q 004875 217 YLEQVTELLG-------------VDHGMTSE--LS----SL-RYCSGPSP------------------------------ 246 (726)
Q Consensus 217 yl~~~~~~~~-------------~~~~~~~~--~~----~~-~y~~~~~~------------------------------ 246 (726)
.+..+..... ...+.... .. .. .....+..
T Consensus 483 l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 483 LMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 0000000000 00000000 00 00 00000000
Q ss_pred ---------------------Ccc--------------------ccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCc
Q 004875 247 ---------------------SMA--------------------NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPT 285 (726)
Q Consensus 247 ---------------------~~~--------------------~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~ 285 (726)
... +..........+.+++..... ...++++|||+++
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~--~~~~~rvLIF~~t 640 (936)
T 4a2w_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR--YNPQTRTLLFAKT 640 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT--SCTTCCEEEEESS
T ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc--cCCCCeEEEEeCC
Confidence 000 000000011111122221111 1224799999999
Q ss_pred HHHHHHHHHHhcCCC----------CCcEEEEecCCCCHHHHHHHhhccCC-Cc-EEEEEcccccccccCCCeeEEEeCC
Q 004875 286 YYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVIDSC 353 (726)
Q Consensus 286 ~~~i~~l~~~L~~~~----------~~~~v~~lh~~l~~~er~~~~~~f~~-~r-kVlvaTniae~GIdip~v~~VId~G 353 (726)
+..++.+++.|.... .+.....+||+|+..+|.++++.|+. |. +|||||+++++|||+|+|++||+
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~-- 718 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL-- 718 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE--
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE--
Confidence 999999999997531 13445667999999999999999998 88 99999999999999999999999
Q ss_pred CceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechhhHh
Q 004875 354 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (726)
Q Consensus 354 ~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~ 404 (726)
||++.+...| .||+|| ||..+|.||.|+++....
T Consensus 719 ------yD~p~s~~~~----------iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 719 ------YEYSGNVTKM----------IQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp ------ESCCSCSHHH----------HCC--------CCCEEEEESCHHHH
T ss_pred ------eCCCCCHHHH----------HHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 9999876666 999999 999999999999986553
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=3.5e-31 Score=307.11 Aligned_cols=290 Identities=17% Similarity=0.192 Sum_probs=203.5
Q ss_pred HHHHHHH------cCCcEEEEcCCCChHhHHHHHHHHh---cCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeee
Q 004875 34 KIVEKVL------ENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (726)
Q Consensus 34 ~il~~i~------~~~~vii~a~TGSGKTt~ip~~lle---~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v 104 (726)
++++.+. ++++++++||||||||+++...+++ ....+++++.|++.+|.++++.+... .+++..
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~-------~i~~~~ 299 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL-------PVRYLT 299 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS-------CCEECC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcC-------Ceeeec
Confidence 6776666 8999999999999999765444432 23356778888898888888766421 234443
Q ss_pred cc-ccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHHH
Q 004875 105 GH-SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITK 183 (726)
Q Consensus 105 ~~-~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~~ 183 (726)
+. .....+..-+.+++.+.+.+.+... ..+.++++|||||||+.....+..+..++.+.. +++.++|+||||++...
T Consensus 300 ~~l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i 377 (673)
T 2wv9_A 300 PAVQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGTS 377 (673)
T ss_dssp C---CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC
T ss_pred ccccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhh
Confidence 32 1233556678889999998887765 346799999999999765555566667766653 36789999999986331
Q ss_pred HHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCccccccChhHHHHHHH
Q 004875 184 YRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHD 263 (726)
Q Consensus 184 ~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~ 263 (726)
..+. .. ..++..+... + +.. ... .
T Consensus 378 -~~~~----~~-~~~i~~v~~~----------------------------------~---~~~-----~~~--------~ 401 (673)
T 2wv9_A 378 -DPFP----DT-NSPVHDVSSE----------------------------------I---PDR-----AWS--------S 401 (673)
T ss_dssp -CSSC----CC-SSCEEEEECC----------------------------------C---CSS-----CCS--------S
T ss_pred -hhhc----cc-CCceEEEeee----------------------------------c---CHH-----HHH--------H
Confidence 0000 00 0111111000 0 000 000 0
Q ss_pred HHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccccccccc
Q 004875 264 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVT 342 (726)
Q Consensus 264 lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GId 342 (726)
++..+.. .++++|||||++++++.+++.|+.. ++.+..+||. +|.++++.|++++ +|||||+++|+|||
T Consensus 402 ~l~~l~~----~~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GID 471 (673)
T 2wv9_A 402 GFEWITD----YAGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGAN 471 (673)
T ss_dssp CCHHHHS----CCSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCC
T ss_pred HHHHHHh----CCCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhccee
Confidence 1111111 1479999999999999999999855 5889999993 7888999999988 99999999999999
Q ss_pred CCCeeEEEeCCCcee--eeecCCCCccccceEeecHHhHHHHcCCCCCC--CCceEEEeec
Q 004875 343 IPKVAYVIDSCRSLQ--VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT--CDGQVYRLVT 399 (726)
Q Consensus 343 ip~v~~VId~G~~k~--~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~--~~G~~~~L~s 399 (726)
+| +++|||+|.... ..||...++..+...|.|.++|.||+||+||. ++|.||.++.
T Consensus 472 ip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 472 FG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred eC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 99 999999997654 34676656666566899999999999999998 6899999974
No 43
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=265.46 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=148.4
Q ss_pred CChhhhcccC-CCCCCHHHHHHHHHHHHHcCccccCCCCCCCCCCHhHHHHHhCCCChHHHHHHHhhcccCCHHHHHHHH
Q 004875 435 SDPKVLLQKA-LDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLG 513 (726)
Q Consensus 435 ~~~~~~~~~~-l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~l~~lpl~p~~~~~l~~~~~~~c~~e~l~i~ 513 (726)
|++..++ ++ +|||+.+++.+|++.|..+||||. + | +||++|+.|++||+||++||||+.+..+||++|+++||
T Consensus 2 g~~~~~l-~~~ldpP~~~~l~~A~~~L~~LgAld~-~--g--~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~ia 75 (270)
T 3i4u_A 2 GDRGPEF-ELGTRGSPMETLITAMEQLYTLGALDD-E--G--LLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIV 75 (270)
T ss_dssp -------------CCHHHHHHHHHHHHHHHTSBCT-T--S--CBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCchhcc-ccCCCCcCHHHHHHHHHHHHHcCCcCC-C--C--CccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHH
Confidence 3444444 55 999999999999999999999997 3 6 59999999999999999999999999999999999999
Q ss_pred HHhccCCCcccCCCCchHHHHHHhccccCCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 004875 514 ILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVT 593 (726)
Q Consensus 514 a~ls~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (726)
|+|++++ ||++|.++++++++++.+|.+++| ||++++|+|+.|+.
T Consensus 76 A~Ls~~~-~f~~p~~~~~~a~~~~~~f~~~~s-----------D~ltlLn~~~~~~~----------------------- 120 (270)
T 3i4u_A 76 SMLSVQN-VFYRPKDKQALADQKKAKFHQTEG-----------DHLTLLAVYNSWKN----------------------- 120 (270)
T ss_dssp HHHTSSC-CBCCCGGGHHHHHHHHHTTCBTTB-----------HHHHHHHHHHHHHH-----------------------
T ss_pred HHHCCCc-cccCCchhHHHHHHHHHHccCCCC-----------hHHHHHHHHHHHHH-----------------------
Confidence 9999975 899999998888999999987655 99999999999985
Q ss_pred cccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCCccccchhccCCCCC
Q 004875 594 ASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPR 664 (726)
Q Consensus 594 ~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 664 (726)
.+..++||++||||+++|++|.++|.||.+++++++++..+. .. +++.+|+|++.|++..
T Consensus 121 ----~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~----~~---~~~~i~~~L~aG~~~n 180 (270)
T 3i4u_A 121 ----NKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSC----GK---STVRVQKAICSGFFRN 180 (270)
T ss_dssp ----TTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC----TT---CTHHHHHHHHHHHGGG
T ss_pred ----cCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCC----cc---hHHHHHHHHHHHhHHH
Confidence 223578999999999999999999999999999988754331 12 5677899999988764
No 44
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=5.5e-29 Score=305.20 Aligned_cols=299 Identities=14% Similarity=0.173 Sum_probs=207.9
Q ss_pred cHHHHHHHHHHHHc----CC--cEEEEcCCCChHhHHHHHHHH--hcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 28 VMSLREKIVEKVLE----NR--VTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 28 i~~~Q~~il~~i~~----~~--~vii~a~TGSGKTt~ip~~ll--e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
.+++|.++++.+.+ ++ +++++|+||||||.++...++ -....+++++.|++.++.+.++++.+.++ ..+..
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i~ 682 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA-NWPVR 682 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHST-TTTCC
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhh-cCCCe
Confidence 49999999999876 55 899999999999966544332 23345788888999999999998887654 23334
Q ss_pred eeeeecccc----------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCC
Q 004875 100 VGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (726)
Q Consensus 100 Vgy~v~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~ 169 (726)
++...++.. ......+|+|+|++.+. +.+.+.++++|||||+|+- .. ...+.+...+++
T Consensus 683 v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~--g~----~~~~~l~~l~~~ 751 (1151)
T 2eyq_A 683 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF--GV----RHKERIKAMRAN 751 (1151)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS--CH----HHHHHHHHHHTT
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc--Ch----HHHHHHHHhcCC
Confidence 554433221 11346899999998662 3455679999999999942 11 122223333567
Q ss_pred ceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 004875 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (726)
Q Consensus 170 lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 249 (726)
.++++||||+.+..+...+.... ...++..+. . ...++..++.
T Consensus 752 ~~vl~lSATp~p~~l~~~~~~~~---~~~~i~~~~--~-~r~~i~~~~~------------------------------- 794 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMSGMR---DLSIIATPP--A-RRLAVKTFVR------------------------------- 794 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHTTTS---EEEECCCCC--C-BCBCEEEEEE-------------------------------
T ss_pred CCEEEEcCCCChhhHHHHHhcCC---CceEEecCC--C-CccccEEEEe-------------------------------
Confidence 89999999987777666654321 111111111 0 1111111100
Q ss_pred ccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-
Q 004875 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (726)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r- 328 (726)
.... ......+...+. .+++++|||+++++++.+++.|+...++..+..+||+|+.++|.++++.|++++
T Consensus 795 --~~~~--~~i~~~il~~l~-----~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~ 865 (1151)
T 2eyq_A 795 --EYDS--MVVREAILREIL-----RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 865 (1151)
T ss_dssp --ECCH--HHHHHHHHHHHT-----TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSC
T ss_pred --cCCH--HHHHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 0000 111122222221 247999999999999999999987666788999999999999999999999988
Q ss_pred EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 329 kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
+|||||+++++|||+|++++||. +++.. + +.+++.||+||+||. .+|.||.++++.
T Consensus 866 ~VLVaT~v~e~GiDip~v~~VIi--------~~~~~----~-----~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 866 NVLVCTTIIETGIDIPTANTIII--------ERADH----F-----GLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CEEEESSTTGGGSCCTTEEEEEE--------TTTTS----S-----CHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cEEEECCcceeeecccCCcEEEE--------eCCCC----C-----CHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999999996 55532 1 345669999999998 689999998754
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.96 E-value=6e-30 Score=300.27 Aligned_cols=300 Identities=15% Similarity=0.215 Sum_probs=200.9
Q ss_pred CCcHHHHHHHHHHHHcC------CcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~------~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
+.++++|.++++.+.++ .+++++||||||||..+...+++. ...+++++.|++.+|.+.++++...+. ..|
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~-~~g 445 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFS-KFN 445 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHT-CSS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhh-hcC
Confidence 36799999999998865 589999999999998777766543 234677888888889999888877653 234
Q ss_pred Ceeeeeecccc----------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcC
Q 004875 98 GEVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (726)
Q Consensus 98 ~~Vgy~v~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~ 167 (726)
..|+...+... ......+|+|+|++.+.+ .+.+.++++|||||+|+.+... -..+....
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q------r~~l~~~~ 514 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ------REALMNKG 514 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-----------CCCCSSS
T ss_pred ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH------HHHHHHhC
Confidence 44554433321 113468999999987743 3456799999999999522111 11122233
Q ss_pred CCceEEEeccCCCHHHHHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccCCCCCC
Q 004875 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (726)
Q Consensus 168 ~~lklIlmSATl~~~~~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 247 (726)
.+.++++||||+.+..+...+.. .. .+.++ ...+.. ..++...+.
T Consensus 515 ~~~~vL~mSATp~p~tl~~~~~g--~~-~~s~i--~~~p~~-r~~i~~~~~----------------------------- 559 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMALAFYG--DL-DVTVI--DEMPPG-RKEVQTMLV----------------------------- 559 (780)
T ss_dssp SCCCEEEEESSCCCHHHHHHHTC--CS-SCEEE--CCCCSS-CCCCEECCC-----------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHhC--Cc-ceeee--eccCCC-CcceEEEEe-----------------------------
Confidence 56899999999877766644321 11 11221 110000 011111100
Q ss_pred ccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHH--------HHHHHHHHhcC-CCCCcEEEEecCCCCHHHHH
Q 004875 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY--------ALEQQWHLMKP-LSSFFKVHILHSSVDTEQAL 318 (726)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~--------~i~~l~~~L~~-~~~~~~v~~lh~~l~~~er~ 318 (726)
... . .+ .++..+..... .+++++||||..+ .++.+++.|.. ...++.+..+||+|++++|.
T Consensus 560 --~~~---~-~~---~l~~~i~~~l~-~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~ 629 (780)
T 1gm5_A 560 --PMD---R-VN---EVYEFVRQEVM-RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKD 629 (780)
T ss_dssp --CSS---T-HH---HHHHHHHHHTT-TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSH
T ss_pred --ccc---h-HH---HHHHHHHHHHh-cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHH
Confidence 000 0 01 12222222222 2468999999764 46778888876 44568899999999999999
Q ss_pred HHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEE
Q 004875 319 MAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYR 396 (726)
Q Consensus 319 ~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~ 396 (726)
.+++.|++|+ +|||||+++++|||+|++++||+ ||++.. +.+++.||+||+||. .+|.||.
T Consensus 630 ~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~r~---------~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 630 RVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPERF---------GLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSSS---------CTTHHHHHHHTSCCSSTTCEEEC
T ss_pred HHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCCCC---------CHHHHHHHhcccCcCCCCCEEEE
Confidence 9999999998 99999999999999999999998 887741 234559999999998 7899999
Q ss_pred eec
Q 004875 397 LVT 399 (726)
Q Consensus 397 L~s 399 (726)
+++
T Consensus 693 l~~ 695 (780)
T 1gm5_A 693 VVG 695 (780)
T ss_dssp CCC
T ss_pred EEC
Confidence 997
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=3e-29 Score=282.28 Aligned_cols=323 Identities=16% Similarity=0.168 Sum_probs=202.7
Q ss_pred CCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
..+.++++|.++++.+.+++++++++|||+|||.++..++...+ .+++++.|++.++.+.++++.. ++.. .++..
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~-~~~Lvl~P~~~L~~Q~~~~~~~-~~~~---~v~~~ 164 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS-TPTLIVVPTLALAEQWKERLGI-FGEE---YVGEF 164 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHC-SCEEEEESSHHHHHHHHHHGGG-GCGG---GEEEB
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcC-CCEEEEECCHHHHHHHHHHHHh-CCCc---ceEEE
Confidence 35789999999999999999999999999999988877777664 4677777887788888887766 4432 04433
Q ss_pred eccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCHH-
Q 004875 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADIT- 182 (726)
Q Consensus 104 v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~~- 182 (726)
.+.. ....+|+|+|++.+...+..- ..++++||||||| +..+..+. .+....+..++++||||+...
T Consensus 165 ~g~~---~~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH-~~~~~~~~-----~~~~~~~~~~~l~lSATp~~~~ 232 (472)
T 2fwr_A 165 SGRI---KELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVH-HLPAESYV-----QIAQMSIAPFRLGLTATFERED 232 (472)
T ss_dssp SSSC---BCCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGG-GTTSTTTH-----HHHHTCCCSEEEEEESCCCCTT
T ss_pred CCCc---CCcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCc-CCCChHHH-----HHHHhcCCCeEEEEecCccCCC
Confidence 2222 345789999999998766431 1368999999999 55554442 244445677899999998521
Q ss_pred ----HHHHHHhhcCCCcceeEEEec-----CC--CccceeeceehhHHHHHHHh-------c-c--CCCCc--ccccccc
Q 004875 183 ----KYRDYFRDLGRGERVEVLAIP-----ST--NQRTIFQRRVSYLEQVTELL-------G-V--DHGMT--SELSSLR 239 (726)
Q Consensus 183 ----~~~~~f~~~~~~~~~~v~~~~-----~~--~~~~~~~~~~~yl~~~~~~~-------~-~--~~~~~--~~~~~~~ 239 (726)
.+..+++.. +.... .. .......+.+..-+.....+ . . ..+.. ....-..
T Consensus 233 ~~~~~l~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 233 GRHEILKEVVGGK-------VFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SGGGSHHHHTCCE-------EEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred CHHHHHHHHhCCe-------EeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 234444321 00000 00 00000000000000000000 0 0 00000 0000000
Q ss_pred ccC--CCCCCccccc-----------cChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEE
Q 004875 240 YCS--GPSPSMANAE-----------IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVH 306 (726)
Q Consensus 240 y~~--~~~~~~~~~~-----------~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~ 306 (726)
+.. ...+...... ......+.+.+++ ... .++++|||+++.+.++.+++.|. +.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l----~~~--~~~k~lvF~~~~~~~~~l~~~l~-------~~ 372 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREIL----ERH--RKDKIIIFTRHNELVYRISKVFL-------IP 372 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHH----HHT--SSSCBCCBCSCHHHHHHHHHHTT-------CC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH----HhC--CCCcEEEEECCHHHHHHHHHHhC-------cc
Confidence 000 0000000000 0001112222222 222 24799999999999999999885 44
Q ss_pred EecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCC
Q 004875 307 ILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 385 (726)
Q Consensus 307 ~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GR 385 (726)
.+||+++..+|.++++.|+++. +|||||+++++|+|+|++++||+ ||++.+... +.||+||
T Consensus 373 ~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~--------~~~~~s~~~----------~~Q~~GR 434 (472)
T 2fwr_A 373 AITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI--------MSGSGSARE----------YIQRLGR 434 (472)
T ss_dssp BCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--------ECCSSCCHH----------HHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--------ECCCCCHHH----------HHHHHhh
Confidence 6899999999999999999888 99999999999999999999999 888875544 4999999
Q ss_pred CCCCCCc----eEEEeechh
Q 004875 386 TGRTCDG----QVYRLVTKS 401 (726)
Q Consensus 386 aGR~~~G----~~~~L~s~~ 401 (726)
|||.++| .+|.++++.
T Consensus 435 ~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 435 ILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SBCCCTTTCCEEEEEEEECS
T ss_pred ccCCCCCCceEEEEEEEeCC
Confidence 9999766 467777754
No 47
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=2e-28 Score=278.33 Aligned_cols=319 Identities=14% Similarity=0.122 Sum_probs=201.4
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh---cCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle---~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
..++++|.++++.+.+++++++++|||||||.++..++.. .+.++++++.|++.++.+..+++... +...+..++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~-~~~~~~~v~~ 190 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIKK 190 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT-TSSCGGGEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh-hcCCccceEE
Confidence 4679999999999999999999999999999776555543 45558888889888888888888554 2222223333
Q ss_pred eeccccc---cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccC
Q 004875 103 HIGHSKH---LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSAT 178 (726)
Q Consensus 103 ~v~~~~~---~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSAT 178 (726)
..+.... .....+|+|+|++.|.+. ....+.++++|||||+| +....+ +..++. ..+..++++||||
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H-~~~~~~-----~~~il~~~~~~~~~l~lSAT 261 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECH-LATGKS-----ISSIISGLNNCMFKFGLSGS 261 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGG-GCCHHH-----HHHHGGGCTTCCEEEEEESC
T ss_pred EecCCccccccccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCc-CCCccc-----HHHHHHhcccCcEEEEEEeC
Confidence 2222221 236789999999977543 11234589999999999 444322 333333 3467799999999
Q ss_pred CCHH-----HHHHHHhhcCCCcceeEEEecCC--------CccceeeceehhHHHHHHHhccCCCCccccccccccCCCC
Q 004875 179 ADIT-----KYRDYFRDLGRGERVEVLAIPST--------NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (726)
Q Consensus 179 l~~~-----~~~~~f~~~~~~~~~~v~~~~~~--------~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~~~~ 245 (726)
+... .+..+++.. +...+.. ......+.....-........ . ..|.
T Consensus 262 p~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~----~~~~---- 320 (510)
T 2oca_A 262 LRDGKANIMQYVGMFGEI-------FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLK------G----KTYQ---- 320 (510)
T ss_dssp GGGCSSCHHHHHHHHCSE-------ECCCCCC---------CCEEEEEEEECCHHHHHHHT------T----CCHH----
T ss_pred CCCCcccHHHhHHhhCCe-------EEeeCHHHHhhCCcCCCceEEEEeecCChHHhcccc------c----cchH----
Confidence 8432 233344321 1111110 000000000000000000000 0 0000
Q ss_pred CCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccC
Q 004875 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (726)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~ 325 (726)
.............+.+.+++..... .++..++||++ .++++.+++.|...+ ..+..+||+++.++|.++++.|+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~ivf~~-~~~~~~l~~~L~~~~--~~v~~~~g~~~~~~r~~i~~~f~ 394 (510)
T 2oca_A 321 EEIKIITGLSKRNKWIAKLAIKLAQ---KDENAFVMFKH-VSHGKAIFDLIKNEY--DKVYYVSGEVDTETRNIMKTLAE 394 (510)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHT---TTCEEEEEESS-HHHHHHHHHHHHTTC--SSEEEESSSTTHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHh---cCCCeEEEEec-HHHHHHHHHHHHHcC--CCeEEEECCCCHHHHHHHHHHHh
Confidence 0000000001112233344433332 22356777777 888999999998654 47999999999999999999999
Q ss_pred CCc-EEEEEc-ccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCce-EEEeec
Q 004875 326 SHR-KVILAT-NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ-VYRLVT 399 (726)
Q Consensus 326 ~~r-kVlvaT-niae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~-~~~L~s 399 (726)
++. +||||| +++++|+|+|++++||. |+++.+...+ .||+||+||.++|. ++.+|+
T Consensus 395 ~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~~~~s~~~~----------~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 395 NGKGIIIVASYGVFSTGISVKNLHHVVL--------AHGVKSKIIV----------LQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SSCCCSCCHH----------HHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCCCEEEEEcChhhcccccccCcEEEE--------eCCCCCHHHH----------HHHHhcccccCCCCceEEEEE
Confidence 888 999999 99999999999999998 8888765555 99999999996654 666665
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=4.4e-29 Score=304.19 Aligned_cols=270 Identities=16% Similarity=0.133 Sum_probs=177.2
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh--cCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle--~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
..++++|.++++.+.++++++++||||||||+.+...++. ....+++++.|++.++.++++++.. ++ ..|..++..
T Consensus 77 f~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~l 154 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFGF 154 (1104)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEEE
Confidence 3578999999999999999999999999999755444433 2345788888999999999999887 44 445556655
Q ss_pred eccccc---------c-CCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccc---------cccc-ccHHHHHHHHH
Q 004875 104 IGHSKH---------L-SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE---------RSVE-SDLVLVCVKQL 163 (726)
Q Consensus 104 v~~~~~---------~-~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHe---------R~~~-~d~ll~~lk~l 163 (726)
++.... . ...++|+|+|||+|++.+.. +.+.++++|||||||+ |+++ .+|....++.+
T Consensus 155 ~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 155 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp CTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 544322 1 23489999999999887664 3345899999999993 3333 33332323333
Q ss_pred Hh-cC-----------CCceEEEeccCCCHHHHH-HHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCC
Q 004875 164 LL-KK-----------NDLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHG 230 (726)
Q Consensus 164 ~~-~~-----------~~lklIlmSATl~~~~~~-~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 230 (726)
+. .+ ++.+++++|||+.++.+. .++..... +.+...... .-.+.
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~---i~v~~~~~~----~~~i~---------------- 289 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN---FTVGRLVSV----ARNIT---------------- 289 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC---CCCCBCCCC----CCCEE----------------
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee---EEeccCCCC----cCCce----------------
Confidence 22 12 678999999995332211 22221100 000000000 00000
Q ss_pred CccccccccccCCCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEE-Eec
Q 004875 231 MTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVH-ILH 309 (726)
Q Consensus 231 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~-~lh 309 (726)
..|... .....+.+++.. . ++++||||++++.++.+++.|... ++.+. .+|
T Consensus 290 -------~~~~~~------------~k~~~L~~ll~~----~---~~~~LVF~~s~~~a~~l~~~L~~~--g~~~~~~lh 341 (1104)
T 4ddu_A 290 -------HVRISS------------RSKEKLVELLEI----F---RDGILIFAQTEEEGKELYEYLKRF--KFNVGETWS 341 (1104)
T ss_dssp -------EEEESC------------CCHHHHHHHHHH----H---CSSEEEEESSSHHHHHHHHHHHHT--TCCEEESSS
T ss_pred -------eEEEec------------CHHHHHHHHHHh----c---CCCEEEEECcHHHHHHHHHHHHhC--CCCeeeEec
Confidence 000000 001112223322 1 269999999999999999999854 57787 899
Q ss_pred CCCCHHHHHHHhhccCCCc-EEEEE----cccccccccCCC-eeEEEeCCCce
Q 004875 310 SSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSL 356 (726)
Q Consensus 310 ~~l~~~er~~~~~~f~~~r-kVlva----Tniae~GIdip~-v~~VId~G~~k 356 (726)
| +|.+ ++.|++|+ +|||| |+++++|||+|+ |++||+.|+++
T Consensus 342 g-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 342 E-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp S-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred C-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9 2445 89999988 99999 999999999999 99999944444
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.95 E-value=8.3e-28 Score=293.11 Aligned_cols=261 Identities=18% Similarity=0.194 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh---cCCCcEEEecchHHHHHHHHHHHHhhcCCccCC----eeee
Q 004875 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG----EVGY 102 (726)
Q Consensus 30 ~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle---~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~----~Vgy 102 (726)
++|.++++.+.++++++++||||||||+ +...++. ....+++++.|++.++.++++.+..... ..+. .++.
