Query 004877
Match_columns 725
No_of_seqs 462 out of 3151
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 14:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1361 Predicted hydrolase in 100.0 9.5E-45 2.1E-49 398.9 28.5 333 390-724 87-430 (481)
2 TIGR03675 arCOG00543 arCOG0054 100.0 1E-35 2.2E-40 344.8 31.4 302 413-724 227-611 (630)
3 COG1782 Predicted metal-depend 100.0 4E-36 8.6E-41 325.8 25.2 301 414-724 234-618 (637)
4 COG1236 YSH1 Predicted exonucl 100.0 8E-32 1.7E-36 300.6 27.5 295 414-721 49-404 (427)
5 TIGR00649 MG423 conserved hypo 100.0 6.5E-29 1.4E-33 277.4 32.2 302 413-724 57-397 (422)
6 KOG1136 Predicted cleavage and 99.9 3.3E-26 7.2E-31 238.3 22.1 299 413-724 59-427 (501)
7 KOG1137 mRNA cleavage and poly 99.9 2.2E-26 4.7E-31 252.1 21.4 318 391-724 45-434 (668)
8 COG0595 mRNA degradation ribon 99.9 1.8E-25 3.8E-30 254.1 28.4 316 392-718 42-401 (555)
9 TIGR03307 PhnP phosphonate met 99.7 3.7E-15 8E-20 154.1 18.7 165 397-571 33-212 (238)
10 PRK11244 phnP carbon-phosphoru 99.6 2.8E-15 6E-20 156.3 16.7 165 397-571 43-222 (250)
11 TIGR02651 RNase_Z ribonuclease 99.6 2.5E-15 5.5E-20 160.0 13.5 166 396-572 23-269 (299)
12 TIGR02649 true_RNase_BN ribonu 99.6 7.6E-15 1.7E-19 157.3 15.1 175 401-586 31-290 (303)
13 PRK02113 putative hydrolase; P 99.6 1.1E-13 2.3E-18 144.3 17.8 141 399-547 43-207 (252)
14 PF07522 DRMBL: DNA repair met 99.5 2.7E-14 5.8E-19 131.5 10.7 102 609-711 4-109 (110)
15 PRK02126 ribonuclease Z; Provi 99.5 7.8E-14 1.7E-18 151.8 15.7 151 386-536 11-280 (334)
16 PF12706 Lactamase_B_2: Beta-l 99.5 2.2E-13 4.7E-18 134.7 15.9 114 414-535 29-159 (194)
17 PRK05184 pyrroloquinoline quin 99.5 3.1E-13 6.7E-18 145.3 16.1 116 414-533 80-222 (302)
18 TIGR02108 PQQ_syn_pqqB coenzym 99.5 3.8E-13 8.2E-18 144.6 16.1 117 413-533 78-222 (302)
19 PRK00685 metal-dependent hydro 99.4 4.9E-12 1.1E-16 129.3 18.3 130 397-532 14-166 (228)
20 TIGR02650 RNase_Z_T_toga ribon 99.4 1.4E-12 3E-17 137.5 13.5 170 392-574 10-248 (277)
21 PF00536 SAM_1: SAM domain (St 99.4 2.9E-13 6.3E-18 112.2 5.0 63 231-293 2-64 (64)
22 COG1234 ElaC Metal-dependent h 99.4 4.5E-12 9.8E-17 135.7 15.4 188 398-595 27-286 (292)
23 PRK00055 ribonuclease Z; Revie 99.3 5.6E-12 1.2E-16 131.6 11.0 181 397-592 26-258 (270)
24 PF07647 SAM_2: SAM domain (St 99.3 1.3E-12 2.7E-17 109.0 4.2 64 230-293 2-66 (66)
25 PRK04286 hypothetical protein; 99.3 2E-11 4.4E-16 131.0 14.2 196 394-595 18-279 (298)
26 KOG1135 mRNA cleavage and poly 99.3 7E-11 1.5E-15 134.0 16.2 180 396-579 20-243 (764)
27 cd00166 SAM Sterile alpha moti 99.2 9E-12 2E-16 101.8 4.9 62 232-293 2-63 (63)
28 smart00454 SAM Sterile alpha m 99.2 4.8E-11 1E-15 98.6 5.7 65 230-294 2-67 (68)
29 PRK11709 putative L-ascorbate 99.1 1.4E-09 3E-14 119.6 18.3 127 400-532 97-251 (355)
30 smart00849 Lactamase_B Metallo 99.0 6E-10 1.3E-14 108.0 9.1 98 413-513 40-149 (183)
31 PRK11921 metallo-beta-lactamas 99.0 1.6E-09 3.4E-14 120.8 11.8 91 413-507 68-163 (394)
32 KOG4374 RNA-binding protein Bi 99.0 5.8E-10 1.3E-14 112.0 6.5 64 233-296 150-213 (216)
33 TIGR03413 GSH_gloB hydroxyacyl 98.9 5E-09 1.1E-13 109.7 10.7 98 401-510 21-130 (248)
34 KOG0196 Tyrosine kinase, EPH ( 98.9 2E-09 4.3E-14 124.3 8.1 87 214-301 904-991 (996)
35 PLN02398 hydroxyacylglutathion 98.9 9.2E-09 2E-13 111.8 10.9 100 401-510 99-210 (329)
36 PLN02469 hydroxyacylglutathion 98.9 8.7E-09 1.9E-13 108.7 10.4 101 401-510 24-139 (258)
37 PRK05452 anaerobic nitric oxid 98.9 8.5E-09 1.8E-13 117.7 10.8 112 393-507 36-167 (479)
38 PF02112 PDEase_II: cAMP phosp 98.8 5.4E-08 1.2E-12 105.9 14.8 143 413-555 78-279 (335)
39 PRK10241 hydroxyacylglutathion 98.8 1.5E-08 3.3E-13 106.3 9.4 98 400-511 22-132 (251)
40 PF13483 Lactamase_B_3: Beta-l 98.8 2.6E-08 5.7E-13 97.1 9.8 115 395-533 11-138 (163)
41 KOG2121 Predicted metal-depend 98.7 6.4E-09 1.4E-13 119.7 3.5 120 413-536 500-653 (746)
42 PLN02962 hydroxyacylglutathion 98.7 6.4E-08 1.4E-12 101.8 8.7 102 401-512 37-156 (251)
43 COG1235 PhnP Metal-dependent h 98.6 8.8E-08 1.9E-12 101.4 7.9 152 414-571 62-236 (269)
44 KOG4384 Uncharacterized SAM do 98.6 4.1E-08 8.8E-13 104.9 4.2 67 232-298 213-280 (361)
45 COG0491 GloB Zn-dependent hydr 98.5 1.9E-07 4.1E-12 94.7 8.5 96 414-512 62-173 (252)
46 COG2220 Predicted Zn-dependent 98.5 2E-06 4.3E-11 90.4 14.8 137 393-533 16-183 (258)
47 KOG0813 Glyoxylase [General fu 98.4 6.8E-07 1.5E-11 93.8 7.4 89 413-510 50-143 (265)
48 KOG1170 Diacylglycerol kinase 98.3 4.7E-07 1E-11 104.5 3.7 72 228-299 994-1065(1099)
49 PF00753 Lactamase_B: Metallo- 98.2 2.2E-06 4.9E-11 82.5 6.6 99 413-513 42-152 (194)
50 KOG4375 Scaffold protein Shank 98.2 1.6E-06 3.5E-11 89.4 5.8 65 228-292 206-270 (272)
51 KOG1138 Predicted cleavage and 98.2 0.00017 3.8E-09 80.5 21.2 278 414-705 96-471 (653)
52 PF07521 RMMBL: RNA-metabolisi 98.1 3.1E-06 6.8E-11 65.2 4.0 35 678-714 9-43 (43)
53 COG5212 PDE1 Low-affinity cAMP 98.1 3E-05 6.4E-10 81.0 11.2 122 414-535 112-270 (356)
54 COG0426 FpaA Uncharacterized f 98.1 2E-05 4.4E-10 86.9 10.6 114 391-508 35-167 (388)
55 COG2333 ComEC Predicted hydrol 98.0 3.8E-05 8.3E-10 82.5 11.7 116 413-529 89-213 (293)
56 TIGR00361 ComEC_Rec2 DNA inter 98.0 8.4E-05 1.8E-09 88.5 15.1 107 414-529 490-605 (662)
57 PRK11539 ComEC family competen 97.8 0.00012 2.7E-09 88.3 12.1 102 414-529 551-663 (755)
58 KOG3678 SARM protein (with ste 97.5 6.8E-05 1.5E-09 83.0 4.4 69 230-298 463-532 (832)
59 COG1237 Metal-dependent hydrol 97.4 0.00043 9.4E-09 72.5 7.9 54 395-448 26-96 (259)
60 COG2248 Predicted hydrolase (m 97.2 0.0072 1.6E-07 63.1 13.9 172 414-592 65-275 (304)
61 KOG0814 Glyoxylase [General fu 97.2 0.0011 2.3E-08 65.6 7.4 87 414-510 57-144 (237)
62 PF09597 IGR: IGR protein moti 96.6 0.0017 3.8E-08 53.1 3.2 54 237-294 1-56 (57)
63 KOG3798 Predicted Zn-dependent 96.5 0.017 3.7E-07 60.3 10.1 155 413-575 131-307 (343)
64 KOG1899 LAR transmembrane tyro 96.2 0.0029 6.4E-08 72.3 3.0 69 230-298 621-689 (861)
65 PF14597 Lactamase_B_5: Metall 95.4 0.023 5E-07 56.9 5.0 100 397-509 29-139 (199)
66 KOG1899 LAR transmembrane tyro 94.8 0.02 4.4E-07 65.7 3.1 67 232-298 550-617 (861)
67 KOG1738 Membrane-associated gu 93.5 0.046 1E-06 63.4 2.8 67 230-296 5-73 (638)
68 KOG3791 Predicted RNA-binding 91.6 0.084 1.8E-06 60.9 1.6 55 234-290 475-529 (569)
69 KOG4374 RNA-binding protein Bi 90.1 0.12 2.5E-06 53.1 0.8 61 235-295 118-179 (216)
70 COG2015 Alkyl sulfatase and re 90.1 0.72 1.6E-05 52.5 7.0 58 391-448 124-205 (655)
71 KOG3930 Uncharacterized conser 88.1 0.56 1.2E-05 50.4 4.2 61 239-299 6-71 (389)
72 KOG4403 Cell surface glycoprot 78.5 1.1 2.4E-05 50.1 1.7 59 228-286 131-194 (575)
73 PF04904 NCD1: NAB conserved r 78.4 3.7 8.1E-05 35.7 4.4 58 237-294 12-75 (82)
74 KOG4736 Uncharacterized conser 74.1 9.7 0.00021 41.2 7.2 106 399-512 103-216 (302)
75 PF13543 KSR1-SAM: SAM like do 72.6 5 0.00011 38.4 4.2 61 232-293 64-129 (129)
76 smart00734 ZnF_Rad18 Rad18-lik 63.6 4.1 8.9E-05 28.1 1.2 23 170-195 2-24 (26)
77 KOG0249 LAR-interacting protei 61.6 2.9 6.2E-05 49.7 0.3 58 239-296 680-738 (916)
78 PF10996 Beta-Casp: Beta-Casp 60.4 13 0.00029 34.2 4.5 48 617-671 79-126 (126)
79 KOG0249 LAR-interacting protei 57.9 10 0.00022 45.3 3.8 69 230-298 586-657 (916)
80 KOG3678 SARM protein (with ste 56.1 13 0.00028 42.6 4.1 61 233-293 536-599 (832)
81 PF09235 Ste50p-SAM: Ste50p, s 54.6 5.9 0.00013 34.2 0.9 46 230-275 4-53 (75)
82 PF04423 Rad50_zn_hook: Rad50 49.3 5.3 0.00012 32.1 -0.1 12 171-182 22-33 (54)
83 KOG3835 Transcriptional corepr 43.4 27 0.00058 39.0 4.0 58 237-294 14-77 (495)
84 cd08541 SAM_PNT-FLI-1 Sterile 38.6 46 0.00099 30.1 4.1 64 230-296 18-85 (91)
85 PF03118 RNA_pol_A_CTD: Bacter 37.6 34 0.00074 28.8 3.0 38 240-277 13-53 (66)
86 KOG0507 CASK-interacting adapt 34.8 10 0.00022 45.6 -0.8 65 232-296 295-363 (854)
87 PF13691 Lactamase_B_4: tRNase 33.4 24 0.00051 29.7 1.3 18 413-430 45-63 (63)
88 KOG4279 Serine/threonine prote 30.7 73 0.0016 38.8 5.1 67 230-297 1148-1216(1226)
89 KOG1002 Nucleotide excision re 29.6 24 0.00051 41.0 0.9 40 141-180 547-586 (791)
90 COG0272 Lig NAD-dependent DNA 29.3 19 0.00041 43.2 0.1 43 252-295 461-505 (667)
91 cd08535 SAM_PNT-Tel_Yan Steril 28.9 74 0.0016 27.1 3.6 60 230-294 4-67 (68)
92 cd08531 SAM_PNT-ERG_FLI-1 Ster 28.6 67 0.0015 27.9 3.4 63 230-295 6-72 (75)
93 PF13878 zf-C2H2_3: zinc-finge 27.7 42 0.00091 25.7 1.8 27 168-194 12-38 (41)
94 cd08203 SAM_PNT Sterile alpha 27.3 34 0.00074 28.8 1.3 43 230-274 3-49 (66)
95 KOG0199 ACK and related non-re 26.6 65 0.0014 39.2 3.8 61 237-298 12-74 (1039)
96 PF06568 DUF1127: Domain of un 26.6 34 0.00075 25.9 1.1 19 259-277 16-34 (40)
97 PF12706 Lactamase_B_2: Beta-l 26.2 58 0.0013 31.7 3.0 25 684-708 169-193 (194)
98 cd08532 SAM_PNT-PDEF-like Ster 25.9 1.1E+02 0.0024 26.7 4.2 59 230-294 11-73 (76)
99 COG5432 RAD18 RING-finger-cont 24.9 89 0.0019 33.9 4.1 108 167-287 158-272 (391)
100 PF13240 zinc_ribbon_2: zinc-r 24.8 32 0.00069 23.1 0.6 13 167-179 11-23 (23)
101 PF06057 VirJ: Bacterial virul 24.8 1.2E+02 0.0027 31.1 5.0 73 500-575 5-80 (192)
102 cd08538 SAM_PNT-ESE-2-like Ste 24.8 50 0.0011 29.1 1.9 61 230-294 8-73 (78)
103 smart00251 SAM_PNT SAM / Point 24.2 80 0.0017 27.8 3.1 59 230-294 18-81 (82)
104 cd08757 SAM_PNT_ESE Sterile al 23.1 41 0.00088 28.6 1.0 45 230-274 3-51 (68)
105 KOG1135 mRNA cleavage and poly 22.9 1.1E+02 0.0024 36.9 4.8 44 679-724 540-583 (764)
106 cd08540 SAM_PNT-ERG Sterile al 22.9 1.1E+02 0.0023 26.7 3.6 63 230-295 6-72 (75)
107 TIGR00599 rad18 DNA repair pro 22.4 1.6E+02 0.0034 33.7 5.7 31 262-292 265-299 (397)
108 PF02670 DXP_reductoisom: 1-de 22.2 1.3E+02 0.0029 28.8 4.4 39 681-723 28-66 (129)
109 PF13483 Lactamase_B_3: Beta-l 21.9 81 0.0018 30.4 3.0 30 679-708 132-163 (163)
110 PRK00685 metal-dependent hydro 21.6 1.1E+02 0.0023 31.1 4.0 26 684-709 168-193 (228)
111 PLN03186 DNA repair protein RA 21.3 1.4E+02 0.003 33.3 5.0 54 238-292 28-84 (342)
112 PF03119 DNA_ligase_ZBD: NAD-d 21.1 36 0.00077 24.0 0.2 10 171-180 1-10 (28)
No 1
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=100.00 E-value=9.5e-45 Score=398.93 Aligned_cols=333 Identities=47% Similarity=0.782 Sum_probs=289.3
Q ss_pred cCCCCcccCCCCceEeCCccccC-CCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCCCCcceEEecCCC
Q 004877 390 KDIPTWCCVPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQ 468 (725)
Q Consensus 390 ~~~p~~~~ipg~~~~ID~f~~~~-~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge 468 (725)
..+|+++..||..|.||+|++.. .++.+.|+||+|.||+.||...|.++++||+..|+.++...+++++..++.++.++
T Consensus 87 ~p~~~~~~~p~~~f~VD~f~~~~~~~~s~yFLsHFHSDHy~GL~~sW~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~ 166 (481)
T KOG1361|consen 87 IPLHVIKVLPGGEFSVDAFRYGHIEGCSAYFLSHFHSDHYIGLTKSWSHPPLYCSPITARLVPLKVSVTKQSIQALDLNQ 166 (481)
T ss_pred CCCcceeecCCCcEEEehhhcCCccccceeeeecccccccccccccccCCcccccccchhhhhhhcccChhhceeecCCC
Confidence 46889999999999999999876 58999999999999999999999998999999999999999999888899999999
Q ss_pred EEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCC-CCccEEEEecCCCCCCCCCCCHHHHH
Q 004877 469 KTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQT-CPIHTLILDTTYCNPLYDFPKQEAVI 547 (725)
Q Consensus 469 ~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~-~~~DlLIlEaTy~~~~~~~p~~~e~~ 547 (725)
++.+.++.|+.++|+||||++||+|+...|..++||||||+...+...|++.. ..+|.+++|+||+++.|.||++++++
T Consensus 167 ~~~i~~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~esv 246 (481)
T KOG1361|consen 167 PLEIPGIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEESV 246 (481)
T ss_pred ceeecceEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEeecccCCCCCCccHHHHH
Confidence 99999999999999999999999999888888999999999999988764444 78999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-CCcEEEEecccccHHHHHHHHHHHcCCcEEEechHHHHHHHcCCCccccccccc-CCCCCcEEEEe
Q 004877 548 QFVIEAIQAESFN-PKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTT-NEHESHIHVMP 625 (725)
Q Consensus 548 ~~l~e~I~~~~~~-~~~~vlIp~~slGreqll~eLa~~l~~~I~V~~~~~~I~~~lg~~~~~~~~it~-~~~e~~v~vvp 625 (725)
+.+++++...... .+.++++++|++|+|++++++|+.++.+|+|.+..+.+.+++|+.++. +++. +..+..+|+++
T Consensus 247 q~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l~~kI~v~~~~~~~~~~lg~~d~~--~~~s~d~~~ssvhv~~ 324 (481)
T KOG1361|consen 247 QEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARILNSKIWVEPRRLRLLQCLGFDDES--KLLSIDVDESSVHVVP 324 (481)
T ss_pred HHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHhCCceEEehhhchhhhhcCCCChh--hhhccccccCceeEee
Confidence 9999988764444 578899999999999999999999999999999999999999965433 4554 77789999999
Q ss_pred CCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcch-hhhcC-ceEEEEeccCCCCCHHHHHHHHHHcCCCE
Q 004877 626 MWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGR-RWQQG-TIIRYEVPYSEHCSFTELKEFVKFVSPEH 703 (725)
Q Consensus 626 ~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr-~~~~G-~~~v~~vpyS~HAs~~EL~~fV~~lrPk~ 703 (725)
++.+.....+..+...+..+++.++++++|||+.+......... +.+.| .+.++.+|||+|++|.||.+|++.++|+.
T Consensus 325 ~~~l~~~~~l~~~~~~~~~~~s~~v~~~~tgwt~~~~~s~~~~~~~~~~~~~i~~~~vpYseHSs~~el~~f~~~lk~k~ 404 (481)
T KOG1361|consen 325 MNSLASSPSLKEYESQYEDGYSKLVGFSPTGWTKGKLVSLDKENSRPQSGSKIPISLVPYSEHSSYTELSEFLSKLKPKT 404 (481)
T ss_pred hhhhccccchhhhhcccccCcceeEeecccccccccccccCccccccccccccccccccccccCCHHHHHHHHHhcCCCe
Confidence 99887667777777788899999999999999976432222211 23445 34467899999999999999999999999
Q ss_pred EEEEeeCCC----hHHH-HHHHHHhh
Q 004877 704 IIPSVNNDG----RDSA-NAMVSLLL 724 (725)
Q Consensus 704 VIPtv~hg~----~~~~-~~m~~~l~ 724 (725)
|||+|+.+. .... +.|...+.
T Consensus 405 iiptv~~~~~~~~~~~~~~~k~s~~~ 430 (481)
T KOG1361|consen 405 IIPTVNEDTELSDATEVPEEKSSLLL 430 (481)
T ss_pred eecCccCCccccchhhhhhhhhhhhc
Confidence 999999999 6666 56665543
No 2
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=1e-35 Score=344.75 Aligned_cols=302 Identities=21% Similarity=0.302 Sum_probs=228.8
Q ss_pred CCccEEEeccCchhhhCChhhhc---CCceEEeCHHHHHHHHHHh----------CC--CC---------cceEEecCCC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKI----------GI--PW---------DRLQVLPLNQ 468 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~---~~~pIY~s~~T~~ll~~~l----------g~--~~---------~~~~~l~~ge 468 (725)
.++++|||||+|.||+||||.++ ..++||++.+|.+++...+ +. ++ ..+.++++++
T Consensus 227 ~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~ 306 (630)
T TIGR03675 227 DELDAVVITHAHLDHSGLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGE 306 (630)
T ss_pred HHCcEEEECCCCHHHHhhHHHHHHhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCC
Confidence 46899999999999999999653 2579999999988765321 11 11 2466889999
Q ss_pred EEEE-CCEEEEEEecccCCCCeEEEEeccCC-eEEEEecccCCChhhhhhcc-cCCCCccEEEEecCCCCCCCCCCCHHH
Q 004877 469 KTTI-AGIDVTCLEANHCPGSIIILFEPQNG-KAVLHTGDFRFSEEMASMSV-LQTCPIHTLILDTTYCNPLYDFPKQEA 545 (725)
Q Consensus 469 ~~~I-ggv~Vt~~~agH~pGS~~flIe~~~G-k~IlYTGD~~~~~~~~~~~~-l~~~~~DlLIlEaTy~~~~~~~p~~~e 545 (725)
++.+ ++++|+++++||++|++++.++..+| .+|+||||+++.......+. ....++|+||+|+||+++.+.+|++++
T Consensus 307 ~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~~~~~~r~~ 386 (630)
T TIGR03675 307 VTDIAPDIKLTFYNAGHILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRDDYQPSREE 386 (630)
T ss_pred eEEecCCEEEEEecCccccCceEEEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCCCCCCCHHH
Confidence 9999 58999999999999999988875444 68999999998765433322 124589999999999998777999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHH-c------CCcEEEechHHHH---HHHc-CCCcc-------
Q 004877 546 VIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARV-L------RKKIYVNAAKFRV---LKCL-DFSKE------- 607 (725)
Q Consensus 546 ~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~-l------~~~I~V~~~~~~I---~~~l-g~~~~------- 607 (725)
..+.+.+.|.+ ++..+|.|+||+|++||.|+++.+... + ..|||++++..++ +..+ ++...
T Consensus 387 ~e~~l~~~I~~-tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg~~~~~t~i~~~~~e~l~~~~~~~i~ 465 (630)
T TIGR03675 387 AEKELIKVVNE-TIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIF 465 (630)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEchHHHHHHHHHHhHHHhCHHHHHHHh
Confidence 99999999974 788899999999999999977655543 2 4699999976533 3222 11000
Q ss_pred --c--------cccccc--------CCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcch
Q 004877 608 --D--------IQWFTT--------NEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGR 669 (725)
Q Consensus 608 --~--------~~~it~--------~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr 669 (725)
. ...+.. +.....|++++.+|+. ++++.++..++..+....|.| +||+ +++|+||
T Consensus 466 ~~~~npf~~~~~~~v~~~~~~~~i~~~~~p~VIiatsGMl~-gG~~~~~l~~l~~d~kn~Iif--vGyq----a~gTlGr 538 (630)
T TIGR03675 466 HEGENPFLSEIFVRVEGSDERREIIESDEPAIILATSGMLN-GGPVVEYLKLLAPDPRNSLVF--VGYQ----AEGTLGR 538 (630)
T ss_pred hcCCCcccCCceEEeCCHHHHHHHhcCCCCEEEEECCCCCC-cchHHHHHHHHcCCCCCeEEE--eCCC----CCCchHH
Confidence 0 001111 1235678888877775 567777777787776666654 7875 5799999
Q ss_pred hhhcCce-----------------EEEEec-cCCCCCHHHHHHHHHHcCC--CEEEEEeeCCChHHHHHHHHHhh
Q 004877 670 RWQQGTI-----------------IRYEVP-YSEHCSFTELKEFVKFVSP--EHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 670 ~~~~G~~-----------------~v~~vp-yS~HAs~~EL~~fV~~lrP--k~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
+++.|.. .++.+. ||+|||+.||++||+.++| ++|+ ++||+++++.+|++.|.
