Query 004876
Match_columns 726
No_of_seqs 223 out of 958
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 14:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5594 Uncharacterized integr 100.0 6E-121 1E-125 1007.8 54.1 662 2-674 20-722 (827)
2 KOG1134 Uncharacterized conser 100.0 3E-116 7E-121 1007.5 60.7 686 7-707 8-709 (728)
3 PF02714 DUF221: Domain of unk 100.0 2.3E-66 5E-71 558.8 36.3 323 316-638 1-325 (325)
4 PF13967 RSN1_TM: Late exocyto 100.0 4.2E-34 9.2E-39 273.9 13.5 156 5-168 1-157 (157)
5 PF14703 DUF4463: Domain of un 99.1 2.7E-10 6E-15 97.4 6.8 71 227-297 1-85 (85)
6 PF04547 Anoctamin: Calcium-ac 99.0 1E-07 2.2E-12 107.6 28.2 262 356-638 109-397 (452)
7 KOG2513 Protein required for m 98.0 0.0045 9.6E-08 69.3 26.5 237 358-625 260-543 (647)
8 TIGR01659 sex-lethal sex-letha 96.8 0.003 6.4E-08 68.4 7.8 40 186-231 104-143 (346)
9 PLN03134 glycine-rich RNA-bind 96.0 0.049 1.1E-06 51.4 9.7 36 188-229 33-68 (144)
10 KOG0144 RNA-binding protein CU 95.8 0.033 7.2E-07 59.6 8.6 136 187-337 32-189 (510)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 95.6 0.077 1.7E-06 57.8 10.9 101 189-371 3-111 (352)
12 PLN03120 nucleic acid binding 95.5 0.089 1.9E-06 53.9 9.9 34 189-228 4-37 (260)
13 PF00076 RRM_1: RNA recognitio 95.4 0.053 1.2E-06 43.4 6.8 32 192-229 1-32 (70)
14 TIGR01628 PABP-1234 polyadenyl 95.2 0.058 1.3E-06 62.8 8.6 170 191-371 2-200 (562)
15 KOG0149 Predicted RNA-binding 95.0 0.062 1.4E-06 53.3 6.6 34 190-229 13-46 (247)
16 TIGR01648 hnRNP-R-Q heterogene 94.4 0.15 3.4E-06 58.6 9.1 39 188-232 57-95 (578)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 94.1 0.21 4.6E-06 54.3 9.4 36 189-230 269-304 (352)
18 PF04059 RRM_2: RNA recognitio 94.1 0.27 5.8E-06 42.8 7.9 25 312-336 44-68 (97)
19 PF14259 RRM_6: RNA recognitio 93.8 0.19 4.2E-06 40.5 6.2 31 192-228 1-31 (70)
20 KOG0122 Translation initiation 93.6 0.24 5.3E-06 49.5 7.6 37 188-230 188-224 (270)
21 KOG0125 Ataxin 2-binding prote 93.5 0.38 8.3E-06 50.1 8.9 90 188-361 95-196 (376)
22 KOG0148 Apoptosis-promoting RN 92.2 0.28 6.2E-06 49.7 5.8 115 188-333 5-124 (321)
23 TIGR01628 PABP-1234 polyadenyl 91.9 1.1 2.5E-05 52.1 11.6 39 187-231 176-214 (562)
24 TIGR01648 hnRNP-R-Q heterogene 91.3 0.9 1.9E-05 52.5 9.5 39 312-350 268-308 (578)
25 TIGR01645 half-pint poly-U bin 90.5 1.3 2.7E-05 51.5 9.8 86 188-355 203-290 (612)
26 KOG0145 RNA-binding protein EL 90.2 1.2 2.5E-05 44.9 7.9 145 191-349 43-209 (360)
27 TIGR01622 SF-CC1 splicing fact 90.1 2.1 4.6E-05 48.4 11.2 36 188-229 88-123 (457)
28 KOG0127 Nucleolar protein fibr 89.3 1.4 3.1E-05 49.0 8.3 33 190-228 293-325 (678)
29 KOG4211 Splicing factor hnRNP- 89.0 0.56 1.2E-05 51.5 5.0 37 187-230 8-44 (510)
30 KOG4206 Spliceosomal protein s 88.8 1.4 3.1E-05 43.7 7.3 45 311-355 50-96 (221)
31 KOG0117 Heterogeneous nuclear 87.2 4.3 9.3E-05 44.3 10.1 38 187-230 81-118 (506)
32 PLN03121 nucleic acid binding 86.9 0.99 2.1E-05 45.7 5.0 37 188-230 4-40 (243)
33 TIGR01642 U2AF_lg U2 snRNP aux 86.8 2.8 6.1E-05 48.1 9.5 36 188-229 294-329 (509)
34 KOG4212 RNA-binding protein hn 86.1 3.2 7E-05 44.9 8.5 37 185-226 40-76 (608)
35 KOG2514 Uncharacterized conser 85.8 7 0.00015 46.1 11.7 51 421-471 438-488 (861)
36 TIGR01622 SF-CC1 splicing fact 85.7 3.6 7.9E-05 46.5 9.5 37 187-229 184-220 (457)
37 TIGR01649 hnRNP-L_PTB hnRNP-L/ 85.4 7.3 0.00016 44.5 11.8 38 187-230 273-311 (481)
38 TIGR01645 half-pint poly-U bin 85.1 2.5 5.4E-05 49.1 7.7 37 188-230 106-142 (612)
39 KOG0109 RNA-binding protein LA 84.9 0.8 1.7E-05 47.0 3.2 36 192-233 5-40 (346)
40 PF13893 RRM_5: RNA recognitio 81.1 2.5 5.4E-05 32.4 4.0 24 313-336 21-44 (56)
41 smart00362 RRM_2 RNA recogniti 80.1 2.8 6.1E-05 32.7 4.3 34 191-230 1-34 (72)
42 KOG1548 Transcription elongati 78.9 6.2 0.00013 41.7 7.1 45 292-336 285-337 (382)
43 PF07810 TMC: TMC domain; Int 76.6 18 0.00039 32.3 8.5 54 551-609 47-105 (111)
44 KOG0113 U1 small nuclear ribon 72.4 12 0.00027 38.8 7.2 37 188-230 100-136 (335)
45 KOG0107 Alternative splicing f 72.2 3.4 7.3E-05 39.6 2.9 43 303-345 37-81 (195)
46 cd00590 RRM RRM (RNA recogniti 71.7 6.8 0.00015 30.6 4.4 33 191-229 1-33 (74)
47 smart00361 RRM_1 RNA recogniti 71.1 5.1 0.00011 32.4 3.5 26 311-336 35-60 (70)
48 PF07292 NID: Nmi/IFP 35 domai 65.7 1 2.2E-05 38.4 -1.7 18 186-203 49-66 (88)
49 KOG1365 RNA-binding protein Fu 65.4 53 0.0012 35.4 10.2 28 309-336 320-347 (508)
50 KOG0148 Apoptosis-promoting RN 64.7 7 0.00015 40.0 3.6 41 187-233 60-100 (321)
51 KOG0146 RNA-binding protein ET 63.2 14 0.0003 37.7 5.3 51 310-372 57-112 (371)
52 KOG0117 Heterogeneous nuclear 61.4 15 0.00034 40.2 5.6 83 288-370 95-185 (506)
53 TIGR01659 sex-lethal sex-letha 60.0 11 0.00025 40.9 4.5 38 187-230 191-228 (346)
54 KOG0108 mRNA cleavage and poly 59.7 28 0.00061 38.9 7.5 35 190-230 19-53 (435)
55 smart00360 RRM RNA recognition 56.4 13 0.00029 28.5 3.3 24 311-334 36-59 (71)
56 smart00362 RRM_2 RNA recogniti 53.9 15 0.00033 28.3 3.3 25 311-335 37-61 (72)
57 smart00360 RRM RNA recognition 50.7 19 0.00041 27.6 3.4 32 194-231 1-32 (71)
58 TIGR01649 hnRNP-L_PTB hnRNP-L/ 48.9 22 0.00047 40.6 4.7 36 189-230 2-37 (481)
59 cd00590 RRM RRM (RNA recogniti 47.8 22 0.00049 27.5 3.4 25 312-336 39-63 (74)
60 COG0724 RNA-binding proteins ( 46.6 27 0.00058 35.3 4.7 36 189-230 115-150 (306)
61 KOG0123 Polyadenylate-binding 45.1 19 0.00041 39.5 3.3 36 192-233 79-114 (369)
62 PF14257 DUF4349: Domain of un 44.7 3.7E+02 0.0081 27.7 15.0 77 208-306 105-184 (262)
63 KOG0132 RNA polymerase II C-te 44.3 14 0.00031 43.1 2.2 39 186-230 418-456 (894)
64 PF14605 Nup35_RRM_2: Nup53/35 41.4 38 0.00083 25.8 3.5 32 190-228 2-33 (53)
65 KOG1457 RNA binding protein (c 38.8 42 0.00091 33.6 4.1 24 312-335 76-99 (284)
66 PF11608 Limkain-b1: Limkain b 34.7 74 0.0016 27.0 4.4 41 312-352 38-80 (90)
67 KOG3142 Prenylated rab accepto 34.5 46 0.001 32.6 3.7 90 544-643 52-142 (187)
68 KOG0107 Alternative splicing f 32.9 59 0.0013 31.4 4.0 40 188-233 9-48 (195)
69 KOG0144 RNA-binding protein CU 32.8 43 0.00093 36.7 3.5 27 311-337 74-100 (510)
70 TIGR01642 U2AF_lg U2 snRNP aux 31.8 64 0.0014 36.9 5.1 25 313-337 464-488 (509)
71 PF02654 CobS: Cobalamin-5-pho 31.8 5.7E+02 0.012 26.0 11.7 124 542-669 86-214 (235)
72 PF01102 Glycophorin_A: Glycop 31.7 39 0.00084 30.8 2.5 19 14-32 76-94 (122)
73 PF02388 FemAB: FemAB family; 31.7 3.9E+02 0.0085 29.7 11.1 83 218-322 227-315 (406)
74 PF11874 DUF3394: Domain of un 30.0 61 0.0013 31.8 3.7 59 622-680 8-66 (183)
75 KOG2150 CCR4-NOT transcription 29.9 1.4E+02 0.003 34.3 6.9 24 281-304 119-142 (575)
76 COG3833 MalG ABC-type maltose 29.1 6.9E+02 0.015 26.2 15.3 31 361-391 6-36 (282)
77 PF15176 LRR19-TM: Leucine-ric 28.5 1.9E+02 0.004 25.3 5.9 23 607-629 8-30 (102)
78 KOG0105 Alternative splicing f 27.5 58 0.0013 31.6 3.0 32 188-225 5-36 (241)
79 PF06570 DUF1129: Protein of u 27.5 5E+02 0.011 25.7 10.1 21 648-668 182-202 (206)
80 KOG0718 Molecular chaperone (D 26.6 3.9E+02 0.0084 30.1 9.4 33 568-600 372-404 (546)
81 PF11823 DUF3343: Protein of u 26.6 97 0.0021 25.2 3.9 36 314-352 2-37 (73)
82 PF14362 DUF4407: Domain of un 26.2 2.9E+02 0.0064 29.2 8.6 58 580-638 46-106 (301)
83 KOG0226 RNA-binding proteins [ 25.6 94 0.002 31.9 4.2 26 310-335 229-254 (290)
84 KOG4208 Nucleolar RNA-binding 24.9 70 0.0015 31.7 3.1 23 311-333 90-112 (214)
85 KOG4050 Glutamate transporter 24.9 3.3E+02 0.0071 26.0 7.3 42 344-385 32-74 (188)
86 PRK06231 F0F1 ATP synthase sub 24.4 1.5E+02 0.0031 29.7 5.5 36 147-182 51-86 (205)
87 PF09874 DUF2101: Predicted me 24.1 2E+02 0.0043 28.5 6.0 95 573-677 50-150 (206)
88 PF02439 Adeno_E3_CR2: Adenovi 23.1 1.8E+02 0.0039 20.7 4.0 30 3-32 5-34 (38)
89 PF03208 PRA1: PRA1 family pro 23.1 2.4E+02 0.0053 26.4 6.5 39 562-600 41-80 (153)
90 PRK11020 hypothetical protein; 22.5 3.4E+02 0.0074 24.3 6.5 48 232-305 5-52 (118)
91 KOG0114 Predicted RNA-binding 22.0 86 0.0019 27.7 2.7 25 311-335 55-79 (124)
92 KOG1855 Predicted RNA-binding 21.7 66 0.0014 35.3 2.5 38 187-230 229-266 (484)
93 PF06790 UPF0259: Uncharacteri 20.3 9.2E+02 0.02 24.9 10.4 80 451-530 71-152 (248)
94 PF10309 DUF2414: Protein of u 20.1 2.7E+02 0.0058 22.2 5.0 41 188-233 4-53 (62)
95 PLN03213 repressor of silencin 20.0 1.5E+02 0.0032 33.2 4.6 39 187-231 8-46 (759)
No 1
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=6.4e-121 Score=1007.78 Aligned_cols=662 Identities=27% Similarity=0.471 Sum_probs=610.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeccccccCCCCCCCCCCCCCCcccchHHhhcCCHHHHHHhhCchh
Q 004876 2 DFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFTWIKEAMSSSEQDVINMSGLDT 81 (726)
Q Consensus 2 ~~~~~~~~l~~~~~i~~~~~~~F~~lR~~~~~~~iY~pr~~~~~~~p~~~~~~~~~~~~Wi~~~~~~~~~~i~~~~GlDa 81 (726)
++++++|++.+++.++++++.+|++||+| ++++|+||+..++.+...+.+.+.|+|||+.++++++|+.+++.+|+||
T Consensus 20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~~~~P~~~~ss~~gWl~~L~~i~d~~~l~~aGlD~ 97 (827)
T COG5594 20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQNECLPEPNPSSYWGWLEPLVKIPDEFLLQYAGLDG 97 (827)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCCcccCCCCccchHHHHHHHHhCCHHHHHHHcCcch
Confidence 57899999999999999999999999988 6899999999877432222267899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCcccccCCCCCCCCCCCccccccccccCCCCCchHhHHHHHHHHHHHH
Q 004876 82 AVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVT 161 (726)
Q Consensus 82 ~~flrflr~~~~if~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~~~~l~~~s~~Ni~~~s~~lw~h~i~~~~~~~~~ 161 (726)
|+||||+|||++++++.|+++++||+|||++.++..++. ....++++++|++|+.+ ++++|+|++.+|++.+++
