Query 004876
Match_columns 726
No_of_seqs 223 out of 958
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 97.4 0.00067 2.3E-08 58.3 8.9 78 187-346 17-96 (99)
2 2dnz_A Probable RNA-binding pr 97.3 0.0014 4.9E-08 55.4 10.5 82 187-350 3-86 (95)
3 2lxi_A RNA-binding protein 10; 97.2 0.0007 2.4E-08 57.2 7.5 35 189-228 1-35 (91)
4 3s8s_A Histone-lysine N-methyl 97.2 0.0013 4.6E-08 57.6 8.9 79 187-347 4-84 (110)
5 1x5s_A Cold-inducible RNA-bind 97.2 0.0026 8.9E-08 54.6 10.6 38 186-229 9-46 (102)
6 2jrs_A RNA-binding protein 39; 97.1 0.0021 7.2E-08 56.1 9.6 84 186-351 23-108 (108)
7 4a8x_A RNA-binding protein wit 97.1 0.0016 5.3E-08 54.2 8.2 82 187-349 2-85 (88)
8 1whw_A Hypothetical protein ri 97.1 0.0028 9.6E-08 54.0 10.0 82 187-350 6-89 (99)
9 3mdf_A Peptidyl-prolyl CIS-tra 97.1 0.0019 6.4E-08 53.3 8.5 37 187-229 5-41 (85)
10 3p5t_L Cleavage and polyadenyl 97.1 0.0011 3.8E-08 55.6 7.1 81 190-350 2-84 (90)
11 3bs9_A Nucleolysin TIA-1 isofo 97.1 0.0019 6.6E-08 53.5 8.4 38 187-230 4-41 (87)
12 1x5u_A Splicing factor 3B subu 97.1 0.0038 1.3E-07 53.8 10.6 82 186-349 12-95 (105)
13 2dgs_A DAZ-associated protein 97.0 0.0043 1.5E-07 52.9 10.7 38 186-229 7-44 (99)
14 2dgp_A Bruno-like 4, RNA bindi 97.0 0.0047 1.6E-07 53.3 11.1 81 186-348 10-95 (106)
15 2x1f_A MRNA 3'-END-processing 97.0 0.0028 9.6E-08 53.7 9.4 79 189-349 2-82 (96)
16 1x5t_A Splicing factor 3B subu 97.0 0.0027 9.2E-08 53.7 9.2 79 187-347 3-84 (96)
17 2cpz_A CUG triplet repeat RNA- 97.0 0.0035 1.2E-07 55.1 9.9 37 187-229 23-59 (115)
18 1fxl_A Paraneoplastic encephal 97.0 0.0042 1.4E-07 57.8 11.1 101 188-370 1-109 (167)
19 2e5h_A Zinc finger CCHC-type a 97.0 0.003 1E-07 53.2 8.9 38 186-229 13-50 (94)
20 3md1_A Nuclear and cytoplasmic 97.0 0.0034 1.2E-07 51.4 8.9 76 190-347 2-79 (83)
21 2lkz_A RNA-binding protein 5; 97.0 0.0015 5.2E-08 55.7 6.8 39 187-229 7-45 (95)
22 2cqc_A Arginine/serine-rich sp 96.9 0.0037 1.3E-07 52.7 9.2 38 186-229 12-49 (95)
23 2dgv_A HnRNP M, heterogeneous 96.9 0.0038 1.3E-07 52.3 9.1 38 186-229 5-42 (92)
24 2dgo_A Cytotoxic granule-assoc 96.9 0.0059 2E-07 53.6 10.5 39 186-230 12-50 (115)
25 2cph_A RNA binding motif prote 96.9 0.0069 2.4E-07 52.3 10.6 83 186-349 12-97 (107)
26 2do4_A Squamous cell carcinoma 96.8 0.0055 1.9E-07 52.3 9.7 79 187-348 15-95 (100)
27 2cqi_A Nucleolysin TIAR; RNA r 96.8 0.0099 3.4E-07 51.0 11.3 37 187-229 13-49 (103)
28 3ucg_A Polyadenylate-binding p 96.8 0.0045 1.5E-07 51.4 8.9 37 188-230 5-41 (89)
29 4f25_A Polyadenylate-binding p 96.8 0.0042 1.4E-07 54.8 9.0 36 188-229 4-39 (115)
30 2cq3_A RNA-binding protein 9; 96.8 0.01 3.4E-07 50.9 11.3 38 186-229 12-49 (103)
31 2div_A TRNA selenocysteine ass 96.8 0.0067 2.3E-07 51.6 10.0 39 186-230 6-45 (99)
32 1p27_B RNA-binding protein 8A; 96.8 0.0064 2.2E-07 52.4 9.9 38 187-230 21-58 (106)
33 1b7f_A Protein (SXL-lethal pro 96.8 0.0057 2E-07 57.1 10.2 101 188-370 2-110 (168)
34 2cqg_A TDP-43, TAR DNA-binding 96.8 0.0059 2E-07 52.4 9.4 38 187-230 13-50 (103)
35 2fy1_A RNA-binding motif prote 96.8 0.0084 2.9E-07 52.9 10.5 37 187-229 5-41 (116)
36 2dnm_A SRP46 splicing factor; 96.8 0.0053 1.8E-07 52.7 9.0 36 187-228 11-46 (103)
37 1x4h_A RNA-binding protein 28; 96.8 0.0083 2.8E-07 52.2 10.3 37 187-229 13-49 (111)
38 2dnh_A Bruno-like 5, RNA bindi 96.7 0.0089 3E-07 51.4 10.3 37 187-229 13-49 (105)
39 2cqb_A Peptidyl-prolyl CIS-tra 96.7 0.0044 1.5E-07 53.1 8.2 37 186-228 9-45 (102)
40 2ywk_A Putative RNA-binding pr 96.7 0.0064 2.2E-07 51.3 9.0 38 186-229 13-50 (95)
41 1oo0_B CG8781-PA, drosophila Y 96.7 0.0074 2.5E-07 52.5 9.6 37 186-228 23-59 (110)
42 1wi8_A EIF-4B, eukaryotic tran 96.7 0.0078 2.7E-07 51.8 9.6 37 186-229 12-48 (104)
43 1p1t_A Cleavage stimulation fa 96.7 0.0042 1.4E-07 53.4 7.7 81 187-349 6-88 (104)
44 2cqd_A RNA-binding region cont 96.7 0.0088 3E-07 52.6 10.0 38 186-229 14-51 (116)
45 2cq0_A Eukaryotic translation 96.7 0.0058 2E-07 52.4 8.5 38 186-229 12-49 (103)
46 3s7r_A Heterogeneous nuclear r 96.7 0.005 1.7E-07 51.0 7.7 39 186-230 8-46 (87)
47 1h2v_Z 20 kDa nuclear CAP bind 96.6 0.008 2.7E-07 55.9 9.9 80 187-348 37-118 (156)
48 2dnp_A RNA-binding protein 14; 96.6 0.015 5.2E-07 48.4 10.5 36 186-227 6-41 (90)
49 2cpf_A RNA binding motif prote 96.6 0.0074 2.5E-07 51.2 8.7 39 187-231 3-41 (98)
50 2la6_A RNA-binding protein FUS 96.6 0.0098 3.3E-07 50.6 9.5 33 186-224 10-42 (99)
51 3ex7_B RNA-binding protein 8A; 96.6 0.01 3.5E-07 52.9 9.8 38 186-229 19-56 (126)
52 2d9p_A Polyadenylate-binding p 96.6 0.0096 3.3E-07 51.0 9.2 38 186-229 12-49 (103)
53 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.5 0.0091 3.1E-07 54.2 9.4 37 187-229 61-97 (140)
54 2dhg_A TRNA selenocysteine ass 96.5 0.014 4.9E-07 50.0 10.2 39 186-229 6-44 (104)
55 2dng_A Eukaryotic translation 96.5 0.011 3.8E-07 50.7 9.4 38 186-230 12-49 (103)
56 3ns6_A Eukaryotic translation 96.5 0.0045 1.5E-07 53.0 6.6 35 312-346 53-90 (100)
57 2ki2_A SS-DNA binding protein 96.5 0.0044 1.5E-07 51.7 6.4 34 190-229 2-35 (90)
58 3ulh_A THO complex subunit 4; 96.5 0.011 3.7E-07 51.1 9.1 38 186-229 26-63 (107)
59 2khc_A Testis-specific RNP-typ 96.5 0.0067 2.3E-07 53.5 7.9 37 187-229 38-74 (118)
60 2cqp_A RNA-binding protein 12; 96.5 0.0036 1.2E-07 53.2 5.9 39 312-350 56-96 (98)
61 2dgx_A KIAA0430 protein; RRM d 96.5 0.021 7.3E-07 48.3 10.7 37 186-228 6-46 (96)
62 2err_A Ataxin-2-binding protei 96.5 0.01 3.5E-07 51.6 8.8 37 186-228 26-62 (109)
63 2a3j_A U1 small nuclear ribonu 96.5 0.0095 3.2E-07 53.6 8.7 43 313-355 72-116 (127)
64 2dgt_A RNA-binding protein 30; 96.4 0.019 6.6E-07 48.0 10.2 36 186-227 7-42 (92)
65 2kxn_B Transformer-2 protein h 96.4 0.011 3.8E-07 53.3 9.2 37 187-229 44-80 (129)
66 2cpe_A RNA-binding protein EWS 96.4 0.014 4.8E-07 50.9 9.7 36 311-346 63-100 (113)
67 1x4a_A Splicing factor, argini 96.4 0.023 7.9E-07 49.2 11.0 35 187-227 20-54 (109)
68 2kt5_A RNA and export factor-b 96.4 0.019 6.5E-07 51.1 10.6 37 187-229 33-69 (124)
69 2dgw_A Probable RNA-binding pr 96.4 0.012 4E-07 49.2 8.6 37 187-230 8-44 (91)
70 2dnq_A RNA-binding protein 4B; 96.4 0.024 8.2E-07 47.2 10.6 35 187-227 6-40 (90)
71 1uaw_A Mouse-musashi-1; RNP-ty 96.4 0.0059 2E-07 49.2 6.5 34 190-229 1-34 (77)
72 3lqv_A PRE-mRNA branch site pr 96.4 0.015 5.2E-07 50.9 9.7 95 187-368 6-102 (115)
73 3nmr_A Cugbp ELAV-like family 96.4 0.015 5.1E-07 54.6 10.2 103 188-370 2-116 (175)
74 1s79_A Lupus LA protein; RRM, 96.4 0.01 3.6E-07 51.2 8.3 37 187-229 9-45 (103)
75 2mss_A Protein (musashi1); RNA 96.4 0.0096 3.3E-07 47.7 7.5 31 191-227 1-31 (75)
76 1x4g_A Nucleolysin TIAR; struc 96.4 0.023 8E-07 49.2 10.6 36 187-228 23-58 (109)
77 1u6f_A Tcubp1, RNA-binding pro 96.4 0.014 4.9E-07 53.0 9.6 37 187-229 40-76 (139)
78 1iqt_A AUF1, heterogeneous nuc 96.3 0.007 2.4E-07 48.5 6.4 31 191-227 1-31 (75)
79 2ek1_A RNA-binding protein 12; 96.3 0.005 1.7E-07 51.9 5.8 35 312-346 56-92 (95)
80 1wg5_A Heterogeneous nuclear r 96.3 0.012 4.2E-07 50.6 8.4 32 187-224 13-44 (104)
81 2dis_A Unnamed protein product 96.3 0.024 8.2E-07 49.0 10.3 36 187-228 6-42 (109)
82 2dha_A FLJ20171 protein; RRM d 96.3 0.0083 2.8E-07 53.7 7.4 39 188-230 22-62 (123)
83 1x4c_A Splicing factor, argini 96.3 0.014 4.9E-07 50.6 8.7 35 187-227 13-47 (108)
84 4f02_A Polyadenylate-binding p 96.3 0.019 6.6E-07 56.3 10.7 101 188-370 14-124 (213)
85 1x4e_A RNA binding motif, sing 96.3 0.0084 2.9E-07 49.4 6.9 37 187-229 3-39 (85)
86 2do0_A HnRNP M, heterogeneous 96.3 0.02 7E-07 49.9 9.7 37 187-229 13-49 (114)
87 2cpd_A Apobec-1 stimulating pr 96.3 0.032 1.1E-06 47.3 10.7 36 186-225 12-47 (99)
88 2dgu_A Heterogeneous nuclear r 96.3 0.029 1E-06 48.0 10.4 34 187-226 9-42 (103)
89 2cpj_A Non-POU domain-containi 96.2 0.021 7.1E-07 48.5 9.4 36 186-227 12-47 (99)
90 2rs2_A Musashi-1, RNA-binding 96.2 0.016 5.3E-07 50.5 8.7 37 187-229 23-59 (109)
91 3md3_A Nuclear and cytoplasmic 96.2 0.025 8.4E-07 52.4 10.6 33 190-228 1-33 (166)
92 2dh8_A DAZ-associated protein 96.2 0.011 3.7E-07 50.9 7.4 39 186-230 13-51 (105)
93 1wf1_A RNA-binding protein RAL 96.2 0.02 7E-07 49.7 9.1 35 187-227 25-60 (110)
94 2qfj_A FBP-interacting repress 96.1 0.031 1.1E-06 54.4 11.4 36 188-229 27-62 (216)
95 2jwn_A Embryonic polyadenylate 96.1 0.016 5.5E-07 51.5 8.4 36 188-229 35-70 (124)
96 2e44_A Insulin-like growth fac 96.1 0.047 1.6E-06 45.8 10.9 33 187-225 13-45 (96)
97 1x4b_A Heterogeneous nuclear r 96.1 0.02 6.8E-07 50.2 8.8 37 188-230 26-62 (116)
98 2lea_A Serine/arginine-rich sp 96.1 0.017 5.7E-07 52.5 8.4 37 187-229 45-81 (135)
99 2kn4_A Immunoglobulin G-bindin 96.1 0.029 9.9E-07 52.1 10.2 37 187-229 68-104 (158)
100 2dnl_A Cytoplasmic polyadenyla 96.1 0.013 4.3E-07 51.5 7.2 31 187-223 6-36 (114)
101 1nu4_A U1A RNA binding domain; 96.1 0.02 7E-07 48.2 8.3 40 313-352 51-92 (97)
102 2f3j_A RNA and export factor b 96.0 0.022 7.4E-07 54.4 9.3 83 187-352 86-170 (177)
103 2jvr_A Nucleolar protein 3; RN 96.0 0.027 9.1E-07 49.3 9.1 36 312-347 66-103 (111)
104 3r27_A HnRNP L, heterogeneous 96.0 0.039 1.3E-06 47.3 9.8 38 185-228 17-54 (100)
105 3n9u_C Cleavage and polyadenyl 96.0 0.022 7.6E-07 53.1 9.0 79 188-346 54-134 (156)
106 1wf0_A TDP-43, TAR DNA-binding 96.0 0.01 3.6E-07 49.2 6.0 35 187-227 3-37 (88)
107 1l3k_A Heterogeneous nuclear r 96.0 0.037 1.3E-06 53.0 10.7 39 186-230 10-48 (196)
108 2j76_E EIF-4B, EIF4B, eukaryot 96.0 0.01 3.5E-07 50.7 6.0 36 187-229 17-52 (100)
109 2cq4_A RNA binding motif prote 95.9 0.012 4E-07 51.6 6.4 36 188-229 24-59 (114)
110 1x5o_A RNA binding motif, sing 95.9 0.037 1.3E-06 48.3 9.5 37 187-229 23-59 (114)
111 2cpy_A RNA-binding protein 12; 95.9 0.016 5.4E-07 50.8 6.9 36 187-228 13-49 (114)
112 2krb_A Eukaryotic translation 95.9 0.021 7.3E-07 46.5 7.3 36 189-226 1-38 (81)
113 2hvz_A Splicing factor, argini 95.8 0.05 1.7E-06 46.3 9.9 33 191-229 2-34 (101)
114 3beg_B Splicing factor, argini 95.8 0.026 9E-07 49.5 8.2 34 188-227 15-48 (115)
115 2cjk_A Nuclear polyadenylated 95.8 0.013 4.3E-07 54.7 6.5 101 188-370 2-108 (167)
116 1why_A Hypothetical protein ri 95.8 0.058 2E-06 45.5 10.1 34 187-226 15-48 (97)
117 2jvo_A Nucleolar protein 3; nu 95.8 0.043 1.5E-06 47.6 9.4 34 187-226 29-62 (108)
118 1rk8_A CG8781-PA, CG8781-PA pr 95.8 0.036 1.2E-06 52.0 9.5 38 186-229 69-106 (165)
119 2fc8_A NCL protein; structure 95.8 0.031 1.1E-06 47.6 8.3 38 312-349 53-92 (102)
120 1whx_A Hypothetical protein ri 95.7 0.029 9.8E-07 49.0 8.0 34 187-226 8-41 (111)
121 2e5j_A Methenyltetrahydrofolat 95.7 0.074 2.5E-06 44.8 10.4 38 312-349 55-94 (97)
122 2db1_A Heterogeneous nuclear r 95.7 0.018 6E-07 51.0 6.6 39 187-229 15-54 (118)
123 2xnq_A Nuclear polyadenylated 95.6 0.076 2.6E-06 44.9 10.1 36 186-227 19-55 (97)
124 2cpx_A Hypothetical protein FL 95.6 0.026 9.1E-07 49.2 7.4 36 311-346 65-102 (115)
125 2kvi_A Nuclear polyadenylated 95.6 0.038 1.3E-06 46.6 8.1 36 186-227 7-43 (96)
126 2hgl_A HNRPF protein, heteroge 95.6 0.022 7.4E-07 51.9 6.9 37 187-229 42-81 (136)
127 2i2y_A Fusion protein consists 95.5 0.08 2.7E-06 48.6 10.7 76 187-349 71-148 (150)
128 1fj7_A Nucleolin RBD1, protein 95.5 0.028 9.5E-07 47.9 7.0 36 311-347 56-93 (101)
129 2cpi_A CCR4-NOT transcription 95.5 0.014 4.6E-07 51.0 5.1 82 187-347 13-99 (111)
130 2nlw_A Eukaryotic translation 95.5 0.039 1.3E-06 47.5 7.9 38 312-349 60-100 (105)
131 1wg1_A KIAA1579 protein, homol 95.5 0.032 1.1E-06 46.2 7.1 36 314-349 41-78 (88)
132 2dnn_A RNA-binding protein 12; 95.5 0.026 8.8E-07 49.3 6.6 36 187-229 14-49 (109)
133 2lmi_A GRSF-1, G-rich sequence 95.4 0.033 1.1E-06 48.2 7.2 38 187-228 9-47 (107)
134 1wez_A HnRNP H', FTP-3, hetero 95.4 0.023 7.8E-07 48.8 6.1 36 187-229 13-48 (102)
135 2la4_A Nuclear and cytoplasmic 95.4 0.058 2E-06 45.8 8.6 35 187-227 25-59 (101)
136 2qfj_A FBP-interacting repress 95.4 0.051 1.7E-06 52.9 9.3 37 188-230 124-160 (216)
137 2pe8_A Splicing factor 45; RRM 95.4 0.058 2E-06 46.6 8.5 84 187-348 6-93 (105)
138 3md3_A Nuclear and cytoplasmic 95.3 0.061 2.1E-06 49.7 9.3 38 187-230 85-122 (166)
139 1x4f_A Matrin 3; structural ge 95.3 0.041 1.4E-06 48.2 7.4 35 187-227 23-58 (112)
140 2m2b_A RNA-binding protein 10; 95.3 0.039 1.3E-06 49.6 7.5 37 187-229 21-59 (131)
141 3sde_A Paraspeckle component 1 95.3 0.12 4E-06 52.4 11.9 96 187-370 20-117 (261)
142 3q2s_C Cleavage and polyadenyl 95.2 0.042 1.4E-06 54.7 7.9 80 188-347 67-148 (229)
143 2fc9_A NCL protein; structure 95.1 0.059 2E-06 45.8 7.8 35 312-346 52-88 (101)
144 1b7f_A Protein (SXL-lethal pro 95.1 0.065 2.2E-06 49.7 8.8 38 187-230 87-124 (168)
145 2adc_A Polypyrimidine tract-bi 95.0 0.16 5.6E-06 50.1 11.9 36 187-228 32-68 (229)
146 3nmr_A Cugbp ELAV-like family 95.0 0.09 3.1E-06 49.0 9.4 37 187-229 93-129 (175)