T Consensus 539 ~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gfSaHaD~~~L~~~v~~~~p~p~~v~--lvHGe~~~~~~la~~l~ 611 (630)
T TIGR03675 539 RIQSGWREIPLTDEGKTETIKINMEVETVEGFSGHSDRRQLMNYVRRMQPKPEKIL--LNHGEPSKILDLASSIY 611 (630)
T ss_pred HHhcCCcEEEecCCCCceEEEEEEEEEEeCCccccCCHHHHHHHHHhcCCCCCEEE--EEcCCHHHHHHHHHHHH
Confidence 9877631 134565 9999999999999999965 9999 99999999999999885
No 3
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=4e-36 Score=325.84 Aligned_cols=301 Identities=21% Similarity=0.290 Sum_probs=229.4
Q ss_pred CccEEEeccCchhhhCChhhhcC---CceEEeCHHHHHHHHHHh----------C--CCC---------cceEEecCCCE
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSFH---HGKIYCSLITARLVNMKI----------G--IPW---------DRLQVLPLNQK 469 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~~---~~pIY~s~~T~~ll~~~l----------g--~~~---------~~~~~l~~ge~ 469 (725)
.+|||+|||+|+||+|-||.+|. .+||||+++|.+++-... | .++ ....++++++.
T Consensus 234 ~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgev 313 (637)
T COG1782 234 ELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEV 313 (637)
T ss_pred ccceEEEeecccccccchhhhhhcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcc
Confidence 58999999999999999998764 489999999998776321 2 121 23457899999
Q ss_pred EEE-CCEEEEEEecccCCCCeEEEEeccC-CeEEEEecccCCChhhhhhcc-cCCCCccEEEEecCCCCCCCCCCCHHHH
Q 004877 470 TTI-AGIDVTCLEANHCPGSIIILFEPQN-GKAVLHTGDFRFSEEMASMSV-LQTCPIHTLILDTTYCNPLYDFPKQEAV 546 (725)
Q Consensus 470 ~~I-ggv~Vt~~~agH~pGS~~flIe~~~-Gk~IlYTGD~~~~~~~~~~~~-l~~~~~DlLIlEaTy~~~~~~~p~~~e~ 546 (725)
..| .++++|++.|||+.||++.-+.-.+ ...|+|||||.+....+..++ -+..+++.||+|+||+......|+++++
T Consensus 314 TDIaPDirLTf~NAGHILGSA~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~d~q~~R~ea 393 (637)
T COG1782 314 TDIAPDIRLTFYNAGHILGSAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEA 393 (637)
T ss_pred cccCCccEEEEecccchhcceeeEEEecCCceeEEEecccccceeeecChhhccCcchhheeeeeccCCccccCccHHHH
Confidence 988 5899999999999999997665433 468999999999877554432 3457999999999999877788999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHc-------CCcEEEechHHHH---HHHc--------------
Q 004877 547 IQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVL-------RKKIYVNAAKFRV---LKCL-------------- 602 (725)
Q Consensus 547 ~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l-------~~~I~V~~~~~~I---~~~l-------------- 602 (725)
.+.+++.|.. +++.+|.||||+|++||.|+++.+.+.. ..|||++++..+. ...|
T Consensus 394 E~~L~~vi~~-t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYlDGMI~EatAIhtaYPEyL~~~lr~~I~~ 472 (637)
T COG1782 394 EKELIKVIND-TLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIFH 472 (637)
T ss_pred HHHHHHHHHH-HHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceeeeeeeeehhhhhhcCHHhhhHHHHHHHhc
Confidence 9999999985 8999999999999999999776665542 3799999998633 2222
Q ss_pred -CCCccccccc---cc--------CCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcchh
Q 004877 603 -DFSKEDIQWF---TT--------NEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRR 670 (725)
Q Consensus 603 -g~~~~~~~~i---t~--------~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr~ 670 (725)
|.++.....| .. ...+..|++.+.+|++. +-+-.+...++.++.+.+.| .|| |+++|+||+
T Consensus 473 ~g~NPF~se~f~~V~~~~~r~~i~~~~ep~iIlaTSGMlnG-GPvveyfk~lA~DprntliF--VgY----QAeGTLGRr 545 (637)
T COG1782 473 EGENPFLSEIFKRVEGSDERQEIIESDEPAIILATSGMLNG-GPVVEYFKHLAPDPKNTLIF--VGY----QAEGTLGRR 545 (637)
T ss_pred CCCCCccccceeecCChhHHHHHhcCCCCeEEEeccccccC-CcHHHHHHHhCCCCCceEEE--EEe----ccCcchhhh
Confidence 1111000011 10 12467888888888864 44445556678777766654 565 578999999
Q ss_pred hhcCceE------------------EEEe-ccCCCCCHHHHHHHHHHcC--CCEEEEEeeCCChHHHHHHHHHhh
Q 004877 671 WQQGTII------------------RYEV-PYSEHCSFTELKEFVKFVS--PEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 671 ~~~G~~~------------------v~~v-pyS~HAs~~EL~~fV~~lr--Pk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
+|.|... +..+ .||+|||+.||..||+.++ |++|+ ++||++.++..|+..+.
T Consensus 546 iq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki~--~~HGe~sk~~~lA~si~ 618 (637)
T COG1782 546 IQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKIL--LNHGEPSKCLDLASSIR 618 (637)
T ss_pred hhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHHHHHHHHhcCCCCceeE--eecCChHHHHHHHHHHH
Confidence 9887542 1223 3999999999999999995 57999 99999999999998764
No 4
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-32 Score=300.62 Aligned_cols=295 Identities=24% Similarity=0.343 Sum_probs=219.1
Q ss_pred CccEEEeccCchhhhCChhhhcC---CceEEeCHHHHHHHHHHhCC----C----------------CcceEEecCCCEE
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSFH---HGKIYCSLITARLVNMKIGI----P----------------WDRLQVLPLNQKT 470 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~~---~~pIY~s~~T~~ll~~~lg~----~----------------~~~~~~l~~ge~~ 470 (725)
++|++||||+|.||+++||.+.. .++||+++.|..+++..+.. . ...++++++++++
T Consensus 49 ~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~ 128 (427)
T COG1236 49 KVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPV 128 (427)
T ss_pred CcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCce
Confidence 68999999999999999996543 37999999999998854321 0 1246679999999
Q ss_pred EECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCCCCCCHHHHHHHH
Q 004877 471 TIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFV 550 (725)
Q Consensus 471 ~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l 550 (725)
.+++++|++++|||++||++|.++. ++.+|+||||++...+....++-....+|+||+|+||+++ .||++.+..+.+
T Consensus 129 ~v~~~~v~~~~AGHilGsa~~~le~-~~~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~EsTYg~~--~~~~r~~~e~~f 205 (427)
T COG1236 129 EVGGVKVTFYNAGHILGSAAILLEV-DGGRILYTGDVKRRKDRLLNGAELPPCIDVLIVESTYGDR--LHPNRDEVERRF 205 (427)
T ss_pred EeeeEEEEEecCCCccceeEEEEEe-CCceEEEEeccCCCcCCCCCccccCCCCcEEEEecccCCc--cCCCHHHHHHHH
Confidence 9999999999999999999999996 5667999999997655444332112227999999999994 788888888889
Q ss_pred HHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHcC----CcEEEechHHHHHHHcC-----CCcccc--------cccc
Q 004877 551 IEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLR----KKIYVNAAKFRVLKCLD-----FSKEDI--------QWFT 613 (725)
Q Consensus 551 ~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l~----~~I~V~~~~~~I~~~lg-----~~~~~~--------~~it 613 (725)
++.+.+ +..++|.++||+|++||.|+++.+...++ .|||+++..++++..+. +..+.. .++.
T Consensus 206 ~~~v~~-~l~~GG~vlipafa~graQEll~~L~~~~~~~~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 284 (427)
T COG1236 206 IESVKA-ALERGGTVLIPAFALGRAQELLLILRELGFAGDYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESRFRFVE 284 (427)
T ss_pred HHHHHH-HHhCCCEEEEecccccHHHHHHHHHHHHhccCCCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhhccccc
Confidence 999985 77788999999999999998887777665 89999999986654431 211110 0110
Q ss_pred -------cC-CCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcchhhhcCce---------
Q 004877 614 -------TN-EHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTI--------- 676 (725)
Q Consensus 614 -------~~-~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr~~~~G~~--------- 676 (725)
.. .....+++.+.+++. .++..++...+.......+. .+|| +++++.|+.+..+..
T Consensus 285 ~~~~~~~~~~~~~~~vi~a~~gm~~-~g~~~~~~~~~~~~~~n~~~--l~~~----~~~~t~gr~~~~~~~~~~~~~~~i 357 (427)
T COG1236 285 SRRNSMREGIDKGPAVVLAAPGMLK-GGRSRYYLKHLLSDEKNWVL--LPGY----QAEGTLGRVLLEGGTSVHIKGIEI 357 (427)
T ss_pred chhhhhhhhccCCceEEEEeccccc-CCcHHHHHHHHhcCCcceEE--Eccc----ccCCcchhHHhcCCcEEeecceee
Confidence 01 123456666666554 45666665555555444443 3555 456788887765541
Q ss_pred ----EEEEeccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHH
Q 004877 677 ----IRYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVS 721 (725)
Q Consensus 677 ----~v~~vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~ 721 (725)
.+..+.||+|||+.||.+||+.+.|.+|+ ++||+++...++.+
T Consensus 358 ~~~~~ve~~~~s~Had~~~l~~~i~~~~~~~v~--~~Hg~~~~~~~~~~ 404 (427)
T COG1236 358 KVKARVEELDFSAHADGDELLEFIKDISPPKVV--LVHGEPEYGAALRA 404 (427)
T ss_pred cccceEEEeccccccCcHHHHHHHhcCCCceEE--EEeCCchhhhHHHH
Confidence 13468899999999999999999999999 99999886533333
No 5
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.97 E-value=6.5e-29 Score=277.38 Aligned_cols=302 Identities=18% Similarity=0.217 Sum_probs=205.9
Q ss_pred CCccEEEeccCchhhhCChhhhcC---CceEEeCHHHHHHHHHHhC---CC-CcceEEecCCCEEEEC-CEEEEEEeccc
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSFH---HGKIYCSLITARLVNMKIG---IP-WDRLQVLPLNQKTTIA-GIDVTCLEANH 484 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~~---~~pIY~s~~T~~ll~~~lg---~~-~~~~~~l~~ge~~~Ig-gv~Vt~~~agH 484 (725)
.++++|||||+|.||++||+.++. ..+||+++.|+.+++..+. .. ...+..+++++++.++ +++|++++++|
T Consensus 57 ~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H 136 (422)
T TIGR00649 57 DKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITH 136 (422)
T ss_pred ccCCEEEECCCChHHhCcHHHHHHhCCCCeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCC
Confidence 478999999999999999996542 3589999999998886542 11 1246788999999996 59999999999
Q ss_pred -CCCCeEEEEeccCCeEEEEecccCCChhhhhh--c------ccCCCCccEEEEecCCCCCCCCCCCHHHHHHHHHHHHH
Q 004877 485 -CPGSIIILFEPQNGKAVLHTGDFRFSEEMASM--S------VLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQ 555 (725)
Q Consensus 485 -~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~--~------~l~~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l~e~I~ 555 (725)
+||+++|+++. .+++|+||||+++....... . .+...++|+||+|+||+......++.+...+.+.++++
T Consensus 137 ~~p~s~g~~i~~-~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~ 215 (422)
T TIGR00649 137 SIPDSVGFALHT-PLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFK 215 (422)
T ss_pred CCcceEEEEEEe-CCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 68999999986 45679999999875432211 0 01235799999999998643334666777777877775
Q ss_pred HhhcCCCcEEEEeccc--ccHHHHHHHHHHHcCCcEEEechH-H---HHHHHcCCCcccc-ccc-----ccCCCCCcEEE
Q 004877 556 AESFNPKTLFLIGSYT--IGKERLFLEVARVLRKKIYVNAAK-F---RVLKCLDFSKEDI-QWF-----TTNEHESHIHV 623 (725)
Q Consensus 556 ~~~~~~~~~vlIp~~s--lGreqll~eLa~~l~~~I~V~~~~-~---~I~~~lg~~~~~~-~~i-----t~~~~e~~v~v 623 (725)
+ .++++++++|+ ++|.|.++++|+.++++|+|.+.. . +++..+++..... ..+ ...+.+..|++
T Consensus 216 ~----~~~~viv~~fa~~~~R~~~i~~~a~~~~r~v~v~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~vii 291 (422)
T TIGR00649 216 N----AKGRVIVATFASNIHRVQQLIQIARKQGRKFAVYGRSMEHLFGIARRLGLIKNPHNNFISLKEVNNSPDENYLII 291 (422)
T ss_pred h----CCCEEEEEEccccHHHHHHHHHHHHHhCCEEEEECccHHHHHHHHHHcCCccCCccceeCHHHHhcCCcccEEEE
Confidence 3 45779999999 677788999999999999998743 3 3445566433211 111 11123566777
Q ss_pred EeCCCccchHHHHHHHhh----hcCCCCcEEEEeeccccccCCCCCCcc------hhhhcCceEEEEeccCCCCCHHHHH
Q 004877 624 MPMWTLASFKRLKHMSNQ----YAGRFSLIVAFSPTGWTFSKGKKKSPG------RRWQQGTIIRYEVPYSEHCSFTELK 693 (725)
Q Consensus 624 vp~~~~~s~~rl~~l~~~----~~~~~~~iI~~~~TGw~~~~g~e~t~g------r~~~~G~~~v~~vpyS~HAs~~EL~ 693 (725)
++++.......+..++.. +.=+....|.++..+|- |.+.... ...+.|..+.+.+++|+||+++||+
T Consensus 292 ~tg~~g~~~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~---G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~ 368 (422)
T TIGR00649 292 TTGSQGEPYAALTRIANNEHEQIRIRKGDTVVFSAPPIP---GNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHK 368 (422)
T ss_pred EeCCCCcHHHHHHHHhCCCCCcEEeCCCCEEEEECCCCC---cHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHH
Confidence 766643322233333221 00012234556555552 2221011 1223454444558999999999999
Q ss_pred HHHHHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 694 EFVKFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 694 ~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
.|++.++|+++| -+||+.....++++.+.
T Consensus 369 ~~i~~~~Pk~~i--pvHge~~~~~~~~~~a~ 397 (422)
T TIGR00649 369 LLLRLLKPKYII--PVHGEYRMLINHTKLAE 397 (422)
T ss_pred HHHHHhCCCEEE--ecCCcHHHHHHHHHHHH
Confidence 999999999999 67888777777776553
No 6
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.95 E-value=3.3e-26 Score=238.35 Aligned_cols=299 Identities=15% Similarity=0.272 Sum_probs=209.1
Q ss_pred CCccEEEeccCchhhhCChhhhc----CCceEEeCHHHHHHHHHHh-----------CCC-----------CcceEEecC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF----HHGKIYCSLITARLVNMKI-----------GIP-----------WDRLQVLPL 466 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~----~~~pIY~s~~T~~ll~~~l-----------g~~-----------~~~~~~l~~ 466 (725)
.-+|-|+|||+|.||+|+||+.- .++|||++.+|.++....+ |.. ...+..+..
T Consensus 59 ~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l 138 (501)
T KOG1136|consen 59 DAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDL 138 (501)
T ss_pred cceeEEEEeeecccccccccchHhhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeee
Confidence 34788999999999999999532 3589999999988654321 111 124567888
Q ss_pred CCEEEE-CCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcc-cCCCCccEEEEecCCCCCCCCCCCHH
Q 004877 467 NQKTTI-AGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSV-LQTCPIHTLILDTTYCNPLYDFPKQE 544 (725)
Q Consensus 467 ge~~~I-ggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~-l~~~~~DlLIlEaTy~~~~~~~p~~~ 544 (725)
.+++.+ .++.|+++.|||+.|++||.+.. +..+|+||||+...++.-..++ +...+.|+||.|+||+.... .++.
T Consensus 139 ~qt~~vD~dl~IrayYAGHVLGAaMf~ikv-Gd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiR--dskr 215 (501)
T KOG1136|consen 139 HQTIQVDEDLQIRAYYAGHVLGAAMFYIKV-GDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIR--DSKR 215 (501)
T ss_pred hheEEecccceeeeeecccccceeEEEEEe-cceeEEEecCccCCcccccchhhhccccCceEEeeccceeeec--cccc
Confidence 899988 57999999999999999999996 6788999999998876433322 33568999999999987432 1122
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHH------cCCcEEEechHH----HHHHHcC-CCcccc--cc
Q 004877 545 AVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARV------LRKKIYVNAAKF----RVLKCLD-FSKEDI--QW 611 (725)
Q Consensus 545 e~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~------l~~~I~V~~~~~----~I~~~lg-~~~~~~--~~ 611 (725)
-.++.+.+.+. +.+..+|.++||+|++||+|++--|.+. +..|||+..-.. ..|+.+. |..+.. ..
T Consensus 216 ~rERdFLk~Vh-ecVa~GGkvlIPvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~ 294 (501)
T KOG1136|consen 216 CRERDFLKKVH-ECVARGGKVLIPVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKF 294 (501)
T ss_pred hhHHHHHHHHH-HHHhcCCeEEEEeeecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhh
Confidence 22334444454 2566899999999999999976444432 467898875432 2333332 211110 01
Q ss_pred ccc----------------CCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcchhhhcCc
Q 004877 612 FTT----------------NEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGT 675 (725)
Q Consensus 612 it~----------------~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr~~~~G~ 675 (725)
++. +.....|.+.+++++..+-.+ .+.+.|...+...|++ -||.. .+|.|.++.+|.
T Consensus 295 ~~rNmfdfkhiKpfd~~~~~~pGp~VlFatPGMLhaG~SL-kvFK~W~~~~~Nlvim--PGYcV----~GTvG~kvl~G~ 367 (501)
T KOG1136|consen 295 VERNMFDFKHIKPFDRSYIEAPGPMVLFATPGMLHAGFSL-KVFKKWCPDPLNLVIM--PGYCV----AGTVGHKVLNGA 367 (501)
T ss_pred ccCCccccccCChhhhhhhcCCCCEEEEcCCcccccccch-HHHHhhCCCccceEee--cCcee----ccchhhhhhCCc
Confidence 111 123356777777777654333 4556788888777764 58764 577887776664
Q ss_pred eE-------------EEEeccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 676 II-------------RYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 676 ~~-------------v~~vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
.. +..+.||+|||...+.++++...|++|. ++||+..+..-|++.+.
T Consensus 368 ~kvei~~~~~eirl~V~~maFSaHaDAkGIm~li~~csPknVm--lVHGE~~kM~~Lk~ki~ 427 (501)
T KOG1136|consen 368 TKVEIYGTKVEIRLKVEYMAFSAHADAKGIMQLIKQCSPKNVM--LVHGEKSKMKFLKEKIE 427 (501)
T ss_pred cEEEEeeeEEEEEEEEEEeeeccccCchhHHHHHHhcCcceEE--EEeccchhhHHHHHhhH
Confidence 32 2457899999999999999999999999 99999888877776653
No 7
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.94 E-value=2.2e-26 Score=252.06 Aligned_cols=318 Identities=16% Similarity=0.262 Sum_probs=231.5
Q ss_pred CCCCcccCCCCceEeCCccccCCCccEEEeccCchhhhCChhhhc----CCceEEeCHHHHHHHHHHhC---------C-
Q 004877 391 DIPTWCCVPGTPFRVDAFKYLRGDCSHWFLTHFHMDHYQGLTRSF----HHGKIYCSLITARLVNMKIG---------I- 456 (725)
Q Consensus 391 ~~p~~~~ipg~~~~ID~f~~~~~~idaIfLTHaH~DHigGLp~~~----~~~pIY~s~~T~~ll~~~lg---------~- 456 (725)
..|.|......|| +|.++. ..+|.++|||+|.||++.||..+ +.+.+|++.+|.+..+..+. .
T Consensus 45 vhpaysg~aslpf-~d~vd~--s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~s~~ 121 (668)
T KOG1137|consen 45 VHPAYSGMASLPF-YDEVDL--SAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGD 121 (668)
T ss_pred cCccccccccccc-hhhccc--ccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHHhhhhcceEeeeccCc
Confidence 4666665555555 344322 36788999999999999999654 34899999999988774321 1
Q ss_pred -----------CCcceEEecCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhh-hhhcccCCCCc
Q 004877 457 -----------PWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEM-ASMSVLQTCPI 524 (725)
Q Consensus 457 -----------~~~~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~-~~~~~l~~~~~ 524 (725)
.+.++..+++.+..+++|+++.++.|||+.|++||+++. +|.+++||||+....+. +..+.+.+.++
T Consensus 122 ~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlgacMf~vei-agv~lLyTGd~sreeDrhl~aae~P~~~~ 200 (668)
T KOG1137|consen 122 DRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLGACMFMVEI-AGVRLLYTGDYSREEDRHLIAAEMPPTGP 200 (668)
T ss_pred cccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhhheeeeeee-ceEEEEeccccchhhcccccchhCCCCCc
Confidence 134577889999999999999999999999999999997 89999999999876542 33333557799
Q ss_pred cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHc--------CCcEEEechHH
Q 004877 525 HTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVL--------RKKIYVNAAKF 596 (725)
Q Consensus 525 DlLIlEaTy~~~~~~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l--------~~~I~V~~~~~ 596 (725)
|+||.|+||+.. .|.++++.+.++-.+|.. +..++|++|+|+|++|++|+++.+..++ +.|||..+..+
T Consensus 201 dvli~estygv~--~h~~r~~re~rlt~vIh~-~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~~iPiyyaSsla 277 (668)
T KOG1137|consen 201 DVLITESTYGVQ--IHEPREEREGRLTWVIHS-TVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLRDIPIYYASSLA 277 (668)
T ss_pred cEEEEEeeeeEE--ecCchHHhhhhhhhhHHh-hccCCCceEeeeeecchHHHHHHHHHHHhhcchhhhcCceeehhhHH
Confidence 999999999974 566778888888888874 7788999999999999999877666543 57999988775
Q ss_pred H----HHHHcC--CCccc------ccc--------cc-c---CCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEE
Q 004877 597 R----VLKCLD--FSKED------IQW--------FT-T---NEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAF 652 (725)
Q Consensus 597 ~----I~~~lg--~~~~~------~~~--------it-~---~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~ 652 (725)
+ +|+-+- ++... .+. +. . ++....++.+.++++.+ +..+.+...|..+..+.|.
T Consensus 278 kkcm~vfQtyv~~mnd~Irk~~~~~Npfifk~vs~L~~~D~f~D~gP~vv~aspgmlqs-glSRelfe~wcsD~kN~vl- 355 (668)
T KOG1137|consen 278 KKCMGVFQTYVNMMNDRIRKQSALRNPFIFKHVSILRTGDWFDDEGPSVVMASPGMLQS-GLSRELFERWCSDSKNAVL- 355 (668)
T ss_pred HhhhhhHheehhhhhhhhHHhhccCCceEeeccccccccccccccCCceeEeCchHhhh-hhhHHHHHHhCCCCCCcEE-
Confidence 3 232221 11100 000 10 0 12335677777777765 3445677778877665442
Q ss_pred eeccccccCCCCCCcchhh---------hcCc-----eEEEEeccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHH
Q 004877 653 SPTGWTFSKGKKKSPGRRW---------QQGT-----IIRYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANA 718 (725)
Q Consensus 653 ~~TGw~~~~g~e~t~gr~~---------~~G~-----~~v~~vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~ 718 (725)
..||+. +++..+.+ ..|. ..+..+.||+|.||.+-.+|++.++|.++| ++||+..++-+
T Consensus 356 -ipGy~V----egtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi~~i~~~~li--lVHGE~neM~r 428 (668)
T KOG1137|consen 356 -IPGYCV----EGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFIADITPPHLI--LVHGEANEMMR 428 (668)
T ss_pred -ecccee----chhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhhHHHHHHhCCCeEE--EEecccchhHH
Confidence 368875 34443322 1232 125678999999999999999999999999 99999888888
Q ss_pred HHHHhh
Q 004877 719 MVSLLL 724 (725)
Q Consensus 719 m~~~l~ 724 (725)
|+..|.
T Consensus 429 LKs~L~ 434 (668)
T KOG1137|consen 429 LKSALE 434 (668)
T ss_pred HHHHHH
Confidence 887764
No 8
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.94 E-value=1.8e-25 Score=254.06 Aligned_cols=316 Identities=22% Similarity=0.289 Sum_probs=222.3
Q ss_pred CCCcccCCCCceEeCCccccC---CCccEEEeccCchhhhCChhhhcC---CceEEeCHHHHHHHHHHhC-----CCCcc
Q 004877 392 IPTWCCVPGTPFRVDAFKYLR---GDCSHWFLTHFHMDHYQGLTRSFH---HGKIYCSLITARLVNMKIG-----IPWDR 460 (725)
Q Consensus 392 ~p~~~~ipg~~~~ID~f~~~~---~~idaIfLTHaH~DHigGLp~~~~---~~pIY~s~~T~~ll~~~lg-----~~~~~ 460 (725)
+|.. ..+|.++.|..+.|+. .++++|||||+|.||+||+|+++. ..|||+++.|+.+++.++. ..+..
T Consensus 42 fp~~-~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~ 120 (555)
T COG0595 42 FPED-DLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENE 120 (555)
T ss_pred cCcc-ccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCceecCHhhHHHHHHHHHHhccccccCc
Confidence 4533 6788888887777764 479999999999999999998774 2899999999999997654 12246
Q ss_pred eEEecCCCEEEECCEEEEEEeccc-CCCCeEEEEeccCCeEEEEecccCCChhhhhhc--------ccCCCCccEEEEec
Q 004877 461 LQVLPLNQKTTIAGIDVTCLEANH-CPGSIIILFEPQNGKAVLHTGDFRFSEEMASMS--------VLQTCPIHTLILDT 531 (725)
Q Consensus 461 ~~~l~~ge~~~Iggv~Vt~~~agH-~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~--------~l~~~~~DlLIlEa 531 (725)
++.+..+..++++++.|+++++.| +|+|++|.++++.|. |+|||||++........ .+...++++||+|+
T Consensus 121 ~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~-Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~Lisds 199 (555)
T COG0595 121 LHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGN-IVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDS 199 (555)
T ss_pred eEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCcc-EEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCC
Confidence 889999999999999999999999 899999999997774 99999999876433211 11245899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCcEEEEecccccHH--HHHHHHHHHcCCcEEEechHH----HHHHHcCCC
Q 004877 532 TYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKE--RLFLEVARVLRKKIYVNAAKF----RVLKCLDFS 605 (725)
Q Consensus 532 Ty~~~~~~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~slGre--qll~eLa~~l~~~I~V~~~~~----~I~~~lg~~ 605 (725)
|........++..++.+.+.+++.. .+++|++.+|+.+-+ |.++++|..+|++|.+.+..+ .+.+.+|+.