T Consensus 98 y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~gn-----~~s~s~l~~Ls~~Nv~~-~n~~~aHvf~~~~f~~~v 171 (827)
T COG5594 98 YFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATNGN-----SDSESGLDKLSISNVSP-SNRLYAHVFLSWFFFGYV 171 (827)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHEeeeeeecccccccCC-----ccchhhhhHhhhhcccC-CCceeeeeehhHHHHHHH
Confidence 999999999999999999999999999999885553221 02358999999999987 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC---------CCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCch
Q 004876 162 YFLLWRGYKHVSELRADALMSPE---------VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (726)
Q Consensus 162 ~~~l~~e~~~~~~~R~~~l~~~~---------~~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~ 232 (726)
+|.+++|++.+..+||++++++. .+.++|||+++++|.++++ +++|+++|+++.-+++.+..+|||.+
T Consensus 172 lfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~---~e~L~~~~~kl~~~~i~~~~l~~~~~ 248 (827)
T COG5594 172 LFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS---DEELKELFDKLKVGEIDSDVLCRDLG 248 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC---chhHHHHHhhcCeeeeccchhhhhhH
Confidence 99999999999999999998874 2348999999999999999 88899999999888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----------cc----------------CCCCCCCCCccccccc--CCCCcccc
Q 004876 233 EANKIYEELEGYKKKLARAEAVYAES----------KS----------------AGKPEGTRPTIKTGFL--GLLGKRVD 284 (726)
Q Consensus 233 ~l~~L~~~~~~~~~~Le~~~~~~~~~----------k~----------------~~~~~~~rP~~r~~~~--~~~g~kvd 284 (726)
.++++.++|++..+++|.+..++..+ |+ ...|+++||+||.+-. +++|||||
T Consensus 249 ~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVd 328 (827)
T COG5594 249 TLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVD 328 (827)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceec
Confidence 99999999999999999988765321 11 0235678999998755 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCCCCceE-eecCCCCCCeeeCCcCCchHH
Q 004876 285 AIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWT-VSDAPESRELIWNNLNIKFFQ 363 (726)
Q Consensus 285 ai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~-v~~AP~P~DIiW~NL~~~~~~ 363 (726)
+|||+++++.+++++|++.|+...+..++++|||||+|+..||+|+|....+++.... ++.||+|+||+|+|+..++++
T Consensus 329 aI~y~s~~l~~l~~~i~~~r~~~~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~~ 408 (827)
T COG5594 329 AIDYYSAKLTKLDAEIENARKSLYENTPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRKE 408 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHHH
Confidence 9999999999999999999998877777889999999999999999999888887665 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhcccchhhhcc-hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004876 364 RQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVINI-TALKTVLEAYLPQIALIVFLALLPKLLLFLS 442 (726)
Q Consensus 364 r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~l~~l~~~~p~l~~~~~~-~~~~~~i~~~lp~l~l~i~~~llp~ii~~ls 442 (726)
|..|++.++++.++++++|++|||+++.++|++++.+.+||++.+.+. |+++++++|+||+++++++++++|+++++|+
T Consensus 409 r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~ivP~fir~Ls 488 (827)
T COG5594 409 RLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWLS 488 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764 6899999999999999999999999999999
Q ss_pred HccCCcchhHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCchHHHHHHHHhCCCcchHHHHHHHHHHhhhhhh
Q 004876 443 KTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYGL 522 (726)
Q Consensus 443 ~~eg~~T~S~~~~s~~~k~f~f~~in~flv~~i~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~ 522 (726)
.+||..|+|+.|..++.|+|.|+|+|.|+|++++++..+.+.+..++|.+++.++++++|++|+||++|+++||+++.++
T Consensus 489 ~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~SnFfi~~iilqgl~~~~~ 568 (827)
T COG5594 489 YMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKASNFFISYIILQGLSGFPG 568 (827)
T ss_pred HhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcChHhHHHHHHhccHHHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCCHHHHH-HhcCCCCCCCcccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 004876 523 ELSRIVPLIIYHLKRKYLCKTEAELK-EAWFPGDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQA 601 (726)
Q Consensus 523 ~Ll~~~~l~~~~~~~~~~~~T~re~~-~~~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~l 601 (726)
+|+|+++|++..+++++.++|||++. +...++.|+||..||+.+.+++|+++||+++|+|+.||++||++.|++|||++
T Consensus 569 ~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~l 648 (827)
T COG5594 569 TLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYNL 648 (827)
T ss_pred HHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998999999999999984 55568999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cchhhHHHHHHHHHHHHHHHhhcccccccc
Q 004876 602 LKVYVPAYESYGRMWPHMFLRLVAALLLYQITMLGYFGSKKFI-YVGFLIPLPILSLIFVYICQKRFYKSFSDT 674 (726)
Q Consensus 602 lyvy~~~~esgG~~~~~~~~~~~~~l~i~q~~~~g~f~lk~~~-~~~~~~~l~~~t~~f~~~~~~~f~~~~~~~ 674 (726)
+|+++.++||||++||.|++|+++|+++||+||+|+|++.+++ .+.+++|++++|++||.+|+++|.|+..+.
T Consensus 649 ~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~~~i 722 (827)
T COG5594 649 IYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKYI 722 (827)
T ss_pred hhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhcccccce
Confidence 9999999999999999999999999999999999999998875 456999999999999999999999665443
No 2
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=3e-116 Score=1007.47 Aligned_cols=686 Identities=37% Similarity=0.650 Sum_probs=623.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeccccccCCCC--CCC--CCCCCCCc-ccchHHhhcCCHHHHHHhhCchh
Q 004876 7 LTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLD--PWE--GGSRTRNP-FTWIKEAMSSSEQDVINMSGLDT 81 (726)
Q Consensus 7 ~~~l~~~~~i~~~~~~~F~~lR~~~~~~~iY~pr~~~~~~~--p~~--~~~~~~~~-~~Wi~~~~~~~~~~i~~~~GlDa 81 (726)
..+-.++...+...+.+|.+++.++++.++|.|+..+.+.+ |.+ ....+++. ++|++++++.+|+|++++||+||
T Consensus 8 ~~~s~~~~~~~~~~~~~~~~l~l~~~~~~vy~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wl~~~~k~~~~ei~~~~GlDa 87 (728)
T KOG1134|consen 8 GISSTLNLNSAFAFLFLFLFLRLQPRNFRVYLPIWSLKGLRSSPIESKVEPVPSSVNFGWLPALLKIPDEEILEHAGLDA 87 (728)
T ss_pred cccccccchhhHHHHHHHHHHHhhhcceEEEEeeeeeccccCcCccccCCCCCCcccccchHHHhcCCHHHHHHHhcchH
Confidence 33344455555566677888888888999999988876532 111 11345566 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCcccccCCCCCCCCCCCccccccccccCCCCCchHhHHHHHHHHHHHH
Q 004876 82 AVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVT 161 (726)
Q Consensus 82 ~~flrflr~~~~if~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~~~~l~~~s~~Ni~~~s~~lw~h~i~~~~~~~~~ 161 (726)
++||||+++++++|+++++++++|++|||+++++..+. ..++++++|++|++.+++++|+|++++|++++++
T Consensus 88 ~~~L~~~~~~~~lf~~~~~l~~~illPVn~~~~~~~~~--------~~~s~~~ls~snv~~~s~~lw~Hv~~~y~~~~~~ 159 (728)
T KOG1134|consen 88 YVFLRFLKLGIKLFAVLSLLSVPILLPVNWTNGNLELG--------NEDSLDKLSISNVQPGSSLLWAHVFFTYLFTFFT 159 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheEEeeEEEecCccccc--------ccchhhhhhheeccCCCCCEEEEeehhHHHHHHH
Confidence 99999999999999999999999999999999988632 1127999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHH
Q 004876 162 YFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEEL 241 (726)
Q Consensus 162 ~~~l~~e~~~~~~~R~~~l~~~~~~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~ 241 (726)
++++++|+++++.+||++++++...+.+.|+.++|+|. ..+.+..+..+++|+..+|+++.++.+++|..++.++.+++
T Consensus 160 ~~~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 238 (728)
T KOG1134|consen 160 LFILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPP-PDGVSVSVIVRHFFSLNHPVKVRSHQVVYNESKLSKLLSKL 238 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccC-CCCCchhhHHhhhhhccCCceeehhHHHhhHHHHHHHHHHH
Confidence 99999999999999999999998889999999999993 33345577778888888889999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHhhhccCCCCCCCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEe
Q 004876 242 EGYK-KKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFF 320 (726)
Q Consensus 242 ~~~~-~~Le~~~~~~~~~k~~~~~~~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF 320 (726)
++.. +++.+...+.. ..+ ++||++|.|+||++|+||||||||++++++++++|+++|+...++++.+.|||||
T Consensus 239 ~k~~~~~l~~~~~~~~-----~~~-~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~~~~~~aFVtf 312 (728)
T KOG1134|consen 239 KKLRENKLYKEHKRLK-----SNP-KKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEEKPLPAAFVTF 312 (728)
T ss_pred HHHhHHHHHHhhhhhc-----ccc-ccCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 9984 33333222211 112 2899999999999999999999999999999999999999987778899999999
Q ss_pred cCHHHHHHHHhhhccCCCCceEeecCCCCCCeeeCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHhh
Q 004876 321 TSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKK 400 (726)
Q Consensus 321 ~s~~~a~~a~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~l~~l~~ 400 (726)
+|+.+|+.|+|..++.++..|.++.||||+||.|+|+..+..+|+.|+++++++++++++||++|+++|++++|+++|++
T Consensus 313 ~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl~~l~~ 392 (728)
T KOG1134|consen 313 KSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNLEGLSK 392 (728)
T ss_pred EeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHhHHHHHHHHHHHHHHhhhhhHH
Q 004876 401 ILPFLKPVINITALKTVLEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLF 480 (726)
Q Consensus 401 ~~p~l~~~~~~~~~~~~i~~~lp~l~l~i~~~llp~ii~~ls~~eg~~T~S~~~~s~~~k~f~f~~in~flv~~i~~~~~ 480 (726)
.+||++.+.+.++++++++|+||++++.++++++|.++++++++|||.|+|+.|++.+.|+|+|+++|+|++++++++.+