147 1fxl_A Paraneoplastic encephal 95.0 0.093 3.2E-06 48.4 9.3 37 187-229 86-122 (167)
148 3smz_A Protein raver-1, ribonu 94.9 0.1 3.4E-06 53.4 10.2 57 314-370 58-116 (284)
149 2hgn_A Heterogeneous nuclear r 94.9 0.029 9.9E-07 51.3 5.4 35 187-228 44-78 (139)
150 1wel_A RNA-binding protein 12; 94.8 0.023 7.9E-07 50.6 4.6 27 187-217 23-49 (124)
151 3tyt_A Heterogeneous nuclear r 94.8 0.17 5.9E-06 49.2 11.1 36 187-228 2-38 (205)
152 2g4b_A Splicing factor U2AF 65 94.7 0.065 2.2E-06 50.0 7.7 38 187-230 92-129 (172)
153 2hgm_A HNRPF protein, heteroge 94.7 0.059 2E-06 48.3 6.8 27 187-217 40-66 (126)
154 2e5g_A U6 snRNA-specific termi 94.6 0.13 4.4E-06 43.0 8.5 33 187-225 6-38 (94)
155 2cqh_A IGF-II mRNA-binding pro 94.4 0.14 4.6E-06 42.7 8.2 35 313-347 44-81 (93)
156 2wbr_A GW182, gawky, LD47780P; 94.4 0.24 8.2E-06 41.2 9.3 72 187-346 5-78 (89)
157 2voo_A Lupus LA protein; RNA-b 94.4 0.064 2.2E-06 51.8 6.8 35 189-229 109-143 (193)
158 1qm9_A Polypyrimidine tract-bi 94.3 0.17 5.9E-06 48.4 9.9 35 188-228 2-37 (198)
159 1sjr_A Polypyrimidine tract-bi 94.3 0.27 9.2E-06 46.0 10.5 34 314-347 85-122 (164)
160 1l3k_A Heterogeneous nuclear r 94.3 0.11 3.9E-06 49.4 8.3 38 187-230 102-139 (196)
161 2ghp_A U4/U6 snRNA-associated 94.3 0.21 7.2E-06 51.1 10.9 99 187-371 39-139 (292)
162 2cjk_A Nuclear polyadenylated 94.2 0.13 4.6E-06 47.5 8.5 36 188-229 86-121 (167)
163 3pgw_S U1-70K; protein-RNA com 94.2 0.13 4.6E-06 56.2 9.6 85 188-354 101-187 (437)
164 2yh0_A Splicing factor U2AF 65 94.0 0.18 6.1E-06 48.1 9.1 78 187-346 112-191 (198)
165 4f02_A Polyadenylate-binding p 93.9 0.15 5E-06 49.8 8.5 36 188-229 102-137 (213)
166 2lcw_A RNA-binding protein FUS 92.5 0.014 4.8E-07 51.3 0.0 36 311-346 55-92 (116)
167 3smz_A Protein raver-1, ribonu 93.4 0.17 6E-06 51.5 8.3 82 187-350 182-265 (284)
168 2diu_A KIAA0430 protein; struc 93.0 0.13 4.3E-06 43.4 5.2 41 314-354 47-89 (96)
169 1fje_B Nucleolin RBD12, protei 92.8 0.2 6.9E-06 46.8 7.2 60 311-371 52-121 (175)
170 3pgw_A U1-A; protein-RNA compl 92.8 0.67 2.3E-05 47.0 11.6 35 187-227 7-45 (282)
171 3egn_A RNA-binding protein 40; 92.7 0.065 2.2E-06 48.8 3.4 36 311-346 90-127 (143)
172 2g4b_A Splicing factor U2AF 65 92.6 1.3 4.6E-05 40.7 12.6 57 313-370 51-115 (172)
173 3sde_A Paraspeckle component 1 92.4 0.35 1.2E-05 48.7 8.8 37 188-230 95-131 (261)
174 2yh0_A Splicing factor U2AF 65 91.7 0.24 8E-06 47.2 6.2 26 188-217 3-28 (198)
175 2cq2_A Hypothetical protein LO 91.6 0.73 2.5E-05 40.2 8.7 34 187-226 23-58 (114)
176 3tyt_A Heterogeneous nuclear r 91.6 0.46 1.6E-05 46.1 8.3 35 187-227 121-157 (205)
177 1jmt_A Splicing factor U2AF 35 91.6 0.45 1.5E-05 40.8 7.3 57 291-347 34-104 (104)
178 3u1l_A PRE-mRNA-splicing facto 91.4 0.51 1.8E-05 47.0 8.4 40 187-228 132-176 (240)
179 1sjq_A Polypyrimidine tract-bi 91.1 0.31 1.1E-05 42.0 5.7 39 186-230 13-51 (105)
180 1qm9_A Polypyrimidine tract-bi 90.7 0.84 2.9E-05 43.4 9.1 35 187-227 118-153 (198)
181 2dit_A HIV TAT specific factor 90.5 0.7 2.4E-05 39.9 7.5 64 293-356 36-109 (112)
182 2ghp_A U4/U6 snRNA-associated 90.1 0.65 2.2E-05 47.4 8.2 36 188-229 209-245 (292)
183 3d2w_A TAR DNA-binding protein 90.1 0.23 7.9E-06 41.2 3.9 38 186-229 8-45 (89)
184 2e5i_A Heterogeneous nuclear r 90.0 1.9 6.5E-05 38.2 10.0 36 315-350 64-103 (124)
185 2adc_A Polypyrimidine tract-bi 90.0 1.3 4.6E-05 43.4 10.0 36 187-228 149-185 (229)
186 2ytc_A PRE-mRNA-splicing facto 89.9 0.46 1.6E-05 38.5 5.6 38 186-229 9-46 (85)
187 1wex_A Hypothetical protein (r 89.2 0.53 1.8E-05 40.4 5.5 38 186-229 12-49 (104)
188 3zzy_A Polypyrimidine tract-bi 89.2 1.2 4.2E-05 39.8 8.1 35 315-349 68-106 (130)
189 2xs2_A Deleted in azoospermia- 88.7 0.48 1.6E-05 40.0 5.0 39 186-230 6-44 (102)
190 2ad9_A Polypyrimidine tract-bi 88.5 0.5 1.7E-05 41.7 5.0 39 186-230 28-66 (119)
191 2cq1_A PTB-like protein L; RRM 88.0 0.56 1.9E-05 40.0 4.8 38 186-229 12-49 (101)
192 3s6e_A RNA-binding protein 39; 87.7 0.66 2.3E-05 40.5 5.2 55 292-346 26-90 (114)
193 3v4m_A Splicing factor U2AF 65 86.4 1.3 4.6E-05 37.8 6.5 55 293-347 25-95 (105)
194 1x4d_A Matrin 3; structural ge 86.2 0.57 1.9E-05 40.0 3.9 37 187-229 13-50 (102)
195 2d9o_A DNAJ (HSP40) homolog, s 83.8 1.5 5.2E-05 37.2 5.5 36 311-346 52-87 (100)
196 2hzc_A Splicing factor U2AF 65 81.2 2 6.9E-05 34.6 5.1 40 187-230 4-52 (87)
197 1x5p_A Negative elongation fac 78.2 2.5 8.6E-05 35.0 4.9 37 312-348 48-86 (97)
198 1fjc_A Nucleolin RBD2, protein 77.8 1.8 6.1E-05 35.8 3.8 37 311-347 51-89 (96)
199 2bz2_A Negative elongation fac 70.6 5.5 0.00019 34.8 5.3 37 312-348 72-110 (121)
200 2diu_A KIAA0430 protein; struc 70.0 2.6 8.9E-05 35.4 2.8 38 187-225 7-44 (96)
201 2j8a_A Histone-lysine N-methyl 68.8 5.7 0.00019 35.4 4.8 36 190-231 3-42 (136)
202 2ytc_A PRE-mRNA-splicing facto 68.6 4.2 0.00014 32.5 3.8 22 312-333 47-68 (85)
203 3d2w_A TAR DNA-binding protein 66.0 4.3 0.00015 33.2 3.4 35 312-346 47-81 (89)
204 1wex_A Hypothetical protein (r 64.9 7.4 0.00025 33.0 4.8 36 312-347 50-89 (104)
205 2cq1_A PTB-like protein L; RRM 64.5 6.7 0.00023 33.1 4.4 35 313-347 51-89 (101)
206 3pgw_A U1-A; protein-RNA compl 64.2 6.5 0.00022 39.5 5.0 36 187-228 205-240 (282)
207 2dhx_A Poly (ADP-ribose) polym 63.4 8.1 0.00028 32.8 4.5 36 188-227 7-45 (104)
208 3ue2_A Poly(U)-binding-splicin 63.3 4.5 0.00016 35.3 3.2 86 188-348 19-108 (118)
209 3ue2_A Poly(U)-binding-splicin 63.0 5.1 0.00017 34.9 3.4 8 224-231 73-80 (118)
210 1x4d_A Matrin 3; structural ge 62.9 6.4 0.00022 33.3 3.9 36 313-348 52-91 (102)
211 1fje_B Nucleolin RBD12, protei 59.9 8.4 0.00029 35.3 4.6 37 310-346 133-171 (175)
212 1sjq_A Polypyrimidine tract-bi 58.4 8.7 0.0003 32.7 4.0 35 313-347 52-90 (105)
213 1fjc_A Nucleolin RBD2, protein 58.1 6 0.00021 32.4 2.9 27 187-217 14-40 (96)
214 2ad9_A Polypyrimidine tract-bi 56.9 7.5 0.00026 34.0 3.4 34 313-346 67-104 (119)
215 2hzc_A Splicing factor U2AF 65 54.8 8.6 0.00029 30.7 3.3 23 312-335 52-74 (87)
216 1l8d_A DNA double-strand break 50.2 60 0.002 27.5 8.2 31 275-305 49-85 (112)
217 3v4m_A Splicing factor U2AF 65 45.9 15 0.00052 31.0 3.5 43 188-232 4-52 (105)
218 2dnr_A Synaptojanin-1; RRM dom 44.5 20 0.00068 29.7 3.8 32 314-346 50-83 (91)
219 1owx_A Lupus LA protein, SS-B, 36.0 22 0.00076 31.1 3.0 41 186-231 15-55 (121)
220 3he5_A Synzip1; heterodimeric 35.7 85 0.0029 21.3 5.1 20 282-301 29-48 (49)
221 2xs2_A Deleted in azoospermia- 35.4 8.2 0.00028 32.0 0.1 20 312-331 49-68 (102)
222 1go4_E MAD1 (mitotic arrest de 35.0 1.2E+02 0.0043 25.3 7.2 71 232-307 19-91 (100)
223 1x5p_A Negative elongation fac 34.4 50 0.0017 26.8 4.9 34 187-228 13-46 (97)
224 1wey_A Calcipressin 1; structu 34.0 47 0.0016 28.1 4.6 43 190-232 6-56 (104)
225 2kn4_A Immunoglobulin G-bindin 32.9 59 0.002 29.0 5.6 61 311-371 11-92 (158)
226 3dxb_A Thioredoxin N-terminall 32.4 34 0.0012 32.8 4.1 37 312-348 174-212 (222)
227 3s6e_A RNA-binding protein 39; 28.9 54 0.0018 28.1 4.3 42 188-231 6-53 (114)
228 3tht_A Alkylated DNA repair pr 28.3 35 0.0012 35.6 3.5 23 314-336 57-79 (345)
229 2dit_A HIV TAT specific factor 27.3 29 0.001 29.3 2.3 39 187-227 13-58 (112)
230 3twe_A Alpha4H; unknown functi 24.9 73 0.0025 19.0 2.9 14 233-246 9-22 (27)
231 2dhx_A Poly (ADP-ribose) polym 24.2 89 0.003 26.4 4.5 44 314-357 48-94 (104)
232 2rdd_B UPF0092 membrane protei 23.2 39 0.0013 22.8 1.8 18 576-593 4-21 (37)
233 2l9w_A U4/U6 snRNA-associated- 22.6 2E+02 0.0068 24.7 6.4 49 180-232 12-63 (117)
234 2k48_A Nucleoprotein; viral pr 21.7 1.3E+02 0.0043 25.3 4.9 23 283-305 81-103 (107)
235 2dnr_A Synaptojanin-1; RRM dom 20.9 86 0.0029 25.8 3.8 44 186-231 4-51 (91)
236 1ufw_A Synaptojanin 2; RNP dom 20.8 49 0.0017 27.5 2.3 19 313-331 58-76 (95)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.36 E-value=0.00067 Score=58.32 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=59.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
.+..+|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|-.
T Consensus 17 ~~gt~lfV~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 56 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMT----QDELRSLFSSI--GEVESAKLIRDKV---------------------------------- 56 (99)
T ss_dssp CCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECSS----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEeEeeecCC----------------------------------
Confidence 4567999999999987 79999999987 6788888765321
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
..+..|.|||+|.+.++|..|.+.++.. +...++|+
T Consensus 57 ------------------------------------------tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 57 ------------------------------------------AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp ------------------------------------------SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 0123479999999999999999887554 23456677
Q ss_pred cC
Q 004876 345 DA 346 (726)
Q Consensus 345 ~A 346 (726)
.|
T Consensus 95 ~A 96 (99)
T 4fxv_A 95 YA 96 (99)
T ss_dssp EC
T ss_pred Ee
Confidence 66
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.0014 Score=55.37 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=61.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
+..+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|-.
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~~~---------------------------------- 42 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNIT----EDMLRGIFEPF--GKIDNIVLMKDSD---------------------------------- 42 (95)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEECCSS----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEeecCC----------------------------------
Confidence 4578999999999876 78999999987 6788877654210
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
..+..+.|||+|++.++|..|.+.++.. +...++|+
T Consensus 43 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 43 ------------------------------------------TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp ------------------------------------------SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 1134579999999999999999977654 34566777
Q ss_pred cCCCCC
Q 004876 345 DAPESR 350 (726)
Q Consensus 345 ~AP~P~ 350 (726)
.|.++.
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 765543
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.24 E-value=0.0007 Score=57.18 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=27.1
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
+.+|.|+|||.+.+ +++|+++|+++. ..|.+|.++
T Consensus 1 S~~i~v~nLp~~~t----e~~l~~~F~~~G-~~v~~v~i~ 35 (91)
T 2lxi_A 1 SNIVMLRMLPQAAT----EDDIRGQLQSHG-VQAREVRLM 35 (91)
T ss_dssp CCEEEEETCCSSCC----HHHHHHHHHHHT-CCCSBCCSS
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHHhC-CEeEEEEEE
Confidence 46899999999987 799999999983 256655433
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.17 E-value=0.0013 Score=57.63 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=62.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
+..+||.|.|||.+.+ ++.|+++|+++ |.|.++.+.+|-.
T Consensus 4 ~p~~~lfV~nL~~~~t----e~~L~~~F~~~--G~i~~v~i~~d~~---------------------------------- 43 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVR----ETFLKDMCRKY--GEVEEVEILLHPR---------------------------------- 43 (110)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEECCC----------------------------------
Confidence 5678999999999886 79999999987 7899988876431
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
..+..|.|||+|++.++|+.|.+.+... ....++|+
T Consensus 44 ------------------------------------------tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 44 ------------------------------------------TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 0124589999999999999999987655 34456777
Q ss_pred cCC
Q 004876 345 DAP 347 (726)
Q Consensus 345 ~AP 347 (726)
.|+
T Consensus 82 ~a~ 84 (110)
T 3s8s_A 82 LDI 84 (110)
T ss_dssp ECS
T ss_pred ECC
Confidence 775
No 5
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.16 E-value=0.0026 Score=54.56 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=31.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~~l~v~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 46 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTN----EQSLEQVFSKY--GQISEVVVVK 46 (102)
T ss_dssp CCCCSEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEEECC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35679999999999886 78999999998 6788777654
No 6
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.12 E-value=0.0021 Score=56.09 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (726)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|-.
