BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004877
(725 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a
Length = 367
Score = 255 bits (651), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 209/347 (60%), Gaps = 7/347 (2%)
Query: 376 KKHAAKDQSKGRKHKDIPTWCCVPGTPFRVDAFKY-LRGDCSHWFLTHFHMDHYQGLTRS 434
KK G + K P + +PGT F VDAF+Y + C+ +FLTHFH DHY GL++
Sbjct: 12 KKIPESSNVGGSRKKTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKH 71
Query: 435 FHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFE 494
F +YCS IT L+ K+ + + LPL+ + + G+ V L+ANHCPG+++ILF
Sbjct: 72 FTF-PVYCSEITGNLLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFY 130
Query: 495 PQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIE-A 553
NG +LHTGDFR M S+L +H L LDTTYC+P Y FP Q+ VI+F I A
Sbjct: 131 LPNGTVILHTGDFRADPSMER-SLLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTA 189
Query: 554 IQAESFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFT 613
+A + NP L + G+Y+IGKE++FL +A VL K+ ++ K++ L+CL+ + + T
Sbjct: 190 FEAVTLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEIN-SLIT 248
Query: 614 TNEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFS-KGKKKSPGRRWQ 672
T+ S +H++PM + +FK L+ + G+++ I+AF PTGWT S K + +
Sbjct: 249 TDMCSSLVHLLPMMQI-NFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQT 307
Query: 673 QGTIIRYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAM 719
+G I Y +PYSEH S+ E+K FV+++ P+ IIP+VN S + M
Sbjct: 308 KGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTM 354
>pdb|3ZDK|A Chain A, Crystal Structure Of Human 5' Exonuclease Apollo
Length = 336
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 156/322 (48%), Gaps = 38/322 (11%)
Query: 398 VPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGI 456
+P TP VD + R G +FL+H H DH GL+ ++ +YCS ITA L++ + +
Sbjct: 7 IPHTPIAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAHLLHRHLQV 65
Query: 457 PWDRLQ--------VLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFR 508
+Q VLPL++ + VT L+ANHCPGS++ LFE G +L+TGDFR
Sbjct: 66 SKQWIQALEVGESHVLPLDEIGQ-ETMTVTLLDANHCPGSVMFLFEGYFG-TILYTGDFR 123
Query: 509 FSEEMASMSVLQTCP-IHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLI 567
++ M L IHTL LD T CNP P ++ +++ I+ +P+ I
Sbjct: 124 YTPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEAAHQIVQLIRK---HPQHNIKI 180
Query: 568 GSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPMW 627
G Y++GKE L ++A + + ++ + +++ L + D+ FT E IH +
Sbjct: 181 GLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLA--DV--FTVEEKAGRIHAVDHM 236
Query: 628 TLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEHC 687
+ L+ NQ +A PT R+ + +PYS+H
Sbjct: 237 EICHSNMLR--WNQTHP----TIAILPT------------SRKIHSSHPDIHVIPYSDHS 278
Query: 688 SFTELKEFVKFVSPEHIIPSVN 709
S++EL+ FV + P ++P V+
Sbjct: 279 SYSELRAFVAALKPCQVVPIVS 300
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 419 FLTHFHMDHYQGLTRSFHH---GKIYCSLITARLVNM----KIGIPWDRLQVLPLNQK-- 469
+TH H+DH L +H+ G +YC+ T L+ + I I + LP N K
Sbjct: 239 IITHAHLDHSGFLPYLYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHV 298
Query: 470 ---------------TTIA-GIDVTCLEANHCPGSIIILFEPQNGK-AVLHTGDFRFSEE 512
T IA I +T A H GS + +G+ +++TGDF++ +
Sbjct: 299 KKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFKYEQS 358
Query: 513 MASMSVLQTCP-IHTLILDTTY 533
+ P I TL++++TY
Sbjct: 359 RLLEAAANRFPRIETLVMESTY 380
>pdb|2QKQ|A Chain A, Structure Of The Sam Domain Of Human Ephrin Type-b
Receptor 4
pdb|2QKQ|B Chain B, Structure Of The Sam Domain Of Human Ephrin Type-b
Receptor 4
Length = 83
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 237 VVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295
V E+L ++ + RYEE+F ++ + ++ EDL+ IGVT G +KKIL ++ +K +
Sbjct: 18 VGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQ 77
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 34/185 (18%)
Query: 385 KGRKHKDIPTWCCVPGTPFRVDAFKYLR----GDCSHWFLTHFHMDH------------Y 428
KGRK I C + +DA Y+ + ++HFH+DH +
Sbjct: 33 KGRK---IMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSF 89
Query: 429 QGLTRSFHHGK-IYCSLIT--ARLVNMK----------IGIPWDRLQVLPLNQKTTIAGI 475
+G T H K IY L++ ++ N+ + D+++ + ++ +AGI
Sbjct: 90 KGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGI 149
Query: 476 DVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSV-LQTCPIHTLILDTTYC 534
C A H G+ + + E G +L+TGDF E+ M+ + LI+++TY
Sbjct: 150 KFWCYHAGHVLGAAMFMIEIA-GVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG 208
Query: 535 NPLYD 539
+++
Sbjct: 209 THIHE 213
>pdb|1PK1|A Chain A, Hetero Sam Domain Structure Of Ph And Scm.