T Consensus 393 ~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa~ 472 (728)
T KOG1134|consen 393 VFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSAL 472 (728)
T ss_pred ccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCchHHHHHHHHhCCCcchHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcCCCHHHHHHhcCC-CCCCCc
Q 004876 481 KTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELKEAWFP-GDLGYG 559 (726)
Q Consensus 481 ~~l~~~~~~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~T~re~~~~~~~-~~f~~~ 559 (726)
+.+..++++|.+++..+|.++|++++||++|++++|++|.+++++|+.|++++.+++.+..+|||++++.+++ +.+++|
T Consensus 473 ~~~~~~l~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~~~g 552 (728)
T KOG1134|consen 473 RQLLSILSTPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSFYFG 552 (728)
T ss_pred HHHHHHhcCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCccccchh
Confidence 9999999889999999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 004876 560 TRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQITMLGYFG 639 (726)
Q Consensus 560 ~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~~~~g~f~ 639 (726)
..||..+++++|+++||+++|+|+|||++||++.|+|||||++|||.++|||||++||.+++++++|+++||++|+|+|+
T Consensus 553 ~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~ih~~ii~~l~l~ql~l~gl~~ 632 (728)
T KOG1134|consen 553 TIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDIHRRIIFGLILFQLILFGLFS 632 (728)
T ss_pred hhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc-chhhHHHHHHHHHHHHHHHhhccccccccchHHHhhhcccC----CC----cchhhcccCCCCCCCCCCC
Q 004876 640 SKKFIY-VGFLIPLPILSLIFVYICQKRFYKSFSDTALEVASRELKET----PS----MEHIFRSYIPLSLNSEKVD 707 (726)
Q Consensus 640 lk~~~~-~~~~~~l~~~t~~f~~~~~~~f~~~~~~~pl~~~~~~d~~~----~~----~~~~~~~Y~~p~l~~~~~~ 707 (726)
+|+.+. +.+++|++++|+++|.+|+.+|.|.+.++|++.+..+|..+ ++ .+...++|.||++.+.+++
T Consensus 633 ~k~~~~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 709 (728)
T KOG1134|consen 633 LKKGAVASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYNYLKSAYVLPVFLSGSDS 709 (728)
T ss_pred hccccccchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCChhhccccccccccCccccccccc
Confidence 999854 45999999999999999999999999999999998776432 22 2458999999999988744
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=2.3e-66 Score=558.76 Aligned_cols=323 Identities=42% Similarity=0.742 Sum_probs=313.7
Q ss_pred EEEEecCHHHHHHHHhhhccCCCCceEeecCCCCCCeeeCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 004876 316 ALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTL 395 (726)
Q Consensus 316 AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~l 395 (726)
|||||+++++|+.|+|..++++|++|++++||||+||+|+||+.+..+|..|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcccchhhh-cchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHhHHHHHHHHHHHHHHh
Q 004876 396 DNLKKILPFLKPVI-NITALKTVLEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVT 474 (726)
Q Consensus 396 ~~l~~~~p~l~~~~-~~~~~~~~i~~~lp~l~l~i~~~llp~ii~~ls~~eg~~T~S~~~~s~~~k~f~f~~in~flv~~ 474 (726)
+++++..|+++++. .++...++++|++|+++++++|.++|.++++++++|||.|+|+.|+++++|+|+||++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999885 45677899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhcCchHHHHHHHHhCCCcchHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcCCCHHHHHHhc-CC
Q 004876 475 VGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELKEAW-FP 553 (726)
Q Consensus 475 i~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~T~re~~~~~-~~ 553 (726)
+++++++.+.++.++|+++.+.+|.++|++++||++|++++++.+.+++|+|+++++++.+++++..+||||+++.+ ++
T Consensus 161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~ 240 (325)
T PF02714_consen 161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP 240 (325)
T ss_pred hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999988888877779999999988 99
Q ss_pred CCCCCcccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCcCCCcccHHHHHHHHHHHHHHHHHH
Q 004876 554 GDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQIT 633 (726)
Q Consensus 554 ~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~~ 633 (726)
++|+||..||+.+++++|+++||+++|+++|+|++||++.|++||||++|||++++||||++||.+++++++|++++|++
T Consensus 241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~ 320 (325)
T PF02714_consen 241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFT 320 (325)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 004876 634 MLGYF 638 (726)
Q Consensus 634 ~~g~f 638 (726)
|+|+|
T Consensus 321 ~~g~f 325 (325)
T PF02714_consen 321 MIGLF 325 (325)
T ss_pred HHHhC
Confidence 99986
No 4
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=100.00 E-value=4.2e-34 Score=273.90 Aligned_cols=156 Identities=35% Similarity=0.619 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeccccccCC-CCCCCCCCCCCCcccchHHhhcCCHHHHHHhhCchhHH
Q 004876 5 SFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKG-LDPWEGGSRTRNPFTWIKEAMSSSEQDVINMSGLDTAV 83 (726)
Q Consensus 5 ~~~~~l~~~~~i~~~~~~~F~~lR~~~~~~~iY~pr~~~~~-~~p~~~~~~~~~~~~Wi~~~~~~~~~~i~~~~GlDa~~ 83 (726)
||++++++|++++++++++|+++|+| ++++|+||.+.++ .++..++++++|+|+|++++++++|+|++++||+||++
T Consensus 1 s~~~sl~~~~~i~~~~~~~F~~lR~~--~~~iY~pR~~~~~~~~~~~~~~~~~g~f~Wi~~~~~~~d~~i~~~~GlDa~~ 78 (157)
T PF13967_consen 1 SFLTSLAINLIIFLVLLLLFCILRKR--FPRIYQPRSYLPHPEPERPPPLPSRGFFGWIKPVFKISDDEILRHCGLDAYV 78 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--cHHhcccccccCCcccccCCCCCCCCchHHHHHHHcCCHHHHHHHcCCCHHH
Confidence 68999999999999999999999988 6899999998852 11111124568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeeeecCcccccCCCCCCCCCCCccccccccccCCCCCchHhHHHHHHHHHHHHHH
Q 004876 84 YFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYF 163 (726)
Q Consensus 84 flrflr~~~~if~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~~~~l~~~s~~Ni~~~s~~lw~h~i~~~~~~~~~~~ 163 (726)
|+||+||++++|+++++++++||+|+|++|++..+.. ...++++++|++|++++++++|+|++++|++++++++
T Consensus 79 flrflr~~~~~f~~~~i~~~~vLlPi~~~~~~~~~~~------~~~~~l~~~tisnv~~~s~~lw~h~v~~~i~~~~~~~ 152 (157)
T PF13967_consen 79 FLRFLRMLIKIFLFLSILSLPVLLPINYTGGDDDGDS------DNESGLDRLTISNVPKGSSRLWAHVVFAYIFTFYVLY 152 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeEEeCCCCcccc------ccccccccccHHhhcCCCCeehHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998875211 1127999999999999999999999999999999999
Q ss_pred HHHHH
Q 004876 164 LLWRG 168 (726)
Q Consensus 164 ~l~~e 168 (726)
++++|
T Consensus 153 ~l~~E 157 (157)
T PF13967_consen 153 LLWRE 157 (157)
T ss_pred hheeC
Confidence 99976
No 5
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=99.07 E-value=2.7e-10 Score=97.42 Aligned_cols=71 Identities=41% Similarity=0.701 Sum_probs=58.3
Q ss_pred EecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCC----------CCCCCcccccccCCCC-ccccHHHHHHHH
Q 004876 227 VVTNNKEANKIYEELEGYKKKLARAEAVYAESKSA---GKP----------EGTRPTIKTGFLGLLG-KRVDAIEYYNEK 292 (726)
Q Consensus 227 i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~---~~~----------~~~rP~~r~~~~~~~g-~kvdai~~~~~~ 292 (726)
+|||+++|++|+++|++++++||.++++|.+..+. ..| ...||.++.|++|++| ++||||+||++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 58999999999999999999999999998754320 001 1346677779999998 999999999999
Q ss_pred HHHHH
Q 004876 293 IKEII 297 (726)
Q Consensus 293 l~~l~ 297 (726)
+++|+
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 99875
No 6
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.04 E-value=1e-07 Score=107.59 Aligned_cols=262 Identities=16% Similarity=0.184 Sum_probs=157.6
Q ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhcccchhhhc---chhHHHHHHhhhHHHHHHHHHH
Q 004876 356 NLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVIN---ITALKTVLEAYLPQIALIVFLA 432 (726)
Q Consensus 356 NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~l~~l~~~~p~l~~~~~---~~~~~~~i~~~lp~l~l~i~~~ 432 (726)
+...+.++|..|..++..++++++... ++++.++..++.. +....+ .....+++.+++-++++.++|.
T Consensus 109 ~~~~p~~~r~~r~~~s~~ivl~~i~i~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~vl~~v~i~il~~ 179 (452)
T PF04547_consen 109 EPYYPPWKRILRYLVSVPIVLLFILIV---IGIVIGVFYLRIY------LTEIYSGPGKQFLASLIPTVLNAVVILILNF 179 (452)
T ss_pred ccCCcHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHH------HHHHhcccchhHHHHHHHHHHHHHHHHhhhh
Confidence 446677788888866665554433222 2222222222211 111111 1123344445555555666777
Q ss_pred HHHHHHHHHHHccCCcchhHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCchHHHHHHHHhCCCcchHHHHHH
Q 004876 433 LLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYV 512 (726)
Q Consensus 433 llp~ii~~ls~~eg~~T~S~~~~s~~~k~f~f~~in~flv~~i~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~ffi~yi 512 (726)
+...+...|.++|.|+|.|+.|.|...|.|.|+++|.+...... +.+....+.-=+| +.. .| +..+..++
T Consensus 180 iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~~~~~~~~~-~~~-~L-------~~ql~~~~ 249 (452)
T PF04547_consen 180 IYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYGVRQEECQP-CLS-RL-------RIQLFTIM 249 (452)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccccCC-CHH-HH-------HHHHHHHH
Confidence 77888899999999999999999999999999999998855443 2222110000011 111 11 22334444
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHh-hcCC---CH--------------HHHHHhcCCCCCCCc---ccchhHHHHHHH
Q 004876 513 ALQFFVGYGLELSRIVPLIIYHLKRK-YLCK---TE--------------AELKEAWFPGDLGYG---TRVPSDMLIVTI 571 (726)
Q Consensus 513 i~~~~~~~~~~Ll~~~~l~~~~~~~~-~~~~---T~--------------re~~~~~~~~~f~~~---~~y~~~l~~~~i 571 (726)
+++-+.+...+.. .|.+.+..+++ ...+ ++ .+.++-...++++-. ..|..+..-+..