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~-~~~i~~~~~v~~ 136 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAE-KAGVGTENLIGY 136 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHT-TTCCSGGGSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHh-hcCCCccceEEE
Confidence 9999999999999999999999999995 3333332 2234677777888888888887765432 1222 3333
Q ss_pred eeccc---------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccc-ccHHHHHHHHHH--------
Q 004875 103 HIGHS---------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLL-------- 164 (726)
Q Consensus 103 ~v~~~---------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-~d~ll~~lk~l~-------- 164 (726)
.++.. ..... ++|+|+|||+|++.+.. +.++++|||||||+ .++ .+-+..+++.+-
T Consensus 137 ~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~-~l~~~~~~~~i~~~lgf~~~~~~~ 210 (1054)
T 1gku_B 137 YHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDA-ILKASKNVDKLLHLLGFHYDLKTK 210 (1054)
T ss_dssp CCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHH-HHTSTHHHHHHHHHTTEEEETTTT
T ss_pred EeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhh-hhhccccHHHHHHHhCcchhhhhh
Confidence 33221 12233 89999999999987654 45899999999994 443 122222222221
Q ss_pred hcCCCceEEEeccCCCHH-H-HHHHHhhcCCCcceeEEEecCCCccceeeceehhHHHHHHHhccCCCCccccccccccC
Q 004875 165 LKKNDLRVVLMSATADIT-K-YRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (726)
Q Consensus 165 ~~~~~lklIlmSATl~~~-~-~~~~f~~~~~~~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~y~~ 242 (726)
....+.+++++|||+... . ...++..... +. +.... ...-.+... +..
T Consensus 211 ~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~---i~---v~~~~-~~~~~i~~~-----------------------~~~ 260 (1054)
T 1gku_B 211 SWVGEARGCLMVSTATAKKGKKAELFRQLLN---FD---IGSSR-ITVRNVEDV-----------------------AVN 260 (1054)
T ss_dssp EEEECCSSEEEECCCCSCCCTTHHHHHHHHC---CC---CSCCE-ECCCCEEEE-----------------------EES
T ss_pred hcccCCceEEEEecCCCchhHHHHHhhcceE---EE---ccCcc-cCcCCceEE-----------------------Eec
Confidence 012356789999997543 1 1123322100 00 00000 000000000 100
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhh
Q 004875 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMK 322 (726)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~ 322 (726)
.... ..+..+.... ++++||||+++++++.+++.|+.. +.+..+||++. .+++
T Consensus 261 --------~~k~--------~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~~~-----~~l~ 313 (1054)
T 1gku_B 261 --------DESI--------STLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK---FRIGIVTATKK-----GDYE 313 (1054)
T ss_dssp --------CCCT--------TTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS---SCEEECTTSSS-----HHHH
T ss_pred --------hhHH--------HHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEeccHH-----HHHH
Confidence 0000 1111222222 368999999999999999999854 88999999984 5567
Q ss_pred ccCCCc-EEEEE----cccccccccCCCe-eEEEeCCCc
Q 004875 323 ICKSHR-KVILA----TNIAESSVTIPKV-AYVIDSCRS 355 (726)
Q Consensus 323 ~f~~~r-kVlva----Tniae~GIdip~v-~~VId~G~~ 355 (726)
.|++|+ +|||| ||++++|||+|+| ++||+.|.+
T Consensus 314 ~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 314 KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 888888 99999 9999999999995 999996665
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=3.1e-27 Score=273.31 Aligned_cols=319 Identities=14% Similarity=0.125 Sum_probs=173.8
Q ss_pred CCCcHHHHHHHHHHHHc-----CCcEEEEcCCCChHhHHHHHHH---Hhc--------CCCcEEEecchHHHHHHHHHHH
Q 004875 25 SLPVMSLREKIVEKVLE-----NRVTLIVGETGCGKSSQVPQFL---LAE--------NMEPILCTQPRRFAVVAVAKMV 88 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~-----~~~vii~a~TGSGKTt~ip~~l---le~--------~~~~Iivt~Prrlaa~~~a~~v 88 (726)
...++++|.++++.+.+ +++++++++||||||.++..++ +.. ...+++++.|++.++.+.....
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 45789999999998875 4679999999999996654443 232 3357888888887777766221
Q ss_pred HhhcCCccCCeeeeeeccccccCCCCeEEEEChHHHHHHHHh----cCCCCCceeEEEEcccccccccccHHHHHHHHHH
Q 004875 89 AKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRD----RGLNALKYKVIILDEVHERSVESDLVLVCVKQLL 164 (726)
Q Consensus 89 a~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~----~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~ 164 (726)
.. .+|..++.. .........+|+|+|++.|...... ..+...++++||||||| |....+ ...++.++
T Consensus 256 ~~----~~~~~~~~~--~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il 326 (590)
T 3h1t_A 256 FT----PFGDARHKI--EGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREIL 326 (590)
T ss_dssp CT----TTCSSEEEC--CC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHH
T ss_pred HH----hcchhhhhh--hccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHH
Confidence 12 233333322 1223346789999999999876531 22334579999999999 665432 12334445
Q ss_pred hcCCCceEEEeccCCC---HHHHHHHHhhcCCC------------cceeEEEecCCCccceeeceehhHHHHHHHhccCC
Q 004875 165 LKKNDLRVVLMSATAD---ITKYRDYFRDLGRG------------ERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDH 229 (726)
Q Consensus 165 ~~~~~lklIlmSATl~---~~~~~~~f~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~ 229 (726)
...+..++|+||||+. ......+|+..... .+..+..+........+... ....+..
T Consensus 327 ~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~---- 398 (590)
T 3h1t_A 327 EYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPS----KGDVDRF---- 398 (590)
T ss_dssp HHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred HhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccc----ccccccc----
Confidence 5556678999999974 23455666431000 00011111000000000000 0000000
Q ss_pred CCccccccccccCCCCCCccccccCh-----hHHHHHHHHHH-HHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCC--
Q 004875 230 GMTSELSSLRYCSGPSPSMANAEIKP-----EVHKLIHDLVL-HIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-- 301 (726)
Q Consensus 230 ~~~~~~~~~~y~~~~~~~~~~~~~~~-----~~~~li~~lv~-~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~-- 301 (726)
.+.. ....+....... .....+.+.+. .+.... ..+++||||+++++++.+++.|.....
T Consensus 399 ---~~~~-------~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~--~~~k~lVF~~~~~~a~~l~~~L~~~~~~~ 466 (590)
T 3h1t_A 399 ---GREI-------PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTD--RFAKTIVFCVDQEHADEMRRALNNLNSDL 466 (590)
T ss_dssp --------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHC--TTSEEEEEESSHHHHHHHHHHHHHHTHHH
T ss_pred ---cccc-------ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcC--CCccEEEEECCHHHHHHHHHHHHHhhhhh
Confidence 0000 000000000000 01122222222 222222 247999999999999999999964321
Q ss_pred ----CcEEEEecCCCCHHHHHHHhhccCCCc-E---EEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEe
Q 004875 302 ----FFKVHILHSSVDTEQALMAMKICKSHR-K---VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVW 373 (726)
Q Consensus 302 ----~~~v~~lh~~l~~~er~~~~~~f~~~r-k---VlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~ 373 (726)
.-.+..+||.++ ++|..+++.|+++. + |++||+++++|||+|++++||. |+++.+.
T Consensus 467 ~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~--------~~~~~s~------- 530 (590)
T 3h1t_A 467 SRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL--------ARVVNSM------- 530 (590)
T ss_dssp HTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE--------ESCCCCH-------
T ss_pred hccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE--------EecCCCh-------
Confidence 123778899875 36888999998865 4 8999999999999999999998 8888754
Q ss_pred ecHHhHHHHcCCCCCCCC
Q 004875 374 VSQSQAEQRRGRTGRTCD 391 (726)
Q Consensus 374 iS~a~~~QR~GRaGR~~~ 391 (726)
..+.||+||+||..+
T Consensus 531 ---~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 531 ---SEFKQIVGRGTRLRE 545 (590)
T ss_dssp ---HHHHHHHTTSCCCBG
T ss_pred ---HHHHHHHhhhcccCc
Confidence 455999999999865
No 51
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=4.8e-26 Score=262.48 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=91.2
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEcccccccccCC--------CeeE
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIP--------KVAY 348 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae~GIdip--------~v~~ 348 (726)
.++||||++++.++.+++.|.. .++.+..+||++...++..+.+.++.+ +|+||||+|++|+||+ ++.+
T Consensus 433 ~pvLVft~s~~~se~Ls~~L~~--~gi~~~vLhg~~~~rEr~ii~~ag~~g-~VlIATdmAgRG~DI~l~~~V~~~ggl~ 509 (844)
T 1tf5_A 433 QPVLVGTVAVETSELISKLLKN--KGIPHQVLNAKNHEREAQIIEEAGQKG-AVTIATNMAGRGTDIKLGEGVKELGGLA 509 (844)
T ss_dssp CCEEEEESCHHHHHHHHHHHHT--TTCCCEEECSSCHHHHHHHHTTTTSTT-CEEEEETTSSTTCCCCCCTTSGGGTSEE
T ss_pred CcEEEEECCHHHHHHHHHHHHH--CCCCEEEeeCCccHHHHHHHHHcCCCC-eEEEeCCccccCcCccccchhhhcCCcE
Confidence 5899999999999999999995 458889999999888887666666544 7999999999999999 8999
Q ss_pred EEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 349 VIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 349 VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
||+ ||.+.+...| .||+||+||. .+|.++.+++.++
T Consensus 510 VIn--------~d~p~s~r~y----------~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 510 VVG--------TERHESRRID----------NQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp EEE--------SSCCSSHHHH----------HHHHTTSSGGGCCEEEEEEEETTS
T ss_pred EEE--------ecCCCCHHHH----------HhhcCccccCCCCCeEEEEecHHH
Confidence 999 9988855555 9999999999 8999999988654
No 52
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=234.87 Aligned_cols=165 Identities=38% Similarity=0.640 Sum_probs=149.1
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----C---CCcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N---MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----~---~~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
+..+|++++|.++++.+.++++++++||||||||++++.++++. + ...++++.|++.++.+++++++..++..
T Consensus 57 ~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 57 RELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 35689999999999999999999999999999999998887653 1 1378999999999999999999999999
Q ss_pred cCCeeeeeeccccccC-CCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 96 LGGEVGYHIGHSKHLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 96 lg~~Vgy~v~~~~~~~-~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
+|..+||.++++.... .+++|+|+|||+|++.+... +.++++|||||||+|+++.|+.+..++.+...+++.|+|+
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~---l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 137 PGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG---IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp TTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHC---CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred cCceEEEeechhhccCCCCCeEEEECHHHHHHHHHhh---hcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEE
Confidence 9999999998887664 67999999999999998763 5699999999999988999999999999999889999999
Q ss_pred eccCCCHHHHHHHHhh
Q 004875 175 MSATADITKYRDYFRD 190 (726)
Q Consensus 175 mSATl~~~~~~~~f~~ 190 (726)
||||++.+.+.+||+.
T Consensus 214 ~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 214 MSATIDTSMFCEYFFN 229 (235)
T ss_dssp EECSSCCHHHHHHTTS
T ss_pred EecCCCHHHHHHHcCC
Confidence 9999999999999975
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=4.8e-25 Score=253.47 Aligned_cols=105 Identities=20% Similarity=0.171 Sum_probs=90.9
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEcccccccccCCC-----------
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPK----------- 345 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae~GIdip~----------- 345 (726)
.++||||++++.++.+++.|.. .++.+..+||.....++..+.+.|+.| .|+||||+|++|+||+.
T Consensus 442 qpvLVft~sie~se~Ls~~L~~--~gi~~~vLnak~~~rEa~iia~agr~G-~VtIATnmAgRGtDI~l~gn~~~~~~~~ 518 (853)
T 2fsf_A 442 QPVLVGTISIEKSELVSNELTK--AGIKHNVLNAKFHANEAAIVAQAGYPA-AVTIATNMAGRGTDIVLGGSWQAEVAAL 518 (853)
T ss_dssp CCEEEEESSHHHHHHHHHHHHH--TTCCCEECCTTCHHHHHHHHHTTTSTT-CEEEEESCCSSCSCCCTTCCHHHHHHHC
T ss_pred CCEEEEECcHHHHHHHHHHHHH--CCCCEEEecCChhHHHHHHHHhcCCCC-eEEEecccccCCcCccCCCchHhhhhhc
Confidence 5899999999999999999985 458888999998888888888888776 69999999999999997
Q ss_pred ---------------------e-----eEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEee
Q 004875 346 ---------------------V-----AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLV 398 (726)
Q Consensus 346 ---------------------v-----~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~ 398 (726)
| .+||+ |+.+.+. ..+.||+||+||. .||.++.++
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te~pes~----------riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 519 ENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TERHESR----------RIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SSCCSSH----------HHHHHHHTTSSGGGCCEEEEEEE
T ss_pred ccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------ccCCCCH----------HHHHhhccccccCCCCeeEEEEe
Confidence 4 69999 8888744 4559999999999 899998888
Q ss_pred chhh
Q 004875 399 TKSF 402 (726)
Q Consensus 399 s~~~ 402 (726)
+.++
T Consensus 581 s~eD 584 (853)
T 2fsf_A 581 SMED 584 (853)
T ss_dssp ETTS
T ss_pred cccH
Confidence 7654
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=1.8e-24 Score=248.84 Aligned_cols=341 Identities=16% Similarity=0.136 Sum_probs=198.4
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHH--HHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~i--p~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
+..+++|...+..+.+|+ |..++||+|||..+ |.++.......+.|+.|.+.+|.+.++.+.... ..+|-.||..
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~-~~lGLsv~~i 186 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVH-RFLGLQVGVI 186 (922)
T ss_dssp CCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH-HHTTCCEEEC
T ss_pred CCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHH-hhcCCeEEEE
Confidence 456899999999999887 99999999999554 443322222344455555555555555443321 1234444443
Q ss_pred eccc----cccCCCCeEEEEChHHH-HHHHHhc------CCCCCceeEEEEcccccccc-c---------------ccHH
Q 004875 104 IGHS----KHLSERSKIVFKTAGVL-LDEMRDR------GLNALKYKVIILDEVHERSV-E---------------SDLV 156 (726)
Q Consensus 104 v~~~----~~~~~~~~Iiv~T~g~L-l~~l~~~------~l~l~~~~~VIIDEaHeR~~-~---------------~d~l 156 (726)
++.. ....-.++|+|+||+.| .+.+... .+.+.++.++|||||| +++ + ++|.
T Consensus 187 ~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaD-smLiDeartPLiiSg~~~~~~~~y 265 (922)
T 1nkt_A 187 LATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD-SILIDEARTPLIISGPADGASNWY 265 (922)
T ss_dssp CTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH-HHHTTGGGSCEEEEEECCCCHHHH
T ss_pred eCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChH-HHHHhcCccceeecCCCCcchhHH
Confidence 3321 11122479999999999 6666543 2445689999999999 454 3 2454
Q ss_pred HHHHHHHHhcC---------CCceEE-----------------EeccCCCH--HHHH-----H-HHhhcCCCcc---eeE
Q 004875 157 LVCVKQLLLKK---------NDLRVV-----------------LMSATADI--TKYR-----D-YFRDLGRGER---VEV 199 (726)
Q Consensus 157 l~~lk~l~~~~---------~~lklI-----------------lmSATl~~--~~~~-----~-~f~~~~~~~~---~~v 199 (726)
..+-+.+.... ++.++. +.|||... ..+. . +|.. ...+- -.+
T Consensus 266 ~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~-d~dYiV~dg~v 344 (922)
T 1nkt_A 266 TEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR-DKDYIVRDGEV 344 (922)
T ss_dssp HHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB-TTTEEECSSCE
T ss_pred HHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc-ccceeeecCce
Confidence 44444333333 456777 88999642 2221 1 1211 00000 011
Q ss_pred EEecC---C------------------------Ccccee-ecee-hh-----------------HHHHHHHhccCCCCcc
Q 004875 200 LAIPS---T------------------------NQRTIF-QRRV-SY-----------------LEQVTELLGVDHGMTS 233 (726)
Q Consensus 200 ~~~~~---~------------------------~~~~~~-~~~~-~y-----------------l~~~~~~~~~~~~~~~ 233 (726)
+.+.. + ...... .+.. .| .++..+.++.+ .
T Consensus 345 viVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~----v 420 (922)
T 1nkt_A 345 LIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG----V 420 (922)
T ss_dssp EEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE----E
T ss_pred EEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC----e
Confidence 11110 0 000000 0110 11 12233333311 0
Q ss_pred ccccccccCCC--CCCccccccChhHHHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCC
Q 004875 234 ELSSLRYCSGP--SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS 311 (726)
Q Consensus 234 ~~~~~~y~~~~--~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~ 311 (726)
-....+..... .++.... ......+.+.+.+...+.. +.++|||+++.+.++.+++.|... ++.+..+||.
T Consensus 421 v~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~----gqpvLVft~Sie~sE~Ls~~L~~~--Gi~~~vLnak 493 (922)
T 1nkt_A 421 VSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAK----GQPVLIGTTSVERSEYLSRQFTKR--RIPHNVLNAK 493 (922)
T ss_dssp EECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHT--TCCCEEECSS
T ss_pred EEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhc----CCcEEEEECCHHHHHHHHHHHHHC--CCCEEEecCC
Confidence 00000000000 0000101 1122334444444433322 258999999999999999999854 5888899999
Q ss_pred CCHHHHHHHhhccCCCcEEEEEcccccccccCCCe---------------------------------------------
Q 004875 312 VDTEQALMAMKICKSHRKVILATNIAESSVTIPKV--------------------------------------------- 346 (726)
Q Consensus 312 l~~~er~~~~~~f~~~rkVlvaTniae~GIdip~v--------------------------------------------- 346 (726)
....++..+.+.|+.| .|+||||+|++|+||+.+
T Consensus 494 ~~~rEa~iia~agr~G-~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG-GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp CHHHHHHHHHTTTSTT-CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhHHHHHHHHhcCCCC-eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 8777777777777766 799999999999999964
Q ss_pred -------eEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 347 -------AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 347 -------~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
.+||+ |+.+.+. ..+.||+||+||. .||.+..+++.+
T Consensus 573 ~V~~~GGlhVI~--------te~pes~----------riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 573 EVIEAGGLYVLG--------TERHESR----------RIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHHTTSEEEEE--------CSCCSSH----------HHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHHhcCCcEEEe--------ccCCCCH----------HHHHHHhcccccCCCCeeEEEEechh
Confidence 59999 8888744 4459999999999 789998888754
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=6e-24 Score=212.85 Aligned_cols=165 Identities=21% Similarity=0.245 Sum_probs=135.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
++++||||+++.+++.+++.|... ++.+..+||++++++|..+++.|+++. +|||||+++++|||+|++++||+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~--- 105 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH--- 105 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE---
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE---
Confidence 369999999999999999999853 588999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh--------------HhhccCCCCCcccccCh
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF--------------FGTLEDHECPAILRLSL 419 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~--------------~~~l~~~~~pei~r~~L 419 (726)
||++. |.++|.||+|||||. ++|.||.+|++.+ +..+.....||+.+..+
T Consensus 106 -----~~~p~----------~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~~~~~ 170 (212)
T 3eaq_A 106 -----YRLPD----------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKW 170 (212)
T ss_dssp -----SSCCS----------SHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHHHHHH
T ss_pred -----CCCCc----------CHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHHHHHH
Confidence 88776 556669999999999 5899999999876 23344556678888889
Q ss_pred HHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHH
Q 004875 420 RLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLL 460 (726)
Q Consensus 420 ~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L 460 (726)
..+++.++............+..+++++|+++.+..|+..|
T Consensus 171 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 171 RHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp HHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 99988886433222222333444678889999999998776
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.89 E-value=4.4e-22 Score=225.43 Aligned_cols=344 Identities=14% Similarity=0.085 Sum_probs=188.3
Q ss_pred CCCcHHHHHHHHHHH----HcCCcEEEEcCCCChHhHHHHHHHHh---c-CCCcEEEecchHHHHHHHHHHHHhhcCCcc
Q 004875 25 SLPVMSLREKIVEKV----LENRVTLIVGETGCGKSSQVPQFLLA---E-NMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i----~~~~~vii~a~TGSGKTt~ip~~lle---~-~~~~Iivt~Prrlaa~~~a~~va~~~~~~l 96 (726)
...++++|.++++.+ ..++.++++.+||+|||.++..++.. . ...+++++.|..++ .+..+.+.+...
T Consensus 35 ~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~-~qw~~e~~~~~~--- 110 (500)
T 1z63_A 35 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVL-KNWEEELSKFAP--- 110 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTH-HHHHHHHHHHCT---
T ss_pred hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHH-HHHHHHHHHHCC---
Confidence 346899999998876 45789999999999999765554432 2 22456666676654 555555554332
Q ss_pred CCeeeeeeccc-cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 97 GGEVGYHIGHS-KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 97 g~~Vgy~v~~~-~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
+..+....+.. .......+|+++|++++.+...- ...++++||+|||| +..+.... ..+.+.. -+..+.+++
T Consensus 111 ~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~l---~~~~~~~vIvDEaH-~~kn~~~~--~~~~l~~-l~~~~~l~L 183 (500)
T 1z63_A 111 HLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTRL---KEVEWKYIVIDEAQ-NIKNPQTK--IFKAVKE-LKSKYRIAL 183 (500)
T ss_dssp TSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHHH---HTCCEEEEEEETGG-GGSCTTSH--HHHHHHT-SCEEEEEEE
T ss_pred CceEEEEecCchhccccCCcEEEeeHHHHhccchh---cCCCcCEEEEeCcc-ccCCHhHH--HHHHHHh-hccCcEEEE
Confidence 11122111111 11224578999999999765432 12379999999999 44443311 1222222 234578999
Q ss_pred ccCCCHHHHHHHHh---hcCCC-------------------------------cceeEEEec-------CCCccceeece
Q 004875 176 SATADITKYRDYFR---DLGRG-------------------------------ERVEVLAIP-------STNQRTIFQRR 214 (726)
Q Consensus 176 SATl~~~~~~~~f~---~~~~~-------------------------------~~~~v~~~~-------~~~~~~~~~~~ 214 (726)
|||+-.+...+++. .+... .+..+.... .-+......+.
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~ 263 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVY 263 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEE
Confidence 99983332222221 11000 000000000 00000000000
Q ss_pred e--------hhHHHHHHHhccCCCCcccc---------cc-ccccCCCCCC--ccccccChhHHHHHHHHHHHHHhhCCC
Q 004875 215 V--------SYLEQVTELLGVDHGMTSEL---------SS-LRYCSGPSPS--MANAEIKPEVHKLIHDLVLHIHKNESD 274 (726)
Q Consensus 215 ~--------~yl~~~~~~~~~~~~~~~~~---------~~-~~y~~~~~~~--~~~~~~~~~~~~li~~lv~~i~~~~~~ 274 (726)
+ .|-................. .. ...+..+.-. .............+.+++.....
T Consensus 264 ~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~---- 339 (500)
T 1z63_A 264 CNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALD---- 339 (500)
T ss_dssp ECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHT----
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHc----
Confidence 0 01000000000000000000 00 0000000000 00000001111222233333221
Q ss_pred CCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC-c-E-EEEEcccccccccCCCeeEEEe
Q 004875 275 IEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH-R-K-VILATNIAESSVTIPKVAYVID 351 (726)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~-r-k-VlvaTniae~GIdip~v~~VId 351 (726)
.+.++|||+.....++.+.+.|... .++.+..+||+++.++|.++++.|+++ . + +|+||+++++|+|+|++++||.
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~ 418 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKE-LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH 418 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHH-HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHh-hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE
Confidence 2369999999999999999998742 136678899999999999999999876 3 3 8999999999999999999999
Q ss_pred CCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCC---CceEEEeechhh
Q 004875 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSF 402 (726)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~~ 402 (726)
||++.+...+ .||+||++|.+ +..+|+|+++..
T Consensus 419 --------~d~~~~~~~~----------~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 419 --------FDRWWNPAVE----------DQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp --------SSCCSCC-------------CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred --------eCCCCCcchH----------HHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999877777 99999999983 445788887653
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.89 E-value=6.5e-23 Score=248.30 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=92.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC---cEEEEEcccccccccCCCeeEEEeC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH---RKVILATNIAESSVTIPKVAYVIDS 352 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~---rkVlvaTniae~GIdip~v~~VId~ 352 (726)
++++||||+++..++.+++.|... .++.+..+||+++..+|..+++.|+++ .+|||||+++++|+|+|++++||+
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~-~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~- 580 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRER-EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM- 580 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTT-TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC-
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE-
Confidence 479999999999999999999843 258899999999999999999999876 399999999999999999999999
Q ss_pred CCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCc--eEEEeechh
Q 004875 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDG--QVYRLVTKS 401 (726)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G--~~~~L~s~~ 401 (726)
||++.+...| .||+||+||. +.| .+|+++.+.