T Consensus 23 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNIT----EDMLRGIFEPF--GRIESIQLMMDSE--------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCC----HHHHHHHHTTT--SCEEEEEEEEETT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEcCC---------------------------------
Confidence 35679999999999876 78999999987 6788877664311
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEe
Q 004876 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 343 (726)
Q Consensus 266 ~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 343 (726)
..+..|.|||+|.+.++|..|.+.+... +...++|
T Consensus 64 -------------------------------------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 64 -------------------------------------------TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp -------------------------------------------TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred -------------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 0124579999999999999999877654 3456778
Q ss_pred ecCCCCCC
Q 004876 344 SDAPESRE 351 (726)
Q Consensus 344 ~~AP~P~D 351 (726)
+.|-+..|
T Consensus 101 ~~a~~k~d 108 (108)
T 2jrs_A 101 GHVTERTD 108 (108)
T ss_dssp ECSCSSCC
T ss_pred EEcccCCC
Confidence 88766554
No 7
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.09 E-value=0.0016 Score=54.17 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=59.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|...
T Consensus 2 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~~~~~--------------------------------- 42 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVT----KDHIMEIFSTY--GKIKMIDMPVERMH--------------------------------- 42 (88)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETTE---------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEeCCCC---------------------------------
Confidence 3568999999999886 78999999987 67777665432210
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
..+..|.|||+|.+.++|..|.+.++.. +...++++
T Consensus 43 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 43 ------------------------------------------PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp ------------------------------------------EEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 1125689999999999999999977654 33455666
Q ss_pred cCCCC
Q 004876 345 DAPES 349 (726)
Q Consensus 345 ~AP~P 349 (726)
.|-+|
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 55433
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.09 E-value=0.0028 Score=54.01 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=60.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|-.
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 45 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSS----EEDLEKLFSAY--GPLSELHYPIDSL---------------------------------- 45 (99)
T ss_dssp CSCEEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCCCTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEecCC----------------------------------
Confidence 4679999999999886 68999999987 6777766543220
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
..+..+.|||+|.+.++|..|.+.+... +...++|+
T Consensus 46 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 46 ------------------------------------------TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp ------------------------------------------TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred ------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 1134589999999999999999876543 34456676
Q ss_pred cCCCCC
Q 004876 345 DAPESR 350 (726)
Q Consensus 345 ~AP~P~ 350 (726)
.|-++.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 664443
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.08 E-value=0.0019 Score=53.32 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 5 ~~~~~l~V~nl~~~~~----~~~l~~~f~~~--G~i~~v~i~~ 41 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 41 (85)
T ss_dssp CCSSEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECCE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhcc--CCEEEEEEEE
Confidence 5679999999999876 79999999987 6777776543
No 10
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.07 E-value=0.0011 Score=55.64 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=55.5
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 004876 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (726)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~rP 269 (726)
+||.|.|||.+.+ +++|+++|+++.+..|.++.+.+|-.
T Consensus 2 ~~l~V~nL~~~~t----~~~l~~~F~~~G~~~v~~v~i~~~~~------------------------------------- 40 (90)
T 3p5t_L 2 IALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFENRA------------------------------------- 40 (90)
T ss_dssp --CEEESCCTTCC----HHHHHHHHHTTTCCCCCCEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHHhCCCceEEEEEEecCC-------------------------------------
Confidence 6899999999886 78999999987322687877664321
Q ss_pred cccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeecCC
Q 004876 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (726)
Q Consensus 270 ~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (726)
..+..|.|||+|.+.++|..|.+.+.... ...++|+.|.
T Consensus 41 ---------------------------------------~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 41 ---------------------------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp ---------------------------------------TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred ---------------------------------------CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 11235799999999999999998876653 4456777665
Q ss_pred CCC
Q 004876 348 ESR 350 (726)
Q Consensus 348 ~P~ 350 (726)
+|.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 11
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.06 E-value=0.0019 Score=53.52 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 4 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEIT----TAAIAAAFAPF--GRISDARVVKD 41 (87)
T ss_dssp --CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCceEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEec
Confidence 4679999999999876 78999999987 67888876643
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.0038 Score=53.84 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 52 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVS----EPLLWELFLQA--GPVVNTHMPKDRV--------------------------------- 52 (105)
T ss_dssp CCTTTEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCBCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC---------------------------------
Confidence 35679999999999886 78999999987 6777776543210
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEe
Q 004876 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 343 (726)
Q Consensus 266 ~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 343 (726)
..+..+.|||+|.+.++|..|.+.++.. ....++|
T Consensus 53 -------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 53 -------------------------------------------TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp -------------------------------------------SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred -------------------------------------------CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 1134579999999999999999977654 3445677
Q ss_pred ecCCCC
Q 004876 344 SDAPES 349 (726)
Q Consensus 344 ~~AP~P 349 (726)
+.|-.+
T Consensus 90 ~~a~~~ 95 (105)
T 1x5u_A 90 NKASAH 95 (105)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 766433
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.0043 Score=52.89 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=31.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 7 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 44 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCG----ETELREYFKKF--GVVTEVVMIY 44 (99)
T ss_dssp CSSCCEEEEESCCSSCC----HHHHHHHHSSS--SCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35679999999999876 78999999987 6788877654
No 14
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.04 E-value=0.0047 Score=53.33 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=60.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 10 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 50 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLD----EKDLKPLFEEF--GKIYELTVLKDRF--------------------------------- 50 (106)
T ss_dssp CTTCEEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEECCCCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEecCC---------------------------------
Confidence 35679999999999886 78999999998 6787776543210
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC-----CCCc
Q 004876 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ-----LVDT 340 (726)
Q Consensus 266 ~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~-----~~~~ 340 (726)
..+..+.|||+|.+.++|..|.+.++.. ....
T Consensus 51 -------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 51 -------------------------------------------TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp -------------------------------------------SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred -------------------------------------------CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 1134579999999999999999877654 3356
Q ss_pred eEeecCCC
Q 004876 341 WTVSDAPE 348 (726)
Q Consensus 341 ~~v~~AP~ 348 (726)
+.|+.|-.
T Consensus 88 l~v~~a~~ 95 (106)
T 2dgp_A 88 IQVKPADS 95 (106)
T ss_dssp CEEEECCC
T ss_pred EEEEECCc
Confidence 67777643
No 15
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.03 E-value=0.0028 Score=53.75 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=58.8
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 004876 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 268 (726)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~r 268 (726)
+++|.|.|||.+.. +++|+++|+++ |.|.++.+.+|-.
T Consensus 2 ~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 39 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT----EEQILDLCSNV--GPVINLKMMFDPQ------------------------------------ 39 (96)
T ss_dssp CSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCBCTT------------------------------------
T ss_pred CcEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEeCCC------------------------------------
Confidence 58999999999886 78999999987 6677776543210
Q ss_pred CcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEeecC
Q 004876 269 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (726)
Q Consensus 269 P~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (726)
..+..|.|||+|.+.++|..|.+.+... +...++|+.|
T Consensus 40 ----------------------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 40 ----------------------------------------TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp ----------------------------------------TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 1134589999999999999999877654 3455677776
Q ss_pred CCC
Q 004876 347 PES 349 (726)
Q Consensus 347 P~P 349 (726)
-++
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 443
No 16
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.0027 Score=53.73 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=57.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEE-EEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS-MVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v-~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++ .+.+|-.
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~~i~~~~~--------------------------------- 43 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEID----EKLLYDTFSAF--GVILQTPKIMRDPD--------------------------------- 43 (96)
T ss_dssp SCCCEEEEECCCTTCC----HHHHHHHHHTT--SCBSSCCEECCCTT---------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEEcCC---------------------------------
Confidence 4578999999999876 78999999987 556665 4443210
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEe
Q 004876 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 343 (726)
Q Consensus 266 ~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 343 (726)
..+..+.|||+|.+.++|..|.+.++.. +...++|
T Consensus 44 -------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 44 -------------------------------------------TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp -------------------------------------------TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred -------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 1134589999999999999999976654 3445666
Q ss_pred ecCC
Q 004876 344 SDAP 347 (726)
Q Consensus 344 ~~AP 347 (726)
+.|-
T Consensus 81 ~~a~ 84 (96)
T 1x5t_A 81 SYAF 84 (96)
T ss_dssp EESC
T ss_pred EEec
Confidence 6653
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.99 E-value=0.0035 Score=55.10 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=31.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
+..++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 23 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFG----DQDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp STTCCEEEESCCSSCC----HHHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 5668999999999886 78999999988 6788887664
No 18
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.99 E-value=0.0042 Score=57.84 Aligned_cols=101 Identities=23% Similarity=0.266 Sum_probs=71.3
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
+++||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 1 s~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~~~~~~~----------------------------------- 39 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMT----QEEFRSLFGSI--GEIESCKLVRDKI----------------------------------- 39 (167)
T ss_dssp CCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECTT-----------------------------------
T ss_pred CcceEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCCC-----------------------------------
Confidence 468999999999886 78999999987 6788877654221
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeec
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (726)
..+..|.|||+|.+.++|..|.+.+.... ...+.+..
T Consensus 40 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 40 -----------------------------------------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp -----------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 11245799999999999999998765542 33455555
Q ss_pred CCCC------CCeeeCCcCCchHHHHHHHHH
Q 004876 346 APES------RELIWNNLNIKFFQRQIRQYV 370 (726)
Q Consensus 346 AP~P------~DIiW~NL~~~~~~r~~R~~~ 370 (726)
+.++ ..+.=.||..+..+..++..+
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHHH
Confidence 5433 347778887766555555543
No 19
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.003 Score=53.17 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
.++.++|.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 50 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLT----NNDLYRIFSKY--GKVVKVTIMK 50 (94)
T ss_dssp CCCTTSEEEESCCTTSC----HHHHHHHTTTT--SCEEEEEECC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 36679999999999887 68899999987 5687776654
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.95 E-value=0.0034 Score=51.42 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=57.8
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 004876 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (726)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~rP 269 (726)
+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~~~~------------------------------------- 38 (83)
T 3md1_A 2 FNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWDMQ------------------------------------- 38 (83)
T ss_dssp EEEEEECCCTTCC----HHHHHHHHTTS--TTEEEEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEcCC-------------------------------------
Confidence 7999999999886 78999999987 6788887765320
Q ss_pred cccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCC
Q 004876 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (726)
Q Consensus 270 ~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (726)
..+..|.|||+|.+.++|..|.+.+... +...++++.|-
T Consensus 39 ---------------------------------------~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 39 ---------------------------------------TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp ---------------------------------------TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ---------------------------------------CCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 1124579999999999999999977654 33456676663
No 21
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.95 E-value=0.0015 Score=55.69 Aligned_cols=39 Identities=3% Similarity=0.056 Sum_probs=29.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....||+|+|||.+.+ +++|+++|+++.+-.+.+|.+++
T Consensus 7 ~~m~tlfV~nL~~~~t----ee~L~~~F~~~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTV----VDSIMTALSPYASLAVNNIRLIK 45 (95)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHSTTTCCCCGGGEECCC
T ss_pred CccCEEEEeCCCCcCC----HHHHHHHHHhhCCccEEEEEEEe
Confidence 4568999999999887 79999999987433555665443
No 22
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.92 E-value=0.0037 Score=52.67 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=31.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 49 (95)
T ss_dssp CCGGGCEEEESCCSSCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 35679999999999876 78999999987 6788887664
No 23
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.92 E-value=0.0038 Score=52.33 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=30.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~~~i~~ 42 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFT----WKMLKDKFNEC--GHVLYADIKM 42 (92)
T ss_dssp SSSCCEEEECSCCTTCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 35679999999999876 78999999987 6777776553
No 24
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.89 E-value=0.0059 Score=53.56 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=32.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEIT----TEDIKAAFAPF--GRISDARVVKD 50 (115)
T ss_dssp STTCEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEc
Confidence 35679999999999886 78999999988 67888877653
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0069 Score=52.29 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=60.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 52 (107)
T 2cph_A 12 KQTTSKILVRNIPFQAN----QREIRELFSTF--GELKTVRLPKKMT--------------------------------- 52 (107)
T ss_dssp SSCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCCCCS---------------------------------
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHcc--CCeEEEEEecCCC---------------------------------
Confidence 35679999999999886 78999999987 6787776554310
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhh-ccC--CCCceE
Q 004876 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSL-HAQ--LVDTWT 342 (726)
Q Consensus 266 ~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~-~~~--~~~~~~ 342 (726)
...+..+.|||+|.+.++|..|.+.+ ... ....+.
T Consensus 53 ------------------------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 53 ------------------------------------------GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp ------------------------------------------SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred ------------------------------------------CCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 01235689999999999999999887 443 344667
Q ss_pred eecCCCC
Q 004876 343 VSDAPES 349 (726)
Q Consensus 343 v~~AP~P 349 (726)
|+.|-..
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 7766443
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.0055 Score=52.31 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=59.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|-.
T Consensus 15 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 54 (100)
T 2do4_A 15 LEKHKLFISGLPFSCT----KEELEEICKAH--GTVKDLRLVTNRA---------------------------------- 54 (100)
T ss_dssp CCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEECCC----------------------------------
Confidence 5678999999999886 78999999987 6788877654210
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
.+..+.|||+|++.++|..|.+.+... +...++|+
T Consensus 55 -------------------------------------------g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 55 -------------------------------------------GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp -------------------------------------------SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred -------------------------------------------CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 123479999999999999999876543 34556777
Q ss_pred cCCC
Q 004876 345 DAPE 348 (726)
Q Consensus 345 ~AP~ 348 (726)
.|-+
T Consensus 92 ~a~~ 95 (100)
T 2do4_A 92 ISNS 95 (100)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 6643
No 27
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.84 E-value=0.0099 Score=50.97 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=31.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVT----EVLILQLFSQI--GPCKSCKMIT 49 (103)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEEC
T ss_pred CCCCEEEEeCCCccCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 4679999999999886 78999999998 6788887664
No 28
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.84 E-value=0.0045 Score=51.44 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=31.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 5 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT----AEELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHGGG--CCEEEEEEEES
T ss_pred cCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEec
Confidence 468999999999886 78999999987 67888877653
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.83 E-value=0.0042 Score=54.78 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 4 ~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 4 GSGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCEEEECCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 356899999999886 79999999998 6788887765
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.01 Score=50.92 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIF 49 (103)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHGGGT--SCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35679999999999886 78999999987 6788877654
No 31
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.83 E-value=0.0067 Score=51.61 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=31.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCce-EEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY-RSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~-~v~i~~d 230 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|. ++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~v~i~~~ 45 (99)
T 2div_A 6 SGMAASLWMGDLEPYMD----ENFISRAFATM--GETVMSVKIIRN 45 (99)
T ss_dssp CSSSSEEEECSCCTTCC----HHHHHHHHHHT--TCCCCEEEEEEC
T ss_pred CCCccEEEEeCCCCCCC----HHHHHHHHHHh--CCcceEEEEeec
Confidence 45679999999999876 79999999997 6677 8777653
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.80 E-value=0.0064 Score=52.42 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=31.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 21 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~~ 58 (106)
T 1p27_B 21 VEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNLD 58 (106)
T ss_dssp TTBEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCeEEEEEEec
Confidence 4568999999999886 78999999988 67888877643
No 33
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.79 E-value=0.0057 Score=57.12 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=71.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
+.+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 40 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT----DRELYALFRAI--GPINTCRIMRDYK----------------------------------- 40 (168)
T ss_dssp CCSEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETT-----------------------------------
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEeCC-----------------------------------
Confidence 578999999999886 78999999987 5677776543210
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEeec
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 345 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 345 (726)
..+..|.|||+|.+.++|..|.+.+... ....+.+..
T Consensus 41 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 41 -----------------------------------------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp -----------------------------------------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 1134589999999999999999876544 233445554
Q ss_pred CC------CCCCeeeCCcCCchHHHHHHHHH
Q 004876 346 AP------ESRELIWNNLNIKFFQRQIRQYV 370 (726)
Q Consensus 346 AP------~P~DIiW~NL~~~~~~r~~R~~~ 370 (726)
|. .+.-|.-.||..+..+..++..+
T Consensus 80 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred cCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 42 34557888888776665555543
No 34
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.78 E-value=0.0059 Score=52.42 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=31.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTT----EQDLKEYFSTF--GEVLMVQVKKD 50 (103)
T ss_dssp CCCCCEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 4578999999999886 78999999988 67888877653
No 35
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.77 E-value=0.0084 Score=52.91 Aligned_cols=37 Identities=5% Similarity=0.138 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 41 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETN----EKMLKAVFGKH--GPISEVLLIK 41 (116)
T ss_dssp CSCCEEEEECCTTTCC----HHHHHHHHHTS--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 3578999999999876 78999999987 6688877654
No 36
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.77 E-value=0.0053 Score=52.72 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=29.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 11 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 46 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTS----PDSLRRVFEKY--GRVGDVYIP 46 (103)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECC
T ss_pred CCCeEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 4579999999999886 78999999987 667777654
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.0083 Score=52.15 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSE----EEALGEVLQQF--GDLKYVRVVL 49 (111)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999876 78999999987 6787776544
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.74 E-value=0.0089 Score=51.42 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=30.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQS----EEDVLRLFQPF--GVIDECTVLR 49 (105)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 5679999999999886 78999999987 5688776654
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.73 E-value=0.0044 Score=53.11 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=30.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 9 ~~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 45 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 45 (102)
T ss_dssp CCCCSCEEEESCCSSCC----HHHHHHHHTTT--SCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcc--CCEEEEEEE
Confidence 35679999999999876 78999999986 667776554
No 40
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.72 E-value=0.0064 Score=51.25 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~~l~v~nlp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 50 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVR----EEILYELFLQA--GPLTKVTICK 50 (95)
T ss_dssp TTGGGEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 35679999999999876 78999999988 6788877664
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.71 E-value=0.0074 Score=52.47 Aligned_cols=37 Identities=5% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 23 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 59 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLN 59 (110)
T ss_dssp BTTBEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 35678999999999886 68999999988 677777654
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.70 E-value=0.0078 Score=51.76 Aligned_cols=37 Identities=11% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....+||.|.|||.+.+ +++|+++|+++ | |.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 48 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 48 (104)
T ss_dssp SSSCEEEEEESCCSSCC----HHHHHHHTTTS--C-EEEEECCB
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHHC--C-ceEEEEec
Confidence 35679999999999886 78999999987 5 87776543
No 43
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.69 E-value=0.0042 Score=53.41 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=60.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|-.
