Query 004877
Match_columns 725
No_of_seqs 462 out of 3151
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:34:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b87_A DNA cross-LINK repair 1 100.0 1.3E-50 4.3E-55 442.6 35.8 341 380-724 16-359 (367)
2 3zdk_A 5' exonuclease apollo; 100.0 1.9E-41 6.4E-46 366.1 31.9 286 396-708 5-299 (336)
3 3iek_A Ribonuclease TTHA0252; 100.0 1.2E-35 4E-40 330.6 31.3 297 413-724 50-414 (431)
4 2i7t_A Cleavage and polyadenyl 100.0 1.5E-34 5E-39 323.5 32.0 299 413-724 62-432 (459)
5 3af5_A Putative uncharacterize 100.0 8.3E-33 2.8E-37 322.4 31.0 300 413-723 247-631 (651)
6 2xr1_A Cleavage and polyadenyl 100.0 5.5E-32 1.9E-36 314.9 30.5 301 413-724 236-621 (640)
7 2ycb_A Beta-CAsp RNAse, cleava 100.0 7.6E-32 2.6E-36 313.5 29.2 300 413-723 233-616 (636)
8 3zq4_A Ribonuclease J 1, RNAse 100.0 7.8E-31 2.7E-35 300.5 28.1 300 413-722 65-402 (555)
9 3bk2_A RNAse J, metal dependen 100.0 8.6E-29 2.9E-33 284.0 33.0 302 413-724 73-419 (562)
10 2az4_A Hypothetical protein EF 99.9 4.7E-26 1.6E-30 251.9 28.1 279 412-714 82-408 (429)
11 2i7x_A Protein CFT2; polyadeny 99.9 7.3E-23 2.5E-27 240.6 24.0 245 414-672 53-381 (717)
12 1zkp_A Hypothetical protein BA 99.7 1.3E-17 4.6E-22 172.2 14.7 184 399-594 51-262 (268)
13 2e7y_A TRNAse Z; tRNA maturati 99.7 2E-16 7E-21 163.3 11.7 181 399-593 18-273 (280)
14 1y44_A Ribonuclease Z; zinc-de 99.7 1.5E-15 5.3E-20 160.7 17.1 145 399-547 30-254 (320)
15 2cbn_A Ribonuclease Z; phospho 99.6 1.8E-15 6.2E-20 158.7 16.0 163 399-572 32-274 (306)
16 3g1p_A Protein PHNP; C-P lyase 99.6 8E-16 2.7E-20 158.7 12.9 167 397-573 45-226 (258)
17 3md7_A Beta-lactamase-like; ss 99.6 1.1E-14 3.8E-19 153.1 17.3 174 401-592 78-283 (293)
18 3k1r_B Usher syndrome type-1G 99.6 8.1E-16 2.8E-20 130.7 6.7 70 234-304 2-71 (74)
19 1ucv_A Ephrin type-A receptor 99.6 5.1E-15 1.7E-19 127.9 7.4 69 231-299 4-73 (81)
20 3h8m_A Ephrin type-A receptor 99.5 7.5E-15 2.6E-19 129.3 7.5 68 230-297 21-89 (90)
21 2eao_A Ephrin type-B receptor 99.5 1.2E-14 4.1E-19 130.2 8.9 70 230-299 18-88 (99)
22 3zwf_A Zinc phosphodiesterase 99.5 5.4E-14 1.8E-18 153.3 15.8 145 397-545 25-294 (368)
23 2kso_A Ephrin type-A receptor 99.5 5.9E-15 2E-19 127.8 6.0 68 230-297 12-80 (82)
24 1b4f_A EPHB2; SAM domain, EPH 99.5 8.5E-15 2.9E-19 126.7 6.3 69 231-299 8-77 (82)
25 2e8n_A Ephrin type-A receptor 99.5 1.5E-14 5.2E-19 126.8 7.9 70 230-299 8-78 (88)
26 1b0x_A Protein (EPHA4 receptor 99.5 9.4E-15 3.2E-19 129.7 6.3 69 230-298 22-91 (94)
27 3jxp_A Coenzyme PQQ synthesis 99.5 4.2E-14 1.4E-18 151.5 12.4 119 413-535 81-227 (321)
28 2qkq_A Ephrin type-B receptor 99.5 6.3E-15 2.1E-19 127.8 3.7 70 230-299 11-81 (83)
29 2gle_A Neurabin-1; SAM domain, 99.5 2.1E-14 7E-19 121.7 6.2 68 230-297 5-72 (74)
30 3kka_C Ephrin type-A receptor 99.5 1.2E-14 4E-19 127.0 4.7 68 230-297 17-85 (86)
31 2f3n_A SH3 and multiple ankyri 99.5 1.2E-14 4.3E-19 123.9 2.8 68 231-298 4-71 (76)
32 3bq7_A Diacylglycerol kinase d 99.5 4.1E-14 1.4E-18 122.2 5.3 69 230-298 8-76 (81)
33 3rpc_A Possible metal-dependen 99.5 6.7E-13 2.3E-17 137.4 15.5 129 414-549 64-213 (264)
34 2kg5_A ARF-GAP, RHO-GAP domain 99.4 3.1E-14 1E-18 127.7 4.1 67 233-299 25-92 (100)
35 2k4p_A Phosphatidylinositol-3, 99.4 4.8E-14 1.6E-18 123.1 4.5 64 230-293 22-86 (86)
36 1x40_A ARAP2; ASAP-related pro 99.4 5.5E-14 1.9E-18 124.0 4.6 67 234-300 15-82 (91)
37 3hil_A Ephrin type-A receptor 99.4 4.7E-14 1.6E-18 122.1 4.1 63 230-292 19-82 (82)
38 3kl7_A Putative metal-dependen 99.4 1.2E-12 4E-17 133.9 14.8 133 397-548 43-195 (235)
39 3bs5_B Connector enhancer of k 99.4 9.3E-14 3.2E-18 119.4 5.2 69 230-298 5-75 (80)
40 2ean_A Connector enhancer of k 99.4 1.1E-13 3.8E-18 119.8 5.0 70 229-298 8-79 (83)
41 2dl0_A SAM and SH3 domain-cont 99.4 4E-14 1.4E-18 126.3 1.8 68 230-297 19-87 (97)
42 2e8o_A SAM domain and HD domai 99.4 1.2E-13 4.1E-18 124.6 4.7 69 228-296 26-96 (103)
43 1v38_A SAM-domain protein sams 99.4 3E-13 1E-17 116.0 5.6 64 232-295 10-74 (78)
44 2eam_A Putative 47 kDa protein 99.4 1.2E-13 4.1E-18 118.9 1.9 65 231-295 9-76 (80)
45 3bs7_A Protein aveugle; sterIl 99.4 2.9E-13 1E-17 115.7 4.2 68 230-297 4-73 (78)
46 2y9u_A Tumor protein 63; apopt 99.3 6.9E-13 2.4E-17 110.9 5.7 63 234-297 4-67 (69)
47 1v85_A Similar to ring finger 99.3 4.6E-13 1.6E-17 118.1 4.7 68 229-296 17-88 (91)
48 1kw4_A Polyhomeotic; SAM domai 99.3 8.3E-13 2.8E-17 116.0 5.4 70 228-298 13-84 (89)
49 2d8c_A Phosphatidylcholine:cer 99.3 2.6E-12 8.9E-17 114.5 8.4 68 230-299 18-87 (97)
50 3bs5_A Protein aveugle; sterIl 99.3 6.5E-13 2.2E-17 120.4 4.2 69 229-297 23-93 (106)
51 2y9t_A Tumor protein 63; apopt 99.3 1.3E-12 4.6E-17 112.6 4.9 67 231-298 3-70 (82)
52 1wwv_A Connector enhancer of k 99.3 1.4E-12 4.6E-17 115.1 4.3 68 229-298 11-80 (91)
53 2ke7_A Ankyrin repeat and ster 99.3 6.7E-13 2.3E-17 119.7 2.0 65 230-294 18-85 (103)
54 2lmr_A ODIN, ankyrin repeat an 99.3 8.9E-13 3E-17 118.3 2.1 63 233-295 28-93 (101)
55 2d3d_A VTS1 protein; RNA bindi 99.2 6.3E-12 2.2E-16 109.3 6.3 63 233-297 17-79 (88)
56 1ow5_A Serine/threonine-protei 99.2 1.8E-12 6.2E-17 111.0 2.4 63 235-297 16-79 (85)
57 2wyl_A L-ascorbate-6-phosphate 99.2 6.7E-11 2.3E-15 128.1 15.2 117 413-533 108-251 (360)
58 3bv6_A Metal-dependent hydrola 99.2 7.1E-11 2.4E-15 129.0 14.6 117 413-533 132-276 (379)
59 2r2d_A AGR_PTI_140P, Zn-depend 99.2 9.2E-11 3.1E-15 120.9 12.4 98 414-513 103-220 (276)
60 3sei_A Caskin-1; SAM domain, p 99.2 1.5E-11 5.1E-16 118.0 5.9 63 234-296 79-142 (149)
61 2es6_A VTS1P; SAM domain, prot 99.2 1.8E-11 6.1E-16 108.5 4.7 63 233-297 30-92 (101)
62 3sei_A Caskin-1; SAM domain, p 99.2 9.3E-12 3.2E-16 119.4 3.1 63 232-294 8-70 (149)
63 3m8t_A 'BLR6230 protein; subcl 99.1 1.4E-10 4.8E-15 120.4 11.3 114 397-510 61-206 (294)
64 1vjn_A Zn-dependent hydrolase 99.1 2.3E-10 7.8E-15 115.9 12.1 122 395-547 24-158 (220)
65 2b6g_A VTS1P; alpha-helix, pen 99.1 3.2E-11 1.1E-15 110.4 5.0 63 233-297 48-110 (119)
66 3dha_A N-acyl homoserine lacto 99.1 2.9E-10 9.8E-15 115.9 12.4 98 414-514 100-203 (254)
67 1k07_A FEZ-1 beta-lactamase; m 99.1 1.8E-10 6.1E-15 118.3 11.0 111 399-509 33-177 (263)
68 1e5d_A Rubredoxin\:oxygen oxid 99.1 2.4E-10 8.1E-15 124.3 12.4 107 399-508 42-167 (402)
69 1ycg_A Nitric oxide reductase; 99.1 4.8E-10 1.6E-14 121.7 13.8 107 399-508 43-168 (398)
70 3hnn_A Putative diflavin flavo 99.1 1.8E-10 6.2E-15 118.9 9.9 105 400-507 51-175 (262)
71 3adr_A Putative uncharacterize 99.1 1.5E-10 5.2E-15 118.1 9.0 106 400-510 29-169 (261)
72 2ohh_A Type A flavoprotein FPR 99.1 3.4E-10 1.2E-14 123.1 12.4 106 400-508 44-172 (404)
73 3l6n_A Metallo-beta-lactamase; 99.1 3.7E-10 1.3E-14 112.4 10.5 106 399-509 39-161 (219)
74 2xf4_A Hydroxyacylglutathione 99.0 2.4E-10 8.2E-15 113.2 6.8 109 400-511 24-156 (210)
75 2kiv_A Ankyrin repeat and ster 99.0 5.2E-11 1.8E-15 114.0 1.9 63 233-295 13-78 (148)
76 4ax1_B Metallo-beta-lactamase 99.0 1.5E-09 5E-14 112.9 12.8 114 397-510 64-210 (303)
77 3esh_A Protein similar to meta 99.0 4.1E-10 1.4E-14 116.9 8.4 95 414-513 100-213 (280)
78 2kiv_A Ankyrin repeat and ster 99.0 1.3E-10 4.4E-15 111.3 3.7 59 233-291 87-147 (148)
79 4efz_A Metallo-beta-lactamase 99.0 8.8E-10 3E-14 116.0 10.1 98 414-512 64-180 (298)
80 1pk1_B Sex COMB on midleg CG94 99.0 1.8E-10 6.1E-15 101.1 3.7 66 230-296 15-83 (89)
81 2q9u_A A-type flavoprotein; fl 99.0 2.6E-09 9E-14 116.9 13.1 107 399-508 48-173 (414)
82 1sml_A Protein (penicillinase) 98.9 2.6E-09 8.8E-14 110.0 11.0 112 399-510 46-188 (269)
83 1m2x_A Class B carbapenemase B 98.9 2E-09 6.8E-14 107.8 9.7 93 413-510 63-158 (223)
84 1mqo_A Beta-lactamase II; alph 98.9 1.9E-09 6.6E-14 108.2 9.6 107 399-510 49-172 (227)
85 1xm8_A Glyoxalase II; structur 98.9 9.4E-10 3.2E-14 113.7 7.1 100 401-510 24-135 (254)
86 2gcu_A Putative hydroxyacylglu 98.9 1.2E-09 4.1E-14 112.2 7.7 102 400-511 28-147 (245)
87 1a7t_A Metallo-beta-lactamase; 98.9 2.2E-09 7.4E-14 108.3 9.4 107 399-510 45-168 (232)
88 2vw8_A PA1000, PQSE; quinolone 98.9 2.5E-09 8.6E-14 112.1 10.1 108 399-509 33-183 (303)
89 3aj3_A MLR6805 protein, 4-pyri 98.9 1.7E-09 5.7E-14 111.5 8.5 96 414-513 88-214 (274)
90 2zo4_A Metallo-beta-lactamase 98.9 2.3E-09 7.9E-14 112.7 9.4 94 414-510 62-194 (317)
91 4hl2_A Beta-lactamase NDM-1; s 98.9 6.7E-10 2.3E-14 112.7 4.0 109 399-510 56-185 (243)
92 2p18_A Glyoxalase II; metallop 98.9 3.1E-09 1.1E-13 113.1 9.3 90 413-511 83-185 (311)
93 1qh5_A Glyoxalase II, protein 98.9 4.4E-09 1.5E-13 109.1 9.9 100 401-510 24-138 (260)
94 1ztc_A Hypothetical protein TM 98.9 9.4E-10 3.2E-14 110.6 4.6 112 399-512 43-180 (221)
95 2zwr_A Metallo-beta-lactamase 98.9 1.8E-09 6.1E-14 107.0 6.6 106 399-510 21-148 (207)
96 3tp9_A Beta-lactamase and rhod 98.9 1.2E-09 4E-14 122.4 5.8 110 399-510 26-153 (474)
97 1oxj_A RNA-binding protein sma 98.9 1.2E-09 4.2E-14 105.3 4.7 73 232-307 5-77 (173)
98 3r2u_A Metallo-beta-lactamase 98.8 1.6E-09 5.3E-14 121.5 5.4 110 400-511 48-174 (466)
99 4ad9_A Lactb2, beta-lactamase- 98.8 3.9E-09 1.3E-13 109.9 7.9 108 399-510 40-169 (289)
100 2qed_A Hydroxyacylglutathione 98.8 3.8E-09 1.3E-13 109.4 7.7 97 400-510 29-138 (258)
101 1p9e_A Methyl parathion hydrol 98.8 2E-09 7E-14 115.1 5.3 95 414-512 139-261 (331)
102 2fhx_A SPM-1; metallo-beta-lac 98.8 1.1E-08 3.7E-13 103.5 9.5 92 416-510 70-188 (246)
103 2y8b_A Metallo-B-lactamase; hy 98.8 1.4E-08 4.8E-13 105.0 10.1 93 414-511 105-202 (265)
104 4dik_A Flavoprotein; TM0755, e 98.8 2.9E-08 1E-12 109.7 11.9 89 413-508 88-182 (410)
105 3q6v_A Beta-lactamase; metallo 98.7 9.9E-09 3.4E-13 102.7 7.4 95 413-511 62-173 (233)
106 3iog_A Beta-lactamase; hydrola 98.7 1.8E-08 6.1E-13 100.4 8.7 106 399-510 31-169 (227)
107 1jjt_A IMP-1 metallo beta-lact 98.7 1.1E-08 3.7E-13 103.0 6.7 106 399-510 41-162 (228)
108 3tad_C Liprin-beta-1; protein 98.7 5.6E-09 1.9E-13 108.4 4.5 66 230-295 16-82 (265)
109 3tad_C Liprin-beta-1; protein 98.7 1.1E-08 3.8E-13 106.2 4.7 66 232-297 90-155 (265)
110 2bib_A CBPE, teichoic acid pho 98.6 4.3E-08 1.5E-12 111.7 7.4 114 413-529 76-226 (547)
111 2cfu_A SDSA1; SDS-hydrolase, l 98.5 3.5E-07 1.2E-11 106.9 10.9 108 400-510 132-303 (658)
112 4eyb_A Beta-lactamase NDM-1; m 98.4 2E-07 6.7E-12 96.7 6.4 96 413-511 111-213 (270)
113 3tac_B Liprin-alpha-2; transfe 98.3 4.6E-07 1.6E-11 95.8 7.0 69 230-298 37-108 (334)
114 2dkz_A Hypothetical protein LO 98.3 1E-06 3.5E-11 75.2 6.5 62 231-293 17-80 (84)
115 1uqv_A STE50 protein; SAM, ste 98.2 4.8E-07 1.7E-11 77.5 2.8 66 229-294 9-78 (85)
116 1dxs_A P53-like transcription 98.1 3E-06 1E-10 71.6 5.4 64 233-297 5-69 (80)
117 2p97_A Hypothetical protein; p 98.1 6.9E-07 2.3E-11 88.2 1.8 100 399-511 32-142 (201)
118 2yhe_A SEC-alkyl sulfatase; hy 97.2 9.3E-07 3.2E-11 103.3 0.0 95 413-510 170-314 (668)
119 3tac_B Liprin-alpha-2; transfe 98.0 6.2E-06 2.1E-10 87.3 6.0 64 233-296 161-226 (334)
120 2p4z_A Metal-dependent hydrola 97.9 2E-05 7E-10 82.3 9.0 108 414-533 68-200 (284)
121 2l5y_A Stromal interaction mol 97.8 4.4E-06 1.5E-10 79.6 2.0 57 230-286 79-140 (150)
122 2k60_A Protein (stromal intera 97.7 1.2E-05 4.2E-10 76.5 2.5 61 230-290 79-145 (150)
123 2eap_A Lymphocyte cytosolic pr 97.1 0.00051 1.7E-08 59.3 4.8 45 229-274 19-64 (90)
124 3h3e_A Uncharacterized protein 95.5 0.0046 1.6E-07 64.4 2.4 44 403-447 40-93 (267)
125 3idw_A Actin cytoskeleton-regu 95.0 0.014 4.8E-07 48.6 3.2 53 239-292 7-64 (72)
126 2qar_B Telsam domain; polymer, 78.2 0.85 2.9E-05 39.9 1.9 62 230-296 13-78 (93)
127 2e8m_A Epidermal growth factor 76.7 3.4 0.00012 36.5 5.2 60 231-297 33-94 (99)
128 1sv0_C Modulator of the activi 75.6 1.5 5.3E-05 37.2 2.7 62 230-296 12-80 (82)
129 1wwu_A Hypothetical protein FL 72.0 4.6 0.00016 35.6 4.9 60 232-297 24-85 (99)
130 2h80_A STAR-related lipid tran 61.9 3.7 0.00013 34.4 2.1 30 235-264 22-53 (81)
131 2dky_A RHO-GTPase-activating p 49.3 12 0.00039 32.1 3.1 29 236-264 25-55 (91)
132 1ji7_A ETS-related protein TEL 46.2 3.6 0.00012 35.6 -0.4 61 230-295 13-77 (89)
133 3vhs_A ATPase wrnip1; zinc fin 42.6 6.7 0.00023 26.1 0.5 22 169-197 6-27 (29)
134 2lpe_A Kinase suppressor of RA 39.6 6 0.0002 37.4 -0.1 61 233-294 82-146 (149)
135 2i7x_A Protein CFT2; polyadeny 39.6 14 0.00049 43.3 3.1 44 679-724 656-699 (717)
136 2qol_A Ephrin receptor; recept 35.1 9.8 0.00033 40.2 0.7 38 230-267 335-373 (373)
137 1x66_A Friend leukemia integra 33.4 46 0.0016 29.1 4.6 62 230-295 25-91 (98)
138 1l8d_A DNA double-strand break 31.5 11 0.00039 33.2 0.3 13 169-181 47-59 (112)
139 3mjh_B Early endosome antigen 27.2 15 0.00052 26.1 0.3 17 167-183 3-19 (34)
140 3kl7_A Putative metal-dependen 21.9 49 0.0017 32.6 3.1 40 683-724 184-223 (235)
141 1z3e_B DNA-directed RNA polyme 21.4 86 0.003 25.9 3.9 39 239-277 9-50 (73)
142 2kz3_A Putative uncharacterize 21.2 1.5E+02 0.0052 25.0 5.5 50 245-298 11-63 (83)
143 1b22_A DNA repair protein RAD5 21.1 81 0.0028 28.3 4.0 53 239-292 26-81 (114)
144 2hwk_A Helicase NSP2; rossman 20.4 1.2E+02 0.0042 31.7 5.6 93 484-586 175-274 (320)
No 1
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=100.00 E-value=1.3e-50 Score=442.60 Aligned_cols=341 Identities=40% Similarity=0.741 Sum_probs=278.4
Q ss_pred cccCCCCCcccCCCCcccCCCCceEeCCccccC-CCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCCCC
Q 004877 380 AKDQSKGRKHKDIPTWCCVPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPW 458 (725)
Q Consensus 380 ~~~~~~~gk~~~~p~~~~ipg~~~~ID~f~~~~-~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~~~ 458 (725)
...+...+..+.||+|+.+||.++.||.|++.. .+|++|||||+|.||++||+..+ .++||+++.|..++...++...
T Consensus 16 ~~~~~~~~~~~~~p~~~~~pG~~ilVD~f~~~~~~~IdaI~lTH~H~DHiggl~~~~-~~pIy~s~~t~~ll~~~l~~~~ 94 (367)
T 4b87_A 16 ESSNVGGSRKKTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHF-TFPVYCSEITGNLLKNKLHVQE 94 (367)
T ss_dssp -------CCCCCCCGGGBCTTSSEEESCCSSSSCTTCCEEECCCCCHHHHTTCSTTC-CSCEEECHHHHHHHHHHSCCCG
T ss_pred ccccCCCCCCCCCceEEEECCCeEEEeCCCcCCccCCcEEEECcChHHHhCCccccc-CCcEEECHHHHHHHHHHhcccc
Confidence 344555666678999999999999999998854 58999999999999999999644 5799999999999998887655
Q ss_pred cceEEecCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCC
Q 004877 459 DRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLY 538 (725)
Q Consensus 459 ~~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~ 538 (725)
..++.++.++++.+++++|+++++||++|+++|+|+..+|++|+||||+++.+.... +.+...++|+||+||||+++.+
T Consensus 95 ~~~~~l~~g~~~~ig~~~v~~~~agH~~gs~~~~i~~~~g~~il~tGD~~~~~~~~~-~~l~~~~~D~Li~EsTy~~~~~ 173 (367)
T 4b87_A 95 QYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMER-SLLADQKVHMLYLDTTYCSPEY 173 (367)
T ss_dssp GGEEECCBTSCEEETTEEEEEEECSSSTTCEEEEEECTTSCEEEECCSCCCCGGGGG-SGGGTSCCCEEEECCTTCSTTC
T ss_pred ceEEEeCCCCEEEECCEEEEEEeCCCcCCcEEEEEEcCCCcEEEEecCcccCcccch-hhhccCCCCEEEEecccCCCCC
Confidence 567889999999999999999999999999999998657778999999999887755 3344568999999999999989
Q ss_pred CCCCHHHHHHHHHHHHHHh-hcCCCcEEEEecccccHHHHHHHHHHHcCCcEEEechHHHHHHHcCCCcccccccccCCC
Q 004877 539 DFPKQEAVIQFVIEAIQAE-SFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEH 617 (725)
Q Consensus 539 ~~p~~~e~~~~l~e~I~~~-~~~~~~~vlIp~~slGreqll~eLa~~l~~~I~V~~~~~~I~~~lg~~~~~~~~it~~~~ 617 (725)
.+|+++++++.+.+.+.+. ..+++..|++++|++||+|+++++++.++++|++++.++++++++++.. ...++|.++.
T Consensus 174 ~~ps~~~~~~~~~~~i~~~~~~~g~~~v~~~a~~igr~q~ll~ia~~~g~ki~v~~~~~~il~~l~~~~-~~~~~t~d~~ 252 (367)
T 4b87_A 174 TFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPE-INSLITTDMC 252 (367)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSCCHHHHHHHHHHTTCCEECCHHHHHHHHTTCCTT-HHHHEESCGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhCCEEEEeHHHHHHHHhcCCch-hhhhcccCCc
Confidence 9999988877665544321 1245667789999999999999999999999999999999999998653 3456888888
Q ss_pred CCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcch-hhhcCceEEEEeccCCCCCHHHHHHHH
Q 004877 618 ESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGR-RWQQGTIIRYEVPYSEHCSFTELKEFV 696 (725)
Q Consensus 618 e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr-~~~~G~~~v~~vpyS~HAs~~EL~~fV 696 (725)
+++||++|++.++ ++.+..+..++.++++.+|+|.||||.+.......... .-.+|.+.++.+|||+||||.||.+||
T Consensus 253 ~~~vh~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~ptgw~~~~~~~~~~~~~~~~~~~~~~~~vpySeHss~~EL~~fv 331 (367)
T 4b87_A 253 SSLVHLLPMMQIN-FKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQTKGNISIYGIPYSEHSSYLEMKRFV 331 (367)
T ss_dssp GCSEEEEEGGGCS-HHHHHHHHHSGGGCCCEEEEEEECC----------CCCCCEEETTEEEEEECCCSSCCHHHHHHHH
T ss_pred cceEEEeecCcCC-HHHHHHHHHHhhcccccEEEEcCcccccCCCCCcccccccccCCceEEEEEeccCCCCHHHHHHHH
Confidence 9999999998874 67787777778889999999999999875432211100 012466678999999999999999999
Q ss_pred HHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 697 KFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 697 ~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
+.++|++|||||+.|+++++++|..++.
T Consensus 332 ~~l~p~~iiptv~~~~~~~~~~m~~~~~ 359 (367)
T 4b87_A 332 QWLKPQKIIPTVNVGTWKSRSTMEKYFR 359 (367)
T ss_dssp HHHCCSEEEECSSCSSHHHHHHHHHHHH
T ss_pred HhcCCCeEECeecCCCHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 2
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=366.11 Aligned_cols=286 Identities=30% Similarity=0.566 Sum_probs=241.8
Q ss_pred ccCCCCceEeCCcccc-CCCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEE--
Q 004877 396 CCVPGTPFRVDAFKYL-RGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTI-- 472 (725)
Q Consensus 396 ~~ipg~~~~ID~f~~~-~~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~I-- 472 (725)
+.+||.+|.||.|++. ..+|++|||||+|.||++||+.++ .++|||++.|+.+++.+++.....++.+++++++.+
T Consensus 5 ~~i~g~~i~vD~f~~~~~~~i~ai~lTH~H~DHiggl~~l~-~~pVy~s~~t~~ll~~~l~~~~~~~~~~~~~~~~~i~~ 83 (336)
T 3zdk_A 5 VLIPHTPIAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTW-ARPLYCSPITAHLLHRHLQVSKQWIQALEVGESHVLPL 83 (336)
T ss_dssp EECTTSSEEESCCCHHHHCSSCEEECCCCCGGGSTTCSTTC-CSCEEECHHHHHHHHHHHCCCTTTEEECCTTSEEEEES
T ss_pred eEeCCCCEeecCCcccCCCCCCEEEECCChHHHHCchHHHc-CCCEEecHHHHHHHHHhhhhcccceEecCCCCeEEecC
Confidence 3689999999999874 368999999999999999999877 689999999999999888765446788899998877
Q ss_pred -----CCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhccc-CCCCccEEEEecCCCCCCCCCCCHHHH
Q 004877 473 -----AGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVL-QTCPIHTLILDTTYCNPLYDFPKQEAV 546 (725)
Q Consensus 473 -----ggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l-~~~~~DlLIlEaTy~~~~~~~p~~~e~ 546 (725)
++++|++++++|++|+++|+|+. ++++|+||||+++.+.....+.+ ...++|+||+||||+++.+.+|+++++
T Consensus 84 ~~~~~g~~~v~~~~~~H~~gs~~~~i~~-~~~~i~~tGD~~~~~~~~~~~~l~~~~~vD~Li~DsT~~~~~~~~pse~~v 162 (336)
T 3zdk_A 84 DEIGQETMTVTLLDANHCPGSVMFLFEG-YFGTILYTGDFRYTPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEA 162 (336)
T ss_dssp SSSSSCEEEEEEEECSSSTTCEEEEEEE-TTEEEEECCSCCCCGGGGGCGGGSSCCCCSEEEECCTBCCTTCCCCCHHHH
T ss_pred cccccCCEEEEEEECCCCcceEEEEEEe-CCceEEEeCCCCCCcccccchhhhccCCccEEEEecCCCCCCCCCCCHHHH
Confidence 78999999999999999999996 67789999999998877655433 357899999999999998889999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHcCCcEEEechHHHHHHHcCCCcccccccccCCCCCcEEEEeC
Q 004877 547 IQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPM 626 (725)
Q Consensus 547 ~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l~~~I~V~~~~~~I~~~lg~~~~~~~~it~~~~e~~v~vvp~ 626 (725)
.+.+.+++++ ..+++|+|++|++||+|+++++|+.++++|++.+..+++++++|+.. .++.++..+++++++.