T Consensus 200 Tna~~pg~t~SE~~v~~~l~~i~~~----a~grVIv~tfaSni~Ri~~i~~~A~~~gR~vvv~GrSm~~~~~~a~~lg~~ 275 (555)
T COG0595 200 TNAENPGFTPSESEVGENLEDIIRN----AKGRVIVTTFASNIERIQTIIDAAEKLGRKVVVTGRSMERLIAIARRLGYL 275 (555)
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHh----CCCcEEEEEchhhHHHHHHHHHHHHHcCCeEEEEcHhHHHHHHHHhhcccc
Confidence 9988656678888888889888874 588999999987655 568899999999999998876 334555532
Q ss_pred cccc-cccccC-----CCCCcEEEEeCCCccchHHHHHHHhh----hcCCCCcEEEEeeccccccCCCCCC----cchhh
Q 004877 606 KEDI-QWFTTN-----EHESHIHVMPMWTLASFKRLKHMSNQ----YAGRFSLIVAFSPTGWTFSKGKKKS----PGRRW 671 (725)
Q Consensus 606 ~~~~-~~it~~-----~~e~~v~vvp~~~~~s~~rl~~l~~~----~~~~~~~iI~~~~TGw~~~~g~e~t----~gr~~ 671 (725)
.... .++... +.+..+++|.+.+......+..++.. +.-.....+.|+.+ ..++++.. ..+.+
T Consensus 276 ~~~~~~~i~~~~~~~~~~~~~lii~TG~qgep~aaL~r~a~~~h~~~~i~~gD~vIfss~---~ipgne~~~~~~~n~l~ 352 (555)
T COG0595 276 KLPDESFIEIREVKRYPDEEVLIICTGSQGEPMAALSRMANGEHRYVKIKEGDTVIFSSS---PIPGNEAAVYRLLNRLY 352 (555)
T ss_pred cCccccccCHHHhccccccceEEEEeCCCCCchhhhhHhhcCCccceecCCCCeEEEecc---CcCCcHHHHHHHHHHHH
Confidence 2111 222221 23345677776655444344333321 11123334444432 11111111 11123
Q ss_pred hcCceEE----EEeccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHH
Q 004877 672 QQGTIIR----YEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANA 718 (725)
Q Consensus 672 ~~G~~~v----~~vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~ 718 (725)
+.|..+. ..++.|+|++.+||+.+++.++|++++|+ ||+.....+
T Consensus 353 ~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPv--HGeyr~~~~ 401 (555)
T COG0595 353 KAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPV--HGEYRMLVA 401 (555)
T ss_pred hcCcEEeecccceeEecCCCChHHHHHHHHhhCCceeccc--CCCcHHHHH
Confidence 4555433 34689999999999999999999999965 555434333
No 9
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.66 E-value=3.7e-15 Score=154.13 Aligned_cols=165 Identities=21% Similarity=0.214 Sum_probs=110.2
Q ss_pred cCCCCceEeCCccc------cCCCccEEEeccCchhhhCChhhh-c---CCceEEeCHHHHHHHHHHhCCC-Ccce-EEe
Q 004877 397 CVPGTPFRVDAFKY------LRGDCSHWFLTHFHMDHYQGLTRS-F---HHGKIYCSLITARLVNMKIGIP-WDRL-QVL 464 (725)
Q Consensus 397 ~ipg~~~~ID~f~~------~~~~idaIfLTHaH~DHigGLp~~-~---~~~pIY~s~~T~~ll~~~lg~~-~~~~-~~l 464 (725)
...+..+.||+.-. ...++++|||||.|.||++||+.+ + ...+||+++.+..+... +..+ ...+ ..+
T Consensus 33 ~~~~~~iliD~G~~~~~~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~ 111 (238)
T TIGR03307 33 EFNGARTLIDAGLTDLAERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDL-FKHPGILDFSKPL 111 (238)
T ss_pred EECCcEEEEECCChhHhhccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHH-hcCcccccccccc
Confidence 34566677777521 124789999999999999999632 2 24789999887543322 2211 1122 247
Q ss_pred cCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCC---CCCC
Q 004877 465 PLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPL---YDFP 541 (725)
Q Consensus 465 ~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~---~~~p 541 (725)
..++.+.+++++|+++++.|..++++|+|+. +|++++|+||+...++.... .+...++|+||+|++|.... ..|.
T Consensus 112 ~~~~~~~~~~~~i~~~~~~H~~~~~g~~i~~-~~~~i~y~gDt~~~~~~~~~-~~~~~~~D~li~e~~~~~~~~~~~~H~ 189 (238)
T TIGR03307 112 EAFEPFDLGGLRVTPLPLVHSKLTFGYLLET-DGQRVAYLTDTAGLPPDTEA-FLKNHPLDVLILDCSHPPQSDAPRNHN 189 (238)
T ss_pred cCCceEEECCEEEEEEecCCCCcceEEEEec-CCcEEEEEecCCCCCHHHHH-HHhcCCCCEEEEeCCcCccccCCCCcC
Confidence 7889999999999999999988899999995 78889999999865443222 12334899999999996422 2344
Q ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEEeccc
Q 004877 542 KQEAVIQFVIEAIQAESFNPKTLFLIGSYT 571 (725)
Q Consensus 542 ~~~e~~~~l~e~I~~~~~~~~~~vlIp~~s 571 (725)
+. ..+.++++. +.++ .+++..++
T Consensus 190 ~~----~~~~~~~~~--~~~~-~lil~H~~ 212 (238)
T TIGR03307 190 DL----TRALAINEQ--LRPK-QVILTHIS 212 (238)
T ss_pred CH----HHHHHHHHH--cCCC-EEEEEecc
Confidence 43 344444442 3444 44455454
No 10
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.65 E-value=2.8e-15 Score=156.30 Aligned_cols=165 Identities=21% Similarity=0.177 Sum_probs=111.1
Q ss_pred cCCCCceEeCCccc------cCCCccEEEeccCchhhhCChhhh-c---CCceEEeCHHHHHHHHHHhCCC-Ccce-EEe
Q 004877 397 CVPGTPFRVDAFKY------LRGDCSHWFLTHFHMDHYQGLTRS-F---HHGKIYCSLITARLVNMKIGIP-WDRL-QVL 464 (725)
Q Consensus 397 ~ipg~~~~ID~f~~------~~~~idaIfLTHaH~DHigGLp~~-~---~~~pIY~s~~T~~ll~~~lg~~-~~~~-~~l 464 (725)
...+..+.||++.. ...++++|||||.|.||++||..+ + ...+||++..+..+.. .+..+ ...+ ..+
T Consensus 43 ~~~~~~iLiD~G~~~~~~~~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~l 121 (250)
T PRK11244 43 EFNGARTLIDAGLPDLAERFPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDD-LFKHPGILDFSHPL 121 (250)
T ss_pred EECCCEEEEECCChHHhhcCCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHH-HhcCcccccccccc
Confidence 44566677777621 125799999999999999999743 2 2468999987643322 12211 1122 347
Q ss_pred cCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCC---CCCC
Q 004877 465 PLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPL---YDFP 541 (725)
Q Consensus 465 ~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~---~~~p 541 (725)
..++++.+++++|+++++.|..++++|+|+. ++++|+|+||+...++.... .+...++|+||+|+||.... ..|.
T Consensus 122 ~~~~~~~~~~~~I~~~~~~H~~~s~g~~i~~-~~~~i~ysgDt~~~~~~~~~-~~~~~~~Dlli~e~~~~~~~~~~~~H~ 199 (250)
T PRK11244 122 EPFEPFDLGGLQVTPLPLNHSKLTFGYLLET-AHSRVAYLTDTVGLPEDTLK-FLRNNQPDLLVLDCSHPPQEDAPRNHN 199 (250)
T ss_pred CCCCCeeECCEEEEEEeeCCCcceeEEEEec-CCeEEEEEcCCCCCCHHHHH-HHhcCCCCEEEEeCcCCCCCCCCCCCC
Confidence 7889999999999999999998999999996 78889999999876443222 12235899999999997532 2344
Q ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEEeccc
Q 004877 542 KQEAVIQFVIEAIQAESFNPKTLFLIGSYT 571 (725)
Q Consensus 542 ~~~e~~~~l~e~I~~~~~~~~~~vlIp~~s 571 (725)
+.++ +.++++. ++.+. +++..++
T Consensus 200 ~~~~----a~~~a~~--~~~k~-lvltH~~ 222 (250)
T PRK11244 200 DLTT----ALAIIEV--LRPPR-VILTHIS 222 (250)
T ss_pred CHHH----HHHHHHh--cCCce-EEEEccc
Confidence 4433 3344432 34444 4444454
No 11
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.62 E-value=2.5e-15 Score=160.00 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=116.7
Q ss_pred ccCCCCceEeCCccccC----------CCccEEEeccCchhhhCChhhhc------C---CceEEeCHHHHHHHHHHhCC
Q 004877 396 CCVPGTPFRVDAFKYLR----------GDCSHWFLTHFHMDHYQGLTRSF------H---HGKIYCSLITARLVNMKIGI 456 (725)
Q Consensus 396 ~~ipg~~~~ID~f~~~~----------~~idaIfLTHaH~DHigGLp~~~------~---~~pIY~s~~T~~ll~~~lg~ 456 (725)
....+..+.||+..... .++++|||||+|.||++||+.+. . ..+||+++.+.+.++..+..
T Consensus 23 v~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~ 102 (299)
T TIGR02651 23 LKLNGELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRV 102 (299)
T ss_pred EEECCeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHHH
Confidence 34556778888874311 25899999999999999999432 1 36799999998887653321
Q ss_pred -----C-CcceEEecCCC-EEEECCEEEEEEecccCCCCeEEEEecc---------------------------------
Q 004877 457 -----P-WDRLQVLPLNQ-KTTIAGIDVTCLEANHCPGSIIILFEPQ--------------------------------- 496 (725)
Q Consensus 457 -----~-~~~~~~l~~ge-~~~Iggv~Vt~~~agH~pGS~~flIe~~--------------------------------- 496 (725)
. ...+..+..++ .+.+++++|+++++.|...+++|+|+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~ 182 (299)
T TIGR02651 103 SYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLDHSIPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTL 182 (299)
T ss_pred cccCCCceEEEEEccCCCceEecCCEEEEEEEcCCCCceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEe
Confidence 1 12345677777 5888999999999999888999999853
Q ss_pred ----------------CCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCC------CCCCCHHHHHHHHHHHH
Q 004877 497 ----------------NGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPL------YDFPKQEAVIQFVIEAI 554 (725)
Q Consensus 497 ----------------~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~------~~~p~~~e~~~~l~e~I 554 (725)
.|++|+|+||+++.+.+... ..++|+||+||||.+.. ..|.+.++ +.+++
T Consensus 183 ~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~----~~~~dlLi~E~~~~~~~~~~~~~~~H~t~~~----a~~~~ 254 (299)
T TIGR02651 183 IDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVIEF----AKNADLLIHEATFLDEDKKLAKEYGHSTAAQ----AAEIA 254 (299)
T ss_pred CCCeEEeHHHcccCCcCCcEEEEecCCCChHHHHHH----HcCCCEEEEECCCCchhHHHHhhcCCCCHHH----HHHHH
Confidence 15689999999998765543 35899999999998643 23444433 33444
Q ss_pred HHhhcCCCcEEEEecccc
Q 004877 555 QAESFNPKTLFLIGSYTI 572 (725)
Q Consensus 555 ~~~~~~~~~~vlIp~~sl 572 (725)
++ ++.+ .+++..|+.
T Consensus 255 ~~--~~~k-~lvltH~s~ 269 (299)
T TIGR02651 255 KE--ANVK-RLILTHISP 269 (299)
T ss_pred HH--cCCC-EEEEEeccc
Confidence 42 3444 445555653
No 12
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.61 E-value=7.6e-15 Score=157.35 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=120.3
Q ss_pred CceEeCCccccC----------CCccEEEeccCchhhhCChhhhc---------CCceEEeCHHHHHHHHHHhCC-----
Q 004877 401 TPFRVDAFKYLR----------GDCSHWFLTHFHMDHYQGLTRSF---------HHGKIYCSLITARLVNMKIGI----- 456 (725)
Q Consensus 401 ~~~~ID~f~~~~----------~~idaIfLTHaH~DHigGLp~~~---------~~~pIY~s~~T~~ll~~~lg~----- 456 (725)
..+.||+..... .++++|||||.|+||++||+.++ ...+||+++.+.+.++..+..
T Consensus 31 ~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~ 110 (303)
T TIGR02649 31 GLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWT 110 (303)
T ss_pred CEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHhccccc
Confidence 457778774321 36899999999999999999421 136899999998887754321
Q ss_pred C-CcceEEecCCCEEEECCEEEEEEecccCCCCeEEEEecc---------------------------------------
Q 004877 457 P-WDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQ--------------------------------------- 496 (725)
Q Consensus 457 ~-~~~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~--------------------------------------- 496 (725)
. ...++.+..++.+.+++++|+++++.|...+++|+|+..
T Consensus 111 ~~~~~~~~i~~~~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~ 190 (303)
T TIGR02649 111 DYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQI 190 (303)
T ss_pred CCceEEEEcCCCceEecCCeEEEEEEccCccceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEE
Confidence 1 123566777888888889999999999889999999842
Q ss_pred ----------CCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCC------CCCCCHHHHHHHHHHHHHHhhcC
Q 004877 497 ----------NGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPL------YDFPKQEAVIQFVIEAIQAESFN 560 (725)
Q Consensus 497 ----------~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~------~~~p~~~e~~~~l~e~I~~~~~~ 560 (725)
.|++|+|+||+++.+.+... ..++|+||+||||.+.. +.|.+-.+ +.+++++ ++
T Consensus 191 ~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~----~~~adlLi~Eat~~~~~~~~a~~~~H~t~~~----a~~~a~~--~~ 260 (303)
T TIGR02649 191 NGADYLAAPVPGKALAIFGDTGPCDAALDL----AKGVDVMVHEATLDITMEAKANSRGHSSTRQ----AATLARE--AG 260 (303)
T ss_pred cHHHeeCCCCCCcEEEEecCCCChHHHHHH----hcCCCEEEEeccCChhhHHHHhhcCCCCHHH----HHHHHHH--cC
Confidence 35789999999987665543 46999999999996521 23555433 3344432 34
Q ss_pred CCcEEEEecccccH-----HHHHHHHHHHcC
Q 004877 561 PKTLFLIGSYTIGK-----ERLFLEVARVLR 586 (725)
Q Consensus 561 ~~~~vlIp~~slGr-----eqll~eLa~~l~ 586 (725)
.+. +++.+|+..+ ++++.++.+.|.
T Consensus 261 ~k~-lvL~H~s~~y~~~~~~~~~~~~~~~~~ 290 (303)
T TIGR02649 261 VGK-LIITHVSSRYDDKGCQHLLRECRSIFP 290 (303)
T ss_pred CCE-EEEEEeccccCCccHHHHHHHHHHHCC
Confidence 554 4444455432 234455555564
No 13
>PRK02113 putative hydrolase; Provisional
Probab=99.56 E-value=1.1e-13 Score=144.26 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=103.5
Q ss_pred CCCceEeCCcccc--------CCCccEEEeccCchhhhCChhhhc-----CCceEEeCHHHHHHHHHHhCC-------C-
Q 004877 399 PGTPFRVDAFKYL--------RGDCSHWFLTHFHMDHYQGLTRSF-----HHGKIYCSLITARLVNMKIGI-------P- 457 (725)
Q Consensus 399 pg~~~~ID~f~~~--------~~~idaIfLTHaH~DHigGLp~~~-----~~~pIY~s~~T~~ll~~~lg~-------~- 457 (725)
.+..+.||+.... ..++++|||||.|.||++||+.+. ...+||+++.+.+.+...++. +
T Consensus 43 ~~~~iLiD~G~g~~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~ 122 (252)
T PRK02113 43 EGARILIDCGPDFREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMPYCFVEHSYPG 122 (252)
T ss_pred CCeEEEEECCchHHHHHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCCeeeccCCCCC
Confidence 4556777776431 146899999999999999998432 347899999999888765321 1
Q ss_pred --CcceEEecCCCEEEECCEEEEEEecccC-CCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCC
Q 004877 458 --WDRLQVLPLNQKTTIAGIDVTCLEANHC-PGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYC 534 (725)
Q Consensus 458 --~~~~~~l~~ge~~~Iggv~Vt~~~agH~-pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~ 534 (725)
...++.++.++++.+++++|+++++.|. ..+++|++. +++|+||+...++.... ...++|+||+|+++.
T Consensus 123 ~~~~~~~~~~~g~~~~~~~~~i~~~~~~H~~~~~~gy~i~-----~i~y~~Dt~~~~~~~~~---~~~~~DlLi~e~~~~ 194 (252)
T PRK02113 123 VPNIPLREIEPDRPFLVNHTEVTPLRVMHGKLPILGYRIG-----KMAYITDMLTMPEEEYE---QLQGIDVLVMNALRI 194 (252)
T ss_pred CcceeeEEcCCCCCEEECCeEEEEEEecCCCccEEEEEeC-----CEEEccCCCCCCHHHHH---HhcCCCEEEEhhhcC
Confidence 1246778889999999999999999995 458899983 49999999875443222 135899999999985
Q ss_pred CCCCCCCCHHHHH
Q 004877 535 NPLYDFPKQEAVI 547 (725)
Q Consensus 535 ~~~~~~p~~~e~~ 547 (725)
.....|.+.++++
T Consensus 195 ~~~~~H~t~~~a~ 207 (252)
T PRK02113 195 APHPTHQSLEEAL 207 (252)
T ss_pred CCCCCcCCHHHHH
Confidence 4444555554444
No 14
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=99.55 E-value=2.7e-14 Score=131.45 Aligned_cols=102 Identities=45% Similarity=0.758 Sum_probs=81.5
Q ss_pred ccccccCCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcch---h-hhcCceEEEEeccC
Q 004877 609 IQWFTTNEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGR---R-WQQGTIIRYEVPYS 684 (725)
Q Consensus 609 ~~~it~~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr---~-~~~G~~~v~~vpyS 684 (725)
.+.||.++.+++||+|++..+. ...+..+...+..++..+|+|.||||.+....+..... . ...+...++.||||
T Consensus 4 ~~~~T~d~~~t~iHvv~~~~~~-~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~~~~~~~~~~~VPYS 82 (110)
T PF07522_consen 4 SSLFTTDPSETRIHVVPMGQLS-KETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSLQSRGNVRIYRVPYS 82 (110)
T ss_pred hceeecCCCCCeEEEEECCcCC-HHHHHHHHHhhcccCCCeEEEEeCccccccCCCccccccccccccCCCceEEEEecc
Confidence 3578999999999999988775 56777776767778899999999999886543322211 0 13445567999999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeeCC
Q 004877 685 EHCSFTELKEFVKFVSPEHIIPSVNND 711 (725)
Q Consensus 685 ~HAs~~EL~~fV~~lrPk~VIPtv~hg 711 (725)
+||||.||++||+.++|++|||+|+.+
T Consensus 83 eHSSf~EL~~Fv~~l~P~~IiPtV~~~ 109 (110)
T PF07522_consen 83 EHSSFSELKEFVSFLKPKKIIPTVNVS 109 (110)
T ss_pred cCCCHHHHHHHHHhcCCcEEEccccCC
Confidence 999999999999999999999999865
No 15
>PRK02126 ribonuclease Z; Provisional
Probab=99.54 E-value=7.8e-14 Score=151.81 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=105.3
Q ss_pred CCcccCCCCcccC--CCCceEeCCccccC------CCccEEEeccCchhhhCChhhhc-------CCceEEeCHHHHHHH
Q 004877 386 GRKHKDIPTWCCV--PGTPFRVDAFKYLR------GDCSHWFLTHFHMDHYQGLTRSF-------HHGKIYCSLITARLV 450 (725)
Q Consensus 386 ~gk~~~~p~~~~i--pg~~~~ID~f~~~~------~~idaIfLTHaH~DHigGLp~~~-------~~~pIY~s~~T~~ll 450 (725)
.|.+++.-.|... .|..+.||+..... .++++|||||.|.||++|++.+. ...+||+++.+.+.+
T Consensus 11 ~g~~~dn~~~l~~~~~~~~iLiD~G~~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l 90 (334)
T PRK02126 11 NGPFDDPGLYVDFLFERRALLFDLGDLHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQV 90 (334)
T ss_pred cCCCCCcEEEEEECCCCeEEEEcCCCHHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHH
Confidence 4555555455443 36778999885211 47999999999999999999532 136899999999998
Q ss_pred HHHhC-CCC---------cceEEec----------------------------CCCEEEECCEEEEEEecccCCCCeEEE
Q 004877 451 NMKIG-IPW---------DRLQVLP----------------------------LNQKTTIAGIDVTCLEANHCPGSIIIL 492 (725)
Q Consensus 451 ~~~lg-~~~---------~~~~~l~----------------------------~ge~~~Iggv~Vt~~~agH~pGS~~fl 492 (725)
+..+. ..+ ..+..++ .+..+..++++|+++++.|...+++|+
T Consensus 91 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~vp~~gy~ 170 (334)
T PRK02126 91 EHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGIPCLAFA 170 (334)
T ss_pred HHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCCceeEEE
Confidence 87664 111 1122221 122345579999999999988899999
Q ss_pred Eecc------------------------------------------------------------------CCeEEEEecc
Q 004877 493 FEPQ------------------------------------------------------------------NGKAVLHTGD 506 (725)
Q Consensus 493 Ie~~------------------------------------------------------------------~Gk~IlYTGD 506 (725)
|+.. .|++|+|+||
T Consensus 171 ~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gD 250 (334)
T PRK02126 171 LEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTD 250 (334)
T ss_pred EEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECC
Confidence 9831 3668999999
Q ss_pred cCCChhhhhhcccCCCCccEEEEecCCCCC
Q 004877 507 FRFSEEMASMSVLQTCPIHTLILDTTYCNP 536 (725)
Q Consensus 507 ~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~ 536 (725)
+++.++....-.-...++|+||+||||...
T Consensus 251 T~~~~~~~~~l~~~a~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 251 IGYTEENLARIVELAAGVDLLFIEAVFLDE 280 (334)
T ss_pred CCCCcccHHHHHHHHcCCCEEEEEcccChH
Confidence 998864211100014699999999999864
No 16
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.52 E-value=2.2e-13 Score=134.73 Aligned_cols=114 Identities=31% Similarity=0.439 Sum_probs=90.8
Q ss_pred CccEEEeccCchhhhCChhhhc-----CCceEEeCHHHHHHHHH-HhCC-------CCcceEEecCCCEEEECCEEEEEE
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSF-----HHGKIYCSLITARLVNM-KIGI-------PWDRLQVLPLNQKTTIAGIDVTCL 480 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~-----~~~pIY~s~~T~~ll~~-~lg~-------~~~~~~~l~~ge~~~Iggv~Vt~~ 480 (725)
++++|||||.|.||+.||+.+. ...+||+++.+.+.+.. .++. ....+..+..++.+++++++|+++
T Consensus 29 ~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 108 (194)
T PF12706_consen 29 DIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEIGDFRITPF 108 (194)
T ss_dssp CEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEETTEEEEEE
T ss_pred CCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEeceEEEEEE
Confidence 7899999999999999977322 12389999999998884 2221 113466788888999999999999
Q ss_pred ecccCCCCeE----EEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCC
Q 004877 481 EANHCPGSII----ILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCN 535 (725)
Q Consensus 481 ~agH~pGS~~----flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~ 535 (725)
++.|..+..+ |+|+. +|++|+|+||+.+ . ... + .++|+||+||+|..