pdb|1PK1|C Chain C, Hetero Sam Domain Structure Of Ph And Scm
Length = 89
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 223 GLGRSPQKAVDVSPVVEFLHSL-GLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGP 281
G R P + V V F+ L G Y + F+++EID L L E+ L+ LGP
Sbjct: 8 GTDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAXGXKLGP 67
Query: 282 RKKILHTLCEIKK 294
+KI+ + IK+
Sbjct: 68 ARKIVAKVESIKE 80
>pdb|3SEN|A Chain A, Structure Of Caskin1 Tandem Sams
pdb|3SEN|B Chain B, Structure Of Caskin1 Tandem Sams
pdb|3SEN|C Chain C, Structure Of Caskin1 Tandem Sams
pdb|3SEN|D Chain D, Structure Of Caskin1 Tandem Sams
Length = 157
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKI 285
V ++L + L Y F+ D T+ +T EDL IGVT G RKKI
Sbjct: 21 VSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKI 69
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 240 FLHSLGLARYEEAFVR---EEIDWDTLQWLTEEDLIGIGVTALGPRKKIL---HTLCEIK 293
+L +GLA+Y + V E ID+ T +T EDL IG+T LG +KK++ L E++
Sbjct: 93 WLSMIGLAQYYKVLVDNGYENIDFITD--ITWEDLQEIGITKLGHQKKLMLAVRKLAELQ 150
Query: 294 K-EYSR 298
K EY++
Sbjct: 151 KAEYAK 156
>pdb|3SEI|A Chain A, Crystal Structure Of Caskin1 Tandem Sams
pdb|3SEI|B Chain B, Crystal Structure Of Caskin1 Tandem Sams
Length = 149
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKI 285
V ++L + L Y F+ D T+ +T EDL IGVT G RKKI
Sbjct: 13 VSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKI 61
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 240 FLHSLGLARYEEAFVR---EEIDWDTLQWLTEEDLIGIGVTALGPRKKIL---HTLCEIK 293
+L +GLA+Y + V E ID+ T +T EDL IG+T LG +KK++ L E++
Sbjct: 85 WLSMIGLAQYYKVLVDNGYENIDFITD--ITWEDLQEIGITKLGHQKKLMLAVRKLAELR 142
Query: 294 K 294
+
Sbjct: 143 R 143
>pdb|1SGG|A Chain A, The Solution Structure Of Sam Domain From The Receptor
Tyrosine Kinase Ephb2, Nmr, 10 Structures
Length = 75
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 237 VVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTL 289
V E+L ++ +++Y+E+F +D + +T ED++ +GVT G +KKIL+++
Sbjct: 13 VDEWLDAIKMSQYKESFASAGFTTFDIVSQMTVEDILRVGVTLAGHQKKILNSI 66
>pdb|2K4P|A Chain A, Solution Structure Of Ship2-Sam
Length = 86
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 240 FLHSLGLARYEEAFVREEIDWDTLQWL---TEEDLIGIGVTALGPRKKILHTL 289
+L ++GL RYEE V WD L++L TEEDL GV ++ +L TL
Sbjct: 32 WLRAIGLERYEEGLVHN--GWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTL 82
>pdb|2KSO|B Chain B, Epha2:ship2 Sam:sam Complex
Length = 76
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 240 FLHSLGLARYEEAFVREEIDWDTLQWL---TEEDLIGIGVTALGPRKKILHTL 289
+L ++GL RYEE V WD L++L TEEDL GV ++ +L TL
Sbjct: 22 WLRAIGLERYEEGLVHN--GWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTL 72
>pdb|3BQ7|A Chain A, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|B Chain B, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|C Chain C, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|D Chain D, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|E Chain E, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|F Chain F, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
Length = 81
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKK 294
V +L L L Y++ F R +I L L DL +GVT +G K+I LC IK+
Sbjct: 15 VAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRI---LCGIKE 69
>pdb|3K1R|B Chain B, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 74
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 233 DVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKIL 286
+ SP+ FL SL + + +E+ID + L ++ DL I V LGPR+KIL
Sbjct: 1 ETSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISV-PLGPREKIL 53
