BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004877
(725 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1
SV=1
Length = 972
Score = 276 bits (706), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 222/370 (60%), Gaps = 12/370 (3%)
Query: 348 GSITNVKKVSTPTNGQSGSRKSFSGSDRKKHAAKDQS----KGRKHKDIPTWCCVPGTPF 403
GS+ +++ V +N G SG RK +S +G + K P + +PGT F
Sbjct: 582 GSVEDLEAVEESSNKDGGDANVTSGGQRKWRKRFRESSTTDEGARKKQCPFYKKIPGTGF 641
Query: 404 RVDAFKY--LRGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRL 461
VDAF+Y + G C+ +FLTHFH DHY GLT++F +YC+ IT LV K+ + +
Sbjct: 642 TVDAFQYGEIEG-CTAYFLTHFHSDHYCGLTKNFVF-PLYCNKITGNLVKSKLRVKEQYI 699
Query: 462 QVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQT 521
VLP++ + + GI V L+ANHCPG+ +ILF +G A+LHTGDFR M L
Sbjct: 700 NVLPMDTECIVNGIKVLLLDANHCPGATMILFYLPSGTAILHTGDFRADPSMERYPALIG 759
Query: 522 CPIHTLILDTTYCNPLYDFPKQEAVIQFVIE-AIQAESFNPKTLFLIGSYTIGKERLFLE 580
IHTL LDTTYC+P Y FP Q+ VIQF + A + + NP+TL + G+Y+IGKE++FL
Sbjct: 760 QKIHTLYLDTTYCSPEYTFPSQQEVIQFAVNTAFEMVTLNPRTLVVCGTYSIGKEKVFLA 819
Query: 581 VARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPMWTLASFKRLKHMSN 640
+A VL K ++ K++ L+CL+ + + T N + +H++PM + +FK L+ N
Sbjct: 820 IAEVLGSKASMSRDKYKTLQCLESAAVN-SLITMNWDGTLLHILPMMQI-NFKGLQDHLN 877
Query: 641 QYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQ-QGTIIRYEVPYSEHCSFTELKEFVKFV 699
+++ F ++AF PTGWT+S + Q +G I Y +PYSEH S+ E+K FV+++
Sbjct: 878 KFSENFDQVLAFKPTGWTYSDSCLSVMDIKPQTRGNITIYGIPYSEHSSYLEMKRFVQWL 937
Query: 700 SPEHIIPSVN 709
P+ IIP+VN
Sbjct: 938 KPQKIIPTVN 947
>sp|Q9JIC3|DCR1A_MOUSE DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2
Length = 1026
Score = 265 bits (677), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 205/338 (60%), Gaps = 9/338 (2%)
Query: 386 GRKHKDIPTWCCVPGTPFRVDAFKY--LRGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCS 443
G + P + +PGT F VDAF+Y + G C+ +FLTHFH DHY GL++ F +YCS
Sbjct: 681 GEVRRTCPFYKRIPGTGFTVDAFQYGEIEG-CTAYFLTHFHSDHYAGLSKDFTR-PVYCS 738
Query: 444 LITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLH 503
IT L+ K+ + ++ LP++ + + + V L+ANHCPG+ +ILF+ NG +LH
Sbjct: 739 EITGNLLKKKLRVQEQYIRQLPMDTECVVDSVKVVLLDANHCPGATMILFQLPNGAVILH 798
Query: 504 TGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIE-AIQAESFNPK 562
TGDFR M S L +HTL LDTTYC+P Y FP Q+ VIQF I A +A + NP+
Sbjct: 799 TGDFRADPSM-ERSRLAGRKVHTLFLDTTYCSPEYTFPSQQEVIQFAINTAFEAVTLNPR 857
Query: 563 TLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIH 622
L + G+Y IGKE++FL +A VL K+ ++ K++ L+CL+ E TT+ +S +H
Sbjct: 858 ALVVCGTYCIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIP-EVSSLITTDMCDSLVH 916
Query: 623 VMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQ-QGTIIRYEV 681
++PM + +FK L+ + G++ I+AF PTGWT S + Q +G I Y +
Sbjct: 917 LLPMMQI-NFKGLQSHLKKCGGKYDQILAFRPTGWTHSNNITSTADIIPQTRGNISIYGI 975
Query: 682 PYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAM 719
PYSEH S+ E+K FV+++ P+ IIP+VN S N M
Sbjct: 976 PYSEHSSYLEMKRFVQWLKPQKIIPTVNVGSFRSRNTM 1013
>sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3
Length = 1040
Score = 261 bits (668), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 203/327 (62%), Gaps = 7/327 (2%)
Query: 386 GRKHKDIPTWCCVPGTPFRVDAFKY-LRGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSL 444
G + K P + +PGT F VDAF+Y + C+ +FLTHFH DHY GL++ F +YCS
Sbjct: 695 GSRKKTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHFTF-PVYCSE 753
Query: 445 ITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHT 504
IT L+ K+ + + LPL+ + + G+ V L+ANHCPG+++ILF NG +LHT
Sbjct: 754 ITGNLLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHT 813
Query: 505 GDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIE-AIQAESFNPKT 563
GDFR M S+L +H L LDTTYC+P Y FP Q+ VI+F I A +A + NP
Sbjct: 814 GDFRADPSM-ERSLLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHA 872
Query: 564 LFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHV 623
L + G+Y+IGKE++FL +A VL K+ ++ K++ L+CL+ E TT+ S +H+
Sbjct: 873 LVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIP-EINSLITTDMCSSLVHL 931
Query: 624 MPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFS-KGKKKSPGRRWQQGTIIRYEVP 682
+PM + +FK L+ + G+++ I+AF PTGWT S K + + +G I Y +P
Sbjct: 932 LPMMQI-NFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQTKGNISIYGIP 990
Query: 683 YSEHCSFTELKEFVKFVSPEHIIPSVN 709
YSEH S+ E+K FV+++ P+ IIP+VN
Sbjct: 991 YSEHSSYLEMKRFVQWLKPQKIIPTVN 1017
>sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1
PE=2 SV=1
Length = 484
Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/337 (43%), Positives = 216/337 (64%), Gaps = 14/337 (4%)
Query: 393 PTWCCVPGTPFRVDAFKY--LRGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLV 450
P + +PGTPF VDAF+Y ++G CS +FLTHFH DHY GLT+++ HG IYCS +T+RL+
Sbjct: 146 PFYKKLPGTPFTVDAFRYGCVQG-CSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLL 204
Query: 451 NMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFS 510
+ + + + L L+ + TI GI VT +EANHCPG+ +I F +G LHTGDFR S
Sbjct: 205 RLSLSVNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRAS 264
Query: 511 EEMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESF---NPKTLFLI 567
++M + +L +H L LDTTYCNP Y FP +E V+ +V+ + F PKTL ++
Sbjct: 265 KQMQTHPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRI--TKDFLRKQPKTLIVV 322