T Consensus 250 ~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~~~g~~~dY~emviQFGy 327 (452)
T PF04547_consen 250 VTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYDPDGLFDDYLEMVIQFGY 327 (452)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCCcCCchHHHHHHHHHHHH
Confidence 5554555555543 45555444332 1111 10 000112244555543 889999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCc---CCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 004876 572 VFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAY---ESYGRMWPHMFLRLVAALLLYQITMLGYF 638 (726)
Q Consensus 572 ~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~---esgG~~~~~~~~~~~~~l~i~q~~~~g~f 638 (726)
...|++..|+...++++.-++-.-+|++.+++.+++|. .++=..|-.++.-+...-++....++++-
T Consensus 328 v~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN~~li~~~ 397 (452)
T PF04547_consen 328 VTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITNAALIAFT 397 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999997543 23334798888777666666555555443
No 7
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.0045 Score=69.30 Aligned_cols=237 Identities=19% Similarity=0.258 Sum_probs=134.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhcccchhhhcchhHHHHHHhhhHHHHHHHHHHHHHHH
Q 004876 358 NIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVINITALKTVLEAYLPQIALIVFLALLPKL 437 (726)
Q Consensus 358 ~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~l~~l~~~~p~l~~~~~~~~~~~~i~~~lp~l~l~i~~~llp~i 437 (726)
..+.+.|.+|+..+.+-++++++....++.+... +++. |.......| +. -+-.++|++++.++..++..+
T Consensus 260 ~yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f--~ie~------~~~s~~~~~-~~-sils~lP~iv~~~li~~~t~~ 329 (647)
T KOG2513|consen 260 YYPEWKRILRRYLVSVPVILLCLCILLSFMLYCF--QIEV------WVLSDYGGP-LI-SILSYLPTIVYAVLIPVLTRI 329 (647)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHH------HHHHHcCCc-hH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4466788899988888777766665555554443 2221 111122233 22 234578888888777766655
Q ss_pred HHH----HHHccCCcchhHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCchHHHHHHHHhCCCcchHHHHHHH
Q 004876 438 LLF----LSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVA 513 (726)
Q Consensus 438 i~~----ls~~eg~~T~S~~~~s~~~k~f~f~~in~flv~~i~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~ffi~yii 513 (726)
-++ |.++|.|.|+|..+++...|.+.|+|+|.++-....+-+. . |-..+-..++.-+- .+.++
T Consensus 330 Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l---~----d~~~Lk~~l~~~li------~sQ~l 396 (647)
T KOG2513|consen 330 YKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLL---R----DMELLKQQLATLLI------TSQSL 396 (647)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c----cHHHHHHHHHHHHH------HHHHH
Confidence 554 5589999999999999999999999999988544332221 1 11111111221110 00000
Q ss_pred HHHhhhhhhhhhhhHHHHHH---------HHHHh-hc---CCCHHHHH---------------Hhc--------CC--CC
Q 004876 514 LQFFVGYGLELSRIVPLIIY---------HLKRK-YL---CKTEAELK---------------EAW--------FP--GD 555 (726)
Q Consensus 514 ~~~~~~~~~~Ll~~~~l~~~---------~~~~~-~~---~~T~re~~---------------~~~--------~~--~~ 555 (726)
.+ .++... |.+.. .++.+ +. ..++.+.+ +.+ +. .+
T Consensus 397 ~~-----~~e~~~--p~f~~~~~r~~~~~~f~t~~~ae~~~s~~~~i~~~~~~~~~~s~~~~a~~~~~~~qa~~E~~~~~ 469 (647)
T KOG2513|consen 397 LN-----LMEIAL--PYFKIRTKRYENYIRFRTKSFAEELASAQAKIDGESPGFPAPSREPEAQLFPSLKQAELESGLAE 469 (647)
T ss_pred HH-----HHhhcc--hHHHHhhhhhhhhhhHHHHHHHHhhccchhhhcccccCCCCcccccchhhcccchhhhhcchhhh
Confidence 00 011100 00000 00000 00 00111111 000 11 11
Q ss_pred CC-CcccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCc----CCCcccHHHHHHHHHH
Q 004876 556 LG-YGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAY----ESYGRMWPHMFLRLVA 625 (726)
Q Consensus 556 f~-~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~----esgG~~~~~~~~~~~~ 625 (726)
+| --..|=.+.+-|-..+.||++.|+-..+|++--++.+=+|-+.+..+.++|. ++=|. |..++..+-+
T Consensus 470 ydgtf~Dylel~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG~-Wq~~l~~lSv 543 (647)
T KOG2513|consen 470 YDGTFDDYLELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIGA-WQNALELLSV 543 (647)
T ss_pred hcchhHHHHHHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhHH-HHHHHHHHHH
Confidence 22 2234556778888889999999999999999999999999999999998764 45554 7777765543
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=96.82 E-value=0.003 Score=68.42 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=34.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCc
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (726)
..+..+|.|.|||.+++ +++|+++|+++ +.|++|.++.|.
T Consensus 104 ~~~~~~LfVgnLp~~~t----e~~L~~lF~~~--G~V~~v~i~~d~ 143 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMT----DRELYALFRTI--GPINTCRIMRDY 143 (346)
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEecC
Confidence 35789999999999987 68999999987 569999998774
No 9
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.99 E-value=0.049 Score=51.38 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=30.3
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+|.|.|||.+.+ +++|+++|+++ |.|.++.++.
T Consensus 33 ~~~~lfVgnL~~~~t----e~~L~~~F~~~--G~I~~v~i~~ 68 (144)
T PLN03134 33 MSTKLFIGGLSWGTD----DASLRDAFAHF--GDVVDAKVIV 68 (144)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEEe
Confidence 467899999999986 79999999986 6788887764
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=95.85 E-value=0.033 Score=59.57 Aligned_cols=136 Identities=17% Similarity=0.300 Sum_probs=75.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHH------HHHHHHHHHHHHHHHHHHHhhhcc
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANK------IYEELEGYKKKLARAEAVYAESKS 260 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~------L~~~~~~~~~~Le~~~~~~~~~k~ 260 (726)
.+.--+.|-.||+... +.+|+++||++ |.|.+|.+.+|-..=.. ....|+++.+ +...+...|.
T Consensus 32 ~~~vKlfVgqIprt~s----E~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~----a~~Alhn~kt 101 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTAS----EKDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADE----AINALHNQKT 101 (510)
T ss_pred chhhhheeccCCcccc----HHHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHHH----HHHHhhcccc
Confidence 3344578889999876 78999999998 78999999887432110 0112222211 2222222121
Q ss_pred C-----------CCCCCCC-CcccccccCCCCccccHHHHHHHHHHHHHHH---HHHHHHh-hhcccCCceEEEEecCHH
Q 004876 261 A-----------GKPEGTR-PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPK---LEAEQKI-TLKEKQLGAALVFFTSRV 324 (726)
Q Consensus 261 ~-----------~~~~~~r-P~~r~~~~~~~g~kvdai~~~~~~l~~l~~~---I~~~~~~-~~~~~~~~~AFVtF~s~~ 324 (726)
- .+.+.+| +..+.-|.|+..|+.. +++++++-.+ |++.+-. .......|+|||+|.+.+
T Consensus 102 lpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~t-----e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke 176 (510)
T KOG0144|consen 102 LPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCT-----ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKE 176 (510)
T ss_pred cCCCCcceeecccchhhhccccchhhhhhhcccccc-----HHHHHHHHHhhCccchhhheecccccccceeEEEEehHH
Confidence 0 0011111 1122224454455543 3445555443 2322211 113457899999999999
Q ss_pred HHHHHHhhhccCC
Q 004876 325 AAASAAQSLHAQL 337 (726)
Q Consensus 325 ~a~~a~q~~~~~~ 337 (726)
.|..|...++...
T Consensus 177 ~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 177 MAVAAIKALNGTQ 189 (510)
T ss_pred HHHHHHHhhccce
Confidence 9999999887654
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=95.60 E-value=0.077 Score=57.76 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=73.4
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 004876 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 268 (726)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~r 268 (726)
..+|+|.|||.+++ +++|+++|+++ |.|.+|.+++|-.
T Consensus 3 ~~~l~V~nLp~~~~----e~~l~~~F~~~--G~i~~v~i~~d~~------------------------------------ 40 (352)
T TIGR01661 3 KTNLIVNYLPQTMT----QEEIRSLFTSI--GEIESCKLVRDKV------------------------------------ 40 (352)
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHcc--CCEEEEEEEEcCC------------------------------------
Confidence 56899999999987 79999999997 6898988876421
Q ss_pred CcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeecC
Q 004876 269 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (726)
Q Consensus 269 P~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 346 (726)
..+..|+|||+|.+.++|..|.+.+.... ...+.++.|
T Consensus 41 ----------------------------------------~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 41 ----------------------------------------TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred ----------------------------------------CCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 01244799999999999999998765542 334555544
Q ss_pred C------CCCCeeeCCcCCchHHHHHHHHHH
Q 004876 347 P------ESRELIWNNLNIKFFQRQIRQYVV 371 (726)
Q Consensus 347 P------~P~DIiW~NL~~~~~~r~~R~~~~ 371 (726)
- ....|.-.||..+..+..++.++.
T Consensus 81 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 81 RPSSDSIKGANLYVSGLPKTMTQHELESIFS 111 (352)
T ss_pred cccccccccceEEECCccccCCHHHHHHHHh
Confidence 2 233577788877766666666543
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.49 E-value=0.089 Score=53.86 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=29.6
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
.+||.|.|||.+.+ +++|++||+.+ |+|.++.+.
T Consensus 4 ~rtVfVgNLs~~tT----E~dLrefFS~~--G~I~~V~I~ 37 (260)
T PLN03120 4 VRTVKVSNVSLKAT----ERDIKEFFSFS--GDIEYVEMQ 37 (260)
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 58999999999876 79999999987 789888765
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=95.44 E-value=0.053 Score=43.44 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=25.9
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 192 VlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
|.|.|||.+.+ +++|+++|+++ |.+..+.+..
T Consensus 1 l~v~nlp~~~t----~~~l~~~f~~~--g~i~~~~~~~ 32 (70)
T PF00076_consen 1 LYVGNLPPDVT----EEELRDFFSQF--GKIESIKVMR 32 (70)
T ss_dssp EEEESETTTSS----HHHHHHHHHTT--STEEEEEEEE
T ss_pred cEEcCCCCcCC----HHHHHHHHHHh--hhcccccccc
Confidence 68999999987 69999999986 6677766554
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=95.17 E-value=0.058 Score=62.83 Aligned_cols=170 Identities=17% Similarity=0.199 Sum_probs=86.6
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHH------HHHHHHHHHHHHHHHHHHHhhhccCCC-
Q 004876 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANK------IYEELEGYKKKLARAEAVYAESKSAGK- 263 (726)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~------L~~~~~~~~~~Le~~~~~~~~~k~~~~- 263 (726)
||.|.|||.+++ ++.|+++|+++ |.|.+|.+++|...-.. -....+.+.+.++..-......+.-..
T Consensus 2 sl~VgnLp~~vt----e~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVT----EAKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 799999999987 79999999998 67999999987541100 012333444333332111000000000
Q ss_pred CCCCCCccc-ccccCC----CCccccHHHHHHHHHHHHHHH---HHHHHHhh-hcccCCceEEEEecCHHHHHHHHhhhc
Q 004876 264 PEGTRPTIK-TGFLGL----LGKRVDAIEYYNEKIKEIIPK---LEAEQKIT-LKEKQLGAALVFFTSRVAAASAAQSLH 334 (726)
Q Consensus 264 ~~~~rP~~r-~~~~~~----~g~kvdai~~~~~~l~~l~~~---I~~~~~~~-~~~~~~~~AFVtF~s~~~a~~a~q~~~ 334 (726)
....+|..+ .+...+ ..+.+|. +++.++-.+ |...+-.. ...+..|.|||.|.+.++|..|.+.+.
T Consensus 76 ~s~~~~~~~~~~~~~vfV~nLp~~~~~-----~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 76 WSQRDPSLRRSGVGNIFVKNLDKSVDN-----KALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred cccccccccccCCCceEEcCCCccCCH-----HHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhc
Confidence 000111111 110001 1122221 222222222 11110000 123457899999999999999998764
Q ss_pred cCC--CCceEee-----------cCCCCCCeeeCCcCCchHHHHHHHHHH
Q 004876 335 AQL--VDTWTVS-----------DAPESRELIWNNLNIKFFQRQIRQYVV 371 (726)
Q Consensus 335 ~~~--~~~~~v~-----------~AP~P~DIiW~NL~~~~~~r~~R~~~~ 371 (726)
... .....+. ..+....|.-.||..+..+..++..+.
T Consensus 151 g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~ 200 (562)
T TIGR01628 151 GMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA 200 (562)
T ss_pred ccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH
Confidence 321 1112211 223345588889988877777776554
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=94.96 E-value=0.062 Score=53.34 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=27.7
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
--|.|-|+|-+.+ ++.|++|||++ |+|++..++-
T Consensus 13 TKifVggL~w~T~----~~~l~~yFeqf--GeI~eavvit 46 (247)
T KOG0149|consen 13 TKIFVGGLAWETH----KETLRRYFEQF--GEIVEAVVIT 46 (247)
T ss_pred EEEEEcCcccccc----hHHHHHHHHHh--CceEEEEEEe
Confidence 3589999998877 69999999998 6777766664
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=94.37 E-value=0.15 Score=58.60 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=33.6
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCch
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~ 232 (726)
+..+|.|.|||.++. +++|++.|+++ |.|.++.+.+|..
T Consensus 57 ~~~~lFVgnLp~~~t----Ed~L~~~F~~~--G~I~~vrl~~D~s 95 (578)
T TIGR01648 57 RGCEVFVGKIPRDLY----EDELVPLFEKA--GPIYELRLMMDFS 95 (578)
T ss_pred CCCEEEeCCCCCCCC----HHHHHHHHHhh--CCEEEEEEEECCC
Confidence 468999999999986 79999999997 6899999888743
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=94.15 E-value=0.21 Score=54.30 Aligned_cols=36 Identities=8% Similarity=0.211 Sum_probs=30.1
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
.++|.|.|||.+.. ++.|+++|+.+ |.|.++.+++|
T Consensus 269 ~~~lfV~NL~~~~~----e~~L~~~F~~f--G~v~~v~i~~d 304 (352)
T TIGR01661 269 GYCIFVYNLSPDTD----ETVLWQLFGPF--GAVQNVKIIRD 304 (352)
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEeEc
Confidence 35799999998875 79999999987 67888888754
No 18
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=94.14 E-value=0.27 Score=42.85 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=21.3
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ 336 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~ 336 (726)
..|+|||.|.+.++|....+..+..