>pdb|1B4F|A Chain A, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|B Chain B, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|C Chain C, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|D Chain D, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|E Chain E, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|F Chain F, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|G Chain G, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|H Chain H, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1F0M|A Chain A, Monomeric Structure Of The Human Ephb2 Sam (Sterile Alpha
Motif) Domain
Length = 82
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 237 VVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTL 289
V E+L ++ + +Y+E+F +D + + ED++ +GVT G +KKIL+++
Sbjct: 14 VDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSI 67
>pdb|1KW4|A Chain A, Polyhomeotic Sam Domain Structure
Length = 89
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 223 GLGRSPQKAVDVSPVVEFLHSL-GLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGP 281
G R P + V V F+ L G Y + F+++EID L L E+ L+ LGP
Sbjct: 8 GTDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAXGXKLGP 67
Query: 282 RKKILHTLCEIKK 294
KI+ + IK+
Sbjct: 68 ALKIVAKVESIKE 80
>pdb|2EAO|A Chain A, Solution Structure Of The C-Terminal Sam-Domain Of Mouse
Ephrin Type-B Receptor 1 Precursor (Ec 2.7.1.112)
Length = 99
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 224 LGRSPQKAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTE---EDLIGIGVTALG 280
L RS + V ++L ++ + +Y ++F+ + +LQ +T+ EDL+ IG+T G
Sbjct: 12 LDRSIPDFTAFTTVDDWLSAIKMVQYRDSFLTA--GFTSLQLVTQMTSEDLLRIGITLAG 69
Query: 281 PRKKILHTLCEIKKEYSRA 299
+KKIL+++ ++ + S++
Sbjct: 70 HQKKILNSIHSMRVQISQS 88
>pdb|2F3N|A Chain A, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F3N|B Chain B, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F3N|C Chain C, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F44|A Chain A, Crystal Structure Of The Zinc-Bound Shank Sam Domain
pdb|2F44|B Chain B, Crystal Structure Of The Zinc-Bound Shank Sam Domain
pdb|2F44|C Chain C, Crystal Structure Of The Zinc-Bound Shank Sam Domain
Length = 76
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTL 289
V ++L S+ L + + F EI+ L LT+ED + +GVT +G R+ I L
Sbjct: 10 VGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERAL 62
>pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
Length = 431
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 42/226 (18%)
Query: 419 FLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIGIPWDRLQVL----------- 464
LTH H+DH L + F + G +Y + T L+ + + D L+V+
Sbjct: 56 LLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVL---EDALKVMDEPFFGPEDVE 112
Query: 465 -------PL--NQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMAS 515
PL + + + + +A H PGS ++ + G+ ++++GD + E
Sbjct: 113 EALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQ-GEGRTLVYSGDLG-NREKDV 170
Query: 516 MSVLQTCPIHTLIL-DTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGK 574
+ P+ L+L + TY + + P +E V +F+ I ++ + LI ++ + +
Sbjct: 171 LPDPSLPPLADLVLAEGTYGDRPHR-PYRETVREFL--EILEKTLSQGGKVLIPTFAVER 227
Query: 575 ERLFLEVA-----RVLRKKIYVNA-AKFRVL----KCLDFSKEDIQ 610
+ L V R+ R IY+++ RVL + + + E++Q
Sbjct: 228 AQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQ 273
>pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 42/226 (18%)
Query: 419 FLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIGIPWDRLQVL----------- 464
LTH H+DH L + F + G +Y + T L+ + + D L+V+
Sbjct: 56 LLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVL---EDALKVMDEPFFGPEDVE 112
Query: 465 -------PL--NQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMAS 515
PL + + + + +A H PGS ++ + G+ ++++GD + E
Sbjct: 113 EALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQ-GEGRTLVYSGDLG-NREKDV 170
Query: 516 MSVLQTCPIHTLIL-DTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGK 574
+ P+ L+L + TY + + P +E V +F+ I ++ + LI ++ + +
Sbjct: 171 LPDPSLPPLADLVLAEGTYGDRPHR-PYRETVREFL--EILEKTLSQGGKVLIPTFAVER 227
Query: 575 ERLFLEVA-----RVLRKKIYVNA-AKFRVL----KCLDFSKEDIQ 610
+ L V R+ R IY+++ RVL + + + E++Q