T Consensus 109 ~~~H~~~~~~~~~g~~i~~-~~~~i~~~gD~~~--~-~~~--~--~~~D~li~~~~~~~ 159 (194)
T PF12706_consen 109 PANHGPPSYGGNKGFVIEP-DGKKIFYSGDTNY--D-FEE--L--KNIDLLILECGYID 159 (194)
T ss_dssp EEESSSCCEEECCEEEEEE-TTEEEEEETSSSS--C-HHH--H--TTBSEEEEEBCBSS
T ss_pred eccccccccccCceEEEec-CCcceEEeeccch--h-hhh--h--ccCCEEEEeCCCcc
Confidence 9999988887 99995 8999999999999 2 222 2 57999999999983
No 17
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.50 E-value=3.1e-13 Score=145.29 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=89.0
Q ss_pred CccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhC---C----CCcceEEecCCCEEEEC---CEEEEEEe
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIG---I----PWDRLQVLPLNQKTTIA---GIDVTCLE 481 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg---~----~~~~~~~l~~ge~~~Ig---gv~Vt~~~ 481 (725)
++++|||||.|+||+.||+.+. ..++||+++.+.+.+...+. . ....++.+..+++++++ +++|++++
T Consensus 80 ~ldav~lTH~H~DHi~Gl~~l~~~~~l~Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~ 159 (302)
T PRK05184 80 PIAAVVLTDGQIDHTTGLLTLREGQPFPVYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFP 159 (302)
T ss_pred cccEEEEeCCchhhhhChHhhccCCCeEEEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEE
Confidence 6999999999999999998643 24789999999988875421 1 11245677888888886 89999999
Q ss_pred ccc-------------CCCCeEEEEe-ccCCeEEEEeccc-CCChhhhhhcccCCCCccEEEEecCC
Q 004877 482 ANH-------------CPGSIIILFE-PQNGKAVLHTGDF-RFSEEMASMSVLQTCPIHTLILDTTY 533 (725)
Q Consensus 482 agH-------------~pGS~~flIe-~~~Gk~IlYTGD~-~~~~~~~~~~~l~~~~~DlLIlEaTy 533 (725)
+.| ...+++|+|+ ..+|++++|++|+ .+.+.+... ..++|+||+|||+
T Consensus 160 v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~~----~~gaDlli~da~~ 222 (302)
T PRK05184 160 VPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDALRAR----LAGADCVLFDGTL 222 (302)
T ss_pred cCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHHHHH----HhcCCEEEEeCCC
Confidence 975 3468999995 2368889999777 455544433 3589999999994
No 18
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.49 E-value=3.8e-13 Score=144.63 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=88.5
Q ss_pred CCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHH--hCC-C-C-cceEEecCCCEEEEC-----CEEEEEE
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMK--IGI-P-W-DRLQVLPLNQKTTIA-----GIDVTCL 480 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~--lg~-~-~-~~~~~l~~ge~~~Ig-----gv~Vt~~ 480 (725)
.+|++|||||.|.||+.||+.+. ..++||+++.|.+.++.. ++. + + ..++.++.++++.++ +++|++|
T Consensus 78 ~~IdaI~lTH~H~DHi~GL~~L~~~~~lpVya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f 157 (302)
T TIGR02108 78 TPIAGVVLTDGEIDHTTGLLTLREGQPFTLYATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPF 157 (302)
T ss_pred ccCCEEEEeCCCcchhhCHHHHcCCCCceEEECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEE
Confidence 46899999999999999999543 358999999999988641 111 1 0 123567788888774 5999999
Q ss_pred ecc--------c------CCCCeEEEEeccC--CeEEEEecccCCChhhhhhcccCCCCccEEEEecCC
Q 004877 481 EAN--------H------CPGSIIILFEPQN--GKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTY 533 (725)
Q Consensus 481 ~ag--------H------~pGS~~flIe~~~--Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy 533 (725)
++. | ...+++|+|+. + |++++|++|++..++..... ..++|+||+|++|
T Consensus 158 ~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~-~~~g~~~~y~tD~g~~~~~~~~~---l~~~d~liida~~ 222 (302)
T TIGR02108 158 AVPGKAPLYSEHRAGDPHPGDTLGLKIED-GTTGKRLFYIPGCAEITDDLKAR---MAGADLVFFDGTL 222 (302)
T ss_pred EcCCCCCccccccccCCCCCCcEEEEEEe-CCCCcEEEEECCCCCCCHHHHHH---HhCCCEEEEeCCC
Confidence 998 5 13689999995 6 78999999998554433331 3589999999994
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.43 E-value=4.9e-12 Score=129.34 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=97.6
Q ss_pred cCCCCceEeCCccc---------cCCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhCCCCcceEEec
Q 004877 397 CVPGTPFRVDAFKY---------LRGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIGIPWDRLQVLP 465 (725)
Q Consensus 397 ~ipg~~~~ID~f~~---------~~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~ 465 (725)
...|..+.||++.. ...++|+|||||.|.||++++..+. ...+||++..+...+... +. ..+..++
T Consensus 14 ~~~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~--~~~~~~~ 90 (228)
T PRK00685 14 ETGGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAKRTGATVIANAELANYLSEK-GV--EKTHPMN 90 (228)
T ss_pred EECCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHHHhCCCEEEEeHHHHHHHHhc-CC--Cceeecc
Confidence 44566677776421 1136999999999999999987543 357899999888776543 32 2567788
Q ss_pred CCCEEEECCEEEEEEecccCCC------------CeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecC
Q 004877 466 LNQKTTIAGIDVTCLEANHCPG------------SIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTT 532 (725)
Q Consensus 466 ~ge~~~Iggv~Vt~~~agH~pG------------S~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaT 532 (725)
.++.+.+++++|+++++.|... ..+|+|+. ++++|+|+||+.+.+++.... ...++|++++...
T Consensus 91 ~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~-~~~~i~~~GDt~~~~~~~~~~--~~~~~D~~~~~~~ 166 (228)
T PRK00685 91 IGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITF-EGKTIYHAGDTGLFSDMKLIG--ELHKPDVALLPIG 166 (228)
T ss_pred CCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEE-CCeEEEEecCccchhHHHHHH--HhhCCCEEEEecC
Confidence 8999999999999999999543 58999996 678999999999887654332 1247899998653
No 20
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.42 E-value=1.4e-12 Score=137.47 Aligned_cols=170 Identities=14% Similarity=0.016 Sum_probs=109.3
Q ss_pred CCCcccCCCCceEeC-CccccC-------CCccEEEeccCchhhhCChhhhc----------CCceEEeCHHHHHHHHHH
Q 004877 392 IPTWCCVPGTPFRVD-AFKYLR-------GDCSHWFLTHFHMDHYQGLTRSF----------HHGKIYCSLITARLVNMK 453 (725)
Q Consensus 392 ~p~~~~ipg~~~~ID-~f~~~~-------~~idaIfLTHaH~DHigGLp~~~----------~~~pIY~s~~T~~ll~~~ 453 (725)
+..|..++-..+..| +..... ..+++|||||+|.||++||+..+ ....||.|+.+.+.++..
T Consensus 10 ~~t~~~~~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~ 89 (277)
T TIGR02650 10 FFSTIIYSPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEET 89 (277)
T ss_pred heEEEEECchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHH
Confidence 334667777778888 554332 35899999999999999997311 124599999987776621
Q ss_pred ---h---CC---CCcceEEecCCCEEEEC-C---EEEEEEecccCC---CCeEEEEecc---------------------
Q 004877 454 ---I---GI---PWDRLQVLPLNQKTTIA-G---IDVTCLEANHCP---GSIIILFEPQ--------------------- 496 (725)
Q Consensus 454 ---l---g~---~~~~~~~l~~ge~~~Ig-g---v~Vt~~~agH~p---GS~~flIe~~--------------------- 496 (725)
+ .. ......+++.++.+.+. + ..|++|++.|.. .|.||.|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~ 169 (277)
T TIGR02650 90 SEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLKE 169 (277)
T ss_pred HHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHHHH
Confidence 1 10 01123445556666665 3 899999999974 5888877521
Q ss_pred ----------CCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCC----CCCCHHHHHHHHHHHHHHhhcCCC
Q 004877 497 ----------NGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLY----DFPKQEAVIQFVIEAIQAESFNPK 562 (725)
Q Consensus 497 ----------~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~----~~p~~~e~~~~l~e~I~~~~~~~~ 562 (725)
.+++|+|+|||++... + ...++|+||+||||.+... .|.+- ..+++..+. +..+
T Consensus 170 ~gg~~~t~e~~~~~vvysGDT~~~~~----~--~a~~adlLIhEaTf~d~~~~~~~gH~t~----~eaa~~A~~--a~vk 237 (277)
T TIGR02650 170 EGGDDFTREEHHKILLIIGDDLAADD----E--EEEGGEELIHECCFFDDADDRRKKHAAA----DDEMEESKK--AAGK 237 (277)
T ss_pred hCCccccccccCcEEEEeCCCCCCCh----H--HhcCCCEEEEecccccccccccCCCCCH----HHHHHHHHH--cCCC
Confidence 1368999999998854 1 1459999999999987532 34443 333343432 3344
Q ss_pred cEEEEecccccH
Q 004877 563 TLFLIGSYTIGK 574 (725)
Q Consensus 563 ~~vlIp~~slGr 574 (725)
. +++.+|+.-+
T Consensus 238 ~-LiLtH~Ssry 248 (277)
T TIGR02650 238 K-KIILHHISRR 248 (277)
T ss_pred E-EEEEeecccc
Confidence 4 4454455444
No 21
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.39 E-value=2.9e-13 Score=112.20 Aligned_cols=63 Identities=48% Similarity=0.676 Sum_probs=59.3
Q ss_pred CCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHH
Q 004877 231 AVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIK 293 (725)
Q Consensus 231 ~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~ 293 (725)
.|+..+|.+||.++||++|.+.|.++.+|++.|+.|+++||.+|||+.+|||+||+.+|+.||
T Consensus 2 ~W~~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 2 EWSVEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp GTSHHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 488899999999999999999998888899999999999999999999999999999999986
No 22
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.39 E-value=4.5e-12 Score=135.72 Aligned_cols=188 Identities=22% Similarity=0.223 Sum_probs=114.0
Q ss_pred CCCCceEeCCcccc----------CCCccEEEeccCchhhhCChhhhc--------C-CceEEeCHHHHHHHHHHhCCC-
Q 004877 398 VPGTPFRVDAFKYL----------RGDCSHWFLTHFHMDHYQGLTRSF--------H-HGKIYCSLITARLVNMKIGIP- 457 (725)
Q Consensus 398 ipg~~~~ID~f~~~----------~~~idaIfLTHaH~DHigGLp~~~--------~-~~pIY~s~~T~~ll~~~lg~~- 457 (725)
+.|..+.+|.+... ..++++|||||.|.||+.||+.++ . ...||++....+.+...+...
T Consensus 27 ~~~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~ 106 (292)
T COG1234 27 LEGEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSY 106 (292)
T ss_pred eCCeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhhhhhhcc
Confidence 36667778888431 137899999999999999999321 1 258999988777666432110
Q ss_pred ----C-cceEEec----------C-----------CCEEEEC------------CEEEEEEecccC----CCCeEEEEec
Q 004877 458 ----W-DRLQVLP----------L-----------NQKTTIA------------GIDVTCLEANHC----PGSIIILFEP 495 (725)
Q Consensus 458 ----~-~~~~~l~----------~-----------ge~~~Ig------------gv~Vt~~~agH~----pGS~~flIe~ 495 (725)
+ ...+.+. . .+....+ +..++.+.++|+ .-...+++..
T Consensus 107 ~~~~~~i~~~e~~~~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~ 186 (292)
T COG1234 107 SKLTYEIIGHEIEEDAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITPADRIGE 186 (292)
T ss_pred cccceEEEEEEeccCceEEEEEecCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHhCCCceeeeecCHHHhccc
Confidence 0 0111111 0 0000112 566777778886 3333344432
Q ss_pred -cCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCCC------CCCHHHHHHHHHHHHHHhhcCCCcEEEEe
Q 004877 496 -QNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYD------FPKQEAVIQFVIEAIQAESFNPKTLFLIG 568 (725)
Q Consensus 496 -~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~~------~p~~~e~~~~l~e~I~~~~~~~~~~vlIp 568 (725)
..|++|+|+|||+++..++.. .+++|+||+||||.+..-. |.+ ..++.++.++ ++.+.++|..
T Consensus 187 ~~~G~~v~ysGDT~p~~~~~~~----a~~aDlLiHEat~~~~~~~~a~~~~HsT----~~eAa~iA~~--A~vk~LiLtH 256 (292)
T COG1234 187 PRKGKSVVYSGDTRPCDELIDL----AKGADLLIHEATFEDDLEDLANEGGHST----AEEAAEIAKE--AGVKKLILTH 256 (292)
T ss_pred cCCCcEEEEECCCCCCHHHHHH----hcCCCEEEEeccCCchhhhHHhhcCCCC----HHHHHHHHHH--cCCCeEEEEe
Confidence 246799999999999988766 3799999999999763211 444 3444455543 4555566544
Q ss_pred ccccc---HHHHHHHHHHHcCCcEEEechH
Q 004877 569 SYTIG---KERLFLEVARVLRKKIYVNAAK 595 (725)
Q Consensus 569 ~~slG---reqll~eLa~~l~~~I~V~~~~ 595 (725)
..+.. .++++.++...|..++++....
T Consensus 257 ~s~ry~~~~~~~~~ea~~~f~~~~~~a~D~ 286 (292)
T COG1234 257 FSPRYPKDDEELLKEARAIFPGETIVARDG 286 (292)
T ss_pred ecccccchHHHHHHHHHHhCCCceEEeccc
Confidence 22222 3455566767776677766543
No 23
>PRK00055 ribonuclease Z; Reviewed
Probab=99.33 E-value=5.6e-12 Score=131.58 Aligned_cols=181 Identities=19% Similarity=0.219 Sum_probs=104.5
Q ss_pred cCCCCceEeCCcccc----------CCCccEEEeccCchhhhCChhhhc---------CCceEEeCHHHHHHHHHHhCCC
Q 004877 397 CVPGTPFRVDAFKYL----------RGDCSHWFLTHFHMDHYQGLTRSF---------HHGKIYCSLITARLVNMKIGIP 457 (725)
Q Consensus 397 ~ipg~~~~ID~f~~~----------~~~idaIfLTHaH~DHigGLp~~~---------~~~pIY~s~~T~~ll~~~lg~~ 457 (725)
...+..+.||+.... ..++++|||||.|.||++||+.++ ...+||+++.+...+...+...
T Consensus 26 ~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~ 105 (270)
T PRK00055 26 RLGGELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRAS 105 (270)
T ss_pred EECCcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHh
Confidence 345566788877431 136899999999999999998432 1367999999888776432110
Q ss_pred -Cc-----------ceE-------EecCCCEE-EE-CCEEEEEEeccc--CCCCeEEEEeccCCeEEEEecccCCChhhh
Q 004877 458 -WD-----------RLQ-------VLPLNQKT-TI-AGIDVTCLEANH--CPGSIIILFEPQNGKAVLHTGDFRFSEEMA 514 (725)
Q Consensus 458 -~~-----------~~~-------~l~~ge~~-~I-ggv~Vt~~~agH--~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~ 514 (725)
+. .+. .+..+..+ .+ .+.++.. .+| +.++.+|+++. +|++|+|+||+++.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~i~~~~~~~~~~-~g~~~~y~~Dt~~~~~~~ 182 (270)
T PRK00055 106 GSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRGEDVTL--EDGRIINPADVLGPPR-KGRKVAYCGDTRPCEALV 182 (270)
T ss_pred hceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCCCeEEe--CCCcEEeHHHeeccCC-CCcEEEEeCCCCCcHHHH
Confidence 00 000 00011100 01 1223332 234 34678899985 788899999999987654
Q ss_pred hhcccCCCCccEEEEecCCCCCC------CCCCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccc----HHHHHHHHHHH
Q 004877 515 SMSVLQTCPIHTLILDTTYCNPL------YDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIG----KERLFLEVARV 584 (725)
Q Consensus 515 ~~~~l~~~~~DlLIlEaTy~~~~------~~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~slG----reqll~eLa~~ 584 (725)
.. ..++|+||+||||.... ..|.+.++++ +++++ ++++. +++..++.. .+++..++.+.
T Consensus 183 ~~----~~~~d~li~E~~~~~~~~~~~~~~~H~~~~~a~----~~~~~--~~~~~-~vl~H~~~~~~~~~~~~~~~~~~~ 251 (270)
T PRK00055 183 EL----AKGADLLVHEATFGDEDEELAKEYGHSTARQAA----EIAKE--AGVKR-LILTHFSPRYTGDPEELLKEAREI 251 (270)
T ss_pred HH----hCCCCEEEEeccCCcchhhHHhhcCCCCHHHHH----HHHHH--cCCCE-EEEEeeccccCCCHHHHHHHHHHH
Confidence 33 35899999999997642 2355544433 33332 34444 444445432 23444455444
Q ss_pred cCCcEEEe
Q 004877 585 LRKKIYVN 592 (725)
Q Consensus 585 l~~~I~V~ 592 (725)
+ .+|.+.
T Consensus 252 ~-~~v~~a 258 (270)
T PRK00055 252 F-PNTELA 258 (270)
T ss_pred c-CCcEEc
Confidence 5 244443
No 24
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.31 E-value=1.3e-12 Score=108.95 Aligned_cols=64 Identities=42% Similarity=0.647 Sum_probs=61.4
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCCH-HHHhcCChhhhccCCCCCCChhHHHHHHHHHHH
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEIDW-DTLQWLTEEDLIGIGVTALGPRKKILHTLCEIK 293 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~-~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~ 293 (725)
..|+..+|.+||.++||.+|.+.|.+++|++ +.|..|+++||++|||+..|||+||+++|++||
T Consensus 2 ~~w~~~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 2 STWSPEDVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp GGHCHHHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 3588899999999999999999999999999 999999999999999999999999999999986
No 25
>PRK04286 hypothetical protein; Provisional
Probab=99.31 E-value=2e-11 Score=131.05 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=116.8
Q ss_pred CcccCCCCceEeCCcccc---------------------------CCCccEEEeccCchhhhCChhhh-cC------Cce
Q 004877 394 TWCCVPGTPFRVDAFKYL---------------------------RGDCSHWFLTHFHMDHYQGLTRS-FH------HGK 439 (725)
Q Consensus 394 ~~~~ipg~~~~ID~f~~~---------------------------~~~idaIfLTHaH~DHigGLp~~-~~------~~p 439 (725)
.+....+..+.||++... ..++|+|||||.|.||+.|+... |. ..+
T Consensus 18 ~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~ 97 (298)
T PRK04286 18 TFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKE 97 (298)
T ss_pred EEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccccccchHH
Confidence 344556677888887332 23689999999999999887642 11 245
Q ss_pred EEeCHHHHHH-----HH--HHh---CC----C-CcceEEecCCCEEEECCEEEEEE-ecccC-C-CCeEE----EEeccC
Q 004877 440 IYCSLITARL-----VN--MKI---GI----P-WDRLQVLPLNQKTTIAGIDVTCL-EANHC-P-GSIII----LFEPQN 497 (725)
Q Consensus 440 IY~s~~T~~l-----l~--~~l---g~----~-~~~~~~l~~ge~~~Iggv~Vt~~-~agH~-p-GS~~f----lIe~~~ 497 (725)
||++..+... +. ..+ .. . ......+..++.+.+++++|+++ ++.|. + .+++| +|+. +
T Consensus 98 iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~-g 176 (298)
T PRK04286 98 IYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIMVRISD-G 176 (298)
T ss_pred HhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEEEEEEe-C
Confidence 6665444311 00 000 00 0 01234567788999999999966 77994 3 35555 5564 7
Q ss_pred CeEEEEecccC--CChhhhhhcccCCCCccEEEEecC--CCC-CCCCCCCHHHHHHHHHHHHHHhhcCCCcEEEEecccc
Q 004877 498 GKAVLHTGDFR--FSEEMASMSVLQTCPIHTLILDTT--YCN-PLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTI 572 (725)
Q Consensus 498 Gk~IlYTGD~~--~~~~~~~~~~l~~~~~DlLIlEaT--y~~-~~~~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~sl 572 (725)
|++++|+||+. ....+... +...++|+|++++. |.. ....+...+.+.+.+.++++. +.+.++|...-+.
T Consensus 177 g~~~~~~gDt~~~~~~~~~~~--l~~~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~~~~l~~~---~~k~liLtHHls~ 251 (298)
T PRK04286 177 DESFVFASDVQGPLNDEAVEF--ILEKKPDVVIIGGPPTYLLGRRLSEEDLEKGIENLEEIVKN---TPETLILDHHLLR 251 (298)
T ss_pred CEEEEEECCCCCCCCHHHHHH--HhcCCCCEEEeCCcchhhhhhhhccccHHHHHHHHHHHHhc---CCCEEEEeccccc
Confidence 88999999999 34444333 33459999999983 443 222233455666667666652 3444444423322
Q ss_pred --cHHHHH---HHHHHHcCCcEEEechH
Q 004877 573 --GKERLF---LEVARVLRKKIYVNAAK 595 (725)
Q Consensus 573 --Greqll---~eLa~~l~~~I~V~~~~ 595 (725)
+..++. .+.|+..+++|+.....
T Consensus 252 ~~n~~~~~~~l~~~~~~~~~~~~~~~~~ 279 (298)
T PRK04286 252 DKNYREKLKELYERAEDRGVRVLTAAEF 279 (298)
T ss_pred cCCcHHHHHHHHHHHhhcCceEEeHHHH
Confidence 223333 44466777787776543
No 26
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=99.27 E-value=7e-11 Score=134.01 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=135.7
Q ss_pred ccCCCCceEeCCccc-------------cCCCccEEEeccCchhhhCChhhhcC----CceEEeCHHHHHHHHHH----h
Q 004877 396 CCVPGTPFRVDAFKY-------------LRGDCSHWFLTHFHMDHYQGLTRSFH----HGKIYCSLITARLVNMK----I 454 (725)
Q Consensus 396 ~~ipg~~~~ID~f~~-------------~~~~idaIfLTHaH~DHigGLp~~~~----~~pIY~s~~T~~ll~~~----l 454 (725)
..+.|..|.||++-. ..+.||||+|||.-.=|+||||+.+. +++||++-++..+-+.. +
T Consensus 20 lqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~~ 99 (764)
T KOG1135|consen 20 LQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDLY 99 (764)
T ss_pred EEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHHH
Confidence 467778888887621 22468999999999999999997543 47999999987765421 0
Q ss_pred ----C-------------CCCcceEEecCCCEEEE----CCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhh
Q 004877 455 ----G-------------IPWDRLQVLPLNQKTTI----AGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEM 513 (725)
Q Consensus 455 ----g-------------~~~~~~~~l~~ge~~~I----ggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~ 513 (725)
. ..+..+..+.|.+++.+ .|++|++++|||++|...|.|.. .|..|+|+-|+.+..+.
T Consensus 100 ~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k-~~E~ivYavd~NHkKe~ 178 (764)
T KOG1135|consen 100 RSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISK-VGEDIVYAVDFNHKKER 178 (764)
T ss_pred hcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEe-cCceEEEEEecccchhc
Confidence 1 12456888999999988 36799999999999999999985 67889999999887553
Q ss_pred hh-hcccC-CCCccEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHH
Q 004877 514 AS-MSVLQ-TCPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFL 579 (725)
Q Consensus 514 ~~-~~~l~-~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~ 579 (725)
-. ...|. ..++.+||+++.... |..+.+...-+.+.+.+.. ++..+|.|+||+.+-||--++.
T Consensus 179 HLNG~~l~~l~RPsllITda~~~~--~~~~~rkkRDe~f~d~v~~-~L~~~G~VlipVDtAgRvLELa 243 (764)
T KOG1135|consen 179 HLNGCSLSGLNRPSLLITDANHAL--YSQPRRKKRDEQFLDTVLK-TLRSGGNVLIPVDTAGRVLELA 243 (764)
T ss_pred ccCCccccccCCcceEEecccccc--ccccchhHHHHHHHHHHHH-HhcCCCcEEEEecccHHHHHHH
Confidence 22 21122 468899999998654 4456666666677777764 7889999999999999954333
No 27
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=99.23 E-value=9e-12 Score=101.85 Aligned_cols=62 Identities=45% Similarity=0.642 Sum_probs=59.4
Q ss_pred CCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHH
Q 004877 232 VDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIK 293 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~ 293 (725)
|+..+|.+||..+|+++|.+.|.+++++++.|+.|+++||++|||+.+|||+||+.+|+.++
T Consensus 2 w~~~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l~ 63 (63)
T cd00166 2 WSPEDVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQKLK 63 (63)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 77889999999999999999999999999999999999999999998999999999998864
No 28
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=99.15 E-value=4.8e-11 Score=98.61 Aligned_cols=65 Identities=40% Similarity=0.630 Sum_probs=61.6
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCC-hhhhccCCCCCCChhHHHHHHHHHHHH
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLT-EEDLIGIGVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt-~~DL~~lGI~~~G~RkkIl~aI~~l~~ 294 (725)
..|+..+|.+||..+||.+|.+.|.+++|++..++.++ .+||++|||..+|||+||+.+|..++.
T Consensus 2 ~~w~~~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~~ 67 (68)
T smart00454 2 SQWSPESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLKD 67 (68)
T ss_pred CCCCHHHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence 35888999999999999999999999999999999999 999999999999999999999999874
No 29
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.14 E-value=1.4e-09 Score=119.57 Aligned_cols=127 Identities=21% Similarity=0.284 Sum_probs=93.1
Q ss_pred CCceEeCCccccCCCccEEEeccCchhhhCC--hhhh---c-CCceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEEC
Q 004877 400 GTPFRVDAFKYLRGDCSHWFLTHFHMDHYQG--LTRS---F-HHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIA 473 (725)
Q Consensus 400 g~~~~ID~f~~~~~~idaIfLTHaH~DHigG--Lp~~---~-~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Ig 473 (725)
..++.||++.. +.+|+|||||.|.||+.. +..+ . ...+++++..+.+++.. +|++..++..+..++.+.++
T Consensus 97 ~~p~~idp~~i--~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~-~Gvp~~rv~~v~~Ge~i~ig 173 (355)
T PRK11709 97 TQPFVLDPFAI--REIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIG-WGVPKERCIVVKPGDVVKVK 173 (355)
T ss_pred CCCcccCHHHC--CCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHh-cCCCcceEEEecCCCcEEEC
Confidence 34456776532 468999999999999942 2222 1 23668999888776553 46665678899999999999
Q ss_pred CEEEEEEecccC-----------C-----------CCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEec
Q 004877 474 GIDVTCLEANHC-----------P-----------GSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDT 531 (725)
Q Consensus 474 gv~Vt~~~agH~-----------p-----------GS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEa 531 (725)
+++|+++++.|. . .+++|+|+. +|++|+|+||+.+.+.+.... ...++|++++..