Query: 568 GSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDI-QWFTTNEHESHIHVMPM 626
GSY+IGKE ++L +A+ L KI+ NA++ R+L+ F +DI + +T+ + +HV+PM
Sbjct: 323 GSYSIGKECVYLAIAKALGVKIFANASRRRILQ--SFGWDDISKNLSTDGKATCLHVLPM 380
Query: 627 WTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSK--GKKKSPGRRWQQGTIIRYEVPYS 684
+L +RL Y ++ ++AF PTGWT+S+ G+ + +G I Y VPYS
Sbjct: 381 SSL-KVERLDEHLKIYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYS 439
Query: 685 EHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVS 721
EH SFTEL+EFV+F+ P+ IIP+VNN + M S
Sbjct: 440 EHSSFTELREFVQFLRPDKIIPTVNNGNAGTREKMQS 476
>sp|Q86KS1|DCR1_DICDI DNA cross-link repair 1 protein OS=Dictyostelium discoideum
GN=dclre1 PE=3 SV=1
Length = 920
Score = 229 bits (584), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 133/359 (37%), Positives = 202/359 (56%), Gaps = 27/359 (7%)
Query: 373 SDRKKHAAKDQSKGR---------KHKDIP-TWCCVPGTPFRVDAFKYLRGDCSHWFLTH 422
SD KK K+++K R K K IP ++ + GT F VD F+Y D +H+FLTH
Sbjct: 232 SDLKK-TGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTH 290
Query: 423 FHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEA 482
FH DHY G+T+++ G IYC+ T +LV+ K+G+ + N+ I G+ V L++
Sbjct: 291 FHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDS 350
Query: 483 NHCPGSIIILF---------EPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTY 533
NHCPGS +ILF E +++LHTGDFR+++ M + +L+ I L LD TY
Sbjct: 351 NHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTY 410
Query: 534 CNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVNA 593
C+P Y FP Q +I+ V ++ E+ + +TLFL G+Y IGKER+ LE+A+ K ++V+
Sbjct: 411 CDPQYVFPPQPEIIKQVASIVRKEN-DGETLFLFGTYVIGKERILLEIAKQEGKPVHVSN 469
Query: 594 AKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFS 653
K+ +L CL + DI FTTNE + + M ++ S+ + + + ++ ++ F
Sbjct: 470 EKYAILCCLS-TCLDINKFTTNELITPFRAVTM-SMLSYHNMLSLLDSSNNKYKRVIGFR 527
Query: 654 PTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDG 712
PTGWT +K R G Y V YSEH SF EL++ + P IIP+V+ D
Sbjct: 528 PTGWTQAKKSITYLNR----GPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDS 582
>sp|Q10264|PSO2_SCHPO DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3
Length = 560
Score = 192 bits (488), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 183/356 (51%), Gaps = 30/356 (8%)
Query: 392 IPTWCCVP-GTPFRVDAFKYLRGD-CSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARL 449
+P + +P PF VDAF Y D +FL+HFH DHY GLT + HG IYCS +T L
Sbjct: 183 VPFYKLMPYNIPFAVDAFAYGAIDGVEAYFLSHFHSDHYGGLTPKWKHGPIYCSEVTGNL 242
Query: 450 VNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFE---PQNGKAVLHTGD 506
+ + + ++ L LNQ I GI V L+ANHCPGS + +FE + VLH GD
Sbjct: 243 LINVMHVDEQYVKRLKLNQPYNIMGITVYVLDANHCPGSAMFVFETLQSNQTRRVLHCGD 302
Query: 507 FRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIE-AIQ-AESFNPKTL 564
FR S++ VL+ IH + LDTTY NP Y FP Q V+Q + AI +S + + L
Sbjct: 303 FRASKDHVMHPVLREKTIHKVYLDTTYLNPKYTFPPQADVVQACADKAISIKKSTDSRLL 362
Query: 565 FLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVM 624
++ +Y+IGKE++ + +A+ L +IYV K ++K L+ +++ I T + ++ +H++
Sbjct: 363 VVVSTYSIGKEKVAVAIAKSLSSRIYVVPRKMHIIKQLE-NQDLIDLLTDDPTQASVHMV 421
Query: 625 PMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSP----------------- 667
M + L ++ QY F I+ + TGWTF + ++
Sbjct: 422 TMMGIHPNSLLDYLE-QYNSSFDKIIGYKVTGWTFQPLENRAQLSSSLDSIISRPPKFVE 480
Query: 668 ----GRRWQQGTIIRYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAM 719
R + + PYSEH SF +L F ++ HIIP+VN + S M
Sbjct: 481 YDLRAIRGSTDKVAAFVAPYSEHSSFYDLTMFCLSMNIGHIIPTVNVGSQRSREKM 536
>sp|P30620|PSO2_YEAST DNA cross-link repair protein PSO2/SNM1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PSO2 PE=1 SV=1
Length = 661
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 190/410 (46%), Gaps = 100/410 (24%)
Query: 400 GTPFRVDAFKYLRGDC-SHWFLTHFHMDHYQGLTRSFHH-------GKIYCSLITARLVN 451
G VD F Y + S +FL+HFH DHY GL +S+++ +YCS ITA LVN
Sbjct: 225 GHEIVVDGFNYKASETISQYFLSHFHSDHYIGLKKSWNNPDENPIKKTLYCSKITAILVN 284
Query: 452 MKIGIPWDRLQVLPLNQKTTIAG-IDVTCLEANHCPGSIIILFEP-------QNGKAVLH 503
+K IP D +Q+LP+N++ I I V L+ANHCPG+II+LF+ + + +LH
Sbjct: 285 LKFKIPMDEIQILPMNKRFWITDTISVVTLDANHCPGAIIMLFQEFLANSYDKPIRQILH 344
Query: 504 TGDFRFSEEMAS-----MSVLQTCPIHTLILDTTYCNPLYDFPKQ----EAVIQFVIEAI 554
TGDFR + +M ++ I + LDTTY Y+FP Q E V F + I
Sbjct: 345 TGDFRSNAKMIETIQKWLAETANETIDQVYLDTTYMTMGYNFPSQHSVCETVADFTLRLI 404
Query: 555 Q----------------------AESFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYV- 591
+ + + LFL+G+YTIGKE+L +++ L+ K++V
Sbjct: 405 KHGKNKTFGDSQRNLFHFQRKKTLTTHRYRVLFLVGTYTIGKEKLAIKICEFLKTKLFVM 464
Query: 592 -NAAKFRVLKCLDFSKE------DIQWFTTNEHESHIHVMPMWTLAS-------FKRLKH 637
N+ KF ++ + + E D T+N HES +H++P+ L S K LK
Sbjct: 465 PNSVKFSMMLTVLQNNENQNDMWDESLLTSNLHESSVHLVPIRVLKSQETIEAYLKSLKE 524
Query: 638 MSNQYAGRFSLIVAFSPTGWTFSKG----KKKSPGRRWQQG------------------- 674
+ Y +V F PTGW+ + G KK G
Sbjct: 525 LETDYVKDIEDVVGFIPTGWSHNFGLKYQKKNDDDENEMSGNTEYCLELMKNDRDNDDEN 584
Query: 675 -----TIIR----------YEVPYSEHCSFTELKEFVKFVSPEHIIPSVN 709
+I+R + VPYSEH SF +L +F + +IP+VN
Sbjct: 585 GFEISSILRQYKKYNKFQVFNVPYSEHSSFNDLVKFGCKLKCSEVIPTVN 634
>sp|Q5QJC3|DCR1B_CHICK 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1
Length = 457
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 159/321 (49%), Gaps = 39/321 (12%)