T Consensus 163 ~~~l~~~i~~---~~~g~vii~~f~vgR~q~i~~~a~~~grkV~v~gr~~~~~~~lg~~~----~~~~~~~~~~i~~~~~ 235 (336)
T 3zdk_A 163 AHQIVQLIRK---HPQHNIKIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLAD----VFTVEEKAGRIHAVDH 235 (336)
T ss_dssp HHHHHHHHHT---CTTSEEEEEECSSSCHHHHHHHHHHHTCCEECCHHHHHHHHHTTCCS----CEESCGGGCSEEEEEG
T ss_pred HHHHHHHHHh---CCCCcEEEeecchHHHHHHHHHHHHcCCEEEEEhHHHHHHHhcCCcc----ccCCHhHcCCCCcchh
Confidence 9999999874 34678999999999999999999999999999999999999999752 4676777789999988
Q ss_pred CCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcchhhhcCceEEEEeccCCCCCHHHHHHHHHHcCCCEEEE
Q 004877 627 WTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEHCSFTELKEFVKFVSPEHIIP 706 (725)
Q Consensus 627 ~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr~~~~G~~~v~~vpyS~HAs~~EL~~fV~~lrPk~VIP 706 (725)
..++ ...+. +|. +....|.+.+|||... +++ .| ++.+|||+||+++||++|+++++|+.+||
T Consensus 236 ~~i~-~~al~----r~~-~~~~~i~i~~S~~~ip-g~~--------~~---~~~vh~S~Ha~~~EL~~~~~~~~P~~~iP 297 (336)
T 3zdk_A 236 MEIC-HSNML----RWN-QTHPTIAILPTSRKIH-SSH--------PD---IHVIPYSDHSSYSELRAFVAALKPCQVVP 297 (336)
T ss_dssp GGCS-HHHHH----HHH-HHSCEEEEEECSSCCC-CSS--------TT---EEEECCCSSCBHHHHHHHHHHHCCSCEEE
T ss_pred heeH-HHHHH----hhh-CcCCeEEEEecccccc-CCc--------cC---ceeeEecCCCCHHHHHHHHHHhCCCEEEE
Confidence 7765 22222 233 3345788889998652 221 23 36799999999999999999999999998
Q ss_pred Ee
Q 004877 707 SV 708 (725)
Q Consensus 707 tv 708 (725)
+|
T Consensus 298 vh 299 (336)
T 3zdk_A 298 IV 299 (336)
T ss_dssp SC
T ss_pred EE
Confidence 87
No 3
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=100.00 E-value=1.2e-35 Score=330.65 Aligned_cols=297 Identities=17% Similarity=0.242 Sum_probs=229.7
Q ss_pred CCccEEEeccCchhhhCChhhhc---CCceEEeCHHHHHHHHHHhC------C-C----------CcceEEecCCCEEEE
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIG------I-P----------WDRLQVLPLNQKTTI 472 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~---~~~pIY~s~~T~~ll~~~lg------~-~----------~~~~~~l~~ge~~~I 472 (725)
.+|++|||||+|.||++|++.+. ..++||+++.|.+++...+. . + ...++.+++++++.+
T Consensus 50 ~~Id~VllTH~H~DH~gglp~l~~~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~l 129 (431)
T 3iek_A 50 KEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRL 129 (431)
T ss_dssp GGCCEEECSCCCHHHHTTHHHHHHTTCCSCEEECHHHHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHTEEECCTTCCEEE
T ss_pred ccCCEEEECCCChHHhccHHHHHHcCCCCeEEEcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHhccEEcCCCCeEEe
Confidence 46899999999999999999653 35899999999988774321 1 0 024788999999999
Q ss_pred CCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 004877 473 AGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIE 552 (725)
Q Consensus 473 ggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l~e 552 (725)
++++|+++++||++|+++|+|+. ++++|+||||+++.............++|+||+||||+++. |+++.+..+.+.+
T Consensus 130 ~g~~v~~~~agH~~Gs~~~~i~~-~~~~ilfsGD~~~~~~~~l~~~~~~~~~D~LI~EsTy~~~~--h~~~~~~~~~l~~ 206 (431)
T 3iek_A 130 GALSLAFGQAGHLPGSAFVVAQG-EGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRP--HRPYRETVREFLE 206 (431)
T ss_dssp TTEEEEEEECCSSTTCEEEEEEE-TTEEEEECCCCCCTTSSSSCCCCBCCCCSEEEEECTTTTCC--CCCHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCcCceEEEEEE-CCEEEEEeCCCCCCCCcccCCccccCCccEEEEEcccCCcC--CCChHHHHHHHHH
Confidence 99999999999999999999996 77889999999987654432112356899999999999873 7788888888888
Q ss_pred HHHHhhcCCCcEEEEecccccHHHHHHHHHHHcC-----CcEEEechHH-HHHHHcC----CCcc---------------
Q 004877 553 AIQAESFNPKTLFLIGSYTIGKERLFLEVARVLR-----KKIYVNAAKF-RVLKCLD----FSKE--------------- 607 (725)
Q Consensus 553 ~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l~-----~~I~V~~~~~-~I~~~lg----~~~~--------------- 607 (725)
.+++ +++.++.|+||+|++||.|+++.+++.+. .|||+++.++ ++.+.+. +..+
T Consensus 207 ~i~~-~~~~gg~vlIp~fa~gR~qell~~l~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~ 285 (431)
T 3iek_A 207 ILEK-TLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRP 285 (431)
T ss_dssp HHHH-HHHTTCEEEEECCTTTHHHHHHHHHHHHGGGSCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSCTTCC
T ss_pred HHHH-HHHcCCeEEEEeccchHHHHHHHHHHHHHHhccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCC
Confidence 8874 56788999999999999998888877765 8999997554 4433331 1110
Q ss_pred -ccccccc--------CCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcchhhhcCceE-
Q 004877 608 -DIQWFTT--------NEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTII- 677 (725)
Q Consensus 608 -~~~~it~--------~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr~~~~G~~~- 677 (725)
....+.. +.....|++++.+|+. ++++.++.++|..+....|.| +||+ +++|+||++..|...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~p~viia~~gm~~-~G~~~~~l~~~~~~~~n~ii~--~gyq----~~gt~g~~l~~~~~~v 358 (431)
T 3iek_A 286 AGLEVVEHTEASKALNRAPGPMVVLAGSGMLA-GGRILHHLKHGLSDPRNALVF--VGYQ----PQGGLGAEIIARPPAV 358 (431)
T ss_dssp TTEEECCSHHHHHHHHHSCSSEEEEESCTTSS-SSHHHHHHHHHTTCTTCEEEE--CSCC----CTTSHHHHHHTCCSEE
T ss_pred CCeEEeCCHHHHHHHhcCCCCeEEEecCCCCC-CChHHHHHHHhcCCCCCeEEE--ECCC----CCCChHHHhhcCCcEE
Confidence 0001110 1245678888877775 578888878787777766654 7864 689999998776521
Q ss_pred ------------EEEe-ccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 678 ------------RYEV-PYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 678 ------------v~~v-pyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
+..+ .||+|||++||++|++.++ +|+ ++||+++++++|++.|.
T Consensus 359 ~~~g~~~~v~a~v~~~~~~saHad~~~l~~~~~~~~--~v~--lvHge~~~~~~l~~~l~ 414 (431)
T 3iek_A 359 RILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEP--RVV--LVHGEEEKLLALGKLLA 414 (431)
T ss_dssp EETTEEEECCSEEEECGGGCSSCCHHHHHHHHTTCS--EEE--EESSCHHHHHHHHHHHH
T ss_pred EECCEEEEEEEEEEEECCccccCCHHHHHHHHHhCC--eEE--EECCCHHHHHHHHHHHH
Confidence 3466 5999999999999999875 888 99999999999999885
No 4
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00 E-value=1.5e-34 Score=323.51 Aligned_cols=299 Identities=17% Similarity=0.294 Sum_probs=218.2
Q ss_pred CCccEEEeccCchhhhCChhhhc----CCceEEeCHHHHHHHHHHhC----C----------C-------CcceEEecCC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF----HHGKIYCSLITARLVNMKIG----I----------P-------WDRLQVLPLN 467 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~----~~~pIY~s~~T~~ll~~~lg----~----------~-------~~~~~~l~~g 467 (725)
.+|++|||||+|.||++||+.+. ..++||+++.|..++...+. . . ...+..++++
T Consensus 62 ~~Id~VllTH~H~DH~ggl~~l~~~~~~~~~iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (459)
T 2i7t_A 62 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFH 141 (459)
T ss_dssp GGCCEEECCCSSHHHHTTHHHHHHHSSCCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTT
T ss_pred ccCcEEEECCCChhhhhhhHHHHHhcCCCCCEEechHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhccEEeCCC
Confidence 36899999999999999999643 24799999999887654321 0 0 1256789999
Q ss_pred CEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhh-cccCCCCccEEEEecCCCCCCCCCCCHHHH
Q 004877 468 QKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASM-SVLQTCPIHTLILDTTYCNPLYDFPKQEAV 546 (725)
Q Consensus 468 e~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~-~~l~~~~~DlLIlEaTy~~~~~~~p~~~e~ 546 (725)
+++.+++++|+++++||++|+++|+|+. +|++|+||||+.+..+.... ..+...++|+||+|+||+++ .++++.+.
T Consensus 142 ~~~~~~gi~v~~~~~GH~~Gs~~~~i~~-~~~~il~sGD~~~~~~~~~~~~~~~~~~~D~Li~Esty~~~--~~~~~~~~ 218 (459)
T 2i7t_A 142 EVKEVAGIKFWCYHAGHVLGAAMFMIEI-AGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTH--IHEKREER 218 (459)
T ss_dssp CCEEETTEEEEEEECCSSTTCEEEEEEE-TTEEEEECCSCCCC-----CCCCCCSSCCSEEEEECTTTTC--CCCCHHHH
T ss_pred CEEEECCEEEEEEeCCCccCcEEEEEEE-CCcEEEEeCCCCCCCCcccCCCCcCCCCCeEEEECCCCCCC--CCCChHHH
Confidence 9999999999999999999999999996 67889999999988765432 11234689999999999985 46777777
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHc--------CCcEEEechHH----HHHHHcC-C-Cccc----
Q 004877 547 IQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVL--------RKKIYVNAAKF----RVLKCLD-F-SKED---- 608 (725)
Q Consensus 547 ~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l--------~~~I~V~~~~~----~I~~~lg-~-~~~~---- 608 (725)
.+.+.+.+.. ++..++.|+||+|++||.|.++.+...+ +.|||+++.++ ++|+.+. + ....
T Consensus 219 ~~~l~~~i~~-~~~~~g~vlip~fa~gr~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~ 297 (459)
T 2i7t_A 219 EARFCNTVHD-IVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQI 297 (459)
T ss_dssp HHHHHHHHHH-HHHTTCEEEEECCSSSSHHHHHHHHHHHHHHCGGGTTSCEEEC--------------------------
T ss_pred HHHHHHHHHH-HHHCCCEEEEEecchhHHHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 7888888874 5667899999999999998776665443 68999998654 3444432 1 1100
Q ss_pred ----------cccccc----CCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcchhhhc-
Q 004877 609 ----------IQWFTT----NEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQ- 673 (725)
Q Consensus 609 ----------~~~it~----~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr~~~~- 673 (725)
...+.. +.....|++++++++. ++++.++.+.|..+....|.| +||+ .++|+|+++..
T Consensus 298 ~~~~p~~~~~~~~~~~~~~~~~~~~~viia~~gm~~-~g~~~~~l~~~~~~~~~~ii~--~gy~----~~gt~g~~l~~~ 370 (459)
T 2i7t_A 298 NINNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQ-SGLSRELFESWCTDKRNGVII--AGYC----VEGTLAKHIMSE 370 (459)
T ss_dssp -------CCSEEECCCTTSSCCCSSEEEEESCTTCS-SHHHHHHHHHHTTCTTCEEEE--CSCC----CTTSHHHHHTTC
T ss_pred cccCCcCCCcceeeCCHHHhcCCCCeEEEEcCcccC-CCHHHHHHHHHcCCCCCeEEE--EecC----CCCChHHHHhhC
Confidence 000111 1235678888888775 578888888887777766654 7985 46788876543
Q ss_pred --------Cce-----EEEEeccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 674 --------GTI-----IRYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 674 --------G~~-----~v~~vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
|.. .++.++||+|||+.||.+||+.++|++|+ ++||++++..+|++.|.
T Consensus 371 ~~~~~~~~g~~~~~~~~v~~~~~S~Had~~~l~~~i~~~~p~~v~--~vHGe~~~~~~~~~~l~ 432 (459)
T 2i7t_A 371 PEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI--LVHGEQNEMARLKAALI 432 (459)
T ss_dssp CSEEECTTSCEEECCSEEEECCCSCCCCHHHHHHHHHHHCCSEEE--EESSCHHHHHHHHHHHH
T ss_pred CceeeeeCCcEEEEEEEEEEeeecccCCHHHHHHHHHhcCCCeEE--EeCCCHHHHHHHHHHHH
Confidence 321 24678999999999999999999999999 99999999999998774
No 5
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00 E-value=8.3e-33 Score=322.39 Aligned_cols=300 Identities=21% Similarity=0.254 Sum_probs=226.8
Q ss_pred CCccEEEeccCchhhhCChhhhc----CCceEEeCHHHHHHHHHHhC------------CCC---------cceEEecCC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF----HHGKIYCSLITARLVNMKIG------------IPW---------DRLQVLPLN 467 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~----~~~pIY~s~~T~~ll~~~lg------------~~~---------~~~~~l~~g 467 (725)
.+|++|||||+|.||++|++.++ ..++||+++.|..++...+. ..+ ..+..+.++
T Consensus 247 ~~Id~VllTH~H~DHiGglp~L~~~~~~~~pIy~t~~t~~ll~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 326 (651)
T 3af5_A 247 GLLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYG 326 (651)
T ss_dssp TCCCEEECSCSSHHHHTTHHHHHHTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTT
T ss_pred CCCCEEEECCCChHhhcCHHHHHhcCCCCceEEEcHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHhhhcEEEeCCC
Confidence 57899999999999999999654 26899999999887764321 111 136788999
Q ss_pred CEEEE-CCEEEEEEecccCCCCeEEEEeccCCe--EEEEecccCCChhhhhh-cccCCCCccEEEEecCCCCCCCCCCCH
Q 004877 468 QKTTI-AGIDVTCLEANHCPGSIIILFEPQNGK--AVLHTGDFRFSEEMASM-SVLQTCPIHTLILDTTYCNPLYDFPKQ 543 (725)
Q Consensus 468 e~~~I-ggv~Vt~~~agH~pGS~~flIe~~~Gk--~IlYTGD~~~~~~~~~~-~~l~~~~~DlLIlEaTy~~~~~~~p~~ 543 (725)
+++.+ ++++|+++++||++|+++|+++. ++. +|+||||+++..+.+.. +.+...++|+||+||||+++.+.|+++
T Consensus 327 ~~~~l~ggi~v~~~~~gH~~Gs~~~~i~~-~~~~~~ilftGD~~~~~~~ll~~~~~~~~~~DvLI~EsT~~~~~~~h~s~ 405 (651)
T 3af5_A 327 EVRDISPDIRLTLHNAGHILGSAIVHLHI-GNGLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPR 405 (651)
T ss_dssp CCEEEETTEEEEEEECSSSTTCEEEEEEE-TTTTTCEEECCSCCCSCCSSCCCCCCBCSSCSEEEEECTTCSTTCCCCCH
T ss_pred CEEEecCCEEEEEecCCCCcCcEEEEEEE-CCCceEEEEeCCCCCCcccccccccccCCCCCEEEECCCCCCCCCCCCCH
Confidence 99999 99999999999999999999986 444 69999999987663222 112346899999999999987778999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHcCC------cEEEechHHHHHHHc----CCCccc-----
Q 004877 544 EAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLRK------KIYVNAAKFRVLKCL----DFSKED----- 608 (725)
Q Consensus 544 ~e~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l~~------~I~V~~~~~~I~~~l----g~~~~~----- 608 (725)
.+..+.+.+.+.+ ++..++.|+||+|++||.|+++.+++.+++ |||+++..+++...+ ++....
T Consensus 406 ~~~~~~l~~~i~~-~l~~~g~vlIp~favgR~qell~~l~~~~~~~~l~~~I~~dg~a~~~~~~~~~~~~~l~~~~~~~~ 484 (651)
T 3af5_A 406 EEAEKRLIEVIHN-TIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAIHTAYPEYLSRRLREQI 484 (651)
T ss_dssp HHHHHHHHHHHHH-HHHTTCEEEEECCTTTHHHHHHHHHHHHHTTTCCCSCEEEESSHHHHHHHHHTCGGGSCHHHHHHT
T ss_pred HHHHHHHHHHHHH-HHhCCCEEEEeccCccHHHHHHHHHHHhhhhcCCCCcEEEechHHHHHHHHHHhHHhcCHHHHHHH
Confidence 8888888888874 566789999999999999988888877654 999999766543322 111100
Q ss_pred ----c--------ccccc--------CCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcc
Q 004877 609 ----I--------QWFTT--------NEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPG 668 (725)
Q Consensus 609 ----~--------~~it~--------~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~g 668 (725)
. ..+.. ...+..|++++++++. ++++.++.+++..+....|.| +||.. ++++|
T Consensus 485 ~~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~~vIia~~gm~~-gg~~~~~l~~~~~~~~~~vi~--sg~~~----~gt~g 557 (651)
T 3af5_A 485 FKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLV-GGPSVEYFKQLAPDPKNSIIF--VSYQA----EGTLG 557 (651)
T ss_dssp TTSSCCSTTCTTEEECCSHHHHHHHHHSCSCEEEEESCTTSS-SSHHHHHHHHHTTCTTCEEEE--CSCCC----TTCHH
T ss_pred HhccCCCccCCceEEcCCHHHHHHHhcCCCCEEEEECCCCCC-CCHHHHHHHHHhCCCCCEEEE--eCCCC----CCcHH
Confidence 0 01110 1145678888877764 467666667776666656654 78864 57777
Q ss_pred hhhhc-----------Cc--eE-----EEEec-cCCCCCHHHHHHHHHHcC--CCEEEEEeeCCChHHHHHHHHHh
Q 004877 669 RRWQQ-----------GT--II-----RYEVP-YSEHCSFTELKEFVKFVS--PEHIIPSVNNDGRDSANAMVSLL 723 (725)
Q Consensus 669 r~~~~-----------G~--~~-----v~~vp-yS~HAs~~EL~~fV~~lr--Pk~VIPtv~hg~~~~~~~m~~~l 723 (725)
++++. |. .+ ++.++ ||+|||++||++|++.++ |++|| ++||++..+.+|++.+
T Consensus 558 r~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~g~SgHad~~eL~~~i~~~~~~P~~vi--~vHGe~~~~~~la~~~ 631 (651)
T 3af5_A 558 RQVQSGIREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERII--TVHGEPQKCLDLATSI 631 (651)
T ss_dssp HHHHHTCSEEEEECGGGCEEEEECCSEEEECGGGCSSCCHHHHHHHHHHCBSCCSEEE--EESSCHHHHHHHHHHH
T ss_pred HHHHhccceeeehhcCCCceEEEeEEEEEEcCcccCcCCHHHHHHHHHHhhcCCCEEE--EEcCCHHHHHHHHHHH
Confidence 77543 33 11 35688 999999999999999999 99999 8899999999999876
No 6
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=100.00 E-value=5.5e-32 Score=314.88 Aligned_cols=301 Identities=19% Similarity=0.277 Sum_probs=219.2
Q ss_pred CCccEEEeccCchhhhCChhhhc---CCceEEeCHHHHHHHHHHhC------------CCC---------cceEEecCCC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIG------------IPW---------DRLQVLPLNQ 468 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~---~~~pIY~s~~T~~ll~~~lg------------~~~---------~~~~~l~~ge 468 (725)
.+|++|||||+|.||++|++.++ ..++||+++.|..++...+. ..+ ..+..+.+++
T Consensus 236 ~~Id~VllTH~H~DHiGgl~~L~~~~~~~~Iy~t~~t~~ll~~~l~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~g~ 315 (640)
T 2xr1_A 236 NQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEE 315 (640)
T ss_dssp GGCCEEECCSSCHHHHTTHHHHHHTTCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTC
T ss_pred ccCcEEEECCCChhhhccHHHHHhcCCCCeEEECHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHhceEEeCCCC
Confidence 47899999999999999999654 35899999999887654321 111 1367789999
Q ss_pred EEEE-CCEEEEEEecccCCCCeEEEEeccCCe--EEEEecccCCChhhhhhcc-cCCCCccEEEEecCCCCCCCCCCCHH
Q 004877 469 KTTI-AGIDVTCLEANHCPGSIIILFEPQNGK--AVLHTGDFRFSEEMASMSV-LQTCPIHTLILDTTYCNPLYDFPKQE 544 (725)
Q Consensus 469 ~~~I-ggv~Vt~~~agH~pGS~~flIe~~~Gk--~IlYTGD~~~~~~~~~~~~-l~~~~~DlLIlEaTy~~~~~~~p~~~ 544 (725)
++.+ ++++|+++++||++|+++|+++. .+. +|+||||+++....+.... ....++|+||+|+||+++.+.|+++.
T Consensus 316 ~i~l~gg~~v~~~~~GH~~Gs~~~~i~~-~~~~~~ilftGD~~~~~~~ll~~~~~~~~~~DvLi~EsT~g~~~~~h~s~~ 394 (640)
T 2xr1_A 316 VTDIAPDIKLTFHNAGHILGSAISHFHI-GDGLHNVVFTGDYKYEKTRLFDPAVNKFPRVETVISEATYGNANAFQPALK 394 (640)
T ss_dssp CEEEETTEEEEEEECSSSTTCEEEEEEE-TTTTEEEEECCSCCSSCCSSCCCCCCBCSCCSEEEEECTTCSTTCCCCCHH
T ss_pred EEEecCCEEEEEEcCCCCcCcEEEEEEE-CCceEEEEEECCCCCCCccccccccccCCCCcEEEECCCCCCCccCCCCHH
Confidence 9999 99999999999999999999996 444 7999999998765322211 23468999999999999877799988
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHcC-------CcEEEechHHHH---HHHc-CCCccc-----
Q 004877 545 AVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLR-------KKIYVNAAKFRV---LKCL-DFSKED----- 608 (725)
Q Consensus 545 e~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l~-------~~I~V~~~~~~I---~~~l-g~~~~~----- 608 (725)
+..+.+.+.+.. .+..++.++||+|++||.|+++.+++.++ .|||+++..++. +..+ ++....
T Consensus 395 ~~~~~l~~~i~~-~~~~~g~vlIp~favGR~qell~~l~~~~~~~~~~~~~V~~dg~a~~~~~~~~~~~~~l~~~~~~~~ 473 (640)
T 2xr1_A 395 DAEKHLQMVVKN-TIERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNNDLRKLI 473 (640)
T ss_dssp HHHHHHHHHC---------CEEEECCTTTHHHHHHHHHHHHHHHTSSCCCCEEEESSHHHHHHHHHHCGGGSCHHHHHHC
T ss_pred HHHHHHHHHHHH-HHhcCCeEEEEecccchHHHHHHHHHHHHHhCCCCCCcEEEEhHHHHHHHHHHHhHhhhcHHHHHHH
Confidence 888888888874 55678899999999999998888877665 599999976543 3332 211110
Q ss_pred ------------cccccc-------CC-CCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcc
Q 004877 609 ------------IQWFTT-------NE-HESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPG 668 (725)
Q Consensus 609 ------------~~~it~-------~~-~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~g 668 (725)
...+.. .. .+..|++++++++. ++++.++.+++..+....|.| +||.. ++++|
T Consensus 474 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~vIiat~gm~~-gg~~~~~l~~~~~~~~~~vi~--sg~~~----~gt~g 546 (640)
T 2xr1_A 474 FQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMN-GGPVMEYFKAFAEDPRNTLVF--VGYQA----DGTIG 546 (640)
T ss_dssp ------CTTCTTEEEEC-CHHHHHC----CCCEEEESCTTSS-SSHHHHHHHHHSSCTTCEEEE--CSCCC----TTCHH
T ss_pred HhcccCcccCCceEEeCCHHHHHHHhcCCCCeEEEeCCCccC-CChHHHHHHHhhCCCCCEEEE--ecCCC----CCCHH
Confidence 001110 11 35678888877764 467666666777666666654 78764 56777
Q ss_pred hhhhc-----------Cc--e-----EEEEec-cCCCCCHHHHHHHHHHcC--CCEEEEEeeCCChHHHHHHHHHhh
Q 004877 669 RRWQQ-----------GT--I-----IRYEVP-YSEHCSFTELKEFVKFVS--PEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 669 r~~~~-----------G~--~-----~v~~vp-yS~HAs~~EL~~fV~~lr--Pk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
+++.. |. . .++.++ ||+|||++||++|++.++ |++|| ++||++..+.+|++.+.
T Consensus 547 r~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~g~SgHad~~eL~~~i~~~~~~P~~vi--~vHGe~~~~~~~a~~~~ 621 (640)
T 2xr1_A 547 RRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVDGFSGHSDRRQLMEYVKRMQPRPERVF--TEHGDEKACVDLASSVY 621 (640)
T ss_dssp HHHHTTCCC-----------CCCCCSEEEECCCCSCSCCHHHHHHHHHTCBSCCSEEE--EESSCHHHHHHHHHHHH
T ss_pred HHHhhccceeeeeccCCCceEEeeeEEEEEEccccccCCHHHHHHHHHHhccCCCEEE--EECCCHHHHHHHHHHHH
Confidence 76543 32 1 135688 999999999999999999 99999 88999999999998873
No 7
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=7.6e-32 Score=313.53 Aligned_cols=300 Identities=20% Similarity=0.285 Sum_probs=223.7
Q ss_pred CCccEEEeccCchhhhCChhhhc---CCceEEeCHHHHHHHHHHhC------------CCC---------cceEEecCCC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIG------------IPW---------DRLQVLPLNQ 468 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~---~~~pIY~s~~T~~ll~~~lg------------~~~---------~~~~~l~~ge 468 (725)
.+|++|||||+|.||++||+.++ ..++||+++.|..++...+. ..+ ..+..+.+++
T Consensus 233 ~~Id~VlLTH~H~DHiGglp~L~~~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~ 312 (636)
T 2ycb_A 233 DSLDAVIITHAHLDHSGFLPYLYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGE 312 (636)
T ss_dssp TTCCEEECSSSSHHHHTTHHHHHHTTCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHTEEECCTTC
T ss_pred ccCcEEEECCCChHHhcCHHHHHhcCCCCeEEEcchHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHhceEEeCCCC
Confidence 47899999999999999999654 35899999999987764321 111 1357889999
Q ss_pred EEEE-CCEEEEEEecccCCCCeEEEEeccCCe--EEEEecccCCChhhhhh-cccCCCCccEEEEecCCCCCCCCCCCHH
Q 004877 469 KTTI-AGIDVTCLEANHCPGSIIILFEPQNGK--AVLHTGDFRFSEEMASM-SVLQTCPIHTLILDTTYCNPLYDFPKQE 544 (725)
Q Consensus 469 ~~~I-ggv~Vt~~~agH~pGS~~flIe~~~Gk--~IlYTGD~~~~~~~~~~-~~l~~~~~DlLIlEaTy~~~~~~~p~~~ 544 (725)
++.+ ++++|+++++||++|+++|+|+.. +. +|+||||+++....+.. +.....++|+||+||||+++.+.|+++.
T Consensus 313 ~~~l~ggi~v~~~~~gH~~Gs~~~~i~~~-~~~~~ilftGD~~~~~~~ll~~~~~~~~~~D~LI~EsT~~~~~~~h~s~~ 391 (636)
T 2ycb_A 313 VTDIAPDIRLTLHNAGHILGSAMAHLHIG-DGQHNMVYTGDFKYEQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRN 391 (636)
T ss_dssp CEEEETTEEEEEEECCSSTTCEEEEEEET-TTTTCEEECCSCCSSCCSSSCCCCCCCSCCSEEEEECTTCSGGGCCCCHH
T ss_pred EEEecCCeEEEEeCCCCCCCcEEEEEEEC-CCeEEEEEECCCCCCcccccCCcccCCCCCeEEEECCCCCCCCCCCCCHH
Confidence 9999 999999999999999999999963 44 69999999987653222 1123468999999999998766689888
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHcC-------CcEEEechHHHH---HHHc-CCCccc-----
Q 004877 545 AVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLR-------KKIYVNAAKFRV---LKCL-DFSKED----- 608 (725)
Q Consensus 545 e~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l~-------~~I~V~~~~~~I---~~~l-g~~~~~----- 608 (725)
+..+.+.+.+.. ++..++.++||+|++||.|.++.++..++ .|||+++..+++ +..+ ++....