T Consensus 6 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~~~~---------------------------------- 45 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEAT----EEQLKDIFSEV--GPVVSFRLVYDRE---------------------------------- 45 (104)
T ss_dssp HHHSCEEEESCCTTSC----HHHHHHHHHTT--SCCSEEEEEEETT----------------------------------
T ss_pred CCccEEEEeCCCCcCC----HHHHHHHHHhc--CCeeEEEEEeCCC----------------------------------
Confidence 3568999999999886 78999999987 6787877664320
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
..+..|.|||+|.+.++|..|.+.+... ....++|+
T Consensus 46 ------------------------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 46 ------------------------------------------TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp ------------------------------------------TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 0123479999999999999999877654 34456777
Q ss_pred cCCCC
Q 004876 345 DAPES 349 (726)
Q Consensus 345 ~AP~P 349 (726)
.|-.+
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 66443
No 44
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.68 E-value=0.0088 Score=52.58 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=31.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 51 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTT----DASLRKYFEGF--GDIEEAVVIT 51 (116)
T ss_dssp SCSSSEEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEESC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeeEEEEEE
Confidence 35679999999999886 78999999987 6788777654
No 45
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.66 E-value=0.0058 Score=52.43 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=31.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 49 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTR----ETDLQELFRPF--GSISRIYLAK 49 (103)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHTTSTTT--CCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEee
Confidence 35679999999999876 78999999987 6788877664
No 46
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.65 E-value=0.005 Score=50.99 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=32.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTS----KKDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp CSCTTEEEEECCCTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEeec
Confidence 35679999999999886 79999999887 67888887754
No 47
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.63 E-value=0.008 Score=55.94 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=60.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...+||.|.|||.+++ +++|+++|+++ |.|.+|.+.+|-.
T Consensus 37 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTT----EEQIYELFSKS--GDIKKIIMGLDKM---------------------------------- 76 (156)
T ss_dssp TTCCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC----------------------------------
Confidence 4679999999999876 78999999988 6788887765321
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
..+..+.|||+|.+.++|..|.+.+... +...++|+
T Consensus 77 ------------------------------------------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 77 ------------------------------------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 0123479999999999999999976554 33456676
Q ss_pred cCCC
Q 004876 345 DAPE 348 (726)
Q Consensus 345 ~AP~ 348 (726)
.|.+
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 6643
No 48
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.62 E-value=0.015 Score=48.44 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~~~ 41 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACT----SQELRSLFERR--GRVIECDV 41 (90)
T ss_dssp SCCSCCEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHcC--CCEEEEEE
Confidence 45679999999999876 78999999988 56776654
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.60 E-value=0.0074 Score=51.21 Aligned_cols=39 Identities=8% Similarity=0.213 Sum_probs=32.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCc
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~ 41 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTT----EETLKGVFSKV--GAIKSCTISKKK 41 (98)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecC
Confidence 4578999999999876 78999999987 678888776543
No 50
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.60 E-value=0.0098 Score=50.62 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=27.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceE
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~ 224 (726)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 42 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 42 (99)
T ss_dssp CCCCSEEEEECCCSSCC----HHHHHHHHTTT--SCBCE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCEee
Confidence 35679999999999886 78999999987 56655
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.57 E-value=0.01 Score=52.94 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 19 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 56 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNL 56 (126)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35678999999999876 78999999987 6777776544
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.57 E-value=0.0096 Score=51.04 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGID----DERLRKAFSPF--GTITSAKVMM 49 (103)
T ss_dssp CSSCCCEEEECCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 35679999999999887 68899999986 5688777654
No 53
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.54 E-value=0.0091 Score=54.21 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 61 ~~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~ 97 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 97 (140)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECCC
T ss_pred CCCcEEEEEeCCCCCC----HHHHHHHHHhc--CCEEEEEEee
Confidence 4578999999999876 78999999987 6777776543
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.014 Score=50.00 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=31.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....++|.|.|||.+.+ +++|+++|++.+ |.|.++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~~-G~v~~v~i~~ 44 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVD----DGMLYEFFVKVY-PSCRGGKVVL 44 (104)
T ss_dssp SSCCCCEEEECCCTTCC----HHHHHHHHHHHC-TTEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHHhC-CCeEEEEEEE
Confidence 35679999999999876 789999999833 6788887664
No 55
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.54 E-value=0.011 Score=50.68 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=31.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
....+||.|.|||.+++ +++|+++|+++ + |.++.+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g-i~~v~i~~~ 49 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTV----QGDIDAIFKDL--S-IRSVRLVRD 49 (103)
T ss_dssp SSSCEEEEEESCCTTCC----HHHHHHHTTTS--C-EEEEEEEEC
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhC--C-ceEEEEeec
Confidence 35679999999999886 78999999987 4 888877653
No 56
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.50 E-value=0.0045 Score=53.04 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=27.2
Q ss_pred CCceEEEEecCHHHHHHHHhhhccCC--C-CceEeecC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQL--V-DTWTVSDA 346 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~-~~~~v~~A 346 (726)
..|.|||+|.+..+|..|.+.+.... . ..++|..|
T Consensus 53 ~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 53 TKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 45899999999999999998876543 3 45666665
No 57
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.50 E-value=0.0044 Score=51.70 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.5
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
+||.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 2 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 35 (90)
T 2ki2_A 2 RNIYVGNLVYSAT----SEQVKELFSQF--GKVFNVKLIY 35 (90)
T ss_dssp EEEEEEEECTTSS----HHHHTTTHHHH--TCCSEEEECC
T ss_pred cEEEECCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 6899999999887 68899999998 6788776654
No 58
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.49 E-value=0.011 Score=51.06 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=31.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....++|.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 26 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 63 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVHY 63 (107)
T ss_dssp CCCSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 45679999999999886 78999999987 6788877664
No 59
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.49 E-value=0.0067 Score=53.48 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=30.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 38 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 74 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFT----DTDLASTFLPF--GNVISAKVFI 74 (118)
T ss_dssp CCSEEEEEECSCTTCC----HHHHHHHTTTS--CEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 5679999999999876 78999999987 6777776553
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.49 E-value=0.0036 Score=53.22 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCCCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 350 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 350 (726)
..+.|||+|.+.++|..|.+.++.. +...++|+.|-.|.
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 4589999999999999999877654 34567777776553
No 61
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.47 E-value=0.021 Score=48.25 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=29.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHH----HHHHHhCCCCceEEEEe
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~----~~f~~~~p~~v~~v~i~ 228 (726)
....++|.|.|||.+.+ +++|+ ++|+++ |.|.++.+.
T Consensus 6 ~~~~~~l~V~nL~~~~~----~~~l~~~l~~~F~~~--G~v~~v~i~ 46 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLS----RKELQQLLQEAFARH--GKVKSVELS 46 (96)
T ss_dssp CSSCEEEEEESCCTTSC----HHHHHHHHHHHHHHH--SCEEEEEEC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHHhcccc--CcEEEEEEE
Confidence 45678999999999887 67787 899887 678777654
No 62
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.46 E-value=0.01 Score=51.62 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=30.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 26 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~ 62 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEII 62 (109)
T ss_dssp TTCCCEEEEESCCTTCC----HHHHHHHGGGT--CCCSCEEEC
T ss_pred CCCCCEEEEECCCCcCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 35679999999999876 78999999987 677776654
No 63
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.45 E-value=0.0095 Score=53.61 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=33.8
Q ss_pred CceEEEEecCHHHHHHHHhhhccCC--CCceEeecCCCCCCeeeC
Q 004876 313 LGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWN 355 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~ 355 (726)
.|.|||+|.+.++|..|.+.+.... ...++|..|-.++|...+
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 4789999999999999998876543 446778888777776654
No 64
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.45 E-value=0.019 Score=48.01 Aligned_cols=36 Identities=6% Similarity=0.103 Sum_probs=29.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~v~~ 42 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCT----NQELRAKFEEY--GPVIECDI 42 (92)
T ss_dssp CCSSEEEEEESCCSSCC----HHHHHHHHHTT--SCCCEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 45679999999999886 78999999987 56766654
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.45 E-value=0.011 Score=53.28 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=31.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 44 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~ 80 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 80 (129)
T ss_dssp CCSSCBCEETCTTSCC----HHHHHHHHTTT--SCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999886 78999999987 6788887664
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.45 E-value=0.014 Score=50.90 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=27.3
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccC--CCCceEeecC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (726)
+..+.|||+|.+.++|..|.+.+... +...++|+.|
T Consensus 63 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 63 KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp SBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred CeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 45689999999999999999876554 2345566655
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.44 E-value=0.023 Score=49.19 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=29.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 54 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIR----TKDIEDVFYKY--GAIRDIDL 54 (109)
T ss_dssp CCSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 4578999999999886 78999999997 56776654
No 68
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.43 E-value=0.019 Score=51.06 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=30.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 33 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 69 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDY 69 (124)
T ss_dssp SSCEEEEEESCCSSCC----HHHHHHHHHTT--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 4568999999999876 78999999987 6787777653
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.42 E-value=0.012 Score=49.23 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=30.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...++|.|.|||.+.+ +++|+++|+++ .|.++.+.+|
T Consensus 8 ~~~~~l~v~nLp~~~t----~~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVT----EKNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCEEEEECCCSSCC----HHHHHHHHTTS---CCSEEEEEEC
T ss_pred CCccEEEEECCCCCCC----HHHHHHHHhhC---CceEEEEEEC
Confidence 5679999999999886 78999999976 4777766643
No 70
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.42 E-value=0.024 Score=47.19 Aligned_cols=35 Identities=11% Similarity=0.315 Sum_probs=28.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~ 40 (90)
T 2dnq_A 6 SGMVKLFIGNLPREAT----EQEIRSLFEQY--GKVLECDI 40 (90)
T ss_dssp SCCEEEEEESCCSSCC----HHHHHHHHHTS--SCEEEEEE
T ss_pred CCCeEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEE
Confidence 5679999999999886 68899999887 56666543
No 71
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.41 E-value=0.0059 Score=49.16 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.5
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
.||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 1 ~~l~v~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 34 (77)
T 1uaw_A 1 CKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMR 34 (77)
T ss_dssp CCEEEESCCSSCC----SHHHHHHHTTT--SCCCCEEEEC
T ss_pred CEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEec
Confidence 4799999999887 58899999987 5677776654
No 72
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.41 E-value=0.015 Score=50.89 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=66.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~~----------------------------------- 44 (115)
T 3lqv_A 6 EVNRILYIRNLPYKIT----AEEMYDIFGKY--GPIRQIRVGNTP----------------------------------- 44 (115)
T ss_dssp TCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEECST-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeCC-----------------------------------
Confidence 4578999999999886 68899999987 678777665310
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
...|.|||+|.+..+|..|.+.++.. ....+.+.
T Consensus 45 --------------------------------------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 45 --------------------------------------------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp --------------------------------------------TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred --------------------------------------------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 11478999999999999999987654 34456777
Q ss_pred cCCCCCCeeeCCcCCchHHHHHHH
Q 004876 345 DAPESRELIWNNLNIKFFQRQIRQ 368 (726)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~ 368 (726)
.|-++.+- +|+.....+..++.
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~ 102 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKL 102 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHH
T ss_pred EecCChhh--hhhhHhHhHHHHHH
Confidence 76443322 55554444444443
No 73
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.39 E-value=0.015 Score=54.57 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=71.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
.++||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|...
T Consensus 2 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~~---------------------------------- 41 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWS----EKDLRELFEQY--GAVYEINVLRDRSQ---------------------------------- 41 (175)
T ss_dssp CCEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEECSS----------------------------------
T ss_pred CceEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEecCCC----------------------------------
Confidence 468999999999886 78999999987 67888877654210
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC-----CCceE
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL-----VDTWT 342 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~-----~~~~~ 342 (726)
| ..+..|.|||+|.+.++|..|.+.+.... ...+.
T Consensus 42 ------------~----------------------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 42 ------------N----------------------------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp ------------S----------------------------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred ------------C----------------------------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 0 01356899999999999999998765432 22333
Q ss_pred eecC-------CCCCCeeeCCcCCchHHHHHHHHH
Q 004876 343 VSDA-------PESRELIWNNLNIKFFQRQIRQYV 370 (726)
Q Consensus 343 v~~A-------P~P~DIiW~NL~~~~~~r~~R~~~ 370 (726)
+..+ ++...|.=.||..+..+..++..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMF 116 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence 3332 234557778888776666666543
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.39 E-value=0.01 Score=51.17 Aligned_cols=37 Identities=5% Similarity=0.190 Sum_probs=31.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+
T Consensus 9 ~~~~~lfV~~Lp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 45 (103)
T 1s79_A 9 VKNRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRR 45 (103)
T ss_dssp SGGGCEEEECCCTTCC----HHHHHHHHHTS--SCEEEEEEEC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhhc--CCEEEEEEEE
Confidence 5679999999999876 78999999987 6788887764
No 75
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.37 E-value=0.0096 Score=47.69 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=24.9
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
+|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 1 ~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i 31 (75)
T 2mss_A 1 KIFVGGLSVNTT----VEDVKHYFEQF--GKVDDAML 31 (75)
T ss_dssp CEEEECCCSSCC----HHHHHHHHHTT--SCCSEECC
T ss_pred CEEEecCCCCCC----HHHHHHHHHhc--CCEEEEEE
Confidence 478999999886 78999999987 56766643
No 76
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.37 E-value=0.023 Score=49.20 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=30.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
+..+||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 23 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~ 58 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLT----DQLMRQTFSPF--GQIMEIRVF 58 (109)
T ss_dssp SSCCEEEEECCSSCCC----HHHHHHHHHHH--SCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 5679999999999886 78999999988 567777654
No 77
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.37 E-value=0.014 Score=52.97 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=31.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 40 ~~~~~l~V~nLp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 76 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVD----EVQLRQLFERY--GPIESVKIVC 76 (139)
T ss_dssp TTTSEEEEESCSTTCC----HHHHHHHHHHH--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 3468999999999886 78999999998 6788887664
No 78
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.33 E-value=0.007 Score=48.46 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.3
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 1 ~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i 31 (75)
T 1iqt_A 1 KIFVGGLSPDTP----EEKIREYFGGF--GEVESIEL 31 (75)
T ss_dssp CEEESCCCSSCC----HHHHHHHHHHH--SCCSEECC
T ss_pred CEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 689999999886 78999999998 56766644
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.32 E-value=0.005 Score=51.90 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=26.0
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCCceEeecC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (726)
..+.|||+|.+.++|..|.+.++.. +...++|+.|
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4589999999999999999876554 2334555554
No 80
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.31 E-value=0.012 Score=50.63 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=26.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~ 224 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~ 44 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCS----KEEIVQFFSGL--EIVPN 44 (104)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHTTTC--CEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCcce
Confidence 5679999999999887 78999999876 55554
No 81
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.31 E-value=0.024 Score=49.00 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=29.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCC-ceEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDT-FYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~-v~~v~i~ 228 (726)
...+||.|.|||.+.+ +++|+++|+++ |. |.++.+.
T Consensus 6 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~~v~~v~i~ 42 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKK----REEILEEIAKV--TEGVLDVIVY 42 (109)
T ss_dssp CCSEEEEEECCCTTSC----HHHHHHHHHHH--STTEEEEECC
T ss_pred cCCCEEEEeCCCCcCC----HHHHHHHHHHh--cCCceEEEEE
Confidence 4679999999999886 78999999998 44 7776543
No 82
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.30 E-value=0.0083 Score=53.66 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=30.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCC--CCceEEEEecC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP--DTFYRSMVVTN 230 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p--~~v~~v~i~~d 230 (726)
..++|.|.|||.+.+ +++|+++|+++.+ +.+.+|.+++|
T Consensus 22 ~~~~v~V~nLp~~~t----e~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 22 NQVIVRMRGLPFTAT----AEEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp SCCEEEECSCCTTCC----HHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhhCCccCCcceEEEEEC
Confidence 478999999999887 7999999998743 34567776653
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.30 E-value=0.014 Score=50.57 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=28.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~i 47 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADV 47 (108)
T ss_dssp SCCCEEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEE
Confidence 4578999999999886 79999999987 56766654
No 84
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.29 E-value=0.019 Score=56.30 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=70.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
..+||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|..
T Consensus 14 p~~tlfVgnLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~----------------------------------- 52 (213)
T 4f02_A 14 PMASLYVGDLHPDVT----EAMLYEKFSPA--GPILSIRVCRDMI----------------------------------- 52 (213)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT-----------------------------------
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEecccC-----------------------------------
Confidence 458999999999887 79999999998 6798888765321
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeec
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (726)
..+..|.|||+|.+.++|..|.+.+.... ...+++..