Query: 398 VPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGI 456
+PGTP VD + R G +FL+H H DH GL+ ++ +YCS +TARL++ ++ +
Sbjct: 6 IPGTPIAVDFWSVRRAGGARLFFLSHMHSDHTVGLSSTWSR-PLYCSPLTARLLHHRLKV 64
Query: 457 PWDRLQVLPLNQKTTIAG-IDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMAS 515
P ++ L + Q + + VT L+ANHCPGS++ LFE G +L+TGDFR+S M
Sbjct: 65 PTRWIRPLEVGQSHAVGEEVTVTLLDANHCPGSVMFLFEGAFG-TILYTGDFRYSPAMQR 123
Query: 516 MSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKE 575
L I L LD T C P P + + ++A Q +P+ +IG Y++GKE
Sbjct: 124 EPALSGRRIDRLYLDNTNCRPHGALPSRS---RAALQAAQLIRRHPQHRVVIGVYSLGKE 180
Query: 576 RLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPM----W-TLA 630
L +++A + V+ ++ ++ L+ + FTT E IH + + W TL
Sbjct: 181 ELLVDLALEFGTWVVVSPSRLEQMRLLELPEV----FTTEEGAGRIHAVDVAEIRWDTLV 236
Query: 631 SFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEHCSFT 690
S+ L +A PTG + + +PYS+H SF+
Sbjct: 237 SWNVLHPT-----------IAILPTGRPVKVTHPQI------------HLIPYSDHSSFS 273
Query: 691 ELKEFVKFVSPEHIIPSVNND 711
EL EFVK++ P +IP V D
Sbjct: 274 ELCEFVKWLKPCSVIPIVKGD 294
>sp|B0V2S2|DCR1B_DANRE 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1
Length = 571
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 158/324 (48%), Gaps = 39/324 (12%)
Query: 398 VPGTPFRVDAFKYLRGDCSH---WFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKI 454
+P TP VD ++ + C H +FL+H H DH GL+ ++ H IYCS +TA+L+ +K+
Sbjct: 6 LPDTPIAVDCWQLRK--CLHVRLFFLSHMHSDHTCGLSSTWSHRPIYCSPLTAKLLRLKL 63
Query: 455 GIPWDRLQVLPLNQKTTIAGID-------VTCLEANHCPGSIIILFEPQNGKAVLHTGDF 507
I ++ L + Q + D V ++ANHCPG+++ LF+ G L+TGDF
Sbjct: 64 QIKQKWIRPLEIGQDHMLMLDDLGKERLTVNLIDANHCPGAVMFLFQGYFGTR-LYTGDF 122
Query: 508 RFSEEMASMSVLQT-CPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFL 566
R++ M + LQ I L LD T C+P P ++ Q + + I+ +P +
Sbjct: 123 RYTPSMLRVPCLQNHINIDVLYLDNTNCDPTRALPSRQQATQQIKQIIRD---HPGYAVV 179
Query: 567 IGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPM 626
IG Y++GKE L +++A + + V+ + L+ L D+ FTT+ I V+
Sbjct: 180 IGLYSLGKESLLVDLAMEFKTWVEVDRERLETLRVLQL--PDV--FTTDSGAGRIRVV-- 233
Query: 627 WTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEH 686
NQ S ++A++ T + P Y VPYS+H
Sbjct: 234 -------------NQSMISASNLMAWNKLQSTIAILPTSRPMVSCHPNV---YVVPYSDH 277
Query: 687 CSFTELKEFVKFVSPEHIIPSVNN 710
S+ EL++FV +SP ++P V N
Sbjct: 278 SSYQELEDFVSALSPISLVPIVGN 301
>sp|D2H8V8|DCR1B_AILME 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3
SV=1
Length = 529
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 161/324 (49%), Gaps = 38/324 (11%)
Query: 396 CCVPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKI 454
+P TP VD + R G +FL+H H DH GL+ ++ +YCS ITA LV+ +
Sbjct: 4 ALIPHTPIAVDFWSLRRAGSARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAYLVHRHL 62
Query: 455 GIP--WDRL------QVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGD 506
+P W R VLPL++ + VT ++ANHCPGS++ LFE G +L+TGD
Sbjct: 63 QVPKEWIRALEVGESHVLPLDE-IGRETMTVTLMDANHCPGSVMFLFEGYFG-TILYTGD 120
Query: 507 FRFSEEMASMSVLQTCP-IHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLF 565
FR++ M L+ IHTL LD T CNP + P ++ + ++E I+ +P+
Sbjct: 121 FRYTPSMLKEPALKLGKQIHTLYLDNTNCNPAWVLPSRQEAARQIVELIRK---HPQHNI 177
Query: 566 LIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMP 625
IG Y++GKE L ++A + + ++ + +++ L + D+ FT E IH +
Sbjct: 178 KIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLA--DV--FTLEEKAGRIHAV- 232
Query: 626 MWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSE 685
+ H + + + +A PT R+ + + +PYS+
Sbjct: 233 -----DHMEICHSAMLHWNQTHPTIAILPT------------SRKIHRSHPDIHIIPYSD 275
Query: 686 HCSFTELKEFVKFVSPEHIIPSVN 709
H S++EL+ FV + P ++P V+
Sbjct: 276 HSSYSELRTFVAALKPCQVVPIVS 299
>sp|Q8C7W7|DCR1B_MOUSE 5' exonuclease Apollo OS=Mus musculus GN=Dclre1b PE=1 SV=2
Length = 541
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 160/323 (49%), Gaps = 38/323 (11%)
Query: 398 VPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGI 456
+P TP VD + R G +FLTH H DH GL+ ++ +YCS ITA L++ ++ +
Sbjct: 6 IPQTPIAVDFWSLRRAGSARLFFLTHMHCDHTVGLSSTWAR-PLYCSPITACLLHRRLQV 64
Query: 457 P--WDRL------QVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFR 508
W R VLPL++ + VT ++ANHCPGS++ LFE G +L+TGDFR
Sbjct: 65 SKHWIRALEVGESHVLPLDEIGQ-ETMTVTLIDANHCPGSVMFLFEGYFG-TILYTGDFR 122
Query: 509 FSEEMASMSVLQTCP-IHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLI 567
++ M L IHTL LD T CNP P ++ Q +++ I+ P+ I
Sbjct: 123 YTPSMLKEPALILGKQIHTLYLDNTNCNPALVLPSRQEATQQIVQLIRQ---FPQHNIKI 179
Query: 568 GSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPMW 627
G Y++GKE L ++A R + ++ + +++ L + D+ FT E IH +
Sbjct: 180 GLYSLGKESLLEQLALEFRTWVVLSPQRLELVQLLGLA--DV--FTVEEEAGRIHAV--- 232
Query: 628 TLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEHC 687
+ H + + +A PT K +SP +I Y VPYS+H
Sbjct: 233 ---DHTEICHSAMLQWNQSHPTIAIFPTS-----RKVRSP-----HPSI--YTVPYSDHS 277
Query: 688 SFTELKEFVKFVSPEHIIPSVNN 710
S++EL+ FV + P ++P V+
Sbjct: 278 SYSELRAFVAALRPCQVVPIVHQ 300
>sp|Q4KLY6|DCR1B_RAT 5' exonuclease Apollo OS=Rattus norvegicus GN=Dclre1b PE=2 SV=2
Length = 541
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 157/320 (49%), Gaps = 36/320 (11%)
Query: 398 VPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGI 456
+P TP VD + R G +FL+H H DH GL+ ++ +YCS ITA L++ ++ +