T Consensus 581 -------~d~p~~~~~~----------~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 581 -------FDLPFNPDLL----------EQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp -------SSCCSSHHHH----------HHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred -------ecCCCCHHHH----------HHHhhccccCCCCceEEEEEecCCC
Confidence 9998755555 9999999998 344 466666554
No 58
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=2.7e-23 Score=218.25 Aligned_cols=170 Identities=21% Similarity=0.236 Sum_probs=136.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
++++||||+++++++.+++.|... ++.+..+||+|++.+|..+++.|++|. +||||||++++|||+|++++||+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--- 102 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH--- 102 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE---
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE---
Confidence 379999999999999999999854 588999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh--------------HhhccCCCCCcccccCh
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF--------------FGTLEDHECPAILRLSL 419 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~--------------~~~l~~~~~pei~r~~L 419 (726)
||.+.+.. +|.||+|||||. ++|.||.+|++.+ +..+...+.|||.+..+
T Consensus 103 -----~d~p~s~~----------~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~ 167 (300)
T 3i32_A 103 -----YRMPDRAE----------AYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKW 167 (300)
T ss_dssp -----SSCCSSTT----------HHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHH
T ss_pred -----cCCCCCHH----------HHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHH
Confidence 88877554 459999999999 6899999999765 33355566788999999
Q ss_pred HHHHHHHhhhhcccCCChhhhcccCCCCCCHHHHHHHHHHHHHcCc
Q 004875 420 RLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRA 465 (726)
Q Consensus 420 ~~~iL~l~~~~~~~l~~~~~~~~~~l~pP~~~~i~~al~~L~~lga 465 (726)
..+++.++..+...+.....+..+++++|+.+.+..|+..|.....
T Consensus 168 ~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 168 RHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp HHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 9999988533222222222333466788999999999999966554
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=3.8e-21 Score=231.44 Aligned_cols=333 Identities=16% Similarity=0.180 Sum_probs=192.4
Q ss_pred CCcHHHHHHHHHHHHc--------------CCcEEEEcCCCChHhHHHHHH---HHhcC-CCcEEEecchHHHHHHHHHH
Q 004875 26 LPVMSLREKIVEKVLE--------------NRVTLIVGETGCGKSSQVPQF---LLAEN-MEPILCTQPRRFAVVAVAKM 87 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~--------------~~~vii~a~TGSGKTt~ip~~---lle~~-~~~Iivt~Prrlaa~~~a~~ 87 (726)
..++++|.++++.+.+ +++.+++++||||||..+... +...+ ..+++++.||+.++.|..+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 4578999999998865 368999999999999554222 21212 24788888988888888777
Q ss_pred HHhhcCCccCCeeeeeec-ccccc-CCCCeEEEEChHHHHHHHHhcC-C-CCCceeEEEEcccccccccccHHHHHHHHH
Q 004875 88 VAKGRNCELGGEVGYHIG-HSKHL-SERSKIVFKTAGVLLDEMRDRG-L-NALKYKVIILDEVHERSVESDLVLVCVKQL 163 (726)
Q Consensus 88 va~~~~~~lg~~Vgy~v~-~~~~~-~~~~~Iiv~T~g~Ll~~l~~~~-l-~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l 163 (726)
+.......+.+ +.... ..... ....+|+|+|++.|...+.... + .+.++.+||+|||| |+...++ .+.+
T Consensus 350 f~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I 422 (1038)
T 2w00_A 350 YQRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNL 422 (1038)
T ss_dssp HHTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHH
T ss_pred HHHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHH
Confidence 66543222211 01100 11111 3568999999999998776432 1 23478999999999 7765443 3444
Q ss_pred HhcCCCceEEEeccCCCH-------HHHHHHHhhcCCCcceeEEEecCC-CccceeeceehhHH---HHHHHhccCCCCc
Q 004875 164 LLKKNDLRVVLMSATADI-------TKYRDYFRDLGRGERVEVLAIPST-NQRTIFQRRVSYLE---QVTELLGVDHGMT 232 (726)
Q Consensus 164 ~~~~~~lklIlmSATl~~-------~~~~~~f~~~~~~~~~~v~~~~~~-~~~~~~~~~~~yl~---~~~~~~~~~~~~~ 232 (726)
....++.+++++|||+.. .....+|+.. +....+... ..+...++.+.|.. ... ....+ ..
T Consensus 423 ~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-----i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~-~~~~e--~d 494 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFPENALGSETTASVFGRE-----LHSYVITDAIRDEKVLKFKVDYNDVRPQFK-SLETE--TD 494 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-----EEEECHHHHHHHTSSCCEEEEECCCCGGGH-HHHTC--CC
T ss_pred HHhCCcccEEEEeCCccccccchhhhHHHHHhCCe-----eEeecHHHHHhCCCcCCeEEEEEeccchhh-hcccc--cc
Confidence 455677899999999742 2456677531 111000000 00011111111110 000 00000 00
Q ss_pred cccccccccCCCCCCccccccChh-HHHHHHHHHHHHHhhCC-----CCCCcEEEEcCcHHHHHHHHHHhcCCC------
Q 004875 233 SELSSLRYCSGPSPSMANAEIKPE-VHKLIHDLVLHIHKNES-----DIEKSILVFLPTYYALEQQWHLMKPLS------ 300 (726)
Q Consensus 233 ~~~~~~~y~~~~~~~~~~~~~~~~-~~~li~~lv~~i~~~~~-----~~~~~iLVF~~~~~~i~~l~~~L~~~~------ 300 (726)
. ..+...... .....+. ...++..++.+...... ..++++||||+++.++..+++.|....
T Consensus 495 ~----~~~~~i~~~---~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~ 567 (1038)
T 2w00_A 495 E----KKLSAAENQ---QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANK 567 (1038)
T ss_dssp H----HHHHHTCST---TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred H----HHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccc
Confidence 0 000000000 0001111 12223334444433221 123589999999999999998886432
Q ss_pred ----CCcEE-EEecCC----------C----------CHH-----------------------------HHHHHhhccCC
Q 004875 301 ----SFFKV-HILHSS----------V----------DTE-----------------------------QALMAMKICKS 326 (726)
Q Consensus 301 ----~~~~v-~~lh~~----------l----------~~~-----------------------------er~~~~~~f~~ 326 (726)
.++.+ ..+|++ + ++. +|..+++.|++
T Consensus 568 ~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~ 647 (1038)
T 2w00_A 568 SATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN 647 (1038)
T ss_dssp SSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT
T ss_pred ccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc
Confidence 22444 445542 2 221 36778889999
Q ss_pred Cc-EEEEEcccccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCCC-----ceEEEeec
Q 004875 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-----GQVYRLVT 399 (726)
Q Consensus 327 ~r-kVlvaTniae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~-----G~~~~L~s 399 (726)
+. +|||+|+++.+|+|+|.+.+ +. +|.|.+.. .++||+||+||..+ |.++-+..
T Consensus 648 g~i~ILIvvd~lltGfDiP~l~t-ly--------lDkpl~~~----------~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 648 QDIDLLIVVGMFLTGFDAPTLNT-LF--------VDKNLRYH----------GLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TSSSEEEESSTTSSSCCCTTEEE-EE--------EESCCCHH----------HHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CCCeEEEEcchHHhCcCcccccE-EE--------EccCCCcc----------ceeehhhccCcCCCCCCCcEEEEEccc
Confidence 98 99999999999999999955 44 78776544 45999999999954 55555444
No 60
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.5e-20 Score=222.15 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=95.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc----EEEEEcccccccccCCCeeEEEe
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR----KVILATNIAESSVTIPKVAYVID 351 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r----kVlvaTniae~GIdip~v~~VId 351 (726)
+.++|||+.....++.+.+.|... ++.+..+||+++..+|..+++.|+.+. .+|+||.++++|||++++++||.
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~ 649 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI 649 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE
Confidence 469999999999999999999743 578899999999999999999998643 59999999999999999999999
Q ss_pred CCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC---CCceEEEeechhhH
Q 004875 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFF 403 (726)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~---~~G~~~~L~s~~~~ 403 (726)
||++.+...+ .||.||++|. ++..+|+|+++..+
T Consensus 650 --------~D~~wnp~~~----------~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 650 --------FDSDWNPQAD----------LQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp --------SSCCSCSHHH----------HHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred --------ecCCCChhhH----------HHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 9999877666 9999999997 46779999987544
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.84 E-value=4.8e-19 Score=206.09 Aligned_cols=119 Identities=10% Similarity=0.144 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc----EEEEEcc
Q 004875 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR----KVILATN 335 (726)
Q Consensus 260 li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r----kVlvaTn 335 (726)
.+..++..+.... +.++|||+.....++.+.+.|.. .++.+..+||+++.++|.++++.|+++. .+|++|.
T Consensus 403 ~l~~ll~~~~~~~---~~k~lIFs~~~~~~~~l~~~l~~--~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 403 VLDYILAMTRTTT---SDKVVLVSNYTQTLDLFEKLCRN--RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp HHHHHHHHHHHHC---CCEEEEEESCHHHHHHHHHHHHH--HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred HHHHHHHHHhhcC---CCEEEEEEccHHHHHHHHHHHHH--CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 3444444443322 36999999999999999999874 3578899999999999999999998764 4899999
Q ss_pred cccccccCCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCCC---CceEEEeechh
Q 004875 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKS 401 (726)
Q Consensus 336 iae~GIdip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~ 401 (726)
++++|||++++++||. ||++.+...+ .||+||++|.+ +..+|+++++.
T Consensus 478 a~g~Glnl~~a~~Vi~--------~d~~wnp~~~----------~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVM--------FDPDWNPAND----------EQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp GSCTTCCCTTEEEEEE--------CSCCSSHHHH----------HHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCcccccCCEEEE--------ECCCCCccHH----------HHHHHhhhhcCCCCceEEEEEEECC
Confidence 9999999999999999 9999865555 99999999983 45688888864
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.81 E-value=1.5e-18 Score=195.89 Aligned_cols=105 Identities=20% Similarity=0.187 Sum_probs=88.1
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEcccccccccCC--------CeeE
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIP--------KVAY 348 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTniae~GIdip--------~v~~ 348 (726)
.++|||+++++.++.+++.|.. .++.+..+||+....++..+.+.++.+ .|+||||+|++|+||+ +..+
T Consensus 475 qpVLVFt~S~e~sE~Ls~~L~~--~Gi~~~vLhgkq~~rE~~ii~~ag~~g-~VtVATdmAgRGtDI~lg~~V~~~Gglh 551 (822)
T 3jux_A 475 QPVLVGTTSIEKSELLSSMLKK--KGIPHQVLNAKYHEKEAEIVAKAGQKG-MVTIATNMAGRGTDIKLGPGVAELGGLC 551 (822)
T ss_dssp CCEEEEESSHHHHHHHHHHHHT--TTCCCEEECSCHHHHHHHHHHHHHSTT-CEEEEETTTTTTCCCCCCTTTTTTTSCE
T ss_pred CCEEEEECCHHHHHHHHHHHHH--CCCCEEEeeCCchHHHHHHHHhCCCCC-eEEEEcchhhCCcCccCCcchhhcCCCE
Confidence 5899999999999999999985 458888999986666665555555544 6999999999999998 7779
Q ss_pred EEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhh
Q 004875 349 VIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (726)
Q Consensus 349 VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~ 402 (726)
||+ |+.|.+...+ .||+||+||. .+|.++.+++.++
T Consensus 552 VIn--------te~Pes~r~y----------~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 552 IIG--------TERHESRRID----------NQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEE--------SSCCSSHHHH----------HHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEe--------cCCCCCHHHH----------HHhhCccccCCCCeeEEEEechhH
Confidence 999 8888855555 9999999999 7899999988654
No 63
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.80 E-value=5.4e-18 Score=197.22 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=96.7
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCc
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~ 355 (726)
+++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|+.|. +|+|||+++++|+|+|++++||+
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~---- 513 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI---- 513 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----
T ss_pred CEEEEEECCHHHHHHHHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEE----
Confidence 69999999999999999999854 478889999999999999999999988 99999999999999999999999
Q ss_pred eeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechh
Q 004875 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (726)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~ 401 (726)
||.... ..|.|..+|.||+|||||.++|.|+.++++.
T Consensus 514 ----~d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 514 ----LDADKE-----GFLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp ----TTTTSC-----SGGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred ----eCCccc-----CCCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 664321 1134677889999999999999999999864
No 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=174.35 Aligned_cols=153 Identities=21% Similarity=0.189 Sum_probs=115.5
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----------CCCcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----------NMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----------~~~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
..+++|.++++.+.+++++++++|||||||..+...++.. ...+++++.|++.++.++++++......
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~- 120 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYK- 120 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCT-
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhccc-
Confidence 5689999999999999999999999999997655544331 3346888889898889998888775321
Q ss_pred cCCeeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCC
Q 004875 96 LGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (726)
Q Consensus 96 lg~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~ 169 (726)
+..++...+.. .....+.+|+|+||++|.+.+..+...+.++++||||||| +..+.++...+.+.+...+++
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~~ 198 (228)
T 3iuy_A 121 -GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDMEFEPQIRKILLDVRPD 198 (228)
T ss_dssp -TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHTTCHHHHHHHHHHSCSS
T ss_pred -CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-HHhccchHHHHHHHHHhCCcC
Confidence 22222222211 1123567999999999999888877777799999999999 666667776666666666778
Q ss_pred ceEEEeccCCCHH
Q 004875 170 LRVVLMSATADIT 182 (726)
Q Consensus 170 lklIlmSATl~~~ 182 (726)
.++++||||++.+
T Consensus 199 ~~~l~~SAT~~~~ 211 (228)
T 3iuy_A 199 RQTVMTSATWPDT 211 (228)
T ss_dssp CEEEEEESCCCHH
T ss_pred CeEEEEEeeCCHH
Confidence 9999999999754
No 65
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=176.65 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=116.5
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.++++|.++++.+.+++++++++|||||||+++..++++. ...+++++.|++.++.++++.+..... ..+..++
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~-~~~~~~~ 143 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS-SIGVQSA 143 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHG-GGTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhc-cCCeeEE
Confidence 5689999999999999999999999999998776666542 234688888998888888877655321 2233333
Q ss_pred eeeccc------cccCCCCeEEEEChHHHHHHHHh-cCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 004875 102 YHIGHS------KHLSERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 102 y~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl 174 (726)
...+.. .....+++|+|+||++|++.+.. ..+.+.++++||||||| +..+.++...+.+.+...+++.++++
T Consensus 144 ~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~~~l~ 222 (249)
T 3ber_A 144 VIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETEVDKILKVIPRDRKTFL 222 (249)
T ss_dssp EECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHSSCSSSEEEE
T ss_pred EEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHHHHHHHHhCCCCCeEEE
Confidence 333321 12245789999999999998876 44556789999999999 77777777776666555666899999
Q ss_pred eccCCCHH
Q 004875 175 MSATADIT 182 (726)
Q Consensus 175 mSATl~~~ 182 (726)
||||++.+
T Consensus 223 ~SAT~~~~ 230 (249)
T 3ber_A 223 FSATMTKK 230 (249)
T ss_dssp EESSCCHH
T ss_pred EeccCCHH
Confidence 99999754
No 66
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=5.3e-18 Score=168.33 Aligned_cols=155 Identities=21% Similarity=0.267 Sum_probs=114.4
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcC-----CCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~-----~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.++++|.++++.+.+++++++++|||||||..+...+++.. ..+++++.|++.++.++++.+........+..++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 46899999999999999999999999999977766665542 2368888888888888888776654321133333
Q ss_pred eeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 102 YHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 102 y~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
...+.. .......+|+|+||+.+.+.+..+...+.++++||||||| +..+.++...+.+.+...+++.++++|
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~l~~i~~~~~~~~~~l~~ 183 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD-KLLSQDFVQIMEDIILTLPKNRQILLY 183 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH-HHTSTTTHHHHHHHHHHSCTTCEEEEE
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH-HhHhhCcHHHHHHHHHhCCccceEEEE
Confidence 332222 1224578999999999999988776667799999999999 555656655444444444558899999
Q ss_pred ccCCCHH
Q 004875 176 SATADIT 182 (726)
Q Consensus 176 SATl~~~ 182 (726)
|||++.+
T Consensus 184 SAT~~~~ 190 (206)
T 1vec_A 184 SATFPLS 190 (206)
T ss_dssp ESCCCHH
T ss_pred EeeCCHH
Confidence 9999754
No 67
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.78 E-value=3e-18 Score=174.39 Aligned_cols=153 Identities=20% Similarity=0.263 Sum_probs=112.8
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
++++|.++++.+.+++++++++|||||||..+...+++. ...+++++.|++.++.++++.+.... ...+..++.
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~ 131 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG-DYMGATCHA 131 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh-hhcCceEEE
Confidence 689999999999999999999999999998877777654 23478888888888888888776543 222333332
Q ss_pred eecccc------cc-CCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 004875 103 HIGHSK------HL-SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (726)
Q Consensus 103 ~v~~~~------~~-~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlm 175 (726)
.++... .. ....+|+|+||+.|.+.+..+.+.+.++++||||||| +..+.++...+.+.+...+++.++|++
T Consensus 132 ~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~l~~i~~~~~~~~~~i~~ 210 (237)
T 3bor_A 132 CIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD-EMLSRGFKDQIYEIFQKLNTSIQVVLL 210 (237)
T ss_dssp ECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH-HHHHTTCHHHHHHHHHHSCTTCEEEEE
T ss_pred EECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch-HhhccCcHHHHHHHHHhCCCCCeEEEE
Confidence 222211 11 2337999999999999988776667789999999999 555555555554444445678999999
Q ss_pred ccCCCHH
Q 004875 176 SATADIT 182 (726)
Q Consensus 176 SATl~~~ 182 (726)
|||++.+
T Consensus 211 SAT~~~~ 217 (237)
T 3bor_A 211 SATMPTD 217 (237)
T ss_dssp CSSCCHH
T ss_pred EEecCHH
Confidence 9999754
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=177.91 Aligned_cols=153 Identities=21% Similarity=0.254 Sum_probs=113.9
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh---------cCCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---------ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle---------~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
++++|.++++.+.++++++++||||||||..+...+++ ....+++++.|++.++.++++.+..... ..+.
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-~~~~ 155 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT-HHVH 155 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT-TCCS
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh-hcCc
Confidence 78999999999999999999999999999765555443 1234688888888888888888766433 3344
Q ss_pred eeeeeecccc------ccCCCCeEEEEChHHHHHHHHhcC-CCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 004875 99 EVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 99 ~Vgy~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~-l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk 171 (726)
.++..++... ....+++|+|+|||++++.+.... +.+.++++||||||| +..+.++...+.+.+...+++.+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~q 234 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEEELKQIIKLLPTRRQ 234 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHHSCSSSE
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHHHHHHHHHhCCCCCe
Confidence 4444333221 112458999999999999887643 556689999999999 66666666655555555566789
Q ss_pred EEEeccCCCHH
Q 004875 172 VVLMSATADIT 182 (726)
Q Consensus 172 lIlmSATl~~~ 182 (726)
+++||||++.+
T Consensus 235 ~l~~SAT~~~~ 245 (262)
T 3ly5_A 235 TMLFSATQTRK 245 (262)
T ss_dssp EEEECSSCCHH
T ss_pred EEEEEecCCHH
Confidence 99999999754
No 69
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.77 E-value=8.9e-18 Score=169.06 Aligned_cols=154 Identities=22% Similarity=0.265 Sum_probs=113.3
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vg 101 (726)
.++++|.++++.+.+++++++++|||||||..+...+++. ...+++++.|++.++.++++.+..... ..+..++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~ 114 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF-HMDIKVH 114 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT-TSCCCEE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhc-ccCceEE
Confidence 4689999999999999999999999999998766666542 234788888988888888887765432 2232333
Q ss_pred eeecccc-----ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 102 YHIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 102 y~v~~~~-----~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
...+... .....++|+|+||+.|.+.+......+.++++||||||| +..+.++...+.+.+...+++.++++||
T Consensus 115 ~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~l~~i~~~~~~~~~~i~lS 193 (224)
T 1qde_A 115 ACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQIYQIFTLLPPTTQVVLLS 193 (224)
T ss_dssp EECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhhhHHHHHHHHHhCCccCeEEEEE
Confidence 2222111 112348999999999999988776667799999999999 5666666655555555556788999999
Q ss_pred cCCCHH
Q 004875 177 ATADIT 182 (726)
Q Consensus 177 ATl~~~ 182 (726)
||++.+
T Consensus 194 AT~~~~ 199 (224)
T 1qde_A 194 ATMPND 199 (224)
T ss_dssp SSCCHH
T ss_pred eecCHH
Confidence 999764
No 70
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.77 E-value=6.2e-18 Score=169.80 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=113.0
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCc---cCC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCE---LGG 98 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~---lg~ 98 (726)
.++++|.++++.+.+++++++++|||||||..+...+++. ...+++++.|++.++.++++.+....... .+.
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 105 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMI 105 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccce
Confidence 4689999999999999999999999999998776666654 23468888888888888887766543211 122
Q ss_pred eeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 004875 99 EVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (726)
Q Consensus 99 ~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lkl 172 (726)
.++...+.. .....+.+|+|+||++|.+.+..+.+.+.++++||||||| +..+.++...+.+.+...+++.++
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~l~~i~~~~~~~~~~ 184 (219)
T 1q0u_A 106 VARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD-LMLDMGFITDVDQIAARMPKDLQM 184 (219)
T ss_dssp CEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH-HHHHTTCHHHHHHHHHTSCTTCEE
T ss_pred EEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch-HHhhhChHHHHHHHHHhCCcccEE
Confidence 233222221 1223467899999999999988776667799999999999 555555554444444444567899
Q ss_pred EEeccCCCHH
Q 004875 173 VLMSATADIT 182 (726)
Q Consensus 173 IlmSATl~~~ 182 (726)
++||||++.+
T Consensus 185 l~~SAT~~~~ 194 (219)
T 1q0u_A 185 LVFSATIPEK 194 (219)
T ss_dssp EEEESCCCGG
T ss_pred EEEecCCCHH
Confidence 9999998653
No 71
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.76 E-value=8.6e-18 Score=166.84 Aligned_cols=152 Identities=20% Similarity=0.155 Sum_probs=113.6
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc--------CCCcEEEecchHHHHHHHHHHHHhhcCCccCC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--------NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~--------~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~ 98 (726)
.++++|.++++.+.+++++++++|||||||..+...+++. ...+++++.|++.++.++++.+...... .
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~---~ 99 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH---L 99 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT---S
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc---c
Confidence 5689999999999999999999999999998776666553 2347888899998889998888775432 1
Q ss_pred eeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 004875 99 EVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (726)
Q Consensus 99 ~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lkl 172 (726)
.++...+.. .....+.+|+|+||+.+.+.+..+...+.++++||+|||| +..+.++...+.+.+...+++.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~ 178 (207)
T 2gxq_A 100 KVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD-EMLSMGFEEEVEALLSATPPSRQT 178 (207)
T ss_dssp CEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH-HHHHTTCHHHHHHHHHTSCTTSEE
T ss_pred eEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh-HhhccchHHHHHHHHHhCCccCeE
Confidence 122221211 1112468999999999999988776667799999999999 555555554444444445568899
Q ss_pred EEeccCCCHH
Q 004875 173 VLMSATADIT 182 (726)
Q Consensus 173 IlmSATl~~~ 182 (726)
++||||++.+
T Consensus 179 i~~SAT~~~~ 188 (207)
T 2gxq_A 179 LLFSATLPSW 188 (207)
T ss_dssp EEECSSCCHH
T ss_pred EEEEEecCHH
Confidence 9999999753
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.76 E-value=5.7e-18 Score=172.90 Aligned_cols=153 Identities=18% Similarity=0.128 Sum_probs=112.3
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc----------CCCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----------NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~----------~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.+++|.++++.+.+++++++++|||||||..+...++.. ...+++++.|++.++.++.+.+..... ..+
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~ 130 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCR-ACR 130 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHh-hcC
Confidence 689999999999999999999999999997655554432 234677777888888888776654321 122
Q ss_pred Ceeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 004875 98 GEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 98 ~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk 171 (726)
..++...+.. .....+.+|+|+||++|++.+......+.++++||||||| +..+.++...+.+.+...+++.+
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~~~~i~~~~~~~~q 209 (242)
T 3fe2_A 131 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-RMLDMGFEPQIRKIVDQIRPDRQ 209 (242)
T ss_dssp CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-HHHHTTCHHHHHHHHTTSCSSCE
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-HHhhhCcHHHHHHHHHhCCccce
Confidence 2333322221 1123457999999999999998877777899999999999 66666666666555555567899
Q ss_pred EEEeccCCCHH
Q 004875 172 VVLMSATADIT 182 (726)
Q Consensus 172 lIlmSATl~~~ 182 (726)
+++||||++.+
T Consensus 210 ~~~~SAT~~~~ 220 (242)
T 3fe2_A 210 TLMWSATWPKE 220 (242)
T ss_dssp EEEEESCCCHH
T ss_pred EEEEEeecCHH
Confidence 99999999754
No 73
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.76 E-value=1.1e-17 Score=169.39 Aligned_cols=160 Identities=16% Similarity=0.105 Sum_probs=114.6
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
++++|.++++.+.+++++++++|||||||..+...+++. ...+++++.|++.++.++++.+........+..++.
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 689999999999999999999999999998766665543 234788888988888888888766432211333443
Q ss_pred eecccc-----ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccccc-HHHHHHHHHHhcCCCceEEEec
Q 004875 103 HIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 103 ~v~~~~-----~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d-~ll~~lk~l~~~~~~lklIlmS 176 (726)
..+... ....+.+|+|+||+.|.+.+..+.+.+.++++||||||| +..+.+ +...+.+.+...+++.+++++|
T Consensus 127 ~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD-KLLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp ECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH-HHHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred EeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch-HhhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 332211 123468999999999999888776667799999999999 555443 4443333333344578999999
Q ss_pred cCCCHHHHHHHHh
Q 004875 177 ATADITKYRDYFR 189 (726)
Q Consensus 177 ATl~~~~~~~~f~ 189 (726)
||++.+ +.+++.
T Consensus 206 AT~~~~-~~~~~~ 217 (230)
T 2oxc_A 206 ATYPEF-LANALT 217 (230)
T ss_dssp SCCCHH-HHHHHT
T ss_pred eccCHH-HHHHHH
Confidence 999755 444443
No 74
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.76 E-value=1.7e-17 Score=174.85 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=112.4
Q ss_pred CcHHHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHHHHhcCC-----CcEEEecchHHHHHHHHHHHHhhcCCccCCe
Q 004875 27 PVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~lle~~~-----~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~ 99 (726)
..+++|.++++.+..+ ++++++||||||||..+...+++... ..++++.|++.+|.+++..+........+..