T Consensus 44 N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 44 NLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 5699999999999999988877543
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=93.77 E-value=0.19 Score=40.49 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=23.4
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 192 VlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
|+|+|||.+.. +++|.++|+.+ |.|.++.+.
T Consensus 1 v~i~nlp~~~~----~~~l~~~f~~~--g~v~~v~~~ 31 (70)
T PF14259_consen 1 VYISNLPPSTT----EEDLRNFFSRF--GPVEKVRLI 31 (70)
T ss_dssp EEEESSTTT------HHHHHHHCTTS--SBEEEEEEE
T ss_pred CEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEE
Confidence 68999999876 68899999886 557777655
No 20
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=93.64 E-value=0.24 Score=49.47 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=30.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
..-||.|+|+|++++ ++.|++.|..+ |.|.++.+++|
T Consensus 188 D~~tvRvtNLsed~~----E~dL~eLf~~f--g~i~rvylard 224 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMR----EDDLEELFRPF--GPITRVYLARD 224 (270)
T ss_pred ccceeEEecCccccC----hhHHHHHhhcc--CccceeEEEEc
Confidence 457999999999998 57888888776 66888888764
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=93.48 E-value=0.38 Score=50.05 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=67.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
..+-+.|+|||=..|| .+|+..|+++ |+|.+|.|+.|.+
T Consensus 95 ~pkRLhVSNIPFrFRd----pDL~aMF~kf--G~VldVEIIfNER----------------------------------- 133 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRD----PDLRAMFEKF--GKVLDVEIIFNER----------------------------------- 133 (376)
T ss_pred CCceeEeecCCccccC----ccHHHHHHhh--CceeeEEEEeccC-----------------------------------
Confidence 4577999999999995 7899999998 7899999886431
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeec
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (726)
...|-+||||++.++|..|.+.+|... ..+..|..
T Consensus 134 -------------------------------------------GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 134 -------------------------------------------GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred -------------------------------------------CCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 123789999999999999999988753 22222222
Q ss_pred ----------CCCCCCeeeCCcCCch
Q 004876 346 ----------APESRELIWNNLNIKF 361 (726)
Q Consensus 346 ----------AP~P~DIiW~NL~~~~ 361 (726)
-|-|.-.-|+++....
T Consensus 171 ATarV~n~K~~v~p~~~g~~~~~a~~ 196 (376)
T KOG0125|consen 171 ATARVHNKKKKVLPYPNGWKLLPAVG 196 (376)
T ss_pred cchhhccCCcccCCCccccccccchh
Confidence 3556666788876643
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=92.20 E-value=0.28 Score=49.66 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=67.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
.-||+.|-|+..+++ ++-|...|.++ |.|.++.+++|. +....+- .. ...+
T Consensus 5 ~prtlyvgnld~~vt----e~~i~~lf~qi--g~v~~~k~i~~e----------------~~v~wa~---~p----~nQs 55 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVT----EDFIATLFNQI--GSVTKTKVIFDE----------------LKVNWAT---AP----GNQS 55 (321)
T ss_pred CCceEEeeccChhhH----HHHHHHHHHhc--cccccceeehhh----------------hcccccc---Cc----ccCC
Confidence 469999999998887 57888889888 678888888871 1110000 00 1123
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHH---HHHHHH--HhhhcccCCceEEEEecCHHHHHHHHhhh
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIP---KLEAEQ--KITLKEKQLGAALVFFTSRVAAASAAQSL 333 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~---~I~~~~--~~~~~~~~~~~AFVtF~s~~~a~~a~q~~ 333 (726)
+|+.+..+.-+.|.-+..|++ ++|++.-. +|.+.| ++....|..|++||+|-+.++|..|.|..
T Consensus 56 k~t~~~hfhvfvgdls~eI~~--e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDN--EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred CCccccceeEEehhcchhcch--HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 444443322223433333433 22332222 222222 11123467899999999999999998865
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=91.92 E-value=1.1 Score=52.10 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=31.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCc
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (726)
....+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 176 ~~~~~l~V~nl~~~~t----ee~L~~~F~~f--G~i~~~~i~~~~ 214 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVN----EDKLRELFAKF--GEITSAAVMKDG 214 (562)
T ss_pred cCCCeEEEeCCCCcCC----HHHHHHHHHhc--CCEEEEEEEECC
Confidence 3456899999999886 68999999987 678888877653
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=91.34 E-value=0.9 Score=52.47 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=30.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCCCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 350 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 350 (726)
..+.|||.|++.++|..|.+.+... ....++|..|..++
T Consensus 268 ~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 268 IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 4679999999999999999877654 34567788775543
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=90.54 E-value=1.3 Score=51.47 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=63.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
..++|.|.|||.++. +++|+++|+.+ |.|.++.+.+|-.
T Consensus 203 ~~~rLfVgnLp~~vt----eedLk~lFs~F--G~I~svrl~~D~~----------------------------------- 241 (612)
T TIGR01645 203 KFNRIYVASVHPDLS----ETDIKSVFEAF--GEIVKCQLARAPT----------------------------------- 241 (612)
T ss_pred ccceEEeecCCCCCC----HHHHHHHHhhc--CCeeEEEEEecCC-----------------------------------
Confidence 347999999999987 68899999986 6788877654221
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEeec
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 345 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 345 (726)
..+..|+|||.|++.++|..|.+.+... ....++|..
T Consensus 242 -----------------------------------------tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 242 -----------------------------------------GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred -----------------------------------------CCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 1134589999999999999999887654 344567777
Q ss_pred CCCCCCeeeC
Q 004876 346 APESRELIWN 355 (726)
Q Consensus 346 AP~P~DIiW~ 355 (726)
|..|-|=.|.
T Consensus 281 Ai~pP~~~~~ 290 (612)
T TIGR01645 281 CVTPPDALLQ 290 (612)
T ss_pred cCCCccccCC
Confidence 7666555564
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=90.23 E-value=1.2 Score=44.94 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=79.6
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHH---------HHHHHHHHHHHHHHHHHHhhhccC
Q 004876 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKI---------YEELEGYKKKLARAEAVYAESKSA 261 (726)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L---------~~~~~~~~~~Le~~~~~~~~~k~~ 261 (726)
-+.|.-+|..++ +++++..|..+ |+++++.++||--.=+.| .++.+++...|.....+ +|.-
T Consensus 43 NLIvNYLPQ~MT----qdE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~KTI 113 (360)
T KOG0145|consen 43 NLIVNYLPQNMT----QDELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NKTI 113 (360)
T ss_pred eeeeeecccccC----HHHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec---cceE
Confidence 455666999987 68999999887 789999999985322221 13344444444433211 1100
Q ss_pred CCCCCCCCcc---cccccCCCC-ccccHHHHHHHHHHHHHHHHHHHH-Hhhh----cccCCceEEEEecCHHHHHHHHhh
Q 004876 262 GKPEGTRPTI---KTGFLGLLG-KRVDAIEYYNEKIKEIIPKLEAEQ-KITL----KEKQLGAALVFFTSRVAAASAAQS 332 (726)
Q Consensus 262 ~~~~~~rP~~---r~~~~~~~g-~kvdai~~~~~~l~~l~~~I~~~~-~~~~----~~~~~~~AFVtF~s~~~a~~a~q~ 332 (726)
+-.--||.. |-.-+=..| .|. --++|++.+-...-+.- .++. ..-..|.+||.|+...+|..|...
T Consensus 114 -KVSyARPSs~~Ik~aNLYvSGlPkt----MtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 114 -KVSYARPSSDSIKDANLYVSGLPKT----MTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred -EEEeccCChhhhcccceEEecCCcc----chHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 001123321 100000011 111 12345555544333221 1111 234578999999999999999999
Q ss_pred hccCCCCc----eEeecCCCC
Q 004876 333 LHAQLVDT----WTVSDAPES 349 (726)
Q Consensus 333 ~~~~~~~~----~~v~~AP~P 349 (726)
+...+|.. ..|+-|-.|
T Consensus 189 lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCc
Confidence 98887754 356666666
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=90.06 E-value=2.1 Score=48.37 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=30.5
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
..+||.|.|||.+++ +++|+++|+++ |.|.+|.+..
T Consensus 88 ~~~~l~V~nlp~~~~----~~~l~~~F~~~--G~v~~v~i~~ 123 (457)
T TIGR01622 88 DDRTVFVLQLALKAR----ERDLYEFFSKV--GKVRDVQCIK 123 (457)
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEee
Confidence 478999999999886 68899999987 5788887764
No 28
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=89.27 E-value=1.4 Score=48.96 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=28.4
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
+||+|+|+|-+.+ ++.|.++|+++ |.|..+.+|
T Consensus 293 ~tVFvRNL~fD~t----EEel~~~fskF--G~v~ya~iV 325 (678)
T KOG0127|consen 293 KTVFVRNLPFDTT----EEELKEHFSKF--GEVKYAIIV 325 (678)
T ss_pred ceEEEecCCcccc----HHHHHHHHHhh--ccceeEEEE
Confidence 8999999999887 79999999998 677766665
No 29
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=89.00 E-value=0.56 Score=51.48 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=30.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...+-|.++++|-+.+ .++|.+||+.+ .|+++.+.++
T Consensus 8 ~~~~~vr~rGLPwsat----~~ei~~Ff~~~---~I~~~~~~r~ 44 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSAT----EKEILDFFSNC---GIENLEIPRR 44 (510)
T ss_pred CcceEEEecCCCcccc----HHHHHHHHhcC---ceeEEEEecc
Confidence 4678899999999887 68899999875 5777777665
No 30
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=88.79 E-value=1.4 Score=43.72 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=33.5
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccCC--CCceEeecCCCCCCeeeC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWN 355 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~ 355 (726)
+..|.|||+|++..+|..|...++.-. ..-+++..|-+++||+=+
T Consensus 50 KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 50 KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 456899999999999888887665432 335667788888887755
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=87.16 E-value=4.3 Score=44.28 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=30.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
+.-.-|.|-.||.|+. +++|.-.|++. |+|-++.+..|
T Consensus 81 ~~G~EVfvGkIPrD~~----EdeLvplfEki--G~I~elRLMmD 118 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVF----EDELVPLFEKI--GKIYELRLMMD 118 (506)
T ss_pred CCCceEEecCCCcccc----chhhHHHHHhc--cceeeEEEeec
Confidence 3456899999999987 68899999997 66766666555
No 32
>PLN03121 nucleic acid binding protein; Provisional
Probab=86.92 E-value=0.99 Score=45.68 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=32.5
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
.-|||.|+||+.+.+ +++|++||+.. |+|.+|.+.+|
T Consensus 4 ~g~TV~V~NLS~~tT----E~dLrefFS~~--G~I~~V~I~~D 40 (243)
T PLN03121 4 GGYTAEVTNLSPKAT----EKDVYDFFSHC--GAIEHVEIIRS 40 (243)
T ss_pred CceEEEEecCCCCCC----HHHHHHHHHhc--CCeEEEEEecC
Confidence 469999999999887 79999999986 89999998854
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=86.81 E-value=2.8 Score=48.09 Aligned_cols=36 Identities=8% Similarity=0.217 Sum_probs=29.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
+.++|.|.|||.++. +++|+++|+++ |.|..+.++.
T Consensus 294 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~~~~~~ 329 (509)
T TIGR01642 294 SKDRIYIGNLPLYLG----EDQIKELLESF--GDLKAFNLIK 329 (509)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEe
Confidence 357999999999886 68999999987 5677776653
No 34
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=86.14 E-value=3.2 Score=44.92 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=26.8
Q ss_pred CCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEE
Q 004876 185 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (726)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (726)
.+..+|+|.|||||-+.+- +.|++.+++.. |+|+-|.
T Consensus 40 ~~~r~R~vfItNIpyd~rW----qdLKdLvrekv-Gev~yve 76 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRW----QDLKDLVREKV-GEVEYVE 76 (608)
T ss_pred cccccceEEEecCcchhhh----HhHHHHHHHhc-CceEeee
Confidence 3456889999999999985 77888877653 4454443
No 35
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.84 E-value=7 Score=46.12 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHhHHHHHHHHHHHH
Q 004876 421 YLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFI 471 (726)
Q Consensus 421 ~lp~l~l~i~~~llp~ii~~ls~~eg~~T~S~~~~s~~~k~f~f~~in~fl 471 (726)
.+-.+++.++|.+---+..+++..|.+.|.|+.|.|+.-|.|+||++|...