Sbjct: 6 IPQTPIAVDFWSLRRAGTARLFFLSHMHCDHTVGLSSTWAR-PLYCSPITAHLLHRRLQV 64
Query: 457 PWDRLQVLPLNQKTTIA-------GIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRF 509
++ L + + + + VT ++ANHCPGS++ LFE G +L+TGDFR+
Sbjct: 65 SKQWIRALEIGESHVLLLDEIGQETMTVTLIDANHCPGSVMFLFEGYFG-TILYTGDFRY 123
Query: 510 SEEMASMSVLQTCP-IHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIG 568
+ M L IHTL LD T CNP P ++ Q +I+ I+ P+ IG
Sbjct: 124 TPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEATQQIIQLIRQ---FPQHNIKIG 180
Query: 569 SYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPMWT 628
Y++GKE L ++A + + ++ + +++ L + D+ FT E IH +
Sbjct: 181 LYSLGKESLLEQLALEFQTWVVLSPQRLELVQLLGLA--DV--FTVEEEAGRIHAV---- 232
Query: 629 LASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEHCS 688
+ H + + +A PT K +SP +I Y +PYS+H S
Sbjct: 233 --DHMEICHSAMLQWNQTHPTIAIFPT-----SRKIRSP-----HPSI--YSIPYSDHSS 278
Query: 689 FTELKEFVKFVSPEHIIPSV 708
++EL+ FV + P ++P V
Sbjct: 279 YSELRAFVAALRPCQVVPIV 298
>sp|Q9H816|DCR1B_HUMAN 5' exonuclease Apollo OS=Homo sapiens GN=DCLRE1B PE=1 SV=1
Length = 532
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 154/323 (47%), Gaps = 36/323 (11%)
Query: 396 CCVPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKI 454
+P TP VD + R G +FL+H H DH GL+ ++ +YCS ITA L++ +
Sbjct: 4 VLIPHTPIAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAHLLHRHL 62
Query: 455 GIPWDRLQVLPLNQKTTIA-------GIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDF 507
+ +Q L + + + + VT L+ANHCPGS++ LFE G +L+TGDF
Sbjct: 63 QVSKQWIQALEVGESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFG-TILYTGDF 121
Query: 508 RFSEEMASMSVLQTCP-IHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFL 566
R++ M L IHTL LD T CNP P ++ +++ I+ +P+
Sbjct: 122 RYTPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEAAHQIVQLIRK---HPQHNIK 178
Query: 567 IGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPM 626
IG Y++GKE L ++A + + ++ + +++ L + D+ FT E IH +
Sbjct: 179 IGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLA--DV--FTVEEKAGRIHAVDH 234
Query: 627 WTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEH 686
+ L+ NQ +A PT R+ + +PYS+H
Sbjct: 235 MEICHSNMLR--WNQTHP----TIAILPT------------SRKIHSSHPDIHVIPYSDH 276
Query: 687 CSFTELKEFVKFVSPEHIIPSVN 709
S++EL+ FV + P ++P V+
Sbjct: 277 SSYSELRAFVAALKPCQVVPIVS 299
>sp|Q5QJC2|DCR1C_CHICK Protein artemis OS=Gallus gallus GN=DCLRE1C PE=2 SV=1
Length = 714
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 158/336 (47%), Gaps = 42/336 (12%)
Query: 405 VDAFKYLRGDCSHWFLTHFHMDHYQGL--------TRSFHHGKIYCSLITARLV--NMKI 454
+D F Y +FL+H H DH +GL +S K+YCS +T L+ N K
Sbjct: 16 IDRFDYDNLRARAYFLSHCHKDHMKGLRAPALRRRLQSSLKVKLYCSPVTKELLLTNSKY 75
Query: 455 GIPWDRLQVLPLNQKTTIAGID----------VTCLEANHCPGSIIILFEPQNGKAVLHT 504
+ + L + T I+ +D VT L A HCPGS++ LF+ +NG VL+T
Sbjct: 76 AFWENHIVALEVETPTQISLVDETTGEKEDIEVTLLPAGHCPGSVMFLFQGENG-TVLYT 134
Query: 505 GDFRFSE-EMASMSVLQTCP----IHTLILDTTYCNP-LYDFPKQEAVIQFVIEAIQAES 558
GDFR ++ E A M +L + I ++ LDTT+C+P Y P +E + ++E +++ +
Sbjct: 135 GDFRLAKGEAARMELLHSGTSVKDIQSVYLDTTFCDPRFYHIPSREECLSGILELVRSWT 194
Query: 559 FNPK--TLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNE 616
+ ++L G E LF+ ++ L K++VN K + K + +I + T +
Sbjct: 195 TLSRYHVVWLNCKAAYGYEYLFINLSEELGIKVHVN--KLDMFKNM----PEILYHITTD 248
Query: 617 HESHIHVMPMWTLASFKRLKHM----SNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQ 672
+ IH + R + + Q +I T W + KK + R
Sbjct: 249 RYTQIHACRHPKDDDYVRGNRLPCGITCQNGTPLHVISIKPSTMWFGERIKKTNVIVRTG 308
Query: 673 QGTIIRYEVPYSEHCSFTELKEFVKFVSPEHIIPSV 708
+ T Y +S H S++E+ +F+ ++ P ++ P+V
Sbjct: 309 EST---YRACFSFHSSYSEIMDFLSYIRPVNVYPNV 341
>sp|Q5XIX3|DCR1C_RAT Protein artemis OS=Rattus norvegicus GN=Dclre1c PE=2 SV=1
Length = 698
Score = 99.4 bits (246), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 159/340 (46%), Gaps = 50/340 (14%)
Query: 405 VDAFKYLRGDCSHWFLTHFHMDHYQGLTRSFHHGKI--------YCSLITARLV--NMKI 454
+D F +FL+H H DH +GL ++ YCS +T L+ + K
Sbjct: 16 IDRFDRENLKARAYFLSHCHKDHMKGLRAPSMKRRLECSLKVFLYCSPVTKELLLTSPKY 75
Query: 455 GIPWDRLQVLPLNQKTTIAGID----------VTCLEANHCPGSIIILFEPQNGKAVLHT 504
+R+ + + T ++ +D VT L A HCPGS++ LF+ NG VL+T
Sbjct: 76 KFWENRIIAIEIETPTQVSLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNG-TVLYT 134
Query: 505 GDFRFSE-EMASMSVLQTC----PIHTLILDTTYCNP-LYDFPKQEAVIQFVIEAIQAE- 557
GDFR ++ E++ M +L + I ++ LDTT+C+P Y P +E ++ V+E +++
Sbjct: 135 GDFRLAKGEVSRMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREECLRGVLELVRSWI 194
Query: 558 SFNPK-TLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNE 616
+ +PK ++L G E LF ++ L +++V+ K + K + DI T +
Sbjct: 195 TRSPKHVVWLNCKAAYGYEYLFTNLSEELGVQVHVD--KLDMFKNM----PDILHHLTTD 248
Query: 617 HESHIHVMPMWTLASFKRLKHMSNQYAGRFSLI---VAFSPTGWTFSKGKKKSPGRRWQQ 673
+ IH + + + A + + ++ P+ F + +K+
Sbjct: 249 RNTQIHACRHPKAEEYFQWNKLPCGMASKTKTVLHTISIKPSTMWFGERTRKT------- 301
Query: 674 GTIIR-----YEVPYSEHCSFTELKEFVKFVSPEHIIPSV 708
I+R Y +S H S++E+K+F+ ++ P + P+V
Sbjct: 302 NVIVRTGESSYRACFSFHSSYSEIKDFLSYICPVNAYPNV 341
>sp|Q5RGE5|DCR1C_DANRE Protein artemis OS=Danio rerio GN=dclre1c PE=2 SV=1
Length = 639
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 147/327 (44%), Gaps = 50/327 (15%)
Query: 418 WFLTHFHMDHYQGLT-----RSFHHG---KIYCSLITARLV--NMKIGIPWDRLQVLPLN 467