T Consensus 174 ~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~-~~~tvy~sGDT~~~~~~~~i~--~~~~iDvall~i 250 (355)
T PRK11709 174 DIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKT-PGGNIYHSGDSHYSNYFAKHG--NDHQIDVALGSY 250 (355)
T ss_pred CEEEEEEeccccccccccccccccccccccccCCcceEEEEEEe-CCeEEEEeCCCCccHHHHHHH--hcCCCCEEEecC
Confidence 999999999541 1 258899997 678999999999987654432 234799999855
Q ss_pred C
Q 004877 532 T 532 (725)
Q Consensus 532 T 532 (725)
.
T Consensus 251 G 251 (355)
T PRK11709 251 G 251 (355)
T ss_pred C
Confidence 3
No 30
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.05 E-value=6e-10 Score=108.05 Aligned_cols=98 Identities=28% Similarity=0.426 Sum_probs=77.5
Q ss_pred CCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHh---------CCCCcceEEecCCCEEEECCEEEEEEe
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKI---------GIPWDRLQVLPLNQKTTIAGIDVTCLE 481 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~l---------g~~~~~~~~l~~ge~~~Iggv~Vt~~~ 481 (725)
.++++||+||.|.||++|++... ...+||++..+.+.+.... ......+..+..++++.+++.++++++
T Consensus 40 ~~i~~i~iTH~H~DH~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (183)
T smart00849 40 KDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIH 119 (183)
T ss_pred hhhcEEEecccCcchhccHHHHHhCCCCcEEEchhhhHHHhccchhccccCcCCCCCccceecCCCCEEEeCCceEEEEE
Confidence 47899999999999999998543 3578999999988876321 112234567888999999988888888
Q ss_pred c-ccCCCCeEEEEeccCCeEEEEecccCCChhh
Q 004877 482 A-NHCPGSIIILFEPQNGKAVLHTGDFRFSEEM 513 (725)
Q Consensus 482 a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~ 513 (725)
+ +|++|+++|+++. .+++|+||+.+....
T Consensus 120 ~~~h~~~~~~~~~~~---~~vl~~gD~~~~~~~ 149 (183)
T smart00849 120 TPGHTPGSIVLYLPE---GKILFTGDLLFSGGI 149 (183)
T ss_pred CCCCCCCcEEEEECC---CCEEEECCeeeccCC
Confidence 7 8999999988873 469999999877553
No 31
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.01 E-value=1.6e-09 Score=120.79 Aligned_cols=91 Identities=20% Similarity=0.328 Sum_probs=74.8
Q ss_pred CCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEec-c-cCCC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEA-N-HCPG 487 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~a-g-H~pG 487 (725)
.++++||+||.|.||++|++.+ ++..+||+++.+...+...+...+ .+..+..++.+.+++.+++++.+ + |+||
T Consensus 68 ~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~-~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~ 146 (394)
T PRK11921 68 DKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTKNGAKSLKGHYHQDW-NFVVVKTGDRLEIGSNELIFIEAPMLHWPD 146 (394)
T ss_pred ccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECHHHHHHHHHHhCCCC-ceEEeCCCCEEeeCCeEEEEEeCCCCCCCC
Confidence 3689999999999999999953 456899999999888775544322 45678889999999999999977 3 9999
Q ss_pred CeEEEEeccCCeEEEEeccc
Q 004877 488 SIIILFEPQNGKAVLHTGDF 507 (725)
Q Consensus 488 S~~flIe~~~Gk~IlYTGD~ 507 (725)
+++++++. + +++||||+
T Consensus 147 ~~~~y~~~-~--~vLFsgD~ 163 (394)
T PRK11921 147 SMFTYLTG-D--NILFSNDA 163 (394)
T ss_pred ceEEEEcC-C--CEEEecCc
Confidence 99998863 2 49999997
No 32
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=98.99 E-value=5.8e-10 Score=112.04 Aligned_cols=64 Identities=39% Similarity=0.623 Sum_probs=60.0
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhh
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
-...|-.||..+||++|...|..+++||++|..||++||++|||..+|+||||+.||..++...
T Consensus 150 ~~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~r~~~ 213 (216)
T KOG4374|consen 150 LTEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKLRRSF 213 (216)
T ss_pred ccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccchhhhhcccccCcchhhhhhhhcccccc
Confidence 4567899999999999999999999999999999999999999999999999999999887643
No 33
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.92 E-value=5e-09 Score=109.75 Aligned_cols=98 Identities=23% Similarity=0.303 Sum_probs=75.5
Q ss_pred CceEeCCcccc---------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhCCCCcceEEecCCCE
Q 004877 401 TPFRVDAFKYL---------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQK 469 (725)
Q Consensus 401 ~~~~ID~f~~~---------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~ 469 (725)
..+.||+.... ..++++||+||.|.||++|+..+. ...+||++..+ .+ +. ..+.+..++.
T Consensus 21 ~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~~~V~~~~~~------~~--~~-~~~~v~~g~~ 91 (248)
T TIGR03413 21 QAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEE------RI--PG-ITHPVKDGDT 91 (248)
T ss_pred CEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCCCeEEecccc------cC--CC-CcEEeCCCCE
Confidence 56788887421 126899999999999999998542 23789998764 11 11 2356788999
Q ss_pred EEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 470 TTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 470 ~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
+.+++.+|+++.+ ||++|+++|+++. + +++|+||+-+.
T Consensus 92 ~~~g~~~i~v~~tpGHT~g~i~~~~~~--~-~~lftGDtl~~ 130 (248)
T TIGR03413 92 VTLGGLEFEVLAVPGHTLGHIAYYLPD--S-PALFCGDTLFS 130 (248)
T ss_pred EEECCEEEEEEECCCCCcccEEEEECC--C-CEEEEcCcccc
Confidence 9999999999987 7999999999873 2 49999999765
No 34
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.91 E-value=2e-09 Score=124.35 Aligned_cols=87 Identities=21% Similarity=0.384 Sum_probs=75.8
Q ss_pred CCCCCccccCCCCCCCCCCCcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHH
Q 004877 214 PRLEPEIDLGLGRSPQKAVDVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292 (725)
Q Consensus 214 ~~~~p~~~~~~~~~~~~~~~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l 292 (725)
....|.+...+..+. ....+.+|.+||++|+|++|.++|.++|+ +++.+.+++.+||..|||+..||+|||+.+|+.+
T Consensus 904 ~~~r~s~~lld~~~~-~~~~f~sv~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~m 982 (996)
T KOG0196|consen 904 ESPRPSQPLLDRSGS-DFTPFRSVGDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQAM 982 (996)
T ss_pred CCCCCcccccCCCCC-CCcccCCHHHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHHH
Confidence 344455555554433 77889999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHhhcccCC
Q 004877 293 KKEYSRAVE 301 (725)
Q Consensus 293 ~~~~~~~~~ 301 (725)
|.++.+..+
T Consensus 983 ~~q~~~~~~ 991 (996)
T KOG0196|consen 983 RAQMRQTQP 991 (996)
T ss_pred HHHhccCCC
Confidence 999987543
No 35
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.87 E-value=9.2e-09 Score=111.83 Aligned_cols=100 Identities=28% Similarity=0.277 Sum_probs=76.6
Q ss_pred CceEeCCcccc---------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhCCCCcceEEecCCCE
Q 004877 401 TPFRVDAFKYL---------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQK 469 (725)
Q Consensus 401 ~~~~ID~f~~~---------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~ 469 (725)
..+.||+.... ..++++||+||.|.||++|+..+. ...+||++......+. + ....+..++.
T Consensus 99 ~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~ga~V~g~~~~~~~i~---~----~d~~v~dGd~ 171 (329)
T PLN02398 99 TVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARYGAKVIGSAVDKDRIP---G----IDIVLKDGDK 171 (329)
T ss_pred EEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhcCCEEEEehHHhhhcc---C----CcEEeCCCCE
Confidence 34688886331 146899999999999999999543 2479999987654321 1 1256788999
Q ss_pred EEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 470 TTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 470 ~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
+.+++.+|+++.+ ||++|+++|++.. . .++|+||+-+.
T Consensus 172 i~lgg~~l~vi~tPGHT~GhI~~~~~~--~-~vLFtGDtLf~ 210 (329)
T PLN02398 172 WMFAGHEVLVMETPGHTRGHISFYFPG--S-GAIFTGDTLFS 210 (329)
T ss_pred EEECCeEEEEEeCCCcCCCCEEEEECC--C-CEEEECCCcCC
Confidence 9999999999888 9999999998863 2 38999999875
No 36
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.87 E-value=8.7e-09 Score=108.70 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=73.9
Q ss_pred CceEeCCcccc---------CCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcceEEecCCC
Q 004877 401 TPFRVDAFKYL---------RGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQ 468 (725)
Q Consensus 401 ~~~~ID~f~~~---------~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge 468 (725)
..+.||+.... ...+++||+||.|.||++|+..+ +...+||++.... . +. ..+.+..++
T Consensus 24 ~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~------~--~~-~~~~v~~gd 94 (258)
T PLN02469 24 DAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDN------V--KG-CTHPVENGD 94 (258)
T ss_pred eEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhc------C--CC-CCeEeCCCC
Confidence 45788887331 13689999999999999999843 3457999975421 1 11 125678889
Q ss_pred EEEECC-EEEEEEec-ccCCCCeEEEEeccC-CeEEEEecccCCC
Q 004877 469 KTTIAG-IDVTCLEA-NHCPGSIIILFEPQN-GKAVLHTGDFRFS 510 (725)
Q Consensus 469 ~~~Igg-v~Vt~~~a-gH~pGS~~flIe~~~-Gk~IlYTGD~~~~ 510 (725)
.+.+++ +.++++.+ ||++|+++|++.... ...++||||+-+.
T Consensus 95 ~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~ 139 (258)
T PLN02469 95 KLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFI 139 (258)
T ss_pred EEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccC
Confidence 999985 67888887 999999999986311 2348999999765
No 37
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.86 E-value=8.5e-09 Score=117.71 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=84.3
Q ss_pred CCcccCCCCceEeCCccc---------c----C-CCccEEEeccCchhhhCChhhhc---CCceEEeCHHHHHHHHHHhC
Q 004877 393 PTWCCVPGTPFRVDAFKY---------L----R-GDCSHWFLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIG 455 (725)
Q Consensus 393 p~~~~ipg~~~~ID~f~~---------~----~-~~idaIfLTHaH~DHigGLp~~~---~~~pIY~s~~T~~ll~~~lg 455 (725)
..|....+..+.||+... + . .+|++||+||.|.||++|++.+. +..+||+++.+...+.....
T Consensus 36 NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~~~~~ 115 (479)
T PRK05452 36 NSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHH 115 (479)
T ss_pred EEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHHHHHHHHHhhc
Confidence 334433445678887532 0 1 36899999999999999998543 46899999999888775543
Q ss_pred CCCcceEEecCCCEEEEC-CEEEEEEec--ccCCCCeEEEEeccCCeEEEEeccc
Q 004877 456 IPWDRLQVLPLNQKTTIA-GIDVTCLEA--NHCPGSIIILFEPQNGKAVLHTGDF 507 (725)
Q Consensus 456 ~~~~~~~~l~~ge~~~Ig-gv~Vt~~~a--gH~pGS~~flIe~~~Gk~IlYTGD~ 507 (725)
.+...+..+..++.+.++ +.+++++.+ +|+||+++++++. + ++|||||.
T Consensus 116 ~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~-~--~vLFsgD~ 167 (479)
T PRK05452 116 HPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTG-D--AVLFSNDA 167 (479)
T ss_pred CCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcC-C--CEEEeccc
Confidence 333356788999999998 578888888 4999999998873 3 49999996
No 38
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.82 E-value=5.4e-08 Score=105.86 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=96.7
Q ss_pred CCccEEEeccCchhhhCChhh----hc----CCceEEeCHHHHHHHHHHh-C-CCC--------------cceEEecCCC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTR----SF----HHGKIYCSLITARLVNMKI-G-IPW--------------DRLQVLPLNQ 468 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~----~~----~~~pIY~s~~T~~ll~~~l-g-~~~--------------~~~~~l~~ge 468 (725)
..|.++||||+|.||+.||-. .. ...+||+.+.|.+.++..+ . .-| ..+..+..++
T Consensus 78 ~~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~ 157 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGE 157 (335)
T ss_pred HhhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccc
Confidence 468899999999999999972 11 3467999999999998643 1 111 1223344443
Q ss_pred EEEEC-------------CEEEEEEecccCC-C-----CeEEEEeccC-CeEEEEecccCCChh--------hhh--hcc
Q 004877 469 KTTIA-------------GIDVTCLEANHCP-G-----SIIILFEPQN-GKAVLHTGDFRFSEE--------MAS--MSV 518 (725)
Q Consensus 469 ~~~Ig-------------gv~Vt~~~agH~p-G-----S~~flIe~~~-Gk~IlYTGD~~~~~~--------~~~--~~~ 518 (725)
...+. ...|++++..|.. - |.+|+|+... |..|+|.||+..+.- ++. .+.
T Consensus 158 ~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~ 237 (335)
T PF02112_consen 158 LIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPK 237 (335)
T ss_pred eeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhh
Confidence 33221 3567779999943 2 7999998532 578999999987531 111 122
Q ss_pred cCCCCccEEEEecCCCCCC-----CCCCCHHHHHHHHHHHHH
Q 004877 519 LQTCPIHTLILDTTYCNPL-----YDFPKQEAVIQFVIEAIQ 555 (725)
Q Consensus 519 l~~~~~DlLIlEaTy~~~~-----~~~p~~~e~~~~l~e~I~ 555 (725)
+...++..+++||.|.+.. |-|.+....++++..+.+
T Consensus 238 I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~ 279 (335)
T PF02112_consen 238 IASGKLKAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLAS 279 (335)
T ss_pred ccccccCEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHHh
Confidence 3457899999999998632 467666677777766554
No 39
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.80 E-value=1.5e-08 Score=106.30 Aligned_cols=98 Identities=27% Similarity=0.314 Sum_probs=73.5
Q ss_pred CCceEeCCcccc---------CCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcceEEecCC
Q 004877 400 GTPFRVDAFKYL---------RGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRLQVLPLN 467 (725)
Q Consensus 400 g~~~~ID~f~~~---------~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~g 467 (725)
+..+.||+.... ..++++||+||.|.||++|+..+ +...+||++..+.. .+ ..+.+..+
T Consensus 22 ~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~-----~~----~~~~v~~g 92 (251)
T PRK10241 22 GRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD-----KG----TTQVVKDG 92 (251)
T ss_pred CcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc-----cC----CceEeCCC
Confidence 345778877431 13578999999999999999853 44578999765421 01 23567788
Q ss_pred CEEEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCCh
Q 004877 468 QKTTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFSE 511 (725)
Q Consensus 468 e~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~~ 511 (725)
+.+.+++..++++.+ ||++|+++|+.+ .++||||+-+..
T Consensus 93 ~~i~ig~~~~~vi~tPGHT~ghi~~~~~-----~~lFtGDtlf~~ 132 (251)
T PRK10241 93 ETAFVLGHEFSVFATPGHTLGHICYFSK-----PYLFCGDTLFSG 132 (251)
T ss_pred CEEEeCCcEEEEEEcCCCCccceeeecC-----CcEEEcCeeccC
Confidence 999999999999887 999999999653 279999997653
No 40
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.78 E-value=2.6e-08 Score=97.15 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=73.3
Q ss_pred cccCCCCceEeCCcccc------CCCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCCCCcceEEecCCC
Q 004877 395 WCCVPGTPFRVDAFKYL------RGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQ 468 (725)
Q Consensus 395 ~~~ipg~~~~ID~f~~~------~~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge 468 (725)
.....|..+.+|+|... ..++|+|||||.|.||+..-. .... ...+..+..++
T Consensus 11 ~ie~~g~~iliDP~~~~~~~~~~~~~~D~IlisH~H~DH~~~~~--l~~~-------------------~~~~~vv~~~~ 69 (163)
T PF13483_consen 11 LIETGGKRILIDPWFSSVGYAPPPPKADAILISHSHPDHFDPET--LKRL-------------------DRDIHVVAPGG 69 (163)
T ss_dssp EEEETTEEEEES--TTT--T-TSS-B-SEEEESSSSTTT-CCCC--CCCH-------------------HTSSEEE-TTE
T ss_pred EEEECCEEEEECCCCCccCcccccCCCCEEEECCCccccCChhH--hhhc-------------------ccccEEEccce
Confidence 34557888999999732 357899999999999997421 1111 12457788889
Q ss_pred EEEECCEEEEEEecccC-------CCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCC
Q 004877 469 KTTIAGIDVTCLEANHC-------PGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTY 533 (725)
Q Consensus 469 ~~~Iggv~Vt~~~agH~-------pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy 533 (725)
.+++++++|+.+++.|. ...++|+|+. +|.+|+|.||+....+..... ...++|++++-..-
T Consensus 70 ~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~-~g~~i~~~Gd~~~~~~~~~~~--~~~~vDvl~~p~~g 138 (163)
T PF13483_consen 70 EYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEV-GGVTIYHAGDTGFPPDDEQLK--QLGKVDVLFLPVGG 138 (163)
T ss_dssp EEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEE-TTEEEEE-TT--S---HHHHH--HH-S-SEEEEE--T
T ss_pred EEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEe-CCCEEEEECCCccCCCHHHHh--cccCCCEEEecCCC
Confidence 99999999999999883 2478999997 899999999999754433221 13589999998753
No 41
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.71 E-value=6.4e-09 Score=119.71 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=84.9
Q ss_pred CCccEEEeccCchhhhCChhhh---c----C-----CceEEeCHHHHHHHHHHhCCC------CcceE----EecCCCE-
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRS---F----H-----HGKIYCSLITARLVNMKIGIP------WDRLQ----VLPLNQK- 469 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~---~----~-----~~pIY~s~~T~~ll~~~lg~~------~~~~~----~l~~ge~- 469 (725)
+++.+|||||.|.||.-||+.. | . ..-|.++....++++.....+ +..+. .+....+
T Consensus 500 r~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~ 579 (746)
T KOG2121|consen 500 RKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPD 579 (746)
T ss_pred HhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCcc
Confidence 4679999999999999999832 1 1 133556777777776432110 00000 0110111
Q ss_pred -----------EEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCC
Q 004877 470 -----------TTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNP 536 (725)
Q Consensus 470 -----------~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~ 536 (725)
-+++...|...++-||+-+++..|....|.+|+|+||++.++.++.. ..++|+||+|||+.+.
T Consensus 580 s~~~~~~~~~l~~~~l~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~v~~----g~datlLIHEAT~ED~ 653 (746)
T KOG2121|consen 580 SVPERLLSYLLRELGLESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRPCEDLVKA----GKDATLLIHEATLEDD 653 (746)
T ss_pred ccchhhhhHHHHhcCceeEEecCcEecChhhceeEecccceEEEEcCCCCCchhHhhh----ccCCceEEeehhhchh
Confidence 12367889999999999999999986567789999999999887766 4699999999999874
No 42
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.65 E-value=6.4e-08 Score=101.75 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=74.0
Q ss_pred CceEeCCccc--------c---CCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcceEEecC
Q 004877 401 TPFRVDAFKY--------L---RGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRLQVLPL 466 (725)
Q Consensus 401 ~~~~ID~f~~--------~---~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ 466 (725)
..+.||+... + ...+.+||+||.|.||++|+..+ +...++|+.... +.. ....+..
T Consensus 37 ~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~--------~~~--~d~~l~~ 106 (251)
T PLN02962 37 PALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKAS--------GSK--ADLFVEP 106 (251)
T ss_pred EEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEecccc--------CCC--CCEEeCC
Confidence 4567888631 1 12678999999999999999854 335788886431 111 1234778
Q ss_pred CCEEEECCEEEEEEec-ccCCCCeEEEEecc---CCeEEEEecccCCChh
Q 004877 467 NQKTTIAGIDVTCLEA-NHCPGSIIILFEPQ---NGKAVLHTGDFRFSEE 512 (725)
Q Consensus 467 ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~---~Gk~IlYTGD~~~~~~ 512 (725)
++.+.++++.++++.+ ||++|+++|++... ....++||||+-+...
T Consensus 107 g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g 156 (251)
T PLN02962 107 GDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRG 156 (251)
T ss_pred CCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCC
Confidence 8999999999998888 99999999988521 1235999999977643
No 43
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.60 E-value=8.8e-08 Score=101.43 Aligned_cols=152 Identities=23% Similarity=0.192 Sum_probs=91.1
Q ss_pred CccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHH---hCCCCcceEEecCCCEEEECCEEEEEEecccC---
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMK---IGIPWDRLQVLPLNQKTTIAGIDVTCLEANHC--- 485 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~---lg~~~~~~~~l~~ge~~~Iggv~Vt~~~agH~--- 485 (725)
.+++||+||.|+||+.|++.+. ...++|+...+....... -+.+.....++...+...+++..+++++..|-
T Consensus 62 ~idai~~TH~H~DHi~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hd~~~ 141 (269)
T COG1235 62 DLDAILLTHEHSDHIQGLDDLRRAYTLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAIGGLEVTPFPVPHDAIE 141 (269)
T ss_pred ccCeEEEecccHHhhcChHHHHHHhcCCcccccceecccchhhhhccchhhhcCCCCccccccccceeeecCCCCCcccc
Confidence 6999999999999999999532 235666666554433321 01111112233344555666677776666661
Q ss_pred ---------------CCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCCCCCCHHHHHHHH
Q 004877 486 ---------------PGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFV 550 (725)
Q Consensus 486 ---------------pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l 550 (725)
....+|.++. .++.|+|++|+...+.....-.......++++.+.++..+ ..+++ +...+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~-gh~~~-h~~~~~a 218 (269)
T COG1235 142 PVGFVIIRTGRKLHGGTDIGYGLEW-RIGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDP-GHLSN-HLSAEEA 218 (269)
T ss_pred CCCcccccCcccccccccceeeeee-eeccEEEccccccCcchhHHHHhcCCccceeeeecccccc-CCCCC-chhHHHH
Confidence 2244556553 3356889999997766544322235678999999999775 33344 4446677
Q ss_pred HHHHHHhhcCCCcEEEEeccc
Q 004877 551 IEAIQAESFNPKTLFLIGSYT 571 (725)
Q Consensus 551 ~e~I~~~~~~~~~~vlIp~~s 571 (725)
.++++. ..++.++ +...+
T Consensus 219 ~~~~~~--~~~~riv-LtHls 236 (269)
T COG1235 219 LELIEK--LKPKRLV-LTHLS 236 (269)
T ss_pred HHHHHh--CCcceEE-EEecC
Confidence 777763 3444344 44344
No 44
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=98.57 E-value=4.1e-08 Score=104.94 Aligned_cols=67 Identities=28% Similarity=0.407 Sum_probs=61.6
Q ss_pred CCcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 232 VDVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
.-...|++||+.|||++|.+.|.++|+ +++.+..++++||.+|||..++||||||.+|+.++..-..
T Consensus 213 ~~~~~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e~d~~ 280 (361)
T KOG4384|consen 213 PHPKSLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKEIDSG 280 (361)
T ss_pred CCchHHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc
Confidence 345679999999999999999999999 6999999999999999999999999999999999866543
No 45
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.55 E-value=1.9e-07 Score=94.72 Aligned_cols=96 Identities=29% Similarity=0.472 Sum_probs=67.3
Q ss_pred CccEEEeccCchhhhCChhhhcC---CceEEeCHHHHHHHHHHh---------C--CC-CcceEEecCCCEEEECCEEEE
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSFH---HGKIYCSLITARLVNMKI---------G--IP-WDRLQVLPLNQKTTIAGIDVT 478 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~~---~~pIY~s~~T~~ll~~~l---------g--~~-~~~~~~l~~ge~~~Iggv~Vt 478 (725)
+|++|++||.|.||++|+..... ..++|............. . .+ ......+..++.+.+++..++
T Consensus 62 ~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (252)
T COG0491 62 DVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELE 141 (252)
T ss_pred ChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhhcccccccccccccCCCCccccceecCCCCEEEecCeEEE
Confidence 68999999999999999985321 256766655544433211 0 01 112334557788899886677
Q ss_pred EEec-ccCCCCeEEEEeccCCeEEEEecccCCChh
Q 004877 479 CLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFSEE 512 (725)
Q Consensus 479 ~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~~~ 512 (725)
.+++ ||++|+++|+++. ++ ++|+||.-+...
T Consensus 142 ~i~tpGHT~g~~~~~~~~-~~--~l~~gD~~~~~~ 173 (252)
T COG0491 142 VLHTPGHTPGHIVFLLED-GG--VLFTGDTLFAGD 173 (252)
T ss_pred EEECCCCCCCeEEEEECC-cc--EEEecceeccCC
Confidence 7766 9999999999985 33 999999987654
No 46
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.50 E-value=2e-06 Score=90.41 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=96.1
Q ss_pred CCcccCCCCceEeCCcccc---------------CCCccEEEeccCchhhhCChh--hhc-CCceEEeCHHHHHHHHHHh
Q 004877 393 PTWCCVPGTPFRVDAFKYL---------------RGDCSHWFLTHFHMDHYQGLT--RSF-HHGKIYCSLITARLVNMKI 454 (725)
Q Consensus 393 p~~~~ipg~~~~ID~f~~~---------------~~~idaIfLTHaH~DHigGLp--~~~-~~~pIY~s~~T~~ll~~~l 454 (725)
.++....+..+.||++-.. ...+|+|+|||.|.||+..-. ... ...+++..+.....+....