T Consensus 438 ~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~ys 488 (861)
T KOG2514|consen 438 IINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYYS 488 (861)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhcC
Confidence 334445556666777778889999999999999999999999999999754
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=85.65 E-value=3.6 Score=46.46 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=29.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
+..+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 184 p~~~~l~v~nl~~~~t----e~~l~~~f~~~--G~i~~v~~~~ 220 (457)
T TIGR01622 184 PNFLKLYVGNLHFNIT----EQELRQIFEPF--GDIEDVQLHR 220 (457)
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 4578999999999886 68999999876 5677766553
No 37
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=85.43 E-value=7.3 Score=44.47 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=30.7
Q ss_pred CccceEEEecCCCC-CCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~-~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
+...+|+|.|||.+ ++ ++.|++.|+++ |.|.++.+.+|
T Consensus 273 ~~~~~l~v~nL~~~~vt----~~~L~~lF~~y--G~V~~vki~~~ 311 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVN----CDRLFNLFCVY--GNVERVKFMKN 311 (481)
T ss_pred CCCCEEEEeCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeC
Confidence 35679999999974 54 78999999987 78888877654
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=85.09 E-value=2.5 Score=49.10 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=30.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
..++|.|.|||.+.+ ++.|+++|+++ |.|.++.+.+|
T Consensus 106 ~~~rLfVGnLp~~~t----Ee~Lr~lF~~f--G~I~sV~I~~D 142 (612)
T TIGR01645 106 IMCRVYVGSISFELR----EDTIRRAFDPF--GPIKSINMSWD 142 (612)
T ss_pred CCCEEEEcCCCCCCC----HHHHHHHHHcc--CCEEEEEEeec
Confidence 457999999999887 68999999987 67888877653
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=84.88 E-value=0.8 Score=47.00 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=31.0
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchH
Q 004876 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKE 233 (726)
Q Consensus 192 VlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~ 233 (726)
+.|-|+|.+.. .++|+..|+++ |+|.++.|+.|.+=
T Consensus 5 LFIGNLp~~~~----~~elr~lFe~y--gkVlECDIvKNYgF 40 (346)
T KOG0109|consen 5 LFIGNLPREAT----EQELRSLFEQY--GKVLECDIVKNYGF 40 (346)
T ss_pred hhccCCCcccc----hHHHHHHHHhh--CceEeeeeecccce
Confidence 56889998876 68999999998 89999999998763
No 40
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=81.11 E-value=2.5 Score=32.37 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.4
Q ss_pred CceEEEEecCHHHHHHHHhhhccC
Q 004876 313 LGAALVFFTSRVAAASAAQSLHAQ 336 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~ 336 (726)
.+.|||+|.+.++|..|.+.++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 599999999999999999987654
No 41
>smart00362 RRM_2 RNA recognition motif.
Probab=80.05 E-value=2.8 Score=32.68 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=26.8
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
||.|+|+|.+.. +++|+++|+++ |.+.++.+.++
T Consensus 1 ~v~i~~l~~~~~----~~~l~~~~~~~--g~v~~~~~~~~ 34 (72)
T smart00362 1 TLFVGNLPPDVT----EEDLKELFSKF--GPIESVKIPKD 34 (72)
T ss_pred CEEEcCCCCcCC----HHHHHHHHHhc--CCEEEEEEecC
Confidence 689999999876 68999999987 56777666543
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=78.91 E-value=6.2 Score=41.72 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhh--------cccCCceEEEEecCHHHHHHHHhhhccC
Q 004876 292 KIKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ 336 (726)
Q Consensus 292 ~l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 336 (726)
-+.++++.+.++.++.. ..++-|.|=|+|++...|..|.|.++..
T Consensus 285 l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 285 LLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 36778888888777653 3467899999999999999999998754
No 43
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=76.60 E-value=18 Score=32.34 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=42.2
Q ss_pred cCCCCCCCccc-----chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCc
Q 004876 551 WFPGDLGYGTR-----VPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAY 609 (726)
Q Consensus 551 ~~~~~f~~~~~-----y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~ 609 (726)
...++|+.+.. |+| .+..+|+.|||+.|+ ++.+-+++.+++.|+.+++.++|+.
T Consensus 47 ~g~~eF~i~~nvL~liY~Q--tl~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~~ 105 (111)
T PF07810_consen 47 PGKPEFDIPKNVLDLIYNQ--TLVWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPPQ 105 (111)
T ss_pred CCCCCccHhhhHHHHHHcc--hhhhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34578887665 444 467889999888887 5677788899999999999998864
No 44
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=72.38 E-value=12 Score=38.80 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=31.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
.-+|++|..|+-+.. +.+|++.|+.+ |.|.++.+|+|
T Consensus 100 Py~TLFv~RLnydT~----EskLrreF~~Y--G~IkrirlV~d 136 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTS----ESKLRREFEKY--GPIKRIRLVRD 136 (335)
T ss_pred ccceeeeeecccccc----HHHHHHHHHhc--CcceeEEEeee
Confidence 347999999998875 78999999998 67888888864
No 45
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=72.15 E-value=3.4 Score=39.57 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=32.3
Q ss_pred HHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeec
Q 004876 303 EQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (726)
Q Consensus 303 ~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (726)
++.......+-+.|||.|++..+|.-|...+..++ ..+++|++
T Consensus 37 lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 37 LRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred ceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 33333344688999999999999999999887766 44577665
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=71.68 E-value=6.8 Score=30.62 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=26.8
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
+|.|+|+|.+.. +++++++|+.. |.+.++.+..
T Consensus 1 ~i~i~~l~~~~~----~~~i~~~~~~~--g~i~~~~~~~ 33 (74)
T cd00590 1 TLFVGNLPPDVT----EEDLRELFSKF--GKVESVRIVR 33 (74)
T ss_pred CEEEeCCCCccC----HHHHHHHHHhc--CCEEEEEEee
Confidence 588999999876 68999999987 6677776654
No 47
>smart00361 RRM_1 RNA recognition motif.
Probab=71.09 E-value=5.1 Score=32.38 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.3
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~ 336 (726)
...|.|||+|++..+|..|.+.++..
T Consensus 35 ~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 35 HKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999999999999987664
No 48
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=65.68 E-value=1 Score=38.38 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.8
Q ss_pred CCccceEEEecCCCCCCC
Q 004876 186 RPQQFAVLVRDLPDLPKG 203 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~ 203 (726)
..+.+||+|+|||..+..
T Consensus 49 ~vs~rtVlvsgip~~l~e 66 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDE 66 (88)
T ss_pred cccCCEEEEeCCCCCCCh
Confidence 468899999999996653
No 49
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=65.40 E-value=53 Score=35.40 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=23.6
Q ss_pred cccCCceEEEEecCHHHHHHHHhhhccC
Q 004876 309 KEKQLGAALVFFTSRVAAASAAQSLHAQ 336 (726)
Q Consensus 309 ~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 336 (726)
+..++|-|||.|++.++|..|+|..+.+
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 3568999999999999999999976543
No 50
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=64.73 E-value=7 Score=40.00 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=34.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchH
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKE 233 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~ 233 (726)
-+++-|.|.++.++..+ +.|++-|..+ |+|.+..+++|...
T Consensus 60 ~~hfhvfvgdls~eI~~----e~lr~aF~pF--GevS~akvirD~~T 100 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDN----EKLREAFAPF--GEVSDAKVIRDMNT 100 (321)
T ss_pred ccceeEEehhcchhcch----HHHHHHhccc--cccccceEeecccC
Confidence 34678999999998874 8899998876 78999999998753
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=63.20 E-value=14 Score=37.72 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=39.9
Q ss_pred ccCCceEEEEecCHHHHHHHHhhhccCCC-----CceEeecCCCCCCeeeCCcCCchHHHHHHHHHHH
Q 004876 310 EKQLGAALVFFTSRVAAASAAQSLHAQLV-----DTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVY 372 (726)
Q Consensus 310 ~~~~~~AFVtF~s~~~a~~a~q~~~~~~~-----~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~ 372 (726)
....|+|||-|++..+|+.|...+|.++. ..+.|+.| .+.++|..||.--.
T Consensus 57 g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A------------DTdkER~lRRMQQm 112 (371)
T KOG0146|consen 57 GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA------------DTDKERTLRRMQQM 112 (371)
T ss_pred CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec------------cchHHHHHHHHHHH
Confidence 35689999999999999999999998753 35566665 35688888887543
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=61.38 E-value=15 Score=40.16 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHH---HHH--hhhcccCCceEEEEecCHHHHHHHHhhhccC---CCCceEeecCCCCCCeeeCCcCC
Q 004876 288 YYNEKIKEIIPKLEA---EQK--ITLKEKQLGAALVFFTSRVAAASAAQSLHAQ---LVDTWTVSDAPESRELIWNNLNI 359 (726)
Q Consensus 288 ~~~~~l~~l~~~I~~---~~~--~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~---~~~~~~v~~AP~P~DIiW~NL~~ 359 (726)
-++++|.-+-++|-+ .|- +.......|+|||||.+...|+.|...+.+. ....+.+...-.-.-..=.|+-.
T Consensus 95 ~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK 174 (506)
T KOG0117|consen 95 VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPK 174 (506)
T ss_pred ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCc
Confidence 356777777666554 221 1124467899999999999999999998765 22334455544456666677777
Q ss_pred chHHHHHHHHH
Q 004876 360 KFFQRQIRQYV 370 (726)
Q Consensus 360 ~~~~r~~R~~~ 370 (726)
++.+--++.-+
T Consensus 175 ~k~keeIlee~ 185 (506)
T KOG0117|consen 175 TKKKEEILEEM 185 (506)
T ss_pred cccHHHHHHHH
Confidence 76555544443
No 53
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=59.99 E-value=11 Score=40.85 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=31.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
..+.+|.|.|||.+++ +++|+++|+++ |.|+++.+.+|
T Consensus 191 ~~~~~lfV~nLp~~vt----ee~L~~~F~~f--G~V~~v~i~~d 228 (346)
T TIGR01659 191 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GQIVQKNILRD 228 (346)
T ss_pred cccceeEEeCCCCccc----HHHHHHHHHhc--CCEEEEEEeec
Confidence 3467899999999887 68999999987 67888887764
No 54
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=59.69 E-value=28 Score=38.88 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=28.6
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
++|.|.|||.+.. +++|.+.|++. |.|.++.+++|
T Consensus 19 ~~v~vgnip~~~s----e~~l~~~~~~~--g~v~s~~~v~D 53 (435)
T KOG0108|consen 19 SSVFVGNIPYEGS----EEQLLSIFSGV--GPVLSFRLVYD 53 (435)
T ss_pred cceEecCCCCccc----HHHHHHHHhcc--Cccceeeeccc
Confidence 9999999999987 68999999876 56777666553
No 55
>smart00360 RRM RNA recognition motif.
Probab=56.39 E-value=13 Score=28.52 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=20.8
Q ss_pred cCCceEEEEecCHHHHHHHHhhhc
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLH 334 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~ 334 (726)
+..+.|||+|++.++|..|.+.++
T Consensus 36 ~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 36 KSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCceEEEEeCCHHHHHHHHHHcC
Confidence 457899999999999999988765
No 56
>smart00362 RRM_2 RNA recognition motif.
Probab=53.88 E-value=15 Score=28.28 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.1
Q ss_pred cCCceEEEEecCHHHHHHHHhhhcc
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~ 335 (726)
+..+.|||+|++..+|..|.+.+..
T Consensus 37 ~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 37 KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 3568999999999999999887653
No 57
>smart00360 RRM RNA recognition motif.
Probab=50.68 E-value=19 Score=27.57 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.8
Q ss_pred EecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCc
Q 004876 194 VRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (726)
Q Consensus 194 V~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (726)
|.|+|.+.. +++|+++|+++ |.|.++.+..+-
T Consensus 1 i~~l~~~~~----~~~l~~~f~~~--g~v~~~~i~~~~ 32 (71)
T smart00360 1 VGNLPPDVT----EEELRELFSKF--GKIESVRLVRDK 32 (71)
T ss_pred CCCCCcccC----HHHHHHHHHhh--CCEeEEEEEeCC
Confidence 568898876 68999999987 567777776653
No 58
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=48.86 E-value=22 Score=40.64 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=31.3
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
+++|.|.|||.+.+ +++|++.|+++ |.|.++.++.+
T Consensus 2 s~vv~V~nLp~~~t----e~~L~~~f~~f--G~V~~v~i~~~ 37 (481)
T TIGR01649 2 SPVVHVRNLPQDVV----EADLVEALIPF--GPVSYVMMLPG 37 (481)
T ss_pred ccEEEEcCCCCCCC----HHHHHHHHHhc--CCeeEEEEECC
Confidence 68999999999986 78999999987 78988887764
No 59
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=47.84 E-value=22 Score=27.49 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ 336 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~ 336 (726)
+.+.|||+|++.++|+.|.+..+..