T Consensus 392 ~~~~~l~~~i~~-~~~~~g~vlIp~fa~GR~qell~~l~~~~~~~~~~~~~V~~dg~~~~~~~~~~~~~~~l~~~~~~~~ 470 (636)
T 2ycb_A 392 RAEKELVKTIYS-TLRRGGKILIPVFAVGRAQELMIVLEEYIRTGIIDEVPVYIDGMIWEANAIHTARPEYLSKDLRDQI 470 (636)
T ss_dssp HHHHHHHHHHHH-HHHHTCCEEEECCTTTHHHHHHHHHHHHHHTTSSCCCCEEEEHHHHHHHHHHHHSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHcCCEEEEEECCCcHHHHHHHHHHHHHHhCCCCCCeEEEehHHHHHHHHHHHhHHhhCHHHHHHH
Confidence 888888888874 44567889999999999998887776554 599999976543 3322 221110
Q ss_pred ----cccc--------c-------cCCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcch
Q 004877 609 ----IQWF--------T-------TNEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGR 669 (725)
Q Consensus 609 ----~~~i--------t-------~~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr 669 (725)
.+.| . .+..+..|++++++++. ++++.++.+++..+....|.| +||.. ++++|+
T Consensus 471 ~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~vIiat~gm~~-gg~~~~~l~~~~~~~~~~vi~--sg~~~----~Gt~gr 543 (636)
T 2ycb_A 471 FHMGHNPFISDIFHKVNGMDERREIVEGEPSIILSTSGMLT-GGNSLEYFKWLCEDPDNSLVF--VGYQA----EGSLGR 543 (636)
T ss_dssp HTTCCCGGGCTTEEEECCHHHHHHHHHSSSCEEEESCSSSS-SHHHHHHHHHHTTCTTSEEEE--CSCCC----SSSHHH
T ss_pred HhccCCcccCCceEEeCCHHHHHHhccCCCEEEEecCCccC-CChHHHHHHHHhCCCCCEEEE--ecCCC----CCCHHH
Confidence 0001 1 00135678888877764 456666666676666666654 78764 577777
Q ss_pred hhhc-----------Cc--eE-----EEEec-cCCCCCHHHHHHHHHHcC--CCEEEEEeeCCChHHHHHHHHHh
Q 004877 670 RWQQ-----------GT--II-----RYEVP-YSEHCSFTELKEFVKFVS--PEHIIPSVNNDGRDSANAMVSLL 723 (725)
Q Consensus 670 ~~~~-----------G~--~~-----v~~vp-yS~HAs~~EL~~fV~~lr--Pk~VIPtv~hg~~~~~~~m~~~l 723 (725)
+++. |. .+ ++.++ ||+|||++||++|++.++ |++|| ++||+.....+|++.+
T Consensus 544 ~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~~~SgHad~~eL~~~i~~~~~~Pk~vi--~vHGe~~~~~~~a~~~ 616 (636)
T 2ycb_A 544 RIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEGFSGHSDRRQLMEYVKRISPKPEKIL--LCHGDNYKTLDLASSI 616 (636)
T ss_dssp HHHTTCCEEEEECSSSCEEEEECCSEEEECCSCCSSCCHHHHHHHHHSCSSCCSEEE--EESSCHHHHHHHHHHH
T ss_pred HhhcCCceeeeeccCCceeEEEeEEEEEEECCcceeCCHHHHHHHHHHhccCCCEEE--EECCCHHHHHHHHHHH
Confidence 6543 33 21 35688 999999999999999999 99999 8899999999999876
No 8
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=99.97 E-value=7.8e-31 Score=300.52 Aligned_cols=300 Identities=16% Similarity=0.199 Sum_probs=217.9
Q ss_pred CCccEEEeccCchhhhCChhhhcC--CceEEeCHHHHHHHHHHh---CC-CCcceEEecCCCEEEECCEEEEEEeccc-C
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSFH--HGKIYCSLITARLVNMKI---GI-PWDRLQVLPLNQKTTIAGIDVTCLEANH-C 485 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~~--~~pIY~s~~T~~ll~~~l---g~-~~~~~~~l~~ge~~~Iggv~Vt~~~agH-~ 485 (725)
.++++|||||+|.||++|++.++. .++||+++.|..++...+ +. ....++.+.+++++.+++++|++++++| +
T Consensus 65 ~~Id~I~lTH~H~DHiggl~~l~~~~~~pIy~t~~t~~ll~~~l~~~~~~~~~~~~~v~~g~~~~ig~~~v~~~~~~H~~ 144 (555)
T 3zq4_A 65 DKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLNIIGEDDIVKFRKTAVSFFRTTHSI 144 (555)
T ss_dssp TTEEEEEESCCCHHHHTTHHHHHTTCCCCEEECHHHHHHHHHHHHHHSTTTTCCEEECCTTCCEEETTEEEEEEEEBCSS
T ss_pred cCCCEEEECCCchhhhCCHHHHHHhcCceEEECHHHHHHHHHHHHHcCccCCCceEEeCCCCEEEECCEEEEEEeCCCCC
Confidence 579999999999999999997653 589999999999888654 22 2235788999999999999999999998 8
Q ss_pred CCCeEEEEeccCCeEEEEecccCCChhhhhh-------cccCCCCccEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 004877 486 PGSIIILFEPQNGKAVLHTGDFRFSEEMASM-------SVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIEAIQAES 558 (725)
Q Consensus 486 pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~-------~~l~~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l~e~I~~~~ 558 (725)
+|+++|+|+. .+.+++||||+.+....... ..+...++|+||+||||+++....++.++..+.+.++++.
T Consensus 145 pgs~~~~i~~-~~~~il~tGD~~~~~~~~~g~~d~~~l~~l~~~~~d~Li~esT~~~~~~~~~se~~v~~~i~~~~~~-- 221 (555)
T 3zq4_A 145 PDSYGIVVKT-PPGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIFRK-- 221 (555)
T ss_dssp SSEEEEEEEE-TTEEEEECCSCBCCSSCSSSCCCHHHHHHHHHTCEEEEEEECTTTTCCSCCCCHHHHHHHHHHHHHH--
T ss_pred cCcEEEEEEE-CCcEEEEeCCCCCCCCcCcCccCHHHHHHhcccCCcEEEecCcccCCCCCCCCHHHHHHHHHHHHHh--
Confidence 9999999997 56689999999986542211 0011258999999999999766677877777778777763
Q ss_pred cCCCcEEEEeccc--ccHHHHHHHHHHHcCCcEEEechHH----HHHHHcCCCcc-cccccccC-----CCCCcEEEEeC
Q 004877 559 FNPKTLFLIGSYT--IGKERLFLEVARVLRKKIYVNAAKF----RVLKCLDFSKE-DIQWFTTN-----EHESHIHVMPM 626 (725)
Q Consensus 559 ~~~~~~vlIp~~s--lGreqll~eLa~~l~~~I~V~~~~~----~I~~~lg~~~~-~~~~it~~-----~~e~~v~vvp~ 626 (725)
.++.+++++|+ +||.|.++++++.++++|++++..+ ++++.+|+... ...++..+ +.+.-++++++
T Consensus 222 --~~grvii~~fasnv~R~q~il~~a~~~gr~v~v~grs~~~~~~~~~~~g~l~~p~~~~v~~~~~~~~~~~~~vii~tg 299 (555)
T 3zq4_A 222 --VDGRIIFATFASNIHRLQQVIEAAVQNGRKVAVFGRSMESAIEIGQTLGYINCPKNTFIEHNEINRMPANKVTILCTG 299 (555)
T ss_dssp --CCSCEEEECCTTCHHHHHHHHHHHHTTTCEEEEESHHHHHHHHHHHGGGSCCCCGGGEECGGGTTTSCGGGEEEEECC
T ss_pred --CCCEEEEEEChhHHHHHHHHHHHHHHHCCEEEEeCHHHHHHHHHHHHcCCccCCcccEeCHHHHhhCCCCCEEEEeCC
Confidence 36789999999 9999999999999999999999654 45666664321 11122211 12234556666
Q ss_pred CCccchHHHHHHHhh----hcCCCCcEEEEeeccccccCCCCCCcch----hhhcCceEEE----EeccCCCCCHHHHHH
Q 004877 627 WTLASFKRLKHMSNQ----YAGRFSLIVAFSPTGWTFSKGKKKSPGR----RWQQGTIIRY----EVPYSEHCSFTELKE 694 (725)
Q Consensus 627 ~~~~s~~rl~~l~~~----~~~~~~~iI~~~~TGw~~~~g~e~t~gr----~~~~G~~~v~----~vpyS~HAs~~EL~~ 694 (725)
+.......+.+++.. +.-+....|. ++||.. +|+++..++ .++.|..+++ .+++|+||+++||+.
T Consensus 300 sqGe~~~~L~r~a~~~~~~~~~~~~d~vi--~s~~~i-pGne~~~~~~~~~l~~~g~~v~~~~~~~~h~SgHa~~~eL~~ 376 (555)
T 3zq4_A 300 SQGEPMAALSRIANGTHRQISINPGDTVV--FSSSPI-PGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQEEQKL 376 (555)
T ss_dssp TTCCTTSHHHHHHSSCCSSCCCCTTCEEE--ECSCCC-TTCHHHHHHHHHHHHHTTCEEECSSSSCCCCCSSCCHHHHHH
T ss_pred CCchHHHHHHHHhcCCCCccccCCCCEEE--EECCCC-CCcHHHHHHHHHHHHHCCCEEEecCCcceEEeCCCCHHHHHH
Confidence 544433344444432 1111223454 367753 444433333 2446655544 689999999999999
Q ss_pred HHHHcCCCEEEEEeeCCChHHHHHHHHH
Q 004877 695 FVKFVSPEHIIPSVNNDGRDSANAMVSL 722 (725)
Q Consensus 695 fV~~lrPk~VIPtv~hg~~~~~~~m~~~ 722 (725)
|++.++|+++| .+||+.....++++.
T Consensus 377 ~~~~~~Pk~~i--pvHGe~~~~~~~~~~ 402 (555)
T 3zq4_A 377 MLRLIKPKFFM--PIHGEYRMQKMHVKL 402 (555)
T ss_dssp HHHHSCEEEEE--EESBCHHHHHHHHHH
T ss_pred HHHHhCCCEEE--EcCCCHHHHHHHHHH
Confidence 99999999999 789998888777764
No 9
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.97 E-value=8.6e-29 Score=284.05 Aligned_cols=302 Identities=18% Similarity=0.217 Sum_probs=207.3
Q ss_pred CCccEEEeccCchhhhCChhhhcC-------CceEEeCHHHHHHHHHHh---CCC--CcceEEecCCCEEEECC-EEEEE
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSFH-------HGKIYCSLITARLVNMKI---GIP--WDRLQVLPLNQKTTIAG-IDVTC 479 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~~-------~~pIY~s~~T~~ll~~~l---g~~--~~~~~~l~~ge~~~Igg-v~Vt~ 479 (725)
.++++|||||+|.||++||+.++. .++||+++.|..+++..+ +.+ ...++.+.+++++.+++ ++|++
T Consensus 73 ~~Id~I~iTH~H~DHiggl~~L~~~~~~~~~~~pIy~~~~t~~~l~~~l~~~~~~~~~~~~~~v~~g~~~~lg~~~~v~~ 152 (562)
T 3bk2_A 73 HKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDL 152 (562)
T ss_dssp GGEEEEECCCCCHHHHTTHHHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEE
T ss_pred ccCcEEEECCCChHHhCCHHHHHHhhccccCCceEEeCHHHHHHHHHHHHHcCCCcCCceEEEECCCCEEEeCCCEEEEE
Confidence 478999999999999999996431 689999999999887654 222 23577899999999998 99999
Q ss_pred Eeccc-CCCCeEEEEeccCCeEEEEecccCCChhhhhh--cc---cC---CCCccEEEEecCCCCCCCCCCCHHHHHHHH
Q 004877 480 LEANH-CPGSIIILFEPQNGKAVLHTGDFRFSEEMASM--SV---LQ---TCPIHTLILDTTYCNPLYDFPKQEAVIQFV 550 (725)
Q Consensus 480 ~~agH-~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~--~~---l~---~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l 550 (725)
++++| ++|+++|+|+. .+.+|+||||+.+....... .. +. ..++|+||+|+||+......++.....+.+
T Consensus 153 ~~~~H~~~gs~~~~i~~-~~~~il~tGD~~~~~~~~~g~~~d~~~l~~~~~~~~d~Li~EsT~~~~~g~~~~e~~v~~~l 231 (562)
T 3bk2_A 153 FRMTHSIPDNSGVVIRT-PIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKEL 231 (562)
T ss_dssp EECCCSSSSCEEEEEEE-TTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCSCCCCHHHHHHHH
T ss_pred EECCCCCcccEEEEEEE-CCeEEEEcCCCCCCCCCCCCCcccHHHHHHhhccCCCEEEecccCCCCCCCCChHHHHHHHH
Confidence 99999 89999999986 56689999999875432210 00 00 147999999999986444456665666667
Q ss_pred HHHHHHhhcCCCcEEEEeccc--ccHHHHHHHHHHHcCCcEEEechH-H---HHHHHcCCCccccccccc---C-CCCCc
Q 004877 551 IEAIQAESFNPKTLFLIGSYT--IGKERLFLEVARVLRKKIYVNAAK-F---RVLKCLDFSKEDIQWFTT---N-EHESH 620 (725)
Q Consensus 551 ~e~I~~~~~~~~~~vlIp~~s--lGreqll~eLa~~l~~~I~V~~~~-~---~I~~~lg~~~~~~~~it~---~-~~e~~ 620 (725)
.++++. .++.+++++|+ ++|.|.++++++.++++|++.+.. . ++++.+++......++.. + -....
T Consensus 232 ~~~~~~----~~grvii~~fas~~~r~q~il~~a~~~~r~V~v~g~s~~~~~~~~~~~g~l~~~~~~i~~~~~~~~~~~~ 307 (562)
T 3bk2_A 232 DRVIGR----APGRVFVTTFASHIHRIQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQ 307 (562)
T ss_dssp HHHHHH----CSSCEEEECCTTCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHHHHHTTSCCCSSCCBCTGGGTTSCGGG
T ss_pred HHHHHh----CCCEEEEEEccccchHHHHHHHHHHHhCCEEEEEChHHHHHHHHHHhcCcccCCCCccCHHHHhcCCCCC
Confidence 676653 35788999999 899999999999999999985543 2 455666654321111211 1 12234
Q ss_pred -EEEEeCCCccchHHHHHHHh----hhcCCCCcEEEEeeccccccCCCCCC----cchhhhcCceEE----EEeccCCCC
Q 004877 621 -IHVMPMWTLASFKRLKHMSN----QYAGRFSLIVAFSPTGWTFSKGKKKS----PGRRWQQGTIIR----YEVPYSEHC 687 (725)
Q Consensus 621 -v~vvp~~~~~s~~rl~~l~~----~~~~~~~~iI~~~~TGw~~~~g~e~t----~gr~~~~G~~~v----~~vpyS~HA 687 (725)
|+++++.+......+..++. .+..+....|.| +||.. +|.++. .++.++.|..++ ..++||+||
T Consensus 308 ~vi~~tg~~ge~~~~l~ria~~~h~~~~~~~~~~vi~--s~~~~-~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa 384 (562)
T 3bk2_A 308 VLILATGSQGQPMSVLHRLAFEGHAKMAIKPGDTVIL--SSSPI-PGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHA 384 (562)
T ss_dssp EEEEECCTTSCSHHHHHHHHTTCCSSCCCCTTCEEEE--CSCCC-TTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSC
T ss_pred EEEEEcCCCchhHHHHHhhhhcccccccCCCCCEEEE--ECCCC-CCCeEehhhhcCceeeCCCEEEEccCCceEEeCCC
Confidence 55565543222222223321 122233444543 67654 222211 122334565433 357899999
Q ss_pred CHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 688 SFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 688 s~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
|++||++|++.++|++|| .+||+.....++++.+.
T Consensus 385 ~~~eL~~~i~~~~Pk~vi--pvHGe~~~~~~~~~~~~ 419 (562)
T 3bk2_A 385 SQEELKLILNLTTPRFFL--PWHGEVRHQMNFKWLAE 419 (562)
T ss_dssp CHHHHHHHHHHHCCSEEE--EESBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEE--EEcCCHHHHHHHHHHHH
Confidence 999999999999999999 78899998888877653
No 10
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.95 E-value=4.7e-26 Score=251.92 Aligned_cols=279 Identities=12% Similarity=0.099 Sum_probs=181.9
Q ss_pred CCCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCC-------------CCcceEEecCCCEEEECCEEEE
Q 004877 412 RGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGI-------------PWDRLQVLPLNQKTTIAGIDVT 478 (725)
Q Consensus 412 ~~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~-------------~~~~~~~l~~ge~~~Iggv~Vt 478 (725)
..++++|||||+|.||++|++.++..++||+++.|..++...... ....++.+..++++.+++++|+
T Consensus 82 ~~~i~~v~lTH~H~DHiggl~~l~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~ 161 (429)
T 2az4_A 82 DYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVE 161 (429)
T ss_dssp CCSEEEEECSCSCHHHHTTGGGBCTTSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEETTEEEE
T ss_pred cccCCEEEECCchHHHhCcHhHhcCCCCEEECHHHHHHHHHHHHhCccccccccccccccceEEEeCCCCeEEECCEEEE
Confidence 357899999999999999999877778999999999988754321 1235678899999999999999
Q ss_pred EEeccc-CCCCeEEEEeccCCeEEEEecccCCChhhhh----hcccCCCCccEEEEecCCCCC--------CCCCCCHHH
Q 004877 479 CLEANH-CPGSIIILFEPQNGKAVLHTGDFRFSEEMAS----MSVLQTCPIHTLILDTTYCNP--------LYDFPKQEA 545 (725)
Q Consensus 479 ~~~agH-~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~----~~~l~~~~~DlLIlEaTy~~~--------~~~~p~~~e 545 (725)
+++++| ++|+++|+|+. .+++++||||+.+...... ...+ ..++|+||+||||+.. ...+++.++
T Consensus 162 ~~~~~H~~~gs~~~~i~~-~~~~i~~tGD~~~~~~~~~~~~~~~~~-~~~~d~Li~Est~~~~~~~~~~~~~~~~~s~~~ 239 (429)
T 2az4_A 162 IVPVDHDAYGASALLIRT-PDHFITYTGDLRLHGHNREETLAFCEK-AKHTELLMMEGVSISFPEREPDPAQIAVVSEED 239 (429)
T ss_dssp EEECCCSSTTCEEEEEEE-TTEEEEECCSCCSSSTTHHHHHHHHHH-HTTCSEEEEECCGGGSCCCCCCTTBCCCCSHHH
T ss_pred EEECCCCChhhEEEEEEe-CCcEEEECCCcccCCCchHHHHHHHHh-ccCCCEEEECCCCcCcccccccccCCCCCCHHH
Confidence 999999 89999999986 5678999999987543210 0001 2489999999999761 112667777
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHcCCcEEEechHHHH-HHHcCCCcccc-------------cc
Q 004877 546 VIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRV-LKCLDFSKEDI-------------QW 611 (725)
Q Consensus 546 ~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l~~~I~V~~~~~~I-~~~lg~~~~~~-------------~~ 611 (725)
+.+.+.++++. ..+.++++++..+....++++++..++||++++..+.. .+.+....... ..
T Consensus 240 ~~~~i~~~~~~----~~~rlil~h~~~~~~~r~~~~a~~~gr~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (429)
T 2az4_A 240 LVQHLVRLELE----NPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKIPELNPALE 315 (429)
T ss_dssp HHHHHHHHHHT----CSSSCEEEEECTTCHHHHHHHHHHCSSEEEEEHHHHHHHHHHHCCCCEEECSSSSCCTTSCGGGB
T ss_pred HHHHHHHHHHh----CCCcEEEEEeccchHHHHHHHHHHhCCEEEEEChhHHHHHhhccccCeeEecccccccccCccce
Confidence 77777777763 23444454444333333445588999999999998733 33322111000 01
Q ss_pred cccC---CCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCC-----CcchhhhcCceEEEEecc
Q 004877 612 FTTN---EHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKK-----SPGRRWQQGTIIRYEVPY 683 (725)
Q Consensus 612 it~~---~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~-----t~gr~~~~G~~~v~~vpy 683 (725)
++.+ ......+++ +. ++. .++... + .|.| ++|.. ++.+. ..+...+.|. .++.+++
T Consensus 316 ~~~~~~~~~~~~~ii~-~~-----~~~----~~l~~~-~-~vi~--s~~~~-~g~~~~~~~~~~~~~~~~~~-~v~~i~~ 379 (429)
T 2az4_A 316 IPYDTLLKDKTDYLWQ-VV-----NQF----DNLQEG-S-LYIH--SDAQP-LGDFDPQYRVFLDLLAKKDI-TFVRLAC 379 (429)
T ss_dssp CCHHHHHHCSSSEEEE-CC-----SCG----GGSCTT-C-EEEE--ESCSS-CSTTSHHHHHHHHHHHHTTC-EEEECCC
T ss_pred ecHHHHhhCCCcEEEE-ec-----CcH----HhhCCC-C-EEEE--eCCCC-CcccchHHHHHHHHHHhCCC-EEEEEee
Confidence 1111 112233344 21 111 123332 3 3434 45432 22221 1112234454 3457899
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeeCCChH
Q 004877 684 SEHCSFTELKEFVKFVSPEHIIPSVNNDGRD 714 (725)
Q Consensus 684 S~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~ 714 (725)
|+|||++||++|++.++|++||| +||+..
T Consensus 380 SgHa~~~eL~~~~~~~~Pk~~ip--vHGe~~ 408 (429)
T 2az4_A 380 SGHAIPEDLDKIIALIEPQVLVP--IHTLKP 408 (429)
T ss_dssp CSSCCHHHHHHHHHHHCCSEEEE--ESCSCG
T ss_pred cCCCCHHHHHHHHHhhCCCEEEE--CCCCch
Confidence 99999999999999999999995 566543
No 11
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=99.90 E-value=7.3e-23 Score=240.63 Aligned_cols=245 Identities=11% Similarity=0.131 Sum_probs=173.2
Q ss_pred CccEEEeccCchhhhCChhhhc--------CCceEEeCHHHHHHHHHHh-------CC--CC--------------cceE
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSF--------HHGKIYCSLITARLVNMKI-------GI--PW--------------DRLQ 462 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~--------~~~pIY~s~~T~~ll~~~l-------g~--~~--------------~~~~ 462 (725)
+|++|||||+|.||++||+.++ ..++||+++.|..++...+ +. ++ ..++
T Consensus 53 ~IdaVlLTH~H~DHiGgLp~L~~~~~~g~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~ 132 (717)
T 2i7x_A 53 EIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIV 132 (717)
T ss_dssp GCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSE
T ss_pred CCCEEEECCCChHHHCCHHHHHHhhhhcccCCceEEecchhHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceE
Confidence 6899999999999999999643 2589999999988765322 11 11 1467
Q ss_pred EecCCCEEEE----CCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhh-cc---------cCCCCccEEE
Q 004877 463 VLPLNQKTTI----AGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASM-SV---------LQTCPIHTLI 528 (725)
Q Consensus 463 ~l~~ge~~~I----ggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~-~~---------l~~~~~DlLI 528 (725)
.+.+++++.+ ++++|+++++||++|+++|+|+. .+.+|+||||++........ +. ....++|+||
T Consensus 133 ~l~~ge~i~l~~~~ggi~V~~~~aGHs~Gs~~~~I~~-~~~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI 211 (717)
T 2i7x_A 133 PLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCIST-YSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAII 211 (717)
T ss_dssp EECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEEC-SSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEE
T ss_pred EecCCCEEEEeecCCCEEEEEECCCCCCCcEEEEEEe-CCCEEEEECCCCCCcccccCccccccccchhHHhccCCcEEE
Confidence 8999999999 89999999999999999999996 56689999999876542211 10 1235899999
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHc-----------CCcEEEechHH-
Q 004877 529 LDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVL-----------RKKIYVNAAKF- 596 (725)
Q Consensus 529 lEaTy~~~~~~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l-----------~~~I~V~~~~~- 596 (725)
+|+||+.. .||.++ .+..+.+.+.. ++..++.|+||+|+.||.|.++.++..+ ++|||+++..+
T Consensus 212 ~EsTy~~~--~h~~~~-~~~~l~~~i~~-~l~~~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~ 287 (717)
T 2i7x_A 212 TTLDRFGS--SQPFKK-RSKIFKDTLKK-GLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARG 287 (717)
T ss_dssp ECCSCCCC--SSCHHH-HHHHHHHHHHH-HTSTTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTT
T ss_pred EcCCCCCC--CCCCHH-HHHHHHHHHHH-HHhCCCeEEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHH
Confidence 99999885 466654 45577777764 6778899999999999998777666433 48999998765
Q ss_pred ---HHHHHc-CCCcc--------------cc--ccc---cc---CC-CCCcEEEEeCCCccchHHHHHHHhhhcCCCCcE
Q 004877 597 ---RVLKCL-DFSKE--------------DI--QWF---TT---NE-HESHIHVMPMWTLASFKRLKHMSNQYAGRFSLI 649 (725)
Q Consensus 597 ---~I~~~l-g~~~~--------------~~--~~i---t~---~~-~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~i 649 (725)
++++.+ ++... .. ..+ .. +. ....|+++++ .++++.++.++|+.+....
T Consensus 288 ~~~~i~~~~~e~l~~~~~~~~~~~~~~~pf~~~~~l~~~~~~~l~~~~~p~VI~aSG----~gG~~~~~L~~~a~~~~n~ 363 (717)
T 2i7x_A 288 RTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFVSE----VGALINEVIIKVGNSEKTT 363 (717)
T ss_dssp HHHHHHHTCGGGSCHHHHHHHHSSSSCCTTCCTTTEEECCGGGGGGCCSCEEEEEES----CHHHHHHHHHHHSSCTTEE
T ss_pred HHHHHHHHHHHHhChHHHHHHhcccccCCccccccCccCCHHHHhhCCCCEEEEECC----CCHHHHHHHHHHcCCCcCE
Confidence 455544 32210 00 100 11 11 2344555555 3578887777888777777
Q ss_pred EEEeeccccccCCCCCCcchhhh
Q 004877 650 VAFSPTGWTFSKGKKKSPGRRWQ 672 (725)
Q Consensus 650 I~~~~TGw~~~~g~e~t~gr~~~ 672 (725)
|.| +||... ++|+|+++.
T Consensus 364 VIf--~g~~~p---~gTlgr~l~ 381 (717)
T 2i7x_A 364 LIL--TKPSFE---CASSLDKIL 381 (717)
T ss_dssp EEE--CSSCCT---TCHHHHHHH
T ss_pred EEE--EcCCCC---CCChHHHHH
Confidence 754 676531 478887754
No 12
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.74 E-value=1.3e-17 Score=172.18 Aligned_cols=184 Identities=15% Similarity=0.138 Sum_probs=131.0
Q ss_pred CCCceEeCCccc---------cCCCccEEEeccCchhhhCChhhh-----c--------CCceEEeCHHHHHHHHHHhCC
Q 004877 399 PGTPFRVDAFKY---------LRGDCSHWFLTHFHMDHYQGLTRS-----F--------HHGKIYCSLITARLVNMKIGI 456 (725)
Q Consensus 399 pg~~~~ID~f~~---------~~~~idaIfLTHaH~DHigGLp~~-----~--------~~~pIY~s~~T~~ll~~~lg~ 456 (725)
.+..+.||++.. ...++++|||||.|.||++|++.+ + ...+||+++.+.+.+....-.
T Consensus 51 ~~~~iLiD~G~~~~~~l~~~~~~~~i~~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 130 (268)
T 1zkp_A 51 DGFRLLVDCGSGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHSLTHE 130 (268)
T ss_dssp TTEEEEECCCTTHHHHHTTTCCGGGCCEEECSCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECSSSHHHHHTTCBT
T ss_pred CCcEEEEECCHHHHHHHHHhCCcccCCEEEEecCCchhhCCHHHHHHHHHhcccccCCCCceEEEeCccHHHHHHhcccC
Confidence 455677777632 124689999999999999999832 1 247999999998877643211
Q ss_pred CCcceEEecCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCC
Q 004877 457 PWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNP 536 (725)
Q Consensus 457 ~~~~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~ 536 (725)
....+..+..++.+.+++++|+++++.|.+|+++|+|+. +|++++|+||+.+.+.+... ..++|+||+|+||...
T Consensus 131 ~~~~~~~~~~g~~~~~g~~~v~~~~~~H~~~~~~~~i~~-~~~~i~~~GD~~~~~~~~~~----~~~~d~li~e~~~~~~ 205 (268)
T 1zkp_A 131 PHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITA-GNDIVVYSADSSYIPEFIPF----TKDADLFICECNMYAH 205 (268)
T ss_dssp TTEEEEECCTTSCEEETTEEEEEEECCSSSCCEEEEEEE-TTEEEEECCSCCCCTTHHHH----HTTCSEEEEECCBCTT
T ss_pred CccceEEecCCCeEEECCEEEEEEECCCCCCceEEEEEE-CCeEEEEeCCCCCCHHHHHH----HcCCCEEEEECCCCcc
Confidence 123456788889999999999999999999999999986 67889999999998776543 2489999999999764
Q ss_pred CC----CCCCHHHHHHHHHHHHHHhhcCCCcEEEEecccc--cHHHHHHHHHHHcCCcEEEech
Q 004877 537 LY----DFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTI--GKERLFLEVARVLRKKIYVNAA 594 (725)
Q Consensus 537 ~~----~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~sl--Greqll~eLa~~l~~~I~V~~~ 594 (725)
.. .|.+.++ +.+++++ ++++. +++..|+. .+++++.++.+.++.+|.+...
T Consensus 206 ~~~~~~~H~~~~~----a~~~~~~--~~~~~-lil~H~~~~~~~~~~~~~~~~~~~~~v~~a~d 262 (268)
T 1zkp_A 206 QEAAKAGHMNSTE----VASIAKD--ANVKE-LLLTHLPHTGNPADLVTEAKQIFSGHITLAHS 262 (268)
T ss_dssp SCCGGGTCCBHHH----HHHHHHH--TTCSE-EEEESBCSSSCTHHHHHHHHTTCCSEEEECCT
T ss_pred ccccCCCCCCHHH----HHHHHHH--cCCCE-EEEECCCCCCChHHHHHHHHHhCCCCEEEEeC
Confidence 32 1344333 3344442 34444 44444543 4566777777777777777543
No 13
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.66 E-value=2e-16 Score=163.26 Aligned_cols=181 Identities=15% Similarity=0.080 Sum_probs=120.5
Q ss_pred CCCceEeCCcccc-------CCCccEEEeccCchhhhCChhhh-------cC----CceEEeCHHHHHHHHHHh------
Q 004877 399 PGTPFRVDAFKYL-------RGDCSHWFLTHFHMDHYQGLTRS-------FH----HGKIYCSLITARLVNMKI------ 454 (725)
Q Consensus 399 pg~~~~ID~f~~~-------~~~idaIfLTHaH~DHigGLp~~-------~~----~~pIY~s~~T~~ll~~~l------ 454 (725)
.+..+.||++... ..++++|||||+|.||++|++.+ +. ..+||+++.+. .+...+
T Consensus 18 ~~~~iLiD~G~~~~~~l~~~~~~i~~IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~ 96 (280)
T 2e7y_A 18 SPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNR-AVEEYTEFIKRA 96 (280)
T ss_dssp GGGTEEEEECTTHHHHHGGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCH-HHHHHHHHHHHH
T ss_pred CCcEEEEECCcchHHHhccCccCCCEEEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccHH-HHHHHHHHHhhc
Confidence 3556788877432 24789999999999999999854 11 37899999887 665421
Q ss_pred C--CCC-cceEEecCCCEEEEC-----CEEEEEEecccCCC--CeEEEEecc----------------------------
Q 004877 455 G--IPW-DRLQVLPLNQKTTIA-----GIDVTCLEANHCPG--SIIILFEPQ---------------------------- 496 (725)
Q Consensus 455 g--~~~-~~~~~l~~ge~~~Ig-----gv~Vt~~~agH~pG--S~~flIe~~---------------------------- 496 (725)
+ ... ..++.+..++.+.++ +++|++++++|++| +++|+|+..