T Consensus 114 ~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~ 193 (300)
T 3fmo_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 193 (300)
T ss_dssp SCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcE
Confidence 3568899999999987 99999999999999877766665422 2577778888888888877765433222334
Q ss_pred eeeeecccc---ccCCCCeEEEEChHHHHHHHHh-cCCCCCceeEEEEccccccccc-ccHHHHHHHHHHhcCCCceEEE
Q 004875 100 VGYHIGHSK---HLSERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 100 Vgy~v~~~~---~~~~~~~Iiv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHeR~~~-~d~ll~~lk~l~~~~~~lklIl 174 (726)
+++.++... ......+|+|+|||+|++.+.. +.+.+.++++||||||| +.++ ..+...+...+...+++.|+|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~~~~~~~~~~~~i~~~~~~~~q~i~ 272 (300)
T 3fmo_B 194 LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQMLL 272 (300)
T ss_dssp EEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHHHSTTHHHHHHHHHTTSCTTCEEEE
T ss_pred EEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHhhccCcHHHHHHHHHhCCCCCEEEE
Confidence 444444332 2244678999999999999865 44566799999999999 5655 3444444444444466799999
Q ss_pred eccCCCHH
Q 004875 175 MSATADIT 182 (726)
Q Consensus 175 mSATl~~~ 182 (726)
+|||++.+
T Consensus 273 ~SAT~~~~ 280 (300)
T 3fmo_B 273 FSATFEDS 280 (300)
T ss_dssp EESCCCHH
T ss_pred EeccCCHH
Confidence 99999754
No 75
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=168.15 Aligned_cols=154 Identities=19% Similarity=0.220 Sum_probs=112.5
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc---------CCCcEEEecchHHHHHHHHHHHHhhcCCccC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~---------~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg 97 (726)
.++++|.++++.+.+++++++++|||||||+++...+++. ...+++++.|++.++.++++.+.... ...+
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~ 125 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG-KNHD 125 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT-TTSS
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh-CCCC
Confidence 4689999999999999999999999999997766555432 23468888888888888888776543 2233
Q ss_pred Ceeeeeecccc-----ccCCCCeEEEEChHHHHHHHHhc-CCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 004875 98 GEVGYHIGHSK-----HLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (726)
Q Consensus 98 ~~Vgy~v~~~~-----~~~~~~~Iiv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk 171 (726)
..++...+... ....+.+|+|+||+.|++.+... .+.+.++++||||||| +..+.++...+.+.+...+++.+
T Consensus 126 ~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~~~~ 204 (236)
T 2pl3_A 126 FSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFADTMNAVIENLPKKRQ 204 (236)
T ss_dssp CCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTHHHHHHHHHTSCTTSE
T ss_pred eeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcHHHHHHHHHhCCCCCe
Confidence 33443332211 11246899999999999988764 3455699999999999 66666666555554445556889
Q ss_pred EEEeccCCCHH
Q 004875 172 VVLMSATADIT 182 (726)
Q Consensus 172 lIlmSATl~~~ 182 (726)
+++||||++.+
T Consensus 205 ~l~~SAT~~~~ 215 (236)
T 2pl3_A 205 TLLFSATQTKS 215 (236)
T ss_dssp EEEEESSCCHH
T ss_pred EEEEEeeCCHH
Confidence 99999999754
No 76
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=165.03 Aligned_cols=114 Identities=19% Similarity=0.238 Sum_probs=96.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
.+++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|+++. +|||||+++++|+|+|++++||+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--- 108 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN--- 108 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE---
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE---
Confidence 479999999999999999999854 578999999999999999999999988 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
||.+.... ...|..+|.||+|||||. .+|.|+.++++.+.
T Consensus 109 -----~d~p~~~~----~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 109 -----FDLPVKQG----EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149 (175)
T ss_dssp -----SSCCC--C----CSCCHHHHHHHHCBC----CCEEEEEEECGGGH
T ss_pred -----eCCCCCcc----ccCCHHHHHHHhcccccCCCCceEEEEEccchH
Confidence 88773221 124677789999999998 78999999997654
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.75 E-value=4e-18 Score=163.10 Aligned_cols=108 Identities=23% Similarity=0.325 Sum_probs=98.0
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCc
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~ 355 (726)
+++||||+++.+++.+++.|... ++.+..+||++++.+|..+++.|+++. +|||||+++++|+|+|++++||+
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~---- 109 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN---- 109 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----
T ss_pred CcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE----
Confidence 68999999999999999999854 588999999999999999999999988 99999999999999999999999
Q ss_pred eeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
||++. |..+|.||+||+||. ++|.|+.++++.+..
T Consensus 110 ----~~~p~----------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 110 ----YDLPL----------EKESYVHRTGRTGRAGNKGKAISFVTAFEKR 145 (163)
T ss_dssp ----SSCCS----------SHHHHHHHTTTSSCTTCCEEEEEEECGGGHH
T ss_pred ----eCCCC----------CHHHHHHhccccCcCCCCceEEEEecHHHHH
Confidence 88876 445559999999999 689999999976543
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.75 E-value=3.8e-18 Score=163.59 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=95.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
.+++||||++++.++.+++.|... ++.+..+||+++..+|..+++.|++++ +|||||+++++|+|+|++++||+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~--- 104 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN--- 104 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE---
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE---
Confidence 369999999999999999999854 578999999999999999999999988 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHh
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~ 404 (726)
||++.+...| .||+|||||. ++|.|+.++++.+..
T Consensus 105 -----~~~p~~~~~~----------~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 105 -----YDLPANKENY----------IHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp -----SSCCSSGGGG----------GGSSCSCC-----CEEEEEEETTTHH
T ss_pred -----eCCCCCHHHH----------HHHhcccccCCCCceEEEEEcchHHH
Confidence 8988766666 9999999999 789999999976543
No 79
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.74 E-value=2.6e-17 Score=165.26 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc-----CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~-----~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
++++|.++++.+.+++++++++|||||||..+...+++. +..+++++.|++.++.++++.+........+..++.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 116 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 116 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 789999999999999999999999999998777776654 223788888988888888887766432211333443
Q ss_pred eecccc-------ccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEccccccccc-ccHHHHHHHHHHhcCCCceEEE
Q 004875 103 HIGHSK-------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRVVL 174 (726)
Q Consensus 103 ~v~~~~-------~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~-~d~ll~~lk~l~~~~~~lklIl 174 (726)
..+... ......+|+|+||+.+.+.+......+.++++||||||| +..+ .++...+.+.+...+++.++++
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~i~~~~~~~~~~i~ 195 (220)
T 1t6n_A 117 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD-KMLEQLDMRRDVQEIFRMTPHEKQVMM 195 (220)
T ss_dssp ESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH-HHHSSHHHHHHHHHHHHTSCSSSEEEE
T ss_pred EeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH-HHhcccCcHHHHHHHHHhCCCcCeEEE
Confidence 322211 112346999999999999988776667799999999999 4443 3444333333333445789999
Q ss_pred eccCCCHH
Q 004875 175 MSATADIT 182 (726)
Q Consensus 175 mSATl~~~ 182 (726)
+|||++.+
T Consensus 196 ~SAT~~~~ 203 (220)
T 1t6n_A 196 FSATLSKE 203 (220)
T ss_dssp EESCCCTT
T ss_pred EEeecCHH
Confidence 99998643
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.74 E-value=4.7e-17 Score=166.23 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=113.0
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc------CCCcEEEecchHHHHHHHHHHHHhhcCCccCCee
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE------NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~------~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~V 100 (726)
.++++|.++++.+.+++++++++|||||||..+...+++. ...+++++.|++.++.++++.+..... ..|..+
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~ 129 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISE-GTGFRI 129 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTT-TSCCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhc-ccCceE
Confidence 3789999999999999999999999999997665555432 223688888888888888887765432 223323
Q ss_pred eeeec-------cccccCCCCeEEEEChHHHHHHHHhc--CCCCCceeEEEEccccccccc---ccHHHHHHHHHHhc-C
Q 004875 101 GYHIG-------HSKHLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSVE---SDLVLVCVKQLLLK-K 167 (726)
Q Consensus 101 gy~v~-------~~~~~~~~~~Iiv~T~g~Ll~~l~~~--~l~l~~~~~VIIDEaHeR~~~---~d~ll~~lk~l~~~-~ 167 (726)
+...+ .......+.+|+|+||++|...+... .+.+.++++|||||||+ ..+ .++...+.+.+... .
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~~~~i~~~~~~ 208 (245)
T 3dkp_A 130 HMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK-LFEDGKTGFRDQLASIFLACTS 208 (245)
T ss_dssp ECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH-HHHHC--CHHHHHHHHHHHCCC
T ss_pred EEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH-hcccccccHHHHHHHHHHhcCC
Confidence 22211 12233567899999999999998775 35566999999999994 444 35665555554433 3
Q ss_pred CCceEEEeccCCCHHHHHHHHh
Q 004875 168 NDLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 168 ~~lklIlmSATl~~~~~~~~f~ 189 (726)
++.++++||||++.+ +.++..
T Consensus 209 ~~~~~~~~SAT~~~~-v~~~~~ 229 (245)
T 3dkp_A 209 HKVRRAMFSATFAYD-VEQWCK 229 (245)
T ss_dssp TTCEEEEEESSCCHH-HHHHHH
T ss_pred CCcEEEEEeccCCHH-HHHHHH
Confidence 578999999999643 334443
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.72 E-value=1.4e-16 Score=163.65 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=108.6
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc--------------CCCcEEEecchHHHHHHHHHHHHhhc
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--------------NMEPILCTQPRRFAVVAVAKMVAKGR 92 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~--------------~~~~Iivt~Prrlaa~~~a~~va~~~ 92 (726)
.++++|.++++.+.+++++++++|||||||..+...+++. ...+++++.|++.++.++++.+....
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999997655554432 11368888888888888887766543
Q ss_pred CCccCCeeeeeeccc------cccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-
Q 004875 93 NCELGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL- 165 (726)
Q Consensus 93 ~~~lg~~Vgy~v~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~- 165 (726)
. ..+..++...+.. .....+.+|+|+||++|.+.+......+.++++||||||| +..+.++...+.+.+..
T Consensus 125 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~ 202 (253)
T 1wrb_A 125 L-NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD-RMLDMGFEPQIRKIIEES 202 (253)
T ss_dssp T-TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHSS
T ss_pred c-cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHH-HHHhCchHHHHHHHHhhc
Confidence 2 1222222222221 1224568999999999999988776667799999999999 55555554443333321
Q ss_pred -cCC--CceEEEeccCCCHH
Q 004875 166 -KKN--DLRVVLMSATADIT 182 (726)
Q Consensus 166 -~~~--~lklIlmSATl~~~ 182 (726)
... +.++++||||++.+
T Consensus 203 ~~~~~~~~q~l~~SAT~~~~ 222 (253)
T 1wrb_A 203 NMPSGINRQTLMFSATFPKE 222 (253)
T ss_dssp CCCCGGGCEEEEEESSCCHH
T ss_pred cCCCCCCcEEEEEEEeCCHH
Confidence 222 67899999999754
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.71 E-value=1e-17 Score=161.79 Aligned_cols=106 Identities=18% Similarity=0.303 Sum_probs=96.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
.+++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|+++. +|||||+++++|+|+|++++||+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--- 105 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--- 105 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE---
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE---
Confidence 369999999999999999999854 578999999999999999999999988 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
||++.+ ..+|.||+|||||. ++|.|+.+++..
T Consensus 106 -----~d~p~~----------~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 106 -----YDMPED----------SDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp -----SSCCSS----------HHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred -----ECCCCC----------HHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 998874 45559999999999 689999999864
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=163.59 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=84.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
++++||||+++..++.+++.|... ++.+..+||+++..+|..+++.|+++. +|||||+++++|+|+|++++||+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--- 120 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--- 120 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE---
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE---
Confidence 478999999999999999999854 588999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhH
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~ 403 (726)
||++.+. .++.||+||+||. ++|.|+.++++.+.
T Consensus 121 -----~d~p~s~----------~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 121 -----FDLPSDI----------EEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp -----SSCCSSH----------HHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred -----eCCCCCH----------HHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 9988744 5559999999999 68999999997654
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.71 E-value=2.4e-17 Score=191.73 Aligned_cols=110 Identities=24% Similarity=0.299 Sum_probs=96.2
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCc
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~ 355 (726)
+++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|+.|+ +|+|||+++++|+|+|+|++||+
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~---- 519 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI---- 519 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----
T ss_pred CeEEEEECCHHHHHHHHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE----
Confidence 69999999999999999999854 478889999999999999999999888 99999999999999999999999
Q ss_pred eeeeecCCCCccccceEeecHHhHHHHcCCCCCCCCceEEEeechh
Q 004875 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (726)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~ 401 (726)
||.+..- .|.|..+|.||+|||||..+|.|+.++++.
T Consensus 520 ----~d~d~~G-----~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 520 ----LDADKEG-----FLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp ----TTTTCCT-----TTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred ----eCccccc-----CCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 6652210 133667779999999999999999999864
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=163.09 Aligned_cols=105 Identities=21% Similarity=0.363 Sum_probs=94.3
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCCc
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~~ 355 (726)
+++||||+++..++.+++.|... ++.+..+||++++++|..+++.|+++. +|||||+++++|+|+|++++||+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~---- 128 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN---- 128 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----
T ss_pred CCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----
Confidence 58999999999999999999854 578999999999999999999999888 99999999999999999999999
Q ss_pred eeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechh
Q 004875 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (726)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~ 401 (726)
||++.+. .+|.||+||+||. .+|.|+.++++.
T Consensus 129 ----~d~p~~~----------~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 129 ----YDMPEEI----------ENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp ----SSCCSSH----------HHHHHHHTTSCC---CCEEEEEECTT
T ss_pred ----eCCCCCH----------HHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9988754 4559999999999 689999999864
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=158.13 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=100.3
Q ss_pred CCCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc--------CCCcEEEecchHHHHHH-HHHHHHhhcC
Q 004875 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--------NMEPILCTQPRRFAVVA-VAKMVAKGRN 93 (726)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~--------~~~~Iivt~Prrlaa~~-~a~~va~~~~ 93 (726)
...++++++|.++++.+.+++++++.+|||+|||+.+..++++. ...+++++.|++.++.+ +.+.+.....
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999997776665532 13467777777777666 5555544332
Q ss_pred CccCCeeeeeecccc------ccCCCCeEEEEChHHHHHHHHhcC------CCCCceeEEEEcccccccccccHHHHHHH
Q 004875 94 CELGGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRG------LNALKYKVIILDEVHERSVESDLVLVCVK 161 (726)
Q Consensus 94 ~~lg~~Vgy~v~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~------l~l~~~~~VIIDEaHeR~~~~d~ll~~lk 161 (726)
. +..++...+... ......+|+|+||+.|.+.+.... ..+.++++||||||| +....++...+++
T Consensus 109 ~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah-~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 109 K--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH-HTNKEAVYNNIMR 185 (216)
T ss_dssp T--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHH
T ss_pred c--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECch-hhccCCcHHHHHH
Confidence 2 222222211111 111247899999999999887642 345689999999999 4545445555554
Q ss_pred HHHhcC--------------CCceEEEeccC
Q 004875 162 QLLLKK--------------NDLRVVLMSAT 178 (726)
Q Consensus 162 ~l~~~~--------------~~lklIlmSAT 178 (726)
.++..+ ++.++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 443332 67899999998
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.49 E-value=4.3e-18 Score=164.09 Aligned_cols=110 Identities=23% Similarity=0.271 Sum_probs=98.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcccccccccCCCeeEEEeCCC
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae~GIdip~v~~VId~G~ 354 (726)
++++||||+++.+++.+++.|... ++.+..+||++++.+|..+++.|+++. +|||||+++++|+|+|++++||+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--- 104 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN--- 104 (170)
Confidence 368999999999999999999854 588999999999999999999999988 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceEeecHHhHHHHcCCCCCC-CCceEEEeechhhHhh
Q 004875 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (726)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~-~~G~~~~L~s~~~~~~ 405 (726)
||++.+...| .||+||+||. ++|.|+.+++..+...
T Consensus 105 -----~~~p~~~~~~----------~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 105 -----FDMPRSGDTY----------LHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 8888755555 9999999999 6899999998765443
No 88
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.58 E-value=7.7e-14 Score=160.46 Aligned_cols=119 Identities=19% Similarity=0.143 Sum_probs=78.9
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH--Hh-cCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LA-ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l--le-~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
+-.+++|...+..+.+|+ |..+.||+|||..+...+ .. .+.+..++| |.+.+|.+.+..+.... ..+|-.||.
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvT-PTreLA~Qdae~m~~l~-~~lGLsv~~ 153 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVT-VNDYLARRDAEWMGPVY-RGLGLSVGV 153 (997)
T ss_dssp CCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEE-SSHHHHHHHHHHHHHHH-HTTTCCEEE
T ss_pred CCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEe-CCHHHHHHHHHHHHHHH-HhcCCeEEE
Confidence 345899999999999998 999999999995544443 22 233445555 55555666665544332 234445554
Q ss_pred eeccc----cccCCCCeEEEEChHHH-HHHHHhc------CCCCC---ceeEEEEccccc
Q 004875 103 HIGHS----KHLSERSKIVFKTAGVL-LDEMRDR------GLNAL---KYKVIILDEVHE 148 (726)
Q Consensus 103 ~v~~~----~~~~~~~~Iiv~T~g~L-l~~l~~~------~l~l~---~~~~VIIDEaHe 148 (726)
.++.. ....-.++|+|+||+.| ++.+..+ .+.+. ++.++||||||.
T Consensus 154 i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 154 IQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp CCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred EeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 44322 12223579999999999 7777654 23455 789999999994
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.58 E-value=4.6e-15 Score=168.99 Aligned_cols=126 Identities=19% Similarity=0.175 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEE--Eccccc
Q 004875 261 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVIL--ATNIAE 338 (726)
Q Consensus 261 i~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlv--aTniae 338 (726)
+.+.+..+.... +|.+|||+|++...+.+++.+.. ..+ ..++.. .++..+++.|+.+..|++ +|+.+.
T Consensus 372 ~~~~l~~~~~~~---~g~~lvff~S~~~~~~v~~~l~~----~~~-~~q~~~--~~~~~~l~~f~~~~~il~~V~~~~~~ 441 (540)
T 2vl7_A 372 YSILLKRIYENS---SKSVLVFFPSYEMLESVRIHLSG----IPV-IEENKK--TRHEEVLELMKTGKYLVMLVMRAKES 441 (540)
T ss_dssp HHHHHHHHHHTC---SSEEEEEESCHHHHHHHHTTCTT----SCE-EESTTT--CCHHHHHHHHHTSCCEEEEEC-----
T ss_pred HHHHHHHHHHhC---CCCEEEEeCCHHHHHHHHHHhcc----Cce-EecCCC--CcHHHHHHHHhcCCeEEEEEecCcee
Confidence 334444444432 37899999999999999988863 223 345543 346677888877667777 889999
Q ss_pred ccccCCC----eeEEEeCCCceeeeecCC-------------CCccccceEeecHHhHHHHcCCCCCC--CCceEEEe
Q 004875 339 SSVTIPK----VAYVIDSCRSLQVFWDVN-------------RKIDSAELVWVSQSQAEQRRGRTGRT--CDGQVYRL 397 (726)
Q Consensus 339 ~GIdip~----v~~VId~G~~k~~~yd~~-------------~~~~~l~~~~iS~a~~~QR~GRaGR~--~~G~~~~L 397 (726)
+|||+|+ +++||..|++-...-|+. .+...+. .+..-....|-+||+-|. ..|..+.+
T Consensus 442 EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 442 EGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp ----------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred cceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 9999998 899999887632211110 0000010 011135568999999998 45765544
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.54 E-value=2e-14 Score=150.00 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=105.0
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH---hcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeee
Q 004875 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (726)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll---e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy 102 (726)
+.++++|.++++.+.++++.++++|||+|||.++...+. ..+..+++++.|++.++.+..+.+..... ..+..++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~-~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRL-FSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTS-CCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcc-cccceEEE
Confidence 578999999999988888889999999999976655444 33445788888988888888888876432 22222332
Q ss_pred eeccccc---cCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhc-CCCceEEEeccC
Q 004875 103 HIGHSKH---LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSAT 178 (726)
Q Consensus 103 ~v~~~~~---~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~-~~~lklIlmSAT 178 (726)
..+.... .....+|+|+|++.+.+... ..+.++++||||||| +.... .++.++.. .+..++++||||
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~---~~~~~~~~vIiDEaH-~~~~~-----~~~~il~~~~~~~~~l~lSAT 261 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECH-LATGK-----SISSIISGLNNCMFKFGLSGS 261 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGG-GCCHH-----HHHHHTTTCTTCCEEEEECSS
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhHH---HHHhhCCEEEEECCc-cCCcc-----cHHHHHHHhhcCCeEEEEeCC
Confidence 2222222 12568999999998865422 124589999999999 44432 23333333 357899999999
Q ss_pred CC--HHHHHHHHhh
Q 004875 179 AD--ITKYRDYFRD 190 (726)
Q Consensus 179 l~--~~~~~~~f~~ 190 (726)
+. .+.+..+|+.
T Consensus 262 p~~~~~~~~~l~~l 275 (282)
T 1rif_A 262 LRDGKANIMQYVGM 275 (282)
T ss_dssp CCTTSTTHHHHHHH
T ss_pred CCCcchHHHHHHHh
Confidence 83 2344555544
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.49 E-value=1.7e-13 Score=139.16 Aligned_cols=141 Identities=19% Similarity=0.160 Sum_probs=100.5
Q ss_pred CCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeee
Q 004875 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~ 103 (726)
....++++|.++++.+.++++++++||||+|||.++..++...+ .+++++.|++.++.+..+.+.. ++.. .++..
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~-~~~liv~P~~~L~~q~~~~~~~-~~~~---~v~~~ 164 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS-TPTLIVVPTLALAEQWKERLGI-FGEE---YVGEF 164 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSC-SCEEEEESSHHHHHHHHHHHGG-GCGG---GEEEE
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh-CCCC---eEEEE
Confidence 34678999999999999999999999999999988877777664 4566666777777777777665 4332 03332
Q ss_pred eccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCH
Q 004875 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (726)
Q Consensus 104 v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~ 181 (726)
.+.. ....+|+++|++.+.+....- ..++++|||||+| +..+..+ +.+....+..++++||||+..
T Consensus 165 ~g~~---~~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH-~l~~~~~-----~~i~~~~~~~~~l~LSATp~r 230 (237)
T 2fz4_A 165 SGRI---KELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVH-HLPAESY-----VQIAQMSIAPFRLGLTATFER 230 (237)
T ss_dssp SSSC---BCCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSS-CCCTTTH-----HHHHHTCCCSEEEEEEESCC-
T ss_pred eCCC---CCcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCc-cCCChHH-----HHHHHhccCCEEEEEecCCCC
Confidence 2221 246789999999988765431 1368999999999 4443322 234444457789999999853
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.41 E-value=3.9e-11 Score=136.96 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhcc-CCCcEEEEEc--
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILAT-- 334 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f-~~~rkVlvaT-- 334 (726)
.+.+.+.+..+.... +|.+|||+|+....+.+++.+ +..+..=..+++.++. ++.| +++.-|+++|
T Consensus 378 ~~~l~~~i~~l~~~~---~g~~lvlF~Sy~~l~~v~~~~-----~~~v~~q~~~~~~~~~---~~~~~~~~~~vl~~v~g 446 (551)
T 3crv_A 378 WKRYADYLLKIYFQA---KANVLVVFPSYEIMDRVMSRI-----SLPKYVESEDSSVEDL---YSAISANNKVLIGSVGK 446 (551)
T ss_dssp HHHHHHHHHHHHHHC---SSEEEEEESCHHHHHHHHTTC-----CSSEEECCSSCCHHHH---HHHTTSSSSCEEEEESS
T ss_pred HHHHHHHHHHHHHhC---CCCEEEEecCHHHHHHHHHhc-----CCcEEEcCCCCCHHHH---HHHHHhcCCeEEEEEec
Confidence 344445555555443 369999999999999988732 2334433334565554 4445 3444899998
Q ss_pred ccccccccCC-----CeeEEEeCCCceeeeecCCC-----------Ccccc---ceEeecHHhHHHHcCCCCCCC--Cce
Q 004875 335 NIAESSVTIP-----KVAYVIDSCRSLQVFWDVNR-----------KIDSA---ELVWVSQSQAEQRRGRTGRTC--DGQ 393 (726)
Q Consensus 335 niae~GIdip-----~v~~VId~G~~k~~~yd~~~-----------~~~~l---~~~~iS~a~~~QR~GRaGR~~--~G~ 393 (726)
....+|||+| ..+.||-.|++-... |+.. +...+ -..| ---...|-+||+=|.. .|.
T Consensus 447 g~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~ 524 (551)
T 3crv_A 447 GKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCN 524 (551)
T ss_dssp CCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEE
T ss_pred ceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEE
Confidence 6999999999 378888878764332 3211 11011 1112 3445679999999984 355
Q ss_pred EEEe
Q 004875 394 VYRL 397 (726)
Q Consensus 394 ~~~L 397 (726)
.+.+
T Consensus 525 v~ll 528 (551)
T 3crv_A 525 VWLL 528 (551)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5444
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.27 E-value=6.5e-12 Score=129.87 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=83.6
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCC-c-E-EEEEcccccccccCCCeeEEEeCC
Q 004875 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH-R-K-VILATNIAESSVTIPKVAYVIDSC 353 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~-r-k-VlvaTniae~GIdip~v~~VId~G 353 (726)
.++|||+.....++.+...|... .++.+..+||+++.++|..+++.|+++ . + +|+||+++++|+|++++++||+
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~-- 189 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEKE-LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH-- 189 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHH-HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE--
T ss_pred CeEEEEeccHHHHHHHHHHHHHh-cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE--
Confidence 69999999999999999998742 146788899999999999999999876 4 5 7999999999999999999999
Q ss_pred CceeeeecCCCCccccceEeecHHhHHHHcCCCCCC---CCceEEEeechhh
Q 004875 354 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSF 402 (726)
Q Consensus 354 ~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaGR~---~~G~~~~L~s~~~ 402 (726)
||++.+...+ .||.||++|. ++-.+|+++++..