+FL+H H DH +GL R K+YCS +T L+ N + D + L L+
Sbjct: 29 YFLSHCHKDHMKGLKGPLLKRKLKFSLTVKLYCSYVTKELLLSNPRYAFWEDHIVPLELD 88
Query: 468 QKTTIAGID----------VTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFS-EEMASM 516
T+I+ ID VT L A HCPGS++ LFE G VL+TGDFR + + A M
Sbjct: 89 SPTSISLIDESTGETEDVVVTLLSAGHCPGSVMFLFEGAKG-TVLYTGDFRLAVGDAARM 147
Query: 517 SVLQTC----PIHTLILDTTYCNP-LYDFPKQEAVI----QFVIEAIQAESFNPKTLFLI 567
L + I ++ +DTT+ +P Y P +EA + Q V + I ++ L
Sbjct: 148 EYLHSGDRVKDIQSVYIDTTFFDPKYYQIPSREACLAGIQQLVQDWICQSPYHVVWLNCK 207
Query: 568 GSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKE--DIQWFTTNEHESHIHVMP 625
+Y G E LF + + +I+VN+ LD K+ +I T + IH
Sbjct: 208 AAY--GYEYLFTNLGQEFNSQIHVNS--------LDMFKKMPEILCHVTTNRATQIHACR 257
Query: 626 MWTLASFKRLKHM---SNQYAGRFSLIVAFSP-TGWTFSKGKKKSPGRRWQQGTIIRYEV 681
F R + S G I++ P T W + +K S + + Y
Sbjct: 258 HPKDEEFFRANRLPCGSTAPDGIPLNIISIKPSTIWFGERTRKTSVVVKMGSSS---YRA 314
Query: 682 PYSEHCSFTELKEFVKFVSPEHIIPSV 708
+S H S+ E+K+F+ ++ P +I P+V
Sbjct: 315 CFSFHSSYLEVKDFLSYICPVNIYPNV 341
>sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c PE=2 SV=2
Length = 705
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 156/340 (45%), Gaps = 50/340 (14%)
Query: 405 VDAFKYLRGDCSHWFLTHFHMDHYQGLTRSFHHGKI--------YCSLITARLV--NMKI 454
+D F +FL+H H DH +GL ++ YCS +T L+ + K
Sbjct: 16 IDRFDRENLKARAYFLSHCHKDHMKGLRAPSLKRRLECSLKVFLYCSPVTKELLLTSPKY 75
Query: 455 GIPWDRLQVLPLNQKTTIAGID----------VTCLEANHCPGSIIILFEPQNGKAVLHT 504
+R+ + + T I+ +D VT L A HCPGS++ LF+ NG VL+T
Sbjct: 76 RFWENRIITIEIETPTQISLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNG-TVLYT 134
Query: 505 GDFRFSE-EMASMSVLQTC----PIHTLILDTTYCNP-LYDFPKQEAVIQFVIEAIQA-E 557
GDFR ++ E + M +L + I ++ LDTT+C+P Y P +E ++ ++E +++
Sbjct: 135 GDFRLAKGEASRMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREQCLRGILELVRSWV 194
Query: 558 SFNP-KTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNE 616
+ +P ++L G E LF ++ L +++V+ K + K + DI T +
Sbjct: 195 TRSPHHVVWLNCKAAYGYEYLFTNLSEELGVQVHVD--KLDMFKNM----PDILHHLTTD 248
Query: 617 HESHIHVMP--------MWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPG 668
+ IH W K +++Q I T W + +K +
Sbjct: 249 RNTQIHACRHPKAEECFQWN----KLPCGITSQNKTALHTISIKPSTMWFGERTRKTNVI 304
Query: 669 RRWQQGTIIRYEVPYSEHCSFTELKEFVKFVSPEHIIPSV 708
R + + Y +S H SF+E+K+F+ ++ P ++ P+V
Sbjct: 305 VRTGESS---YRACFSFHSSFSEIKDFLSYICPVNVYPNV 341
>sp|Q96SD1|DCR1C_HUMAN Protein artemis OS=Homo sapiens GN=DCLRE1C PE=1 SV=2
Length = 692
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 154/341 (45%), Gaps = 52/341 (15%)
Query: 405 VDAFKYLRGDCSHWFLTHFHMDHYQGLTRSFHHGKI--------YCSLITARLV--NMKI 454
+D F +FL+H H DH +GL ++ YCS +T L+ + K
Sbjct: 16 IDRFDRENLRARAYFLSHCHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKELLLTSPKY 75
Query: 455 GIPWDRLQVLPLNQKTTIAGID----------VTCLEANHCPGSIIILFEPQNGKAVLHT 504
R+ + + T I+ +D VT L A HCPGS++ LF+ NG VL+T
Sbjct: 76 RFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNNG-TVLYT 134
Query: 505 GDFRFSE-EMASMSVLQTC----PIHTLILDTTYCNP-LYDFPKQEAVIQFVIEAIQAE- 557
GDFR ++ E A M +L + I ++ LDTT+C+P Y P +E + V+E +++
Sbjct: 135 GDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWI 194
Query: 558 SFNP-KTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAK-FRVLKCLDFSKEDIQWFTTN 615
+ +P ++L G E LF ++ L +++VN FR + +I T
Sbjct: 195 TRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVNKLDMFRNMP-------EILHHLTT 247
Query: 616 EHESHIHVMPMWTLASFKRLKHMSNQYAGRFSL---IVAFSPTGWTFSKGKKKSPGRRWQ 672
+ + IH + + + R + I++ P+ F + +K+
Sbjct: 248 DRNTQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMWFGERSRKT------ 301
Query: 673 QGTIIR-----YEVPYSEHCSFTELKEFVKFVSPEHIIPSV 708
I+R Y +S H S++E+K+F+ ++ P + P+V
Sbjct: 302 -NVIVRTGESSYRACFSFHSSYSEIKDFLSYLCPVNAYPNV 341
>sp|Q5R6Z9|DCR1C_PONAB Protein artemis OS=Pongo abelii GN=DCLRE1C PE=2 SV=1
Length = 692
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 52/341 (15%)
Query: 405 VDAFKYLRGDCSHWFLTHFHMDHYQGLTRSFHHGKI--------YCSLITARLV--NMKI 454
+D F +FL+H H DH +GL ++ YCS +T L+ + K
Sbjct: 16 IDRFDRENLRARAYFLSHCHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKELLLTSPKY 75
Query: 455 GIPWDRLQVLPLNQKTTIAGID----------VTCLEANHCPGSIIILFEPQNGKAVLHT 504
R+ + + T I+ +D VT L A HCPGS++ LF+ NG VL+T
Sbjct: 76 RFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNNG-TVLYT 134
Query: 505 GDFRFSE-EMASMSVLQTC----PIHTLILDTTYCNP-LYDFPKQEAVIQFVIEAIQAE- 557
GDFR ++ E A M +L + I ++ LDTT+C+P Y P +E + ++E +++
Sbjct: 135 GDFRLAQGEAARMELLHSGGRIKDIQSVYLDTTFCDPRFYQIPSREECLSGILELVRSWI 194
Query: 558 SFNP-KTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAK-FRVLKCLDFSKEDIQWFTTN 615
+ +P ++L G E LF ++ L +++VN FR + +I T
Sbjct: 195 TRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVNKLDMFRNMP-------EILHHLTT 247
Query: 616 EHESHIHVMPMWTLASFKRLKHMSNQYAGRFSL---IVAFSPTGWTFSKGKKKSPGRRWQ 672
+ + IH + + + R + I++ P+ F + +K+
Sbjct: 248 DRNTQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMWFGERSRKT------ 301
Query: 673 QGTIIR-----YEVPYSEHCSFTELKEFVKFVSPEHIIPSV 708
I+R Y +S H S++E+K+F+ ++ P + P+V
Sbjct: 302 -NVIVRTGESSYRACFSFHSSYSEIKDFLSYLCPVNAYPNV 341
>sp|B1ZZL9|DNLI_OPITP Probable DNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1)
GN=lig PE=3 SV=1
Length = 1017
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 40/296 (13%)