T Consensus 53 -----------------------------------------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 53 -----------------------------------------TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp -----------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 01245799999999999999998765432 22334444
Q ss_pred CCC--------CCCeeeCCcCCchHHHHHHHHH
Q 004876 346 APE--------SRELIWNNLNIKFFQRQIRQYV 370 (726)
Q Consensus 346 AP~--------P~DIiW~NL~~~~~~r~~R~~~ 370 (726)
+.. ...|.=.||..+..+..++.++
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 124 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 124 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHH
T ss_pred ccccccccccccccceECCcccccHHHHHHHHH
Confidence 322 2346677777766665555543
No 85
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.29 E-value=0.0084 Score=49.36 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=30.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~ 39 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTT----DQDLVKLCQPY--GKIVSTKAIL 39 (85)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHTTSTTT--SCEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999887 68899999987 6788777654
No 86
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.02 Score=49.90 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=30.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~ 49 (114)
T 2do0_A 13 RLGSTVFVANLDYKVG----WKKLKEVFSMA--GVVVRADILE 49 (114)
T ss_dssp CCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 4578999999999876 78999999987 6787776654
No 87
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.26 E-value=0.032 Score=47.31 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEE
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v 225 (726)
....+||.|.|||.+.+ +++|+++|+++.+|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~g~g~v~~~ 47 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTS----EEMIEKEFNNIKPGAVERV 47 (99)
T ss_dssp SSCCCEEEEESCCTTCC----HHHHHHHHHTTSTTCEEEE
T ss_pred cCCcCEEEEeCCCCCCC----HHHHHHHHHhcCCcceEEE
Confidence 35679999999999876 7899999998866666554
No 88
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.25 E-value=0.029 Score=48.00 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 9 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~ 42 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVT----EEILEKAFSQF--GKLERVK 42 (103)
T ss_dssp CCCCCEEEECCCTTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 4568999999999876 78999999988 5666654
No 89
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.25 E-value=0.021 Score=48.53 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=28.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~ 47 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDIT----EEEMRKLFEKY--GKAGEVFI 47 (99)
T ss_dssp CCCTTEEEEESCCTTCC----HHHHHHHTSTT--CCCSEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhhc--CCeEEEEE
Confidence 35678999999999876 68899999887 56666654
No 90
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.24 E-value=0.016 Score=50.49 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=29.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 23 ~~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 59 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMR 59 (109)
T ss_dssp ---CCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHcc--CCeEEEEEEE
Confidence 4578999999999887 78999999987 6788887664
No 91
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.025 Score=52.43 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=28.6
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
|||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 1 R~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~ 33 (166)
T 3md3_A 1 RVLYVGNLDKAIT----EDILKQYFQVG--GPIANIKIM 33 (166)
T ss_dssp CEEEEEEEETTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CEEEECCCCCcCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 6899999999886 78999999988 678888766
No 92
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.19 E-value=0.011 Score=50.89 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=32.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTT----QETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSSEECCBSCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 35679999999999876 78999999987 67888877653
No 93
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.17 E-value=0.02 Score=49.66 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=27.6
Q ss_pred CccceEEEecCCCC-CCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 187 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~-~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
...+||.|.|||.+ .+ +++|+++|+++ |.|.++.+
T Consensus 25 ~~~~~l~V~nl~~~~~t----~~~l~~~F~~~--G~v~~v~i 60 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVK----KSDVETIFSKY--GRVAGCSV 60 (110)
T ss_dssp TCSSEEEECSCCCSSCC----HHHHHHHHGGG--SCCSEEEE
T ss_pred CCCcEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEE
Confidence 34589999999998 65 78999999987 56666543
No 94
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.15 E-value=0.031 Score=54.41 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=30.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
..+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 27 ~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 62 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG----EDTIRQAFAPF--GPIKSIDMSW 62 (216)
T ss_dssp HHTEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEECC
T ss_pred cCCEEEEECCCCCCC----HHHHHHHHHhC--CCEEEEEEee
Confidence 468999999999986 79999999988 6788877654
No 95
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.14 E-value=0.016 Score=51.47 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=30.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 35 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 70 (124)
T 2jwn_A 35 DKRSVYVGNVDYGST----AQDLEAHFSSC--GSINRITILC 70 (124)
T ss_dssp HHTEEEEEEECTTCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 468999999999876 78999999987 6788887765
No 96
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.12 E-value=0.047 Score=45.85 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v 225 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~ 45 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQ----WEVLDSLLVQY--GVVESC 45 (96)
T ss_dssp CSCCCEEEEEECSSSC----HHHHHHHHHHH--SCEEEE
T ss_pred CCCCEEEEEcCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 3578999999999887 68999999988 567666
No 97
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.11 E-value=0.02 Score=50.21 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=30.5
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 26 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 26 QFRKLFIGGLSFETT----EESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HHTEEEEECCTTCCC----HHHHHHHHTSS--CCCSEEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 358999999999886 78999999887 67888876653
No 98
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.08 E-value=0.017 Score=52.49 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=29.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 45 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 81 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 81 (135)
T ss_dssp GGCCCEEEECCCSSCH----HHHHHHHHGGG--SCCSEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 3568999999999876 78999999987 5677776543
No 99
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.08 E-value=0.029 Score=52.09 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=30.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 68 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~v~~~~i~~ 104 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 104 (158)
T ss_dssp CBCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEee
Confidence 4578999999999886 78999999988 6787776543
No 100
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.013 Score=51.51 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=26.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCce
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY 223 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~ 223 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.
T Consensus 6 ~~~~~lfVgnLp~~~t----e~~L~~~F~~~--G~i~ 36 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDID----EDEITASFRRF--GPLV 36 (114)
T ss_dssp SCCCCEEEECCCTTCC----HHHHHHHTTTT--CCCC
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCEE
Confidence 4578999999999887 78999999987 5555
No 101
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.06 E-value=0.02 Score=48.25 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=30.4
Q ss_pred CceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCCCCCe
Q 004876 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESREL 352 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DI 352 (726)
.|.|||+|.+.++|..|.+.++.. ....++++.|-.+.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 378999999999999999877654 3456677777655543
No 102
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.04 E-value=0.022 Score=54.40 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=61.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
....||.|.|||.++. +++|+++|+++ |.|.++.+.+|-
T Consensus 86 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~----------------------------------- 124 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDYDR----------------------------------- 124 (177)
T ss_dssp TTCEEEEEECCCSCCC----HHHHHHHHHHT--SCCSEEEECCCT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECC-----------------------------------
Confidence 4578999999999886 78999999987 677777765421
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
..+..+.|||+|.+.++|..|.+.+... +...+.|+
T Consensus 125 ------------------------------------------~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 125 ------------------------------------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp ------------------------------------------TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred ------------------------------------------CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 0124579999999999999999876654 33456777
Q ss_pred cCCCCCCe
Q 004876 345 DAPESREL 352 (726)
Q Consensus 345 ~AP~P~DI 352 (726)
.|..+...
T Consensus 163 ~a~~~~~~ 170 (177)
T 2f3j_A 163 LVASQIDL 170 (177)
T ss_dssp EESSGGGG
T ss_pred EecCCCCC
Confidence 76554433
No 103
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.03 E-value=0.027 Score=49.34 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=27.3
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (726)
..|.|||+|++.++|..|.+.+... +...++|+.|.
T Consensus 66 ~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 66 FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3479999999999999999876543 34456677663
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.01 E-value=0.039 Score=47.27 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=31.2
Q ss_pred CCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 185 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
..+.+++|.|+|+|.+.+ +++|++.|+++ |.|.++.+.
T Consensus 17 ~~~ps~~l~V~NLp~~~t----e~~L~~lF~~f--G~V~~v~i~ 54 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVV----EADLVEALQEF--GPISYVVVM 54 (100)
T ss_dssp CCCCCSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEE
Confidence 346789999999999876 78999999987 678777653
No 105
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.01 E-value=0.022 Score=53.09 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=58.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
..++|.|.|||.+.+ +++|+++|+++.+..|.++.+++|-.
T Consensus 54 ~~~~lfVgnLp~~~t----e~~L~~~F~~~G~i~v~~v~i~~d~~----------------------------------- 94 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTT----DQQLIQVIRSIGVYDVVELKFAENRA----------------------------------- 94 (156)
T ss_dssp --CEEEEECCCTTCC----HHHHHHHHHHTTCCCEEEEEEEECTT-----------------------------------
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHHCCccEEEEEEEecCC-----------------------------------
Confidence 468999999999886 78999999998332788887775421
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEeec
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 345 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 345 (726)
..+..|.|||+|.+.++|..|.+.+... +...+.|..
T Consensus 95 -----------------------------------------tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 95 -----------------------------------------NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp -----------------------------------------TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 1124579999999999999999987654 334566766
Q ss_pred C
Q 004876 346 A 346 (726)
Q Consensus 346 A 346 (726)
|
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 6
No 106
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.99 E-value=0.01 Score=49.22 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=28.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i 37 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMT----EDELREFFSQY--GDVMDVFI 37 (88)
T ss_dssp SCCCEEEEESCCSSSC----HHHHHHHSTTT--SCCCEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEE
Confidence 3579999999999887 78999999887 56766653
No 107
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.96 E-value=0.037 Score=52.97 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 10 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 48 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETT----DESLRSHFEQW--GTLTDCVVMRD 48 (196)
T ss_dssp CGGGGEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEEc
Confidence 35679999999999886 79999999988 67888876653
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.95 E-value=0.01 Score=50.70 Aligned_cols=36 Identities=11% Similarity=0.359 Sum_probs=27.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++ | |.++.+.+
T Consensus 17 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 52 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 52 (100)
T ss_dssp ---CEEEESCCSSCCS----SSHHHHHSCSS--C-EEEEECSC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEEe
Confidence 5679999999999987 57899999987 5 88877554
No 109
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.93 E-value=0.012 Score=51.56 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=30.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 24 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (114)
T 2cq4_A 24 DARTVFCMQLAARIR----PRDLEDFFSAV--GKVRDVRIIS 59 (114)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEeEEEEEe
Confidence 358999999999886 68999999987 6788877654
No 110
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.91 E-value=0.037 Score=48.27 Aligned_cols=37 Identities=8% Similarity=0.259 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 59 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMD----EQELENMLKPF--GQVISTRILR 59 (114)
T ss_dssp CCTTEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 4578999999999876 78899999987 6788777654
No 111
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.86 E-value=0.016 Score=50.85 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=28.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCc-eEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF-YRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v-~~v~i~ 228 (726)
...+||.|.|||.+.+ +++|+++|+++ |.| .++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g~v~~~v~i~ 49 (114)
T 2cpy_A 13 SAKVCAHITNIPFSIT----KMDVLQFLEGI--PVDENAVHVL 49 (114)
T ss_dssp SCCCEEEEESCCTTSC----HHHHHHHTTTS--CCCSTTEEEC
T ss_pred CCccEEEEeCcCCcCC----HHHHHHHHHhC--CCcCCeEEEE
Confidence 4679999999999987 68899999987 556 555544
No 112
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.86 E-value=0.021 Score=46.48 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=25.9
Q ss_pred cceEEEecCCCCCCCCC--hHHHHHHHHHHhCCCCceEEE
Q 004876 189 QFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSM 226 (726)
Q Consensus 189 ~~TVlV~~IP~~~~~~~--~~~~L~~~f~~~~p~~v~~v~ 226 (726)
++||.|.|||.+..+.. .+++|+++|+++ |.|.++.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~ 38 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDF 38 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEE
Confidence 46899999998774210 258899999887 5676654
No 113
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=95.84 E-value=0.05 Score=46.26 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=27.1
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 2 ~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 34 (101)
T 2hvz_A 2 KVYVGNLGTGAG----KGELERAFSYY--GPLRTVWIAR 34 (101)
T ss_dssp EEEEECCCSSCS----HHHHHHHHHHH--CCCSEEEEES
T ss_pred EEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEee
Confidence 799999999876 78899999988 5677776554
No 114
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.81 E-value=0.026 Score=49.55 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=26.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
+.++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 15 ~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 48 (115)
T 3beg_B 15 SENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADV 48 (115)
T ss_dssp --CCEEEEECCSSCC----TTHHHHHHGGG--SCEEEEEE
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 568999999999887 58899999987 56666543
No 115
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.81 E-value=0.013 Score=54.69 Aligned_cols=101 Identities=8% Similarity=0.147 Sum_probs=67.3
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
.++||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 40 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTT----EDNLREYFGKY--GTVTDLKIMKDPA----------------------------------- 40 (167)
T ss_dssp GGGEEEECSCCTTCC----HHHHHHHHTTT--CCEEEEECCCCTT-----------------------------------
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEECCC-----------------------------------
Confidence 368999999999886 78999999987 6788776543210
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCCCCceEeecCC
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 347 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP 347 (726)
..+..|.|||+|.+.++|..|.+..+.-+...+.+..+.
T Consensus 41 -----------------------------------------~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 41 -----------------------------------------TGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAI 79 (167)
T ss_dssp -----------------------------------------TSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECC
T ss_pred -----------------------------------------CCCccceEEEEEccHHHHHHHHhcccccCCeEccccccc
Confidence 123568999999999999999885322222333333332
Q ss_pred ------CCCCeeeCCcCCchHHHHHHHHH
Q 004876 348 ------ESRELIWNNLNIKFFQRQIRQYV 370 (726)
Q Consensus 348 ------~P~DIiW~NL~~~~~~r~~R~~~ 370 (726)
.+..|.=.||..+..+..++.++
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHH
Confidence 22346667777665555555543
No 116
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.80 E-value=0.058 Score=45.49 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=27.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (726)
+..++|.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~ 48 (97)
T 1why_A 15 NPTTRLWVGGLGPNTS----LAALAREFDRF--GSIRTID 48 (97)
T ss_dssp CCCSCEEEECCCSSCC----HHHHHHHHHTT--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEE
Confidence 4568999999999876 78999999987 5676653
No 117
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=95.79 E-value=0.043 Score=47.58 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=27.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 29 ~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~ 62 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQ----ESELNEIFGPF--GPMKEVK 62 (108)
T ss_dssp CSCSEEEECSSCTTCC----HHHHHHHHTTT--SCCCEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 5678999999999886 68899999876 5565554
No 118
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=95.78 E-value=0.036 Score=52.00 Aligned_cols=38 Identities=5% Similarity=0.157 Sum_probs=31.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....+||.|.|||.+++ .+.|+++|+++ |.|.++.+..
T Consensus 69 ~~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~i~~ 106 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNL 106 (165)
T ss_dssp CC-CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcC--CCEEEEEEEe
Confidence 34578999999999876 78999999998 6788887764
No 119
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.77 E-value=0.031 Score=47.63 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=28.4
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 349 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 349 (726)
..+.|||+|.+.++|..|.+.++.. +...++|+.|-.+
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 4579999999999999999876654 2345667766443
No 120
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.74 E-value=0.029 Score=48.98 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=27.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (726)
.+.+||.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 8 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~ 41 (111)
T 1whx_A 8 RSKTVILAKNLPAGTL----AAEIQETFSRF--GSLGRVL 41 (111)
T ss_dssp EEEEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 3578999999999876 78999999987 6676654
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.71 E-value=0.074 Score=44.84 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 349 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 349 (726)
..+.|||+|.+.++|..|.+.+... +...++|+.|-++
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3478999999999999999887654 3456777776443
No 122
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.70 E-value=0.018 Score=50.97 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=29.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCC-CCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p-~~v~~v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++.+ +.|.+|.+.+
T Consensus 15 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~G~~~~v~~v~i~~ 54 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCS----IEDVQNFLSDCTIHDGVAGVHFIY 54 (118)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHTTTSCBTTGGGGEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHcCCccCceeEEEEE
Confidence 4578999999999987 6889999998632 1266666554
No 123
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=95.62 E-value=0.076 Score=44.94 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=28.9
Q ss_pred CCccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 186 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 186 ~~~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
.+..++|.|.|||. +.. +++|+++|+++ |.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t----~~~L~~~F~~~--G~v~~v~i 55 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQINI 55 (97)
T ss_dssp CCTTCEEEEESCCSSCCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 35689999999996 776 78999999987 56766544
No 124
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.61 E-value=0.026 Score=49.24 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=27.3
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccC--CCCceEeecC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (726)
+..+.|||+|.+.++|..|.+.++.. ....++|+.|
T Consensus 65 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 65 RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35689999999999999999877654 2345666655
No 125
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.038 Score=46.64 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=27.4
Q ss_pred CCccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 186 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 186 ~~~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
.+..+||.|.|||. +.+ +++|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t----~~~l~~~F~~~--G~v~~v~i 43 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQINI 43 (96)
T ss_dssp --CCEEEEEESSTTSCCC----HHHHHHHHTTT--CCCCEEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 35678999999997 776 78999999887 56666543
No 126
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.61 E-value=0.022 Score=51.88 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=29.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCC---ceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDT---FYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~---v~~v~i~~ 229 (726)
...++|.|.|||.+.+ +++|+++|+++ |. |.+|.+++
T Consensus 42 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~--G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCS----VEDVQNFLSDC--TIHDGAAGVHFIY 81 (136)
T ss_dssp CTTCEEEEESCCTTCC----HHHHHHHTTTC--CCSSSSTTEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcCceeEEEEEE
Confidence 4578999999999887 78999999987 44 66666654
No 127
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.53 E-value=0.08 Score=48.62 Aligned_cols=76 Identities=22% Similarity=0.194 Sum_probs=58.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 71 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 108 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGN----KTELERAFGYY--GPLRSVWVARN------------------------------------ 108 (150)
T ss_dssp TTSCEEEEESCCSCCS----CHHHHHHHHHH--SCEEEEEECSS------------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEeeC------------------------------------
Confidence 5679999999999987 58899999998 67877765432
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~ 344 (726)
+.|.|||+|.+..+|..|.+.++... ...++|+
T Consensus 109 ---------------------------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 109 ---------------------------------------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp ---------------------------------------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred ---------------------------------------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 13689999999999999998776543 4456777
Q ss_pred cCCCC
Q 004876 345 DAPES 349 (726)
Q Consensus 345 ~AP~P 349 (726)
.|-++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 76443
No 128
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.52 E-value=0.028 Score=47.88 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=27.4
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccCC--CCceEeecCC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (726)
+..|.|||+|.+.++|..|.+ +.... ...+.|+.|-
T Consensus 56 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 56 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 456899999999999999998 65442 4456676663
No 129
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.51 E-value=0.014 Score=51.02 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=60.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHH---HHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVD---SYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGK 263 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~---~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~ 263 (726)
.+..+|.|.|||.+.++ ++|+ ++|+++ |.|.++.+..|...