T Consensus 97 ~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~~~~l~~~~~g~~~~~~~~l~~~~g~~~~ 176 (280)
T 2e7y_A 97 NPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFV 176 (280)
T ss_dssp CGGGTTTEEEEEECTTCCEECCCSSCSCEEEEEEECCSCSSSCCEEEEEEEEEEEECGGGTTCCHHHHHHHHHHHCTGGG
T ss_pred ccCCCCceEEEEcCCCCEEEeCCcccCCEEEEEEEccCCCCCceEEEEEEEcccccCHhhcCCCHHHHHHHHhhcCCcee
Confidence 1 111 246778899999998 89999999999999 999999631
Q ss_pred ----CCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCC----CCCCCHHHHHHHHHHHHHHhhcCCCcEEEEe
Q 004877 497 ----NGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPL----YDFPKQEAVIQFVIEAIQAESFNPKTLFLIG 568 (725)
Q Consensus 497 ----~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~----~~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp 568 (725)
.|++|+|+||+++. .... ..++|+||+|+||.++. ..|.+.+++. +++++ ++.+ .+++.
T Consensus 177 ~~~~~g~~i~ysgDt~~~--~~~~----~~~~d~li~e~t~~~~~~~~~~~H~t~~~a~----~~~~~--~~~~-~lvl~ 243 (280)
T 2e7y_A 177 TEEYHKKVLTISGDSLAL--DPEE----IRGTELLIHECTFLDARDRRYKNHAAIDEVM----ESVKA--AGVK-KVILY 243 (280)
T ss_dssp EEEEEEEEEEECCSCSSC--CHHH----HTTCSCEEEECCBC--------CCCBHHHHH----HHHHH--HTCC-EEEEE
T ss_pred cCCccCCEEEEECCCChH--HHHh----hcCCCEEEEeCCcCChhhHHhcCCCCHHHHH----HHHHH--cCCC-EEEEE
Confidence 35689999999987 2222 35899999999997652 3455544433 33332 2344 45555
Q ss_pred cccccHH----HHHHHHHHHcC-CcEEEec
Q 004877 569 SYTIGKE----RLFLEVARVLR-KKIYVNA 593 (725)
Q Consensus 569 ~~slGre----qll~eLa~~l~-~~I~V~~ 593 (725)
.|+.... +++.++.+.+. .+|.+..
T Consensus 244 H~~~~~~~~~~~~~~~~~~~~~~~~v~~a~ 273 (280)
T 2e7y_A 244 HISTRYIRQLKSVIKKYREEMPDVEILYMD 273 (280)
T ss_dssp SCCGGGHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred eecCcCcchHHHHHHHHHHhCCCceEEEeC
Confidence 5665322 23344444553 4666543
No 14
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.65 E-value=1.5e-15 Score=160.67 Aligned_cols=145 Identities=16% Similarity=0.212 Sum_probs=108.1
Q ss_pred CCCceEeCCcccc----------CCCccEEEeccCchhhhCChhhhc---------CCceEEeCHHHHHHHHHHhC--C-
Q 004877 399 PGTPFRVDAFKYL----------RGDCSHWFLTHFHMDHYQGLTRSF---------HHGKIYCSLITARLVNMKIG--I- 456 (725)
Q Consensus 399 pg~~~~ID~f~~~----------~~~idaIfLTHaH~DHigGLp~~~---------~~~pIY~s~~T~~ll~~~lg--~- 456 (725)
.+..+.||++... ..++++|||||.|.||++|++.+. ...+||+++.+..+++..+. .
T Consensus 30 ~~~~iLiD~G~~~~~~l~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 109 (320)
T 1y44_A 30 RRSVWLFDCGEATQHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT 109 (320)
T ss_dssp TSEEEEECCCTTHHHHHTTSSCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCHHHHHHHHHcCCCHHHcCEEEEeCCChhhhCCHHHHHHHHHhcCCCCCEEEEeCHHHHHHHHHHHHhhcc
Confidence 3445667766321 136899999999999999998432 24689999999888875431 1
Q ss_pred --CC-cceEEecCCCEEEECCEEEEEEecccCCCCeEEEEec--------------------------------------
Q 004877 457 --PW-DRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEP-------------------------------------- 495 (725)
Q Consensus 457 --~~-~~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~-------------------------------------- 495 (725)
.+ ..+..+..++.+.+++++|++++++|.+++++|+++.
T Consensus 110 ~~~~~~~~~~~~~g~~~~~~~~~v~~~p~~H~~~~~gy~i~~~~~~~~~~~~~~~~~g~~~g~~~~~l~~g~~v~~~~G~ 189 (320)
T 1y44_A 110 HLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGR 189 (320)
T ss_dssp CCSSCEEEEECCSEEEEECSSEEEEEEECBSSSSBEEEEEEECCBCCCC-------------------------------
T ss_pred CCCCceEEEEcCCCceEecCCEEEEEEEccCCCCcceEEEecCCCcCccCHHHHHHcCCCCchhHHHhhCCCeEEcCCCe
Confidence 11 2456778888899999999999999999999999973
Q ss_pred -----------cCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCC------CCCCCHHHHH
Q 004877 496 -----------QNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPL------YDFPKQEAVI 547 (725)
Q Consensus 496 -----------~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~------~~~p~~~e~~ 547 (725)
.+|++|+|+||+++.+.+... ..++|+||+||||.+.. ..|.+.+++.
T Consensus 190 i~~~~~~~~~~~~g~~i~~sgDt~~~~~~~~~----~~~~D~li~E~t~~~~~~~~a~~~~H~t~~~a~ 254 (320)
T 1y44_A 190 IINGNDFLEPPKKGRSVVFSGDTRVSDKLKEL----ARDCDVMVHEATFAKEDRKLAYDYYHSTTEQAA 254 (320)
T ss_dssp -------CCCCBCCCEEEECCSCBCCHHHHHH----TTTCSEEEEECCBCTTCHHHHHHTTCCBHHHHH
T ss_pred EEcHHHhcccCCCCCEEEEeCCCCCHHHHHHH----hCCCCEEEEeccCCcchHhHHhhcCCCCHHHHH
Confidence 146789999999998865443 35899999999998742 3455554443
No 15
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.64 E-value=1.8e-15 Score=158.74 Aligned_cols=163 Identities=14% Similarity=0.098 Sum_probs=116.0
Q ss_pred CCCceEeCCcccc----------CCCccEEEeccCchhhhCChhhhc---------CCceEEeCHHHHHHHHHHhC--C-
Q 004877 399 PGTPFRVDAFKYL----------RGDCSHWFLTHFHMDHYQGLTRSF---------HHGKIYCSLITARLVNMKIG--I- 456 (725)
Q Consensus 399 pg~~~~ID~f~~~----------~~~idaIfLTHaH~DHigGLp~~~---------~~~pIY~s~~T~~ll~~~lg--~- 456 (725)
.+..+.||+.... ..++++|||||.|.||++|++.+. ...+||+++.+..+++..+. .
T Consensus 32 ~~~~iliD~G~~~~~~l~~~~~~~~~i~~i~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 111 (306)
T 2cbn_A 32 QSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGS 111 (306)
T ss_dssp CCCEEEECCCTTHHHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCHHHHHHHHHhCCCHHHcCEEEEecCCchhhCChHHHHHHHHhcCCCCCeEEEcCccHHHHHHHHHHhhcc
Confidence 3445677766321 247899999999999999998432 24689999999888875431 1
Q ss_pred --CC-cceEEecCCCEEEECCEEEEEEecccCCCCeEEEEecc-------------------------------------
Q 004877 457 --PW-DRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQ------------------------------------- 496 (725)
Q Consensus 457 --~~-~~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~------------------------------------- 496 (725)
.+ ..++.+..++.+.+++++|+++++.|..++++|+|+..
T Consensus 112 ~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~~~~~~gv~~~~~~~~l~~g~~v~~~~G~ 191 (306)
T 2cbn_A 112 WTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGR 191 (306)
T ss_dssp CCSSCEEEEECCSEEEEECSSEEEEEEECBSSSCCEEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTE
T ss_pred CCCceEEEEEcCCCcEeecCCEEEEEEEccCCCCccEEEEEecCccCccCHHHHHHcCCCCchHHHHhcCCCeEEcCCCc
Confidence 11 24567788888999999999999999999999999731
Q ss_pred ------------CCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCC------CCCCCCHHHHHHHHHHHHHHhh
Q 004877 497 ------------NGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNP------LYDFPKQEAVIQFVIEAIQAES 558 (725)
Q Consensus 497 ------------~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~------~~~~p~~~e~~~~l~e~I~~~~ 558 (725)
+|++|+|+||+++.+.+... ..++|+||+||||.+. ...|.+.+++. +++++
T Consensus 192 ~~~~~~~~~~~~~g~~i~~sgDt~~~~~~~~~----~~~~D~li~E~t~~~~~~~~a~~~~H~t~~~a~----~~a~~-- 261 (306)
T 2cbn_A 192 QINGADYLAAPVPGKALAIFGDTGPCDAALDL----AKGVDVMVHEATLDITMEAKANSRGHSSTRQAA----TLARE-- 261 (306)
T ss_dssp ECCGGGTBCCCCCCCEEEECCSCBSCSTHHHH----HTTCSEEEEECCBCGGGHHHHHHTTCCBHHHHH----HHHHH--
T ss_pred EEcHHHhcCCCCCCCEEEEeCCCCCHHHHHHH----hcCCCEEEEECcCChhhHhHHhhcCCCCHHHHH----HHHHH--
Confidence 46789999999998765433 3589999999999864 23455554443 33322
Q ss_pred cCCCcEEEEecccc
Q 004877 559 FNPKTLFLIGSYTI 572 (725)
Q Consensus 559 ~~~~~~vlIp~~sl 572 (725)
++.+. +++..|+.
T Consensus 262 ~~~~~-lvl~H~s~ 274 (306)
T 2cbn_A 262 AGVGK-LIITHVSS 274 (306)
T ss_dssp HTCSE-EEEECBCT
T ss_pred cCCcE-EEEEeecC
Confidence 23444 44555654
No 16
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=99.64 E-value=8e-16 Score=158.65 Aligned_cols=167 Identities=18% Similarity=0.124 Sum_probs=115.4
Q ss_pred cCCCCceEeCCccc------cCCCccEEEeccCchhhhCChhhhcC----CceEEeCHHHHHHHHHHhCCC-Ccce-EEe
Q 004877 397 CVPGTPFRVDAFKY------LRGDCSHWFLTHFHMDHYQGLTRSFH----HGKIYCSLITARLVNMKIGIP-WDRL-QVL 464 (725)
Q Consensus 397 ~ipg~~~~ID~f~~------~~~~idaIfLTHaH~DHigGLp~~~~----~~pIY~s~~T~~ll~~~lg~~-~~~~-~~l 464 (725)
...+..+.||++.. ...++++|||||.|.||++|++.+.. ..+||+++.+..+ ...+..+ ...+ ..+
T Consensus 45 ~~~~~~iLiD~G~~~~~~~~~~~~id~IliTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~ 123 (258)
T 3g1p_A 45 KFNDAITLIDAGLHDLADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGC-DDLFKHPGLLDFSHTV 123 (258)
T ss_dssp EETTEEEEECCCCTTHHHHCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEEECCCSSCS-TTTTTSCTTEEEEEEC
T ss_pred EECCcEEEEECCchHHHhhcCcccCCEEEEccCchhHhCCHHHHhccCCCCeEEEeChhhhhH-HHHhcCCCcccccccc
Confidence 44677788998721 12479999999999999999985432 3789999887621 1111111 1122 578
Q ss_pred cCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCC---CCCC
Q 004877 465 PLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPL---YDFP 541 (725)
Q Consensus 465 ~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~---~~~p 541 (725)
..++.+.+++++|+++++.|.+++++|+|+. +|++++|+||+.+.++..... +...++|+||+|+||.... ..|.
T Consensus 124 ~~g~~~~~g~~~v~~~~~~H~~~~~g~~i~~-~~~~i~~~GDt~~~~~~~~~~-l~~~~~Dlli~e~t~~~~~~~~~~H~ 201 (258)
T 3g1p_A 124 EPFVVFDLQGLQVTPLPLNHSKLTFGYLLET-AHSRVAWLSDTAGLPEKTLKF-LRNNQPQVMVMDCSHPPRADAPRNHC 201 (258)
T ss_dssp CTTCCEEETTEEEEEEECCSSSCCEEEEEEC-SSCEEEEECSCSSCCHHHHHH-HHHTCCSEEEEECCBSSCSSCCSSSC
T ss_pred CCCCeEEECCEEEEEEECCCCCCceEEEEEe-CCcEEEEECCCCCCCHHHHHH-HHhCCCCEEEEeCCCCCccccCCCCC
Confidence 8899999999999999999999999999995 788899999999876632221 2125899999999997643 2355
Q ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEEeccccc
Q 004877 542 KQEAVIQFVIEAIQAESFNPKTLFLIGSYTIG 573 (725)
Q Consensus 542 ~~~e~~~~l~e~I~~~~~~~~~~vlIp~~slG 573 (725)
+.+++. +++++ ++++. +++..|+..
T Consensus 202 ~~~~a~----~~~~~--~~~k~-lil~H~s~~ 226 (258)
T 3g1p_A 202 DLNTVL----ALNQV--IRSPR-VILTHISHQ 226 (258)
T ss_dssp BHHHHH----HHHHH--HCCSC-EEEESCCHH
T ss_pred CHHHHH----HHHHH--cCCCE-EEEECccCc
Confidence 554443 33332 23444 444446533
No 17
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=99.60 E-value=1.1e-14 Score=153.07 Aligned_cols=174 Identities=16% Similarity=0.128 Sum_probs=121.8
Q ss_pred CceEeCCcccc--------CCCccEEEeccCchhhhCChhhhc-------CCceEEeCHHHHHHHHHHhCCC--------
Q 004877 401 TPFRVDAFKYL--------RGDCSHWFLTHFHMDHYQGLTRSF-------HHGKIYCSLITARLVNMKIGIP-------- 457 (725)
Q Consensus 401 ~~~~ID~f~~~--------~~~idaIfLTHaH~DHigGLp~~~-------~~~pIY~s~~T~~ll~~~lg~~-------- 457 (725)
..+.||+.... ..+|++|||||.|.||++||+.+. ...+||+++.+.+.+...++..
T Consensus 78 ~~iLID~G~~~~~~l~~~~~~~id~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~~~l~~~~~~~~~~~~~~~ 157 (293)
T 3md7_A 78 TVVVIDTGPDFRMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSS 157 (293)
T ss_dssp EEEEECCCTTHHHHHHHHTCCCCSEEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCGGGTSCCTTCC
T ss_pred eEEEEECCccHHHHHHhcCCCcccEEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHHHHHHHhhhhhhccccccC
Confidence 46788887432 257999999999999999999432 3589999999999888654311
Q ss_pred ---CcceEEecCCCEEEECC----EEEEEEecccC-CCCeEEEEeccCCeEEEEecccCCC-hhhhhhcccCCCCccEEE
Q 004877 458 ---WDRLQVLPLNQKTTIAG----IDVTCLEANHC-PGSIIILFEPQNGKAVLHTGDFRFS-EEMASMSVLQTCPIHTLI 528 (725)
Q Consensus 458 ---~~~~~~l~~ge~~~Igg----v~Vt~~~agH~-pGS~~flIe~~~Gk~IlYTGD~~~~-~~~~~~~~l~~~~~DlLI 528 (725)
...++.+..++++.+++ ++|+++++.|. .++++|+|+ +++|+||+... +.+... ..++|+||
T Consensus 158 ~~~~~~~~~l~~g~~~~~g~~~~~~~v~~~~~~H~~~~~~g~~i~-----~~~y~gDt~~~~~~~~~~----~~~~Dlli 228 (293)
T 3md7_A 158 YPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIG-----SVVYCTDVSAFPEQSLQY----IKDADVLI 228 (293)
T ss_dssp CCCCEEEEECCTTCCEEECCTTCCEEEEEEEEEETTEEEEEEEET-----TEEEECSCSBCCGGGHHH----HTTCSEEE
T ss_pred CCCceEEEEcCCCCcEEECCCCCcEEEEEEEecCCCCCEEEEEEe-----EEEEECCCCCCCHHHHHH----hcCCCEEE
Confidence 12466788899999999 99999999997 699999997 39999999854 444333 34899999
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHcCCcEEEe
Q 004877 529 LDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVN 592 (725)
Q Consensus 529 lEaTy~~~~~~~p~~~e~~~~l~e~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l~~~I~V~ 592 (725)
+|+++..+...|.+.+++++ ++++ ++++.+ ++..|+.... ..++++.+...|.+.
T Consensus 229 ~e~~~~~~~~~H~~~~~a~~----~~~~--~~~k~l-vl~H~~~~~~--~~~~~~~~~~~v~~a 283 (293)
T 3md7_A 229 IGALQYRPHPSHFSLGEALE----WIEK--LSPKRA-ILTHMHVPLD--YETVMRETPHHVEPG 283 (293)
T ss_dssp EECCCSSCBTTBCCHHHHHH----HHHH--HCCSEE-EEESBCTTCC--HHHHHHHSCTTEEEC
T ss_pred EeCccCCCCCCCCCHHHHHH----HHHH--cCCCEE-EEECCCCCCC--HHHHHhhcCCCcEEe
Confidence 99998766556666655543 3332 345444 4444543321 123344555555553
No 18
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=99.60 E-value=8.1e-16 Score=130.69 Aligned_cols=70 Identities=31% Similarity=0.497 Sum_probs=66.1
Q ss_pred cccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcccCCCCc
Q 004877 234 VSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRAVESNK 304 (725)
Q Consensus 234 ~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~~~~~~ 304 (725)
..+|.+||+++||++|.+.|.+++||+++|..|+++||++|||+ +|||+||+.+|++++.++..++...+
T Consensus 2 ~~~v~~wL~~lgL~~Y~~~F~~~~id~e~l~~lt~~DL~~lGI~-~G~RkkIl~ai~~~~~~~~~p~~~~d 71 (74)
T 3k1r_B 2 TSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVP-LGPREKILGAVRRRRQAMERPPALED 71 (74)
T ss_dssp CCHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred cchHHHHHHHCCCHHHHHHHHHcCcCHHHHhHCCHHHHHHcCCC-cchHHHHHHHHHHHHHHhcCCCCccc
Confidence 46799999999999999999999999999999999999999999 99999999999999999998776654
No 19
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.55 E-value=5.1e-15 Score=127.86 Aligned_cols=69 Identities=20% Similarity=0.417 Sum_probs=64.6
Q ss_pred CCCcccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhccc
Q 004877 231 AVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRA 299 (725)
Q Consensus 231 ~~~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~ 299 (725)
+....+|.+||++|||++|.+.|.+++|| ++.|..|+++||++|||+.+||||||+.+|+.++.++.+.
T Consensus 4 ~~~~~~V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~~~~~~~ 73 (81)
T 1ucv_A 4 GSSGLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTST 73 (81)
T ss_dssp CCCCSBHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCccchHHHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHHHHHhhc
Confidence 45578899999999999999999999997 9999999999999999999999999999999999988653
No 20
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=99.54 E-value=7.5e-15 Score=129.26 Aligned_cols=68 Identities=22% Similarity=0.495 Sum_probs=64.7
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
+.+...+|++||++|||++|.+.|.+++|+ ++.|..|+++||++|||+.+||||||+.+|+.||.++.
T Consensus 21 ~~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~Lr~qm~ 89 (90)
T 3h8m_A 21 DFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQML 89 (90)
T ss_dssp CCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCcchhHHHHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 567789999999999999999999999996 99999999999999999999999999999999998875
No 21
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=130.21 Aligned_cols=70 Identities=24% Similarity=0.499 Sum_probs=65.3
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhccc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRA 299 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~ 299 (725)
......+|.+||++|||++|.+.|.+++|+ ++.|+.|+++||++|||+.+||||||+.+|+.++.+..+.
T Consensus 18 ~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l~~~~~~~ 88 (99)
T 2eao_A 18 DFTAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQS 88 (99)
T ss_dssp CTTSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCcchHHHHHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHhhcc
Confidence 455678999999999999999999999997 9999999999999999999999999999999999888653
No 22
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=99.54 E-value=5.4e-14 Score=153.30 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=102.9
Q ss_pred cCCCCceEeCCcccc----------CCCccEEEeccCchhhhCChhhhc-------------CCceEEeCHHHHHHHHHH
Q 004877 397 CVPGTPFRVDAFKYL----------RGDCSHWFLTHFHMDHYQGLTRSF-------------HHGKIYCSLITARLVNMK 453 (725)
Q Consensus 397 ~ipg~~~~ID~f~~~----------~~~idaIfLTHaH~DHigGLp~~~-------------~~~pIY~s~~T~~ll~~~ 453 (725)
...|..+.||++... ..+|++|||||.|.||++||+.+. ...+||++..+.+++...
T Consensus 25 ~~~~~~iLiD~G~g~~~~l~~~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~~~~~~~~~~~~l~iygp~~~~~~l~~~ 104 (368)
T 3zwf_A 25 RCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRT 104 (368)
T ss_dssp EETTEEEEECCCTTHHHHHHHSSSCGGGEEEEECCCSSGGGTTTHHHHHHHHHHHC------CCEEEEEETTHHHHHHHH
T ss_pred EECCeEEEEeCChhHHHHHHHcCCChHHCCEEEECCCChHHhCcHHHHHHHhhhccccccCCCCeEEEEcHHHHHHHHHH
Confidence 345667888887532 136899999999999999998432 157899999999888754
Q ss_pred hCC-----CC-cceEEecC---------------------------CCEE------------EECCEEEEEEecccCCCC
Q 004877 454 IGI-----PW-DRLQVLPL---------------------------NQKT------------TIAGIDVTCLEANHCPGS 488 (725)
Q Consensus 454 lg~-----~~-~~~~~l~~---------------------------ge~~------------~Iggv~Vt~~~agH~pGS 488 (725)
+.. .+ ..++.+.. ++.+ +.++++|+++++.|...+
T Consensus 105 l~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~V~a~~~~H~vp~ 184 (368)
T 3zwf_A 105 MELSHTELVFHYVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKAFRLFHRIPS 184 (368)
T ss_dssp HHHTTCCCSSCEEEEEECCCGGGSCC-------------------CCCEECCBTTTTBEEEEECSSEEEEEEEEESSSCE
T ss_pred HHhhCcCCCceEEEEEeecCccccccccccccccccccccCcccccccccccccccCceeEEeCCCEEEEEEeccCCCce
Confidence 321 11 12333432 2222 337899999999999999
Q ss_pred eEEEEeccC-------------------------------------------------CeEEEEecccCC--Chhhhhhc
Q 004877 489 IIILFEPQN-------------------------------------------------GKAVLHTGDFRF--SEEMASMS 517 (725)
Q Consensus 489 ~~flIe~~~-------------------------------------------------Gk~IlYTGD~~~--~~~~~~~~ 517 (725)
++|+|+..+ |++|+|+||+++ ...+...
T Consensus 185 ~gy~i~e~~~~g~~~~ek~~~~gip~G~~~~~Lk~G~~v~~~dG~~i~~~~v~~~~~~g~~v~~~GDT~~~~~~~~~~~- 263 (368)
T 3zwf_A 185 FGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQDVLKKPIVGRKICILGDCSGVVGDGGVKL- 263 (368)
T ss_dssp EEEEEEECC------------------------------------------------CCCEEEEECSCSEECSSHHHHH-
T ss_pred EEEEEEecCCcCccCHHHHHHcCCCchHHHHhcCCCCeEEecCCEEEEhHHhccccccceEEEEEecCCcccchhHHHH-
Confidence 999997521 788999999997 5544433
Q ss_pred ccCCCCccEEEEecCCCCCC------CCCCCHHH
Q 004877 518 VLQTCPIHTLILDTTYCNPL------YDFPKQEA 545 (725)
Q Consensus 518 ~l~~~~~DlLIlEaTy~~~~------~~~p~~~e 545 (725)
..++|+||+|+||.+.. +.|.+..+
T Consensus 264 ---~~~~Dlli~Eat~~~~~~~~a~~~~H~t~~~ 294 (368)
T 3zwf_A 264 ---CFEADLLIHEATLDDAQMDKAKEHGHSTPQM 294 (368)
T ss_dssp ---TTTCSEEEEECCSCGGGHHHHHHTTCCCHHH
T ss_pred ---hcCCCEEEEecCCChHHHhhhhcCCCCCHHH
Confidence 46899999999998743 34555544
No 23
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=99.53 E-value=5.9e-15 Score=127.79 Aligned_cols=68 Identities=25% Similarity=0.387 Sum_probs=60.3
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
..+...+|.+||.+|||++|.+.|.+++|| ++.|..|+++||++|||+.+||||||+.+|+.++.++.
T Consensus 12 ~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr~~~~ 80 (82)
T 2kso_A 12 PRGSHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVN 80 (82)
T ss_dssp ------CHHHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHHHHTT
T ss_pred CCCCcchHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHHc
Confidence 457788999999999999999999999997 99999999999999999999999999999999998874
No 24
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=99.52 E-value=8.5e-15 Score=126.67 Aligned_cols=69 Identities=25% Similarity=0.510 Sum_probs=64.3
Q ss_pred CCCcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhccc
Q 004877 231 AVDVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRA 299 (725)
Q Consensus 231 ~~~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~ 299 (725)
.....+|.+||++|||++|.+.|.+++| +++.|+.|+++||++|||+.+||||||+.+|+.++.++.+.
T Consensus 8 ~~~~~~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~~~~ 77 (82)
T 1b4f_A 8 YTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMNQI 77 (82)
T ss_dssp CCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHccc
Confidence 3456789999999999999999999999 89999999999999999999999999999999999887653
No 25
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=126.81 Aligned_cols=70 Identities=26% Similarity=0.426 Sum_probs=64.9
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhccc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRA 299 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~ 299 (725)
+.+...+|.+||.+|||++|.+.|.+++|+ ++.|+.|+++||++|||+.+|||+||+.+|+.++.++.+.
T Consensus 8 ~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~~~~~~~ 78 (88)
T 2e8n_A 8 EGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQVNTV 78 (88)
T ss_dssp CCCSCSSHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCchhhHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHhhccc
Confidence 445678899999999999999999999997 9999999999999999999999999999999999888653
No 26
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=99.52 E-value=9.4e-15 Score=129.70 Aligned_cols=69 Identities=22% Similarity=0.474 Sum_probs=64.5
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
......+|.+||++|||++|.+.|.+++| +++.|..|+++||++|||+.+||||||+.+|+.++.++.+
T Consensus 22 ~~~~~~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~~~~~~ 91 (94)
T 1b0x_A 22 EFSAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQ 91 (94)
T ss_dssp -CCSSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHG
T ss_pred CCcchhHHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHHhc
Confidence 45567899999999999999999999999 9999999999999999999999999999999999988754
No 27
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=99.51 E-value=4.2e-14 Score=151.54 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=93.5
Q ss_pred CCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhC------CC--CcceEEecCCCEEEE---CCEEEEE
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIG------IP--WDRLQVLPLNQKTTI---AGIDVTC 479 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg------~~--~~~~~~l~~ge~~~I---ggv~Vt~ 479 (725)
.++++|||||.|.||++||+.+. ...+||+++.+.+.+...+. .. ...++.+..++++.+ ++++|++
T Consensus 81 ~~i~~i~lTH~H~DH~~gl~~l~~~~~~~vy~~~~~~~~l~~~~~~f~~~~~~~~~i~~~~i~~g~~~~i~~~~~~~V~~ 160 (321)
T 3jxp_A 81 TGINAIVLLDSQIDHTTGLLSLREGCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTP 160 (321)
T ss_dssp CSEEEEECSCCCHHHHGGGGGGGGGCCEEEEECHHHHHHTTTTSCHHHHHTTTTTCEEEEECCSSSCEECTTSTTEEEEE
T ss_pred ccCCEEEECCCChhhhhhHHHHHhcCCCeEEECHHHHHHHHhhCccccccccccCceeEEEcCCCCeEEeccCCCeEEEE
Confidence 46899999999999999999654 35799999999888774321 11 124667888999999 9999999
Q ss_pred Eecc--------cC-----CCCeEEEEec-cCCeEEEEecccCCChh-hhhhcccCCCCccEEEEecCCCC
Q 004877 480 LEAN--------HC-----PGSIIILFEP-QNGKAVLHTGDFRFSEE-MASMSVLQTCPIHTLILDTTYCN 535 (725)
Q Consensus 480 ~~ag--------H~-----pGS~~flIe~-~~Gk~IlYTGD~~~~~~-~~~~~~l~~~~~DlLIlEaTy~~ 535 (725)
+++. |. ..+++|+|+. .+|++|+|+||++..++ +... ..++|+||+||||..