Query: 419 FLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQ-VLPLNQKTTI-AGID 476
F++H H DH + H +I CS TA L+ ++ R++ VLP Q + A
Sbjct: 30 FVSHAHSDH------TATHDEILCSAGTAALMRARLDA--KRIEHVLPFGQTEQLTADCG 81
Query: 477 VTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNP 536
VT A H GS L E ++L+TGDF+ S T +I++TT+ P
Sbjct: 82 VTLHPAGHIFGSAQCLLEHGEHGSLLYTGDFKLRRGR-SAEPCATPHAELVIMETTFGRP 140
Query: 537 LYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKF 596
Y FP V+ I E+ + ++ Y++GK + L + + ++
Sbjct: 141 HYVFPPTAQVLN-DIATFCHETIADDGVPVLFGYSLGKSQELLCSLEESQLPVMLHPQTH 199
Query: 597 ---RVLKCLDFSKEDIQWFTTNEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFS 653
RV + + + F H+ + P + R + G + ++
Sbjct: 200 KLTRVYEQFGIAFPPYREFDLATVRGHVVICPPQS-----RESAFVRRIPGHRTAMI--- 251
Query: 654 PTGWTFSKGKKKSPGRRWQQGTIIRYE----VPYSEHCSFTELKEFVKFVSPEHII 705
TGW G I RY+ P S+H + +L FV+ V+P+ ++
Sbjct: 252 -TGWAMDP------------GAIYRYQCDAAFPLSDHADYQDLLRFVEAVNPQRVL 294
>sp|Q9H694|BICC1_HUMAN Protein bicaudal C homolog 1 OS=Homo sapiens GN=BICC1 PE=1 SV=2
Length = 974
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 239 EFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298
E LGL +Y + F ++EID T LT++DL +G+T G R+K+L + E+ K +
Sbjct: 880 ELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELNKNRRK 939
Query: 299 AVES 302
ES
Sbjct: 940 LFES 943
>sp|Q5U4T7|BIC1B_XENLA Protein bicaudal C homolog 1-B OS=Xenopus laevis GN=bicc1-b PE=2
SV=1
Length = 970
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 235 SPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKK 294
S + E LGL +Y + F ++EID T LT++DL +G+T G R+K+L + E+ K
Sbjct: 872 SDLPELFSKLGLGKYTDIFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELNK 931
Query: 295 EYSRAVE 301
+ E
Sbjct: 932 NRRKLFE 938
>sp|Q99MQ1|BICC1_MOUSE Protein bicaudal C homolog 1 OS=Mus musculus GN=Bicc1 PE=2 SV=1
Length = 977
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 239 EFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298
E LGL +Y + F ++EID T LT++DL +G+T G R+K+L + E+ K +
Sbjct: 882 ELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELSKNRRK 941
Query: 299 AVE 301
E
Sbjct: 942 LFE 944
>sp|Q9IA00|BIC1A_XENLA Protein bicaudal C homolog 1-A OS=Xenopus laevis GN=bicc1-a PE=2
SV=1
Length = 963
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 235 SPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKK 294
S + E LGL +Y + F ++EID T LT++DL +G++ G R+K+L + E+ K
Sbjct: 865 SDLPELFSKLGLGKYTDIFQQQEIDLQTFLTLTDQDLKELGISTFGARRKMLLAISELNK 924
Query: 295 EYSRAVE-SNKDAHVSNDGSSSYHGSERHKEASKV 328
+ E +N A G+S + H + + V
Sbjct: 925 NRRKLFEPTNIRASFLEGGASGRLPRQYHTDIASV 959
>sp|Q60355|Y047_METJA Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0047 PE=3 SV=2
Length = 428
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 33/175 (18%)
Query: 414 DCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVN----------MKIG------IP 457
D F++H H+DH L FH K+ +IT L +KI IP
Sbjct: 49 DVDKVFISHAHLDHSGALPVLFHR-KMDVPVITTELSKKLIKVLLKDMVKIAETENKKIP 107
Query: 458 WDRLQV-------LPLN--QKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFR 508
++ V +PLN K A H PGS IL QN K +L+TGD +
Sbjct: 108 YNNHDVKEAIRHTIPLNYNDKKYYKDFSYELFSAGHIPGSASILLNYQNNKTILYTGDVK 167
Query: 509 FSE----EMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESF 559
+ + A +S + I LI+++TY N ++ P ++AV IE I+ F
Sbjct: 168 LRDTRLTKGADLSYTKD-DIDILIIESTYGNSIH--PDRKAVELSFIEKIKEILF 219
>sp|Q24009|BICC_DROME Protein bicaudal C OS=Drosophila melanogaster GN=BicC PE=1 SV=2
Length = 905
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 240 FLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKIL---HTLC 290
L SLGL Y + FV EID + LTEE+L+ +G+ A G RKK+L HTL
Sbjct: 813 LLTSLGLEHYIKIFVLNEIDLEVFTTLTEENLMELGIAAFGARKKLLTAIHTLL 866
>sp|Q55470|Y514_SYNY3 Uncharacterized protein sll0514 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0514 PE=4 SV=1
Length = 554
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 20/159 (12%)
Query: 419 FLTHFHMDHYQGL---TRSFHHGKIYCSLITARLVNM----KIGIPWDRLQVLPL-NQKT 470
F +H H DH GL + F H I S +T RL+ + + P+ R VLP + +
Sbjct: 64 FCSHAHRDHGLGLWQFHQQFPHIPILASEVTQRLLPLNWPDEFVPPFCR--VLPWRSPQE 121
Query: 471 TIAGIDVTCLEANHCPGSIIILFEPQNGK---AVLHTGDFRFSE----EMASMSVLQTCP 523
+ G+ V L A H PG+ +IL E NG V++TGD+ S + +++ L+
Sbjct: 122 VLPGLTVELLPAGHLPGAALILLEYHNGDRLYRVIYTGDYCLSHLQLVDGLALTPLRGLK 181
Query: 524 IHTLILDTTYCNPLYDFPKQEAVIQFV--IEAIQAESFN 560
LIL+ Y N +Q+ QF+ IE + A+ N
Sbjct: 182 PDVLILEGHYGNRRLPHRRQQEK-QFIQAIETVLAKGRN 219
>sp|Q8K3X6|ANS4B_MOUSE Ankyrin repeat and SAM domain-containing protein 4B OS=Mus musculus
GN=Anks4b PE=1 SV=1
Length = 423
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 231 AVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLC 290
AVD +P+ FL S L + F+RE+ID + L ++EDL I + LGPRKK+L +
Sbjct: 348 AVDATPLEVFLQSQHLEEFLPIFMREQIDLEALLLCSDEDLQNIHMQ-LGPRKKVLSAID 406
Query: 291 EIKK 294
+ K+
Sbjct: 407 KRKQ 410
>sp|Q9UPX8|SHAN2_HUMAN SH3 and multiple ankyrin repeat domains protein 2 OS=Homo sapiens
GN=SHANK2 PE=1 SV=3
Length = 1470
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292
V ++L SL L ++EAF+ EID L L +EDLI +GVT +G R I L ++
Sbjct: 1412 VADWLESLNLGEHKEAFMDNEIDGSHLPNLQKEDLIDLGVTRVGHRMNIERALKQL 1467