T Consensus 190 ------~d~~wnp~~~----------~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 190 ------FDRWWNPAVE----------DQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp ------CSCCSCTTTC------------------------CCEEEEEEETTS
T ss_pred ------ECCCCChhHH----------HHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999988888 9999999998 3456789988653
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.99 E-value=1.5e-08 Score=116.73 Aligned_cols=125 Identities=16% Similarity=0.215 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc--cc
Q 004875 261 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN--IA 337 (726)
Q Consensus 261 i~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn--ia 337 (726)
+.+.+..+.... +|.+|||+|++...+.+++.++. .+.. ...+++..++..+++.|+ ++ -|+++|. .+
T Consensus 436 ~~~~i~~l~~~~---~g~~lvlF~Sy~~l~~v~~~l~~--~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf 506 (620)
T 4a15_A 436 MATVIEDIILKV---KKNTIVYFPSYSLMDRVENRVSF--EHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRL 506 (620)
T ss_dssp HHHHHHHHHHHH---CSCEEEEESCHHHHHHHTSSCCS--CCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC
T ss_pred HHHHHHHHHHhC---CCCEEEEeCCHHHHHHHHHHHHh--cchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCce
Confidence 344444444433 36899999999999999988872 1222 455566667888889998 55 9999974 99
Q ss_pred cccccCCC--eeEEEeCCCceeeeecCC-------------CCcc-ccceEeecHHhHHHHcCCCCCC--CCceEEEe
Q 004875 338 ESSVTIPK--VAYVIDSCRSLQVFWDVN-------------RKID-SAELVWVSQSQAEQRRGRTGRT--CDGQVYRL 397 (726)
Q Consensus 338 e~GIdip~--v~~VId~G~~k~~~yd~~-------------~~~~-~l~~~~iS~a~~~QR~GRaGR~--~~G~~~~L 397 (726)
.+|||+|+ .+.||-.|++-... |+. .+.. .| ..| .--...|-+||+=|. ..|..+.+
T Consensus 507 ~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y-~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 507 SEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSV-VYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp --------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHT-HHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred eccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHh-HHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 99999994 66788778763221 110 0000 01 011 223458999999998 44655544
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.13 E-value=5.5e-06 Score=92.05 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHHc-----CCcEEEEcCCCChHhHHHHHH---HHhcCCCcEEEecchHHHHHHHHHHH
Q 004875 27 PVMSLREKIVEKVLE-----NRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMV 88 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~-----~~~vii~a~TGSGKTt~ip~~---lle~~~~~Iivt~Prrlaa~~~a~~v 88 (726)
.+.+-|.+++..+.. ...++|.|+.|||||+.+... +...+...|+++.|...+|..+.+++
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 468899999997653 249999999999999765444 34455456777778777777666654
No 96
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.09 E-value=8.7e-06 Score=93.57 Aligned_cols=140 Identities=19% Similarity=0.294 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH--Hh----cCCCcEEEecchHHHHHHHHHHHHhhcCCccCC--ee
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LA----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG--EV 100 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l--le----~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~--~V 100 (726)
.+.|.+++..+..+++++|.|++||||||.+...+ +. ....+|+++.|+..+|..+.+.+..... .++. ..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~-~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR-QLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHH-HSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHh-cCCCCHHH
Confidence 56799999999999999999999999997654432 22 2223787878877777777665433110 1110 00
Q ss_pred eeeeccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 101 gy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
...+..... .-.+++-.+++.. .+........++++||||||+ +++.+.+..+++. .++..|+|++.=.
T Consensus 230 ~~~~~~~~~--Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAs--ml~~~~~~~Ll~~---l~~~~~liLvGD~ 298 (608)
T 1w36_D 230 KKRIPEDAS--TLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEAS--MIDLPMMSRLIDA---LPDHARVIFLGDR 298 (608)
T ss_dssp CCSCSCCCB--TTTSCC-------------CTTSCCSCSEEEECSGG--GCBHHHHHHHHHT---CCTTCEEEEEECT
T ss_pred Hhccchhhh--hhHhhhccCCCch--HHHhccCCCCCCCEEEEechh--hCCHHHHHHHHHh---CCCCCEEEEEcch
Confidence 000000000 0011222223221 011111122388999999999 5665544444432 3456788886544
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.77 E-value=3.7e-05 Score=87.48 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=47.3
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH--hcCCCcEEEecchHHHHHHHHHH
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKM 87 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll--e~~~~~Iivt~Prrlaa~~~a~~ 87 (726)
...+.+.|.+++..+..++.++|.|+.|+||||.+-.++. .....+|+++.|..-++..+.+.
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhh
Confidence 4567899999999999999999999999999977655432 23334677777776666655543
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.75 E-value=5.1e-05 Score=88.01 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHHcC-CcEEEEcCCCChHhHHHHHHHHh--cCCCcEEEecchHHHHHHHHHHHHh
Q 004875 27 PVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAK 90 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~-~~vii~a~TGSGKTt~ip~~lle--~~~~~Iivt~Prrlaa~~~a~~va~ 90 (726)
.+.+.|.+++..++.. ...+|.||+|||||+.+...+.. ....+|+++.|.-.|+..+.+++..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 4789999999987754 57899999999999766555433 2235788888888899999988865
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.36 E-value=0.0011 Score=65.79 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=62.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
.+..++++|++|+||||.+.+.+... ...++++.+|..- .+ .. ..+....|.. ...+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d------~r-~~---~~i~srlG~~---------~~~~~~ 71 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID------TR-SI---RNIQSRTGTS---------LPSVEV 71 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------GG-GC---SSCCCCCCCS---------SCCEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC------ch-HH---HHHHHhcCCC---------cccccc
Confidence 56788999999999999988887653 2335666666211 00 00 0111111110 112234
Q ss_pred EChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
.+..-++..+... ....++++|||||++- +..+ ....++.+... +..+|+..-
T Consensus 72 ~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 72 ESAPEILNYIMSN-SFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp SSTHHHHHHHHST-TSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred CCHHHHHHHHHHH-hhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 5556666666542 1223689999999993 4444 33444554443 567776554
No 100
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0035 Score=65.54 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=32.2
Q ss_pred ceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCCH
Q 004875 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (726)
Q Consensus 137 ~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~~ 181 (726)
...+|++||+| +....+++..+++........+-+|+.++|++.
T Consensus 132 ~~~ii~lDE~d-~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 132 RKTLILIQNPE-NLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp CEEEEEEECCS-SSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred CceEEEEecHH-HhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 67899999999 455778887777644333456778888999753
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.06 E-value=0.001 Score=63.91 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=27.0
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecch
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Pr 77 (726)
.++..+++|+.|+||||.+.+.+... ...++++.+|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 36788999999999999987776542 22456666664
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.88 E-value=0.046 Score=62.90 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHH---HHHhc-CC--CcEEEecchHHHHHHHHHHHHhhcCC
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLAE-NM--EPILCTQPRRFAVVAVAKMVAKGRNC 94 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~---~lle~-~~--~~Iivt~Prrlaa~~~a~~va~~~~~ 94 (726)
.+.+.|.+++. ..+..++|.|+.|||||+.+.. +++.. +. .+|+++.+.+-++..+.+++....+.
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 36788999987 3467899999999999976544 33443 22 46887777788888888888876553
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.82 E-value=0.0022 Score=61.00 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHH---------cCCcEEEEcCCCChHhHHHHHHH
Q 004875 29 MSLREKIVEKVL---------ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 29 ~~~Q~~il~~i~---------~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+.|.+++..+. .++.+++.||+|+||||.+-.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHH
Confidence 556777777664 46889999999999998765553
No 104
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.77 E-value=0.0029 Score=61.07 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecch
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Pr 77 (726)
.++..+++|+.||||||.+...+... ...++++.+|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 35688999999999999888876653 33467777774
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.73 E-value=0.018 Score=61.72 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=86.3
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHh----cCCCcEEEecchHHHHHHHHHHHHhhc---CCccC
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA----ENMEPILCTQPRRFAVVAVAKMVAKGR---NCELG 97 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle----~~~~~Iivt~Prrlaa~~~a~~va~~~---~~~lg 97 (726)
.+.+.++|..++..+...+.+++..+-+.|||+.+..+++. .....|+++.|.+-.|..+...+.... ...+.
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 46789999999998876788999999999999765544332 233478888888877766655554332 11111
Q ss_pred CeeeeeeccccccCCCCeEEEEC--hHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCce-EEE
Q 004875 98 GEVGYHIGHSKHLSERSKIVFKT--AGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR-VVL 174 (726)
Q Consensus 98 ~~Vgy~v~~~~~~~~~~~Iiv~T--~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lk-lIl 174 (726)
..+.......-....+..|.+.+ ++.+ . + .+++++|+||+|.-.-..+++. .++..+..+++.+ +++
T Consensus 241 ~~~~~~~~~~I~f~nGs~i~~lsa~~~sl----r--G---~~~~~viiDE~a~~~~~~el~~-al~~~ls~~~~~kiiii 310 (385)
T 2o0j_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAV----R--G---NSFAMIYIEDCAFIPNFHDSWL-AIQPVISSGRRSKIIIT 310 (385)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECSHHHH----H--T---SCCSEEEEESGGGSTTHHHHHH-HHHHHHHSTTCCEEEEE
T ss_pred hhhccCCccEEEeCCCCEEEEEECCCCCc----c--C---CCCCEEEechhhhcCCCHHHHH-HHHHHhhcCCCCcEEEE
Confidence 11100000111112345555544 2222 1 1 2678999999995321123333 3444444434444 444
Q ss_pred eccCCCHHHHHHHHhh
Q 004875 175 MSATADITKYRDYFRD 190 (726)
Q Consensus 175 mSATl~~~~~~~~f~~ 190 (726)
.|++.. ..+.+.+..
T Consensus 311 STP~g~-n~fy~l~~~ 325 (385)
T 2o0j_A 311 TTPNGL-NHFYDIWTA 325 (385)
T ss_dssp ECCCSS-SHHHHHHHH
T ss_pred eCCCCc-hhHHHHHHH
Confidence 555544 455555543
No 106
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.54 E-value=0.0083 Score=54.92 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCChHhHHHH
Q 004875 31 LREKIVEKVLENRVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 31 ~Q~~il~~i~~~~~vii~a~TGSGKTt~ip 60 (726)
....+-.....+..+++.||+|+|||+.+-
T Consensus 13 ~~~~~~~~a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 13 YRRRLQQLSETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp HHHHHHHHTTCCSCEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCHHHHHH
Confidence 333333344567899999999999997553
No 107
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.54 E-value=0.0069 Score=69.13 Aligned_cols=113 Identities=17% Similarity=0.297 Sum_probs=78.5
Q ss_pred CcHHHHHHHHHHHHc--CCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeee
Q 004875 27 PVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~--~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v 104 (726)
-.+.-|.++++.+.+ ....+|+|+-|.|||+.+-..+.... ..++||.|...++..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-~~~~vtAP~~~a~~~l~~~~~~-------------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-GRAIVTAPAKASTDVLAQFAGE-------------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-SCEEEECSSCCSCHHHHHHHGG--------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-hCcEEECCCHHHHHHHHHHhhC--------------
Confidence 457789999999876 45789999999999988877776554 4578889987777666554321
Q ss_pred ccccccCCCCeEEEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCC
Q 004875 105 GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (726)
Q Consensus 105 ~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~ 180 (726)
.|-|..|.-++. ...+.+++|||||= ++.. .+++.++.. ...++||.|++
T Consensus 240 ----------~i~~~~Pd~~~~-------~~~~~dlliVDEAA--aIp~----pll~~ll~~---~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ----------KFRFIAPDALLA-------SDEQADWLVVDEAA--AIPA----PLLHQLVSR---FPRTLLTTTVQ 289 (671)
T ss_dssp ----------GCCBCCHHHHHH-------SCCCCSEEEEETGG--GSCH----HHHHHHHTT---SSEEEEEEEBS
T ss_pred ----------CeEEeCchhhhh-------CcccCCEEEEEchh--cCCH----HHHHHHHhh---CCeEEEEecCC
Confidence 144556765432 12368999999997 4554 444555543 34688888864
No 108
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.53 E-value=0.0058 Score=59.16 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+++.||+|+|||+.+-.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 789999999999998765543
No 109
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.52 E-value=0.0025 Score=63.11 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.++.++|.||+|+|||+.+-.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3678999999999999866444
No 110
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.0076 Score=64.35 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccc
Q 004875 445 LDPPYPEVVGDALDLLDHKRALQK 468 (726)
Q Consensus 445 l~pP~~~~i~~al~~L~~lgal~~ 468 (726)
.+|.....+..+++.|...|.+..
T Consensus 327 ~~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 327 LEHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEE
Confidence 356677888899999999999875
No 111
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.46 E-value=0.015 Score=57.18 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCC---cEEEEcCCCChHhHHHHHHHH
Q 004875 31 LREKIVEKVLENR---VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 31 ~Q~~il~~i~~~~---~vii~a~TGSGKTt~ip~~ll 64 (726)
....+...+..++ .++|.||+|+|||+.+-.+..
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3345555566555 789999999999987755543
No 112
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.0087 Score=58.08 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHH
Q 004875 30 SLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 30 ~~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~ 62 (726)
....++...+..+ ..+++.||+|+|||+.+-.+
T Consensus 24 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHH
Confidence 3344455555544 35999999999999865443
No 113
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.41 E-value=0.0073 Score=64.65 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccc
Q 004875 445 LDPPYPEVVGDALDLLDHKRALQK 468 (726)
Q Consensus 445 l~pP~~~~i~~al~~L~~lgal~~ 468 (726)
+.|.+...+.+.++.|...|.|..
T Consensus 327 ~~~~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 327 ERPRVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEE
Confidence 355677889999999999999976
No 114
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.36 E-value=0.0067 Score=55.45 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCChHhHHH
Q 004875 30 SLREKIVEKVLENRVTLIVGETGCGKSSQV 59 (726)
Q Consensus 30 ~~Q~~il~~i~~~~~vii~a~TGSGKTt~i 59 (726)
..++.+-.....+..+++.||+|+|||+.+
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHHHH
Confidence 344444444556789999999999999754
No 115
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.21 E-value=0.062 Score=61.23 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=84.5
Q ss_pred CCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH----hcCCCcEEEecchHHHHHHHHHHHHhhcCCc---cC
Q 004875 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNCE---LG 97 (726)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll----e~~~~~Iivt~Prrlaa~~~a~~va~~~~~~---lg 97 (726)
.+.+.++|..++..+..++.+++.++-|+|||+.+..+++ ......++++.+.+-.|..+...+....... +.
T Consensus 161 ~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~ 240 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (592)
T ss_dssp BCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred cCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhc
Confidence 4678999999999886678899999999999976554432 2233478888888877777766665443221 11
Q ss_pred CeeeeeeccccccCCCCeEEEEC--hHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEE-
Q 004875 98 GEVGYHIGHSKHLSERSKIVFKT--AGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL- 174 (726)
Q Consensus 98 ~~Vgy~v~~~~~~~~~~~Iiv~T--~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIl- 174 (726)
..........-....+..|.+.+ ++.+ .. .+.+++|+||+|+-.-..++.. .+...+..+++.++++
T Consensus 241 ~~~~~~~~~~i~~~nGs~i~~~s~~~~~l----rG-----~~~~~~iiDE~~~~~~~~~l~~-~~~~~l~~~~~~~ii~i 310 (592)
T 3cpe_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAV----RG-----NSFAMIYIEDCAFIPNFHDSWL-AIQPVISSGRRSKIIIT 310 (592)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECCHHHH----HH-----SCCSEEEEETGGGCTTHHHHHH-HHHHHHSSSSCCEEEEE
T ss_pred cccccCCccEEEecCCCEEEEEeCCCCCc----cC-----CCcceEEEehhccCCchhHHHH-HHHHHhccCCCceEEEE
Confidence 11110001111112345555543 2222 11 1578999999995322123333 3333333333444444
Q ss_pred eccCCCHHHHHHHHh
Q 004875 175 MSATADITKYRDYFR 189 (726)
Q Consensus 175 mSATl~~~~~~~~f~ 189 (726)
.|++.. ..+.+.+.
T Consensus 311 sTP~~~-~~~y~~~~ 324 (592)
T 3cpe_A 311 TTPNGL-NHFYDIWT 324 (592)
T ss_dssp ECCCTT-SHHHHHHH
T ss_pred eCCCCc-hhHHHHHH
Confidence 344333 34444443
No 116
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.20 E-value=0.014 Score=62.23 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll 64 (726)
++.++|.||+|+|||+.+-.+.-
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999988766543
No 117
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.19 E-value=0.0079 Score=65.37 Aligned_cols=108 Identities=20% Similarity=0.169 Sum_probs=63.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEEChH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAG 122 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~T~g 122 (726)
+..+|.|+.|||||+.+...+.. ..++++.|++.++..+.+++... |. ...+...+.|-+
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~---~~~lVlTpT~~aa~~l~~kl~~~-----~~------------~~~~~~~V~T~d 221 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF---EEDLILVPGRQAAEMIRRRANAS-----GI------------IVATKDNVRTVD 221 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT---TTCEEEESCHHHHHHHHHHHTTT-----SC------------CCCCTTTEEEHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc---CCeEEEeCCHHHHHHHHHHhhhc-----Cc------------cccccceEEEeH
Confidence 47799999999999988776532 34455556666666666655321 11 011223467776
Q ss_pred HHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 123 VLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 123 ~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
.++- .........+++|||||+- +++...+..++..+ +..++|+..-.
T Consensus 222 sfL~--~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~~----~~~~vilvGD~ 269 (446)
T 3vkw_A 222 SFLM--NYGKGARCQFKRLFIDEGL--MLHTGCVNFLVEMS----LCDIAYVYGDT 269 (446)
T ss_dssp HHHH--TTTSSCCCCCSEEEEETGG--GSCHHHHHHHHHHT----TCSEEEEEECT
T ss_pred Hhhc--CCCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHhC----CCCEEEEecCc
Confidence 6542 1222122358999999997 55555555444332 22566665544
No 118
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.12 E-value=0.021 Score=65.54 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH---hcCCCcEEEecchHHHHHHHHHHHHh
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAK 90 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll---e~~~~~Iivt~Prrlaa~~~a~~va~ 90 (726)
.+.+.|.+++..+..+..++|.||+|+|||+.+...+. .....+|+++.|...|+..+.+++..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 46899999999988888999999999999977655543 22446888888888999999888764
No 119
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.10 E-value=0.099 Score=54.61 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 32 REKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 32 Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
-+++.+.+..++.++|.|+.|+|||+.+-.+..+.
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 34455556567899999999999999988877654
No 120
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.03 E-value=0.0094 Score=62.15 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHhHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ 62 (726)
++.+++.||||+|||+.+-.+
T Consensus 152 ~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 589999999999999765443
No 121
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.89 E-value=0.025 Score=55.86 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=28.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecch
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Pr 77 (726)
.++..+++|+-||||||.+.+.+... ...++++.+|.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 46788999999999999888876543 23467777773
No 122
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.86 E-value=0.041 Score=59.88 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=72.4
Q ss_pred CcEEEEcCCCChHhHHHHHHH---HhcCCCc-EEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQFL---LAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l---le~~~~~-Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
.+++++|++|+||||.+..+. ...+.+. ++.+.+.|.++......++...+..+ +.. . ..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-----~~~-~-----~~----- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-----YGE-P-----NN----- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-----ECC-T-----TC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce-----eec-c-----cc-----
Confidence 478999999999998765543 3444433 44456777777666666665444321 110 0 00
Q ss_pred EChHHHHH-HHHhcCCCCCceeEEEEccccccc---ccccHHHHHHHHHHhcCCCceEEEeccCC--CHHHHHHHHh
Q 004875 119 KTAGVLLD-EMRDRGLNALKYKVIILDEVHERS---VESDLVLVCVKQLLLKKNDLRVVLMSATA--DITKYRDYFR 189 (726)
Q Consensus 119 ~T~g~Ll~-~l~~~~l~l~~~~~VIIDEaHeR~---~~~d~ll~~lk~l~~~~~~lklIlmSATl--~~~~~~~~f~ 189 (726)
..|..+.. .+..- ...++++||||++- |. .+..+...+.+......++.-+++++|+. +.....+.|.
T Consensus 162 ~dp~~i~~~al~~a--~~~~~DvvIIDTaG-r~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 162 QNPIEIAKKGVDIF--VKNKMDIIIVDTAG-RHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp SCHHHHHHHHHHHT--TTTTCSEEEEEECC-CSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HhcCCCEEEEECCC-CccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 01333332 22221 12489999999998 43 34444444433333346777888899985 4444555565
No 123
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.85 E-value=0.046 Score=56.45 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=25.3
Q ss_pred eeEEEEcccccc-------cccccHHHHHHHHHHhcCCCceEEEeccC
Q 004875 138 YKVIILDEVHER-------SVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (726)
Q Consensus 138 ~~~VIIDEaHeR-------~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (726)
.++|+|||+|.- ....+.+..+++.+-..+.++.+|+.+.+
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 469999999932 12344455555555555556777766554
No 124
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.85 E-value=0.0086 Score=58.55 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecch
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Pr 77 (726)
.++..+++|+-||||||.+.+.+... ...++++.+|.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 35677899999999999888886543 23467777774
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.83 E-value=0.11 Score=48.64 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcC--CcEEEEcCCCChHhHHHHHHH
Q 004875 31 LREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 31 ~Q~~il~~i~~~--~~vii~a~TGSGKTt~ip~~l 63 (726)
...++...+..+ +.++++||+|+|||+.+-.+.
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHH
Confidence 344555555433 679999999999998764443
No 126
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.82 E-value=0.037 Score=58.74 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=22.6
Q ss_pred HHHHHHHHcCC---cEEEEcCCCChHhHHHHHHHH
Q 004875 33 EKIVEKVLENR---VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 33 ~~il~~i~~~~---~vii~a~TGSGKTt~ip~~ll 64 (726)
..+...+..++ .+++.||+|+|||+.+-.+..
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555554 489999999999987755543
No 127
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.71 E-value=0.055 Score=56.77 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=24.4
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEE
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLLAENMEPIL 72 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Ii 72 (726)
...+.++|.|+.|+|||+.+-.+..+.....++
T Consensus 28 l~~~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~ 60 (357)
T 2fna_A 28 LRAPITLVLGLRRTGKSSIIKIGINELNLPYIY 60 (357)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 333799999999999999888777654433333
No 128
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.61 E-value=0.0035 Score=57.94 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.++.+++.||+|+|||+.+-.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i 56 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAW 56 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 6789999999999999875443
No 129
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.57 E-value=0.047 Score=56.98 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+++.||+|+|||+.+-.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 589999999999998765554
No 130
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.50 E-value=0.046 Score=59.54 Aligned_cols=129 Identities=17% Similarity=0.262 Sum_probs=72.7
Q ss_pred CcEEEEcCCCChHhHHHHHH---HHhcCCCc-EEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQF---LLAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~---lle~~~~~-Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
.+++++|++|+||||.+..+ +...+.+. ++.+.|.|.++....+.++...+..+ |... ..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-----~~~~------~~----- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-----FGNP------QE----- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-----ECCT------TC-----
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-----EecC------CC-----
Confidence 57899999999999876554 33444443 44556777777666666666554331 1100 00
Q ss_pred EChHHHH-HHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEeccCC--CHHHHHHHHhh
Q 004875 119 KTAGVLL-DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATA--DITKYRDYFRD 190 (726)
Q Consensus 119 ~T~g~Ll-~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~-~~~~~lklIlmSATl--~~~~~~~~f~~ 190 (726)
..|.-++ +.+..- ...++++||||.+= |....+-+..-++.+. ...++.-+++++||. +.......|..
T Consensus 165 ~dp~~i~~~al~~a--~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~ 237 (443)
T 3dm5_A 165 KDAIKLAKEGVDYF--KSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE 237 (443)
T ss_dssp CCHHHHHHHHHHHH--HHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh
Confidence 1233332 222211 01258999999997 4433333433343332 335777889999986 33344555553
No 131
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.48 E-value=0.051 Score=57.17 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=24.0
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (726)
.++.+|||||||. +..+....+++.+-.-.++..+|+.+-
T Consensus 107 ~~~kvviIdead~--l~~~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 107 GGAKVVWVTDAAL--LTDAAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp SSCEEEEESCGGG--BCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCcEEEEECchhh--cCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 4799999999993 334444555555433333455555443
No 132
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.042 Score=64.80 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=52.0
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH---HhcCCCcEEEecchHHHHHHHHHHHHh
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAK 90 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l---le~~~~~Iivt~Prrlaa~~~a~~va~ 90 (726)
.+.+.|.+++..+..+..++|.||+|||||+.+...+ ......+|+++.|...|+..+.+++..
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999999888889999999999997655543 232346788888889999999998865
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.46 E-value=0.055 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+.+++.||+|+|||+.+-.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34689999999999998664443
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.43 E-value=0.035 Score=59.24 Aligned_cols=24 Identities=17% Similarity=0.085 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccc
Q 004875 445 LDPPYPEVVGDALDLLDHKRALQK 468 (726)
Q Consensus 445 l~pP~~~~i~~al~~L~~lgal~~ 468 (726)
.+|.....+.++++.|...|.+..