T Consensus 161 ~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~g~~i~y~~Dt~~~~~~~~~~----~~~~D~li~eat~~~ 227 (321)
T 3jxp_A 161 FPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAM----MHGADCLLVDGTLWE 227 (321)
T ss_dssp EEECCCCCTTCTTTTSCCTTSEEEEEEEETTTCCEEEEESSCCCCCHHHHHH----HHHCSEEEEECCCSS
T ss_pred EEecCCccccccccccccCCCcEEEEEEecCCCcEEEEECCCCCCCHHHHHH----hcCCCEEEEeCCCCC
Confidence 9997 74 3789999982 27889999999996543 3333 247999999999754
No 28
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=99.50 E-value=6.3e-15 Score=127.82 Aligned_cols=70 Identities=30% Similarity=0.488 Sum_probs=58.2
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcC-CCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhccc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREE-IDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRA 299 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~-id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~ 299 (725)
+.+...+|.+||++|||++|.+.|.+++ +|++.|+.|+++||++|||+.+|||+||+.+|+.++.++.++
T Consensus 11 ~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~~~~ 81 (83)
T 2qkq_A 11 HYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAKPG 81 (83)
T ss_dssp ---CCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC-------
T ss_pred CCCccchHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445678999999999999999999999 599999999999999999999999999999999999887643
No 29
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=99.49 E-value=2.1e-14 Score=121.67 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=65.2
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
..|+..+|.+||.++||++|.+.|.+++||+++|+.|+++||++|||+.+|||+||+.+|+.|+.+.+
T Consensus 5 ~~Ws~~~V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~e 72 (74)
T 2gle_A 5 HEWSVQQVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLE 72 (74)
T ss_dssp GGCCSGGGHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 56899999999999999999999999999999999999999999999999999999999999998764
No 30
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=99.49 E-value=1.2e-14 Score=126.96 Aligned_cols=68 Identities=26% Similarity=0.445 Sum_probs=57.0
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
+.....+|.+||++|||++|.+.|.+++|+ ++.|..|+++||++|||+.+||||||+.+|+.||.++.
T Consensus 17 d~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~Lr~qm~ 85 (86)
T 3kka_C 17 QGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVN 85 (86)
T ss_dssp ------CHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHCC----
T ss_pred cccchhHHHHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 445678899999999999999999999996 99999999999999999999999999999999988764
No 31
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=99.46 E-value=1.2e-14 Score=123.89 Aligned_cols=68 Identities=28% Similarity=0.384 Sum_probs=60.7
Q ss_pred CCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 231 AVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 231 ~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
.|+..+|.+||.++||++|.+.|.+++||++.|+.|+++||++|||+.+|||+||+.+|+.++.....
T Consensus 4 ~Ws~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~~~~~ 71 (76)
T 2f3n_A 4 LWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQLDGSRRH 71 (76)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC------
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHHHHHHhh
Confidence 58889999999999999999999999999999999999999999999999999999999999876543
No 32
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=99.45 E-value=4.1e-14 Score=122.15 Aligned_cols=69 Identities=29% Similarity=0.459 Sum_probs=63.2
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
..|+..+|.+||.++||++|.+.|.+++||+..|+.|+++||++|||+.+|||+||+.+|+.++.....
T Consensus 8 ~~Ws~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~~~~~ 76 (81)
T 3bq7_A 8 HLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRSSRH 76 (81)
T ss_dssp GGCCHHHHHHHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC----
T ss_pred hhCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999999999999999999999999999999999999999999976643
No 33
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=99.45 E-value=6.7e-13 Score=137.43 Aligned_cols=129 Identities=15% Similarity=0.245 Sum_probs=96.0
Q ss_pred CccEEEeccCchhhhCChhhhc--CCceEEeC-HHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEecccCCC---
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSF--HHGKIYCS-LITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEANHCPG--- 487 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~--~~~pIY~s-~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~agH~pG--- 487 (725)
++++|||||.|.||+++++... ...+||++ ..+...+.. .|.. .+..+ ++++.+++++|+++++.|.++
T Consensus 64 ~id~iliTH~H~DH~~~~~~~~~~~~~~v~~~~~~~~~~l~~-~g~~--~~~~~--~~~~~~~~~~i~~~pa~H~~~~~~ 138 (264)
T 3rpc_A 64 NVTAVVVTHTHLDHWDDTAINSIPKSLPIFVQNTADKELITS-QGFI--DVRII--FESLEFNGITLRKTGGSHGTVEMY 138 (264)
T ss_dssp TCCEEECSCCCGGGSCHHHHHHSCTTSCEEESSHHHHHHHHH-TTCS--CEEEC--SSEEEETTEEEEEECCCSSCHHHH
T ss_pred cCCEEEECCCchhhCCCHHHHhhccCCeEEEeCHHHHHHHHh-cCCC--eeEEe--cccEEECCEEEEEeccccCCcccc
Confidence 7899999999999999998432 35899999 888877764 3443 33443 689999999999999999764
Q ss_pred -----------CeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCC----CCCCCCHHHHHHH
Q 004877 488 -----------SIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNP----LYDFPKQEAVIQF 549 (725)
Q Consensus 488 -----------S~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~----~~~~p~~~e~~~~ 549 (725)
.++|+|+..+|++|+|+||+.+.+++.... ...++|++++++++... ...|.+.+++.+.
T Consensus 139 ~~p~~~~~~~~~~g~~i~~~~~~~i~~~GDt~~~~~~~~~~--~~~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~ 213 (264)
T 3rpc_A 139 ANPVLAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVEKAL--LRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRM 213 (264)
T ss_dssp TSTTHHHHHCCCCEEEEECTTSCCEEECCSCCSCHHHHHHH--HHHCCSEEEEECSCBCBTTCSSCSSCCHHHHHHH
T ss_pred ccccccccccccEEEEEEeCCccEEEEECCcCchHHHHHHH--HHhCCCEEEEecCccccccccCCcccCHHHHHHH
Confidence 589999974377899999999998865431 12368999999985432 1235555554433
No 34
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=99.45 E-value=3.1e-14 Score=127.75 Aligned_cols=67 Identities=27% Similarity=0.367 Sum_probs=62.4
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhccc
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRA 299 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~ 299 (725)
...+|.+||.+|||++|.+.|.+++|| ++.|..|+++||++|||+.+|||+||+.+|+.|+.+....
T Consensus 25 ~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr~~~~~~ 92 (100)
T 2kg5_A 25 QDLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLD 92 (100)
T ss_dssp TTCBHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTTTCCCSC
T ss_pred CcChHHHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHHhcccCC
Confidence 457899999999999999999999997 9999999999999999999999999999999999776543
No 35
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=99.44 E-value=4.8e-14 Score=123.06 Aligned_cols=64 Identities=33% Similarity=0.461 Sum_probs=59.9
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHH
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIK 293 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~ 293 (725)
..|...+|.+||++|||++|.+.|.+++| +++.|..|+++||++|||+.+|||+||+.+|+.||
T Consensus 22 ~~~~~~~V~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~LK 86 (86)
T 2k4p_A 22 SGLGEAGMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLSK 86 (86)
T ss_dssp CCCCSCSSHHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHCC
T ss_pred CCCCcCcHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 44667889999999999999999999999 79999999999999999999999999999999874
No 36
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.43 E-value=5.5e-14 Score=124.03 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=62.5
Q ss_pred cccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcccC
Q 004877 234 VSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRAV 300 (725)
Q Consensus 234 ~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~~ 300 (725)
..+|.+||++|||++|.+.|.+++| +++.|..|+++||++|||+.+||||||+.+|+.|+.++...+
T Consensus 15 ~~~V~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~~~~~~ 82 (91)
T 1x40_A 15 NVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKMQDIP 82 (91)
T ss_dssp CCBHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhhcCCCC
Confidence 4679999999999999999999999 699999999999999999999999999999999999985433
No 37
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=99.43 E-value=4.7e-14 Score=122.07 Aligned_cols=63 Identities=30% Similarity=0.464 Sum_probs=58.6
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHH
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l 292 (725)
......+|++||++|||++|.+.|.+++|+ ++.|..|+++||++|||+.+||||||+.+|++|
T Consensus 19 ~~~~~~~V~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~l 82 (82)
T 3hil_A 19 DGIPYRTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82 (82)
T ss_dssp -CCCCSSHHHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred CCcchhHHHHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHhC
Confidence 456678999999999999999999999996 999999999999999999999999999999864
No 38
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.43 E-value=1.2e-12 Score=133.90 Aligned_cols=133 Identities=16% Similarity=0.099 Sum_probs=101.0
Q ss_pred cCCCCceEeCCcccc-----CCCccEEEeccCchhhhCChhh---h-cCCceEEeCHHHHHHHHHHhCCCCcceEEecCC
Q 004877 397 CVPGTPFRVDAFKYL-----RGDCSHWFLTHFHMDHYQGLTR---S-FHHGKIYCSLITARLVNMKIGIPWDRLQVLPLN 467 (725)
Q Consensus 397 ~ipg~~~~ID~f~~~-----~~~idaIfLTHaH~DHigGLp~---~-~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~g 467 (725)
...+..+.||++... ..++++|||||.|.||+ |+.. + ....+||++..+...+. ....+..+
T Consensus 43 ~~~~~~iliDpg~~~~~~~~~~~id~VliTH~H~DH~-~~~~l~~~~~~~~~v~~~~~~~~~l~--------~~~~l~~g 113 (235)
T 3kl7_A 43 TYDNHSIQVDPVSEYADYTTFPKADIILITHEHGDHL-DPKAIQAVEKSDTEIIANENSQKKLG--------KGKVLKNG 113 (235)
T ss_dssp EETTEEEEESCCTTTCCTTSSCCCSEEEECCSSTTTC-CHHHHHHHCCTTCEEEECHHHHHHHT--------CSEECCTT
T ss_pred EECCEEEEECCCCCccchhhCCCCCEEEECCCccccC-CHHHHHHhhcCCCEEEEcHHHHHHhc--------CcEEecCC
Confidence 345667788887532 13789999999999999 5542 1 24689999999987763 24678889
Q ss_pred C-EEEECCEEEEEEecccCCC----------CeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCC
Q 004877 468 Q-KTTIAGIDVTCLEANHCPG----------SIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNP 536 (725)
Q Consensus 468 e-~~~Iggv~Vt~~~agH~pG----------S~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~ 536 (725)
+ .+.+++++|+++++.|.++ +++|+|+. +|++++|+||+.+.+++.. ..++|++++++..
T Consensus 114 ~~~~~~g~~~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~-~g~~i~~~GDt~~~~~~~~-----l~~~Dv~il~~~~--- 184 (235)
T 3kl7_A 114 DTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTF-DGLRVYIAGDTEDIPEMKD-----LKDIDIAFLPVNQ--- 184 (235)
T ss_dssp CEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEE-TTEEEEECCSCCSCGGGGG-----CCSCSEEEEECCT---
T ss_pred CEEEEECCEEEEEEEeecCCCccccccCCCCceEEEEEe-CCeEEEEECCCCchhhHHh-----hcCCCEEEECCCC---
Confidence 9 8999999999999999652 58999996 7889999999999876532 2489999999963
Q ss_pred CCCCCCHHHHHH
Q 004877 537 LYDFPKQEAVIQ 548 (725)
Q Consensus 537 ~~~~p~~~e~~~ 548 (725)
..+.+.+++.+
T Consensus 185 -~~h~~~~ea~~ 195 (235)
T 3kl7_A 185 -PYTMTVSQAAK 195 (235)
T ss_dssp -TTSCCHHHHHH
T ss_pred -CcccCHHHHHH
Confidence 13455555544
No 39
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=99.42 E-value=9.3e-14 Score=119.36 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=65.1
Q ss_pred CCCCcccHHHHHHHC--CChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 230 KAVDVSPVVEFLHSL--GLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 230 ~~~~~~~v~~wL~~l--gL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
..|+...|.+||.++ ||++|.+.|.+++||+++|+.|+++||++|||+.+|||+||+.+|+.|+.....
T Consensus 5 ~~Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~~~ 75 (80)
T 3bs5_B 5 SKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYG 75 (80)
T ss_dssp GGCCHHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 568999999999999 599999999999999999999999999999999999999999999999987654
No 40
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=119.83 Aligned_cols=70 Identities=29% Similarity=0.395 Sum_probs=65.8
Q ss_pred CCCCCcccHHHHHHHC--CChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 229 QKAVDVSPVVEFLHSL--GLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 229 ~~~~~~~~v~~wL~~l--gL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
...|+...|.+||..+ ||++|.+.|.+++|++++|+.|+++||++|||+.+|||+||+.+|+.|+.....
T Consensus 8 v~~Wt~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~~~ 79 (83)
T 2ean_A 8 VSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNSG 79 (83)
T ss_dssp GGGCCTTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 3569999999999999 599999999999999999999999999999999999999999999999988754
No 41
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4e-14 Score=126.30 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=63.0
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
..+.+.+|.+||.+|||++|.+.|.+++|| ++.|..|+++||++|||+.+||||||+.+|+.++.+..
T Consensus 19 ~~~~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~lr~~~~ 87 (97)
T 2dl0_A 19 SPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPG 87 (97)
T ss_dssp CCSCCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTCCCCCC
T ss_pred CccccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHHHcccC
Confidence 336778999999999999999999999996 89999999999999999999999999999999987654
No 42
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=124.56 Aligned_cols=69 Identities=26% Similarity=0.325 Sum_probs=64.7
Q ss_pred CCCCCCcccHHHHHHHCCChh--hHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhh
Q 004877 228 PQKAVDVSPVVEFLHSLGLAR--YEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 228 ~~~~~~~~~v~~wL~~lgL~~--Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
+...|+...|.+||..+||++ |++.|.+++||+++|+.|+++||++|||+.+|||+||+.+|+.|+...
T Consensus 26 ~v~~Ws~~~V~~WL~~lgl~~~~y~~~F~~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~~~ 96 (103)
T 2e8o_A 26 DYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQIH 96 (103)
T ss_dssp CGGGCHHHHHHHHHHHHTCCCHHHHHHHHHTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHTTT
T ss_pred ChhhCCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhH
Confidence 335688999999999999999 999999999999999999999999999999999999999999998664
No 43
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=99.38 E-value=3e-13 Score=115.95 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=60.4
Q ss_pred CCcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHh
Q 004877 232 VDVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
....+|.+||..|||++|.+.|..++| +++.+..|+++||++|||+.+|||+||+.+|+.|+.+
T Consensus 10 ~~~~~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L~~~ 74 (78)
T 1v38_A 10 ENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSG 74 (78)
T ss_dssp SSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSC
T ss_pred CCcCcHHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999 7999999999999999999999999999999999865
No 44
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-13 Score=118.94 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=58.5
Q ss_pred CCCcccHHHHHHHCCChhhHHHHhhcCCCHH-HH--hcCChhhhccCCCCCCChhHHHHHHHHHHHHh
Q 004877 231 AVDVSPVVEFLHSLGLARYEEAFVREEIDWD-TL--QWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 231 ~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~-~l--~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
.+...+|.+||++|||++|.+.|.+++|+.. .+ ..|+++||++|||+.+|||+||+.+|+.|+..
T Consensus 9 ~~~~~~V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~~~ 76 (80)
T 2eam_A 9 RCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSG 76 (80)
T ss_dssp CCCCCCHHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSCCC
T ss_pred CCChhHHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 3566789999999999999999999999655 45 59999999999999999999999999998744
No 45
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=99.36 E-value=2.9e-13 Score=115.71 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=64.6
Q ss_pred CCCCcccHHHHHHHC--CChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 230 KAVDVSPVVEFLHSL--GLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 230 ~~~~~~~v~~wL~~l--gL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
..|+..+|.+||..+ ||++|.+.|.+++||+++|+.|+.+||++|||+.+|||++|+.+|+.||.+..
T Consensus 4 ~~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~~~~ 73 (78)
T 3bs7_A 4 YLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKTD 73 (78)
T ss_dssp GGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 468999999999997 99999999999999999999999999999999999999999999999998764
No 46
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=99.35 E-value=6.9e-13 Score=110.87 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=59.8
Q ss_pred cccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 234 VSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 234 ~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
..+|.+||++|+|++|.+.|.+.|+ +++.+..||.+||..|||+. ||||||+.+|+.+|.++.
T Consensus 4 d~sv~~WLd~i~m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~-ghqkkIl~siq~lr~~~~ 67 (69)
T 2y9u_A 4 DCSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQLHE 67 (69)
T ss_dssp CCBHHHHHHTTTCGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHcCChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCCh-hhHHHHHHhHHHHHhccc
Confidence 3579999999999999999999999 99999999999999999996 999999999999998864
No 47
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.34 E-value=4.6e-13 Score=118.11 Aligned_cols=68 Identities=25% Similarity=0.330 Sum_probs=64.4
Q ss_pred CCCCCcccHHHHHHHCCC--hhhHHHHhhcCCCHHHHhcCChhhhcc--CCCCCCChhHHHHHHHHHHHHhh
Q 004877 229 QKAVDVSPVVEFLHSLGL--ARYEEAFVREEIDWDTLQWLTEEDLIG--IGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 229 ~~~~~~~~v~~wL~~lgL--~~Y~~~F~~~~id~~~l~~Lt~~DL~~--lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
...|+..+|.+||+.+|| ++|.+.|.+|+||++.|+.||++||++ |||+.+|||+||+.+|+.||...
T Consensus 17 v~~Wt~~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~~ 88 (91)
T 1v85_A 17 VDKWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGP 88 (91)
T ss_dssp GGGCCHHHHHHHHHHHCGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSCC
T ss_pred cccCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 366999999999999999 999999999999999999999999998 99999999999999999999654
No 48
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=99.33 E-value=8.3e-13 Score=116.02 Aligned_cols=70 Identities=33% Similarity=0.537 Sum_probs=61.8
Q ss_pred CCCCCCcccHHHHHHHC-CChhhHHHHhhcCCCHHHHhcCChhhh-ccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 228 PQKAVDVSPVVEFLHSL-GLARYEEAFVREEIDWDTLQWLTEEDL-IGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 228 ~~~~~~~~~v~~wL~~l-gL~~Y~~~F~~~~id~~~l~~Lt~~DL-~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
+...|+...|.+||.++ ||++|.+.|.+++||+++|+.|+++|| ++||| .+|||+||+.+|+.|+.....
T Consensus 13 ~v~~Ws~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgI-klG~r~kI~~~I~~L~~~~~~ 84 (89)
T 1kw4_A 13 PISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGM-KLGPALKIVAKVESIKEVRDH 84 (89)
T ss_dssp CGGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCC-CHHHHHHHHHHHHHHC-----
T ss_pred CchhCCHHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhc
Confidence 34679999999999999 999999999999999999999999999 89999 599999999999999877653
No 49
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=99.32 E-value=2.6e-12 Score=114.53 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhcc--CCCCCCChhHHHHHHHHHHHHhhccc
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIG--IGVTALGPRKKILHTLCEIKKEYSRA 299 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~--lGI~~~G~RkkIl~aI~~l~~~~~~~ 299 (725)
..|+...|+.||+.+||++|++.| ++ ||+++|+.|+++||++ |||..+|||+||+.+|+.|++.....
T Consensus 18 ~~Ws~edV~~WL~~~Gl~~Y~~~F-~~-IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~~~~ 87 (97)
T 2d8c_A 18 VYWSPKKVADWLLENAMPEYCEPL-EH-FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHHME 87 (97)
T ss_dssp SSCCTTHHHHHHHHTTCTTTTTTT-TT-CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSCCC
T ss_pred hhCCHHHHHHHHHHcCCHHHHHHH-Hc-CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 669999999999999999999999 67 9999999999999999 99999999999999999999877554
No 50
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=99.32 E-value=6.5e-13 Score=120.38 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=65.5
Q ss_pred CCCCCcccHHHHHHHC--CChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 229 QKAVDVSPVVEFLHSL--GLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 229 ~~~~~~~~v~~wL~~l--gL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
...|+...|++||+++ ||++|.+.|.+++|++++|+.|+.+||++|||+.+|||++|+.+|+.||.+..
T Consensus 23 v~~Wt~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr~~~~ 93 (106)
T 3bs5_A 23 VYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKTD 93 (106)
T ss_dssp GGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3679999999999999 99999999999999999999999999999999999999999999999997764
No 51
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=112.62 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=62.9
Q ss_pred CCCcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 231 AVDVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 231 ~~~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
+....+|.+||++|+|++|.+.|.+.|+ +++.+..|+.+||..|||+. ||||||+.+|+.+|.++.-
T Consensus 3 ~~~~~SV~~WLd~i~m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~-gHqkkIl~siq~lr~~~~~ 70 (82)
T 2y9t_A 3 YPTDCSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQLHEF 70 (82)
T ss_dssp SCCSSBHHHHHHHHTCGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHcCchHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCCh-hhHHHHHhhHHHHHHHhcc
Confidence 3467789999999999999999999999 99999999999999999995 9999999999999999854
No 52
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.28 E-value=1.4e-12 Score=115.07 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=63.7
Q ss_pred CCCCCcccHHHHHHHC--CChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 229 QKAVDVSPVVEFLHSL--GLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 229 ~~~~~~~~v~~wL~~l--gL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
...|+...|++||+.+ +|.+| .|.+++|++++|+.|+++||++|||+.+|||++|+.+|+.|+..+..
T Consensus 11 v~~Wt~~~V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~~~~ 80 (91)
T 1wwv_A 11 VETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSR 80 (91)
T ss_dssp TTTCCTTTHHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHSC
T ss_pred cccCCHHHHHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHHhhc
Confidence 3669999999999977 79999 79999999999999999999999999999999999999999988854
No 53
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=99.28 E-value=6.7e-13 Score=119.68 Aligned_cols=65 Identities=28% Similarity=0.503 Sum_probs=56.1
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHH---hcCChhhhccCCCCCCChhHHHHHHHHHHHH
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTL---QWLTEEDLIGIGVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l---~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~ 294 (725)
..|...+|.+||.+|||++|.+.|.+++|++..+ ..|+++||++|||+.+|||+||+.+|+.++.
T Consensus 18 ~~w~~~~V~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L~~ 85 (103)
T 2ke7_A 18 PRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPK 85 (103)
T ss_dssp -----CCTTHHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHSCC
T ss_pred cCCCHhHHHHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHHHh
Confidence 3477889999999999999999999999976554 5999999999999999999999999999973
No 54
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=99.27 E-value=8.9e-13 Score=118.34 Aligned_cols=63 Identities=30% Similarity=0.437 Sum_probs=57.8
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCCC-HHHHh--cCChhhhccCCCCCCChhHHHHHHHHHHHHh
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEID-WDTLQ--WLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~--~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
...+|.+||++|||++|.+.|.+++|+ ++.|. .||++||++|||+.+||||||+.+|+.|+..
T Consensus 28 ~~~~V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L~~~ 93 (101)
T 2lmr_A 28 LEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKV 93 (101)
T ss_dssp SSCCHHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999995 77887 8999999999999999999999999998754
No 55
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=99.25 E-value=6.3e-12 Score=109.27 Aligned_cols=63 Identities=30% Similarity=0.462 Sum_probs=58.0
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
...+|.+||++|+|.+|.+.|.. ++++.++.||++||.++||+++|||+||+.+|+.+|....
T Consensus 17 ~~~~V~~WL~sLrLhKY~~~F~~--~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~~~~ 79 (88)
T 2d3d_A 17 LLKNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKE 79 (88)
T ss_dssp HHTCHHHHHHHTTCGGGHHHHTT--SCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHcccchhHHHHhc--CCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHHHHh
Confidence 34679999999999999999964 7999999999999999999999999999999999997654
No 56
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=99.24 E-value=1.8e-12 Score=111.02 Aligned_cols=63 Identities=25% Similarity=0.491 Sum_probs=57.2
Q ss_pred ccHHHHHHHCCChhhHHHHhhcCCCH-HHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 235 SPVVEFLHSLGLARYEEAFVREEIDW-DTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 235 ~~v~~wL~~lgL~~Y~~~F~~~~id~-~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
..|++||.++|+++|.+.|.+|+|++ +.|+.|..++|++|||+.+|||.||+.+|+.||.+..
T Consensus 16 ~~v~~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~Lr~~~~ 79 (85)
T 1ow5_A 16 PFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKR 79 (85)
T ss_dssp CHHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHHHHHHh
Confidence 37999999999999999999999977 9999999999999999999999999999999987654
No 57
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.23 E-value=6.7e-11 Score=128.10 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=89.8
Q ss_pred CCccEEEeccCchhhhC--Chhhh---cC-CceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEecccC-
Q 004877 413 GDCSHWFLTHFHMDHYQ--GLTRS---FH-HGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEANHC- 485 (725)
Q Consensus 413 ~~idaIfLTHaH~DHig--GLp~~---~~-~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~agH~- 485 (725)
.++++|||||.|.||++ ++..+ +. ..+||++..+.+.+.. ++++...+..+..++.+.+++++|+++++.|.
T Consensus 108 ~~id~VliTH~H~DHig~~~l~~l~~~~~~~~~v~~p~~~~~~l~~-~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~H~~ 186 (360)
T 2wyl_A 108 RQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIG-WGVPKERCIVVKPGDVVKVKDIEIHALDAFDRT 186 (360)
T ss_dssp CCCSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHHH-HTCCGGGEEECCTTCEEEETTEEEEEEECCCC-
T ss_pred CCCCEEEECCCchhcCCHHHHHHHHhcCCCCCEEEEcHHHHHHHHH-cCCChheEEEcCCCCEEEECCEEEEEEeccCcc
Confidence 46899999999999995 23322 22 5799999999888764 45543467889999999999999999999774
Q ss_pred -----------C---------CCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCC
Q 004877 486 -----------P---------GSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTY 533 (725)
Q Consensus 486 -----------p---------GS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy 533 (725)
+ ++++|+|+. +|++|+|+||+.+.+.+.... ...++|++++....
T Consensus 187 ~~~~~~~~~h~~g~~~~~~~~~~~g~~i~~-~g~~i~~sGDt~~~~~~~~i~--~~~~~Dv~il~~g~ 251 (360)
T 2wyl_A 187 ALITLPADQKAAGVLPDGMDDRAVNYLFKT-PGGSLYHSGDSHYSNYYAKHG--NEHQIDVALGSYGE 251 (360)
T ss_dssp -----------------CCTTTBEEEEEEE-TTEEEEECTTCCCCTTHHHHH--HHSCCCEEEEEBCC
T ss_pred cccccccccccccccccccCcccEEEEEEE-CCcEEEEeCCCCcCHHHHHHh--hCCCCCEEEecCCC
Confidence 2 378999996 688999999999887654321 12378999997653
No 58
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=99.22 E-value=7.1e-11 Score=128.96 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=90.2
Q ss_pred CCccEEEeccCchhhhC--Chhhh---cC-CceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEecccC-
Q 004877 413 GDCSHWFLTHFHMDHYQ--GLTRS---FH-HGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEANHC- 485 (725)
Q Consensus 413 ~~idaIfLTHaH~DHig--GLp~~---~~-~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~agH~- 485 (725)
.++++|||||.|.||++ ++..+ +. ..+||++..+.+.+.. ++++...+..+..++.+.+++++|+++++.|.
T Consensus 132 ~~iD~IliTH~H~DHig~~~l~~l~~~~~~~~~v~~~~~~~~~l~~-~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~H~~ 210 (379)
T 3bv6_A 132 KEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLG-WGVPQERCIVAKVGDVLEIGDVKIRVLDSFDRT 210 (379)
T ss_dssp CCCSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHHH-HTCCGGGEEECCTTCEEEETTEEEEEEECCCHH
T ss_pred CCCCEEEECCCCcccCChHHHHHHHhcCCCCcEEEecHHHHHHHHH-cCCChhhEEEeCCCCEEEECCEEEEEEeccccc
Confidence 36899999999999995 33322 22 6899999999888764 45543467889999999999999999999883
Q ss_pred ------------CC---------CeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCC
Q 004877 486 ------------PG---------SIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTY 533 (725)
Q Consensus 486 ------------pG---------S~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy 533 (725)
+| +++|+|+. +|++|+|+||+.+...+.... ...++|++++....
T Consensus 211 ~~~~~p~~h~~~~G~~~~~~~~~~~g~~i~~-~g~~i~~sGDt~~~~~~~~i~--~~~~~Dv~il~~g~ 276 (379)
T 3bv6_A 211 ALVTLPKGVSSYDKAILDGMDERAVNYLIET-SGGSVYHSGDSHYSNYYAKHG--NDYQIDVALLSYGE 276 (379)
T ss_dssp HHTCCCTTSCSSCGGGGGCHHHHBEEEEEEE-TTEEEEECTTCCCCTTHHHHH--HHSCCSEEEEEBCC
T ss_pred ccccccccccccccccccccCCceEEEEEEe-CCeEEEEeCCCCccHHHHHHh--hcCCCCEEEecCCC
Confidence 22 79999986 788999999999887654321 12378999997653
No 59
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=99.18 E-value=9.2e-11 Score=120.89 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=76.3
Q ss_pred CccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCC-----------------CCcceEEec-CCCEEEEC-C
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGI-----------------PWDRLQVLP-LNQKTTIA-G 474 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~-----------------~~~~~~~l~-~ge~~~Ig-g 474 (725)
+|++|||||.|.||++|++.+ ...+||+++.+...+...... ....+..+. .++.+.++ +
T Consensus 103 ~i~~VilTH~H~DH~gg~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 181 (276)
T 2r2d_A 103 DISTVVLSHLHNDHAGCVEYF-GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAPG 181 (276)
T ss_dssp GCSEEECSCCSTTTSTTGGGC-SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEETT
T ss_pred HCCEEEecCcccccCCChhhC-CCCEEEECHHHHHHHhccccccccccccchHHhhhhccccccceeccCCCceeEecCC
Confidence 589999999999999999965 668999999888766532110 012355666 47888885 7
Q ss_pred EEEEEE-ecccCCCCeEEEEeccCCeEEEEecccCCChhh
Q 004877 475 IDVTCL-EANHCPGSIIILFEPQNGKAVLHTGDFRFSEEM 513 (725)
Q Consensus 475 v~Vt~~-~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~ 513 (725)
++|..+ + ||++|+++|+++..++.+++|+||+.+....