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 393 PTWCCVPGTPFRVDAFKYLRGDCSHWFLTHFHMDH------------YQGLTRSFHHGK- 439
P + + PF D+ + D ++HFH+DH ++G H K
Sbjct: 69 PAYSGLVSLPF-FDSIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKA 127
Query: 440 IYCSLIT--ARLVNMK-----------IGIPWDRLQVLPLNQKTTIAGIDVTCLEANHCP 486
IY L++ ++ N+ + ++++ + QK GI VTC A H
Sbjct: 128 IYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVL 187
Query: 487 GSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIH--TLILDTTYCNPLYDFPKQE 544
G+ + + E G +L+TGDF E+ M +T P+ LI+++TY +++ P+ E
Sbjct: 188 GAAMFMIEIA-GVKILYTGDFSRQEDRHLMGA-ETPPVKVDVLIIESTYGVQVHE-PRLE 244
Query: 545 AVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFL 579
+F Q N K L + + +E L +
Sbjct: 245 REKRFTSSVHQVVERNGKCLIPVFALGRAQELLLI 279
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 36/172 (20%)
Query: 393 PTWCCVPGTPFRVDAFKYLRGDCSHWFLTHFHMDHYQGLTRSFH-------HGKIYCSLI 445
P + + PF +D + D +THFH+DH LT HGK+Y +
Sbjct: 57 PAFTGIAALPF-IDELDWSTVDA--ILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHP 113
Query: 446 T-----------ARLVNM----------KIGIPWDRLQVLPLNQKTTIA-GIDVTCLEAN 483
T R+ N ++ W +++ + +Q +IA G+ T A
Sbjct: 114 TKAVYRFLMSDFVRISNAGNDDNLFDENEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAG 173
Query: 484 HCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIH--TLILDTTY 533
H G+ + L E G +L+TGDF EE + + P+ LI ++TY
Sbjct: 174 HVLGACMFLIEIA-GLRILYTGDFS-REEDRHLVQAEIPPVKPDVLICESTY 223
>sp|Q52KW0|SHAN2_XENLA SH3 and multiple ankyrin repeat domains protein 2 OS=Xenopus laevis
GN=shank2 PE=2 SV=1
Length = 1292
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292
V E+L SL L + E F+ EID L L +EDLI +GVT +G R I L ++
Sbjct: 1234 VAEWLESLHLGEHREMFMDNEIDGTHLPNLQKEDLIDLGVTRVGHRMNIERALKQL 1289
>sp|Q9QX74|SHAN2_RAT SH3 and multiple ankyrin repeat domains protein 2 OS=Rattus
norvegicus GN=Shank2 PE=1 SV=2
Length = 1474
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292
V ++L SL L ++E F+ EID L L +EDLI +GVT +G R I L ++
Sbjct: 1416 VADWLESLNLGEHKETFMDNEIDGSHLPNLQKEDLIDLGVTRVGHRMNIERALKQL 1471
>sp|Q80Z38|SHAN2_MOUSE SH3 and multiple ankyrin repeat domains protein 2 OS=Mus musculus
GN=Shank2 PE=1 SV=2
Length = 1476
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292
V ++L SL L ++E F+ EID L L +EDLI +GVT +G R I L ++
Sbjct: 1418 VADWLESLNLGEHKETFMDNEIDGSHLPNLQKEDLIDLGVTRVGHRMNIERALKQL 1473
>sp|P54753|EPHB3_HUMAN Ephrin type-B receptor 3 OS=Homo sapiens GN=EPHB3 PE=1 SV=2
Length = 998
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 179 ISDLNEELRQAHTNNCLDKCENQAQDVVFPKHERGPRLEPEIDLGLGRSPQKAVDVSPVV 238
+ D N + + N LDK A + + +P +D R+ + V
Sbjct: 876 VRDRNLRPKFSQIVNTLDKLIRNAASLKVIASAQSGMSQPLLD----RTVPDYTTFTTVG 931
Query: 239 EFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297
++L ++ + RY+E+FV +D + +T EDL+ IGVT G +KKIL ++ +++ + +
Sbjct: 932 DWLDAIKMGRYKESFVSAGFASFDLVAQMTAEDLLRIGVTLAGHQKKILSSIQDMRLQMN 991
Query: 298 RAV 300
+ +
Sbjct: 992 QTL 994
>sp|Q07498|EPHB3_CHICK Ephrin type-B receptor 3 (Fragment) OS=Gallus gallus GN=EPHB3 PE=2
SV=1
Length = 988
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 179 ISDLNEELRQAHTNNCLDKCENQAQDVVFPKHERGPRLEPEIDLGLGRSPQKAVDVSPVV 238
+ D N + A N LDK A + + +P +D R+ + V
Sbjct: 866 VRDRNLRPKFAQIVNTLDKLIRNAASLKVIASVQSGVSQPLLD----RTVPDYTTFTTVG 921
Query: 239 EFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297
++L ++ + RY+E FV +D + +T EDL+ IGVT G +KKIL ++ +++ + +
Sbjct: 922 DWLDAIKMGRYKENFVNAGFASFDLVAQMTAEDLLRIGVTLAGHQKKILSSIQDMRLQMN 981
Query: 298 RAV 300
+ +
Sbjct: 982 QTL 984
>sp|P54761|EPHB4_MOUSE Ephrin type-B receptor 4 OS=Mus musculus GN=Ephb4 PE=1 SV=2
Length = 987
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 181 DLNEELRQAHTNNCLDKCENQAQDVVFPKHERGPRLEPEIDLGLGRSPQKAVDVSPVVEF 240
D N R + LDK + E G P +D R P + S V E+
Sbjct: 860 DRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLLDQ---RQPHYSAFGS-VGEW 915
Query: 241 LHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295
L ++ + RYEE+F ++ + ++ EDL+ IGVT G +KKIL ++ +K +
Sbjct: 916 LRAIKMGRYEESFAAAGFGSFEVVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQ 971
>sp|P54760|EPHB4_HUMAN Ephrin type-B receptor 4 OS=Homo sapiens GN=EPHB4 PE=1 SV=2
Length = 987
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 181 DLNEELRQAHTNNCLDKCENQAQDVVFPKHERGPRLEPEIDLGLGRSPQKAVDVSPVVEF 240
D N R + LDK + E G P +D R P + S V E+
Sbjct: 860 DRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLLDQ---RQPHYSAFGS-VGEW 915
Query: 241 LHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295
L ++ + RYEE+F ++ + ++ EDL+ IGVT G +KKIL ++ +K +
Sbjct: 916 LRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQ 971
>sp|Q3UES3|TNKS2_MOUSE Tankyrase-2 OS=Mus musculus GN=Tnks2 PE=2 SV=2
Length = 1166
Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 223 GLGRSPQKAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPR 282
GL R +D S + +F+ +LGL + F RE+I D L + ++L IG+ A G R
Sbjct: 865 GLQRKEDSGIDFS-ITQFIRNLGLEHLMDIFEREQITLDVLVEMGHKELKEIGINAYGHR 923
Query: 283 KKIL 286
K++
Sbjct: 924 HKLI 927
>sp|P54754|EPHB3_MOUSE Ephrin type-B receptor 3 OS=Mus musculus GN=Ephb3 PE=1 SV=2
Length = 993
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 179 ISDLNEELRQAHTNNCLDKCENQAQDVVFPKHERGPRLEPEIDLGLGRSPQKAVDVSPVV 238
+ D N + + N LDK A + +P +D R+ + V
Sbjct: 871 VRDRNLRPKFSQIVNTLDKLIRNAASLKVTASAPSGMSQPLLD----RTVPDYTTFTTVG 926