T Consensus 16 ~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 95 (258)
T COG2220 16 AFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLGAGDLLIRD 95 (258)
T ss_pred EEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHHHHHHHHhc
Confidence 3445566666777777432 135899999999999998544 222 2256666666654444456
Q ss_pred CCCCcceEEecCCCEEEECCEEEEEEecccCC-----C--------CeEEEEeccCCeEEEEecccCCChhhhhhcccCC
Q 004877 455 GIPWDRLQVLPLNQKTTIAGIDVTCLEANHCP-----G--------SIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQT 521 (725)
Q Consensus 455 g~~~~~~~~l~~ge~~~Iggv~Vt~~~agH~p-----G--------S~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~ 521 (725)
+++...+..+..++.+++++++|+++++-|.. + .++|+|+. .|.+++|.||+.+ ...... ...
T Consensus 96 g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~-~g~~iyh~GDt~~-~~~~~~--~~~ 171 (258)
T COG2220 96 GVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIET-PGGRVYHAGDTGY-LFLIIE--ELD 171 (258)
T ss_pred CCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEe-CCceEEeccCccH-HHHhhh--hhc
Confidence 66666788899999999999999998887732 2 57799996 6788999999998 222111 122
Q ss_pred CCccEEEEecCC
Q 004877 522 CPIHTLILDTTY 533 (725)
Q Consensus 522 ~~~DlLIlEaTy 533 (725)
..+|++++..-.
T Consensus 172 ~~~DvallPig~ 183 (258)
T COG2220 172 GPVDVALLPIGG 183 (258)
T ss_pred CCccEEEeccCC
Confidence 348999999874
No 47
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.37 E-value=6.8e-07 Score=93.81 Aligned_cols=89 Identities=25% Similarity=0.316 Sum_probs=67.7
Q ss_pred CCccEEEeccCchhhhCChhhhc---C-CceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEec-ccCCC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF---H-HGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEA-NHCPG 487 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~---~-~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pG 487 (725)
..+.+||.||-|+||+||+..+. . .+.+|.... .+.+. .-..+..++.+.++|.+|+.+.+ ||+.|
T Consensus 50 ~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~------~r~~~---i~~~~~~~e~~~~~g~~v~~l~TPgHT~~ 120 (265)
T KOG0813|consen 50 RRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGAD------DRIPG---ITRGLKDGETVTVGGLEVRCLHTPGHTAG 120 (265)
T ss_pred CceeEEEeccccccccCcHHHHHhhccCCcEEecCCh------hcCcc---ccccCCCCcEEEECCEEEEEEeCCCccCC
Confidence 46899999999999999998432 2 466887741 11110 11237788999999999999999 99999
Q ss_pred CeEEEEeccCCeEEEEecccCCC
Q 004877 488 SIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 488 S~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
++.|++....|.+.+||||+-+.
T Consensus 121 hi~~~~~~~~~e~~iFtGDtlf~ 143 (265)
T KOG0813|consen 121 HICYYVTESTGERAIFTGDTLFG 143 (265)
T ss_pred cEEEEeecCCCCCeEEeCCceee
Confidence 99999983245679999999654
No 48
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=98.27 E-value=4.7e-07 Score=104.49 Aligned_cols=72 Identities=29% Similarity=0.490 Sum_probs=67.4
Q ss_pred CCCCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhccc
Q 004877 228 PQKAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRA 299 (725)
Q Consensus 228 ~~~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~ 299 (725)
....|+...|..||+.++|++|.+.|.++.|-+..|++|..-|||++||+.+||-|+|+.||.+|+.++..+
T Consensus 994 ~~~~w~seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril~aIkdl~~~~~~a 1065 (1099)
T KOG1170|consen 994 NIPYWTSEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRILSAIKDLRAQNQRA 1065 (1099)
T ss_pred cCccccHHHHHHHHhccccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHHHHHHHHHhcchhh
Confidence 347799999999999999999999999999999999999999999999999999999999999998877553
No 49
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.21 E-value=2.2e-06 Score=82.46 Aligned_cols=99 Identities=25% Similarity=0.190 Sum_probs=53.5
Q ss_pred CCccEEEeccCchhhhCChhhhc---CCceEEeCHHHHHHHHHHhC--------CCCcceEEecCCCEEEE-CCEEEEEE
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIG--------IPWDRLQVLPLNQKTTI-AGIDVTCL 480 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~---~~~pIY~s~~T~~ll~~~lg--------~~~~~~~~l~~ge~~~I-ggv~Vt~~ 480 (725)
.+|++||+||.|.||++|++.+. ....+++............. ................+ +...+...
T Consensus 42 ~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (194)
T PF00753_consen 42 EDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFII 121 (194)
T ss_dssp GGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEE
T ss_pred CCeEEEEECcccccccccccccccccceeeeeccccccccccccccccccccccccccccceeeecccccccccccccce
Confidence 47899999999999999999543 22344444444333221110 00011122333344444 34443333
Q ss_pred ecccCCCCeEEEEeccCCeEEEEecccCCChhh
Q 004877 481 EANHCPGSIIILFEPQNGKAVLHTGDFRFSEEM 513 (725)
Q Consensus 481 ~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~ 513 (725)
..|..++..+.+.. .+.+++||||..+....
T Consensus 122 -~~~~~~~~~~~~~~-~~~~vlftGD~~~~~~~ 152 (194)
T PF00753_consen 122 -PGPGHGSDSLIIYL-PGGKVLFTGDLLFSNEH 152 (194)
T ss_dssp -ESSSSSTTEEEEEE-TTTTEEEEETTSCTTTS
T ss_pred -eccccCCcceEEEe-CCCcEEEeeeEeccCCc
Confidence 34444444444443 34459999999886543
No 50
>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]
Probab=98.21 E-value=1.6e-06 Score=89.36 Aligned_cols=65 Identities=35% Similarity=0.500 Sum_probs=61.6
Q ss_pred CCCCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHH
Q 004877 228 PQKAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292 (725)
Q Consensus 228 ~~~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l 292 (725)
+-..|+..+|.+||++|+|.+|.+.|..++||+..|..|+-+|+.++|||.+|||.-|=.|++.|
T Consensus 206 pl~~Wsk~DV~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~~LGVTRVgHRmnIerALr~l 270 (272)
T KOG4375|consen 206 PLQRWSKIDVNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFRGLGVTRVGHRMNIERALRQL 270 (272)
T ss_pred ccceeccccHHHHHHhhhhhhcchhhhhcccccchhhhcchhhhhcccchhhhhHHHHHHHHHHh
Confidence 34679999999999999999999999999999999999999999999999999999999998876
No 51
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.19 E-value=0.00017 Score=80.53 Aligned_cols=278 Identities=15% Similarity=0.163 Sum_probs=158.8
Q ss_pred CccEEEeccCchhhhCChhhhc----CCceEEeCHHHHHHHHHHh----------C------------------C-----
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSF----HHGKIYCSLITARLVNMKI----------G------------------I----- 456 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~----~~~pIY~s~~T~~ll~~~l----------g------------------~----- 456 (725)
-||+|+||..|. +-|||+.- +.++||++++|+++-+..+ . .
T Consensus 96 tiDvILISNy~~--mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk~~ 173 (653)
T KOG1138|consen 96 TIDVILISNYMG--MLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLKKA 173 (653)
T ss_pred ceeEEEEcchhh--hcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCchhh
Confidence 589999999885 78888532 2489999999987543211 0 0
Q ss_pred ----CC-------------cceEEecCCCEEEE-CCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcc
Q 004877 457 ----PW-------------DRLQVLPLNQKTTI-AGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSV 518 (725)
Q Consensus 457 ----~~-------------~~~~~l~~ge~~~I-ggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~ 518 (725)
.| ..++.+.+.+++.+ |-+.|+++..||+.||+-|+|.++.+ ++.|..+..+.....+.-.
T Consensus 174 ~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~ne-k~sYvS~Ss~ltth~r~md 252 (653)
T KOG1138|consen 174 VFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNE-KLSYVSGSSFLTTHPRPMD 252 (653)
T ss_pred ccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCCc-ceEEEecCcccccCCcccc
Confidence 01 12456777888877 56899999999999999999998655 5999988876543222100
Q ss_pred -cCCCCccEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHH-HHHHH------cCCcEE
Q 004877 519 -LQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFL-EVARV------LRKKIY 590 (725)
Q Consensus 519 -l~~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~-eLa~~------l~~~I~ 590 (725)
-..+.+|+||.-.--.-+ -..|. +-..++..-+. .+.+.+|.+++|+|..|--..++ .+... .+.|||
T Consensus 253 ~a~Lk~~Dvli~T~lsql~-tanpd--~m~gelc~nvt-~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~y 328 (653)
T KOG1138|consen 253 QAGLKETDVLIYTGLSQLP-TANPD--EMGGELCKNVT-LTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIY 328 (653)
T ss_pred ccccccccEEEEecccccc-cCCcc--chhhhHHHHHH-HHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcce
Confidence 124688999885532222 11222 22223223232 25667899999999999864333 33332 257999
Q ss_pred EechHH-------HHHHHc-C-------C-Ccccc---cccccC---------------CCCCcEEEEeCCCccchHHHH
Q 004877 591 VNAAKF-------RVLKCL-D-------F-SKEDI---QWFTTN---------------EHESHIHVMPMWTLASFKRLK 636 (725)
Q Consensus 591 V~~~~~-------~I~~~l-g-------~-~~~~~---~~it~~---------------~~e~~v~vvp~~~~~s~~rl~ 636 (725)
+-+..+ .|+..+ . + +++.. .+++.+ =....|+.+..... .|+...
T Consensus 329 fISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~Sl-Rfgdv~ 407 (653)
T KOG1138|consen 329 FISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSL-RFGDVV 407 (653)
T ss_pred EecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHHHhhhcccceeEecCCcch-hhhHHH
Confidence 887654 233221 1 0 11110 112211 12344544433333 355666
Q ss_pred HHHhhhcCCCCcEEEEeecc-ccccCCCCCCcchhhhcCceEEEEeccCCCCCHHHHHHHHHHcCCCEEE
Q 004877 637 HMSNQYAGRFSLIVAFSPTG-WTFSKGKKKSPGRRWQQGTIIRYEVPYSEHCSFTELKEFVKFVSPEHII 705 (725)
Q Consensus 637 ~l~~~~~~~~~~iI~~~~TG-w~~~~g~e~t~gr~~~~G~~~v~~vpyS~HAs~~EL~~fV~~lrPk~VI 705 (725)
|+.+-|.......|.|. -+ +.....- .+ ++.=.......|+=.--+|..|-.+++.++|+.|+
T Consensus 408 h~~e~~g~sp~NsvI~t-dpD~~~~~vl--~P---frpLamK~i~cpidtrlnfqql~kLlkelqPk~vl 471 (653)
T KOG1138|consen 408 HFLECWGLSPKNSVIFT-DPDFSYLLVL--AP---FRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVL 471 (653)
T ss_pred HHHHHhcCCCCCceEEe-CCCCchhhhh--cC---CccccceeEeccccccccHHHHHHHHHHhCCCEEE
Confidence 76665554433323221 11 1100000 00 11111123456777777899999999999999876
No 52
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=98.11 E-value=3.1e-06 Score=65.21 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=31.0
Q ss_pred EEEeccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChH
Q 004877 678 RYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRD 714 (725)
Q Consensus 678 v~~vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~ 714 (725)
+..+.||+|||++||++|++.++|++|| ++||+++
T Consensus 9 v~~~~fSgHad~~~L~~~i~~~~p~~vi--lVHGe~~ 43 (43)
T PF07521_consen 9 VEQIDFSGHADREELLEFIEQLNPRKVI--LVHGEPR 43 (43)
T ss_dssp EEESGCSSS-BHHHHHHHHHHHCSSEEE--EESSEHH
T ss_pred EEEEeecCCCCHHHHHHHHHhcCCCEEE--EecCCCC
Confidence 5678999999999999999999999999 8898753
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.05 E-value=3e-05 Score=80.97 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=81.9
Q ss_pred CccEEEeccCchhhhCChhhh---c---CCceEEeCHHHHHHHHHHhCC------------CCcceEEecCCCEEEE--C
Q 004877 414 DCSHWFLTHFHMDHYQGLTRS---F---HHGKIYCSLITARLVNMKIGI------------PWDRLQVLPLNQKTTI--A 473 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~---~---~~~pIY~s~~T~~ll~~~lg~------------~~~~~~~l~~ge~~~I--g 473 (725)
.|..+||||+|.||+.||--. + ....||+.+.|.+.++...-. ...+++.+++.+...+ -
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~t 191 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTLT 191 (356)
T ss_pred hhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeeee
Confidence 466779999999999998621 1 125799999999999864311 1234667777665544 3
Q ss_pred CEEEEEEecccCC------CCeEEEEecc-CCeEEEEecccCCChhh--------hhh--cccCCCCccEEEEecCCCC
Q 004877 474 GIDVTCLEANHCP------GSIIILFEPQ-NGKAVLHTGDFRFSEEM--------ASM--SVLQTCPIHTLILDTTYCN 535 (725)
Q Consensus 474 gv~Vt~~~agH~p------GS~~flIe~~-~Gk~IlYTGD~~~~~~~--------~~~--~~l~~~~~DlLIlEaTy~~ 535 (725)
.+++.+|++.|-. -|.+|+|... ...-++|.||+..+.-. ++. ..+......-+++||.|.+
T Consensus 192 ~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~P~ 270 (356)
T COG5212 192 RLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSYPN 270 (356)
T ss_pred eecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecCCC
Confidence 5788999999932 2578888752 14568999999865321 111 0011346677899999976
No 54
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.05 E-value=2e-05 Score=86.93 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=92.6
Q ss_pred CCCCcccCCCCceEeCCcccc-------------C-CCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHH
Q 004877 391 DIPTWCCVPGTPFRVDAFKYL-------------R-GDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMK 453 (725)
Q Consensus 391 ~~p~~~~ipg~~~~ID~f~~~-------------~-~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~ 453 (725)
+-..|+...+....||+.... . ..||+|+++|.-.||.++|+.+ .++++|+|+...+++++..
T Consensus 35 tyNSYLI~~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~~ 114 (388)
T COG0426 35 TYNSYLIVGDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLKGF 114 (388)
T ss_pred eeeeEEEeCCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHHHHh
Confidence 466777777778899998541 1 3599999999999999999954 3578999999999999977
Q ss_pred hCCCCcceEEecCCCEEEECCEEEEEEec--ccCCCCeEEEEeccCCeEEEEecccC
Q 004877 454 IGIPWDRLQVLPLNQKTTIAGIDVTCLEA--NHCPGSIIILFEPQNGKAVLHTGDFR 508 (725)
Q Consensus 454 lg~~~~~~~~l~~ge~~~Iggv~Vt~~~a--gH~pGS~~flIe~~~Gk~IlYTGD~~ 508 (725)
+..+.. ++.+..|+.+.+||.+++++++ -|.|+++..+... . +|+||+|..
T Consensus 115 ~~~~~~-~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd~~--~-kILFS~D~f 167 (388)
T COG0426 115 YHDPEW-FKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYDPE--D-KILFSCDAF 167 (388)
T ss_pred cCCccc-eeecCCCCEeccCCcEEEEEeCCCCCCCCceeEeecC--C-cEEEccccc
Confidence 665543 7889999999999999999998 7999987765542 2 499999963
No 55
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.02 E-value=3.8e-05 Score=82.51 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=72.8
Q ss_pred CCccEEEeccCchhhhCChhhhcC---CceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEec-ccC---
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSFH---HGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEA-NHC--- 485 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~~---~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~--- 485 (725)
.+||.+++||.|.||+||+..... -..+|+......-....+............|+.+.++++.++++.- +..
T Consensus 89 ~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~ 168 (293)
T COG2333 89 RKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDD 168 (293)
T ss_pred ccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccchhhhhhcCCceeccccCceEEECCeEEEEEcCCcccccc
Confidence 468999999999999999995443 2345554322211100011111234556678899999999987754 342
Q ss_pred --CCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEE
Q 004877 486 --PGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLIL 529 (725)
Q Consensus 486 --pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIl 529 (725)
-.|+.++++. ++.++++|||.....+.........-++|+|..
T Consensus 169 ~N~~S~Vl~v~~-g~~s~LlTGD~e~~~E~~l~~~~~~l~~dVLkV 213 (293)
T COG2333 169 LNNDSCVLRVTF-GGNSFLLTGDLEEKGEKLLKKYGPDLRADVLKV 213 (293)
T ss_pred ccCcceEEEEEe-CCeeEEEecCCCchhHHHHHhhCCCccceEEEe
Confidence 2488899986 788999999998765422211111235777755
No 56
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=97.99 E-value=8.4e-05 Score=88.52 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=72.9
Q ss_pred CccEEEeccCchhhhCChhhhc---CCceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEeccc------
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEANH------ 484 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~---~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~agH------ 484 (725)
++|++++||.|.||++|+.... ....+|.+.... . .......+..|+.+++++++++++..+.
T Consensus 490 ~ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~~~------~--~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~ 561 (662)
T TIGR00361 490 KLEALILSHADQDHIGGAEIILKHHPVKRLVIPKGFV------E--EGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASK 561 (662)
T ss_pred CcCEEEECCCchhhhCcHHHHHHhCCccEEEeccchh------h--CCCceEecCCCCEEeECCEEEEEECCCCccCCCC
Confidence 3899999999999999999543 335677765421 1 1123456778889999999999885432
Q ss_pred CCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEE
Q 004877 485 CPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLIL 529 (725)
Q Consensus 485 ~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIl 529 (725)
-..|+.++++. ++.++++|||.....+..........++|+|..
T Consensus 562 N~~S~vl~i~~-~~~~~L~tGD~~~~~E~~l~~~~~~l~~dvLk~ 605 (662)
T TIGR00361 562 NNHSCVLWVDD-GGNSWLLTGDLEAEGEQEVMRVFPNIKADVLQV 605 (662)
T ss_pred CCCceEEEEEE-CCeeEEEecCCCHHHHHHHHhcccCcCccEEEe
Confidence 23578888886 788999999998754321111112236777776
No 57
>PRK11539 ComEC family competence protein; Provisional
Probab=97.79 E-value=0.00012 Score=88.31 Aligned_cols=102 Identities=21% Similarity=0.178 Sum_probs=69.0
Q ss_pred CccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEec-ccC----
Q 004877 414 DCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEA-NHC---- 485 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~---- 485 (725)
++|++++||.|.||++|++.. ++...||.+.... ...+...|+.+.+++++++.+.. +|.
T Consensus 551 ~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~~------------~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~ 618 (755)
T PRK11539 551 TPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNWA------------NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAG 618 (755)
T ss_pred CcCEEEeCCCCcccCCCHHHHHHhCCcceeeccCccc------------CcccccCCCeEeECCEEEEEEecCcccCCCC
Confidence 489999999999999999954 3446778754210 11224567888899999988844 443
Q ss_pred -CCCeEEEEeccCCeEEEEecccCCChhh--hhhcccCCCCccEEEE
Q 004877 486 -PGSIIILFEPQNGKAVLHTGDFRFSEEM--ASMSVLQTCPIHTLIL 529 (725)
Q Consensus 486 -pGS~~flIe~~~Gk~IlYTGD~~~~~~~--~~~~~l~~~~~DlLIl 529 (725)
.+|+.++++. ++.++++|||.....+. .... -...++|+|..
T Consensus 619 N~~S~Vl~i~~-~~~~~LltGDi~~~~E~~Ll~~~-~~~l~~dvL~v 663 (755)
T PRK11539 619 NNDSCVIRVDD-GKHSILLTGDLEAQAEQKLLSRY-WQQLAATLLQV 663 (755)
T ss_pred CCccEEEEEEE-CCEEEEEEeCCChHHHHHHHhcC-ccCcCCCEEEe
Confidence 4588899985 78899999998765432 2110 01225677665
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.54 E-value=6.8e-05 Score=83.05 Aligned_cols=69 Identities=28% Similarity=0.380 Sum_probs=63.5
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhc-cCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLI-GIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~-~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
..|...+|.-|++.||+++|++.|.+..+|++.|++||++||+ ++|..+-=||||.+..++.|+...+.
T Consensus 463 PgWt~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv~AdY 532 (832)
T KOG3678|consen 463 PGWTCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAADY 532 (832)
T ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Confidence 4588899999999999999999999999999999999999999 89998888999999999999976543
No 59
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=97.40 E-value=0.00043 Score=72.47 Aligned_cols=54 Identities=22% Similarity=0.126 Sum_probs=40.7
Q ss_pred cccCCCCceEeCCcccc-------------CCCccEEEeccCchhhhCChhhhc----CCceEEeCHHHHH
Q 004877 395 WCCVPGTPFRVDAFKYL-------------RGDCSHWFLTHFHMDHYQGLTRSF----HHGKIYCSLITAR 448 (725)
Q Consensus 395 ~~~ipg~~~~ID~f~~~-------------~~~idaIfLTHaH~DHigGLp~~~----~~~pIY~s~~T~~ 448 (725)
+....+..+.+|+..+. ..++|+++|||.|+||++||+.+. ...+||+++....
T Consensus 26 LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 26 LVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred EEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 34455566778887431 148999999999999999999543 3478999998766
No 60
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.19 E-value=0.0072 Score=63.12 Aligned_cols=172 Identities=12% Similarity=0.101 Sum_probs=93.9
Q ss_pred CccEEEeccCchhhhCChh------------hhcCCceEEeCHHHHHHHHH----------HhCCCCcceEEecCCCEEE
Q 004877 414 DCSHWFLTHFHMDHYQGLT------------RSFHHGKIYCSLITARLVNM----------KIGIPWDRLQVLPLNQKTT 471 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp------------~~~~~~pIY~s~~T~~ll~~----------~lg~~~~~~~~l~~ge~~~ 471 (725)
+.+.|.|||.|.||.--.- ..+.+..+..-.+|..+=.. .++. ...-..+..+.+|+
T Consensus 65 ~a~VitISHYHYDHhtPf~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~-~~~~ie~ADgk~f~ 143 (304)
T COG2248 65 KADVITISHYHYDHHTPFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKD-IAREIEYADGKTFE 143 (304)
T ss_pred hCCEEEEeeeccccCCccccchhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhh-hcceeEecCCceEE
Confidence 3588999999999997522 11222223333333221110 0110 11223466789999
Q ss_pred ECCEEEEEEec-ccCC-CC-----eEEEEeccCCeEEEEecccC-CChhhhhhcccCCCCccEEEEecC--CC-CCCCCC
Q 004877 472 IAGIDVTCLEA-NHCP-GS-----IIILFEPQNGKAVLHTGDFR-FSEEMASMSVLQTCPIHTLILDTT--YC-NPLYDF 540 (725)
Q Consensus 472 Iggv~Vt~~~a-gH~p-GS-----~~flIe~~~Gk~IlYTGD~~-~~~~~~~~~~l~~~~~DlLIlEaT--y~-~~~~~~ 540 (725)
+|+..|.+-+. .|-+ |+ +++.|.. ++.+|+|+.|+. ...+.... .+...++|++|++.- |. .-.+..
T Consensus 144 fG~t~IefS~pvpHG~eGskLGyVl~v~V~d-g~~~i~faSDvqGp~~~~~l~-~i~e~~P~v~ii~GPpty~lg~r~~~ 221 (304)
T COG2248 144 FGGTVIEFSPPVPHGREGSKLGYVLMVAVTD-GKSSIVFASDVQGPINDEALE-FILEKRPDVLIIGGPPTYLLGYRVGP 221 (304)
T ss_pred eCCEEEEecCCCCCCCcccccceEEEEEEec-CCeEEEEcccccCCCccHHHH-HHHhcCCCEEEecCCchhHhhhhcCh
Confidence 99999998765 8844 32 3455553 667899999997 33222111 133468999999874 21 111222
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEeccc---ccHHHHHH---HHHHHcCCcEEEe
Q 004877 541 PKQEAVIQFVIEAIQAESFNPKTLFLIGSYT---IGKERLFL---EVARVLRKKIYVN 592 (725)
Q Consensus 541 p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~s---lGreqll~---eLa~~l~~~I~V~ 592 (725)
.+.+..++.+..++.+ ....++|-... .+..+.+. +.++..|..|...
T Consensus 222 ~~~E~~irNl~~ii~~----~~~~lViDHHllRD~~y~e~l~~l~~~~~~~GV~v~Ta 275 (304)
T COG2248 222 KSLEKGIRNLERIIEE----TNATLVIDHHLLRDKNYREFLEELFERAEKAGVEVATA 275 (304)
T ss_pred HHHHHHHHHHHHHHHh----CcceEEEeehhhcCCCHHHHHHHHHhhHhhcCceeeeH
Confidence 3456667778777764 22344454332 23344443 3344455555443
No 61
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.18 E-value=0.0011 Score=65.59 Aligned_cols=87 Identities=18% Similarity=0.099 Sum_probs=58.4
Q ss_pred CccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEec-ccCCCCeEEE
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEA-NHCPGSIIIL 492 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pGS~~fl 492 (725)
++-.-+-||.|.||+-|-..+..-. +.....+...-|... -.-++.|+.++||++.+....+ ||++|++.|+
T Consensus 57 ~LiYa~NTH~HADHiTGtg~Lkt~~-----pg~kSVis~~SGakA--D~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV 129 (237)
T KOG0814|consen 57 DLIYALNTHVHADHITGTGLLKTLL-----PGCKSVISSASGAKA--DLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYV 129 (237)
T ss_pred eeeeeecceeecccccccchHHHhc-----ccHHHHhhhcccccc--ccccCCCCEEEEccEEEEEecCCCCCCceEEEE
Confidence 3456688999999999876322110 111222222222221 2347889999999999988877 9999999998
Q ss_pred EeccCCeEEEEecccCCC
Q 004877 493 FEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 493 Ie~~~Gk~IlYTGD~~~~ 510 (725)
+.. + +.+||||.-..