Sbjct: 228 AQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQ 273
>pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 42/226 (18%)
Query: 419 FLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIGIPWDRLQVL----------- 464
LTH H+DH L + F + G +Y + T L+ + + D L+V+
Sbjct: 56 LLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVL---EDALKVMDEPFFGPEDVE 112
Query: 465 -------PL--NQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMAS 515
PL + + + + +A H PGS ++ + G+ ++++GD + E
Sbjct: 113 EALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQ-GEGRTLVYSGDLG-NREKDV 170
Query: 516 MSVLQTCPIHTLIL-DTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGK 574
+ P+ L+L + TY + + P +E V +F+ I ++ + LI ++ + +
Sbjct: 171 LPDPSLPPLADLVLAEGTYGDRPHR-PYRETVREFL--EILEKTLSQGGKVLIPTFAVER 227
Query: 575 ERLFLEVA-----RVLRKKIYVNA-AKFRVL----KCLDFSKEDIQ 610
+ L V R+ R IY+++ RVL + + + E++Q
Sbjct: 228 AQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQ 273
>pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 42/226 (18%)
Query: 419 FLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIGIPWDRLQVL----------- 464
LTH H+DH L + F + G +Y + T L+ + + D L+V+
Sbjct: 56 LLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVL---EDALKVMDEPFFGPEDVE 112
Query: 465 -------PL--NQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMAS 515
PL + + + + +A H PGS ++ + G+ ++++GD + E
Sbjct: 113 EALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQ-GEGRTLVYSGDLG-NREKDV 170
Query: 516 MSVLQTCPIHTLIL-DTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGK 574
+ P+ L+L + TY + + P +E V +F+ I ++ + LI ++ + +
Sbjct: 171 LPDPSLPPLADLVLAEGTYGDRPHR-PYRETVREFL--EILEKTLSQGGKVLIPTFAVER 227
Query: 575 ERLFLEVA-----RVLRKKIYVNA-AKFRVL----KCLDFSKEDIQ 610
+ L V R+ R IY+++ RVL + + + E++Q
Sbjct: 228 AQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQ 273
>pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 42/226 (18%)
Query: 419 FLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIGIPWDRLQVL----------- 464
LTH H+DH L + F + G +Y + T L+ + + D L+V+
Sbjct: 56 LLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVL---EDALKVMDEPFFGPEDVE 112
Query: 465 -------PL--NQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMAS 515
PL + + + + +A H PGS ++ + G+ ++++GD + E
Sbjct: 113 EALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQ-GEGRTLVYSGDLG-NREKDV 170
Query: 516 MSVLQTCPIHTLIL-DTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGK 574
+ P+ L+L + TY + + P +E V +F+ I ++ + LI ++ + +
Sbjct: 171 LPDPSLPPLADLVLAEGTYGDRPHR-PYRETVREFL--EILEKTLSQGGKVLIPTFAVER 227
Query: 575 ERLFLEVA-----RVLRKKIYVNA-AKFRVL----KCLDFSKEDIQ 610
+ L V R+ R IY+++ RVL + + + E++Q
Sbjct: 228 AQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQ 273
>pdb|1OW5|A Chain A, Nmr Structure Of The Saccharomyces Cerevisiae Sam (Sterile
Alpha Motif) Domain
Length = 85
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 229 QKAVDVSPVVEFLHSLGLARYEEAFVR-EEIDWDTLQWLTEEDLIGIGVTALGPRKKIL 286
+K D+ V FL +G +Y ++F++ + + +++L ++ LI +GV +G R KIL
Sbjct: 10 EKTNDLPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKIL 68
>pdb|1X9X|A Chain A, Solution Structure Of Dimeric Sam Domain From Mapkkk Ste11
pdb|1X9X|B Chain B, Solution Structure Of Dimeric Sam Domain From Mapkkk Ste11
Length = 68
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 229 QKAVDVSPVVEFLHSLGLARYEEAFVR-EEIDWDTLQWLTEEDLIGIGVTALGPRKKIL 286
+K D+ V FL +G +Y ++F++ + + +++L ++ LI +GV +G R KIL
Sbjct: 2 EKTNDLPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKIL 60
>pdb|3H8M|A Chain A, Sam Domain Of Human Ephrin Type-A Receptor 7 (Epha7)
pdb|3H8M|B Chain B, Sam Domain Of Human Ephrin Type-A Receptor 7 (Epha7)
Length = 90
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 237 VVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295
V E+L ++ + RY++ F + +++ +T ED++ +G+T +G +KKI+ ++ ++ +
Sbjct: 28 VGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQ 87