Query: 239 EFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297
++L ++ + RY+E+FV +D + +T EDL+ IGVT G +KKIL ++ +++ + +
Sbjct: 927 DWLDAIKMGRYKESFVGAGFASFDLVAQMTAEDLLRIGVTLAGHQKKILCSIQDMRLQMN 986
Query: 298 RAV 300
+ +
Sbjct: 987 QTL 989
>sp|Q6FM94|VTS1_CANGA Protein VTS1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=VTS1 PE=3 SV=1
Length = 549
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 240 FLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298
+L +L L +Y + + ++ W+ L +L +EDL+ GV ALG R+K+L ++ +R
Sbjct: 481 WLKTLRLHKYSD--ILNDLSWEKLIYLEDEDLLKRGVLALGARRKLLKAFTIVRDYKNR 537
>sp|Q9P6R7|VTS1_SCHPO Protein vts1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC13E7.03c PE=1 SV=1
Length = 713
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292
+ +L SL L +Y ++ DWD L L++ DL G+ ALG R+K+L + E+
Sbjct: 600 IPSWLRSLRLHKYTNNL--KDTDWDALVSLSDLDLQNRGIMALGARRKLLKSFQEV 653
>sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens
GN=SHANK1 PE=1 SV=2
Length = 2161
Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTL 289
V ++L LGLA + F+ EID L LT+ED + +GVT +G R I L
Sbjct: 2103 VADWLEWLGLAEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRAL 2155
>sp|P54755|EPHA5_CHICK Ephrin type-A receptor 5 OS=Gallus gallus GN=EPHA5 PE=2 SV=1
Length = 1013
Score = 40.8 bits (94), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 221 DLGLGRSPQKAVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTAL 279
+L + SP + V E+L ++ + RY E F+ D++ +T EDL +GVT +
Sbjct: 930 NLLVEHSPVGSGAYRSVGEWLEAIKMGRYTEIFMENGYSSMDSVAQVTLEDLRRLGVTLV 989
Query: 280 GPRKKILHTLCEIK 293
G +KKI+++L E+K
Sbjct: 990 GHQKKIMNSLQEMK 1003
>sp|Q07497|EPHB5_CHICK Ephrin type-B receptor 5 OS=Gallus gallus GN=EPHB5 PE=2 SV=1
Length = 1002
Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 224 LGRSPQKAVDVSPVVEFLHSLGLARYEEAFVREE-IDWDTLQWLTEEDLIGIGVTALGPR 282
L SP +S E+L ++ + RY+E F + I +D + +T EDL IG+T +G +
Sbjct: 921 LSNSPPDFPSLSNAHEWLDAIKMGRYKENFDQAGLITFDVISRMTLEDLQRIGITLVGHQ 980
Query: 283 KKILHTLCEIK 293
KKIL+++ +K
Sbjct: 981 KKILNSIQLMK 991
>sp|P54756|EPHA5_HUMAN Ephrin type-A receptor 5 OS=Homo sapiens GN=EPHA5 PE=1 SV=3
Length = 1037
Score = 40.4 bits (93), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 227 SPQKAVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKI 285
SP + V E+L ++ + RY E F+ D + +T EDL +GVT +G +KKI
Sbjct: 960 SPLGSGAYRSVGEWLEAIKMGRYTEIFMENGYSSMDAVAQVTLEDLRRLGVTLVGHQKKI 1019
Query: 286 LHTLCEIK 293
+++L E+K
Sbjct: 1020 MNSLQEMK 1027
>sp|Q6CY29|VTS1_KLULA Protein VTS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=VTS1 PE=3
SV=1
Length = 459
Score = 40.0 bits (92), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 237 VVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEY 296
V +L SL L +Y EA + W L +L +E L +GV+ALG R+K+L I +EY
Sbjct: 392 VPAWLKSLRLHKYSEALGSKP--WFELIYLDDEALENMGVSALGARRKLLKAFS-IVREY 448
>sp|Q54XX5|Y9849_DICDI Probable serine/threonine-protein kinase DDB_G0278535
OS=Dictyostelium discoideum GN=DDB_G0278535 PE=3 SV=1
Length = 848
Score = 40.0 bits (92), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 204 DVVFPKHERGPRLEPEIDLGLGRSPQKAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTL 263
D+ +E+ E + +G R +V + +L S+ L +Y FV+EEI D L
Sbjct: 350 DITIKGNEKKTCYELSLTIGNQRVINFLKNVQDIFNWLKSIDLEQYWLNFVKEEIFMDLL 409
Query: 264 QWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295
+ E L +G+T G R KI+ C I ++
Sbjct: 410 LDIDERTLDSLGITYSGHRLKIIRN-CRILRD 440
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 39/203 (19%)
Query: 419 FLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPW-DRLQVLPLNQKTTI--AGI 475
++H H+DH G + KIYC+ TA L+ I W D L + ++ I A
Sbjct: 52 IVSHAHLDHC-GAIPFYKFKKIYCTHPTADLMF----ITWRDTLNLTKAYKEEDIQHAME 106
Query: 476 DVTCLE-----------------ANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSV 518
++ CL A H GS I E +GK +L+TGD E S ++
Sbjct: 107 NIECLNYYEERQITENIKFKFYNAGHILGSASIYLE-VDGKKILYTGDIN---EGVSRTL 162
Query: 519 L----QTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGK 574
L I LI+++TY +PL P ++ + + +IE I +E+ +I + IG+
Sbjct: 163 LPADTDIDEIDVLIIESTYGSPLDIKPARKTLERQLIEEI-SETIENGGKVIIPVFAIGR 221
Query: 575 ERLFLEVARVLRKKIYVNAAKFR 597
+ E+ ++ Y+ + K R
Sbjct: 222 AQ---EILLIINN--YIRSGKLR 239
>sp|Q495M9|USH1G_HUMAN Usher syndrome type-1G protein OS=Homo sapiens GN=USH1G PE=1 SV=1
Length = 461
Score = 39.7 bits (91), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 219 EIDLGLGRSPQKAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTA 278
E+DLGL + + SP+ FL SL + + +E+ID + L ++ DL I V
Sbjct: 376 ELDLGLDEDLEP--ETSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVP- 432
Query: 279 LGPRKKILHTLCEIKKEYSR 298
LGPRKKIL + ++ R
Sbjct: 433 LGPRKKILGAVRRRRQAMER 452
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,777,039
Number of Sequences: 539616
Number of extensions: 12453668
Number of successful extensions: 33712
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 33466
Number of HSP's gapped (non-prelim): 231
length of query: 725
length of database: 191,569,459
effective HSP length: 125
effective length of query: 600
effective length of database: 124,117,459
effective search space: 74470475400
effective search space used: 74470475400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)