T Consensus 315 ~~~~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 315 QKPLSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 356678889999999999999976
No 135
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.073 Score=55.18 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCC--cEEEEcCCCChHhHHHHHH
Q 004875 32 REKIVEKVLENR--VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 32 Q~~il~~i~~~~--~vii~a~TGSGKTt~ip~~ 62 (726)
...+...+..++ .+++.||+|+|||+.+-.+
T Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 34 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 334444555554 6999999999999865444
No 136
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.29 E-value=0.067 Score=63.04 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=52.0
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH---hcCCCcEEEecchHHHHHHHHHHHHh
Q 004875 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAK 90 (726)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll---e~~~~~Iivt~Prrlaa~~~a~~va~ 90 (726)
.+.+.|.+++..+..+..++|.||+|+|||+.+...+. .....+|+++.|...|+..+.+++..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 46899999999998888999999999999976655443 22446888888888999998888764
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.29 E-value=0.07 Score=55.93 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=22.1
Q ss_pred HHHHHHHHH-HHHHcCccccCCCCCCCCCCHhHHHH
Q 004875 450 PEVVGDALD-LLDHKRALQKISPRGRYEPTFYGRLL 484 (726)
Q Consensus 450 ~~~i~~al~-~L~~lgal~~~~~~g~~~lT~lG~~l 484 (726)
...+.+-++ .|...|.|.. .+.|+ ..|+.|..-
T Consensus 293 ~~tl~~~l~~~l~~~gli~~-~~~g~-~~t~~~~~~ 326 (338)
T 3pfi_A 293 ENTIEDVIEPYLLANGYIER-TAKGR-IASAKSYSA 326 (338)
T ss_dssp HHHHHHTTHHHHHHTTSEEE-ETTEE-EECHHHHHH
T ss_pred HHHHHHHHhHHHHHcCceec-CCCcc-cccHHHHHH
Confidence 445665666 8888898876 44565 588887644
No 138
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.29 E-value=0.084 Score=52.91 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=17.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll 64 (726)
+.+++.||+|+|||+.+-.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999986654443
No 139
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.21 E-value=0.077 Score=55.11 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
..++|.||+|+|||+.+-.+
T Consensus 39 ~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 68999999999999865444
No 140
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.21 E-value=0.059 Score=54.71 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=18.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
..+++.||+|+|||+.+-.+..+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999876554443
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.12 E-value=0.038 Score=55.85 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=19.4
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
...+..++|.||+|+|||+.+-.+.
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHH
Confidence 3456889999999999997654443
No 142
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.08 E-value=0.12 Score=53.46 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH--h--cCCCcEEE-ecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeE
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL--A--ENMEPILC-TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll--e--~~~~~Iiv-t~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~I 116 (726)
++++.++|++|+||||.+..+.. . .+.+..++ .-+.+.++......++...+..+- +.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~--------------- 167 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VC--------------- 167 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BC---------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ec---------------
Confidence 56899999999999987766532 2 34332232 334454444333334443332110 00
Q ss_pred EEEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccCCCHHHHHHHHh
Q 004875 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYFR 189 (726)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-~~~~lklIlmSATl~~~~~~~~f~ 189 (726)
..+..+...+.. +.++++||||.+- +.....-++.-+..++. ..++-.+++++||.+...+.++..
T Consensus 168 --~~~~~l~~al~~----~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~ 234 (296)
T 2px0_A 168 --YTKEEFQQAKEL----FSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVK 234 (296)
T ss_dssp --SSHHHHHHHHHH----GGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTT
T ss_pred --CCHHHHHHHHHH----hcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHH
Confidence 123333333321 2488999999776 44333333333333332 224445788888877666665544
No 143
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.93 E-value=0.1 Score=58.39 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=20.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+.++++||+|+|||+.+-.+.-+.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 6899999999999987766655544
No 144
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.80 E-value=0.097 Score=54.49 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=18.5
Q ss_pred HHHHHHHcCC---cEEEEcCCCChHhHHHHHH
Q 004875 34 KIVEKVLENR---VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 34 ~il~~i~~~~---~vii~a~TGSGKTt~ip~~ 62 (726)
.+...+..++ .+++.||+|+|||+.+-.+
T Consensus 37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 3334444443 4577788999999865443
No 145
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.75 E-value=0.086 Score=55.04 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+.+++.||+|+|||+.+-.+.-+.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999998765554443
No 146
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.71 E-value=0.036 Score=54.10 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=26.7
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHHh--cCCCcEEEecch
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPR 77 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~lle--~~~~~Iivt~Pr 77 (726)
..+...+++|+-||||||.+.+.+.. ....++++.+|.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 45678899999999999977665543 223467777773
No 147
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.70 E-value=0.035 Score=59.83 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHcCcccc
Q 004875 446 DPPYPEVVGDALDLLDHKRALQK 468 (726)
Q Consensus 446 ~pP~~~~i~~al~~L~~lgal~~ 468 (726)
++.....+..+++.|...|.|..
T Consensus 348 ~~~~~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 348 KPRGYTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEe
Confidence 34456778888999999999876
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.63 E-value=0.14 Score=53.02 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=59.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH---hcCCCcEE-EecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEE
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL---AENMEPIL-CTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll---e~~~~~Ii-vt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Ii 117 (726)
++++.++|++|+||||.+..+.. ..+.+..+ -..++|.++......+.+..+..+ . ... +.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~------~-~~~---s~----- 168 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV------I-SHS---EG----- 168 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE------E-CCS---TT-----
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE------E-ecC---Cc-----
Confidence 35788999999999987665532 33333222 234556555433333444333221 0 000 00
Q ss_pred EEChHHH-HHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHh-------cCCCceEEEeccCC
Q 004875 118 FKTAGVL-LDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATA 179 (726)
Q Consensus 118 v~T~g~L-l~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~-------~~~~lklIlmSATl 179 (726)
..|..+ .+.+... ...++++|||||+- +....+-+...++.+.. ..++--++.+.|+.
T Consensus 169 -~~~~~v~~~al~~a--~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 169 -ADPAAVAFDAVAHA--LARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp -CCHHHHHHHHHHHH--HHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred -cCHHHHHHHHHHHH--HhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 012222 1222211 11378999999997 54444444444443322 13555567778874
No 149
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.59 E-value=0.035 Score=53.31 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQP 76 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~P 76 (726)
.++-.++.|+.||||||.+.+.+... ...++++..|
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 46788999999999998887776432 2245665555
No 150
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.58 E-value=0.056 Score=56.88 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=21.6
Q ss_pred HHHHHHHcCCc--EEEEcCCCChHhHHHHHHH
Q 004875 34 KIVEKVLENRV--TLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 34 ~il~~i~~~~~--vii~a~TGSGKTt~ip~~l 63 (726)
.+-..+.+++. +++.||+|+||||.+-.+.
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 33444556655 9999999999998765443
No 151
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.54 E-value=0.053 Score=57.03 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=21.5
Q ss_pred HHHHHHHHcC--CcEEEEcCCCChHhHHHHHH
Q 004875 33 EKIVEKVLEN--RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 33 ~~il~~i~~~--~~vii~a~TGSGKTt~ip~~ 62 (726)
..+...+..+ ..+++.||+|+|||+.+-.+
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 78 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILAL 78 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHH
Confidence 3444555555 56999999999999865444
No 152
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.50 E-value=0.18 Score=55.17 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+.+++.||+|+|||+.+-.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~ai 150 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSI 150 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57999999999999876444
No 153
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.50 E-value=0.14 Score=52.48 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+.+++.||+|+|||+.+-.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 5789999999999998765443
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.28 E-value=0.16 Score=53.53 Aligned_cols=41 Identities=15% Similarity=0.400 Sum_probs=27.5
Q ss_pred ceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 137 ~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
++.++|+||+|. ++.+....+++.+....++..+|+.|-.+
T Consensus 134 ~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 134 RYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 788999999994 66666666666555544555666655443
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.18 E-value=0.13 Score=53.24 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCC--cEEEEcCCCChHhHHHHHH
Q 004875 32 REKIVEKVLENR--VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 32 Q~~il~~i~~~~--~vii~a~TGSGKTt~ip~~ 62 (726)
...+...+..++ .+++.||+|+|||+.+-.+
T Consensus 30 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 30 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 334445555543 4999999999999765444
No 156
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.10 E-value=0.17 Score=54.25 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHhHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ 62 (726)
.+.+++.||+|+|||+.+-.+
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 478999999999999866444
No 157
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.1 Score=55.90 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHhHHH
Q 004875 43 RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~i 59 (726)
+.+++.||+|||||+.+
T Consensus 183 rGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCEEEESCSSSSHHHHH
T ss_pred CceEEeCCCCCCHHHHH
Confidence 68999999999999644
No 158
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.85 E-value=0.33 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+.+++.||+|+|||+.+-.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 3578999999999998765443
No 159
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.84 E-value=0.16 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+.+++.||+|+|||+.+-.+..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999876555443
No 160
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.83 E-value=0.22 Score=58.43 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHhHHH
Q 004875 44 VTLIVGETGCGKSSQV 59 (726)
Q Consensus 44 ~vii~a~TGSGKTt~i 59 (726)
.+++.||||+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999654
No 161
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.83 E-value=0.088 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=18.8
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..++|.||||+|||+.+-.+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHH
Confidence 356789999999999997654443
No 162
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.77 E-value=0.23 Score=51.44 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=23.1
Q ss_pred CceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 004875 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (726)
Q Consensus 136 ~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (726)
.++.+|||||||. +..+....++|.+-.-.+...+|+.+
T Consensus 81 ~~~kvviIdead~--lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCER--MTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGG--BCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHH--hCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 4799999999993 33444445555443333345555543
No 163
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.76 E-value=0.25 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
++.+++.||+|+|||+.+-.+.-+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 46799999999999987665554443
No 164
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.66 E-value=0.11 Score=54.96 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+.+++.||+|+|||+.+-.+.-+.+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 5699999999999987655554443
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.65 E-value=0.074 Score=54.89 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.8
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
.+++.||+|+|||+.+-.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CEEEESSSSSSHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHH
Confidence 5999999999999765444
No 166
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.51 E-value=0.18 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=18.7
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+.+++.||+|+|||+.+-.+.-+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 679999999999998765554443
No 167
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.41 E-value=0.084 Score=57.86 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=20.4
Q ss_pred HHHHHHcCC--cEEEEcCCCChHhHHHHHH
Q 004875 35 IVEKVLENR--VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 35 il~~i~~~~--~vii~a~TGSGKTt~ip~~ 62 (726)
+...+..++ .+++.||+|+|||+.+-.+
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHH
Confidence 345556565 5999999999999865433
No 168
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=93.26 E-value=0.36 Score=50.03 Aligned_cols=120 Identities=12% Similarity=0.057 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccc
Q 004875 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (726)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTni 336 (726)
..++..++..+.. .+.+||||+...+..+-+.+.+. +.++....+.|....++++. .+.. .|.+.|..
T Consensus 111 f~~L~~LL~~l~~----~~~kVLIfsq~t~~LDilE~~l~--~~~~~y~RlDG~~~~~~~k~-----~~~~~~i~Lltsa 179 (328)
T 3hgt_A 111 FSVLRDLINLVQE----YETETAIVCRPGRTMDLLEALLL--GNKVHIKRYDGHSIKSAAAA-----NDFSCTVHLFSSE 179 (328)
T ss_dssp HHHHHHHHHHHTT----SCEEEEEEECSTHHHHHHHHHHT--TSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHHHHHHHHHHHh----CCCEEEEEECChhHHHHHHHHHh--cCCCceEeCCCCchhhhhhc-----ccCCceEEEEECC
Confidence 3445555555533 23699999999999999999998 56789999999865543221 2333 66666766
Q ss_pred cccccc-----CCCeeEEEeCCCceeeeecCCCCccccceEeecHHhHHHHcCCCC--CCCCceEEEeechhh
Q 004875 337 AESSVT-----IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG--RTCDGQVYRLVTKSF 402 (726)
Q Consensus 337 ae~GId-----ip~v~~VId~G~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRaG--R~~~G~~~~L~s~~~ 402 (726)
..-|++ .-+.+.||- ||+..+...- --++..|+-|.| +.++=.+|||.+...
T Consensus 180 g~~gin~~~~nl~~aD~VI~--------~DsdwNp~~d------~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLIC--------LDTTVDTSQK------DIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEE--------CSTTCCTTSH------HHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCCcCcccccCCCCCEEEE--------ECCCCCCCCh------HHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 666675 456777776 8887765531 013334555553 335667999998643
No 169
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.22 E-value=0.3 Score=50.17 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+.+++.||+|+|||+.+-.+..+.+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999986555444433
No 170
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.17 E-value=0.13 Score=55.94 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHhHHH
Q 004875 43 RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~i 59 (726)
+.+++.||+|+|||+.+
T Consensus 244 rGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SEEEECSCTTSSHHHHH
T ss_pred CceEeeCCCCCcHHHHH
Confidence 68999999999999654
No 171
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.05 E-value=0.18 Score=55.57 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=17.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
+.+++.||+|+|||+.+-.+.-+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999876544433
No 172
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.80 E-value=0.22 Score=51.25 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=16.5
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
..+++.||+|+|||+.+-.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 47999999999999766544
No 173
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.17 Score=54.92 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHhHHHH
Q 004875 43 RVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip 60 (726)
+.+++.||+|||||+.+-
T Consensus 216 rGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeeEEECcCCCCHHHHHH
Confidence 689999999999997543
No 174
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.58 E-value=0.093 Score=51.16 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 29 ~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+--+..+++.+..+..+.|.||.||||||.+-.+.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHh
Confidence 34567789999999999999999999998875553
No 175
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.39 E-value=0.036 Score=68.80 Aligned_cols=129 Identities=11% Similarity=0.100 Sum_probs=72.7
Q ss_pred CCCCcHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHH---HhcCC-----CcEEEecchHHHHHHHHHHHHhhcCCc
Q 004875 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL---LAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCE 95 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~l---le~~~-----~~Iivt~Prrlaa~~~a~~va~~~~~~ 95 (726)
....+++-|.+++..- +++++|.|..|||||+.+..-+ +..+. ..|+|+.+++.+|..+..|+...++..
T Consensus 7 ~~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp ---CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 3456788999998754 7899999999999997765433 22322 379999999999999998887754322
Q ss_pred cCCeeeeeeccccccCCCCeEEEEChHHHHHHHHhc-CCCCC-ceeEEEEcccccccccccH
Q 004875 96 LGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDR-GLNAL-KYKVIILDEVHERSVESDL 155 (726)
Q Consensus 96 lg~~Vgy~v~~~~~~~~~~~Iiv~T~g~Ll~~l~~~-~l~l~-~~~~VIIDEaHeR~~~~d~ 155 (726)
++..-. ..........-.++.++|-..+...+... +..+. +.+.-|+||.....+..+.
T Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~~~~l~~~~ 145 (1232)
T 3u4q_A 85 LVQRPG-SLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDEV 145 (1232)
T ss_dssp HHHSTT-CHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHHHHHHHHHH
T ss_pred hhcCcc-hHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHHHHHHHHHH
Confidence 211000 00000111111345778876655444322 11111 2222378887643333333
No 176
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.37 E-value=0.64 Score=52.93 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH
Q 004875 31 LREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 31 ~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.-..+-..+..++.+++.||+|+||||.+-.+.-
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3344555667889999999999999987755543
No 177
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.26 E-value=0.26 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+.+++.||+|+|||+.+-.+..+
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999866554333
No 178
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.26 E-value=0.66 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+.+++.||+|+|||+.+-.+.-+.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 679999999999998765555444
No 179
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.27 Score=53.41 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=15.9
Q ss_pred CcEEEEcCCCChHhHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~ 61 (726)
+-+++.||+|||||+.+-.
T Consensus 216 rGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6899999999999975433
No 180
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.91 E-value=0.37 Score=51.95 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHhHHH
Q 004875 43 RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~i 59 (726)
+-+++.||+|+|||+.+
T Consensus 217 rGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SEEEEESSTTTTHHHHH
T ss_pred CCCceECCCCchHHHHH
Confidence 67999999999999644
No 181
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.37 Score=52.26 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHhHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~ 61 (726)
+-+++.||+|||||+.+-.
T Consensus 207 rGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp CEEEEESCTTTTHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5699999999999975433
No 182
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.67 E-value=0.096 Score=49.56 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=19.7
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.++.++|+||+||||||++-.+.-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999998765543
No 183
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.54 E-value=0.68 Score=50.90 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHH--HhcCCCcEEE
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL--LAENMEPILC 73 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l--le~~~~~Iiv 73 (726)
+.++.|+|++||||||.+-.+. +....+.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 4578999999999998876653 2223345555
No 184
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.47 E-value=0.31 Score=50.95 Aligned_cols=122 Identities=18% Similarity=0.209 Sum_probs=60.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH--HhcCCCcEEE--ecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeE
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL--LAENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l--le~~~~~Iiv--t~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~I 116 (726)
.+..+.++||+||||||.+-.+. +....+.|.+ ..+.+.++......++...+.. +. ......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~------~v-~q~~~~------ 194 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK------VI-KHSYGA------ 194 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCE------EE-CCCTTC------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCce------EE-eccccC------
Confidence 35688999999999998876553 2222233333 3344444444444444443321 11 111000
Q ss_pred EEEChHH-HHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCC
Q 004875 117 VFKTAGV-LLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (726)
Q Consensus 117 iv~T~g~-Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~ 180 (726)
.|.. ..+.+.... ..+++++++|.+-...........+-+......++..++++.|+..
T Consensus 195 ---~p~~~v~e~l~~~~--~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 195 ---DPAAVAYDAIQHAK--ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp ---CHHHHHHHHHHHHH--HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred ---CHHHHHHHHHHHHH--hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 1221 111111100 1256789999987322333333333222233457778888988864
No 185
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.39 E-value=0.11 Score=55.34 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=22.8
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHHH
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+..+..++|+|||||||||.+-.++-
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 456889999999999999998877654
No 186
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.99 E-value=0.079 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.7
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..+..+.|+|||||||||.+-.++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHH
Confidence 5677899999999999998775543
No 187
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.75 E-value=0.13 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.++.++|+||+||||||.+-.++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 56889999999999999875543
No 188
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.71 E-value=0.13 Score=60.50 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=15.5
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
.+++.||||+|||+.+-.+
T Consensus 490 ~~ll~G~~GtGKT~la~~l 508 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 6999999999999765433
No 189
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.61 E-value=0.32 Score=56.99 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.8
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+++.||+|+|||+.+-...
T Consensus 239 ~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999998654433
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.52 E-value=0.19 Score=56.02 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.5
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..+.+++|+|||||||||.+-.++
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999999875543
No 191
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.46 E-value=0.19 Score=54.50 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHHHH--cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 26 LPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 26 LPi~~~Q~~il~~i~--~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
|-+..-+.+++..+. .+..++|+|||||||||.+-.++-
T Consensus 149 Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 444444555666554 356789999999999998766543
No 192
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.34 E-value=0.13 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.7
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..+.|+||+||||||++-.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~ 28 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALV 28 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHH
Confidence 367889999999999999765543
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.09 E-value=0.16 Score=49.25 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.++.++|+||+||||||++-.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHH
Confidence 57789999999999999776554
No 194
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.04 E-value=0.14 Score=53.78 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=21.5
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..+..+.|+|||||||||.+-.++
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGG
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHh
Confidence 35688999999999999999765544
No 195
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.92 E-value=0.17 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=19.9
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..++.+.|+||+||||||.+-.+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~ 44 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLL 44 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999876554
No 196
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.65 E-value=0.19 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.++.++|+||+|+||||++-.++-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 678999999999999998766543
No 197
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=89.63 E-value=0.31 Score=56.31 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHHH---HHhc-C--CCcEEEecchHHHHHHHHHHHHhhcC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAE-N--MEPILCTQPRRFAVVAVAKMVAKGRN 93 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~---lle~-~--~~~Iivt~Prrlaa~~~a~~va~~~~ 93 (726)
+++.|.+++.. .+..++|.|+.|||||+.+..- ++.. + ...|+++...+-+|..+.+|+....+
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 56789988875 3678999999999999665542 3333 3 24687777777888889999887544
No 198
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.40 E-value=0.19 Score=47.65 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
++.++|+||+||||||.+-.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999775554
No 199
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.24 E-value=0.2 Score=48.42 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.0
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..++.+.|.||+||||||.+-.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 57889999999999999999875543
No 200
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.17 E-value=0.16 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.6
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..+..++|+|+.||||||++-.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999876554
No 201
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.15 E-value=0.18 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=19.3
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+..+..++|+|++||||||++-.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 346788999999999999976554
No 202
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.07 E-value=0.15 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..+..+.++||+||||||.+-.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 35678999999999999988753
No 203
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.67 E-value=0.18 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=19.1
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..++|+|||||||||.+-.++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 355689999999999998875543
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.64 E-value=0.6 Score=55.55 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.0
Q ss_pred cEEEEcCCCChHhHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~ 61 (726)
.+++.||||+|||+.+-.
T Consensus 590 ~vLl~Gp~GtGKT~lA~~ 607 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKT 607 (854)
T ss_dssp EEEEBSCSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 789999999999975433
No 205
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=88.61 E-value=0.5 Score=55.07 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHcCCcEEEEcCCCChHhHHHHH---HHHhc-C--CCcEEEecchHHHHHHHHHHHHhhcC
Q 004875 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLAE-N--MEPILCTQPRRFAVVAVAKMVAKGRN 93 (726)
Q Consensus 28 i~~~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~---~lle~-~--~~~Iivt~Prrlaa~~~a~~va~~~~ 93 (726)
+.+.|.+++.. .+..++|.|+.|||||+.+.. +++.. + ...|+++..++-||..+.+|+....+
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 57889988875 356889999999999965543 33432 3 24688877878888888888877544
No 206
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.35 E-value=0.32 Score=46.60 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=21.2
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+..++.++|+|++||||||+.-.+.-..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34678999999999999998765543333
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.28 E-value=0.16 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.5
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..+..++|+|||||||||.+-.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3467789999999999998876554
No 208
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.22 E-value=0.31 Score=45.37 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=21.9
Q ss_pred HHHHHHHHc--CCcEEEEcCCCChHhHHHHHHH
Q 004875 33 EKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 33 ~~il~~i~~--~~~vii~a~TGSGKTt~ip~~l 63 (726)
.++++.+.. .+.++|.||+|+|||+.+-.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHH
Confidence 344444443 4689999999999998765543
No 209
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.00 E-value=1.3 Score=52.52 Aligned_cols=30 Identities=23% Similarity=0.590 Sum_probs=20.6
Q ss_pred HHHHHHHHc--CCcEEEEcCCCChHhHHHHHH
Q 004875 33 EKIVEKVLE--NRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 33 ~~il~~i~~--~~~vii~a~TGSGKTt~ip~~ 62 (726)
.++++.+.. .++++++||+|+|||+.+-.+
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~l 211 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGL 211 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHH
Confidence 344444443 357999999999999765443
No 210
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.42 E-value=2.6 Score=45.52 Aligned_cols=119 Identities=10% Similarity=0.165 Sum_probs=56.1
Q ss_pred CcEEEEcCCCChHhHHHHHHH---HhcCCC-cEEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQFL---LAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l---le~~~~-~Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
+++.++|++|+||||.+..+. ...+.. .++-.-+.+.++......++...+..+ +.. .. .
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v-----~~~-~~-----~----- 162 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV-----LEV-MD-----G----- 162 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE-----EEC-CT-----T-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE-----Eec-CC-----C-----
Confidence 468889999999997765543 223332 233344556555433233333333221 110 00 0
Q ss_pred EChHHHHH-HHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 119 KTAGVLLD-EMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 119 ~T~g~Ll~-~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
..|.-+++ .+..- ...+|++||||=+-....+......+.+......++.-++++.|+.
T Consensus 163 ~~p~~i~~~~l~~~--~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 163 ESPESIRRRVEEKA--RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp CCHHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred CCHHHHHHHHHHHH--HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 13433333 22211 0137899999977521222223322222222234665666677663
No 211
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.39 E-value=0.32 Score=47.73 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=20.3
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
+..++.++|+||.||||||.+-.++-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999998766543
No 212
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.34 E-value=0.32 Score=46.79 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=18.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..++.++++|++||||||+.-.+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHH
Confidence 45678999999999999976444
No 213
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=87.28 E-value=1.8 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+++.||+|+|||+.+-.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999998764443
No 214
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.26 E-value=2.1 Score=43.88 Aligned_cols=122 Identities=11% Similarity=0.162 Sum_probs=56.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHH--HhcCCCcEEE--ecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEE
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL--LAENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l--le~~~~~Iiv--t~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Ii 117 (726)
++.+.++|++|+||||.+..+. +....+++.+ ..+++.++......+....+..+ +. ... .
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~---~~~-----~---- 162 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE---VMD-----G---- 162 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE---CCT-----T----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE---cCC-----C----
Confidence 4578889999999997765543 2222233333 33444443322222333322211 00 000 0
Q ss_pred EEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCCC
Q 004875 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (726)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl~ 180 (726)
..|..+++...... ...+|++|||||.---..+...+..+.+......++.-++++.|+..