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 560 NPK--TLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQW 611
NPK TL IG + G ++ VA ++ +VN+A R L+ F D+ W
Sbjct: 66 NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSA-IRFLRKYSFDGLDLDW 118
>pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
Length = 431
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 36/223 (16%)
Query: 419 FLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIG-----------IPWD----- 459
LTH H+DH L + F + G +Y + T L + + P D
Sbjct: 56 LLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLXEIVLEDALKVXDEPFFGPEDVEEAL 115
Query: 460 -RLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSV 518
L+ L + + + + +A H PGS ++ + G+ ++++GD + E +
Sbjct: 116 GHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQ-GEGRTLVYSGDLG-NREKDVLPD 173
Query: 519 LQTCPIHTLIL-DTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERL 577
P+ L+L + TY + + P +E V +F+ I ++ + LI ++ + + +
Sbjct: 174 PSLPPLADLVLAEGTYGDRPHR-PYRETVREFL--EILEKTLSQGGKVLIPTFAVERAQE 230
Query: 578 FLEVA-----RVLRKKIYVNA-AKFRVL----KCLDFSKEDIQ 610
L V R+ R IY+++ RVL + + + E++Q
Sbjct: 231 ILYVLYTHGHRLPRAPIYLDSPXAGRVLSLYPRLVRYFSEEVQ 273
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 560 NPK--TLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQW 611
NPK TL IG + G ++ VA ++ +VN+A R L+ F D+ W
Sbjct: 66 NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSA-IRFLRKYSFDGLDLDW 118
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 560 NPK--TLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQW 611
NPK TL IG + G ++ VA ++ +VN+A R L+ F D+ W
Sbjct: 66 NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSA-IRFLRKYSFDGLDLDW 118
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 560 NPK--TLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQW 611
NPK TL IG + G ++ VA ++ +VN+A R L+ F D+ W
Sbjct: 66 NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSA-IRFLRKYSFDGLDLDW 118
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 560 NPK--TLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQW 611
NPK TL IG + G ++ VA ++ +VN+A R L+ F D+ W
Sbjct: 66 NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSA-IRFLRKYSFDGLDLDW 118
>pdb|2ES6|A Chain A, Structure Of The Sam Domain Of Vts1p
pdb|2ESE|A Chain A, Structure Of The Sam Domain Of Vts1p In Complex With Rna
Length = 101
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 240 FLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKIL 286
+L SL L +Y +A W L +L +E L GV ALG R+K+L
Sbjct: 37 WLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLL 81
>pdb|2KE7|A Chain A, Nmr Structure Of The First Sam Domain From Aida1
Length = 103
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 234 VSPVVEFLHSLGLARYEEAFVREEIDWDTLQWL-----TEEDLIGIGVTALGPRKKILHT 288
V V ++L S+GL +YE + +D +Q++ ++DL+ IG+ G R++IL
Sbjct: 22 VQTVGQWLESIGLPQYENHLMAN--GFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQA 79
Query: 289 L 289
+
Sbjct: 80 I 80
>pdb|2EAM|A Chain A, Solution Structure Of The N-Terminal Sam-Domain Of A Human
Putative 47 Kda Protein
Length = 80
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 234 VSPVVEFLHSLGLARYEEAFVREEIDWDTLQWL-----TEEDLIGIGVTALGPRKKILHT 288
V V ++L S+GL +YE + +D +Q++ ++DL+ IG+ G R++IL
Sbjct: 12 VQTVGQWLESIGLPQYENHLMAN--GFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQA 69
Query: 289 L 289
+
Sbjct: 70 I 70
>pdb|2EAN|A Chain A, Solution Structure Of The N-Terminal Sam-Domain Of Human
Kiaa0902 Protein (Connector Enhancer Of Kinase
Suppressor Of Ras 2)
Length = 83
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 235 SPVVEFLHSLG--LARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTL 289
S VV+++ L L +Y + F RE+I D L +T ++L +GV+ +G ++ IL +
Sbjct: 14 SQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAV 70
>pdb|2F8K|A Chain A, Sequence Specific Recognition Of Rna Hairpins By The Sam