T Consensus 13 ~~~~~l~V~nLp~~~~~----~~l~~~~~~F~~~--G~i~~v~i~~~~~~------------------------------ 56 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLAD----PEVLKRPEYFGKF--GKIHKVVINNSTSY------------------------------ 56 (111)
T ss_dssp CCSSCEEEEEECTTTCC----HHHHHSTTTTTTT--SCEEEEEEECCSSC------------------------------
T ss_pred cCCCEEEEECCCCCCCH----HHHHHHHHHhhcc--CCEEEEEEecCCCc------------------------------
Confidence 46789999999999874 7788 899887 67888877643210
Q ss_pred CCCCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCce
Q 004876 264 PEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTW 341 (726)
Q Consensus 264 ~~~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~ 341 (726)
+ + ...+.|.|||+|.+.++|..|.+.+... +...+
T Consensus 57 --~-~----------------------------------------~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 57 --A-G----------------------------------------SQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp --C-S----------------------------------------SSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred --C-c----------------------------------------cCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 0 0 1135689999999999999999987554 34456
Q ss_pred EeecCC
Q 004876 342 TVSDAP 347 (726)
Q Consensus 342 ~v~~AP 347 (726)
+|+.|-
T Consensus 94 ~V~~a~ 99 (111)
T 2cpi_A 94 KASLGT 99 (111)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 677663
No 130
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.49 E-value=0.039 Score=47.51 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=29.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCC-ceEeecCCCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVD-TWTVSDAPES 349 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~-~~~v~~AP~P 349 (726)
..|.|||+|.+..+|..|.+.+... ... .++|..|-+-
T Consensus 60 ~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 60 TKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp SCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 4589999999999999999987654 333 6778777543
No 131
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=95.47 E-value=0.032 Score=46.22 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=28.8
Q ss_pred ceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCCC
Q 004876 314 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 349 (726)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 349 (726)
|.|||+|.+.++|..|.+.++.. +...++++.||..
T Consensus 41 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 41 RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 68999999999999999977654 3456778888654
No 132
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.46 E-value=0.026 Score=49.25 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=29.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|||.+.+ +++|+++|+++ .|.+|.+++
T Consensus 14 ~~~~~v~V~nLp~~~t----e~dl~~~F~~~---~v~~v~i~~ 49 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAM----ENDVRDFFHGL---RVDAVHLLK 49 (109)
T ss_dssp HHHHEEEEECCCSSCC----HHHHHHHTTTS---CCCEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHhccC---CeeEEEEEE
Confidence 3468999999999887 79999999986 467777654
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.43 E-value=0.033 Score=48.16 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=27.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCC-CCceEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p-~~v~~v~i~ 228 (726)
...++|.|.|||.+.+ +++|+++|+++.+ ++|.++.+.
T Consensus 9 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~g~~~~v~~v~i~ 47 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCT----MEDVLNFFSDCRIRNGENGIHFL 47 (107)
T ss_dssp SSCCEEEEECCCSSCC----SHHHHHHTTTSCBTTTTTTEECC
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHhcCCcCCcceEEEE
Confidence 5679999999999987 5889999987632 225555433
No 134
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.42 E-value=0.023 Score=48.82 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=28.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|||.+.+ +++|+++|+++ | +.+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G-~~~v~i~~ 48 (102)
T 1wez_A 13 TTGHCVHMRGLPYRAT----ENDIYNFFSPL--N-PMRVHIEI 48 (102)
T ss_dssp SSSCEEEEESCCTTCC----HHHHHHSSCSC--C-CSEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--C-ceEEEEEE
Confidence 4578999999999887 78999999876 3 34776654
No 135
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.058 Score=45.81 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=28.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 25 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~~ 59 (101)
T 2la4_A 25 PRVTTAYIGNIPHFAT----EADLIPLFQNF--GFILDFKH 59 (101)
T ss_dssp SSCCEEEEESCCTTCC----HHHHHHHHHTT--SCCSEEEE
T ss_pred CCCCEEEEcCCCcccC----HHHHHHHHHhC--CCEEEEEE
Confidence 5678999999999886 78999999987 56655543
No 136
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.37 E-value=0.051 Score=52.86 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=31.2
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 124 ~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 160 (216)
T 2qfj_A 124 AFNRIYVASVHQDLS----DDDIKSVFEAF--GKIKSATLARD 160 (216)
T ss_dssp TSCEEEEECCCTTCC----HHHHHHHHTTS--SCEEEEEEEEC
T ss_pred CCcEEEEeCCCCcCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 468999999999876 79999999987 67888887654
No 137
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.36 E-value=0.058 Score=46.59 Aligned_cols=84 Identities=8% Similarity=-0.024 Sum_probs=60.0
Q ss_pred CccceEEEecCC--CCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 004876 187 PQQFAVLVRDLP--DLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP 264 (726)
Q Consensus 187 ~~~~TVlV~~IP--~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~ 264 (726)
..+++|.+.|+. .++.+ +.+++|++.|+++ |.|.++.+.+|...
T Consensus 6 ~~s~~l~l~Nm~~~~~l~d-d~~~dl~~~f~~~--G~V~~v~i~~~~~~------------------------------- 51 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDE-DLEVETKEECEKY--GKVGKCVIFEIPGA------------------------------- 51 (105)
T ss_dssp SCCSEEEEESSSCSCCC----CHHHHHHHGGGG--SCEEEEEEEECSSC-------------------------------
T ss_pred CCCCEEEEEcCCChHHhhH-HHHHHHHHHHHhc--CCEEEEEEecCCCC-------------------------------
Confidence 457899999985 34443 3478999999987 78999888764210
Q ss_pred CCCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceE
Q 004876 265 EGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWT 342 (726)
Q Consensus 265 ~~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~ 342 (726)
..+..|.|||+|.+..+|..|.+.++.. ....+.
T Consensus 52 --------------------------------------------~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 52 --------------------------------------------PDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp --------------------------------------------CTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred --------------------------------------------CCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 0124589999999999999999988765 344566
Q ss_pred eecCCC
Q 004876 343 VSDAPE 348 (726)
Q Consensus 343 v~~AP~ 348 (726)
+..|++
T Consensus 88 v~~a~~ 93 (105)
T 2pe8_A 88 ACFYNL 93 (105)
T ss_dssp EEECCH
T ss_pred EEEcCH
Confidence 777753
No 138
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.061 Score=49.66 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=31.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 85 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp TTCEEEEEESCCTTCC----HHHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCCceEEECCCCCCCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 4578999999999886 79999999876 67888877653
No 139
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.32 E-value=0.041 Score=48.22 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=29.1
Q ss_pred CccceEEEecCCCC-CCCCChHHHHHHHHHHhCCCCceEEEE
Q 004876 187 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~-~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
...++|.|.|||.+ .+ +++|+++|+++ |.|.+|.+
T Consensus 23 ~p~~~l~V~NLp~~~~t----e~~L~~lF~~f--G~V~~v~i 58 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYS----DSAVLKLAEPY--GKIKNYIL 58 (112)
T ss_dssp CCCCEEEEESCCCSSCC----SHHHHTTTTTT--SCCSEEEE
T ss_pred CCCCEEEEeCCCCccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 45789999999997 76 58899999987 67888765
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.27 E-value=0.039 Score=49.60 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=28.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceE--EEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR--SMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~--v~i~~ 229 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.. |.+++
T Consensus 21 ~~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~v~~~~v~i~~ 59 (131)
T 2m2b_A 21 NANDTIILRNLNPHST----MDSILGALAPY--AVLSSSNVRVIK 59 (131)
T ss_dssp CCCCEEEECSCCTTCC----SHHHHHHHGGG--CCCCTTTEECCB
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcceeeEEEEE
Confidence 4568999999999987 58899999987 55643 55443
No 141
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.26 E-value=0.12 Score=52.36 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=74.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 20 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~------------------------------------- 56 (261)
T 3sde_A 20 TQRCRLFVGNLPTDIT----EEDFKRLFERY--GEPSEVFINR------------------------------------- 56 (261)
T ss_dssp CGGGEEEEESCCTTCC----HHHHHHHTGGG--CCCSEEEEET-------------------------------------
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEeC-------------------------------------
Confidence 4678999999999886 79999999987 5677665410
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
..|.|||+|.+..+|..|.+.+... ....+.+.
T Consensus 57 ---------------------------------------------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 57 ---------------------------------------------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp ---------------------------------------------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ---------------------------------------------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 0269999999999999999876554 34567788
Q ss_pred cCCCCCCeeeCCcCCchHHHHHHHHH
Q 004876 345 DAPESRELIWNNLNIKFFQRQIRQYV 370 (726)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~~~ 370 (726)
.|.+..-|.=.||..+..+..++.++
T Consensus 92 ~a~~~~~l~v~nl~~~~t~~~l~~~F 117 (261)
T 3sde_A 92 FATHGAALTVKNLSPVVSNELLEQAF 117 (261)
T ss_dssp ECCCSSEEEEESCCTTCCHHHHHHHH
T ss_pred ecccCCcccccCCCCCCCHHHHHHHH
Confidence 88888888889998776666555543
No 142
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.16 E-value=0.042 Score=54.72 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=58.5
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
..++|.|.|||.+++ +++|+++|+++....|.+|.+.+|-.
T Consensus 67 ~~~~lfVgnL~~~~t----e~~L~~~F~~~G~~~v~~v~i~~d~~----------------------------------- 107 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFENRA----------------------------------- 107 (229)
T ss_dssp --CEEEEESCCTTCC----HHHHHHHHHTTTCCCEEEEEEEECTT-----------------------------------
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHHHCCcceEEEEEEecCC-----------------------------------
Confidence 467999999999887 78999999987222788888775421
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeec
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (726)
..+..+.|||+|.+..+|..|.+.+.... ...++|..
T Consensus 108 -----------------------------------------tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 108 -----------------------------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp -----------------------------------------TCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 01234799999999999999998766543 34566666
Q ss_pred CC
Q 004876 346 AP 347 (726)
Q Consensus 346 AP 347 (726)
|-
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 143
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.13 E-value=0.059 Score=45.77 Aligned_cols=35 Identities=20% Similarity=0.075 Sum_probs=26.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCCceEeecC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (726)
..+.|||+|.+.++|..|.+.++.. +...++|+.|
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4589999999999999999976543 3345666665
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.11 E-value=0.065 Score=49.71 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...++|.|.|+|.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 87 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 124 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GSIVQKNILRD 124 (168)
T ss_dssp TTTCEEEEESCCTTCC----HHHHHHHHTSS--SCEEEEEEEEC
T ss_pred CCCCCEEEeCCCCCCC----HHHHHHhhhcC--CcEEEEEEEEc
Confidence 4578999999999876 78999999886 67888776653
No 145
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.02 E-value=0.16 Score=50.09 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=29.7
Q ss_pred CccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
+..+||.|.|||. +.+ +++|+++|+++ |.|.++.+.
T Consensus 32 ~~~~~l~V~nLp~~~~t----e~~L~~~F~~~--G~i~~v~i~ 68 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKIL 68 (229)
T ss_dssp CCCSEEEEESCCTTTCC----HHHHHHHHHHH--TCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEEE
Confidence 4579999999998 776 79999999998 667777654
No 146
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=94.97 E-value=0.09 Score=49.02 Aligned_cols=37 Identities=3% Similarity=0.132 Sum_probs=30.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 93 ~~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~~~~ 129 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCT----ENDIRVMFSSF--GQIEECRILR 129 (175)
T ss_dssp GGGSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCeEEEcCCCCcCC----HHHHHHHHHhC--CCEEEEEEEE
Confidence 4678999999999876 78999999987 6688877664
No 147
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=94.95 E-value=0.093 Score=48.45 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=30.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|+|.+.. +++|+++|+++ |.|.++.+.+
T Consensus 86 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~ 122 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMT----QKELEQLFSQY--GRIITSRILV 122 (167)
T ss_dssp GTTCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEECCCCCcCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 4568999999999876 78999999987 6788877664
No 148
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.90 E-value=0.1 Score=53.36 Aligned_cols=57 Identities=25% Similarity=0.260 Sum_probs=45.2
Q ss_pred ceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCCCCCeeeCCcCCchHHHHHHHHH
Q 004876 314 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYV 370 (726)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~ 370 (726)
|.|||+|.+.++|..|.+.+... ....+.+..+|...-|.=.||..+..+..++.++
T Consensus 58 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f 116 (284)
T 3smz_A 58 GTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELV 116 (284)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHH
Confidence 68999999999999999876654 3456778888888889999998877666665543
No 149
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=94.89 E-value=0.029 Score=51.25 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=27.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
...++|.|.|||.+.+ +++|+++|+++ | +.+|.++
T Consensus 44 ~~~~~lfV~nLp~~~t----e~dL~~~F~~~--G-i~~v~i~ 78 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKAT----ENDIYNFFSPL--N-PVRVHIE 78 (139)
T ss_dssp -CCCCEECCSCCTTCC----HHHHHHHHCSC--C-CSEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEE
Confidence 4578999999999887 79999999986 3 4566544
No 150
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.85 E-value=0.023 Score=50.55 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (726)
...++|.|.|||.+.+ +++|+++|+++
T Consensus 23 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~ 49 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAE----NKHVIDFFKKL 49 (124)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHSCSS
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc
Confidence 3568999999999887 68999999876
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=94.77 E-value=0.17 Score=49.22 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=29.0
Q ss_pred CccceEEEecCC-CCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 187 PQQFAVLVRDLP-DLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP-~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
++..||.|.||| .+++ ++.|++.|+++ |.|.++.+.
T Consensus 2 ~~~~~l~V~nL~~~~~~----~~~L~~~F~~~--G~v~~v~i~ 38 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMN----CDRVFNVFCLY--GNVEKVKFM 38 (205)
T ss_dssp CCCSEEEEECCCTTTCC----HHHHHHHHTTT--SCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 456899999999 6766 78999999987 678877653
No 152
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.74 E-value=0.065 Score=49.97 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=31.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 92 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTTTCEEEECCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCceEEEEEec
Confidence 3468999999999886 78999999987 67888776653
No 153
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=94.67 E-value=0.059 Score=48.26 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (726)
...++|.|.|||.+.+ +++|+++|+++
T Consensus 40 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~ 66 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCT----KEEIVQFFSGL 66 (126)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcC
Confidence 4578999999999987 79999999986
No 154
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.61 E-value=0.13 Score=43.01 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v 225 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVD----SAQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCC----HHHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 4568999999999886 78999999987 566654
No 155
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.44 E-value=0.14 Score=42.70 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=26.8
Q ss_pred CceEEEEecCHHHHHHHHhhhcc-C--CCCceEeecCC
Q 004876 313 LGAALVFFTSRVAAASAAQSLHA-Q--LVDTWTVSDAP 347 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~-~--~~~~~~v~~AP 347 (726)
.+.|||+|++.++|..|.+.++. . +...++|+.|-
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 47899999999999999987765 3 34456666653
No 156
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=94.43 E-value=0.24 Score=41.17 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=57.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
..+..++|.||+.+.+ ++.|++.|.++ |.|.++++..
T Consensus 5 ~~~~wL~VgNL~~~~t----e~~L~~lF~q~--G~V~~~~l~~------------------------------------- 41 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQID----GPTLRTLCMQH--GPLVSFHPYL------------------------------------- 41 (89)
T ss_dssp CCCCEEEEECCCTTCC----CHHHHHHHHHH--SCEEEEEEET-------------------------------------
T ss_pred CccceEEEeCCCccCC----HHHHHHHHHhh--CCEEEEEEcC-------------------------------------
Confidence 4678999999999887 58999999998 6787765421
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~ 344 (726)
+.|.|||+|.++++|..|.+.+...+ ...++|+
T Consensus 42 ---------------------------------------------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 42 ---------------------------------------------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp ---------------------------------------------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ---------------------------------------------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 23899999999999999999876543 4467777
Q ss_pred cC
Q 004876 345 DA 346 (726)
Q Consensus 345 ~A 346 (726)
.|
T Consensus 77 ~A 78 (89)
T 2wbr_A 77 SP 78 (89)
T ss_dssp CC
T ss_pred EC
Confidence 77
No 157
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=94.38 E-value=0.064 Score=51.83 Aligned_cols=35 Identities=6% Similarity=0.204 Sum_probs=30.1
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
.+||.|.|||.+.+ .+.|+++|+++ |.|.+|.+.+
T Consensus 109 ~~~l~V~nLp~~~t----~~~L~~~F~~~--G~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCC----HHHHHHHHTTS--CCEEEEEEEE
T ss_pred cCEEEecCCCCcCC----HHHHHHHHhcC--CCEEEEEEEE
Confidence 58999999999876 79999999987 6788887775
No 158
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=94.35 E-value=0.17 Score=48.40 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=27.9
Q ss_pred ccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 188 QQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 188 ~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
+++||.|.|||. +.+ +++|+++|+++ |.|.++.+.
T Consensus 2 ~~~~l~v~nlp~~~~~----~~~l~~~F~~~--G~i~~v~i~ 37 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKIL 37 (198)
T ss_dssp CCCEEEEECCCSSSCC----HHHHHHHHHTT--CCCSEEECS
T ss_pred CCcEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 468999999999 776 79999999987 557666543
No 159
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.27 E-value=0.27 Score=45.97 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=27.5
Q ss_pred ceEEEEecCHHHHHHHHhhhccCCC----CceEeecCC
Q 004876 314 GAALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAP 347 (726)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~AP 347 (726)
+.|||+|.+.++|..|.+.+....- ..++|+.|-
T Consensus 85 gfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 85 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 6899999999999999998876543 456777763
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=94.25 E-value=0.11 Score=49.44 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=31.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 102 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTE----EHHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp -CCSEEEEECCTTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEeec
Confidence 4568999999999876 78999999977 67888877653
No 161
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.25 E-value=0.21 Score=51.12 Aligned_cols=99 Identities=24% Similarity=0.245 Sum_probs=70.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 39 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 78 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYN----QNKVYKYFKHC--GPIIHVDVADSLK---------------------------------- 78 (292)
T ss_dssp ---CEEEEEEECTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECCC----------------------------------
Confidence 4579999999999886 78999999987 6788877654210
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
...|.|||+|.+.++|..|.+ +... +...+.+.
T Consensus 79 --------------------------------------------~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 79 --------------------------------------------KNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp --------------------------------------------SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred --------------------------------------------CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 124799999999999999996 3322 23345666
Q ss_pred cCCCCCCeeeCCcCCchHHHHHHHHHH
Q 004876 345 DAPESRELIWNNLNIKFFQRQIRQYVV 371 (726)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~~~~ 371 (726)
.+ ...-|.=.||.....+..++.++.