T Consensus 130 ~~d--~-~~aFTGDalLI 144 (237)
T KOG0814|consen 130 EHD--L-RMAFTGDALLI 144 (237)
T ss_pred ecC--c-ceeeecceeEE
Confidence 863 3 48999998543
No 62
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=96.63 E-value=0.0017 Score=53.06 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=48.7
Q ss_pred HHHHHHHCC--ChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHH
Q 004877 237 VVEFLHSLG--LARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 237 v~~wL~~lg--L~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~ 294 (725)
|+.||..|| +.+|.+.|.. +++.|+.++..+|+++||+ +-+||-||......|.
T Consensus 1 V~tFL~~IGR~~~~~~~kf~~---~w~~lf~~~s~~LK~~GIp-~r~RryiL~~~ek~r~ 56 (57)
T PF09597_consen 1 VETFLKLIGRGCEEHAEKFES---DWEKLFTTSSKQLKELGIP-VRQRRYILRWREKYRQ 56 (57)
T ss_pred CHHHHHHHcccHHHHHHHHHH---HHHHHHhcCHHHHHHCCCC-HHHHHHHHHHHHHHhC
Confidence 678999998 9999999954 6899999999999999997 9999999998888764
No 63
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=96.48 E-value=0.017 Score=60.29 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=83.3
Q ss_pred CCccEEEeccCchhhhCChhh-hcC--CceEE-eCHHHHHHHHHHhCCCCcceEEecCCCEEEE--C--CEEEEEEeccc
Q 004877 413 GDCSHWFLTHFHMDHYQGLTR-SFH--HGKIY-CSLITARLVNMKIGIPWDRLQVLPLNQKTTI--A--GIDVTCLEANH 484 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~-~~~--~~pIY-~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~I--g--gv~Vt~~~agH 484 (725)
.+++-++++|.|.||...-.. .+. ..+++ .+......+. +..-..+..+..+++.++ + -++|.+.|+.|
T Consensus 131 p~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m~---~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqH 207 (343)
T KOG3798|consen 131 PDLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWME---GDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQH 207 (343)
T ss_pred CCCceeccccccccccchHHHHhhhccCccceeehhhhhheec---CCCCCceeEeeccchhceecCCcEEEEEEcchhh
Confidence 467778999999999875442 121 22332 3322222221 111112233333333333 2 26778888888
Q ss_pred CCC----------CeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecC-CCCC---CCCCCCHHHHHHHH
Q 004877 485 CPG----------SIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTT-YCNP---LYDFPKQEAVIQFV 550 (725)
Q Consensus 485 ~pG----------S~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaT-y~~~---~~~~p~~~e~~~~l 550 (725)
.-+ -.+|.+-+ .+.+++|.||+++++.....---+...+|+..+-+. |..+ .+.|-+.+++++-.
T Consensus 208 w~~R~L~D~Nk~LW~sw~v~g-~~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGaYePrWfmK~~HInPeEav~Ih 286 (343)
T KOG3798|consen 208 WGQRGLFDRNKRLWSSWAVIG-ENNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGAYEPRWFMKSQHINPEEAVEIH 286 (343)
T ss_pred hcccccccCCcceeeeeEEec-CCceEEecCCCCcccHHHHHHHHhcCCcceeeccccccCchhhcccccCCHHHHHHHH
Confidence 432 12345544 455899999999998644321112345888877766 4432 23454555555443
Q ss_pred HHHHHHhhcCCCcEEEEecccccHH
Q 004877 551 IEAIQAESFNPKTLFLIGSYTIGKE 575 (725)
Q Consensus 551 ~e~I~~~~~~~~~~vlIp~~slGre 575 (725)
.+ +++ +..--|..++|.+|.|
T Consensus 287 kd-v~a---rns~gIHWGTf~l~~E 307 (343)
T KOG3798|consen 287 KD-VRA---KNSIGIHWGTFHLGSE 307 (343)
T ss_pred HH-Hhh---hcceeEeeeeeecccc
Confidence 33 321 3334467789988775
No 64
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.20 E-value=0.0029 Score=72.31 Aligned_cols=69 Identities=23% Similarity=0.424 Sum_probs=62.7
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
..|++.=|-.||..|||.||.+.|.++.||+..|.-||-+||.+|-|.+.=|---|-.+|+-||...=.
T Consensus 621 ~klDv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvnDll~lkVvs~lHhaSlkraIqvLr~n~fn 689 (861)
T KOG1899|consen 621 NKLDVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVNDLLELKVVSALHHASLKRAIQVLRKNDFN 689 (861)
T ss_pred cchhHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 346777799999999999999999999999999999999999999999999999999999999876533
No 65
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=95.36 E-value=0.023 Score=56.91 Aligned_cols=100 Identities=24% Similarity=0.259 Sum_probs=59.0
Q ss_pred cCCCCceEeCCccccC---------CCccEEEeccCchhhhCChhhh--cCCceEEeCHHHHHHHHHHhCCCCcceEEec
Q 004877 397 CVPGTPFRVDAFKYLR---------GDCSHWFLTHFHMDHYQGLTRS--FHHGKIYCSLITARLVNMKIGIPWDRLQVLP 465 (725)
Q Consensus 397 ~ipg~~~~ID~f~~~~---------~~idaIfLTHaH~DHigGLp~~--~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~ 465 (725)
..|+..+.||+..+.. ..+++|+||| .||+...... -...+||++...++. ++ ...-+.+.
T Consensus 29 ~~p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn--~dHvR~A~~ya~~~~a~i~~p~~d~~~----~p--~~~D~~l~ 100 (199)
T PF14597_consen 29 RRPEGNILIDPPPLSAHDWKHLDALGGVAWIVLTN--RDHVRAAEDYAEQTGAKIYGPAADAAQ----FP--LACDRWLA 100 (199)
T ss_dssp --TT--EEES-----HHHHHHHHHTT--SEEE-SS--GGG-TTHHHHHHHS--EEEEEGGGCCC-----S--S--SEEE-
T ss_pred EcCCCCEEecCccccHHHHHHHHhcCCceEEEEeC--ChhHhHHHHHHHHhCCeeeccHHHHhh----CC--CCCccccc
Confidence 4577779999987743 4789999996 6999887632 234799999877532 22 22234566
Q ss_pred CCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCC
Q 004877 466 LNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRF 509 (725)
Q Consensus 466 ~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~ 509 (725)
.|+ ..++|++|..++-.|+||.+.++++. + +++|||.-.
T Consensus 101 dge-~i~~g~~vi~l~G~ktpGE~ALlled--~--vLi~GDl~~ 139 (199)
T PF14597_consen 101 DGE-EIVPGLWVIHLPGSKTPGELALLLED--R--VLITGDLLR 139 (199)
T ss_dssp TT--BSSTTEEEEEE-SSSSTTEEEEEETT--T--EEEESSSEE
T ss_pred cCC-CccCceEEEEcCCCCCCceeEEEecc--c--eEEecceee
Confidence 666 33588999888866999999999984 3 899999643
No 66
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.77 E-value=0.02 Score=65.74 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=57.2
Q ss_pred CCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhc-cCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 232 VDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLI-GIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~-~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
|....|++||..+||++|.+...+.=-.+..|+..+.+|+. +|||.-+=|||||+-|++.+......
T Consensus 550 W~~EqvcnWlae~Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeLnIKhplHRKkl~lal~ai~~keee 617 (861)
T KOG1899|consen 550 WRSEQVCNWLAEIGLGQYMNEVRRWVRSGRTFLTASPQDYEKELNIKHPLHRKKLALALRAIEEKEEE 617 (861)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHHHHhcCchhhcCCHHHHHHHhccCCchHHHHHHHHHHHhcccccc
Confidence 66678999999999999997665544488999999999986 99999999999999999999765443
No 67
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=93.53 E-value=0.046 Score=63.35 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=62.4
Q ss_pred CCCCcccHHHHHHHCC--ChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhh
Q 004877 230 KAVDVSPVVEFLHSLG--LARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lg--L~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
..|...-|++|++.++ |.+|.-.|.++.+.+..++.++.++|..||+..+||+..|+.|+..|..-.
T Consensus 5 ~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~lg~rrig~qeli~~av~~L~~l~ 73 (638)
T KOG1738|consen 5 ETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLETLGVRRIGHQELILEAVEQLWALK 73 (638)
T ss_pred cccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4578888999999998 999999999999999999999999999999999999999999998887654
No 68
>KOG3791 consensus Predicted RNA-binding protein involved in translational regulation [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=91.62 E-value=0.084 Score=60.87 Aligned_cols=55 Identities=35% Similarity=0.569 Sum_probs=50.5
Q ss_pred cccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHH
Q 004877 234 VSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLC 290 (725)
Q Consensus 234 ~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~ 290 (725)
...+.+||++++|.+|.+.|.. .+|++++.|++++|...||.++|.|+++|++-.
T Consensus 475 ~~~ip~WLkslrlhKyt~~~~~--t~~~e~l~ls~~~l~~~Gv~a~g~~~~~L~~~~ 529 (569)
T KOG3791|consen 475 RIEIPEWLKSLRLHKYTNALKS--TTWFELLILSDMKLQHVGVLALGARRKLLKAFS 529 (569)
T ss_pred cccchHHHHhccchhhhccccC--ccHHHhhccchhhcccchhhhhhHHHhhhcccc
Confidence 3557799999999999999988 999999999999999999999999999997654
No 69
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=90.11 E-value=0.12 Score=53.07 Aligned_cols=61 Identities=31% Similarity=0.433 Sum_probs=54.0
Q ss_pred ccHHHHHHH-CCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHh
Q 004877 235 SPVVEFLHS-LGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 235 ~~v~~wL~~-lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
++...+|.. ++|+.|...|..+.+++.+|..+++++|+.||+..+|.+++++.++...-..
T Consensus 118 pd~~~~~~~~~~l~s~~~~~~~~~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~evd~~~ 179 (216)
T KOG4374|consen 118 PDIQSLLTSRLGLESYIKEFNLQEIDLQTFGTLTEGVLMELGILGLGAYWKMFEAIEVDMDN 179 (216)
T ss_pred CchhhHHHHhhcccccchhhhcchHhhhhcccccchHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345666766 9999999999999999999999999999999999999999999998776433
No 70
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.09 E-value=0.72 Score=52.46 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=39.7
Q ss_pred CCCCcccCCCCc--eEeCCcccc---------------CCCccEEEeccCchhhhCChhhhc-------CCceEEeCHHH
Q 004877 391 DIPTWCCVPGTP--FRVDAFKYL---------------RGDCSHWFLTHFHMDHYQGLTRSF-------HHGKIYCSLIT 446 (725)
Q Consensus 391 ~~p~~~~ipg~~--~~ID~f~~~---------------~~~idaIfLTHaH~DHigGLp~~~-------~~~pIY~s~~T 446 (725)
++..-..+.|.. |+||+.... .+.|.+|+.||+|.||+||.-... +.++|.++..-
T Consensus 124 DisNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GF 203 (655)
T COG2015 124 DISNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGF 203 (655)
T ss_pred cccceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchhH
Confidence 344444555544 688987331 246899999999999999987322 34788888765
Q ss_pred HH
Q 004877 447 AR 448 (725)
Q Consensus 447 ~~ 448 (725)
.+
T Consensus 204 me 205 (655)
T COG2015 204 ME 205 (655)
T ss_pred HH
Confidence 44
No 71
>KOG3930 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.08 E-value=0.56 Score=50.40 Aligned_cols=61 Identities=31% Similarity=0.515 Sum_probs=52.8
Q ss_pred HHHHHCCC-----hhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhccc
Q 004877 239 EFLHSLGL-----ARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRA 299 (725)
Q Consensus 239 ~wL~~lgL-----~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~ 299 (725)
+|+..-|. ..|.-.|+.|.|.-+.|+.|+-+=|.+|||+.+|+.--||.-++..+.+....
T Consensus 6 qFF~~AGIPs~~A~~YA~~Fv~NRIqk~MLldLnKe~l~ElGvT~iGDiiaILrh~K~v~~q~~re 71 (389)
T KOG3930|consen 6 QFFVRAGIPSEIAKKYAKSFVTNRIQKEMLLDLNKETLSELGVTAIGDIIAILRHIKAVKSQIERE 71 (389)
T ss_pred HHHHHcCCCchHHhhHHHHHHhhhhhHHHHhhhhHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHh
Confidence 34445553 47999999999999999999999999999999999999999999998887554
No 72
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=78.46 E-value=1.1 Score=50.10 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=49.4
Q ss_pred CCCCCCcccHHHHH-HHCCChhhHHHHhhcCCCHHHHhcCChhhh----ccCCCCCCChhHHHH
Q 004877 228 PQKAVDVSPVVEFL-HSLGLARYEEAFVREEIDWDTLQWLTEEDL----IGIGVTALGPRKKIL 286 (725)
Q Consensus 228 ~~~~~~~~~v~~wL-~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL----~~lGI~~~G~RkkIl 286 (725)
+...|+...+.+|| ....|++|.+.|..+.+++.+|..+--..+ +.|||...-||.||-
T Consensus 131 ev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~~f~~~~Lgikd~~hrQKlq 194 (575)
T KOG4403|consen 131 EVHNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNSDFLGKVLGIKDRSHRQKLQ 194 (575)
T ss_pred hhhcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCchHHhhhhhccCchHHHHhhh
Confidence 44778888999999 678999999999999999999987654443 378999999999964
No 73
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.35 E-value=3.7 Score=35.65 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=48.3
Q ss_pred HHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccC----CCC-CCChhHHHHHHHHHHHH
Q 004877 237 VVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGI----GVT-ALGPRKKILHTLCEIKK 294 (725)
Q Consensus 237 v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~l----GI~-~~G~RkkIl~aI~~l~~ 294 (725)
+...|..-.|-+|.+.|...|- |.+.|+.+.++|+.+| |.. .+=|-+|+.+|+.+...
T Consensus 12 ly~vLqrAnLl~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrRlqKAL~ew~~ 75 (82)
T PF04904_consen 12 LYRVLQRANLLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWST 75 (82)
T ss_pred HHHHHHHhhHHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHHHHHHHHHHhc
Confidence 3456788999999999999998 9999999999998765 654 57788888888888764
No 74
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.11 E-value=9.7 Score=41.19 Aligned_cols=106 Identities=18% Similarity=0.052 Sum_probs=60.3
Q ss_pred CCCceEeCCccc-------cCCCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEE
Q 004877 399 PGTPFRVDAFKY-------LRGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTT 471 (725)
Q Consensus 399 pg~~~~ID~f~~-------~~~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~ 471 (725)
.+..+++|.+-. ...+|+.+.+||.|.+|++++.. |...|++. .-+... +.. ..-..++.+...+
T Consensus 103 ~~~v~v~~~gls~lak~~vt~d~i~~vv~t~~~~~hlgn~~~-f~~sp~l~-----~s~e~~-gr~-~~pt~l~e~~~~~ 174 (302)
T KOG4736|consen 103 GGDVVVVDTGLSVLAKEGVTLDQIDSVVITHKSPGHLGNNNL-FPQSPILY-----HSMEYI-GRH-VTPTELDERPYLK 174 (302)
T ss_pred CCceEEEecCCchhhhcCcChhhcceeEEeccCccccccccc-ccCCHHHh-----hhhhhc-CCc-cChhhhccCCccc
Confidence 345567777633 12579999999999999998763 22222211 111111 110 0112344555566
Q ss_pred ECCEEEEEEecccCCCCeEEEEecc-CCeEEEEecccCCChh
Q 004877 472 IAGIDVTCLEANHCPGSIIILFEPQ-NGKAVLHTGDFRFSEE 512 (725)
Q Consensus 472 Iggv~Vt~~~agH~pGS~~flIe~~-~Gk~IlYTGD~~~~~~ 512 (725)
+++.-.-.-..||+.-+...++... ...+++|+||.-....
T Consensus 175 l~~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf~~~~ 216 (302)
T KOG4736|consen 175 LSPNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLFPREE 216 (302)
T ss_pred cCCceeEeeCCCCCCcceEEEEEeecccceEEEEeecccCCc
Confidence 6532222234499887777777643 2357999999875543
No 75
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=72.56 E-value=5 Score=38.44 Aligned_cols=61 Identities=16% Similarity=0.327 Sum_probs=49.1
Q ss_pred CCcccHHHHHHHCCChh-hHHHHhhcCCCHHHHhcCChhhhccC----CCCCCChhHHHHHHHHHHH
Q 004877 232 VDVSPVVEFLHSLGLAR-YEEAFVREEIDWDTLQWLTEEDLIGI----GVTALGPRKKILHTLCEIK 293 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~-Y~~~F~~~~id~~~l~~Lt~~DL~~l----GI~~~G~RkkIl~aI~~l~ 293 (725)
...+.+.+||.-.||.. ..+..-....++++|+.|++.+|++| |.. -...+|+..|.+-||
T Consensus 64 ~~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~~g~~-~EE~rRL~~Al~~LR 129 (129)
T PF13543_consen 64 NSYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILNRCGAR-EEECRRLCRALSNLR 129 (129)
T ss_pred ccCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHHhCCC-HHHHHHHHHHHHhcC
Confidence 45578999999999765 44555456669999999999998876 777 888899999887664
No 76
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=63.59 E-value=4.1 Score=28.14 Aligned_cols=23 Identities=39% Similarity=0.953 Sum_probs=16.9
Q ss_pred cccCCccCCCCCCcHHHHHhhccccc
Q 004877 170 VRCPLCGIDISDLNEELRQAHTNNCL 195 (725)
Q Consensus 170 ~~cp~c~~~~~~l~~~~r~~h~~~cl 195 (725)
|.||+|+..+ ++.+=..|...||
T Consensus 2 v~CPiC~~~v---~~~~in~HLD~CL 24 (26)
T smart00734 2 VQCPVCFREV---PENLINSHLDSCL 24 (26)
T ss_pred CcCCCCcCcc---cHHHHHHHHHHhc
Confidence 6899998887 5556666766765
No 77
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=61.57 E-value=2.9 Score=49.66 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=52.1
Q ss_pred HHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhc-cCCCCCCChhHHHHHHHHHHHHhh
Q 004877 239 EFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLI-GIGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 239 ~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~-~lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
+||.+|||.||..-|++-=+|...|-+|+-.||+ .|++...=||--|...|--||.-+
T Consensus 680 eWLPslGLpQYrsyFme~LvDARMLdhLsKkdLr~~LkmvdsFHr~Sl~yGImcLkrln 738 (916)
T KOG0249|consen 680 EWLPSLGLPQYRSYFMECLVDARMLDHLSKKDLRGHLKMVDSFHRTSLQYGIMCLKRLN 738 (916)
T ss_pred ccccccCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 8999999999999999998999999999999998 789888889988888887776554
No 78
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=60.44 E-value=13 Score=34.23 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcchhh
Q 004877 617 HESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRW 671 (725)
Q Consensus 617 ~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr~~ 671 (725)
....|++++.+++. +++..++..++..+....|.| +||. .++|+|+++
T Consensus 79 ~~p~Vvias~gml~-~G~s~~~l~~~~~d~~n~Ii~--~gy~----~~~T~g~~l 126 (126)
T PF10996_consen 79 SGPKVVIASSGMLE-GGRSRHYLKRLASDPRNTIIF--TGYQ----APGTLGRRL 126 (126)
T ss_dssp CSSEEEEESSTTSS-SSHHHHHHHHHTTSTTSEEEE--SSS------TTSHHHHH
T ss_pred CCCeEEEeCCCCCC-CCHHHHHHHHHcCCCCCeEEE--ecCC----CCCCccccC
Confidence 36789999888875 467788888888877776654 7875 468888763
No 79
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=57.85 E-value=10 Score=45.33 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=61.0
Q ss_pred CCCCcccHHHHHH-HCCCh-hhHHHHhhcCCCHHHHhcCChhhhc-cCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 230 KAVDVSPVVEFLH-SLGLA-RYEEAFVREEIDWDTLQWLTEEDLI-GIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 230 ~~~~~~~v~~wL~-~lgL~-~Y~~~F~~~~id~~~l~~Lt~~DL~-~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
..|..++|..||+ -+||. .|...+..|=-.+..+..|++..+. ++||...=||+|+-.||++++.....
T Consensus 586 ~~w~~p~vvawlel~vgmpa~yva~c~~nVksg~im~~lsd~eiq~~igisnplhrlklrLaiqe~~sltsp 657 (916)
T KOG0249|consen 586 AQWDGPTVVAWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSP 657 (916)
T ss_pred hhcCCCeeeehhhHHhccHHHHHHHHHHHhhhhHHHHhhhhHHHHhhhcccchhhhhhhHHHHHHHHHhcCC
Confidence 4588899999996 46988 8999998887799999999999987 99999999999999999999976654
No 80
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=56.09 E-value=13 Score=42.63 Aligned_cols=61 Identities=26% Similarity=0.318 Sum_probs=53.8
Q ss_pred CcccHHHHHHHCC--ChhhHHHHhhcCCCHHHHhcCChhhhc-cCCCCCCChhHHHHHHHHHHH
Q 004877 233 DVSPVVEFLHSLG--LARYEEAFVREEIDWDTLQWLTEEDLI-GIGVTALGPRKKILHTLCEIK 293 (725)
Q Consensus 233 ~~~~v~~wL~~lg--L~~Y~~~F~~~~id~~~l~~Lt~~DL~-~lGI~~~G~RkkIl~aI~~l~ 293 (725)
+.+.+.+||-.|. |+.|.-....+|++-..|..+|++-|. .-||+..=||-||+.|....+
T Consensus 536 DeSNLdn~L~gLsPels~YTY~mlt~GvnRSLLssltde~m~naCGI~~~iHR~kl~qA~eta~ 599 (832)
T KOG3678|consen 536 DESNLDNFLMGLSPELSVYTYQMLTNGVNRSLLSSLTDEMMQNACGITNPIHRLKLTQAFETAK 599 (832)
T ss_pred chhhHHHHHhcCChhHHHHhHHHhhccccHHHHHHhhHHHHHHhcCccchHHHHHHHHHHHhhc
Confidence 4567889999887 999999999999999999999999977 459999999999999887654
No 81
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=54.55 E-value=5.9 Score=34.17 Aligned_cols=46 Identities=28% Similarity=0.237 Sum_probs=34.8
Q ss_pred CCCCcccHHHHH-HHCCCh---hhHHHHhhcCCCHHHHhcCChhhhccCC
Q 004877 230 KAVDVSPVVEFL-HSLGLA---RYEEAFVREEIDWDTLQWLTEEDLIGIG 275 (725)
Q Consensus 230 ~~~~~~~v~~wL-~~lgL~---~Y~~~F~~~~id~~~l~~Lt~~DL~~lG 275 (725)
..|+..+|..|+ ..|++. .++..|++|+|+++.|..||-+|=|++=
T Consensus 4 ~~Wsv~eVv~WC~~~L~l~~~d~l~~~l~en~I~Gd~L~eLtl~DCKeLc 53 (75)
T PF09235_consen 4 SNWSVDEVVSWCISSLELDDEDPLCNNLRENDITGDVLPELTLEDCKELC 53 (75)
T ss_dssp TT--HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHHHHHHHHCT
T ss_pred ccccHHHHHHHHHHhcCCCCCCHHHHHHHHccCccchhhhccHHHHHHHc
Confidence 458889999999 566765 4777899999999999999999999983
No 82
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=49.32 E-value=5.3 Score=32.10 Aligned_cols=12 Identities=42% Similarity=1.085 Sum_probs=6.4
Q ss_pred ccCCccCCCCCC
Q 004877 171 RCPLCGIDISDL 182 (725)
Q Consensus 171 ~cp~c~~~~~~l 182 (725)
.||||+++|+.=
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999887654
No 83
>KOG3835 consensus Transcriptional corepressor NAB1 [Transcription]
Probab=43.37 E-value=27 Score=39.00 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=48.5
Q ss_pred HHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccC----CC-CCCChhHHHHHHHHHHHH
Q 004877 237 VVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGI----GV-TALGPRKKILHTLCEIKK 294 (725)
Q Consensus 237 v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~l----GI-~~~G~RkkIl~aI~~l~~ 294 (725)
+...|..-+|-+|.+.|+..|- |..+|+.+-+++..+| |+ +.+=|-+|+.+|++++-.
T Consensus 14 LyrVLqkANLlsYyd~FIqQGGDDvqQlceagEeEFLEIMaLVGMa~KPLHVRRlQkALrew~t 77 (495)
T KOG3835|consen 14 LYRVLQKANLLSYYDVFIQQGGDDVQQLCEAGEEEFLEIMALVGMAPKPLHVRRLQKALREWST 77 (495)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchHHHHHHHhhHHHHHHHHHHhccCCcchhHHHHHHHHHHHhc
Confidence 3455788899999999999988 9999999999997765 64 467899999999988853
No 84
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=38.61 E-value=46 Score=30.12 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=46.1
Q ss_pred CCCCcccHHHHH----HHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhh
Q 004877 230 KAVDVSPVVEFL----HSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 230 ~~~~~~~v~~wL----~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
..|+...|..|| +.-+|.. .+.-.-.+++|.+|+.|+.+|+.++.-...| .-++.-+.-||+..