Domain Of Vts1
pdb|2D3D|A Chain A, Crystal Structure Of The Rna Binding Sam Domain Of
Saccharomyces Cerevisiae Vts1
Length = 88
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 240 FLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKIL 286
+L SL L +Y +A W L +L +E L GV ALG R+K+L
Sbjct: 24 WLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLL 68
>pdb|2FE9|A Chain A, Solution Structure Of The Vts1 Sam Domain In The Presence
Of Rna
Length = 86
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 240 FLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKIL 286
+L SL L +Y +A W L +L +E L GV ALG R+K+L
Sbjct: 22 WLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLL 66
>pdb|2B6G|A Chain A, Rna Recognition By The Vts1 Sam Domain
Length = 119
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 240 FLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKIL 286
+L SL L +Y +A W L +L +E L GV ALG R+K+L
Sbjct: 55 WLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLL 99
>pdb|3G1P|A Chain A, Crystals Structure Of Phnp From E.Coli K-12
pdb|3G1P|B Chain B, Crystals Structure Of Phnp From E.Coli K-12
pdb|3P2U|A Chain A, Crystal Structure Of Phnp In Complex With Orthovanadate
pdb|3P2U|B Chain B, Crystal Structure Of Phnp In Complex With Orthovanadate
Length = 258
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 407 AFKYLRGDCSHWFLTHFHMDHYQGL 431
A ++ G + LTH+HMDH QGL
Sbjct: 61 ADRWSPGSFQQFLLTHYHMDHVQGL 85
>pdb|2QAP|A Chain A, Fructose-1,6-Bisphosphate Aldolase From Leishmania
Mexicana
pdb|2QAP|B Chain B, Fructose-1,6-Bisphosphate Aldolase From Leishmania
Mexicana
pdb|2QAP|C Chain C, Fructose-1,6-Bisphosphate Aldolase From Leishmania
Mexicana
pdb|2QAP|D Chain D, Fructose-1,6-Bisphosphate Aldolase From Leishmania
Mexicana
pdb|2QDG|A Chain A, Fructose-1,6-bisphosphate Schiff Base Intermediate In Fbp
Aldolase From Leishmania Mexicana
pdb|2QDG|B Chain B, Fructose-1,6-bisphosphate Schiff Base Intermediate In Fbp
Aldolase From Leishmania Mexicana
pdb|2QDG|C Chain C, Fructose-1,6-bisphosphate Schiff Base Intermediate In Fbp
Aldolase From Leishmania Mexicana
pdb|2QDG|D Chain D, Fructose-1,6-bisphosphate Schiff Base Intermediate In Fbp
Aldolase From Leishmania Mexicana
pdb|2QDH|A Chain A, Fructose-1,6-Bisphosphate Aldolase From Leishmania
Mexicana In Complex With Mannitol-1,6-Bisphosphate, A
Competitive Inhibitor
pdb|2QDH|B Chain B, Fructose-1,6-Bisphosphate Aldolase From Leishmania
Mexicana In Complex With Mannitol-1,6-Bisphosphate, A
Competitive Inhibitor
pdb|2QDH|C Chain C, Fructose-1,6-Bisphosphate Aldolase From Leishmania
Mexicana In Complex With Mannitol-1,6-Bisphosphate, A
Competitive Inhibitor
pdb|2QDH|D Chain D, Fructose-1,6-Bisphosphate Aldolase From Leishmania
Mexicana In Complex With Mannitol-1,6-Bisphosphate, A
Competitive Inhibitor
Length = 391
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 321 RHKEASKVIVDGSSKPAANKLITDFFLGSITNVKKVSTPTNG 362
R S+V V S PA N+L T + I VKK++TP G
Sbjct: 17 RGSHMSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKG 58
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 455 GIPWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMA 514
GI W RL + + +TT G + L + +I F+ NGK + TG +F++++A
Sbjct: 336 GIGWGRLNPIA-DLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTG--QFNKDVA 392
Query: 515 SM 516
SM
Sbjct: 393 SM 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,227,901
Number of Sequences: 62578
Number of extensions: 879125
Number of successful extensions: 1958
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1920
Number of HSP's gapped (non-prelim): 49
length of query: 725
length of database: 14,973,337
effective HSP length: 106
effective length of query: 619
effective length of database: 8,340,069
effective search space: 5162502711
effective search space used: 5162502711
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)