T Consensus 163 -~~p~~l~~~~l~~~-~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 163 -ESPESIRRRVEEKA-RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp -CCHHHHHHHHHHHH-HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred -CCHHHHHHHHHHHH-HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc
Confidence 13444433322210 01378999999995223332223333222222345555666777643
No 215
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.92 E-value=0.42 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
+-+||+||+|+||||++-..+-+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999976554433
No 216
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.88 E-value=0.27 Score=48.16 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=22.4
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.+.++++|.||+||||+||.-.+.-..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4557889999999999999877665544
No 217
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.76 E-value=0.32 Score=50.23 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHhHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~ 61 (726)
...++|+||||||||+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHH
Confidence 45789999999999986543
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.72 E-value=0.36 Score=47.73 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.0
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
-+..+..+.|.||+||||||.+-.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34578999999999999999887665
No 219
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.54 E-value=0.48 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+.++++|++||||||+.-.+.-
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999997655543
No 220
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.50 E-value=0.31 Score=50.97 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHhHHH
Q 004875 41 ENRVTLIVGETGCGKSSQV 59 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~i 59 (726)
.++.++|+||||||||++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3458999999999999754
No 221
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.46 E-value=1.2 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+.+++.||+|+||||.+-.+.-...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999987765554433
No 222
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.25 E-value=0.22 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||+||||||.+-.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 46789999999999999976544
No 223
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.01 E-value=0.37 Score=44.45 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=16.7
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
.++|+|++||||||+.-.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999987666
No 224
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.98 E-value=0.34 Score=46.60 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
++.++|+||||+|||++...+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999998765544
No 225
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=85.93 E-value=0.53 Score=52.85 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCChHhHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ 62 (726)
+..+++.||+|+||||.+-.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 568999999999999866444
No 226
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.90 E-value=0.29 Score=48.11 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=15.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..+.|+||+||||||++-.+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999998765543
No 227
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.88 E-value=0.41 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..++|+|+.||||||+.-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876554
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.69 E-value=0.55 Score=45.32 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=26.0
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEEEe
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCT 74 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt 74 (726)
+..+..++|.|++|+||||.+.+++...+.+.+++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 335689999999999999988888773333334443
No 229
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.44 E-value=0.45 Score=44.10 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..++|+|+.||||||+.-.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999765543
No 230
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.42 E-value=0.51 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.++|+|+|||||||..-.+.-.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5789999999999976555433
No 231
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=85.39 E-value=0.47 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..++|+|+.||||||++-.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999775553
No 232
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.33 E-value=0.36 Score=46.64 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCChHhHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~ 61 (726)
.+..+.|.||+||||||.+-.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~ 41 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNP 41 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356889999999999987643
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=85.23 E-value=0.72 Score=54.40 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
++.++++||+||||||.+-.+.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4679999999999998765443
No 234
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.17 E-value=0.49 Score=49.15 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=26.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcCCCcEEEecc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQP 76 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~P 76 (726)
..++|+|+.||||||.+-.++-.....++.++.|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe
Confidence 4789999999999999877665444456777766
No 235
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.03 E-value=0.27 Score=48.80 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=19.5
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|+.+.|.||+||||||.+-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999987554
No 236
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.00 E-value=0.4 Score=46.64 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.4
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
..+..+.|.||+||||||.+-.++.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998887754
No 237
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=84.89 E-value=0.78 Score=43.97 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=23.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh---cCCCcEEEec
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQ 75 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle---~~~~~Iivt~ 75 (726)
+...++|.+++|.||||...-..+. .+. +++++|
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGK-NVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 3458899999999999776555433 333 566664
No 238
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.84 E-value=0.54 Score=46.25 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=21.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
..+..++|.|++|+||||.+.+++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999987777553
No 239
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=84.82 E-value=0.65 Score=42.94 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.2
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..+..+.+.||.||||||.+-.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l 53 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46778999999999999976544
No 240
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.77 E-value=0.5 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=19.7
Q ss_pred cEEEEcCCCChHhHHHHHHHHhcC
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
++++.||+||||+||...+.-..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999877765554
No 241
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.76 E-value=0.49 Score=48.77 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHhHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~ 61 (726)
+.++|+||||||||+....
T Consensus 11 ~~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHH
Confidence 4688999999999986543
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.68 E-value=1.6 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+.+++.||.|+|||+..-.+..+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 468999999999996554444333
No 243
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.66 E-value=0.57 Score=45.84 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=20.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
....+++.|++||||||+.-.+.-..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 446799999999999998766554433
No 244
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.59 E-value=1.1 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
..++++|+.||||||+.-.+.-+.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999876665443
No 245
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.58 E-value=0.39 Score=52.24 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=17.2
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
.+++++|++|+||||.+..+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 378999999999998765554
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.51 E-value=0.85 Score=42.40 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll 64 (726)
+..++++|+.||||||..-.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999997655433
No 247
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.49 E-value=0.4 Score=49.53 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=23.2
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHHhcCCCcEE
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLLAENMEPIL 72 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~lle~~~~~Ii 72 (726)
..++.+.|+||+||||||.+-.++--. .+.|+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~ 155 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVL 155 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc-CceEE
Confidence 367899999999999998876554222 34554
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=84.45 E-value=0.3 Score=48.08 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.1
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 36788999999999999986544
No 249
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.44 E-value=0.53 Score=44.09 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
..+.++++|++||||||+.-.+.-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999977655433
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.41 E-value=0.53 Score=45.71 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..+..++|.||+||||||.+-+++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3457899999999999998877765
No 251
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.36 E-value=0.31 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.5
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|+.+.|.||.||||||.+-.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999987554
No 252
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=84.32 E-value=2.4 Score=43.44 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=58.9
Q ss_pred CcEEEEcCCCChHhHHHHHHH---HhcCCCc-EEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEE
Q 004875 43 RVTLIVGETGCGKSSQVPQFL---LAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l---le~~~~~-Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv 118 (726)
+.+.++|++|+||||.+..+. ...+.+. ++-..+++.++....+.++...+..+-. .. ..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~-------~~----~~----- 162 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG-------EP----GE----- 162 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC-------CT----TC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe-------cC----CC-----
Confidence 467889999999998765553 2333332 3333455544443333333333322100 00 00
Q ss_pred EChHHHHHHHHhcCCCCCceeEEEEcccccccc--cccHHHHHHHHH-HhcCCCceEEEeccCC
Q 004875 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSV--ESDLVLVCVKQL-LLKKNDLRVVLMSATA 179 (726)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~--~~d~ll~~lk~l-~~~~~~lklIlmSATl 179 (726)
..|..++...... +...+|++||||=+- +.- ..+.+..-++.+ ....++.-++++.|+.
T Consensus 163 ~~p~~~~~~~l~~-~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 KDVVGIAKRGVEK-FLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp CCHHHHHHHHHHH-HHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred CCHHHHHHHHHHH-HHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1344443322211 001378999999987 433 333343333332 2235666777777764
No 253
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.24 E-value=1.4 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
...+++.||+|+|||+.+-.+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5689999999999997665443
No 254
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=84.23 E-value=0.39 Score=45.25 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
-.+++.|++|+|||+.+-.++
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999876654
No 255
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.19 E-value=0.51 Score=43.51 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.++|+|+.||||||+.-.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999765543
No 256
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.19 E-value=0.6 Score=44.13 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=22.1
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+..+..++++|+.||||||+.-.+.-..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999998766544333
No 257
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.94 E-value=0.63 Score=45.84 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=21.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+..++|.|++|+|||+...+++.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5689999999999999888887654
No 258
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.89 E-value=0.75 Score=43.56 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=22.3
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.+.....++|+|+.||||||+.-.+.-..+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344567899999999999998765544333
No 259
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.86 E-value=1.5 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.3
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
.++++++.||+|+|||+...+++.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999998888887654
No 260
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=83.81 E-value=0.33 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=19.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|+.+.|.||.||||||.+-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999987554
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=83.78 E-value=0.6 Score=44.07 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.+.|.||.||||||.+-.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999875554
No 262
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.69 E-value=0.43 Score=44.88 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
.+..++++|+.||||||+.-.+.-..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999876654333
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=83.69 E-value=0.54 Score=43.71 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll 64 (726)
..++++|+.||||||+.-.+.-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999998765543
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.64 E-value=0.5 Score=44.00 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..++|+|+.||||||+.-.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 5678999999999999765543
No 265
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=83.51 E-value=0.45 Score=44.94 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
..++++||.||||||.+-.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 468899999999999876654
No 266
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=83.45 E-value=0.53 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.+..+.|.|++||||||.+-.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999976544
No 267
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.39 E-value=0.65 Score=44.29 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCChHhHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ 62 (726)
+..+.++|++||||||.+-.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l 21 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKA 21 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHH
Confidence 467899999999999877554
No 268
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=83.34 E-value=0.41 Score=48.71 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=19.5
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||+||||||.+-.+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999987554
No 269
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.32 E-value=5.6 Score=41.11 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=16.3
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+++.++|++|+||||.+..+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999776554
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=83.25 E-value=0.37 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46788999999999999987554
No 271
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.16 E-value=0.44 Score=44.71 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.1
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+.|+|++||||||.+-.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467899999999998775553
No 272
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.14 E-value=1.4 Score=45.66 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCChHhHHHHHHHH
Q 004875 31 LREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 31 ~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
....+...+..++.+++.||+|+|||+.+-.+..
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHH
Confidence 3445556667789999999999999986654433
No 273
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.12 E-value=0.33 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|+.+.|+||+||||||.+-.+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHHHH
Confidence 36789999999999999987554
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.95 E-value=0.33 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.5
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||+||||||.+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46788999999999999987654
No 275
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=82.75 E-value=0.71 Score=45.84 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
...++|.|+.||||||+.-.+.-..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34789999999999998877654443
No 276
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.72 E-value=0.68 Score=45.40 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
..+..++|.||+|+||||.+.+++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999998888764
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=82.70 E-value=0.68 Score=44.12 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=24.0
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc-CCCcEEEecc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE-NMEPILCTQP 76 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~-~~~~Iivt~P 76 (726)
.+..++++|+.||||||+.-.+.-.. +...+.+..|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 45679999999999999876554332 2333444444
No 278
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=82.68 E-value=0.52 Score=43.99 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
-.++++|++|+|||+.+-.++..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999988777643
No 279
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.62 E-value=0.4 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=19.4
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 36788999999999999987554
No 280
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=82.56 E-value=0.4 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHHHH
Confidence 36788999999999999987554
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=82.54 E-value=0.56 Score=47.11 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=19.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHHHHH
Confidence 46788999999999999976544
No 282
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.47 E-value=0.5 Score=48.33 Aligned_cols=27 Identities=30% Similarity=0.355 Sum_probs=22.3
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHHH
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+..+..++|.|++|+||||.+.++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 345788999999999999988777654
No 283
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.44 E-value=0.47 Score=47.42 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.5
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|+.+.|.||.||||||.+-.+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999987554
No 284
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.43 E-value=0.82 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=18.9
Q ss_pred cEEEEcCCCChHhHHHHHHHHhcC
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.++|+|+.||||||+.-.+.-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999998776654444
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.39 E-value=0.59 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..+..++|.|+.||||||..-.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45678999999999999875443
No 286
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=82.36 E-value=6.6 Score=43.34 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=57.4
Q ss_pred cEEEEcCCCChHhHHHHHHHH---hcCCCcEEE-ecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEEEE
Q 004875 44 VTLIVGETGCGKSSQVPQFLL---AENMEPILC-TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll---e~~~~~Iiv-t~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Iiv~ 119 (726)
+++++|++|+||||.+-.+.. ..+.+..++ .-|.|.++....+..+...+..+ ++.. ...
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~~~------~~~------- 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF---YGSY------TEM------- 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EECC------CCS-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE---EccC------CCC-------
Confidence 688999999999987766543 334443333 33445444333333333323221 1100 000
Q ss_pred Ch-HHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccCC
Q 004875 120 TA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (726)
Q Consensus 120 T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (726)
.| .++.+.+..- ...+++++|||=+=....+.++...+.+......++.-++++.|+.
T Consensus 167 dp~~i~~~al~~~--~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 DPVIIASEGVEKF--KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp CHHHHHHHHHHHH--HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred CHHHHHHHHHHHH--HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 12 2222222210 0137899999998733333333333222211235677778888874
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.31 E-value=0.6 Score=44.02 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+..++++|+.||||||+.-.+.-..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999998766543333
No 288
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.27 E-value=0.71 Score=43.54 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..++|+|+.||||||+.-.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999765443
No 289
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.26 E-value=0.59 Score=46.43 Aligned_cols=23 Identities=17% Similarity=0.547 Sum_probs=19.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 36788999999999999987554
No 290
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.21 E-value=0.89 Score=43.90 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=18.8
Q ss_pred cEEEEcCCCChHhHHHHHHHHhcC
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.++|+|+.||||||+.-.+.-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999998776654443
No 291
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.21 E-value=0.67 Score=44.32 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.5
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
..++|+|+.||||||+.-.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999765543
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=81.96 E-value=0.51 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|+.+.|.||+||||||.+-.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999987554
No 293
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.95 E-value=0.43 Score=48.41 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=19.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999987554
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=81.92 E-value=0.55 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=19.4
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l 66 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATL 66 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999987554
No 295
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.87 E-value=0.98 Score=41.61 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
++++|.|+.||||||+.-.+--..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 7899999999999997655433334
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=81.84 E-value=0.44 Score=48.61 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=19.2
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 36788999999999999976544
No 297
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=81.81 E-value=0.44 Score=48.19 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=19.2
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 46788999999999999976543
No 298
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.78 E-value=0.51 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.5
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 36789999999999999987555
No 299
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.77 E-value=0.54 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=19.8
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|..+.|.||.||||||.+-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999875543
No 300
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.68 E-value=0.75 Score=46.59 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.2
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
+..+..++|.|++||||||.+.+++.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 55788999999999999998877763
No 301
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=81.68 E-value=0.66 Score=43.67 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle 65 (726)
...++++|++||||||+.-.+.-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999987655433
No 302
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.66 E-value=0.67 Score=47.82 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..+.++||+||||||.+-.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4578899999999998876653
No 303
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.57 E-value=0.83 Score=47.46 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHhHHH
Q 004875 43 RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~i 59 (726)
..++|+|||||||||..
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 304
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=81.48 E-value=2.1 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
....+++.||+|+|||+.+-.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34689999999999998654443
No 305
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.45 E-value=1.2 Score=42.07 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.5
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.+++.|+.||||||+.-.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999876553
No 306
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.45 E-value=0.82 Score=47.83 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHhHHH
Q 004875 43 RVTLIVGETGCGKSSQV 59 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~i 59 (726)
..++|+|||||||||..
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 47899999999999854
No 307
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=81.45 E-value=0.77 Score=47.39 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..+.++||+||||||.+-.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35689999999999998876653
No 308
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.25 E-value=0.93 Score=49.18 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh--cCCCcEEEecchHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFA 80 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle--~~~~~Iivt~Prrla 80 (726)
.+.+++|.|+||||||+.+..++.+ .....++++-|....
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCch
Confidence 4578999999999999776444332 123467777776543
No 309
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=81.19 E-value=0.84 Score=42.70 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=17.1
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
...+|+||+||||||.+-.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 378999999999998765543
No 310
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=81.19 E-value=0.8 Score=44.49 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll 64 (726)
+..+.|.|++||||||+.-.+.-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999997765543
No 311
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=81.11 E-value=1.1 Score=42.76 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHHHHHc-----CCcEEEEcCCCChHhHHHHHH
Q 004875 33 EKIVEKVLE-----NRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 33 ~~il~~i~~-----~~~vii~a~TGSGKTt~ip~~ 62 (726)
+++++.+.+ +..+.|+|++||||||.+-.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHH
Confidence 345555553 357899999999999876544
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.00 E-value=0.9 Score=42.51 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll 64 (726)
..+.|+|+.||||||.+...+-
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988766543
No 313
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=80.99 E-value=0.87 Score=45.11 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=21.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
....++|+|+.||||||++-.+.-..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999998876654433
No 314
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=80.91 E-value=0.72 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.4
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 36788999999999999987554
No 315
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=80.67 E-value=0.72 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=19.5
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|..+.|.||.||||||.+-.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46788999999999999987654
No 316
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.35 E-value=0.83 Score=42.89 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=16.8
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.++|.|+.||||||+.-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999876554
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.35 E-value=0.83 Score=43.38 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.++|.|+.||||||+.-.+.-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 578999999999998765543
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=80.34 E-value=0.76 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.4
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..+..+.|+|++||||||+.-.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34567899999999999976554
No 319
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.30 E-value=1.1 Score=47.83 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=26.0
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc--CCCcEEEecch
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~--~~~~Iivt~Pr 77 (726)
.+.+++|.|+||||||+.+-.++... ....+++.-|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999999999998776554432 22356666664
No 320
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=80.30 E-value=0.8 Score=42.77 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.+..++++|+.||||||+.-.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999876443
No 321
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=80.21 E-value=0.99 Score=41.12 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=16.3
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
...+|+||+|||||+.+-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46799999999999876443
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=80.21 E-value=0.8 Score=43.82 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+..+++.|+.||||||+.-.+.-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999998766543
No 323
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=79.95 E-value=1 Score=42.38 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll 64 (726)
..++++|+.||||||.+..++-
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999998766553
No 324
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=79.84 E-value=1.1 Score=43.15 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=18.8
Q ss_pred cEEEEcCCCChHhHHHHHHHHhcC
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.+++.|+.||||||+.-.+.-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999998766654444
No 325
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=79.82 E-value=0.69 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.+..+.|.|+.||||||++-.+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999987554
No 326
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.81 E-value=1.1 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
....+++.||+|+|||+.+-.+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la 66 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALA 66 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHH
Confidence 34679999999999998665443
No 327
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.77 E-value=1.3 Score=49.14 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCChHhHHHHHH
Q 004875 31 LREKIVEKVLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 31 ~Q~~il~~i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
....++.++..+..+++.||+|+|||+.+-.+
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraL 61 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRL 61 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHG
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHH
Confidence 34456666778899999999999999765443
No 328
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=79.77 E-value=1.4 Score=45.69 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.9
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
.+.|.||+||||||.+-.+
T Consensus 94 iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999876443
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.65 E-value=1.3 Score=42.13 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
..++++|+.||||||+.-.+.-..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999998765544334
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.53 E-value=1 Score=43.73 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+..+++.|+.||||||+.-.+.-..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999998766544433
No 331
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=79.44 E-value=1 Score=41.60 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=17.3
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
..++|+|+.||||||+.-.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999765544
No 332
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=79.43 E-value=0.59 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.|+.+.|.||.||||||.+-.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 5678999999999999987554
No 333
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=79.41 E-value=0.89 Score=42.77 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.+..++++|+.||||||+.-.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4567899999999999976554
No 334
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=79.38 E-value=0.99 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..++|+|+.||||||+.-.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999999765543
No 335
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.31 E-value=0.98 Score=43.56 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=19.7
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+..+..++++|+.||||||+.-.+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999999876554
No 336
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.26 E-value=1.4 Score=45.97 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.8
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
..+++.||+|+||||.+-.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 67999999999999876444
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=79.17 E-value=1 Score=43.78 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
...++|.|+.||||||+.-.+.-..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999998776654433
No 338
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=79.13 E-value=1.8 Score=50.56 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=58.8
Q ss_pred CcEEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEcc-cccccccCCCeeEEE
Q 004875 277 KSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN-IAESSVTIPKVAYVI 350 (726)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~--~~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTn-iae~GIdip~v~~VI 350 (726)
.+++|.+|++.=+.+.++.+... ..++.+..+||+++..++....+...+|. +|+|+|. .+...+.+.++.+||
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 68999999998777776665432 22578999999999999888888777776 9999996 445567888888877
No 339
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=78.84 E-value=0.6 Score=44.91 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.7
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.++|+|+.||||||++-.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999876553
No 340
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=78.72 E-value=1.3 Score=41.35 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
...++++|+.||||||+.-.+.-..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46789999999999998766543333
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=78.62 E-value=1 Score=42.29 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
..++++|+.||||||+.-.+.-..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999998765543333
No 342
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.56 E-value=1 Score=48.26 Aligned_cols=18 Identities=44% Similarity=0.630 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHhHHHH
Q 004875 43 RVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip 60 (726)
..++|+||||||||+...
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 468899999999997543
No 343
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=78.52 E-value=1.1 Score=42.94 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..++|+|+.||||||+.-.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999876554
No 344
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=78.48 E-value=1.3 Score=42.20 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=19.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
..++|+|+.||||||+.-.+.-..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999998766554443
No 345
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=78.39 E-value=6.2 Score=42.66 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=56.4
Q ss_pred CcEEEEcCCCChHhHHHHHHH---Hhc-CCCc-EEEecchHHHHHHHHHHHHhhcCCccCCeeeeeeccccccCCCCeEE
Q 004875 43 RVTLIVGETGCGKSSQVPQFL---LAE-NMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l---le~-~~~~-Iivt~Prrlaa~~~a~~va~~~~~~lg~~Vgy~v~~~~~~~~~~~Ii 117 (726)
++++++|++|+||||....+. ... +.+. ++-+-|.+.++......++...+..+-. ... .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~------~~~-----~---- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP------SDV-----G---- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC------CCS-----S----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe------CCC-----C----
Confidence 377889999999997765543 344 4432 3333455544443333333333322110 000 0
Q ss_pred EEChHHHHHHHHhcCCCCCceeEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEeccC
Q 004875 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSAT 178 (726)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHeR~~~~d~ll~~lk~l~-~~~~~lklIlmSAT 178 (726)
.+|..+++..... +...+|++||||=+= |.-..+.+...+..+. ...++.-++++.|+
T Consensus 166 -~dp~~i~~~~l~~-~~~~~~D~VIIDTpG-~l~~~~~l~~~L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 166 -QKPVDIVNAALKE-AKLKFYDVLLVDTAG-RLHVDEAMMDEIKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp -SCHHHHHHHHHHH-HHHTTCSEEEEECCC-CCTTCHHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred -CCHHHHHHHHHHH-HHhCCCCEEEEECCC-cccccHHHHHHHHHHHHhhcCcceeEEeecc
Confidence 1344443322211 001278999999975 3322233333333332 22455555556666
No 346
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=78.12 E-value=0.99 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
+.++.++|++||||||.+-.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4578999999999998876553
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=78.11 E-value=1.6 Score=40.83 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=18.7
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
..++|+|+.||||||+.-.+.-..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999997655543333
No 348
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=78.11 E-value=1.3 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
++.++|+|+.||||||+.-.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999765554
No 349
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=77.85 E-value=0.85 Score=48.15 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=19.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|..+.|.||.||||||.+-.+.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHHHHh
Confidence 467889999999999999876553
No 350
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=77.58 E-value=1.1 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.+..+.|.||+||||||.+-.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L 110 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVL 110 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHH
Confidence 4567899999999999876544
No 351
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=77.43 E-value=1.8 Score=43.70 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+.+++.||+||||||.+-.+.-..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 348999999999998776554443
No 352
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.33 E-value=1.5 Score=42.49 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+..+++.|+.||||||+.-.+.-..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999998766544443
No 353
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=77.28 E-value=1 Score=45.33 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChHhHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ 62 (726)
+..+.|.||.||||||.+-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 778999999999999987554
No 354
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=77.27 E-value=1.1 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..+++.|+.||||||++-.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999876654
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=77.24 E-value=1.2 Score=40.86 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=18.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHhcC
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.++|.|+.||||||+.-.+.-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999998755543334
No 356
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=77.19 E-value=1 Score=44.71 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=18.8
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+..+..+.|.||.||||||.+-.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 345668899999999999976554
No 357
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=77.14 E-value=1.3 Score=43.45 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
...+++.|+.||||||+.-.+.-..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999998766654443
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=77.05 E-value=1.3 Score=44.21 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=20.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.+..+.|.||+||||||..-.+.-..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999997655543333
No 359
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=76.99 E-value=1.2 Score=41.88 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=18.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll 64 (726)
-.++++|++|+|||+.+-.++-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999998877654
No 360
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=76.98 E-value=1.1 Score=46.52 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=22.5
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
+..+..++|.|++|+|||+...++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 445678999999999999888887755
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=76.97 E-value=1.3 Score=41.11 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.++|+|+.||||||+.-.+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 368999999999998754443
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=76.96 E-value=1.8 Score=43.34 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
...++++|+.||||||+.-.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 3568999999999999765543
No 363
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=76.90 E-value=0.96 Score=48.15 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=20.0
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|..+.|.||+||||||.+-.+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHHHHH
Confidence 467889999999999999876553
No 364
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=76.89 E-value=0.93 Score=45.01 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
..+.|.||.||||||.+-.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 678899999999999876543
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=76.87 E-value=1.2 Score=41.81 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.++++|+.||||||+.-.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999875543
No 366
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=76.74 E-value=1.2 Score=43.37 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=18.7
Q ss_pred cEEEEcCCCChHhHHHHHHHHhcC
Q 004875 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
.+++.|+.||||||+.-.+.-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999998866654433
No 367
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.71 E-value=1 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.+.+++.||+|+|||+.+-.+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 35689999999999986654443
No 368
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=76.61 E-value=1.4 Score=43.86 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
..++++|+.||||||+.-.+.-.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999977655443
No 369
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=76.35 E-value=0.98 Score=47.63 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.1
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..+.|.||.||||||.+-.+.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 467899999999999999876553
No 370
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.29 E-value=1.7 Score=44.02 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=16.8
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+.+++.||+||||||.+-.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 448999999999998765443
No 371
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=76.14 E-value=5.9 Score=37.29 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=41.3
Q ss_pred CCCCcHHHHHHHHHHHH--cCCcEEEEcCCCChHhHHHHHH---HHhcCCCcEEEecchHHHHHHHHH
Q 004875 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAK 86 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~--~~~~vii~a~TGSGKTt~ip~~---lle~~~~~Iivt~Prrlaa~~~a~ 86 (726)
...|=.+-|..++..+. ..+..+|.|.-|++|+.....- +.++....|.+..|...+++.+++
T Consensus 31 ~~~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 31 KSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp GCCCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSC
T ss_pred CccccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHh
Confidence 34555566778888775 4578999999999999663222 334444567777776665555443
No 372
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=76.06 E-value=1 Score=48.19 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=20.5
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..+..+.|.||+||||||.+-.+.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHHHh
Confidence 3467899999999999999875553
No 373
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=75.98 E-value=2.3 Score=43.49 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHhHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~ 61 (726)
..+.|+|++||||||..-.