T Consensus 182 ~~v~~~~p-gHt~g~~~~~~~~~~~~~vl~~GD~~~~~~~ 220 (276)
T 2r2d_A 182 VNLLNFGT-GHASGMLGLAVRLEKQPGFLLVSDACYTATN 220 (276)
T ss_dssp EEEEEEES-SSSSSEEEEEEECSSSCEEEEEETTSCCHHH
T ss_pred EEEEeCCC-CCCceeEEEEEEcCCCceEEEEechhhhHHH
Confidence 999988 6 9999999999986332679999999987653
No 60
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=99.18 E-value=1.5e-11 Score=117.98 Aligned_cols=63 Identities=29% Similarity=0.432 Sum_probs=59.0
Q ss_pred cccHHHHHHHCCChhhHHHHhhcCCC-HHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhh
Q 004877 234 VSPVVEFLHSLGLARYEEAFVREEID-WDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 234 ~~~v~~wL~~lgL~~Y~~~F~~~~id-~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
..+|.+||++|||++|.+.|.+++|+ ++.+..||++||++|||+.+|||+||+.+|+.++.-.
T Consensus 79 p~~v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~~~ 142 (149)
T 3sei_A 79 PANLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELR 142 (149)
T ss_dssp CSCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999996 9999999999999999999999999999999997654
No 61
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=99.15 E-value=1.8e-11 Score=108.51 Aligned_cols=63 Identities=30% Similarity=0.462 Sum_probs=58.1
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
...+|.+||++|+|.+|.+.|.. ++++.|+.||++||.++||+++|+|+||+.+|+.+|....
T Consensus 30 ~~~dV~~WLksLrLhKY~~~F~~--~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr~~k~ 92 (101)
T 2es6_A 30 LLKNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKE 92 (101)
T ss_dssp HHTCHHHHHHTTTCCCTHHHHTT--SCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHccCcchHHHHcc--CCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999955 6999999999999999999999999999999999997654
No 62
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=99.15 E-value=9.3e-12 Score=119.41 Aligned_cols=63 Identities=32% Similarity=0.468 Sum_probs=59.7
Q ss_pred CCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHH
Q 004877 232 VDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~ 294 (725)
.++.+|++||++|||++|.+.|.+++||++.|..|+++||++|||+.+||||||+.+|+.++.
T Consensus 8 ~~~~~V~~WL~~lgL~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L~~ 70 (149)
T 3sei_A 8 KSSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSI 70 (149)
T ss_dssp HHHHHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHCCcHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999999999999998864
No 63
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=99.14 E-value=1.4e-10 Score=120.41 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=86.5
Q ss_pred cCCCCceEeCCccc---------c------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhC----
Q 004877 397 CVPGTPFRVDAFKY---------L------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIG---- 455 (725)
Q Consensus 397 ~ipg~~~~ID~f~~---------~------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg---- 455 (725)
..++..+.||+... + ..+|++||+||.|.||++|++.+. ...+||+++.+...+.....
T Consensus 61 ~~~~~~iLID~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 140 (294)
T 3m8t_A 61 KTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGGYYPGDE 140 (294)
T ss_dssp EETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCCHHHHTTHHHHHHHHCCEEEEEGGGHHHHHHTCBTTBT
T ss_pred EECCceEEEECCCchhHHHHHHHHHHcCCCHHHCcEEEECCCCccccccHHHHhhccCCEEEEChHHHHHHhcccccCcc
Confidence 34556788998742 0 125899999999999999999643 35899999999998875411
Q ss_pred ------C-CCcceEEecCCCEEEECCEEEEEEec-ccCCCCeEEEEeccCC---eEEEEecccCCC
Q 004877 456 ------I-PWDRLQVLPLNQKTTIAGIDVTCLEA-NHCPGSIIILFEPQNG---KAVLHTGDFRFS 510 (725)
Q Consensus 456 ------~-~~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~G---k~IlYTGD~~~~ 510 (725)
. +......+..++.+.+++++|+++.+ ||++|+++|+++..++ .+++|+||+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g~~~~~~~~~~~~~~~~~lf~GD~~~~ 206 (294)
T 3m8t_A 141 KNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVA 206 (294)
T ss_dssp TCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCT
T ss_pred ccccCCCCCCCCceEeCCCCEEEeCCEEEEEEeCCCCCccCEEEEEEccCCCccceEEEEcCccCC
Confidence 0 11123568889999999999999986 8999999999985333 269999999843
No 64
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=99.13 E-value=2.3e-10 Score=115.90 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=80.7
Q ss_pred cccCCCCceEeCCccc---c---CCCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCCCCcceEEecCCC
Q 004877 395 WCCVPGTPFRVDAFKY---L---RGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQ 468 (725)
Q Consensus 395 ~~~ipg~~~~ID~f~~---~---~~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge 468 (725)
+....|..+.||++.. . ..++++|||||.|.||++ ++.+....++| ....
T Consensus 24 li~~~~~~iLiD~g~~~~~~~~~~~~id~VliTH~H~DH~~-~~~l~~~~~vi-----------------------~~~g 79 (220)
T 1vjn_A 24 ALEMEGKTIVTDPFDESVGYPIPNVTADVVTESHQHFDHNA-HHLVKGNFRVI-----------------------DRPG 79 (220)
T ss_dssp EEEETTEEEEESCCC-----CCCCCBCSEEECSSCC---CG-GGGCBSSCEEE-----------------------CSSE
T ss_pred EEEECCEEEEEcCCCCcCCCCcCCCCcCEEEECCCCCCCCC-chHhcCCCEEE-----------------------cCCC
Confidence 3445677788888642 1 257899999999999998 76433233333 1123
Q ss_pred EEEECCEEEEEEecccCCC-------CeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCCCCC
Q 004877 469 KTTIAGIDVTCLEANHCPG-------SIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDFP 541 (725)
Q Consensus 469 ~~~Iggv~Vt~~~agH~pG-------S~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~~~p 541 (725)
.+++++++|+++++.|..+ +++|+|+. +|++|+|+||+.+.+...... ...++|++++++.. +.+.
T Consensus 80 ~~~~~~~~I~~~~~~H~~~~g~~~g~~~g~~i~~-~g~~i~~~GDt~~~~~~~~~~--~~~~~Dvlil~~g~----~~h~ 152 (220)
T 1vjn_A 80 AYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEG-EGIKVCHLGDLGHVLTPAQVE--EIGEIDVLLVPVGG----TYTI 152 (220)
T ss_dssp EEEETTEEEEEEEEEEC-------CEEEEEEEEE-TTEEEEECTTCCSCCCHHHHH--HHCCCSEEEEECCS----SSSC
T ss_pred eEEECCEEEEEEeeecCCCCCccCCCcEEEEEEE-CCeEEEEeCCCCCcchHHHHH--hhCCCCEEEEcCCC----cCcC
Confidence 6788999999999999752 58999996 788999999999876421111 12479999999952 2355
Q ss_pred CHHHHH
Q 004877 542 KQEAVI 547 (725)
Q Consensus 542 ~~~e~~ 547 (725)
+.+++.
T Consensus 153 ~~~~a~ 158 (220)
T 1vjn_A 153 GPKEAK 158 (220)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 554443
No 65
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.2e-11 Score=110.42 Aligned_cols=63 Identities=30% Similarity=0.469 Sum_probs=58.2
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
...+|.+||++|+|.+|.+.| ++++++.|+.|+++||++|||+++|+|+||+.+|+.+++...
T Consensus 48 ~~~dV~~WL~sLrL~KY~~~F--~~~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~Lr~~k~ 110 (119)
T 2b6g_A 48 LLKNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKE 110 (119)
T ss_dssp HHHCHHHHHHHHTCHHHHHHH--TTSCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHCCChhHHHHH--ccCCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHHHHhhhc
Confidence 456788999999999999999 568999999999999999999999999999999999987653
No 66
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=99.12 E-value=2.9e-10 Score=115.91 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=73.7
Q ss_pred CccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCC------CCcceEEecCCCEEEECCEEEEEEecccCCC
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGI------PWDRLQVLPLNQKTTIAGIDVTCLEANHCPG 487 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~------~~~~~~~l~~ge~~~Iggv~Vt~~~agH~pG 487 (725)
+|++||+||+|.||++|++.+ .+.+||+++.+.+.+...... +..... +..++...+++++|...+ ||++|
T Consensus 100 ~I~~VilTH~H~DH~gg~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~p-GHt~g 176 (254)
T 3dha_A 100 DLLYIISSHLHFDHAGGNGAF-TNTPIIVQRTEYEAALHREEYMKECILPHLNYK-IIEGDYEVVPGVQLLYTP-GHSPG 176 (254)
T ss_dssp GCSEEECSCCSHHHHTTGGGC-SSSCEEEEHHHHHHHHHCTTSCGGGSCTTSCEE-EECSSEEEETTEEEEECC-SSSTT
T ss_pred HCCEEEcCCChhhcCCChHHC-CCCEEEECHHHHHHhhccccccccccCcccceE-EecCCccccCCEEEEECC-CCCCC
Confidence 489999999999999999964 468999999998887643211 111222 334566677887776555 99999
Q ss_pred CeEEEEeccCCeEEEEecccCCChhhh
Q 004877 488 SIIILFEPQNGKAVLHTGDFRFSEEMA 514 (725)
Q Consensus 488 S~~flIe~~~Gk~IlYTGD~~~~~~~~ 514 (725)
+++|+++..++++++|+||+.+.....
T Consensus 177 ~~~~~~~~~~~~~vl~~GD~~~~~~~~ 203 (254)
T 3dha_A 177 HQSLFIETEQSGSVLLTIDASYTKENF 203 (254)
T ss_dssp CEEEEEEETTTEEEEEEETTCSSHHHH
T ss_pred CEEEEEEeCCCCEEEEEecccchhhhc
Confidence 999999864467899999999876643
No 67
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=99.12 E-value=1.8e-10 Score=118.33 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=83.9
Q ss_pred CCCceEeCCccc---------c------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHH------hC
Q 004877 399 PGTPFRVDAFKY---------L------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMK------IG 455 (725)
Q Consensus 399 pg~~~~ID~f~~---------~------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~------lg 455 (725)
++..+.||+... + ..+|++||+||.|.||++|++.+. ..++||+++.+...+... ++
T Consensus 33 ~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 112 (263)
T 1k07_A 33 PRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYA 112 (263)
T ss_dssp TTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHHCCEEEEEHHHHHHHHTTTTTCTTTT
T ss_pred CCceEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEeCCCCccccccHHHHHHhcCCEEEEcHHHHHHHhcccccccccC
Confidence 445678888742 0 125899999999999999998543 257999999999887642 11
Q ss_pred C-------CCcceEEecCCCEEEECCEEEEEEec-ccCCCCeEEEEecc-CC--eEEEEecccCC
Q 004877 456 I-------PWDRLQVLPLNQKTTIAGIDVTCLEA-NHCPGSIIILFEPQ-NG--KAVLHTGDFRF 509 (725)
Q Consensus 456 ~-------~~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~-~G--k~IlYTGD~~~ 509 (725)
. +......+..++.+.+++++|+++.+ ||++|+++|+++.. .| .+++|+||+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~~lf~GD~~~ 177 (263)
T 1k07_A 113 NDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGV 177 (263)
T ss_dssp TCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEEECCCCC
T ss_pred ccccccCCCCCcceEeCCCCEEEECCeEEEEEECCCCCCCcEEEEEecccCCceeEEEEECCccc
Confidence 1 11234567889999999999999887 89999999999852 24 36999999865
No 68
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.11 E-value=2.4e-10 Score=124.31 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=86.1
Q ss_pred CCCceEeCCccc------------c--CCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcce
Q 004877 399 PGTPFRVDAFKY------------L--RGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRL 461 (725)
Q Consensus 399 pg~~~~ID~f~~------------~--~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~ 461 (725)
.+..+.||+... . ..++++||+||.|.||++|++.+ ++..+||+++.+...+...++.+...+
T Consensus 42 ~~~~iliD~G~~~~~~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 121 (402)
T 1e5d_A 42 DEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSSLGQKAMESHFHYKDWPV 121 (402)
T ss_dssp SSSCEEECCCCGGGHHHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHCCSEEEEEHHHHHHHHHHHCCSSCCE
T ss_pred CCCEEEEeCCCCccHHHHHHHHHHhCCcccCCEEEeCCCCccccccHHHHHHHCCCCEEEEChHHHHHHHHHhCCCCCce
Confidence 345577887643 1 24689999999999999999854 346899999999999887776543456
Q ss_pred EEecCCCEEEECCEEEEEEec--ccCCCCeEEEEeccCCeEEEEecccC
Q 004877 462 QVLPLNQKTTIAGIDVTCLEA--NHCPGSIIILFEPQNGKAVLHTGDFR 508 (725)
Q Consensus 462 ~~l~~ge~~~Iggv~Vt~~~a--gH~pGS~~flIe~~~Gk~IlYTGD~~ 508 (725)
..+..++.+.+++++|+++++ ||++|+++|++. ++ +++|+||+.
T Consensus 122 ~~~~~g~~~~~g~~~~~~~~~p~gH~~~~~~~~~~--~~-~~l~~GD~~ 167 (402)
T 1e5d_A 122 QVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFA--DE-KVLISNDIF 167 (402)
T ss_dssp EEECTTCEEECSSCEEEEEECTTSSSTTCEEEEET--TT-TEEEEETTT
T ss_pred EEcCCCCEEEECCCEEEEEeCCCCCCCCcEEEEEC--CC-CEEEecccc
Confidence 788999999999999999988 599999998875 23 499999994
No 69
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.10 E-value=4.8e-10 Score=121.70 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=85.5
Q ss_pred CCCceEeCCccc--------------cCCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcce
Q 004877 399 PGTPFRVDAFKY--------------LRGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRL 461 (725)
Q Consensus 399 pg~~~~ID~f~~--------------~~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~ 461 (725)
.+..+.||+... ...++++||+||.|.||++|++.+ ++..+||+++.+...+...++.+...+
T Consensus 43 ~~~~iliD~g~~~~~~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 122 (398)
T 1ycg_A 43 DDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNY 122 (398)
T ss_dssp SSSCEEECCCCGGGHHHHHHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHHCTTCEEEECHHHHHHHHHHTCSCCCEE
T ss_pred CCCEEEEeCCCcccHHHHHHHHHHhcCcccCCEEEeCCCCcchhhhHHHHHHHCCCCEEEEcHHHHHHHHHHhCCCCcce
Confidence 344678888753 135789999999999999999853 446899999999998887766543356
Q ss_pred EEecCCCEEEECCEEEEEEec--ccCCCCeEEEEeccCCeEEEEecccC
Q 004877 462 QVLPLNQKTTIAGIDVTCLEA--NHCPGSIIILFEPQNGKAVLHTGDFR 508 (725)
Q Consensus 462 ~~l~~ge~~~Iggv~Vt~~~a--gH~pGS~~flIe~~~Gk~IlYTGD~~ 508 (725)
..+..++.+.+++.+|+++++ ||++|+++|++. ++ +++|+||+.
T Consensus 123 ~~~~~g~~~~~g~~~~~~~~~p~gH~~~~~~~~~~--~~-~~lf~GD~~ 168 (398)
T 1ycg_A 123 TIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVP--EE-ALLLPNDAF 168 (398)
T ss_dssp EECCTTCEEECSSCEEEEEECTTSSSTTCEEEEET--TT-TEEEEETTT
T ss_pred EEeCCCCEEeeCCcEEEEEeCCCCCCCCcEEEEEC--CC-cEEEecccc
Confidence 778889999999999999876 599999998874 23 499999994
No 70
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=99.10 E-value=1.8e-10 Score=118.88 Aligned_cols=105 Identities=12% Similarity=0.041 Sum_probs=84.3
Q ss_pred CCceEeCCcccc--------------CCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcceE
Q 004877 400 GTPFRVDAFKYL--------------RGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRLQ 462 (725)
Q Consensus 400 g~~~~ID~f~~~--------------~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~~ 462 (725)
+..+.||+.... ..+|++||+||.|.||++|+..+ +...+||+++.+...+...++.......
T Consensus 51 ~~~iLID~G~~~~~~~~~~~l~~~~~~~~i~~IilTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 130 (262)
T 3hnn_A 51 DKTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAPQITFVCSLPAAGDLRAAFPDDNLNIL 130 (262)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHHSCGGGEEEEECSSCCGGGHHHHHHHHHHCTTCEEEECHHHHHHHHHHSSSSCCEEE
T ss_pred CCEEEEECCCcchHHHHHHHHHHhCChhhCCEEEECCCCcchhchHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCCceE
Confidence 456788887421 24789999999999999999853 4578999999999988876664334567
Q ss_pred EecCCCEEEEC-CEEEEEEec-c-cCCCCeEEEEeccCCeEEEEeccc
Q 004877 463 VLPLNQKTTIA-GIDVTCLEA-N-HCPGSIIILFEPQNGKAVLHTGDF 507 (725)
Q Consensus 463 ~l~~ge~~~Ig-gv~Vt~~~a-g-H~pGS~~flIe~~~Gk~IlYTGD~ 507 (725)
.+..++.+.++ +.+++++.+ | |++|++++++.. . +++||||+
T Consensus 131 ~~~~g~~l~lg~~~~~~~i~tpg~Ht~g~~~~~~~~--~-~~lfsGD~ 175 (262)
T 3hnn_A 131 PMRGKETLDLGKGHVLKFLPIPSPRWPAGLCTYDVQ--T-QILYTDKI 175 (262)
T ss_dssp ECCSSCEEECSTTCEEEEEECCCSSCTTCEEEEETT--T-TEEEEETT
T ss_pred EeCCCCEEEcCCCcEEEEEECCCCCCCCeeEEEeCC--C-CEEEEeec
Confidence 88899999998 888888888 6 999999888753 2 39999999
No 71
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.09 E-value=1.5e-10 Score=118.11 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=77.3
Q ss_pred CCceEeCCcccc-------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHH------------------
Q 004877 400 GTPFRVDAFKYL-------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNM------------------ 452 (725)
Q Consensus 400 g~~~~ID~f~~~-------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~------------------ 452 (725)
+..+.||+.... ..++++||+||.|.||++|++.+. ...+||+++.+...+..
T Consensus 29 ~~~iLiD~G~~~~~~~l~~~~~i~~vi~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 108 (261)
T 3adr_A 29 KLTVMIDAGVSNSIADFSFLDKLDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDL 108 (261)
T ss_dssp SCEEEECCCCTTCCCCCTTCSCCCEEECSCCSGGGTTTHHHHHHHSCCEEEEETTCTHHHHSHHHHHHHHHHHHHHHTHH
T ss_pred CcEEEEeCCCCCChhhcCCCCCCcEEEECCCCccccCCHHHHHHHhCCeEEECHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 344566665321 357899999999999999998532 26799998866543321
Q ss_pred --HhCC---C--CcceEEecCCCEEEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 453 --KIGI---P--WDRLQVLPLNQKTTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 453 --~lg~---~--~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
.++. + ...+..+..++.+.+++++|+++++ ||++|+++|+++ +++|+||+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pGHt~~~~~~~~~-----~~lf~GD~~~~ 169 (261)
T 3adr_A 109 YYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIYTPGHARHHMSVLVD-----DFLFTGDSAGA 169 (261)
T ss_dssp HHHHCCCCSCCCGGGEEEECSCCEEECSSSEEEEEECTTSCTTCEEEEET-----TEEEEETSSCE
T ss_pred HHHhcccccCCCccceEecCCCCEEEECCEEEEEEECCCCCCccEEEEEC-----CEEEEcCcccc
Confidence 1221 1 1245678889999999999999988 699999999753 39999999764
No 72
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.09 E-value=3.4e-10 Score=123.11 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=84.8
Q ss_pred CCceEeCCccc-----------------cCCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCC-C
Q 004877 400 GTPFRVDAFKY-----------------LRGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIP-W 458 (725)
Q Consensus 400 g~~~~ID~f~~-----------------~~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~-~ 458 (725)
+..+.||+... ...++++||+||.|.||++|++.+ ++..+||+++.+.+.+...++.+ .
T Consensus 44 ~~~iLiD~g~~~~~~~~~~~l~~~~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~~ 123 (404)
T 2ohh_A 44 EGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLRE 123 (404)
T ss_dssp SCEEEECCCCTTCHHHHHHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHHSTTCCEEECHHHHHHHHHHCGGGGG
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHhccCCccCCCEEEeCCCCCcccchHHHHHHHCCCCEEEECHHHHHHHHHHhccccc
Confidence 33578887753 235789999999999999999853 44689999999999887665433 1
Q ss_pred cceEEecCCCEEEECCEEEEEEec--ccCCCCeEEEEeccCCeEEEEecccC
Q 004877 459 DRLQVLPLNQKTTIAGIDVTCLEA--NHCPGSIIILFEPQNGKAVLHTGDFR 508 (725)
Q Consensus 459 ~~~~~l~~ge~~~Iggv~Vt~~~a--gH~pGS~~flIe~~~Gk~IlYTGD~~ 508 (725)
..+..+..++.+.+++.+|+++++ ||++|+++|+++. + +++|+||+.
T Consensus 124 ~~~~~~~~g~~~~~g~~~i~~~~~p~gH~~~~~~~~~~~--~-~~lf~GD~~ 172 (404)
T 2ohh_A 124 AEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDE--D-GILFSNDAF 172 (404)
T ss_dssp SCEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEEET--T-TEEECTTTT
T ss_pred CCceEcCCCCEEEECCEEEEEEeCCCCCCCCceEEEECC--C-cEEEecCcc
Confidence 246778889999999999999998 5999999999863 3 399999985
No 73
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=99.07 E-value=3.7e-10 Score=112.38 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=83.6
Q ss_pred CCCceEeCCccc--------------cCCCccEEEeccCchhhhCChhhhc-CCceEEeCHHHHHHHHHHhCCCCcceEE
Q 004877 399 PGTPFRVDAFKY--------------LRGDCSHWFLTHFHMDHYQGLTRSF-HHGKIYCSLITARLVNMKIGIPWDRLQV 463 (725)
Q Consensus 399 pg~~~~ID~f~~--------------~~~~idaIfLTHaH~DHigGLp~~~-~~~pIY~s~~T~~ll~~~lg~~~~~~~~ 463 (725)
.+..+.||+... ...++++||+||.|.||++|++.+. ...+||+++.+.+.+.... .. .....
T Consensus 39 ~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~-~~-~~~~~ 116 (219)
T 3l6n_A 39 KKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNKGIKTYATAKTNEFLKKDG-KA-TSTEI 116 (219)
T ss_dssp TTEEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHHTTCEEEECHHHHHHHHHTT-CC-CCSEE
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHHhcCCceeEEEecCCCcccccCHHHHHhCCCEEEEcHHHHHHHHhcC-CC-CCcEe
Confidence 455678888732 1247899999999999999999543 2689999999998887542 21 23567
Q ss_pred ecCCCEEEECCEEEEEEe--cccCCCCeEEEEeccCCeEEEEecccCC
Q 004877 464 LPLNQKTTIAGIDVTCLE--ANHCPGSIIILFEPQNGKAVLHTGDFRF 509 (725)
Q Consensus 464 l~~ge~~~Iggv~Vt~~~--agH~pGS~~flIe~~~Gk~IlYTGD~~~ 509 (725)
+..++.+.+++++|+++. .||++|+++|++.. + +++|+||+-+
T Consensus 117 ~~~g~~~~~g~~~i~~~~~~pgHt~g~~~~~~~~--~-~~lf~GD~~~ 161 (219)
T 3l6n_A 117 IKTGKPYRIGGEEFVVDFLGEGHTADNVVVWFPK--Y-NVLDGGCLVK 161 (219)
T ss_dssp CCTTSEEEETTEEEEEECCCCSSSSSCCEEEETT--T-TEEEEETTSC
T ss_pred cCCCCEEEECCEEEEEEeCCCCCCCCCEEEEECC--C-CEEEECCeee
Confidence 888999999999999997 49999999999863 3 3999999876
No 74
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=99.02 E-value=2.4e-10 Score=113.16 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=80.4
Q ss_pred CCceEeCCcccc----------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHH-------HhCCC---
Q 004877 400 GTPFRVDAFKYL----------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNM-------KIGIP--- 457 (725)
Q Consensus 400 g~~~~ID~f~~~----------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~-------~lg~~--- 457 (725)
+..+.||+.... ..++++||+||.|.||++|++.+. ...+||+++.+.+.+.. .++.+
T Consensus 24 ~~~iLiD~G~~~~~l~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T 2xf4_A 24 RLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQ 103 (210)
T ss_dssp CEEEEECCCSCHHHHHHHHHHHTCEEEEEECSCSCHHHHTTHHHHHHHHTCCEECCCGGGHHHHHTHHHHHHHTTCCCCC
T ss_pred CcEEEEcCCCCHHHHHHHHHHcCCceeEEEECCCChhhhcCHHHHHHHcCCcEEEecchHHHHhccchhhhhhcCCcccC
Confidence 455778886321 125899999999999999998543 25799999888766543 23322
Q ss_pred -CcceEEecCCCEEEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCCh
Q 004877 458 -WDRLQVLPLNQKTTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFSE 511 (725)
Q Consensus 458 -~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~~ 511 (725)
......+..++.+.+++.+|+++.+ ||++|+++|+++ +.+++|+||+.+..
T Consensus 104 ~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g~~~~~~~---~~~~lf~GD~~~~~ 156 (210)
T 2xf4_A 104 PLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDE---QSQLLISGDVIFKG 156 (210)
T ss_dssp CCCCSBCCCTTCEEEETTEEEEEEECCSSSTTCEEEEET---TTTEEEEETSEETT
T ss_pred CCCCceEECCCCEEEECCeEEEEEECCCCCCCcEEEEeC---CCCEEEECCEeccC
Confidence 1123457788999999999999987 899999999985 23499999997653
No 75
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=99.02 E-value=5.2e-11 Score=114.03 Aligned_cols=63 Identities=29% Similarity=0.539 Sum_probs=56.7
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCCCH-HHHh--cCChhhhccCCCCCCChhHHHHHHHHHHHHh
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEIDW-DTLQ--WLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~id~-~~l~--~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
...+|.+||++|||++|.+.|.+++||+ +.+. .||++||++|||+.+||||||+.+|+.++..
T Consensus 13 ~~~~V~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L~~~ 78 (148)
T 2kiv_A 13 SVQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM 78 (148)
T ss_dssp -CCBHHHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHCSCC
T ss_pred CcchHHHHHHHCCCHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence 4567999999999999999999999977 4555 8999999999999999999999999999754
No 76
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=99.02 E-value=1.5e-09 Score=112.88 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=84.4
Q ss_pred cCCCCceEeCCccc---------c------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhC----
Q 004877 397 CVPGTPFRVDAFKY---------L------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIG---- 455 (725)
Q Consensus 397 ~ipg~~~~ID~f~~---------~------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg---- 455 (725)
...+..+.||++.. + ..+|++||+||.|.||++|+..+. ...+||+++.+..++.....
T Consensus 64 ~~~~~~iLiD~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~l~~~~~~~~~ 143 (303)
T 4ax1_B 64 TSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRGLPDRTD 143 (303)
T ss_dssp CCTTCEEEECCBSTTCHHHHHHHHHHTTCCGGGEEEEECSCSSHHHHTTHHHHHHHHCCCEEEEHHHHHHHHHTSCCTTS
T ss_pred EeCCcEEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEcCCCCccccCCHHHHHhhcCCEEEEcHHHHHHHhccccCccc
Confidence 34666789998741 1 124899999999999999999543 25899999999998875421
Q ss_pred --------C-CCcceEEecCCCEEEECCEEEEEEec-ccCCCCeEEEEeccCCe--EEEEecccCCC
Q 004877 456 --------I-PWDRLQVLPLNQKTTIAGIDVTCLEA-NHCPGSIIILFEPQNGK--AVLHTGDFRFS 510 (725)
Q Consensus 456 --------~-~~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk--~IlYTGD~~~~ 510 (725)
. .......+..++.+.+++++|+++.+ ||++|+++|+++..++. ..+++||+-+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~~~~~~~l~gD~l~~ 210 (303)
T 4ax1_B 144 PNFEVAEPVAPVANIVTLADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLTA 210 (303)
T ss_dssp TTGGGCCCCCCCSCEEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCC
T ss_pred cccccccCcCCCCCcEEeCCCCEEEECCeEEEEEeCCCCCccceEEEEEecCCCceeEEEEeCCccc
Confidence 0 11245778899999999999999986 89999999999752211 13555998763
No 77
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.01 E-value=4.1e-10 Score=116.94 Aligned_cols=95 Identities=23% Similarity=0.282 Sum_probs=67.2
Q ss_pred CccEEEeccCchhhhCChhhh-----cCCceEEeCHHHHHHHHHHhC-----C---CC----cceEEecCCCEEEE-CCE
Q 004877 414 DCSHWFLTHFHMDHYQGLTRS-----FHHGKIYCSLITARLVNMKIG-----I---PW----DRLQVLPLNQKTTI-AGI 475 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~-----~~~~pIY~s~~T~~ll~~~lg-----~---~~----~~~~~l~~ge~~~I-ggv 475 (725)
+|++|||||+|.||++|++.+ |.+.+||+++.+..++..... . .+ ..+..+. +...+ +++
T Consensus 100 ~Id~IllTH~H~DHigg~~~l~~~~~fp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~gi 177 (280)
T 3esh_A 100 DIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFE--KHFEPVPGI 177 (280)
T ss_dssp SCCEEECSCCCHHHHGGGSCTTSCCSSTTCEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEES--SEECSSTTE
T ss_pred HCCEEEeCCCcccccCcccccccccCCCCCEEEECHHHHHHhhCcccccccchhhhhhhhhhheEEEeC--CCCeEcCCE
Confidence 688999999999999999843 346899999999887763110 0 00 1122232 22333 344
Q ss_pred EEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCChhh
Q 004877 476 DVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFSEEM 513 (725)
Q Consensus 476 ~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~ 513 (725)
++ +.+ ||++|+++|+++. .+.+++|+||+-+....