T Consensus 114 ~~-~~~~l~v~nlp~~~t~~~l~~~f~ 139 (292)
T 2ghp_A 114 HL-TECTLWMTNFPPSYTQRNIRDLLQ 139 (292)
T ss_dssp EC-CSCEEEEECCCTTCCHHHHHHHHH
T ss_pred EC-CCCEEEEECCCCCCCHHHHHHHHH
Confidence 66 356777788887776666666543
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=94.22 E-value=0.13 Score=47.51 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=29.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 86 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 121 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVR----PKEFEEFFSQW--GTIIDAQLML 121 (167)
T ss_dssp HCEEEEEEEECTTCC----HHHHHHHHHTT--SCCSEEECCC
T ss_pred CCCeEEECCCCCCCC----HHHHHHHHHhC--ccEEEEEEEE
Confidence 367999999999886 68899999987 6677776543
No 163
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=94.19 E-value=0.13 Score=56.22 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=61.6
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (726)
...||.|.|||.+++ ++.|+++|+++ |.|.+|.++.|..
T Consensus 101 ~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~----------------------------------- 139 (437)
T 3pgw_S 101 AFKTLFVARVNYDTT----ESKLRREFEVY--GPIKRIHMVYSKR----------------------------------- 139 (437)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEeeccCC-----------------------------------
Confidence 347999999999886 68999999987 6788877664310
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeec
Q 004876 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (726)
Q Consensus 268 rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (726)
..+..|.|||+|.+..+|..|.+.+.... ...+.|..
T Consensus 140 -----------------------------------------tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 140 -----------------------------------------SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred -----------------------------------------CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 11345799999999999999998876543 34566766
Q ss_pred CCCCCCeee
Q 004876 346 APESRELIW 354 (726)
Q Consensus 346 AP~P~DIiW 354 (726)
|-....=-|
T Consensus 179 a~~~~~~~~ 187 (437)
T 3pgw_S 179 ERGRTVKGW 187 (437)
T ss_pred eCCCCCCCC
Confidence 643333334
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=93.96 E-value=0.18 Score=48.11 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=58.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 112 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~v~~~~~~~~~~---------------------------------- 151 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKDSA---------------------------------- 151 (198)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTB--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--CCccEEEEeecCC----------------------------------
Confidence 4569999999999876 78999999987 6788877665310
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccC--CCCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (726)
.....|.|||+|.+.++|..|.+.++.. +...+.+.
T Consensus 152 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 152 ------------------------------------------TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp ------------------------------------------TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 1124579999999999999999977654 23456666
Q ss_pred cC
Q 004876 345 DA 346 (726)
Q Consensus 345 ~A 346 (726)
.|
T Consensus 190 ~a 191 (198)
T 2yh0_A 190 RA 191 (198)
T ss_dssp ES
T ss_pred EC
Confidence 65
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=93.94 E-value=0.15 Score=49.84 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=30.2
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 102 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~~~i~~ 137 (213)
T 4f02_A 102 GVGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 137 (213)
T ss_dssp CTTEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred ccccceECCcccccH----HHHHHHHHhhc--CCeEEEEeec
Confidence 357899999999886 78999999988 6788887664
No 166
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=92.53 E-value=0.014 Score=51.28 Aligned_cols=36 Identities=28% Similarity=0.172 Sum_probs=25.9
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccCC--CCceEeecC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 346 (726)
+..+.|||+|.+.++|..|.+.+.... ...++|+.|
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 356899999999999999988665432 234455554
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=93.36 E-value=0.17 Score=51.49 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=61.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (726)
...++|.|.|+|.++.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 182 ~~~~~l~v~nlp~~~~~---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 221 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFND---VDALCRALSAV--HSPTFCQLACGQ----------------------------------- 221 (284)
T ss_dssp TSCSEEEEECCCTTCCC---HHHHHHHTCSS--SCCSEEEEEECS-----------------------------------
T ss_pred CCccEEEEecCCcccCC---HHHHHHHhhCC--CCeEEEEEEECC-----------------------------------
Confidence 45689999999999755 89999999977 678887766321
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEee
Q 004876 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (726)
Q Consensus 267 ~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~ 344 (726)
..++.|.|||+|.+.++|..|.+.+.... ...+++.
T Consensus 222 ------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 222 ------------------------------------------DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp ------------------------------------------SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 01245899999999999999999876553 3456777
Q ss_pred cCCCCC
Q 004876 345 DAPESR 350 (726)
Q Consensus 345 ~AP~P~ 350 (726)
.|.+..
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 775443
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.98 E-value=0.13 Score=43.39 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=36.0
Q ss_pred ceEEEEecCHHHHHHHHhhhccCC--CCceEeecCCCCCCeee
Q 004876 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIW 354 (726)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DIiW 354 (726)
|.|||+|+++++|+.|.+.++... ...+++..|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 899999999999999999887765 45789999999999863
No 169
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=92.84 E-value=0.2 Score=46.76 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=40.3
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCC--------CCCeeeCCcCCchHHHHHHHHHH
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE--------SRELIWNNLNIKFFQRQIRQYVV 371 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~--------P~DIiW~NL~~~~~~r~~R~~~~ 371 (726)
+..|.|||+|.+.++|..|.+ +... ....+.+..|.. ..-|.=.||..+..+..++..+.
T Consensus 52 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 121 (175)
T 1fje_B 52 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE 121 (175)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCT
T ss_pred ccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHH
Confidence 456899999999999999996 4332 234456665542 23467778877766666665543
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=92.78 E-value=0.67 Score=47.00 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=25.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHH----HHHHHhCCCCceEEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~----~~f~~~~p~~v~~v~i 227 (726)
...+||.|.|||.+.+ +++|+ ++|+++ |.|.++.+
T Consensus 7 ~~~~~l~V~nlp~~~~----~~~l~~~L~~~F~~~--G~i~~v~~ 45 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIK----KDELKKSLYAIFSQF--GQILDILV 45 (282)
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHHhcc--CCeEEEEE
Confidence 5679999999999887 46655 677665 56766654
No 171
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=92.70 E-value=0.065 Score=48.80 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=27.2
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccCC--CCceEeecC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 346 (726)
+..|.|||+|.+..+|..|.+.++... ...+.|..|
T Consensus 90 ~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 90 RMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 456899999999999999999776542 344556555
No 172
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=92.57 E-value=1.3 Score=40.71 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=36.9
Q ss_pred CceEEEEecCHHHHHHHHhhhccC--CCCceEeecCC------CCCCeeeCCcCCchHHHHHHHHH
Q 004876 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP------ESRELIWNNLNIKFFQRQIRQYV 370 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 370 (726)
.|.|||+|.+.++|..|. .+... ....+.+..+. .+.-|.=.||..+..+..++..+
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 589999999999999998 44332 22334444432 23556667887766666555544
No 173
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=92.35 E-value=0.35 Score=48.71 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=30.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
...+|.|.|+|.+.+ ++.|+++|+++ |.|.++.+.+|
T Consensus 95 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVS----NELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEE
T ss_pred cCCcccccCCCCCCC----HHHHHHHHHhc--CCeEEEEeeeC
Confidence 467999999999886 78999999987 67888877653
No 174
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=91.70 E-value=0.24 Score=47.24 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.6
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (726)
.++||.|.|||.+.+ +++|+++|+++
T Consensus 3 ~~~~l~V~nLp~~~t----e~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGIT----EEAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCC----HHHHHHHHHHH
Confidence 579999999999886 78999999886
No 175
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.63 E-value=0.73 Score=40.25 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=27.3
Q ss_pred CccceEEE--ecCCCCCCCCChHHHHHHHHHHhCCCCceEEE
Q 004876 187 PQQFAVLV--RDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (726)
Q Consensus 187 ~~~~TVlV--~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (726)
...+++.| .|+|.+.+ +++|+++|+++ |.|.+|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~t----e~~L~~~F~~f--G~v~~v~ 58 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVS----RNQLLPVLEKC--GLVDALL 58 (114)
T ss_dssp SCCSEEEEETCTGGGTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCCEEEEECCCCCCCCC----HHHHHHHHHhc--CCeEEEE
Confidence 45688999 55998876 79999999998 5777664
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=91.61 E-value=0.46 Score=46.13 Aligned_cols=35 Identities=9% Similarity=-0.077 Sum_probs=28.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCc--eEEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF--YRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v--~~v~i 227 (726)
+..+||.|.|||.+.. +++|+++|+++ |.| .++.+
T Consensus 121 ~p~~~l~v~NLp~~~t----~~~L~~~F~~~--G~v~~~~v~~ 157 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVT----EENFFEICDEL--GVKRPTSVKV 157 (205)
T ss_dssp CCCSEEEEEEECTTCC----HHHHHHHHHHH--TCCCCSEEEE
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEEE
Confidence 5578999999999876 78999999998 555 55543
No 177
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=91.60 E-value=0.45 Score=40.77 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHH-Hhhh-----------cccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeecCC
Q 004876 291 EKIKEIIPKLEAEQ-KITL-----------KEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (726)
Q Consensus 291 ~~l~~l~~~I~~~~-~~~~-----------~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (726)
+..+++.+++.++- ++.. ..+..|.|||+|.+..+|..|.+.++... ...++++.+|
T Consensus 34 ~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 34 EHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 34445566666655 4431 11347899999999999999999876653 3445566665
No 178
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.36 E-value=0.51 Score=47.00 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=30.3
Q ss_pred CccceEEEecCCCCCCCC-----ChHHHHHHHHHHhCCCCceEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQ-----SRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~-----~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
...+||.|.|||.+..+. ..++.|+++|+++ |.|++|.++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~ 176 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYV 176 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEE
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEE
Confidence 457899999999876310 1278999999987 778887665
No 179
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.13 E-value=0.31 Score=41.96 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=33.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
.+...+|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~~LfV~nLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCCTTSC----HHHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEcC
Confidence 35689999999999986 78999999998 78999998764
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=90.69 E-value=0.84 Score=43.43 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=28.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCC-CceEEEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~-~v~~v~i 227 (726)
+..+||.|.|+|.+.. +++|+++|+++ | .|.++.+
T Consensus 118 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~~v~~v~i 153 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKF 153 (198)
T ss_dssp CCCCEEEECCCCTTCC----HHHHHHHHHHT--TSCCCEEEE
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHHc--CCCceEEEE
Confidence 4579999999999876 78999999987 5 6766654
No 181
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.45 E-value=0.7 Score=39.89 Aligned_cols=64 Identities=19% Similarity=0.063 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhh--------cccCCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCCCCCeeeCC
Q 004876 293 IKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNN 356 (726)
Q Consensus 293 l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DIiW~N 356 (726)
.+++++++.++=++.. +....|.|||+|.+..+|..|.+.+... +...+++..|.+..|..++.
T Consensus 36 ~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 36 LNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp HHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred HHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 4555666655443321 1235799999999999999999887654 34567788887666655544
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=90.14 E-value=0.65 Score=47.37 Aligned_cols=36 Identities=8% Similarity=0.221 Sum_probs=29.5
Q ss_pred ccceEEEecCCCC-CCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 188 QQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 188 ~~~TVlV~~IP~~-~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
..++|.|.|||.+ .+ +++|+++|+++ |.|.++.+.+
T Consensus 209 ~~~~l~v~nlp~~~~t----~~~l~~~F~~~--G~v~~v~i~~ 245 (292)
T 2ghp_A 209 EGREIMIRNLSTELLD----ENLLRESFEGF--GSIEKINIPA 245 (292)
T ss_dssp TTTEEEEEEECTTTCC----HHHHHHHHGGG--SCEEEEECCS
T ss_pred CCceEEEECCCcccCC----HHHHHHHHhcc--CCeeEEEEEe
Confidence 4589999999998 65 79999999987 6788776554
No 183
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=90.13 E-value=0.23 Score=41.17 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=31.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
.++.+|+.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 8 ~~~~~~l~V~~Lp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 45 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMT----AEELQQFFCQY--GEVVDVFIPK 45 (89)
T ss_dssp ---CCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECCS
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 36789999999999987 79999999987 7899988776
No 184
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=90.02 E-value=1.9 Score=38.17 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=28.7
Q ss_pred eEEEEecCHHHHHHHHhhhccCCC----CceEeecCCCCC
Q 004876 315 AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPESR 350 (726)
Q Consensus 315 ~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~AP~P~ 350 (726)
.|||+|.+.++|..|.+.+....- ..++|..|-.++
T Consensus 64 ~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 64 QAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 599999999999999998877642 357888875444
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=89.96 E-value=1.3 Score=43.37 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=29.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCC-CceEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~-~v~~v~i~ 228 (726)
+..+||.|.|+|.+.. +++|+++|+++ | .|.++.+.
T Consensus 149 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~ 185 (229)
T 2adc_A 149 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFF 185 (229)
T ss_dssp CSCSEEEEECCCTTCC----HHHHHHHHHTT--SCCEEEEEEC
T ss_pred CCCCEEEEeCCCccCC----HHHHHHHHHHc--CCCeeEEEEE
Confidence 4579999999999876 78999999987 5 67666543
No 186
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.92 E-value=0.46 Score=38.46 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t----~~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTIT----ETDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp CSSCCCEEEECCTTTSC----HHHHHHHHHTT--SCEEEEEEEG
T ss_pred CCCccEEEEcCCCCCCC----HHHHHHHHHhC--CCEeEEEEEC
Confidence 35678999999999876 78999999987 6788888875
No 187
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.17 E-value=0.53 Score=40.36 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=32.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~V~~v~i~~ 49 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVV----EADLVEALEKF--GTICYVMMMP 49 (104)
T ss_dssp CCCCSEEEEESCCSSCC----HHHHHHHHTTT--SCEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEC
Confidence 35679999999999886 78999999987 7898888764
No 188
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=89.16 E-value=1.2 Score=39.80 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=27.5
Q ss_pred eEEEEecCHHHHHHHHhhhccCCC----CceEeecCCCC
Q 004876 315 AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPES 349 (726)
Q Consensus 315 ~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~AP~P 349 (726)
.|||+|.+..+|..|.+.+....- ..++++.|-.+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 599999999999999999876542 45677777543
No 189
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=88.74 E-value=0.48 Score=40.01 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMD----ETEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEEC
Confidence 35679999999999886 78999999988 67888887753
No 190
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.55 E-value=0.5 Score=41.67 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=33.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecC
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (726)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 28 ~~ps~~LfVgNLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHHHTTT--SCCCEEEEEGG
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEeCC
Confidence 35679999999999876 78999999987 78999988753
No 191
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.96 E-value=0.56 Score=39.97 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=32.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~v~~v~i~~ 49 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVT----ETEVIALGLPF--GKVTNILMLK 49 (101)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEC
Confidence 35678999999999876 78999999987 7898887765
No 192
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=87.67 E-value=0.66 Score=40.53 Aligned_cols=55 Identities=24% Similarity=0.105 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhh--------cccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeecC
Q 004876 292 KIKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (726)
Q Consensus 292 ~l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 346 (726)
..+++++++.++-++.. .....|.|||+|.+.++|..|.+.++... ...+++..+
T Consensus 26 ~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 26 WDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 90 (114)
T ss_dssp HHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence 34567777776665432 12346999999999999999999887652 334445444
No 193
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=86.43 E-value=1.3 Score=37.78 Aligned_cols=55 Identities=20% Similarity=0.100 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhc--------------ccCCceEEEEecCHHHHHHHHhhhccCC--CCceEeecCC
Q 004876 293 IKEIIPKLEAEQKITLK--------------EKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (726)
Q Consensus 293 l~~l~~~I~~~~~~~~~--------------~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (726)
.++++++++++-++... .+..|.|||+|++.++|..|.+.++... ...+++..+|
T Consensus 25 ~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 25 YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 35566666665554310 1246899999999999999999887653 3345555543
No 194
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.16 E-value=0.57 Score=40.04 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=32.1
Q ss_pred CccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCceEEEEec
Q 004876 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (726)
Q Consensus 187 ~~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (726)
...++|.|.|||. +.+ +++|+++|+++ |.|.+|.+.+
T Consensus 13 ~p~~~l~V~nLp~~~~t----e~dL~~lF~~f--G~V~~v~i~~ 50 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNL----RYQLLQLVEPF--GVISNHLILN 50 (102)
T ss_dssp CCCCEEEEESCCCSSSH----HHHHHTTTGGG--SCEEEEEECS
T ss_pred CCCCEEEEeCCCCCcCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 4678999999999 776 78999999988 7899998875
No 195
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.84 E-value=1.5 Score=37.16 Aligned_cols=36 Identities=28% Similarity=0.197 Sum_probs=27.3
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccCCCCceEeecC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDA 346 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~A 346 (726)
+..|.|||+|.+.++|..|.+.........++|+.|
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWL 87 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECS
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEc
Confidence 457899999999999999998754444445666665
No 196
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=81.22 E-value=2 Score=34.64 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=31.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh----C----C-CCceEEEEecC
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----Y----P-DTFYRSMVVTN 230 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~----~----p-~~v~~v~i~~d 230 (726)
...+||.|.|||.+.+ +++|+++|+++ . | +.|.++.+.++
T Consensus 4 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPFGIT----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCTTCC----HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 4579999999999886 78999999987 2 1 16777777643
No 197
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.22 E-value=2.5 Score=35.05 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=27.9
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 348 (726)
..+.|||+|.+.++|..|.+.++.. ....++|+.|-.
T Consensus 48 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 48 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 4689999999999999999876543 344566766643
No 198
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=77.83 E-value=1.8 Score=35.81 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=28.7
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCC
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (726)
+..|.|||+|.+.++|..|.+.++.. +...+.++.|.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 51 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 45689999999999999999976643 34456777763
No 199
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=70.63 E-value=5.5 Score=34.77 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=27.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC--CCCceEeecCCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 348 (726)
..+.|||+|.+.++|..|.+.+... ....+.|..|-.