T Consensus 39 ~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 39 SKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCC
Confidence 4789999999999999999876554
No 60
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=46.63 E-value=27 Score=35.32 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=29.4
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
.+||.|.|||.+.+ +++|.++|.++ |.+.++.+.+|
T Consensus 115 ~~~l~v~nL~~~~~----~~~l~~~F~~~--g~~~~~~~~~d 150 (306)
T COG0724 115 NNTLFVGNLPYDVT----EEDLRELFKKF--GPVKRVRLVRD 150 (306)
T ss_pred CceEEEeCCCCCCC----HHHHHHHHHhc--CceeEEEeeec
Confidence 49999999998887 79999999998 55666666654
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=45.11 E-value=19 Score=39.49 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=31.0
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchH
Q 004876 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKE 233 (726)
Q Consensus 192 VlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~ 233 (726)
|.|.|+|++.++ +.|.+.|+.+ |.|.+|.++.|.+.
T Consensus 79 ~~i~nl~~~~~~----~~~~d~f~~~--g~ilS~kv~~~~~g 114 (369)
T KOG0123|consen 79 VFIKNLDESIDN----KSLYDTFSEF--GNILSCKVATDENG 114 (369)
T ss_pred eeecCCCcccCc----HHHHHHHHhh--cCeeEEEEEEcCCC
Confidence 999999999875 7899999988 78999988877654
No 62
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=44.74 E-value=3.7e+02 Score=27.73 Aligned_cols=77 Identities=9% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCC-CCceEEEE-ecCc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccCCCCcccc
Q 004876 208 EQVDSYFKAIYP-DTFYRSMV-VTNN-KEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVD 284 (726)
Q Consensus 208 ~~L~~~f~~~~p-~~v~~v~i-~~d~-~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~rP~~r~~~~~~~g~kvd 284 (726)
+.++++.+++-. |.|.+..+ ..|+ .+..++..+.+.+..+.++....+.+ .++++
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~k----------------------a~~~~ 162 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEK----------------------AKTVE 162 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------cCCHH
Confidence 455666665532 45555444 3344 33344444444444444444333321 12444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004876 285 AIEYYNEKIKEIIPKLEAEQKI 306 (726)
Q Consensus 285 ai~~~~~~l~~l~~~I~~~~~~ 306 (726)
.+--.+++|.+++.+|+..+.+
T Consensus 163 d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 163 DLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4545677888888888876544
No 63
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=44.29 E-value=14 Score=43.14 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
+..++|+.|.+||++++ +++|++.|+++ |+|++|.+.-+
T Consensus 418 sV~SrTLwvG~i~k~v~----e~dL~~~feef--GeiqSi~li~~ 456 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVT----EQDLANLFEEF--GEIQSIILIPP 456 (894)
T ss_pred eEeeeeeeeccccchhh----HHHHHHHHHhc--ccceeEeeccC
Confidence 35789999999999988 79999999998 77888766544
No 64
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=41.38 E-value=38 Score=25.82 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=24.0
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
++|-|+|.|.+. .+.+.+||+++ |+|.++.+.
T Consensus 2 ~wI~V~Gf~~~~-----~~~vl~~F~~f--GeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPDL-----AEEVLEHFASF--GEIVDIYVP 33 (53)
T ss_pred cEEEEEeECchH-----HHHHHHHHHhc--CCEEEEEcC
Confidence 689999999866 46777899986 667665443
No 65
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=38.80 E-value=42 Score=33.58 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=20.7
Q ss_pred CCceEEEEecCHHHHHHHHhhhcc
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHA 335 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~ 335 (726)
..+.|||||.+.+.|..|.+.+..
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcC
Confidence 458999999999999999887653
No 66
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=34.75 E-value=74 Score=27.01 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=24.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhccCCC--CceEeecCCCCCCe
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPESREL 352 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~~~--~~~~v~~AP~P~DI 352 (726)
..++|.+.|.+++.|..|.+-+...+. ....+...|.+.|.
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 468999999999999999887766553 45667777766654
No 67
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.50 E-value=46 Score=32.62 Aligned_cols=90 Identities=14% Similarity=0.022 Sum_probs=47.0
Q ss_pred HHHHHHhcCCCCCCCcccchhHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhhheeeecCCcCCCcccHHHHHHH
Q 004876 544 EAELKEAWFPGDLGYGTRVPSDMLIVTIVFCYSCI-APLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLR 622 (726)
Q Consensus 544 ~re~~~~~~~~~f~~~~~y~~~l~~~~i~l~Ys~i-~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~esgG~~~~~~~~~ 622 (726)
|+...++..+-..|+.+.=.+...++.+.++|+.+ .|+.+..-...++..++.|++. -+|-.-.|..+-+ +.
T Consensus 52 P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~LY~~r----d~pLvlfgr~i~d---~~ 124 (187)
T KOG3142|consen 52 PRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFLYFLR----DEPLVLFGRQISD---RE 124 (187)
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHheeeec----CCCeEEeeEEecC---cc
Confidence 44444444433445555556677777777888866 6766666555555555555444 1122222222222 45
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 004876 623 LVAALLLYQITMLGYFGSKKF 643 (726)
Q Consensus 623 ~~~~l~i~q~~~~g~f~lk~~ 643 (726)
+++++.+. .+.++++.+.
T Consensus 125 ~l~~L~~~---ti~~lflt~~ 142 (187)
T KOG3142|consen 125 VLIGLVLI---TIPVLFLTSA 142 (187)
T ss_pred hhhhHHHH---HHHHHHHhhH
Confidence 56666654 3344445553
No 68
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=32.89 E-value=59 Score=31.43 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=33.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchH
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKE 233 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~ 233 (726)
.+.-|.|-|+|.+.+ +.+|+..|..+ |.+.+||++++-..
T Consensus 9 ~~~kVYVGnL~~~a~----k~eLE~~F~~y--G~lrsvWvArnPPG 48 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRAT----KRELERAFSKY--GPLRSVWVARNPPG 48 (195)
T ss_pred CCceEEeccCCCCcc----hHHHHHHHHhc--CcceeEEEeecCCC
Confidence 467799999999887 68999999988 67899999987544
No 69
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=32.78 E-value=43 Score=36.70 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.8
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccCC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQL 337 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~~ 337 (726)
...|++||+|.+.++|..|...+|..+
T Consensus 74 ~s~gcCFv~~~trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 74 QSKGCCFVKYYTRKEADEAINALHNQK 100 (510)
T ss_pred cccceEEEEeccHHHHHHHHHHhhccc
Confidence 568999999999999999999887654
No 70
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=31.81 E-value=64 Score=36.88 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=22.2
Q ss_pred CceEEEEecCHHHHHHHHhhhccCC
Q 004876 313 LGAALVFFTSRVAAASAAQSLHAQL 337 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~~ 337 (726)
.|.|||+|.+.++|..|.+.++...
T Consensus 464 ~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 464 VGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred cceEEEEECCHHHHHHHHHHcCCCE
Confidence 4789999999999999999987654
No 71
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=31.79 E-value=5.7e+02 Score=26.02 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=58.6
Q ss_pred CCHHHHHHhcCCCCCCCcccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhe---eeecCCcCCCcccHHH
Q 004876 542 KTEAELKEAWFPGDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQAL---KVYVPAYESYGRMWPH 618 (726)
Q Consensus 542 ~T~re~~~~~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~ll---yvy~~~~esgG~~~~~ 618 (726)
++++++.|.++.+.. |. |+....++.+.+-|+.++-+...-......+....-|...+ +...|+.+.-|+.+..
T Consensus 86 ~~~er~LeIMKDsri--G~-~Gv~al~~~lllk~~~l~~l~~~~~~~~l~i~~~~~r~~~~~~~~~~~p~~~Glg~~f~~ 162 (235)
T PF02654_consen 86 RDRERRLEIMKDSRI--GA-FGVLALVLVLLLKYAALSSLPSHGLALALLIAPVLARLSMLLLAAFSKPRPEGLGALFVG 162 (235)
T ss_pred CCHHHHHHHHhCCCC--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhHHhc
Confidence 445455666665443 22 45555555555555555544432223333344444555443 2233555555565543
Q ss_pred HH--HHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHhhccc
Q 004876 619 MF--LRLVAALLLYQITMLGYFGSKKFIYVGFLIPLPILSLIFVYICQKRFYK 669 (726)
Q Consensus 619 ~~--~~~~~~l~i~q~~~~g~f~lk~~~~~~~~~~l~~~t~~f~~~~~~~f~~ 669 (726)
-. +++..++.+.-+..+.+.... .......+...+.+..+.+++++++.-
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~lGG 214 (235)
T PF02654_consen 163 SAKKRQVLIALIILLLLALFLGGIP-WIGLLALLVALLLALLLARYARRRLGG 214 (235)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 344555544322222111111 111123344456677788888888753
No 72
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.68 E-value=39 Score=30.80 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 004876 14 FIIFVVLMCLFAWLSSKPG 32 (726)
Q Consensus 14 ~~i~~~~~~~F~~lR~~~~ 32 (726)
.+|+.++++.|++.|+|.+
T Consensus 76 GvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3455566777888777643
No 73
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=31.66 E-value=3.9e+02 Score=29.70 Aligned_cols=83 Identities=19% Similarity=0.408 Sum_probs=45.9
Q ss_pred CCCCceEEEEe-cCchH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccCCCCccccHHHHHHHHHHH
Q 004876 218 YPDTFYRSMVV-TNNKE-ANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKE 295 (726)
Q Consensus 218 ~p~~v~~v~i~-~d~~~-l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~rP~~r~~~~~~~g~kvdai~~~~~~l~~ 295 (726)
+|+. ....++ .|.++ +..+.++++++.++++....++++. | ++...+.-++++++.
T Consensus 227 f~d~-a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~----------~-----------k~~~k~~~~~~q~~~ 284 (406)
T PF02388_consen 227 FGDK-AKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKN----------P-----------KKKNKLKELEEQLAS 284 (406)
T ss_dssp CCCC-EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------T-----------HHHHHHHHHHHHHHH
T ss_pred cCCC-eEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------c-----------chhhHHHHHHHHHHH
Confidence 4666 445555 57754 4667778888888888877766532 1 011123345566666
Q ss_pred HHHHHHHHHHhh---hcc-cCCceEEEEecC
Q 004876 296 IIPKLEAEQKIT---LKE-KQLGAALVFFTS 322 (726)
Q Consensus 296 l~~~I~~~~~~~---~~~-~~~~~AFVtF~s 322 (726)
+++++++.++.. .+. .-.+.-||.+.+
T Consensus 285 ~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~ 315 (406)
T PF02388_consen 285 LEKRIEEAEELIAEYGDEIPLAGALFIYYGD 315 (406)
T ss_dssp HHHHHHHHHHHHHHH-SEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCCcceEEEEEEEEECC
Confidence 666666655432 111 224455666654
No 74
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=29.97 E-value=61 Score=31.75 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHhhccccccccchHHHh
Q 004876 622 RLVAALLLYQITMLGYFGSKKFIYVGFLIPLPILSLIFVYICQKRFYKSFSDTALEVAS 680 (726)
Q Consensus 622 ~~~~~l~i~q~~~~g~f~lk~~~~~~~~~~l~~~t~~f~~~~~~~f~~~~~~~pl~~~~ 680 (726)
..++|+++|-..+-|+|..|+-++-.+++.+..++++-=.+.-.+..|+.+..|.....
T Consensus 8 ~a~~~~l~F~aatqg~f~~r~~~~E~~~ll~~~f~lf~P~~~~d~i~ppy~~~p~~~~~ 66 (183)
T PF11874_consen 8 TALIAMLAFAAATQGWFLTRNKWWESVLLLLIAFTLFRPGFWMDMIYPPYEEVPPSELV 66 (183)
T ss_pred HHHHHHHHHHHHhcceeeecchHHHHHHHHHHHHHHhCchHHHHhccCccccCCHHHHH
Confidence 34667778888888898888876666666667777776677777788888888876554
No 75
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=29.90 E-value=1.4e+02 Score=34.25 Aligned_cols=24 Identities=13% Similarity=0.436 Sum_probs=19.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Q 004876 281 KRVDAIEYYNEKIKEIIPKLEAEQ 304 (726)
Q Consensus 281 ~kvdai~~~~~~l~~l~~~I~~~~ 304 (726)
+|-|..+|....|++|+.+++...