T Consensus 178 ~~--~~~pGHt~g~~~~~i~~-~~~~vlftGD~~~~~~~ 213 (280)
T 3esh_A 178 KM--QHSGGHSFGHTIITIES-QGDKAVHMGDIFPTTAH 213 (280)
T ss_dssp EE--EECCSSSTTCEEEEEEE-TTEEEEECGGGSCSGGG
T ss_pred EE--EEcCCCCcccEEEEEEE-CCcEEEEEEccCCchhh
Confidence 44 544 8999999999986 67789999999987654
No 78
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=111.26 Aligned_cols=59 Identities=31% Similarity=0.499 Sum_probs=55.3
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhh-ccCCCCCCChhHHHHHHHHH
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDL-IGIGVTALGPRKKILHTLCE 291 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL-~~lGI~~~G~RkkIl~aI~~ 291 (725)
...+|.+||.+|||++|.+.|.+++| +++.+..|+++|| ++|||+.+||||||+.+|++
T Consensus 87 ~~~~v~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~ 147 (148)
T 2kiv_A 87 HPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGD 147 (148)
T ss_dssp CCSSHHHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhh
Confidence 45689999999999999999999999 7899999999997 89999999999999999874
No 79
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=98.99 E-value=8.8e-10 Score=115.97 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=76.9
Q ss_pred CccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHH---HhCCCC-------cceEEecCCCEEEECCEEEEEEe
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNM---KIGIPW-------DRLQVLPLNQKTTIAGIDVTCLE 481 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~---~lg~~~-------~~~~~l~~ge~~~Iggv~Vt~~~ 481 (725)
+|++||+||.|.||++|+..+. ..++||+++.+..++.. .++.+. .....+..++.+.+++++|+++.
T Consensus 64 ~i~~Il~TH~H~DH~gg~~~l~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~g~~~i~vi~ 143 (298)
T 4efz_A 64 RVRWLLETHVHADHLSAAPYLKTRVGGEIAIGRHVTRVQDVFGKLFNAGPAFAHDGSQFDRLLDDGDTLALGALSIRAMH 143 (298)
T ss_dssp EEEEEECSSCCSSSBCCHHHHHHHHCCEEEEETTHHHHHHHHHHHTTCCTTSCSSSTTSSEEECTTCEEEETTEEEEEEE
T ss_pred cceEEEECCCchhhhhhHHHHHHHhCCcEEEChhHHHHHHHHHHhcCCcccccccccCCCEEeCCCCEEEECCEEEEEEE
Confidence 5899999999999999998543 25899999887765542 233221 12367889999999999999999
Q ss_pred c-ccCCCCeEEEEeccCCeE------EEEecccCCChh
Q 004877 482 A-NHCPGSIIILFEPQNGKA------VLHTGDFRFSEE 512 (725)
Q Consensus 482 a-gH~pGS~~flIe~~~Gk~------IlYTGD~~~~~~ 512 (725)
+ ||++|+++|++.. .+++ ++||||+-+...
T Consensus 144 tPGHT~g~~~~~~~~-~~~~~~~~~~~lftGD~l~~~~ 180 (298)
T 4efz_A 144 TPGHTPACMTYVVTE-AHAAHDARDAAAFVGDTLFMPD 180 (298)
T ss_dssp CCSSSTTCEEEEEEE-TTCCGGGCBCEEECCSSBCCTT
T ss_pred CCCCCcccEEEEECC-CcccccCCceEEEEcCccccCC
Confidence 8 8999999999985 4544 999999987643
No 80
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=98.99 E-value=1.8e-10 Score=101.13 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=59.9
Q ss_pred CCCCcccHHHHHHHC--CChhhHHHHhhcCCCHHHHhcCChhhhc-cCCCCCCChhHHHHHHHHHHHHhh
Q 004877 230 KAVDVSPVVEFLHSL--GLARYEEAFVREEIDWDTLQWLTEEDLI-GIGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 230 ~~~~~~~v~~wL~~l--gL~~Y~~~F~~~~id~~~l~~Lt~~DL~-~lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
..|+..+|.+||+.+ |+++|.+.|.+++|||++|+.|+++||. .|||. +||+.||..+|..|+..-
T Consensus 15 ~~WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgik-lGpalKi~~~I~~lk~~~ 83 (89)
T 1pk1_B 15 IDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLK-LGPALKICNLVNKVNGRD 83 (89)
T ss_dssp GGCCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCCC-HHHHHHHHHHHHHHC---
T ss_pred hhCCHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCCC-ccHHHHHHHHHHHHHccc
Confidence 579999999999998 7999999999999999999999999984 79997 999999999999998553
No 81
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=98.97 E-value=2.6e-09 Score=116.87 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=83.5
Q ss_pred CCCceEeCCcccc--------------CCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcce
Q 004877 399 PGTPFRVDAFKYL--------------RGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRL 461 (725)
Q Consensus 399 pg~~~~ID~f~~~--------------~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~ 461 (725)
.+..+.||+.... ..+|++||+||.|.||++|+..+ +...+||+++.+...+...++.+...+
T Consensus 48 ~~~~iLID~G~~~~~~~~~~~l~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 127 (414)
T 2q9u_A 48 DECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQEHLKILYGMEKATW 127 (414)
T ss_dssp SSSCEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHGGGSTTCEEEECHHHHHHHHHHHCCTTCCE
T ss_pred CCCEEEEeCCCcccHHHHHHHHHHhcCcccCCEEEeCCCCcchhcCHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCCee
Confidence 3456788887421 24789999999999999999853 346899999999998887666432346
Q ss_pred EEecCCCEEEECCEEEEEEec--ccCCCCeEEEEeccCCeEEEEecccC
Q 004877 462 QVLPLNQKTTIAGIDVTCLEA--NHCPGSIIILFEPQNGKAVLHTGDFR 508 (725)
Q Consensus 462 ~~l~~ge~~~Iggv~Vt~~~a--gH~pGS~~flIe~~~Gk~IlYTGD~~ 508 (725)
..+..++.+.+++.+++++++ ||++|++++++.. . +++|+||..
T Consensus 128 ~~~~~g~~~~lg~~~~~~~~~p~gHt~~~~~~~~~~--~-~~lf~GD~~ 173 (414)
T 2q9u_A 128 LIVDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPE--D-KILFSNDGF 173 (414)
T ss_dssp EECCTTCCEECSSCEEEEEECTTSSSTTCEEEEETT--T-TEEEEETTT
T ss_pred EEeCCCCEEEECCeEEEEEeCCCCCCCCceEEEECC--C-eEEEEcccc
Confidence 778889999999988888877 6999999877642 3 499999964
No 82
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=98.94 E-value=2.6e-09 Score=110.01 Aligned_cols=112 Identities=22% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCCceEeCCccc---------c------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHh------C
Q 004877 399 PGTPFRVDAFKY---------L------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKI------G 455 (725)
Q Consensus 399 pg~~~~ID~f~~---------~------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~l------g 455 (725)
++..+.||+... + ..+|++||+||.|.||++|+..+. ...+||+++.+...+.... +
T Consensus 46 ~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 125 (269)
T 1sml_A 46 PDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFG 125 (269)
T ss_dssp TTEEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHSSCEEEECHHHHHHHHTTTCSBTTTB
T ss_pred CCceEEEECCCCccHHHHHHHHHHcCCChHHCcEEEeCCCCccccCCHHHHHHhcCCeEEECHHHHHHHhcCCccccccc
Confidence 455678888742 1 125899999999999999998543 2579999999988876432 1
Q ss_pred C----C-CcceEEecCCCEEEECCEEEEEEec-ccCCCCeEEEEecc-CCe-EEEEecccCCC
Q 004877 456 I----P-WDRLQVLPLNQKTTIAGIDVTCLEA-NHCPGSIIILFEPQ-NGK-AVLHTGDFRFS 510 (725)
Q Consensus 456 ~----~-~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~-~Gk-~IlYTGD~~~~ 510 (725)
. . ......+..++.+.+++++|+++.+ ||++|+++|+++.. +|+ ..+++||+-+.
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~l~~gD~l~~ 188 (269)
T 1sml_A 126 DGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSA 188 (269)
T ss_dssp TSSCCCCCCCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCC
T ss_pred cccCCCCCCCCeEeCCCCEEEECCEEEEEEECCCCCcccEEEEEecccCCceeEEEEeccccC
Confidence 0 1 1123567888999999999999988 79999999998742 243 24555998653
No 83
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=98.93 E-value=2e-09 Score=107.77 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=74.1
Q ss_pred CCccEEEeccCchhhhCChhhhc-CCceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEe--cccCCCCe
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF-HHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLE--ANHCPGSI 489 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~-~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~--agH~pGS~ 489 (725)
.++++||+||.|.||++|+..+. ...+||+++.+.+.+....... ....+..++.+.+++.+|+++. .||++|++
T Consensus 63 ~~i~~vi~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~g~~~i~~~~~~pgHt~~~~ 140 (223)
T 1m2x_A 63 KKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENKPR--AQYTFDNNKSFKVGKSEFQVYYPGKGHTADNV 140 (223)
T ss_dssp CCEEEEECSSSSTTTTTTHHHHHHTTCEEEEEHHHHHHHHHTTCCC--CSEEESSCEEEEETTEEEEEECCCSSSSSSCC
T ss_pred CCeEEEEeccCCccccCchhhHhhCCCeEEEcHHHHHHHHhcCccC--CceecCCCceEEECCEEEEEEecCCCCCCCCE
Confidence 47899999999999999998543 3679999999988877532211 2356788899999999999984 59999999
Q ss_pred EEEEeccCCeEEEEecccCCC
Q 004877 490 IILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 490 ~flIe~~~Gk~IlYTGD~~~~ 510 (725)
+|+++. + +++|+||+-+.
T Consensus 141 ~~~~~~--~-~~lf~GD~~~~ 158 (223)
T 1m2x_A 141 VVWFPK--E-KVLVGGCIIKS 158 (223)
T ss_dssp EEEETT--T-TEEEEETTSCC
T ss_pred EEEECC--C-CEEEEeccccc
Confidence 999863 2 49999997644
No 84
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=98.93 E-value=1.9e-09 Score=108.17 Aligned_cols=107 Identities=19% Similarity=0.140 Sum_probs=80.5
Q ss_pred CCCceEeCCcccc--------------CCCccEEEeccCchhhhCChhhhcC-CceEEeCHHHHHHHHHHhCCCCcceEE
Q 004877 399 PGTPFRVDAFKYL--------------RGDCSHWFLTHFHMDHYQGLTRSFH-HGKIYCSLITARLVNMKIGIPWDRLQV 463 (725)
Q Consensus 399 pg~~~~ID~f~~~--------------~~~idaIfLTHaH~DHigGLp~~~~-~~pIY~s~~T~~ll~~~lg~~~~~~~~ 463 (725)
.+..+.||+.... ..++++||+||.|.||++|+..+.. ..+||+++.+..++.. .+.+. .+..
T Consensus 49 ~~~~iliD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~-~~~~~-~~~~ 126 (227)
T 1mqo_A 49 SKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKK-NGYEE-PLGD 126 (227)
T ss_dssp TTEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHHTCEEECBHHHHHHHHH-TTCCC-CCCC
T ss_pred CCeEEEEECCCChHHHHHHHHHHHHhcCCCceEEEeCCCCchhccchHHHhhCCcEEEeccchHHHHHh-cCCCC-Cccc
Confidence 4556788887431 2578999999999999999985432 5799999999887764 23321 2344
Q ss_pred ecCCCEEEECCEEEEEE-e-cccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 464 LPLNQKTTIAGIDVTCL-E-ANHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 464 l~~ge~~~Iggv~Vt~~-~-agH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
+..++.+.+++++|+++ + .||++|+++|+++. . +++|+||+.+.
T Consensus 127 ~~~~~~~~~g~~~i~~~~~~pgHt~g~~~~~~~~--~-~~lf~GD~~~~ 172 (227)
T 1mqo_A 127 LQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQ--Y-NILVGGCLVKS 172 (227)
T ss_dssp BCSEEEEEETTEEEEEECCCCSSSSSCCEEEETT--T-TEEEEETTSCC
T ss_pred cCCCCeeeECCEEEEEEecCCCCCCCCEEEEECC--C-CEEEEeeeeec
Confidence 56677889999999987 3 49999999999863 2 49999998754
No 85
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=98.93 E-value=9.4e-10 Score=113.69 Aligned_cols=100 Identities=26% Similarity=0.256 Sum_probs=76.9
Q ss_pred CceEeCCccc---------cCCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhCCCCcceEEecCCCE
Q 004877 401 TPFRVDAFKY---------LRGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQK 469 (725)
Q Consensus 401 ~~~~ID~f~~---------~~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~ 469 (725)
..+.||+... ...++++||+||.|.||++|+..+. ...+||+++.+...+. + ....+..++.
T Consensus 24 ~~~lID~g~~~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~---~----~~~~~~~g~~ 96 (254)
T 1xm8_A 24 TVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMDKDRIP---G----IDMALKDGDK 96 (254)
T ss_dssp CEEEECCSSHHHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHHCCEEEEEGGGGGGST---T----EEEEECTTCE
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCccEEEECCCCCcccccHHHHHHHcCCeEEEchhhhhcCC---C----CceeeCCCCE
Confidence 4567887632 1136899999999999999998543 2579999987654321 1 2356788999
Q ss_pred EEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 470 TTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 470 ~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
+.+++.+|+++.+ ||++|+++|+++. . +++|+||+-+.
T Consensus 97 ~~lg~~~~~vi~tPGHt~g~~~~~~~~-~--~~lftGD~l~~ 135 (254)
T 1xm8_A 97 WMFAGHEVHVMDTPGHTKGHISLYFPG-S--RAIFTGDTMFS 135 (254)
T ss_dssp EEETTEEEEEEECCSSSSSCEEEEEGG-G--TEEEEETTEET
T ss_pred EEECCEEEEEEECCCCCCCcEEEEECC-C--CEEEEcCcccc
Confidence 9999999999987 9999999999963 2 39999999764
No 86
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=98.92 E-value=1.2e-09 Score=112.19 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=78.8
Q ss_pred CCceEeCCcccc-----------CCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcceEEec
Q 004877 400 GTPFRVDAFKYL-----------RGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRLQVLP 465 (725)
Q Consensus 400 g~~~~ID~f~~~-----------~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~ 465 (725)
+..+.||+.... ..++++||+||.|.||++|+..+ +...+||++..+.. .....+.
T Consensus 28 ~~~ilID~g~~~~~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~----------~~~~~~~ 97 (245)
T 2gcu_A 28 KPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGS----------KADLFLE 97 (245)
T ss_dssp CEEEEESCBGGGHHHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHSTTCEEEEEGGGCC----------CCSEEEC
T ss_pred CcEEEEeCCCchHHHHHHHHHHCCCeeeEEEeCCCChhhhhhHHHHHHhCCCCeEEecccccc----------cCCEEcC
Confidence 345778877431 12589999999999999999854 45689999976532 1235678
Q ss_pred CCCEEEECCEEEEEEec-ccCCCCeEEEEeccC---CeEEEEecccCCCh
Q 004877 466 LNQKTTIAGIDVTCLEA-NHCPGSIIILFEPQN---GKAVLHTGDFRFSE 511 (725)
Q Consensus 466 ~ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~---Gk~IlYTGD~~~~~ 511 (725)
.++.+.+++++|+++.+ ||++|+++|+++..+ +.+++||||+.+..
T Consensus 98 ~g~~~~~g~~~i~v~~tpGHt~g~~~~~~~~~~~~~~~~~lftGD~~~~~ 147 (245)
T 2gcu_A 98 PGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIR 147 (245)
T ss_dssp TTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETTSBTT
T ss_pred CCCEEEECCEEEEEEECCCCCCCCEEEEECCccccccccEEEECCccccC
Confidence 89999999999999988 999999999997521 23699999998753
No 87
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=98.92 E-value=2.2e-09 Score=108.29 Aligned_cols=107 Identities=17% Similarity=0.264 Sum_probs=82.5
Q ss_pred CCCceEeCCccc----------c----CCCccEEEeccCchhhhCChhhhc-CCceEEeCHHHHHHHHHHhCCCCcceEE
Q 004877 399 PGTPFRVDAFKY----------L----RGDCSHWFLTHFHMDHYQGLTRSF-HHGKIYCSLITARLVNMKIGIPWDRLQV 463 (725)
Q Consensus 399 pg~~~~ID~f~~----------~----~~~idaIfLTHaH~DHigGLp~~~-~~~pIY~s~~T~~ll~~~lg~~~~~~~~ 463 (725)
++..+.||+... + ..++++||+||.|.||++|+..+. ...+||+++.+..++... +.+. ....
T Consensus 45 ~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~-~~~~-~~~~ 122 (232)
T 1a7t_A 45 NHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEK-GLPV-PEHG 122 (232)
T ss_dssp TTEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHH-TCCC-CSEE
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCCccccCCHHHHHhCCCeEEEcHHHHHHHHhc-CCCC-Ccee
Confidence 455678888732 0 236899999999999999998543 357999999998887653 3221 2356
Q ss_pred ecCCCEEEECCEEEEEEe--cccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 464 LPLNQKTTIAGIDVTCLE--ANHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 464 l~~ge~~~Iggv~Vt~~~--agH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
+..++.+.+++.+|+++. .||++|+++|+++. + +++|+||+.+.
T Consensus 123 ~~~g~~~~~g~~~i~~~~~~pgHt~g~~~~~~~~--~-~~lf~GD~~~~ 168 (232)
T 1a7t_A 123 FTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPT--E-NILFGGCMLKD 168 (232)
T ss_dssp ESSEEEEEETTEEEEEECCCCSSSTTCCEEEETT--T-TEEEEETTSCC
T ss_pred cCCCCEEEECCeEEEEEeCCCCCCCCCEEEEECC--C-CEEEEcCcccc
Confidence 778888999999999995 49999999999863 3 49999999774
No 88
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=98.92 E-value=2.5e-09 Score=112.14 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=79.9
Q ss_pred CCCceEeCCccc---------------cCCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHH-------
Q 004877 399 PGTPFRVDAFKY---------------LRGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMK------- 453 (725)
Q Consensus 399 pg~~~~ID~f~~---------------~~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~------- 453 (725)
.+..+.||+... ...+|++||+||.|.||++|++.+ ++..+||+++.+.+.+...
T Consensus 33 ~~~~iLID~G~~~~~~~~~~~l~~~~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~a~v~~~~~~~~~~~~~~~~~~~~ 112 (303)
T 2vw8_A 33 EASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVE 112 (303)
T ss_dssp TTEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSTTTTTTHHHHGGGCTTCEEEEEHHHHHHTTCHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhcCcccceEEEeccCCccccCCHHHHHHhCCCCeEEECHHHHHHHhccchhhHHH
Confidence 445577887752 124689999999999999999854 3468999999887654310
Q ss_pred ---------hCC-------CCcceEEecCCCEEEECC-EEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCC
Q 004877 454 ---------IGI-------PWDRLQVLPLNQKTTIAG-IDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRF 509 (725)
Q Consensus 454 ---------lg~-------~~~~~~~l~~ge~~~Igg-v~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~ 509 (725)
++. .......+..++.+.+++ ++++++.+ ||++|+++|++.. . +++|+||+-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~g~~l~~i~~pGHt~g~~~~~~~~--~-~~lf~GD~~~ 183 (303)
T 2vw8_A 113 RLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVR--R-RRLFCGDALG 183 (303)
T ss_dssp HHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEEEEETTEEEEEEECTTSSTTCEEEEETT--T-TEEEEETTTC
T ss_pred HHHHHHHHhhcccccccCCCCCCceEcCCCCEEecCCCeEEEEEECCCCCcccEEEEECC--C-CEEEEcCccC
Confidence 110 011346678899999987 89998888 9999999999863 2 4999999953
No 89
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=98.91 E-value=1.7e-09 Score=111.48 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=68.3
Q ss_pred CccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHh--------CC----------------------CCcceEE
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKI--------GI----------------------PWDRLQV 463 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~l--------g~----------------------~~~~~~~ 463 (725)
+|++|||||+|.||++|++.+ ...+||+++.+...+.... .. ....+..
T Consensus 88 ~i~~VilTH~H~DH~gg~~~~-~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (274)
T 3aj3_A 88 DIDVVVNSHFHFDHCGGNKYF-PHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLEGTTRANSTFEG 166 (274)
T ss_dssp GCCEEECSCCSGGGTTTGGGC-TTSEEEEETTHHHHHHSCCGGGTTTTCCCTTCHHHHHHHTCGGGCCTTCCSTTSCEEE
T ss_pred HCCEEEecCcCcccCCchhhC-CCCEEEECHHHHHHHhCcCCccccccChhhhccccccccccccccccccccCCCCceE
Confidence 589999999999999999864 5689999998887765211 00 0112334
Q ss_pred ecCCCEEEECC-EEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhh
Q 004877 464 LPLNQKTTIAG-IDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEM 513 (725)
Q Consensus 464 l~~ge~~~Igg-v~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~ 513 (725)
++ +.+.+++ ++|...+ ||++|+++|+++..++.+++|+||+.+....
T Consensus 167 ~~--~~~~l~g~~~v~~~p-GHt~g~~~~~~~~~~~~~~lf~GD~~~~~~~ 214 (274)
T 3aj3_A 167 ID--GDVDLARGVKLISTP-GHSIGHYSLLVEFPRRKPILFTIDAAYTQKS 214 (274)
T ss_dssp EC--SSEEEETTEEEEECT-TSSTTCEEEEECCSSSCCEEEEETTCSSHHH
T ss_pred cC--CccccCCEEEEEECC-CCCceeeEEEEECCCCCEEEEEechhhhHHH
Confidence 43 3467777 5554443 8999999999985324569999999877643
No 90
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=98.91 E-value=2.3e-09 Score=112.74 Aligned_cols=94 Identities=22% Similarity=0.195 Sum_probs=72.5
Q ss_pred CccEEEeccCchhhhCChhhhcC-CceEEeCHHHHHHHHHH-----------------hCCC------------------
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSFH-HGKIYCSLITARLVNMK-----------------IGIP------------------ 457 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~~-~~pIY~s~~T~~ll~~~-----------------lg~~------------------ 457 (725)
+|++||+||.|.||++|+..+.. ..+||+++.+...+... .+.+
T Consensus 62 ~i~~Vi~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 141 (317)
T 2zo4_A 62 DVKTILLTHHHPDHYGLSGFFEGLGARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERV 141 (317)
T ss_dssp GCCEEEESCCSHHHHTTHHHHHHTTCEEEEEGGGTTTHHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTC
T ss_pred hcCEEEEcCCCCcccccHHHHHhCCCEEEEcHHHHHHHHhhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcccccccC
Confidence 48999999999999999985331 68999998776554321 1221
Q ss_pred --CcceEEecCCCEEEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 458 --WDRLQVLPLNQKTTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 458 --~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
......+..++.+.+++.+++++.+ ||++|+++|++.. . +++|+||+-+.
T Consensus 142 ~~~~~~~~~~~g~~l~~gg~~~~~i~tpGHt~g~~~~~~~~--~-~~lf~GD~~~~ 194 (317)
T 2zo4_A 142 HPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEE--E-GVLLAGDALLE 194 (317)
T ss_dssp CCCSSCEEECTTCEEEETTEEEEEEECCSSSTTCEEEEETT--T-TEEEEETSCCS
T ss_pred CCCCCceEECCCCEEEeCCceEEEEECCCCCcccEEEEeCC--C-CEEEECCEecC
Confidence 1134678889999999999999998 8999999998742 3 39999999864
No 91
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=98.88 E-value=6.7e-10 Score=112.69 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=78.3
Q ss_pred CCCceEeCCccc-------------c-CCCccEEEeccCchhhhCChhhhcC-CceEEeCHHHHHHHHHHhCCCC-----
Q 004877 399 PGTPFRVDAFKY-------------L-RGDCSHWFLTHFHMDHYQGLTRSFH-HGKIYCSLITARLVNMKIGIPW----- 458 (725)
Q Consensus 399 pg~~~~ID~f~~-------------~-~~~idaIfLTHaH~DHigGLp~~~~-~~pIY~s~~T~~ll~~~lg~~~----- 458 (725)
.+..+.||+... . ..+|++||+||.|.||++|++.+.. ..+||+++.+..++........
T Consensus 56 ~~~~iLID~G~~~~~~~~l~~~l~~~~~~~i~~vi~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (243)
T 4hl2_A 56 GGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLT 135 (243)
T ss_dssp TTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHTTCEEEEEHHHHHHGGGTTCCCCSEEEC
T ss_pred CCcEEEEECCCCCccHHHHHHHHHHhhCCCeeEEEECCCCccccCCHHHHHhCCCeEEECHHHHHHHhcccccccccccc
Confidence 455688888721 1 2368999999999999999995432 6899999999888764322111
Q ss_pred -cceEEecCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 459 -DRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 459 -~~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
.....+..++.+.+++++|.....||++|+++|+++. + +++|+||+-+.
T Consensus 136 ~~~~~~~~~g~~~~~g~~~v~~~~pGHt~g~~~~~~~~--~-~~lf~GD~~~~ 185 (243)
T 4hl2_A 136 FAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDG--T-DIAFGGCLIKD 185 (243)
T ss_dssp BCTTSBBCGGGSTTCTTEEEECCCSSSSTTCCEEEETT--T-TEEECTTTCCC
T ss_pred cccceEecCCCeEEECCEEEEeCCCCCCcCCEEEEEcC--C-CEEEEcceeee
Confidence 1112345677778899999334559999999999963 3 39999998774
No 92
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=98.88 E-value=3.1e-09 Score=113.06 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=70.9
Q ss_pred CCccEEEeccCchhhhCChhhh---cC------CceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEec-
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRS---FH------HGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEA- 482 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~---~~------~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~a- 482 (725)
.+|++||+||.|.||++|+..+ +. ..+||++.... .+ .....+..++.+.+++++|+++.+
T Consensus 83 ~~i~~IllTH~H~DH~gg~~~l~~~~~~~~~~~~~~v~~~~~~~--------~~-~~~~~l~~g~~l~lg~~~l~vi~tP 153 (311)
T 2p18_A 83 YTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDS--------IP-AVTKPVREGDRVQVGDLSVEVIDAP 153 (311)
T ss_dssp CEEEEEEESSSSHHHHTTHHHHHHHHHSCC--CCCEEEEEGGGT--------CT-TCSEEECTTCEEEETTEEEEEEECC
T ss_pred CCccEEEeCCCCccccCCHHHHHHhhhhcccCCCCEEEEechhc--------CC-CCceEeCCCCEEEECCeEEEEEECC
Confidence 3588999999999999999843 21 57999987652 11 134568889999999999999998
Q ss_pred ccCCCCeEEEEeccC--Ce-EEEEecccCCCh
Q 004877 483 NHCPGSIIILFEPQN--GK-AVLHTGDFRFSE 511 (725)
Q Consensus 483 gH~pGS~~flIe~~~--Gk-~IlYTGD~~~~~ 511 (725)
||++|+++|+++..+ +. +++|+||+.+..
T Consensus 154 GHT~g~i~~~~~~~~~~~~~~~lftGD~l~~~ 185 (311)
T 2p18_A 154 CHTRGHVLYKVQHPQHPNDGVALFTGDTMFIA 185 (311)
T ss_dssp SSSTTCEEEEEECTTCGGGCEEEEEETTEETT
T ss_pred CCCcccEEEEEecCCcCCcCCEEEEcCccccC
Confidence 999999999997422 04 799999997653
No 93
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=98.87 E-value=4.4e-09 Score=109.06 Aligned_cols=100 Identities=21% Similarity=0.245 Sum_probs=74.7
Q ss_pred CceEeCCcccc---------CCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcceEEecCCC
Q 004877 401 TPFRVDAFKYL---------RGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQ 468 (725)
Q Consensus 401 ~~~~ID~f~~~---------~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge 468 (725)
..+.||+.... ..++++||+||.|.||++|+..+ ++..+||++.... + .....+..++
T Consensus 24 ~~vlID~G~~~~i~~~l~~~g~~i~~IllTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~---------~-~~~~~~~~g~ 93 (260)
T 1qh5_A 24 EAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRI---------G-ALTHKITHLS 93 (260)
T ss_dssp EEEEESCSSHHHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHSTTCEEEESCTTS---------T-TCSEECCTTC
T ss_pred EEEEEcCCCHHHHHHHHHHcCCCccEEEeCCCCccccCCHHHHHHHCCCCEEEECcccC---------C-CCCEEeCCCC
Confidence 45778876321 12578999999999999999853 3468999986321 1 1235678899
Q ss_pred EEEECCEEEEEEec-ccCCCCeEEEE-ecc-CCeEEEEecccCCC
Q 004877 469 KTTIAGIDVTCLEA-NHCPGSIIILF-EPQ-NGKAVLHTGDFRFS 510 (725)
Q Consensus 469 ~~~Iggv~Vt~~~a-gH~pGS~~flI-e~~-~Gk~IlYTGD~~~~ 510 (725)
.+.+++++|+++.+ ||++|+++|++ +.. .+..++||||+-+.