T Consensus 32 ~ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3678999999999987543
No 374
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=75.97 E-value=1.4 Score=41.98 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=15.8
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
.+.|+|+.||||||+.-.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5889999999999976444
No 375
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.79 E-value=1.9 Score=44.70 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
.+..++|.|++|||||+...+++.+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45789999999999999988887753
No 376
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=75.71 E-value=1.1 Score=47.46 Aligned_cols=24 Identities=21% Similarity=0.594 Sum_probs=19.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|..+.|.||.||||||.+-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHH
Confidence 367889999999999999876553
No 377
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=75.64 E-value=1.4 Score=46.63 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=16.0
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
.++|+|||||||||.+-.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai 43 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAI 43 (365)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6789999999999887444
No 378
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.47 E-value=2.4 Score=44.48 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+.+++.||+|+|||+.+-.+..+.+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999987666554443
No 379
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=75.45 E-value=1.2 Score=46.27 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.0
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
..+..++|.||+|+|||+...++..+
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34577899999999999887777654
No 380
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=75.44 E-value=1.1 Score=47.38 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=19.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..+.|.||.||||||.+-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHHHh
Confidence 367889999999999999876553
No 381
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=75.27 E-value=2.1 Score=40.12 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=18.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.++++|++|+|||+.+-.++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999988776643
No 382
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=75.22 E-value=2.6 Score=41.01 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=20.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+..+++.|+.||||||++-...-.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999987665443
No 383
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=75.21 E-value=1.4 Score=42.07 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=16.0
Q ss_pred cEEEEcCCCChHhHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ 62 (726)
.+.|.|+.||||||..-.+
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999976554
No 384
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=75.15 E-value=1 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|..+.|.||.||||||.+-.+.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHH
Confidence 467889999999999999876553
No 385
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=74.46 E-value=1.2 Score=42.44 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=18.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..+..++++|++|+||||.+-.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 34567999999999999976443
No 386
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=74.44 E-value=1.2 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.623 Sum_probs=19.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..+.|.||.||||||.+-.+.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHH
Confidence 367889999999999999876553
No 387
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=74.40 E-value=1.2 Score=47.03 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|..+.|.||.||||||.+-.+.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHh
Confidence 467899999999999999875543
No 388
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=74.31 E-value=1.9 Score=40.32 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.9
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.++++|++|+|||+.+-.++-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999998876654
No 389
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.27 E-value=4.8 Score=46.14 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=48.3
Q ss_pred CCCCcHHHHHHHHHHHH----cCC-cEEEEcCCCChHhHHHHHHHHhcCCCcEEEecchHHHHHHHHHHHHhhcC
Q 004875 24 SSLPVMSLREKIVEKVL----ENR-VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN 93 (726)
Q Consensus 24 ~~LPi~~~Q~~il~~i~----~~~-~vii~a~TGSGKTt~ip~~lle~~~~~Iivt~Prrlaa~~~a~~va~~~~ 93 (726)
..++.+..|.+.+..+. ++. ..++.|-||||||..+...+.... +.++++.|..-.|.+++..+...++
T Consensus 9 ~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~~-~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 9 SKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVN-KPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHC-CCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHHcC
Confidence 34566667776666543 343 467899999999988877665544 3566777777777888888877654
No 390
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=73.83 E-value=1.6 Score=41.30 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=16.9
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
..+.|+|++||||||+.-.+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999765543
No 391
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=73.71 E-value=1.8 Score=48.31 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=22.0
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..+..+.|.||+||||||.+-+++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 34467999999999999999988854
No 392
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=73.57 E-value=1.8 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
++.+++|.|.||||||+.+-.++
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHH
Confidence 45789999999999997765544
No 393
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.53 E-value=1.3 Score=47.45 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.5
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+..+.|.||+||||||.+.+++..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4688999999999999999877644
No 394
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=73.41 E-value=2.4 Score=39.99 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=22.4
Q ss_pred EEEEcCCCChHhHHHHHHHHhcCCCcEEEecc
Q 004875 45 TLIVGETGCGKSSQVPQFLLAENMEPILCTQP 76 (726)
Q Consensus 45 vii~a~TGSGKTt~ip~~lle~~~~~Iivt~P 76 (726)
++|.|++|||||+..-++... +. .++++.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~-~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP-QVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS-SEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC-CeEEEec
Confidence 689999999999988887766 43 4444444
No 395
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.38 E-value=1.5 Score=46.06 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
.++.+.|.||+||||||.+.+++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999988887654
No 396
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=73.32 E-value=2.8 Score=45.10 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=17.3
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.+.|.|++|+||||.+-.+.
T Consensus 71 ~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 89999999999999875543
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=73.30 E-value=1.5 Score=41.08 Aligned_cols=21 Identities=29% Similarity=0.669 Sum_probs=17.9
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.++++|++|+|||+.+-.++-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999998766654
No 398
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.16 E-value=2.8 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
...+++.||+|+|||+.+-.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4579999999999997654443
No 399
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=73.15 E-value=2.8 Score=40.67 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=18.7
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..+..+++.|+.||||||++-..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHH
Confidence 35678899999999999987554
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=73.13 E-value=1.7 Score=41.91 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
..++|+|+.||||||+.-.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999976554
No 401
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=73.13 E-value=2.5 Score=45.20 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=56.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHhhccCCCc-EEEEEccccc----ccccCCCeeEE
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAE----SSVTIPKVAYV 349 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~-~~~~v~~lh~~l~~~er~~~~~~f~~~r-kVlvaTniae----~GIdip~v~~V 349 (726)
++.+||.+|+++=+.+.++.++... .++.+..+||+.+..++....+....+. +|+|+|+-.- .-+...++.+|
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~i 143 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFV 143 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEE
Confidence 4689999999999888888777543 3678999999999977766666666664 9999996321 12455677777
Q ss_pred E
Q 004875 350 I 350 (726)
Q Consensus 350 I 350 (726)
|
T Consensus 144 V 144 (414)
T 3oiy_A 144 F 144 (414)
T ss_dssp E
T ss_pred E
Confidence 6
No 402
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=73.08 E-value=1.9 Score=45.81 Aligned_cols=24 Identities=21% Similarity=0.646 Sum_probs=19.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..+..+.|.||.||||||.+-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHH
Confidence 367889999999999999876553
No 403
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=73.05 E-value=2 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.++.++|.|++||||||...+++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999988877654
No 404
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=73.01 E-value=1.7 Score=44.86 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+..+.|+|++||||||.+-.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999765443
No 405
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=72.87 E-value=1.8 Score=45.86 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=16.9
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
...+|+|+||+|||+.+-.+.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 567999999999998765443
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=72.83 E-value=2.1 Score=41.61 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
++..+++.|+.||||||++-..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999987554
No 407
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=72.80 E-value=2.3 Score=44.56 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+..++|.|++|||||+...+++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999998888776
No 408
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=72.67 E-value=1.1 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQ 61 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~ 61 (726)
..|+.+.|+||+||||||.+-.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~ 386 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINL 386 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHH
Confidence 4678999999999999997643
No 409
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=72.59 E-value=1 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=19.9
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|..+.|.||.||||||.+-.+.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 467889999999999999876553
No 410
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=72.51 E-value=2 Score=38.52 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.+++.|++|+|||+.+-.++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999988777643
No 411
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=72.45 E-value=1.8 Score=43.68 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
++.|+||+|+||||.+-.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999875554
No 412
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=72.35 E-value=2.1 Score=41.15 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=16.5
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
...+|+||+|||||+.+-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 57899999999999876444
No 413
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=72.04 E-value=1.6 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.1
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+..|..+.|.||+||||||.+-.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L 158 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTL 158 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHH
Confidence 347889999999999999976554
No 414
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=71.78 E-value=1.6 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|+.+.|+||+||||||.+-...
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999999876553
No 415
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=71.68 E-value=2.1 Score=38.37 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|++|+|||+.+-.++-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999998766654
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=71.37 E-value=1.7 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.++.++|.||+||||||.+-...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999775554
No 417
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=71.29 E-value=2 Score=45.22 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.2
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+..++|.||+||||||.+.+++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999988887654
No 418
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=71.08 E-value=2.2 Score=38.49 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|++|+|||+.+-.++-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999998877653
No 419
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=71.02 E-value=6.2 Score=37.23 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=51.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHhhccCCCcEEEEEcc-----ccc-ccccCCCeeEE
Q 004875 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN-----IAE-SSVTIPKVAYV 349 (726)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~v~~lh~~l~~~er~~~~~~f~~~rkVlvaTn-----iae-~GIdip~v~~V 349 (726)
+.++||.+|+++-+.+..+.+......+.+..++|+.+..++...+. .+..|+|+|. ... ..++..++.+|
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 148 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---RGADAVVATPGRALDYLRQGVLDLSRVEVA 148 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---HCCSEEEECHHHHHHHHHHTSSCCTTCSEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---CCCCEEEECHHHHHHHHHcCCcchhhceEE
Confidence 46899999999999988888876655678888999887655433332 2348999995 222 24566777777
Q ss_pred E
Q 004875 350 I 350 (726)
Q Consensus 350 I 350 (726)
|
T Consensus 149 V 149 (207)
T 2gxq_A 149 V 149 (207)
T ss_dssp E
T ss_pred E
Confidence 6
No 420
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.01 E-value=3.1 Score=53.28 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.0
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
+..++++++.|++|||||+...+++.+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999998888764
No 421
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=70.95 E-value=2.4 Score=41.94 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
.+..+++.|+.||||||++-.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5678999999999999987654
No 422
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=70.94 E-value=2.2 Score=40.11 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.++|.|+.|+||||.+-.+.-
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 579999999999998876653
No 423
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=70.90 E-value=2.2 Score=40.34 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=17.6
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|+.|+||||.+-.++-
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 478999999999998876654
No 424
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=70.71 E-value=1.8 Score=47.28 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
+..+..++|.|++|+|||+.+.++...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 445688999999999999888877654
No 425
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=70.70 E-value=1.9 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
++.+.|+|++||||||++-.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 7789999999999999876553
No 426
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.36 E-value=3.1 Score=46.01 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=24.3
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHhcC
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN 67 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle~~ 67 (726)
+..+..++|.|++|+|||+...+++.+..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 44678999999999999999988887643
No 427
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=70.35 E-value=1.3 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.2
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|+.+.|+||+||||||.+-..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999976444
No 428
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=70.14 E-value=2.2 Score=44.07 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.+..++|.|++|+|||+...+++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999998888765
No 429
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=70.11 E-value=2.4 Score=39.59 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
-.+++.|++|+|||+.+-.++-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999988776644
No 430
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=69.96 E-value=2.1 Score=41.31 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHhHHHH
Q 004875 43 RVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip 60 (726)
+.+++.||.|+|||+.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp SEEEEESCGGGCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 369999999999997653
No 431
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=69.95 E-value=2.1 Score=42.04 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=16.3
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..+..+++.|+.||||||++-..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 46778999999999999987554
No 432
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=69.84 E-value=1.6 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.6
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|+.+.|+||+||||||.+-..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999987654
No 433
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=69.82 E-value=1.7 Score=45.38 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=16.5
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
...+|+||+|||||+.+-.+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56799999999999876543
No 434
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=69.77 E-value=3.7 Score=47.10 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=30.7
Q ss_pred CCCCc--HHHHHHHHHHHH---cCCcEEEEcCCCChHhH---HHHHHHHhcC
Q 004875 24 SSLPV--MSLREKIVEKVL---ENRVTLIVGETGCGKSS---QVPQFLLAEN 67 (726)
Q Consensus 24 ~~LPi--~~~Q~~il~~i~---~~~~vii~a~TGSGKTt---~ip~~lle~~ 67 (726)
.++|. +++-+.+...+. ++|.+||+|++|||||. .+.+++....
T Consensus 71 ~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~ 122 (697)
T 1lkx_A 71 YEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVS 122 (697)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhc
Confidence 34554 666667766664 56899999999999993 4556665443
No 435
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=69.76 E-value=4.2 Score=38.80 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=22.1
Q ss_pred EEEEcCCCChHhHHHHHH---HHhcCCCcEEEecch
Q 004875 45 TLIVGETGCGKSSQVPQF---LLAENMEPILCTQPR 77 (726)
Q Consensus 45 vii~a~TGSGKTt~ip~~---lle~~~~~Iivt~Pr 77 (726)
+++.|.-|||||||+-.. +.+.+...+..-.|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~ 38 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 578899999999987554 444555444444553
No 436
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=69.73 E-value=2.5 Score=38.74 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=18.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.++++|++|+|||+.+-.++-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999988776643
No 437
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=69.73 E-value=1.4 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.0
Q ss_pred HcCCcEEEEcCCCChHhHHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
..|+.+.|+||+||||||.+-...
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 467899999999999999875543
No 438
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=69.68 E-value=3.3 Score=42.48 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=20.7
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..++.+.+.|++|+||||++-.++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH
Confidence 3457889999999999999876655
No 439
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=69.43 E-value=2.6 Score=37.86 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=17.6
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|++|+|||+.+-.++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999998766654
No 440
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=69.40 E-value=3.3 Score=43.59 Aligned_cols=25 Identities=36% Similarity=0.711 Sum_probs=20.8
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
...++.+.+.|++|+||||++-.++
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCccHHHHHHHHh
Confidence 4578899999999999999875554
No 441
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=69.28 E-value=2.6 Score=38.08 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|++|+|||+.+-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999998876654
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=69.25 E-value=2.3 Score=43.30 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll 64 (726)
..++++|+.||||||+.-.+.-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998765543
No 443
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=69.11 E-value=2.6 Score=38.41 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.6
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.+++.|++|+|||+.+-.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57999999999999887765
No 444
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=69.08 E-value=2.7 Score=38.05 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=18.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.+++.|++|+|||+.+-.++-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999988776543
No 445
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=69.00 E-value=2.9 Score=40.13 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=17.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
..+++|+.|||||+.....+.+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5689999999999876665544
No 446
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=68.95 E-value=2.7 Score=37.85 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|++|+|||+.+-.++-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999998776653
No 447
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=68.84 E-value=2.6 Score=38.07 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=18.3
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.+++.|++|+|||+.+-.++-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999988777643
No 448
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.59 E-value=4.2 Score=44.31 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=19.1
Q ss_pred HHHHHHcC----CcEEEEcCCCChHhHHHH
Q 004875 35 IVEKVLEN----RVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 35 il~~i~~~----~~vii~a~TGSGKTt~ip 60 (726)
+++.+..+ +.+++.||+|+|||+..-
T Consensus 52 ~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 52 IVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 34455444 579999999999997543
No 449
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=68.36 E-value=3.4 Score=45.26 Aligned_cols=26 Identities=23% Similarity=0.572 Sum_probs=19.3
Q ss_pred HHHHHHH--cCCcEEEEcCCCChHhHHH
Q 004875 34 KIVEKVL--ENRVTLIVGETGCGKSSQV 59 (726)
Q Consensus 34 ~il~~i~--~~~~vii~a~TGSGKTt~i 59 (726)
.++..+. ...++++.||+|+|||+.+
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 3455553 3468999999999999754
No 450
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=68.22 E-value=3 Score=43.97 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.4
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
.++.++|.|++|+|||+...+++.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999888777654
No 451
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=67.89 E-value=2.9 Score=37.80 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=17.6
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|++|+|||+.+-.++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999998866653
No 452
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.86 E-value=2.7 Score=40.05 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
-.+.|+|+.||||||..-.+.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999765543
No 453
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=67.84 E-value=2.6 Score=39.19 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
..+++.|++|+|||+.+-.++-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999988776543
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=67.80 E-value=2.1 Score=42.85 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCChHhHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+...++|.|+.||||||+.-.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L 44 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNIL 44 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999987443
No 455
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=67.72 E-value=3.3 Score=42.41 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=19.6
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
+..++.+.+.||+|+||||++-.+
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHh
Confidence 346788999999999999977544
No 456
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=67.71 E-value=2.6 Score=39.33 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.7
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll 64 (726)
-.++++|++|+|||+.+-.++-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999998877653
No 457
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=67.63 E-value=1.9 Score=44.64 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=17.3
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
...+|+||+|||||+.+-.+.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 488999999999998765543
No 458
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=67.62 E-value=2.9 Score=37.62 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=17.5
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.++++|++|+|||+.+-.++-
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999998766653
No 459
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=67.55 E-value=3 Score=38.13 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=18.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.+++.|++|+|||+.+-.++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999988776543
No 460
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=67.55 E-value=2.3 Score=46.24 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=22.3
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
+..+..++|.|++|+|||+...++...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 445688999999999999888777654
No 461
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=67.52 E-value=3.1 Score=39.96 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHh
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle 65 (726)
-..++++|.+|+||||.+-.++..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999988777655
No 462
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=67.36 E-value=4.3 Score=47.32 Aligned_cols=43 Identities=23% Similarity=0.537 Sum_probs=31.2
Q ss_pred CCCCC--cHHHHHHHHHHHH---cCCcEEEEcCCCChHhH---HHHHHHHh
Q 004875 23 FSSLP--VMSLREKIVEKVL---ENRVTLIVGETGCGKSS---QVPQFLLA 65 (726)
Q Consensus 23 r~~LP--i~~~Q~~il~~i~---~~~~vii~a~TGSGKTt---~ip~~lle 65 (726)
+.++| |+++-+.+...+. ++|.+||+|+.|||||. .+.+|+..
T Consensus 116 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~ 166 (784)
T 2v26_A 116 LGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTE 166 (784)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHHh
Confidence 45566 4777777777664 57899999999999993 45555553
No 463
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=67.30 E-value=6.3 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHhc
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
++.+.|.||.||||||....++.+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999998888653
No 464
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=67.19 E-value=2.4 Score=44.26 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.0
Q ss_pred HHHcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 38 KVLENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 38 ~i~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
-+..+..++|.|++|+|||+.+.++...
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456789999999999999888777654
No 465
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=67.15 E-value=3.4 Score=37.73 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll 64 (726)
...+++.|++|+|||+.+-.++-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999998877654
No 466
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=67.14 E-value=4.4 Score=48.72 Aligned_cols=43 Identities=23% Similarity=0.537 Sum_probs=31.0
Q ss_pred CCCCC--cHHHHHHHHHHHH---cCCcEEEEcCCCChHhH---HHHHHHHh
Q 004875 23 FSSLP--VMSLREKIVEKVL---ENRVTLIVGETGCGKSS---QVPQFLLA 65 (726)
Q Consensus 23 r~~LP--i~~~Q~~il~~i~---~~~~vii~a~TGSGKTt---~ip~~lle 65 (726)
+.++| |+++-+.+...+. .+|.+||+|++|||||. .+.+++..
T Consensus 120 ~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~ 170 (1052)
T 4anj_A 120 LGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTE 170 (1052)
T ss_dssp BTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHH
Confidence 44566 4677777777765 56899999999999993 35555543
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=67.13 E-value=2.6 Score=41.45 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..+++.|..||||||+.-.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 3468999999999999875443
No 468
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=67.07 E-value=3.1 Score=37.67 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.+++.|++|+|||+.+-.++-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999988766543
No 469
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=67.00 E-value=2.9 Score=39.95 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHh
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle 65 (726)
-.++++|++|+|||+.+-.++-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999988776543
No 470
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=66.87 E-value=6.3 Score=42.70 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=17.0
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
+++++.||+|+|||+..-.+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA 71 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLA 71 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 689999999999998654433
No 471
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=66.81 E-value=2.6 Score=39.21 Aligned_cols=20 Identities=40% Similarity=0.737 Sum_probs=17.3
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.++++|++|+|||+.+-.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57999999999999887765
No 472
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=66.80 E-value=3.1 Score=38.60 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ll 64 (726)
-.+++.|++|+|||+.+-.++-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999998877753
No 473
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=66.64 E-value=1.8 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.5
Q ss_pred HcCCcEEEEcCCCChHhHHHHHH
Q 004875 40 LENRVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 40 ~~~~~vii~a~TGSGKTt~ip~~ 62 (726)
..|+.+.|+||+||||||.+-..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999987554
No 474
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=66.34 E-value=3.2 Score=37.41 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|++|+|||+.+-.++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999998866654
No 475
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=66.11 E-value=4.8 Score=38.66 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.6
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQF 62 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~ 62 (726)
+-+++.|.-|||||||+-..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L 22 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEV 22 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46788999999999987544
No 476
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=66.10 E-value=29 Score=42.37 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=25.7
Q ss_pred HHHHHHHHHHH----cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 30 SLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 30 ~~Q~~il~~i~----~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
..-+++.+.+. ..+.+.|+|+-|.||||++.++..+
T Consensus 131 ~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 131 KLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 44455666663 2357889999999999988776543
No 477
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=66.08 E-value=3 Score=38.41 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 004875 42 NRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 42 ~~~vii~a~TGSGKTt~ip~~ll 64 (726)
+..++++|++|+||||++-.+.-
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999998876653
No 478
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=66.00 E-value=3.6 Score=40.46 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
..-.+.|.||+||||||+.-.+.-.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999977655433
No 479
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=65.87 E-value=3.1 Score=38.94 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHH
Q 004875 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 41 ~~~~vii~a~TGSGKTt~ip~~ll 64 (726)
.++-+++.|+.|+||||....++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356789999999999988766654
No 480
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=65.84 E-value=3.3 Score=37.83 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=18.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.++++|++|+|||+.+-.++-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999987666543
No 481
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=65.82 E-value=2.5 Score=45.95 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHHHh
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~lle 65 (726)
+..+..++|.|++|+|||+...++..+
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 335678999999999999888887654
No 482
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=65.75 E-value=3.4 Score=37.42 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.0
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.+++.|++|+|||+.+-.++
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999887664
No 483
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=65.71 E-value=4.9 Score=46.76 Aligned_cols=43 Identities=35% Similarity=0.600 Sum_probs=30.6
Q ss_pred CCCCC--cHHHHHHHHHHHH---cCCcEEEEcCCCChHhH---HHHHHHHh
Q 004875 23 FSSLP--VMSLREKIVEKVL---ENRVTLIVGETGCGKSS---QVPQFLLA 65 (726)
Q Consensus 23 r~~LP--i~~~Q~~il~~i~---~~~~vii~a~TGSGKTt---~ip~~lle 65 (726)
+..+| |+++-+.+...+. ++|.+||+|+.|+|||. .+.+++..
T Consensus 147 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~ 197 (783)
T 4db1_A 147 RSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAV 197 (783)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhh
Confidence 34455 4677777777665 56899999999999994 35556543
No 484
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=65.69 E-value=3.3 Score=37.76 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=17.8
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|++|+|||+.+-.++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999998776653
No 485
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=65.67 E-value=4.8 Score=46.92 Aligned_cols=44 Identities=16% Similarity=0.439 Sum_probs=30.9
Q ss_pred CCCCC--cHHHHHHHHHHHH---cCCcEEEEcCCCChHhH---HHHHHHHhc
Q 004875 23 FSSLP--VMSLREKIVEKVL---ENRVTLIVGETGCGKSS---QVPQFLLAE 66 (726)
Q Consensus 23 r~~LP--i~~~Q~~il~~i~---~~~~vii~a~TGSGKTt---~ip~~lle~ 66 (726)
+..+| |+++-+.+...+. ++|.+||+|+.|+|||. .+.+|+..-
T Consensus 132 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~ 183 (795)
T 1w7j_A 132 MGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATV 183 (795)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred ccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHhh
Confidence 34566 4666667776664 56899999999999993 455666543
No 486
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=65.58 E-value=3.4 Score=37.55 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.+++.|++|+|||+.+-.++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999999886665
No 487
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=65.57 E-value=2.9 Score=43.66 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=22.7
Q ss_pred HHHHHHH----cCCcEEEEcCCCChHhHHHHHHH
Q 004875 34 KIVEKVL----ENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 34 ~il~~i~----~~~~vii~a~TGSGKTt~ip~~l 63 (726)
.+++.+. .+..+.|.|++|+||||.+-.++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4555543 46789999999999999876654
No 488
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=65.46 E-value=3.5 Score=39.68 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHhc
Q 004875 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~lle~ 66 (726)
..++++|..|+||||.+-.++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568899999999999988887653
No 489
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=65.38 E-value=3.1 Score=39.39 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.+.|.|+.||||||+.-.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999765543
No 490
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=64.98 E-value=3.1 Score=42.13 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.4
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
..++|+|+.||||||+.-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999776554
No 491
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=64.75 E-value=3.5 Score=38.28 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.1
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.++++|++|+|||+.+-.++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999998877664
No 492
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=64.70 E-value=3.2 Score=42.85 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=19.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.+.|.||+|+||||...+++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999998888765
No 493
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=64.69 E-value=3.2 Score=41.11 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHhHHHH
Q 004875 43 RVTLIVGETGCGKSSQVP 60 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip 60 (726)
..+.|.|+.||||||+.-
T Consensus 23 ~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 368899999999998654
No 494
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=64.62 E-value=2.3 Score=45.82 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=19.8
Q ss_pred HHcCCc--EEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRV--TLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~--vii~a~TGSGKTt~ip~~l 63 (726)
+..|.. +.|+|++|+||||++-.++
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 457788 9999999999999876543
No 495
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=64.48 E-value=3.6 Score=37.48 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=18.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHh
Q 004875 44 VTLIVGETGCGKSSQVPQFLLA 65 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~lle 65 (726)
.++++|++|+|||+.+-.++-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999988776543
No 496
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=64.43 E-value=3.6 Score=37.87 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~l 63 (726)
.++++|++|+|||+.+-.++
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67999999999999877665
No 497
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=64.36 E-value=3.4 Score=38.26 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=17.8
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 004875 44 VTLIVGETGCGKSSQVPQFLL 64 (726)
Q Consensus 44 ~vii~a~TGSGKTt~ip~~ll 64 (726)
.+++.|++|+|||+.+-.++-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999998877663
No 498
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=64.36 E-value=3.6 Score=40.29 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=17.9
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 004875 43 RVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 43 ~~vii~a~TGSGKTt~ip~~l 63 (726)
-.++++|++|+||||.+-.++
T Consensus 30 ~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999886665
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=64.31 E-value=2.7 Score=47.00 Aligned_cols=25 Identities=44% Similarity=0.504 Sum_probs=21.3
Q ss_pred HHcCCcEEEEcCCCChHhHHHHHHH
Q 004875 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (726)
Q Consensus 39 i~~~~~vii~a~TGSGKTt~ip~~l 63 (726)
+..|..+.|+||.||||||.+-.+.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHh
Confidence 4678899999999999999876654
No 500
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=64.26 E-value=5.2 Score=46.39 Aligned_cols=43 Identities=28% Similarity=0.504 Sum_probs=29.3
Q ss_pred CCCCCc--HHHHHHHHHHHH---cCCcEEEEcCCCChHhHH---HHHHHHh
Q 004875 23 FSSLPV--MSLREKIVEKVL---ENRVTLIVGETGCGKSSQ---VPQFLLA 65 (726)
Q Consensus 23 r~~LPi--~~~Q~~il~~i~---~~~~vii~a~TGSGKTt~---ip~~lle 65 (726)
+..+|. +++-+.+...+. ++|.+||+|+.|+|||.. +.+++..
T Consensus 148 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~ 198 (770)
T 1w9i_A 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLAS 198 (770)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHH
Confidence 344554 566666666654 568999999999999943 4455543
Done!