T Consensus 72 ~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 72 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 5689999999999999999876554 334566666543
No 200
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.97 E-value=2.6 Score=35.36 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=26.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEE
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v 225 (726)
|++.++.|.|||.+.+.++.++.|++.|+++ .|+|.+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 4444488999999987533445577888887 3477765
No 201
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=68.77 E-value=5.7 Score=35.44 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=30.1
Q ss_pred ceEEEecC----CCCCCCCChHHHHHHHHHHhCCCCceEEEEecCc
Q 004876 190 FAVLVRDL----PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (726)
Q Consensus 190 ~TVlV~~I----P~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (726)
..|.|.|+ |.... ++.|++||+++ |.|.++.+..|-
T Consensus 3 ~kI~VgnL~~~~~~~tt----e~~Lk~~Fs~f--GeV~~~~li~Dp 42 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQ----DISIKNYFKKY--GEISHFEAFNDP 42 (136)
T ss_dssp CEEEEEESSSSCCCCCC----HHHHHHHHHTT--SCCSEEEEEECT
T ss_pred cEEEEeCCCCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecC
Confidence 46899999 98876 79999999987 688888887764
No 202
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.58 E-value=4.2 Score=32.51 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred CCceEEEEecCHHHHHHHHhhh
Q 004876 312 QLGAALVFFTSRVAAASAAQSL 333 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~ 333 (726)
..+.|||+|.+.++|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 3689999999999999999876
No 203
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=65.96 E-value=4.3 Score=33.21 Aligned_cols=35 Identities=20% Similarity=-0.009 Sum_probs=23.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhccCCCCceEeecC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDA 346 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~A 346 (726)
..|.|||+|++.++|..+...-...+.....+..|
T Consensus 47 srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNA 81 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEEC
T ss_pred CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEc
Confidence 57899999999999985433322223445566655
No 204
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.92 E-value=7.4 Score=32.96 Aligned_cols=36 Identities=14% Similarity=-0.092 Sum_probs=26.4
Q ss_pred CCceEEEEecCHHHHHHHHhhhccC----CCCceEeecCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 347 (726)
..+.|||+|++.++|..|.+.+... +...+.+..|-
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 3689999999999999999876432 23455666553
No 205
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.51 E-value=6.7 Score=33.09 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=25.9
Q ss_pred CceEEEEecCHHHHHHHHhhhccC----CCCceEeecCC
Q 004876 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 347 (726)
.|.|||+|++.++|..|.+.+... +...+.|..|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 689999999999999999865432 23455666653
No 206
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=64.17 E-value=6.5 Score=39.47 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=30.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
+..+||.|.|||.+.. +++|+++|+++ |.|.++.+.
T Consensus 205 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~i~~v~~~ 240 (282)
T 3pgw_A 205 PPNHILFLTNLPEETN----ELMLSMLFNQF--PGFKEVRLV 240 (282)
T ss_pred CCCCEEEEeCCCCcCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 4578999999999876 79999999987 778888776
No 207
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.38 E-value=8.1 Score=32.76 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=28.5
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHH---hCCCCceEEEE
Q 004876 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKA---IYPDTFYRSMV 227 (726)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~---~~p~~v~~v~i 227 (726)
...+|.|+|+|++.. ++.|+-||++ -..|.|+++..
T Consensus 7 ~~~~I~V~~lPp~~~----~e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVP----DELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp CCCEEEEESCCTTSC----HHHHHHHHHCTTTTCCCCEEEEEE
T ss_pred CccEEEEECCCCCCC----hhHheEEEeCCCcCCCceeeEEEE
Confidence 457999999999875 6899999998 34567777654
No 208
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=63.34 E-value=4.5 Score=35.29 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=59.3
Q ss_pred ccceEEEecC--CCCCCCCChHHHHHHHHHHhCCCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 004876 188 QQFAVLVRDL--PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (726)
Q Consensus 188 ~~~TVlV~~I--P~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~L~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (726)
.+++|.+.|+ |.++.+ +.+++|++.|+++ |.|.+|.+.+|...-
T Consensus 19 ps~vl~L~Nm~~~~el~d-dleedl~eef~k~--G~V~~v~I~~~~~~~------------------------------- 64 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDD-DLEGEVTEECGKF--GAVNRVIIYQEKQGE------------------------------- 64 (118)
T ss_dssp SCCEEEEESCSCGGGCCT-THHHHHHHHHTTT--SCEEEEEEEEEEESS-------------------------------
T ss_pred CCCEEEEECCCCHHHHHH-HHHHHHHHHHhcc--CCEeEEEEeecCCCc-------------------------------
Confidence 5788999987 555543 5678888888876 678888877653210
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEecCHHHHHHHHhhhccCC--CCceEe
Q 004876 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (726)
Q Consensus 266 ~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v 343 (726)
. ...+..|.|||+|.+..+|..|.+.++... ...+++
T Consensus 65 --~---------------------------------------~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v 103 (118)
T 3ue2_A 65 --E---------------------------------------EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 103 (118)
T ss_dssp --S---------------------------------------TTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred --c---------------------------------------cCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 0 011345899999999999999999987653 344556
Q ss_pred ecCCC
Q 004876 344 SDAPE 348 (726)
Q Consensus 344 ~~AP~ 348 (726)
..+|+
T Consensus 104 ~~~~~ 108 (118)
T 3ue2_A 104 EVYDQ 108 (118)
T ss_dssp EEECH
T ss_pred EEcCh
Confidence 65543
No 209
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=62.95 E-value=5.1 Score=34.95 Aligned_cols=8 Identities=13% Similarity=-0.002 Sum_probs=3.4
Q ss_pred EEEEecCc
Q 004876 224 RSMVVTNN 231 (726)
Q Consensus 224 ~v~i~~d~ 231 (726)
.+.+.+..
T Consensus 73 ~~FV~F~~ 80 (118)
T 3ue2_A 73 KIFVEFSI 80 (118)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 34444433
No 210
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.90 E-value=6.4 Score=33.34 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=27.0
Q ss_pred CceEEEEecCHHHHHHHHhhhccC----CCCceEeecCCC
Q 004876 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAPE 348 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP~ 348 (726)
.+.|||+|.+.++|..|.+.+... ....+.|..|-.
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 478999999999999999876543 334566666643
No 211
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=59.86 E-value=8.4 Score=35.31 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=28.8
Q ss_pred ccCCceEEEEecCHHHHHHHHhhhccC--CCCceEeecC
Q 004876 310 EKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (726)
Q Consensus 310 ~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (726)
.+..|.|||+|.+.++|..|.+.++.. +...+.+..|
T Consensus 133 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 133 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356789999999999999999987654 3345667766
No 212
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.39 E-value=8.7 Score=32.75 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=25.8
Q ss_pred CceEEEEecCHHHHHHHHhhhccC----CCCceEeecCC
Q 004876 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 347 (726)
.|.|||+|++.++|..|.+.+... +...+.|..|.
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 589999999999999999866432 23455566553
No 213
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=58.14 E-value=6 Score=32.44 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=23.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (726)
...+||.|.|||.+.+ +++|+++|+++
T Consensus 14 ~~~~~l~V~nL~~~~t----~~~l~~~F~~~ 40 (96)
T 1fjc_A 14 RAARTLLAKNLSFNIT----EDELKEVFEDA 40 (96)
T ss_dssp TGGGEEEEESCCSSCC----HHHHHHHHCSE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhhC
Confidence 5679999999999886 78999999876
No 214
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.95 E-value=7.5 Score=33.99 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=25.6
Q ss_pred CceEEEEecCHHHHHHHHhhhcc----CCCCceEeecC
Q 004876 313 LGAALVFFTSRVAAASAAQSLHA----QLVDTWTVSDA 346 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~----~~~~~~~v~~A 346 (726)
.|.|||+|++.++|..|.+.+.. -....+.|..|
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 58999999999999999886642 13345666665
No 215
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=54.79 E-value=8.6 Score=30.70 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.6
Q ss_pred CCceEEEEecCHHHHHHHHhhhcc
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHA 335 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~ 335 (726)
..+.|||+|++.++|..|. .+..
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCC
Confidence 3799999999999999998 5544
No 216
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.19 E-value=60 Score=27.50 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=19.3
Q ss_pred ccCCCCccccH------HHHHHHHHHHHHHHHHHHHH
Q 004876 275 FLGLLGKRVDA------IEYYNEKIKEIIPKLEAEQK 305 (726)
Q Consensus 275 ~~~~~g~kvda------i~~~~~~l~~l~~~I~~~~~ 305 (726)
.|+.||..++. ++.+++++++++.++.+.++
T Consensus 49 ~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 49 KCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLID 85 (112)
T ss_dssp ECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788876553 55666666666666655443
No 217
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=45.94 E-value=15 Score=31.02 Aligned_cols=43 Identities=7% Similarity=-0.024 Sum_probs=32.4
Q ss_pred ccceEEEecC--CCCCCCC----ChHHHHHHHHHHhCCCCceEEEEecCch
Q 004876 188 QQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (726)
Q Consensus 188 ~~~TVlV~~I--P~~~~~~----~~~~~L~~~f~~~~p~~v~~v~i~~d~~ 232 (726)
.++.|.+.|+ |.++.++ +..++|++.|+++ |.|.+|.+.+|..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVD 52 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCC
Confidence 4688999998 7777651 2347888888877 7899999887753
No 218
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.53 E-value=20 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=23.5
Q ss_pred ceEEEEecCHHHHHHHHhhhccCC--CCceEeecC
Q 004876 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (726)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 346 (726)
+.+||||++.++|..|.+ +...+ ...++|+.|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 449999999999999998 54432 345666665
No 219
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.01 E-value=22 Score=31.07 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=32.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEecCc
Q 004876 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (726)
.+.-.-|.|.|+|.+..+ .+.|++.|+++ |.|..|.+.+|-
T Consensus 15 ~~~G~il~v~~l~~~~~s---redLke~F~~~--G~V~~Vd~~~g~ 55 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTC---REDLHILFSNH--GEIKWIDFVRGA 55 (121)
T ss_dssp CCCCCEEEEEESCCSSCC---HHHHHHHTCSS--CCEEEEECCTTC
T ss_pred ccCCeEEEEecCCCCcCC---HHHHHHHHHhc--CCEEEEEEecCC
Confidence 356778999999998445 89999999986 678888777654
No 220
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.69 E-value=85 Score=21.31 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=15.6
Q ss_pred cccHHHHHHHHHHHHHHHHH
Q 004876 282 RVDAIEYYNEKIKEIIPKLE 301 (726)
Q Consensus 282 kvdai~~~~~~l~~l~~~I~ 301 (726)
|.|-|.|+++++..+.++|+
T Consensus 29 kkdliaylekeianlrkkie 48 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45778888888888887775
No 221
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=35.42 E-value=8.2 Score=32.05 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.3
Q ss_pred CCceEEEEecCHHHHHHHHh
Q 004876 312 QLGAALVFFTSRVAAASAAQ 331 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q 331 (726)
..|.|||+|.+.++|..|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 46899999999999999988
No 222
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.96 E-value=1.2e+02 Score=25.30 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHhh
Q 004876 232 KEANKIYEELEGYKKKLARAEAVYAESK--SAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKIT 307 (726)
Q Consensus 232 ~~l~~L~~~~~~~~~~Le~~~~~~~~~k--~~~~~~~~rP~~r~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~ 307 (726)
.+++.|..+++++.++++..+.++.... ....+.+.+-.| +- -.....+.+-.++++++|+.++++.|.+.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH---~~--~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLH---MS--LNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEE---ES--SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeee---ec--CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888777765321 111121111111 00 11233444456778888999998888765
No 223
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.38 E-value=50 Score=26.79 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=26.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCceEEEEe
Q 004876 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (726)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (726)
...+||.|.|+ +.+ +++|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t----~~~l~~~F~~~--G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMT----PTLLRGAFSPF--GNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS--SCC----HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEcCC--CCC----HHHHHHHHhhC--CCEEEEEec
Confidence 45689999995 443 79999999987 678888774
No 224
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.03 E-value=47 Score=28.11 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=32.8
Q ss_pred ceEEEecCCCCC-CCCChHHHHHHHHHHhCCC-------CceEEEEecCch
Q 004876 190 FAVLVRDLPDLP-KGQSRKEQVDSYFKAIYPD-------TFYRSMVVTNNK 232 (726)
Q Consensus 190 ~TVlV~~IP~~~-~~~~~~~~L~~~f~~~~p~-------~v~~v~i~~d~~ 232 (726)
.|+.++|+|.++ .+++.++++++.|+++.|. +..++.+.++..
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~ 56 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNP 56 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSST
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCCh
Confidence 589999999876 4456668889999988654 456888888664
No 225
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=32.88 E-value=59 Score=29.02 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=39.9
Q ss_pred cCCceEEEEecCHHHHHHHHhhhccC------------CCC---------ceEeecCCCCCCeeeCCcCCchHHHHHHHH
Q 004876 311 KQLGAALVFFTSRVAAASAAQSLHAQ------------LVD---------TWTVSDAPESRELIWNNLNIKFFQRQIRQY 369 (726)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~------------~~~---------~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~ 369 (726)
+..|.|||.|.+..+|..|.+..... ... .......+....|.-.||...-.+..++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 45799999999999999998664321 000 011122334567788899888777777765
Q ss_pred HH
Q 004876 370 VV 371 (726)
Q Consensus 370 ~~ 371 (726)
+.
T Consensus 91 F~ 92 (158)
T 2kn4_A 91 FE 92 (158)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 226
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=32.38 E-value=34 Score=32.78 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=28.7
Q ss_pred CCceEEEEecCHHHHHHHHhhhccCC--CCceEeecCCC
Q 004876 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (726)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~ 348 (726)
..|.+||.|++.++|..|.+.+.... ...+.+..+|+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35799999999999999999987753 44566666653
No 227
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=28.89 E-value=54 Score=28.08 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=29.7
Q ss_pred ccceEEEecC--CCCCCCC----ChHHHHHHHHHHhCCCCceEEEEecCc
Q 004876 188 QQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (726)
Q Consensus 188 ~~~TVlV~~I--P~~~~~~----~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (726)
.++.|.++|+ |.+..++ +.+++|++.|+++ |.|.+|.+.+|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~ 53 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNS 53 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCC
Confidence 4678999997 5665443 3355667777766 789999887764
No 228
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=28.32 E-value=35 Score=35.61 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=20.6
Q ss_pred ceEEEEecCHHHHHHHHhhhccC
Q 004876 314 GAALVFFTSRVAAASAAQSLHAQ 336 (726)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~ 336 (726)
|.|||+|++.++|+.|.+.+...
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999987653
No 229
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.30 E-value=29 Score=29.29 Aligned_cols=39 Identities=5% Similarity=0.094 Sum_probs=27.3
Q ss_pred CccceEEEecCC--CCCCCC-----ChHHHHHHHHHHhCCCCceEEEE
Q 004876 187 PQQFAVLVRDLP--DLPKGQ-----SRKEQVDSYFKAIYPDTFYRSMV 227 (726)
Q Consensus 187 ~~~~TVlV~~IP--~~~~~~-----~~~~~L~~~f~~~~p~~v~~v~i 227 (726)
..++||+|+|+. .++.+. ..+++|+++|+++ |.|.++.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 457999999993 332210 1257899999987 68888865
No 230
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.93 E-value=73 Score=19.03 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 004876 233 EANKIYEELEGYKK 246 (726)
Q Consensus 233 ~l~~L~~~~~~~~~ 246 (726)
+|++|+++..++.+
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444333333
No 231
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.23 E-value=89 Score=26.40 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=28.1
Q ss_pred ceEEEEecCHHHHHHHHhh-hccCCCCceEeecCC--CCCCeeeCCc
Q 004876 314 GAALVFFTSRVAAASAAQS-LHAQLVDTWTVSDAP--ESRELIWNNL 357 (726)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~-~~~~~~~~~~v~~AP--~P~DIiW~NL 357 (726)
+.|.|||.+...|+.+.+. -|.-+...+.|.+.| +|+-+.-++|
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl 94 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGL 94 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecC
Confidence 8999999999999888775 333344555555533 2344444444
No 232
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.22 E-value=39 Score=22.78 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 004876 576 SCIAPLIIPFGVVYFALG 593 (726)
Q Consensus 576 s~i~Plil~~~~~yf~~~ 593 (726)
+.+.|+++.++.+||++.
T Consensus 4 ~~~l~~v~~~~ifYFl~i 21 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMIL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788888888888653
No 233
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.59 E-value=2e+02 Score=24.65 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=37.1
Q ss_pred hcCCCCCCccceEEEecCCCCCCCCChHHHHHHHHHHh---CCCCceEEEEecCch
Q 004876 180 LMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI---YPDTFYRSMVVTNNK 232 (726)
Q Consensus 180 l~~~~~~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~---~p~~v~~v~i~~d~~ 232 (726)
+.|......++|+-+-|||..+. +..++.+.+.. -+|.+.++.+.-|++
T Consensus 12 l~s~~~~~~~rtiaL~~ipDtvn----darIr~lve~~~~i~~g~i~KI~L~pDH~ 63 (117)
T 2l9w_A 12 LASRNSKELETLICLFPLSDKVS----PSLICQFLQEEIHINEKDIRKILLVSDFN 63 (117)
T ss_dssp HHCCCTTTTTSCEEEECCCTTCC----HHHHHHHHHHHTCCCTTTCSEEEEETTTT
T ss_pred HhccCCccCCcEEEEecCCCCCC----HHHHHHHHhhhhccCccceeEEEEecCCC
Confidence 44544445689999999998776 68899998876 346688888877764
No 234
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.74 E-value=1.3e+02 Score=25.29 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=15.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 004876 283 VDAIEYYNEKIKEIIPKLEAEQK 305 (726)
Q Consensus 283 vdai~~~~~~l~~l~~~I~~~~~ 305 (726)
-++++-++.+|.+++.++.+...
T Consensus 81 ~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 81 RAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888877776554
No 235
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.91 E-value=86 Score=25.81 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=30.7
Q ss_pred CCccceEEEecCCCC----CCCCChHHHHHHHHHHhCCCCceEEEEecCc
Q 004876 186 RPQQFAVLVRDLPDL----PKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (726)
Q Consensus 186 ~~~~~TVlV~~IP~~----~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (726)
.|.+=||+|.-.|.. .-+++.-.+|.+.|+++ |.|..+.++.|.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 578899999988732 22223336788888886 678888777764
No 236
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.80 E-value=49 Score=27.51 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=0.0
Q ss_pred CceEEEEecCHHHHHHHHh
Q 004876 313 LGAALVFFTSRVAAASAAQ 331 (726)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q 331 (726)
...+||||++.++|..|.+
T Consensus 58 ~d~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD 76 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH
T ss_pred cCcEEEEEcChHHHHHHHh
Done!