T Consensus 18 ~~Wt~~hV~~WL~Wa~~ef~L~~-vd~~~F~~m~Gk~LC~LskedF~~~~p~~~g--diLw~HL~~Lr~~~ 85 (91)
T cd08541 18 TLWTQEHVRQWLEWAIKEYGLME-IDTSFFQNMDGKELCKMNKEDFLRATSLYNT--EVLLSHLSYLRESS 85 (91)
T ss_pred hhcCHHHHHHHHHHHHHHcCCCC-CChhhccCCCHHHHHhCCHHHHHHHcCCCcc--HHHHHHHHHHHhCc
Confidence 568899999999 4556652 3332334789999999999999887555455 56778888887744
No 85
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=37.55 E-value=34 Score=28.84 Aligned_cols=38 Identities=29% Similarity=0.293 Sum_probs=29.5
Q ss_pred HHHHCCChhhHHHH-hhcCC-CHHHHhcCChhhhccC-CCC
Q 004877 240 FLHSLGLARYEEAF-VREEI-DWDTLQWLTEEDLIGI-GVT 277 (725)
Q Consensus 240 wL~~lgL~~Y~~~F-~~~~i-d~~~l~~Lt~~DL~~l-GI~ 277 (725)
-++.++|+-..-.+ .+.+| +...|+.++.+||..+ |+.
T Consensus 13 ~I~~L~LS~Ra~n~L~~~~I~tv~dL~~~s~~~L~~i~n~G 53 (66)
T PF03118_consen 13 PIEDLGLSVRAYNCLKRAGIHTVGDLVKYSEEDLLKIKNFG 53 (66)
T ss_dssp BGGGSTSBHHHHHHHHCTT--BHHHHHCS-HHHHHTSTTSH
T ss_pred cHHHhCCCHHHHHHHHHhCCcCHHHHHhCCHHHHHhCCCCC
Confidence 34778888887766 88899 9999999999999877 554
No 86
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=34.83 E-value=10 Score=45.64 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=54.5
Q ss_pred CCcccHHHHHHHCCChhhHHHHhhcCCCHH-HHh---cCChhhhccCCCCCCChhHHHHHHHHHHHHhh
Q 004877 232 VDVSPVVEFLHSLGLARYEEAFVREEIDWD-TLQ---WLTEEDLIGIGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~-~l~---~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
.-..++++|++++|+++|.+....|++++. .++ .+-.+++..+|+-..+||.|++.++..++..-
T Consensus 295 ~~~~t~gq~sd~~~~~~~q~~~~~n~~~gy~~sl~sn~i~~qpps~~g~~~~l~~~ks~~a~ss~p~eg 363 (854)
T KOG0507|consen 295 SPRQTVGQWSDSIGLPQYQPKLSQNGFDGYPHSLGSNVIEYQPPSIIGILRSLHRQKSLQALSSLPKEG 363 (854)
T ss_pred cchhhhhcCcccccccccccccccccccccCccccccchhhCCHHHhccCCCCCcchhhhhhhcccccc
Confidence 345789999999999999999999999665 332 25667899999999999999999999997543
No 87
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=33.36 E-value=24 Score=29.71 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=16.3
Q ss_pred CCccEEEeccCc-hhhhCC
Q 004877 413 GDCSHWFLTHFH-MDHYQG 430 (725)
Q Consensus 413 ~~idaIfLTHaH-~DHigG 430 (725)
.++.+||||+.+ +|++||
T Consensus 45 ~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 45 SKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred cccceEEECCCCcccccCC
Confidence 478999999999 999987
No 88
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.66 E-value=73 Score=38.82 Aligned_cols=67 Identities=18% Similarity=0.368 Sum_probs=53.7
Q ss_pred CCCCcccHHHHHHHCCChhhH-HHHhhcCCCHHH-HhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 230 KAVDVSPVVEFLHSLGLARYE-EAFVREEIDWDT-LQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~-~~F~~~~id~~~-l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
...+...+.+||..++..+.. ..|..+++++.. |--+|-+||+.+|+. .|--=||+.||-+.|....
T Consensus 1148 ~~~~DeeL~qWL~~~~iDe~si~lilne~fT~~d~l~yvtrddL~~l~lr-gGm~criwraIi~~R~~qt 1216 (1226)
T KOG4279|consen 1148 ALSTDEELVQWLRGLEIDERSIALILNEAFTLSDMLYYVTRDDLLSLGLR-GGMSCRIWRAIIEVRERQT 1216 (1226)
T ss_pred cccchHHHHHHHHhcCCchHHHHHHHhccccHHHHHHHhhHhhHhhhccc-CceeehHHHHHHHHHccCC
Confidence 345557788999999987665 555777786665 556999999999999 9999999999999887653
No 89
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=29.56 E-value=24 Score=40.98 Aligned_cols=40 Identities=30% Similarity=0.531 Sum_probs=28.5
Q ss_pred chhhhhhhhHHHHhhhcccCcccCCCCCCcccCCccCCCC
Q 004877 141 EEEEEDAVLDVLLKLCDKNDVNCNKIDESVRCPLCGIDIS 180 (725)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~c~~~~~ 180 (725)
+|.-+.+---..-+||-.+++++-+-+.+|.||+|.+.||
T Consensus 547 ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 547 EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3444444466778889888776655566699999988776
No 90
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=29.25 E-value=19 Score=43.20 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=29.6
Q ss_pred HHhhcCC-CHHHHhcCChhhhccCC-CCCCChhHHHHHHHHHHHHh
Q 004877 252 AFVREEI-DWDTLQWLTEEDLIGIG-VTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 252 ~F~~~~i-d~~~l~~Lt~~DL~~lG-I~~~G~RkkIl~aI~~l~~~ 295 (725)
.|.++-| +...|..|+.+||..+- +. -.--++|+++|..-|..
T Consensus 461 L~e~~lI~~~~Dly~Lt~~~l~~l~~~~-~ks~~nLl~aIe~sK~~ 505 (667)
T COG0272 461 LFEKGLIKDIADLYTLTEEDLLSLEGFG-EKSAENLLNAIEKSKKQ 505 (667)
T ss_pred HHHcCccCCHHHHHhCCHHHHhhccchh-hhHHHHHHHHHHHhccC
Confidence 4455555 99999999999998873 33 23334778888766543
No 91
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=28.92 E-value=74 Score=27.14 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=39.4
Q ss_pred CCCCcccHHHHH----HHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHH
Q 004877 230 KAVDVSPVVEFL----HSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 230 ~~~~~~~v~~wL----~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~ 294 (725)
..|+...|..|| +..+|..- .+..=.++|.+|+.|+.+|+... ++..| .-+...++.||+
T Consensus 4 ~~Wt~~~V~~WL~wa~~ef~L~~i--~~~~F~mnGk~LC~ls~edF~~r-~p~~G--diL~~hL~~L~~ 67 (68)
T cd08535 4 RYWSRDDVLQWLRWAENEFSLPPI--DSNTFEMNGKALCLLTKEDFRYR-SPHSG--DVLYELLQHLLK 67 (68)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCC--ChhccCCCHHHHhcCCHHHHhhh-CCCch--HHHHHHHHHHHh
Confidence 458888999999 34455442 12333679999999999998854 33334 345566666664
No 92
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=28.59 E-value=67 Score=27.95 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=41.7
Q ss_pred CCCCcccHHHHH----HHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHh
Q 004877 230 KAVDVSPVVEFL----HSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 230 ~~~~~~~v~~wL----~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
..|+...|..|| +.-+|.. .+.-.-..++|.+|+.||.+|+.++.-...| .-++..++.||+.
T Consensus 6 ~~Wt~~~V~~WL~Wa~~ef~L~~-i~~~~F~~m~Gk~LC~lt~edF~~~~~~~~G--diL~~hL~~Lr~~ 72 (75)
T cd08531 6 TLWTREHVRQWLEWAVKEYGLQD-VDVSRFQNIDGKELCKMTKEDFLRLTSAYNA--DVLLSHLSYLRES 72 (75)
T ss_pred hhcCHHHHHHHHHHHHHHcCCCC-CChhhccCCChHHHHcCCHHHHHHHcCCCcc--hHHHHHHHHHHhC
Confidence 468889999999 4456643 2222224789999999999999876322223 3455666766653
No 93
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=27.69 E-value=42 Score=25.67 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.7
Q ss_pred CCcccCCccCCCCCCcHHHHHhhcccc
Q 004877 168 ESVRCPLCGIDISDLNEELRQAHTNNC 194 (725)
Q Consensus 168 ~~~~cp~c~~~~~~l~~~~r~~h~~~c 194 (725)
+.+.|+.||+--+-.+++.+.+|..-|
T Consensus 12 ~~~~C~~CgM~Y~~~~~eD~~~H~~yH 38 (41)
T PF13878_consen 12 GATTCPTCGMLYSPGSPEDEKLHKKYH 38 (41)
T ss_pred CCcCCCCCCCEECCCCHHHHHHHHHHH
Confidence 358999999999999988888887654
No 94
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=27.32 E-value=34 Score=28.79 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCCCcccHHHHH----HHCCChhhHHHHhhcCCCHHHHhcCChhhhccC
Q 004877 230 KAVDVSPVVEFL----HSLGLARYEEAFVREEIDWDTLQWLTEEDLIGI 274 (725)
Q Consensus 230 ~~~~~~~v~~wL----~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~l 274 (725)
..|+...|..|| +..+|.. ..+..-.++|.+|+.||.+|+...
T Consensus 3 ~~Wt~~~V~~Wl~w~~~~f~L~~--~~~~~F~m~G~~Lc~ls~edF~~~ 49 (66)
T cd08203 3 RLWTKEHVLQWLEWAVKEFSLPP--IDFSKFNMNGKELCLLTKEDFLRR 49 (66)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCC--CChhhcCCCHHHHHhCCHHHHHHH
Confidence 358888999999 3445666 233333889999999999998865
No 95
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=26.61 E-value=65 Score=39.23 Aligned_cols=61 Identities=16% Similarity=0.422 Sum_probs=50.5
Q ss_pred HHHHHHHCCChhhHHHHhh-cCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 237 VVEFLHSLGLARYEEAFVR-EEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 237 v~~wL~~lgL~~Y~~~F~~-~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
|-+.|..+.|.+|.-.|.+ -++ .++.|.-..++||.+||...+ .+|+|..+|..++..+..
T Consensus 12 LleLLr~aqL~qf~s~lr~~lnvrr~~hf~yVk~eDLl~IGMgRp-~qRRLrea~kkm~~~~k~ 74 (1039)
T KOG0199|consen 12 LLELLRKAQLDQFISQLRFLLNVRRFDHFSYVKDEDLLEIGMGRP-QQRRLREAIKKMSREMKN 74 (1039)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhhhhhcchhhhhhhccCcH-HHHHHHHHHHHhhhhccc
Confidence 6677899999999999844 455 888999999999999999944 567899999999877543
No 96
>PF06568 DUF1127: Domain of unknown function (DUF1127); InterPro: IPR009506 This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.
Probab=26.56 E-value=34 Score=25.89 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=17.3
Q ss_pred CHHHHhcCChhhhccCCCC
Q 004877 259 DWDTLQWLTEEDLIGIGVT 277 (725)
Q Consensus 259 d~~~l~~Lt~~DL~~lGI~ 277 (725)
...+|..|++..|++|||+
T Consensus 16 tr~~L~~Lsd~~L~DIGl~ 34 (40)
T PF06568_consen 16 TRRELAELSDRQLADIGLT 34 (40)
T ss_pred HHHHHccCCHHHHHHcCCC
Confidence 5668999999999999998
No 97
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=26.19 E-value=58 Score=31.72 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEe
Q 004877 684 SEHCSFTELKEFVKFVSPEHIIPSV 708 (725)
Q Consensus 684 S~HAs~~EL~~fV~~lrPk~VIPtv 708 (725)
+.|++..|+.++++.++|+++|+++
T Consensus 169 ~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 169 PGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp TTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 8999999999999999999999654
No 98
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=25.86 E-value=1.1e+02 Score=26.74 Aligned_cols=59 Identities=22% Similarity=0.113 Sum_probs=40.7
Q ss_pred CCCCcccHHHHH----HHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHH
Q 004877 230 KAVDVSPVVEFL----HSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 230 ~~~~~~~v~~wL----~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~ 294 (725)
..|+...|..|| +.-+|.. .+..=.++|.+|+.|+.+|+... .+..|+ .+...++-+|.
T Consensus 11 ~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~edF~~r-~p~~Gd--iL~~hL~~lk~ 73 (76)
T cd08532 11 YQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEEDFRRR-APQGGD--TLHAQLDIWKS 73 (76)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHHHHHHH-cCCchh--HHHHHHHHHHH
Confidence 568889999999 4556777 44444889999999999998876 222343 33344444443
No 99
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=24.95 E-value=89 Score=33.91 Aligned_cols=108 Identities=14% Similarity=0.285 Sum_probs=50.4
Q ss_pred CCCcccCCccCCCCCCcHHHHHhhcccccccccC-CCccccCC--CCCCCCCCCCccccCCCCCCCCCCCcccHHHHHHH
Q 004877 167 DESVRCPLCGIDISDLNEELRQAHTNNCLDKCEN-QAQDVVFP--KHERGPRLEPEIDLGLGRSPQKAVDVSPVVEFLHS 243 (725)
Q Consensus 167 ~~~~~cp~c~~~~~~l~~~~r~~h~~~cld~~~~-~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~~wL~~ 243 (725)
..-++||.|+ .+-- .-|-.-|-..||+...- +..++.|. +..+......+-.+.+.-....-.++..+.+++
T Consensus 158 E~l~~CP~C~-~~~P--~~~i~~HLD~CL~~~S~~~~~Ss~~~~~~N~~~~S~~~FK~~~~~i~K~~~~~~~~~D~~~-- 232 (391)
T COG5432 158 EDLVHCPACS-NLVP--HNQINQHLDSCLNSPSSPSSSSSPYKNKDNSKSNSLLSFKTDDDSITKRRLRSFNSADELP-- 232 (391)
T ss_pred HhhhcCchhh-ccCc--hHHHHHHHHHHhcCCCCCcccCCCCCCCCCcccccccceecCCchhhhhhhccccchhhhh--
Confidence 3449999994 2222 23333788899855322 22233332 122222333333333321121222344444444
Q ss_pred CCChhhHHHHhhcCCCHHHHhcCChhh----hccCCCCCCChhHHHHH
Q 004877 244 LGLARYEEAFVREEIDWDTLQWLTEED----LIGIGVTALGPRKKILH 287 (725)
Q Consensus 244 lgL~~Y~~~F~~~~id~~~l~~Lt~~D----L~~lGI~~~G~RkkIl~ 287 (725)
..+.-+--.+ .+..|++.- |-+||++.-|||+-+..
T Consensus 233 -----~~d~~RLPKl---~~~~lseSkIr~KLS~mGL~T~G~kQ~l~r 272 (391)
T COG5432 233 -----LKDRVRLPKL---TYALLSESKIRSKLSEMGLPTDGHKQLLQR 272 (391)
T ss_pred -----hhhhcccccc---hhhhhhHHHHHHHHHHcCCCCccHHHHHHH
Confidence 0111111112 233455443 66899999999987654
No 100
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.85 E-value=32 Score=23.11 Aligned_cols=13 Identities=38% Similarity=1.007 Sum_probs=10.2
Q ss_pred CCCcccCCccCCC
Q 004877 167 DESVRCPLCGIDI 179 (725)
Q Consensus 167 ~~~~~cp~c~~~~ 179 (725)
+.+..||.||.+|
T Consensus 11 ~~~~fC~~CG~~l 23 (23)
T PF13240_consen 11 DDAKFCPNCGTPL 23 (23)
T ss_pred CcCcchhhhCCcC
Confidence 4458899999876
No 101
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=24.79 E-value=1.2e+02 Score=31.07 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=43.4
Q ss_pred EEEEecccCCChh-hhhhcccCCCCccEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHh--hcCCCcEEEEecccccHH
Q 004877 500 AVLHTGDFRFSEE-MASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAE--SFNPKTLFLIGSYTIGKE 575 (725)
Q Consensus 500 ~IlYTGD~~~~~~-~~~~~~l~~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l~e~I~~~--~~~~~~~vlIp~~slGre 575 (725)
.|+|+||-++..- ......|...++-++=+|+-.... ..-+.++....+.++|... ..+.+..+||+ |++|-.
T Consensus 5 ~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw--~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiG-YSFGAD 80 (192)
T PF06057_consen 5 AVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFW--SERTPEQTAADLARIIRHYRARWGRKRVVLIG-YSFGAD 80 (192)
T ss_pred EEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHh--hhCCHHHHHHHHHHHHHHHHHHhCCceEEEEe-ecCCch
Confidence 5899999998621 111112556789999898873221 1223345555555555432 34566677777 898863
No 102
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=24.78 E-value=50 Score=29.06 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=41.3
Q ss_pred CCCCcccHHHHH----HHCCChhhHHHHhhcCCCHHHHhcCChhhhccC-CCCCCChhHHHHHHHHHHHH
Q 004877 230 KAVDVSPVVEFL----HSLGLARYEEAFVREEIDWDTLQWLTEEDLIGI-GVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 230 ~~~~~~~v~~wL----~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~l-GI~~~G~RkkIl~aI~~l~~ 294 (725)
..|+...|..|| +.-+|..-.-.|..=.+++.+|+.|+.+|+.+. |. .|+ -|...++.+|.
T Consensus 8 ~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~~~p~--~Gd--vLy~~lq~~~~ 73 (78)
T cd08538 8 EYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGI--CGE--YLYFILQNIRT 73 (78)
T ss_pred cccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHHHHHHHccc--chH--HHHHHHHHHHh
Confidence 568899999999 444565432244444899999999999997755 33 343 23466666664
No 103
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=24.23 E-value=80 Score=27.82 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=39.2
Q ss_pred CCCCcccHHHHHH----HCCChhhHHHHhhcCCCHHHHhcCChhhhccC-CCCCCChhHHHHHHHHHHHH
Q 004877 230 KAVDVSPVVEFLH----SLGLARYEEAFVREEIDWDTLQWLTEEDLIGI-GVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 230 ~~~~~~~v~~wL~----~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~l-GI~~~G~RkkIl~aI~~l~~ 294 (725)
..|+...|..||. ..+|..- .|..=.++|.+|+.|+.+|+... + ..| ..|...++.||.
T Consensus 18 ~~Wt~~~V~~Wl~w~~~ef~L~~~--~~~~f~m~G~~Lc~ls~edF~~~~p--~~G--diL~~hL~~Lk~ 81 (82)
T smart00251 18 QLWTEDHVLEWLEWAVKEFSLSPI--DFSKFDMSGKELCSMSKEEFLERAP--FGG--DILWSHLQILRK 81 (82)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCC--CcccCCCCHHHHHcCCHHHHHHHcC--Cch--HHHHHHHHHHHh
Confidence 5689999999993 3444432 12223679999999999998755 4 233 455566666653
No 104
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=23.09 E-value=41 Score=28.60 Aligned_cols=45 Identities=27% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCCCcccHHHHHH-H---CCChhhHHHHhhcCCCHHHHhcCChhhhccC
Q 004877 230 KAVDVSPVVEFLH-S---LGLARYEEAFVREEIDWDTLQWLTEEDLIGI 274 (725)
Q Consensus 230 ~~~~~~~v~~wL~-~---lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~l 274 (725)
..|+...|..||. . -+|..-.-.+..=.++|.+|+.||.+|+...
T Consensus 3 ~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~~ 51 (68)
T cd08757 3 QYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEEEFREA 51 (68)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHHHHHHH
Confidence 4588889999994 2 3344321123333889999999999998764
No 105
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=22.94 E-value=1.1e+02 Score=36.88 Aligned_cols=44 Identities=11% Similarity=0.232 Sum_probs=39.8
Q ss_pred EEeccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 679 YEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 679 ~~vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
..+.|=+=+|-+-++.++..++|+++| ++||+.+..+.|+....
T Consensus 540 ~~iDyeGisDgrSik~ii~ql~Pr~lI--lvh~s~e~~r~~~~~c~ 583 (764)
T KOG1135|consen 540 EKIDYEGISDGRSIKKIIAQLSPRKLI--LVHGSAEDTRDLKHTCA 583 (764)
T ss_pred EEeeeeccccchhHHHHHhccCccEEE--EecCCchhhHHHHHHHH
Confidence 457899999999999999999999999 99999999999987654
No 106
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=22.87 E-value=1.1e+02 Score=26.73 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=41.7
Q ss_pred CCCCcccHHHHH----HHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHh
Q 004877 230 KAVDVSPVVEFL----HSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 230 ~~~~~~~v~~wL----~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
..|+...|..|| +.-+|..-. .-.-.+++|.+|+.|+.+|+.++==...| .-++.-+.-||+.
T Consensus 6 ~~Wt~~~V~~WL~Wa~~ef~L~~~~-~~~F~~m~Gk~LC~LskedF~~~ap~~~G--diL~~HL~~Lr~~ 72 (75)
T cd08540 6 TLWSTDHVRQWLEWAVKEYGLPDVD-VLLFQNIDGKELCKMTKDDFQRLTPSYNA--DILLSHLHYLRET 72 (75)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCCCC-cccccCCCHHHHHhCCHHHHHHHcCCCCc--hHHHHHHHHHHhC
Confidence 458889999999 444565522 11224689999999999998765323345 3455666666653
No 107
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.37 E-value=1.6e+02 Score=33.67 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=21.8
Q ss_pred HHhcCChhh----hccCCCCCCChhHHHHHHHHHH
Q 004877 262 TLQWLTEED----LIGIGVTALGPRKKILHTLCEI 292 (725)
Q Consensus 262 ~l~~Lt~~D----L~~lGI~~~G~RkkIl~aI~~l 292 (725)
.+..|++.+ |+++|++.-|+|..|..--.++
T Consensus 265 ~y~~l~~~~lr~kL~~lglpt~G~r~~l~~Rh~e~ 299 (397)
T TIGR00599 265 NYSLLTDSQIRKKLSELGLSTNGTRQLLQKRHNEW 299 (397)
T ss_pred chhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 355567655 4578999999999877544444
No 108
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=22.24 E-value=1.3e+02 Score=28.81 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=29.6
Q ss_pred eccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHHHh
Q 004877 681 VPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVSLL 723 (725)
Q Consensus 681 vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l 723 (725)
+-+|+|++.+.|.+.++.++|+.|+ +.. ++..+.+...+
T Consensus 28 ~~Lsa~~n~~~L~~q~~~f~p~~v~--i~~--~~~~~~l~~~~ 66 (129)
T PF02670_consen 28 VALSAGSNIEKLAEQAREFKPKYVV--IAD--EEAYEELKKAL 66 (129)
T ss_dssp EEEEESSTHHHHHHHHHHHT-SEEE--ESS--HHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHhCCCEEE--EcC--HHHHHHHHHHh
Confidence 5689999999999999999999988 443 44555555544
No 109
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=21.89 E-value=81 Score=30.40 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=20.6
Q ss_pred EEeccCC--CCCHHHHHHHHHHcCCCEEEEEe
Q 004877 679 YEVPYSE--HCSFTELKEFVKFVSPEHIIPSV 708 (725)
Q Consensus 679 ~~vpyS~--HAs~~EL~~fV~~lrPk~VIPtv 708 (725)
--+|.++ ..+.+|..++++.++|+.|||++
T Consensus 132 l~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 132 LFLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp EEEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred EEecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 3445555 35789999999999999999985
No 110
>PRK00685 metal-dependent hydrolase; Provisional
Probab=21.60 E-value=1.1e+02 Score=31.08 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEee
Q 004877 684 SEHCSFTELKEFVKFVSPEHIIPSVN 709 (725)
Q Consensus 684 S~HAs~~EL~~fV~~lrPk~VIPtv~ 709 (725)
..|.+.+|..++++.++|+++||++.
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H~ 193 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMHY 193 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEecc
Confidence 45999999999999999999998886
No 111
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=21.27 E-value=1.4e+02 Score=33.30 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=43.8
Q ss_pred HHHHHHCCChhh-HHHHhhcCC-CHHHHhcCChhhhccC-CCCCCChhHHHHHHHHHH
Q 004877 238 VEFLHSLGLARY-EEAFVREEI-DWDTLQWLTEEDLIGI-GVTALGPRKKILHTLCEI 292 (725)
Q Consensus 238 ~~wL~~lgL~~Y-~~~F~~~~i-d~~~l~~Lt~~DL~~l-GI~~~G~RkkIl~aI~~l 292 (725)
-+.|...|++.| ...+.+++| +.+.+...+..+|.++ ||. .....+++.++.++
T Consensus 28 ~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~is-~~~~~~~~~~~~~~ 84 (342)
T PLN03186 28 IEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGIS-EAKVEKILEAASKL 84 (342)
T ss_pred HHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCC-HHHHHHHHHHHHHh
Confidence 477888898766 677899999 9999999999999887 888 55666777777665
No 112
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=21.10 E-value=36 Score=23.98 Aligned_cols=10 Identities=40% Similarity=1.308 Sum_probs=4.8
Q ss_pred ccCCccCCCC
Q 004877 171 RCPLCGIDIS 180 (725)
Q Consensus 171 ~cp~c~~~~~ 180 (725)
+||+|+..|-
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 5888887654
Done!