T Consensus 119 ek~d~~~wi~~~ideLe~q~d~~e 142 (575)
T KOG2150|consen 119 EKRDTMDWISNQIDELERQVDSFE 142 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999887633
No 76
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=29.13 E-value=6.9e+02 Score=26.17 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004876 361 FFQRQIRQYVVYVIVALTIMFYMIPIGLISA 391 (726)
Q Consensus 361 ~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~ 391 (726)
+.+|..|..+.....+.+.+.+..|+..+-+
T Consensus 6 k~~~~l~~~l~yl~lii~~~iiifPl~~~v~ 36 (282)
T COG3833 6 KKKRKLRLLLTYLLLIILAIIIIFPLLWVVL 36 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888999999998888889999765543
No 77
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.51 E-value=1.9e+02 Score=25.34 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=14.7
Q ss_pred CCcCCCcccHHHHHHHHHHHHHH
Q 004876 607 PAYESYGRMWPHMFLRLVAALLL 629 (726)
Q Consensus 607 ~~~esgG~~~~~~~~~~~~~l~i 629 (726)
|....+|+-||.+..-++.++.+
T Consensus 8 ~~~~~~g~sW~~LVGVv~~al~~ 30 (102)
T PF15176_consen 8 PGPGEGGRSWPFLVGVVVTALVT 30 (102)
T ss_pred CCCCCCCcccHhHHHHHHHHHHH
Confidence 55677899999766444444433
No 78
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=27.54 E-value=58 Score=31.62 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=25.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEE
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v 225 (726)
.+++|.|-|+|.+++ +.++++.|.++ |.|..+
T Consensus 5 ~~~~iyvGNLP~diR----ekeieDlFyKy--g~i~~i 36 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIR----EKEIEDLFYKY--GRIREI 36 (241)
T ss_pred ccceEEecCCCcchh----hccHHHHHhhh--cceEEE
Confidence 578999999999999 47899999887 445444
No 79
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.48 E-value=5e+02 Score=25.74 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcc
Q 004876 648 FLIPLPILSLIFVYICQKRFY 668 (726)
Q Consensus 648 ~~~~l~~~t~~f~~~~~~~f~ 668 (726)
..+.+-++++...+|++++|.
T Consensus 182 ~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 182 VYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 444445566777888888875
No 80
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.59 E-value=3.9e+02 Score=30.09 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=21.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 004876 568 IVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQ 600 (726)
Q Consensus 568 ~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~ 600 (726)
..--+++|+.+.|++..|++==|++.=+--|..
T Consensus 372 ~~p~avfya~v~P~~s~F~l~k~v~rP~~~~~k 404 (546)
T KOG0718|consen 372 LLPSAVFYALVFPITSYFGLKKFVLRPYLLKRK 404 (546)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHeecHHHHhhH
Confidence 445567888888888777766666655544443
No 81
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.57 E-value=97 Score=25.18 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=26.7
Q ss_pred ceEEEEecCHHHHHHHHhhhccCCCCceEeecCCCCCCe
Q 004876 314 GAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESREL 352 (726)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP~P~DI 352 (726)
....|||+|..+|-.+-+.+...+ ..++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~g---i~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNG---IPVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC---CcEEEeCCChhc
Confidence 467999999999998888765544 345556777776
No 82
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=26.20 E-value=2.9e+02 Score=29.17 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhheeeecCCcCCCc---ccHHHHHHHHHHHHHHHHHHHHHHH
Q 004876 580 PLIIPFGVVYFALGWLILRNQALKVYVPAYESYG---RMWPHMFLRLVAALLLYQITMLGYF 638 (726)
Q Consensus 580 Plil~~~~~yf~~~y~v~Ky~llyvy~~~~esgG---~~~~~~~~~~~~~l~i~q~~~~g~f 638 (726)
|..+++|+++.++.+-+||+-+.-+..... +.. ..+|++.--+++|+++.+....-+|
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~-~~~~~~~~~~R~~lAvliaivIs~pl~l~iF 106 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDG-SRKRLLQALPRLLLAVLIAIVISEPLELKIF 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999886643221 111 3455555556666667666665555
No 83
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=25.57 E-value=94 Score=31.86 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.0
Q ss_pred ccCCceEEEEecCHHHHHHHHhhhcc
Q 004876 310 EKQLGAALVFFTSRVAAASAAQSLHA 335 (726)
Q Consensus 310 ~~~~~~AFVtF~s~~~a~~a~q~~~~ 335 (726)
.+..|++||+|.+..++..|......
T Consensus 229 gKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 229 GKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred cccccceeeeecCHHHHHHHHHhhcc
Confidence 46789999999999999999887544
No 84
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=24.93 E-value=70 Score=31.72 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.4
Q ss_pred cCCceEEEEecCHHHHHHHHhhh
Q 004876 311 KQLGAALVFFTSRVAAASAAQSL 333 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~ 333 (726)
..-++|||.|++.+-|.+|+.+.
T Consensus 90 NSKgYAFVEFEs~eVA~IaAETM 112 (214)
T KOG4208|consen 90 NSKGYAFVEFESEEVAKIAAETM 112 (214)
T ss_pred CcCceEEEEeccHHHHHHHHHHh
Confidence 45789999999999999999874
No 85
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=24.88 E-value=3.3e+02 Score=25.97 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=23.0
Q ss_pred ecCCCCCCe-eeCCcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004876 344 SDAPESREL-IWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIP 385 (726)
Q Consensus 344 ~~AP~P~DI-iW~NL~~~~~~r~~R~~~~~~~~~~l~if~~iP 385 (726)
..+|+|+|. .|.|=-++.---+--+.++.+++..++..+.-|
T Consensus 32 fa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp 74 (188)
T KOG4050|consen 32 FARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISP 74 (188)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCH
Confidence 467999998 677755554333333444444444444334334
No 86
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.43 E-value=1.5e+02 Score=29.73 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=25.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004876 147 LWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMS 182 (726)
Q Consensus 147 lw~h~i~~~~~~~~~~~~l~~e~~~~~~~R~~~l~~ 182 (726)
+-++++.-.++.++..+++|+-...+++.|++....
T Consensus 51 ~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~ 86 (205)
T PRK06231 51 FIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEA 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555445555566778999999999999887643
No 87
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=24.05 E-value=2e+02 Score=28.53 Aligned_cols=95 Identities=17% Similarity=0.276 Sum_probs=51.5
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCcCCCcccHHHHHHHHHHHHHHHHH-HHHHHHhhccc---c-cch
Q 004876 573 FCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQI-TMLGYFGSKKF---I-YVG 647 (726)
Q Consensus 573 l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~-~~~g~f~lk~~---~-~~~ 647 (726)
.++..-.|+.++.+++||+...++-+.|.=+.++. | +.+....|+-+.-+ +..|...+++. . ...
T Consensus 50 ~v~~~~~~~~i~~~i~yf~yLrYiL~~~~~f~id~--e--------pYR~FY~~Isli~~l~~~gyvlvr~~s~~~~~y~ 119 (206)
T PF09874_consen 50 YVFFISPLILIPLFIFYFIYLRYILIRNRNFMIDF--E--------PYRFFYYGISLIGFLSFLGYVLVRRFSFEVYPYY 119 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhccceeEech--h--------HHHHHHHHHhhhhheeecchhhheeccchhhhHH
Confidence 34444566777778888887766655554444432 1 22333333333222 23344445553 1 222
Q ss_pred hhHHH-HHHHHHHHHHHHhhccccccccchH
Q 004876 648 FLIPL-PILSLIFVYICQKRFYKSFSDTALE 677 (726)
Q Consensus 648 ~~~~l-~~~t~~f~~~~~~~f~~~~~~~pl~ 677 (726)
..+.+ .+..+.|.++.+.+|.|-+.+=-.+
T Consensus 120 ~yL~~v~laVl~fr~~Fr~ky~RdyTyG~Ve 150 (206)
T PF09874_consen 120 TYLGFVFLAVLAFRYYFRSKYGRDYTYGVVE 150 (206)
T ss_pred HHHHHHHHHHHHHhhheeeeecccceeEEEE
Confidence 22222 3356678889999999988765443
No 88
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.11 E-value=1.8e+02 Score=20.70 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 004876 3 FDSFLTSLGTSFIIFVVLMCLFAWLSSKPG 32 (726)
Q Consensus 3 ~~~~~~~l~~~~~i~~~~~~~F~~lR~~~~ 32 (726)
+-++..+....+++-.+.+..|.+.|||++
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 445666666666666666777777787753
No 89
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=23.07 E-value=2.4e+02 Score=26.37 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q 004876 562 VPSDMLIVTIVFCYSCI-APLIIPFGVVYFALGWLILRNQ 600 (726)
Q Consensus 562 y~~~l~~~~i~l~Ys~i-~Plil~~~~~yf~~~y~v~Ky~ 600 (726)
..+...++++.++|+.+ .|..++..++.....+++++.+
T Consensus 41 ~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~ 80 (153)
T PF03208_consen 41 QTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSR 80 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444444445544 5866666655555555555443
No 90
>PRK11020 hypothetical protein; Provisional
Probab=22.55 E-value=3.4e+02 Score=24.27 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHH
Q 004876 232 KEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQK 305 (726)
Q Consensus 232 ~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~ 305 (726)
.++..|.++.++..+++..+... | ..+-|.-+++|++.++.+|+..+.
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~r-------------------------g-d~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLR-------------------------G-DAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------------------------C-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766431 1 122345566777777777776554
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=21.97 E-value=86 Score=27.66 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.5
Q ss_pred cCCceEEEEecCHHHHHHHHhhhcc
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~ 335 (726)
...|+|||.+++..+|..|+.-+..
T Consensus 55 ~TrGTAFVVYedi~dAk~A~dhlsg 79 (124)
T KOG0114|consen 55 ETRGTAFVVYEDIFDAKKACDHLSG 79 (124)
T ss_pred CcCceEEEEehHhhhHHHHHHHhcc
Confidence 4579999999999999999987644
No 92
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=21.75 E-value=66 Score=35.32 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=30.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
.++|||++.|+|.+-. -+.|.+.|... |.|..|.+|.-
T Consensus 229 l~srtivaenLP~Dh~----~enl~kiFg~~--G~IksIRIckP 266 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHS----YENLSKIFGTV--GSIKSIRICKP 266 (484)
T ss_pred cccceEEEecCCcchH----HHHHHHHhhcc--cceeeeeecCC
Confidence 4789999999998765 47788888766 78888988875
No 93
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=20.32 E-value=9.2e+02 Score=24.90 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=43.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHH-HhhhhhHHHHHHHhhc-CchHHHHHHHHhCCCcchHHHHHHHHHHhhhhhhhhhhhH
Q 004876 451 SHAVRAASGKYFYFTVLNVFIG-VTVGGTLFKTFKSIEK-DPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIV 528 (726)
Q Consensus 451 S~~~~s~~~k~f~f~~in~flv-~~i~~~~~~~l~~~~~-~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~ 528 (726)
|..|..+.-|......+...+. +.+.|+....++...+ ++.+..+.++.++|.--.+++-.++..-++..++.++=++
T Consensus 71 s~eqq~~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L~ivP 150 (248)
T PF06790_consen 71 SPEQQNVLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFMLFIVP 150 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5566667777776666655554 3334555555554432 4457777778777654444443333333344444555444
Q ss_pred HH
Q 004876 529 PL 530 (726)
Q Consensus 529 ~l 530 (726)
..
T Consensus 151 GI 152 (248)
T PF06790_consen 151 GI 152 (248)
T ss_pred HH
Confidence 44
No 94
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=20.13 E-value=2.7e+02 Score=22.18 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=29.3
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHh----CCCCce-----EEEEecCchH
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----YPDTFY-----RSMVVTNNKE 233 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~----~p~~v~-----~v~i~~d~~~ 233 (726)
..-+|.|+|+-. +. .+++++||.++ .|.+|+ ++++++...+
T Consensus 4 rpeavhirGvd~-ls----T~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~ 53 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LS----TDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEE 53 (62)
T ss_pred eeceEEEEcCCC-CC----HHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHH
Confidence 345799999853 44 58899999999 455553 6788876643
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=20.02 E-value=1.5e+02 Score=33.24 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=33.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCc
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (726)
..-.+|.|-||+.+++ ++.|++.|.++ |+|.+|.++++.
T Consensus 8 ~~gMRIYVGNLSydVT----EDDLravFSeF--GsVkdVEIpRET 46 (759)
T PLN03213 8 GGGVRLHVGGLGESVG----RDDLLKIFSPM--GTVDAVEFVRTK 46 (759)
T ss_pred CcceEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEeccc
Confidence 4568999999999988 68999999998 889999988753
Done!