T Consensus 94 ~~~~g~~~~~vi~tPGHt~g~~~~~~~~~~~~~~~~lftGD~l~~ 138 (260)
T 1qh5_A 94 TLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFV 138 (260)
T ss_dssp EEEETTEEEEEEECCSSSTTCEEEEEECSSSSSCCEEEEETTEET
T ss_pred EEEECCEEEEEEECCCCCCCCEEEEEeccCCCCCCEEEEcCcccc
Confidence 99999999999988 99999999998 321 23459999999654
No 94
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=98.87 E-value=9.4e-10 Score=110.56 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=74.9
Q ss_pred CCCceEeCCccc---------------cCCCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhC--------
Q 004877 399 PGTPFRVDAFKY---------------LRGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIG-------- 455 (725)
Q Consensus 399 pg~~~~ID~f~~---------------~~~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg-------- 455 (725)
++..+.||+... ...+|++||+||.|.||++|++.+. ..+||+++.........++
T Consensus 43 ~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~ViiTH~H~DH~gg~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 121 (221)
T 1ztc_A 43 KDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFE-NATFYVHEVYKTKNYLSFGTIVGRIYS 121 (221)
T ss_dssp TTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGGCT-TCEEEEEGGGGGSCGGGGCHHHHHHHH
T ss_pred CCeEEEEECCCCcchHHHHHHHHHcCCCHHHCcEEEEcCCccccCCchhhCC-CCEEEEeHHHhhhhhhhhccchhhhhh
Confidence 445677888742 0126899999999999999998643 6899998762110000011
Q ss_pred ---CCCcceEEecCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChh
Q 004877 456 ---IPWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEE 512 (725)
Q Consensus 456 ---~~~~~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~ 512 (725)
.....+..++.++.+..++++|...+ ||++|+++|+++..++++++|+||+.+...
T Consensus 122 ~~~~~~~~~~~~~~g~~l~~~~~~v~~~p-GHt~g~~~~~~~~~~~~~vlftGD~~~~~~ 180 (221)
T 1ztc_A 122 KVISSWKNVVLLKGEESLFDEKVKVFHTP-WHAREHLSFLLDTENAGRVLITGDITPNRL 180 (221)
T ss_dssp HHHHTCCSEEEECSCCEETTTTEEEEECC-SSSTTCEEEEEEETTTEEEEECGGGSCSHH
T ss_pred hccccccceEEeCCCCEEECCeEEEEEcC-CCCcccEEEEEEcCCCCeEEEEeCcccccc
Confidence 00124566777776642367776666 999999999998632267999999987643
No 95
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=98.87 E-value=1.8e-09 Score=107.03 Aligned_cols=106 Identities=21% Similarity=0.229 Sum_probs=73.4
Q ss_pred CCCceEeCCcccc----------CCCccEEEeccCchhhhCChhhhcC--CceEEeCHHHHHHHHHH------hCCCCc-
Q 004877 399 PGTPFRVDAFKYL----------RGDCSHWFLTHFHMDHYQGLTRSFH--HGKIYCSLITARLVNMK------IGIPWD- 459 (725)
Q Consensus 399 pg~~~~ID~f~~~----------~~~idaIfLTHaH~DHigGLp~~~~--~~pIY~s~~T~~ll~~~------lg~~~~- 459 (725)
++..+.||+.... ..++++||+||+|.||++|++.+.. +.+||+++.+.+.+... ++.+..
T Consensus 21 ~~~~iliD~G~~~~~l~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 100 (207)
T 2zwr_A 21 GEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPK 100 (207)
T ss_dssp TTEEEEECCCSCHHHHHHHHHHHTCCCSCEECSCCCGGGTTTHHHHHHHHCCCEEECGGGHHHHHTHHHHHHHTTCCCCC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHcCCcccEEEECCCChHHHccHHHHHHHhCCcEEECHHHHHHHhCchhhhhhcCCCCCc
Confidence 3455778877321 1258999999999999999985432 57999999998877632 233211
Q ss_pred ---ceEEecCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 460 ---RLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 460 ---~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
....+..++.+. ++++...| ||++|+++|+++. .+++|+||+.+.
T Consensus 101 ~~~~~~~~~~g~~i~--~~~~~~~p-GHt~g~~~~~~~~---~~~lf~GD~~~~ 148 (207)
T 2zwr_A 101 PPLPVRPLEEGMRLF--GFQVLHLP-GHSPGHVAFYDPE---GAQVFSGDLLFR 148 (207)
T ss_dssp CCSCCEECCTTCEET--TEEEEECC-SSSTTCEEEEETT---TTEEEEETSEET
T ss_pred CCCCceEeCCCCEEE--EEEEEeCC-CCCCCcEEEEECC---CCEEEEecccCC
Confidence 234566666554 45544332 8999999999862 349999999764
No 96
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.87 E-value=1.2e-09 Score=122.39 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=82.2
Q ss_pred CCCceEeCCcccc----------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhCCCCcceEEecC
Q 004877 399 PGTPFRVDAFKYL----------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIGIPWDRLQVLPL 466 (725)
Q Consensus 399 pg~~~~ID~f~~~----------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ 466 (725)
.+..+.||+.... ..++++||+||.|.||++|+..+. ...+||+++.+...+...+. .......+..
T Consensus 26 ~~~~ilID~g~~~~~~~~~l~~~~~~i~~Il~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 104 (474)
T 3tp9_A 26 TGEACVIDPARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREMADRAGAAICVSDEGPPEWKSEYV-KAYPHRLLKD 104 (474)
T ss_dssp TCEEEEESCCSCCHHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHHCCEEEEECCSCGGGCCGGG-GGSSEEEECT
T ss_pred CCEEEEEcCCCChHHHHHHHHHcCCeeEEEEcCcCchhhhCCHHHHHHHHCCcEEEcCcchhhhccccc-ccccceECCC
Confidence 4556889987431 126899999999999999999543 25899998776543322111 1112467889
Q ss_pred CCEEEECCEEEEEEec-ccCCCCeEEEEeccCCe-----EEEEecccCCC
Q 004877 467 NQKTTIAGIDVTCLEA-NHCPGSIIILFEPQNGK-----AVLHTGDFRFS 510 (725)
Q Consensus 467 ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk-----~IlYTGD~~~~ 510 (725)
++.+.+++++|+++.+ ||++|+++|++.. .+. +++||||+-+.
T Consensus 105 g~~~~~g~~~i~~i~tPGHt~g~~~~~~~~-~~~~~~~~~~lftGD~lf~ 153 (474)
T 3tp9_A 105 GDELHFGNVRIVVMHTPGHTPEHVSYLLYD-GKTSPDVPMALFSGDFVFV 153 (474)
T ss_dssp TCEEEETTEEEEEEECCSSSSSCEEEEEEE-TTTEEEEEEEEEEETSEET
T ss_pred CCEEEECCEEEEEEECCCCCCCCEEEEEec-CCCCCCCceEEEeCCcccc
Confidence 9999999999999998 8999999999985 333 69999999743
No 97
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=98.86 E-value=1.2e-09 Score=105.29 Aligned_cols=73 Identities=25% Similarity=0.376 Sum_probs=61.8
Q ss_pred CCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhcccCCCCcccc
Q 004877 232 VDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYSRAVESNKDAH 307 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~~~~~~~~~~~ 307 (725)
....+|.+||++|+|.+|.+.|.. ++++.++.||++||.++||++ |+|+||+.+|+.+|.+...-...+.+..
T Consensus 5 s~~~dV~~WLksLrLhKY~~~F~~--~~~e~~~~LTdedL~~~GVT~-GARrKIL~aIq~Lrer~~~l~~le~~~~ 77 (173)
T 1oxj_A 5 VGMSGIGLWLKSLRLHKYIELFKN--MTYEEMLLITEDFLQSVGVTK-GASHKLALCIDKLKERANILNRVEQELL 77 (173)
T ss_dssp TTCTTHHHHHHHTTCGGGGGGGTT--CCHHHHTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHcccchhHHHHcc--CCHHHHHhcCHHHHHHCCCch-HHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 345689999999999999999965 789999999999999999995 9999999999999988755444444333
No 98
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=98.84 E-value=1.6e-09 Score=121.53 Aligned_cols=110 Identities=23% Similarity=0.297 Sum_probs=81.5
Q ss_pred CCceEeCCccccC----------CCccEEEeccCchhhhCChhhhcC--CceEEeCHHHHHHHHHHhCCCCcceEEecCC
Q 004877 400 GTPFRVDAFKYLR----------GDCSHWFLTHFHMDHYQGLTRSFH--HGKIYCSLITARLVNMKIGIPWDRLQVLPLN 467 (725)
Q Consensus 400 g~~~~ID~f~~~~----------~~idaIfLTHaH~DHigGLp~~~~--~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~g 467 (725)
+..+.||+..... .+|++||+||.|.||++|+..+.. ..+||+++.+...+.. .........+..+
T Consensus 48 ~~~vlID~g~~~~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~a~v~~~~~~~~~~~~--~~~~~~~~~~~~g 125 (466)
T 3r2u_A 48 GEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLNANIYVSGESDDTLGY--KNMPNHTHFVQHN 125 (466)
T ss_dssp CEEEEESCCSCCHHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHHCCEEEEECCSCTTTSC--CSCCTTCEEECTT
T ss_pred CEEEEEcCCCCHHHHHHHHHHCCCeeeEEEECCCChhhhccHHHHHHhhCCeEEECcchhhhhcc--ccCCCCCEEeCCC
Confidence 4457888874321 258999999999999999985432 5899998765332221 1111145778899
Q ss_pred CEEEECCEEEEEEec-ccCCCCeEEEEecc----CCeEEEEecccCCCh
Q 004877 468 QKTTIAGIDVTCLEA-NHCPGSIIILFEPQ----NGKAVLHTGDFRFSE 511 (725)
Q Consensus 468 e~~~Iggv~Vt~~~a-gH~pGS~~flIe~~----~Gk~IlYTGD~~~~~ 511 (725)
+.+.+++++|+++.+ ||++|+++|++... ++.+++||||+-+..
T Consensus 126 ~~l~~g~~~l~vi~tPGHT~g~~~~~~~~~~~~~~~~~~lftGD~lf~~ 174 (466)
T 3r2u_A 126 DDIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFIFVG 174 (466)
T ss_dssp CEEEETTEEEEEEECCSSSTTCEEEEEECGGGTCCSCCEEEEETTBCSS
T ss_pred CEEEECCEEEEEEECCCCCCCCEEEEEcCCCccCCCceEEEECCcccCC
Confidence 999999999999998 89999999999852 234599999997653
No 99
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=98.83 E-value=3.9e-09 Score=109.91 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=78.0
Q ss_pred CCCceEeCCcccc---------------CCCccEEEeccCchhhhCChhhh---c---CCceEEeCHHHHHHHHHHhCCC
Q 004877 399 PGTPFRVDAFKYL---------------RGDCSHWFLTHFHMDHYQGLTRS---F---HHGKIYCSLITARLVNMKIGIP 457 (725)
Q Consensus 399 pg~~~~ID~f~~~---------------~~~idaIfLTHaH~DHigGLp~~---~---~~~pIY~s~~T~~ll~~~lg~~ 457 (725)
.+..+.||+.... ..++++||+||.|.||++|++.+ + ...++|+.+.+.... ..++..
T Consensus 40 ~~~~ilID~G~~~~~~~~~~l~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 118 (289)
T 4ad9_A 40 GPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQRE-EIIGNG 118 (289)
T ss_dssp SSSEEEECCCSTTCHHHHHHHHHHHHHTTCCEEEEECSCSSHHHHTTHHHHHHHSCCSSCCCEEECCCSSCCC-CCBTTT
T ss_pred CCceEEEeCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCCcccccHHHHHHhhccCCCceEEecCCCcchh-hhccCC
Confidence 3456788887321 13689999999999999999843 3 256889875432110 011111
Q ss_pred CcceEEecCCCEEEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 458 WDRLQVLPLNQKTTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 458 ~~~~~~l~~ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
...+..+..++.+.+++.+++++.+ ||++|+++|+++. ++ ++|+||+-+.
T Consensus 119 ~~~~~~~~~g~~~~~gg~~~~~~~~pGHt~~~~~~~~~~--~~-~lftGD~~~~ 169 (289)
T 4ad9_A 119 EQQYVYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEE--EN-AIFSGDCILG 169 (289)
T ss_dssp TBCEEECCTTCEEEETTEEEEEEECCSSSTTCEEEEETT--TT-EEEEETSSCS
T ss_pred CCceEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEcC--CC-EEEEecccCC
Confidence 2346788999999999999999998 9999999999963 32 9999998543
No 100
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=98.83 E-value=3.8e-09 Score=109.37 Aligned_cols=97 Identities=24% Similarity=0.270 Sum_probs=74.7
Q ss_pred CCceEeCCccc---------cCCCccEEEeccCchhhhCChhhh---cCCceEEeCHHHHHHHHHHhCCCCcceEEecCC
Q 004877 400 GTPFRVDAFKY---------LRGDCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITARLVNMKIGIPWDRLQVLPLN 467 (725)
Q Consensus 400 g~~~~ID~f~~---------~~~~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~g 467 (725)
+..+.||+... ...++++||+||.|.||++|+..+ ++..+||+++.+. +. .....+..+
T Consensus 29 ~~~vlID~G~~~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~------~~---~~~~~~~~g 99 (258)
T 2qed_A 29 GRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFPQMTVYGPAETQ------DK---GATHLVGDG 99 (258)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHHCTTCEEEECGGGG------GG---TCSEECCTT
T ss_pred CcEEEEeCCCcHHHHHHHHHcCCCCCEEEeCCCCccccCCHHHHHHHCCCCEEEeccccc------CC---CCcEEeCCC
Confidence 34578888742 112689999999999999999853 3458999997652 11 124567889
Q ss_pred CEEEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 468 QKTTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 468 e~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
+.+.+++.+++++.+ ||++|+++|+ . . +++|+||+.+.
T Consensus 100 ~~~~~g~~~~~vi~tPGHt~g~~~~~-~--~--~~lftGD~l~~ 138 (258)
T 2qed_A 100 DTIRVLGEKFTLFATPGHTLGHVCYF-S--R--PYLFCGDTLFS 138 (258)
T ss_dssp CEEEETTEEEEEEECCSSSTTCEEEE-E--T--TEEEEETTEET
T ss_pred CEEEECCcEEEEEECCCCCCCCeEEE-c--C--CEEEECCCCCC
Confidence 999999999999988 9999999998 3 2 38999999764
No 101
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=98.82 E-value=2e-09 Score=115.10 Aligned_cols=95 Identities=22% Similarity=0.378 Sum_probs=67.3
Q ss_pred CccEEEeccCchhhhCChhh----hcCCceEEeCHHHHHHHHHHh---CCC--------------------CcceEEecC
Q 004877 414 DCSHWFLTHFHMDHYQGLTR----SFHHGKIYCSLITARLVNMKI---GIP--------------------WDRLQVLPL 466 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~----~~~~~pIY~s~~T~~ll~~~l---g~~--------------------~~~~~~l~~ 466 (725)
+|++|||||.|.||++|+.. .+.+.+||+++.+.+.+.... +.+ ...+..++.
T Consensus 139 ~Id~VilTH~H~DHiggl~~~~~~~fp~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (331)
T 1p9e_A 139 QVDEIYITHMHPDHVGGLMVGEQLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSG 218 (331)
T ss_dssp GCCEEECSCCCHHHHGGGEETTEESSTTCEEECBHHHHHHHSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCS
T ss_pred HCCEEEeCCcccccCCcccccccccCCCCEEEECHHHHHHHhCchhhccCchhhhhHHHHHHHHHhhhhcccCceEEeCC
Confidence 58999999999999999983 355789999998877653210 000 012234444
Q ss_pred CCEEEECCEEEEEEec-ccCCCCeEEEEeccCCeEEEEecccCCChh
Q 004877 467 NQKTTIAGIDVTCLEA-NHCPGSIIILFEPQNGKAVLHTGDFRFSEE 512 (725)
Q Consensus 467 ge~~~Iggv~Vt~~~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~~~ 512 (725)
++.+. .++ +++++ ||++|+++|+++. ++.+++|+||+.+...
T Consensus 219 g~~i~-~gi--~vi~tpGHtpG~~~~~i~~-~~~~vlf~GD~~~~~~ 261 (331)
T 1p9e_A 219 NTDLV-PGI--KALASHGHTPGHTTYVVES-QGQKLALLGDLILVAA 261 (331)
T ss_dssp SEECS-TTE--EEEECTTSSTTCEEEEEEE-TTEEEEECTTSCCCHH
T ss_pred CCEEc-ccE--EEEEcCCCChhCEEEEEEE-CCcEEEEEECccCcch
Confidence 44433 244 44444 9999999999985 6778999999998764
No 102
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=98.79 E-value=1.1e-08 Score=103.50 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=68.9
Q ss_pred cEEEeccCchhhhCChhhhc-CCceEEeCHHHHHHHHHH-----------hC-------------CCCcceEEecCCCEE
Q 004877 416 SHWFLTHFHMDHYQGLTRSF-HHGKIYCSLITARLVNMK-----------IG-------------IPWDRLQVLPLNQKT 470 (725)
Q Consensus 416 daIfLTHaH~DHigGLp~~~-~~~pIY~s~~T~~ll~~~-----------lg-------------~~~~~~~~l~~ge~~ 470 (725)
.+||+||.|.||++|++.+. ...+||+++.+...+... +. .+...+..+..++.+
T Consensus 70 ~~vi~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 149 (246)
T 2fhx_A 70 VVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGKVF 149 (246)
T ss_dssp EEEECCSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEECTTTCEEE
T ss_pred EEEEeCCCCccccChHHHHhhcCCEEEEcHHHHHHHHhcchhhhHHHHhhhccccchhhhcccccCCCCceeecCCCCEE
Confidence 37999999999999998532 257999999988776421 11 011123346678889
Q ss_pred EECCEEEEEEe-c-ccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 471 TIAGIDVTCLE-A-NHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 471 ~Iggv~Vt~~~-a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
.+++.+++++. + ||++|+++|+++. + +++|+||+-+.
T Consensus 150 ~~g~~~i~~~~~~pGHt~g~~~~~~~~--~-~~lf~GD~~~~ 188 (246)
T 2fhx_A 150 SFSNELVEVSFPGPAHSPDNVVVYFPK--K-KLLFGGCMIKP 188 (246)
T ss_dssp EETTEEEEEECCCCSSSTTCCEEEETT--T-TEEEEETTCCS
T ss_pred EECCEEEEEEeCCCCCCCCCEEEEEcC--C-CEEEECCEecc
Confidence 99999999984 4 9999999999863 3 49999999764
No 103
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=98.78 E-value=1.4e-08 Score=104.96 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=70.1
Q ss_pred CccEEEeccCchhhhCChhhhc-CCceEEeCHHHHHHHHHHhCCCCcceEEe----cCCCEEEECCEEEEEEecccCCCC
Q 004877 414 DCSHWFLTHFHMDHYQGLTRSF-HHGKIYCSLITARLVNMKIGIPWDRLQVL----PLNQKTTIAGIDVTCLEANHCPGS 488 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~~-~~~pIY~s~~T~~ll~~~lg~~~~~~~~l----~~ge~~~Iggv~Vt~~~agH~pGS 488 (725)
+|++||+||.|.||++|+..+. .+.+||+++.+.+.+........ . ..+ ..++.+.++++++.....||++|+
T Consensus 105 ~i~~VilTH~H~DH~gg~~~~~~~~a~v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~~v~~~~pGHt~g~ 182 (265)
T 2y8b_A 105 PVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVP-A-HSLKALSSSGDVVRFGPVEVFYPGAAHSGDN 182 (265)
T ss_dssp CEEEEECSSSSHHHHTTHHHHHHTTCEEEECHHHHHHHHHTTCCCC-S-EECSSCSSTTEEEEETTEEEEECCSSSSTTC
T ss_pred CeEEEEeCCCChhhcCCHHHHhhCCCeEEECHHHHHHHHhcccccc-c-ccccccCCCCcEEeecCEEEEecCCCCCCCC
Confidence 6899999999999999998532 36899999999988775332111 1 122 556677888888865556999999
Q ss_pred eEEEEeccCCeEEEEecccCCCh
Q 004877 489 IIILFEPQNGKAVLHTGDFRFSE 511 (725)
Q Consensus 489 ~~flIe~~~Gk~IlYTGD~~~~~ 511 (725)
++|+++. . +++|+||+-+..
T Consensus 183 ~~~~~~~--~-~~lf~GD~~~~~ 202 (265)
T 2y8b_A 183 LVVYVPA--V-RVLFGGCAVHEA 202 (265)
T ss_dssp CEEEETT--T-TEEEEETTSCCT
T ss_pred EEEEecC--C-CEEEEccccccC
Confidence 9999863 2 399999998753
No 104
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=98.75 E-value=2.9e-08 Score=109.70 Aligned_cols=89 Identities=21% Similarity=0.342 Sum_probs=75.5
Q ss_pred CCccEEEeccCchhhhCChhhh---c-CCceEEeCHHHHHHHHHHhCCCCcceEEecCCCEEEECCEEEEEEec-c-cCC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRS---F-HHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAGIDVTCLEA-N-HCP 486 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~---~-~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge~~~Iggv~Vt~~~a-g-H~p 486 (725)
.+|++||+||.|.||++|++.+ + ...+||+++.+..+++..++.. .+..+..|+.+.+|+.+++++.+ + |.|
T Consensus 88 ~~IdyIi~TH~h~DH~G~l~~l~~~~~~~~~v~~s~~~~~~l~~~~~~~--~~~~v~dGd~l~lG~~~L~~i~tPg~H~p 165 (410)
T 4dik_A 88 KEITHIIVNHTEPDASGSLPATLKTIGHDVEIIASNFGKRLLEGFYGIK--DVTVVKDGEEREIGGKKFKFVMTPWLHWP 165 (410)
T ss_dssp GGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHHHHHHCCC--CEEECCTTCEEEETTEEEEEEECTTSSST
T ss_pred ccCCEEEeCcCCcchhhhHHHHHHHcCCCCEEEeCHHHHHHHHhhcCcc--ceeEecCCCEEeecceEEEEecCCCCCCC
Confidence 3689999999999999999853 2 4689999999999998877643 46789999999999999999998 6 899
Q ss_pred CCeEEEEeccCCeEEEEecccC
Q 004877 487 GSIIILFEPQNGKAVLHTGDFR 508 (725)
Q Consensus 487 GS~~flIe~~~Gk~IlYTGD~~ 508 (725)
|+++++.+ + ++||||.-
T Consensus 166 ~~~~~y~~---~--iLFsgD~f 182 (410)
T 4dik_A 166 DTMVTYLD---G--ILFSCDVG 182 (410)
T ss_dssp TCEEEEET---T--EEEEETTT
T ss_pred CCeeEEeC---C--ceEccccc
Confidence 99987753 2 89999973
No 105
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=98.75 E-value=9.9e-09 Score=102.65 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=64.8
Q ss_pred CCccEEEeccCchhhhCChhhhc-CCceEEeCHHHHHHHHHHh------------CCC----CcceEEecCCCEEEECCE
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF-HHGKIYCSLITARLVNMKI------------GIP----WDRLQVLPLNQKTTIAGI 475 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~-~~~pIY~s~~T~~ll~~~l------------g~~----~~~~~~l~~ge~~~Iggv 475 (725)
.+|++||+||.|.||++|+..+. ...+||+++.+..++.... ... ......+..+..+..+++
T Consensus 62 ~~i~~ii~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (233)
T 3q6v_A 62 LPINEVINTNYHTDRAGGNAYWKTLGAKIVATQMTYDLQKSQWGSIVNFTRQGNNKYPNLEKSLPDTVFPGDFNLQNGSI 141 (233)
T ss_dssp CCEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCCCSEEESSCEEETTTTE
T ss_pred CCcEEEEECCCChhhhChHHHHhhCCCEEEEcHHHHHHHHhhhHHHHHHHhccccccccccccCCCEEeCCCeEEcCceE
Confidence 57899999999999999999643 4689999999988776421 000 011123343333333456
Q ss_pred EEEEEecccCCCCeEEEEeccCCeEEEEecccCCCh
Q 004877 476 DVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSE 511 (725)
Q Consensus 476 ~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~ 511 (725)
+|...+.||++|+++|++.. .+ ++| ||.-+..
T Consensus 142 ~v~~~~pGHt~g~~~~~~~~--~~-~lf-gD~~~~~ 173 (233)
T 3q6v_A 142 RAMYLGEAHTKDGIFVYFPA--ER-VLY-GNCILKE 173 (233)
T ss_dssp EEECCCCSSSSSCCEEEETT--TT-EEE-CTTTSCS
T ss_pred EEEECCCCCCcCcEEEEecc--CC-EEE-Cceeccc
Confidence 66555569999999999863 33 788 9986653
No 106
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=98.73 E-value=1.8e-08 Score=100.39 Aligned_cols=106 Identities=21% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCceEeCCccc--------------cCCCccEEEeccCchhhhCChhhhc-CCceEEeCHHHHHHHHHHh---------
Q 004877 399 PGTPFRVDAFKY--------------LRGDCSHWFLTHFHMDHYQGLTRSF-HHGKIYCSLITARLVNMKI--------- 454 (725)
Q Consensus 399 pg~~~~ID~f~~--------------~~~~idaIfLTHaH~DHigGLp~~~-~~~pIY~s~~T~~ll~~~l--------- 454 (725)
.+..+.||+... ...+|++||+||.|.||++|+..+. .+.+||+++.+..++....
T Consensus 31 ~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 110 (227)
T 3iog_A 31 AKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWAEIVAFTRK 110 (227)
T ss_dssp SSCEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHHHhcCCCeEEEEeCCCchhhcChHHHHhhCCCeEEECHHHHHHHHHhhHHHHHHhhc
Confidence 445678888741 1247899999999999999999642 4689999999988776321
Q ss_pred CCC------Cc-ceEEecCCCEEEECCEEEEEEe--cccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 455 GIP------WD-RLQVLPLNQKTTIAGIDVTCLE--ANHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 455 g~~------~~-~~~~l~~ge~~~Iggv~Vt~~~--agH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
+.. .. ....+ +..+.+++..++++. .||++|+++|++.. .+ ++| ||.-+.
T Consensus 111 ~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~pGHt~g~~~~~~~~--~~-~lf-gd~l~~ 169 (227)
T 3iog_A 111 GLPEYPDLPLVLPNVVH--DGDFTLQEGKVRAFYAGPAHTPDGIFVYFPD--EQ-VLY-GGCILK 169 (227)
T ss_dssp HCTTSCCCCCCCCSEEE--SSCEEETTTTEEEECCCCSSSSSCCEEEETT--TT-EEE-CGGGSC
T ss_pred CCCCCCCccccCCCEee--cCeEEEcCcEEEEEecCCCCCCCcEEEEecC--CC-EEE-cccccc
Confidence 111 00 01112 234778766666666 49999999999863 33 888 886543
No 107
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=98.72 E-value=1.1e-08 Score=102.99 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=74.7
Q ss_pred CCCceEeCCccc-------------cCCCccEEEeccCchhhhCChhhhc-CCceEEeCHHHHHHHHHHhCCCCcceEEe
Q 004877 399 PGTPFRVDAFKY-------------LRGDCSHWFLTHFHMDHYQGLTRSF-HHGKIYCSLITARLVNMKIGIPWDRLQVL 464 (725)
Q Consensus 399 pg~~~~ID~f~~-------------~~~~idaIfLTHaH~DHigGLp~~~-~~~pIY~s~~T~~ll~~~lg~~~~~~~~l 464 (725)
.+..+.||+... ...+|++||+||.|.||++|+..+. ...+||+++.+.+++..... .... ..+
T Consensus 41 ~~~~iliD~g~~~~~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~-~~~ 118 (228)
T 1jjt_A 41 NAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGK-VQAT-NSF 118 (228)
T ss_dssp TTEEEEESCCSSHHHHHHHHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHHTTCCEEEEHHHHHHHHHTTC-CCCS-EEE
T ss_pred CCcEEEEeCCCChhhHHHHHHHHHHcCCCeeEEEeCCCChhhhccHHHHHhCCCEEEEChHHHHHHHhcCC-cCcc-ccc
Confidence 344577887632 0126899999999999999998533 26799999999888765321 1111 223
Q ss_pred cCCCEEEECCEEEEEE-ec-ccCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 465 PLNQKTTIAGIDVTCL-EA-NHCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 465 ~~ge~~~Iggv~Vt~~-~a-gH~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
. +..+.+++..|+++ .+ ||++|+++|+++. + +++|+||+.+.
T Consensus 119 ~-g~~~~l~~~~i~~~~~~pGHt~g~~~~~~~~--~-~~lf~GD~~~~ 162 (228)
T 1jjt_A 119 S-GVNYWLVKNKIEVFYPGPGHTPDNVVVWLPE--R-KILFGGCFIKP 162 (228)
T ss_dssp C-SSCCEEETTTEEEECCCCSSSTTCCEEEETT--T-TEEEEETTCCT
T ss_pred c-CcceEecCceEEEEecCCCCCCCcEEEEECC--C-cEEEEeccccc
Confidence 2 55667777777776 44 9999999999863 3 49999999753
No 108
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=98.72 E-value=5.6e-09 Score=108.42 Aligned_cols=66 Identities=24% Similarity=0.217 Sum_probs=63.0
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhc-cCCCCCCChhHHHHHHHHHHHHh
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLI-GIGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~-~lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
..|...+|..||+.+||++|.+.|.++.+|+..|+.||++||. +|||+.++|||||+.+|++++..
T Consensus 16 ~~W~~e~V~~WLe~~GL~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el~~~ 82 (265)
T 3tad_C 16 AKWTKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSE 82 (265)
T ss_dssp GGSCHHHHHHHHHHTTCCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHC
T ss_pred hhCChHHHHHHHHHHCHHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 5688999999999999999999999999999999999999996 99999999999999999999864
No 109
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=98.66 E-value=1.1e-08 Score=106.17 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=61.0
Q ss_pred CCcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 232 VDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
++...|.+||++|||+||.+.|..++||+..|..||.+||++|||+..|||++|+.+|+.|+.-.-
T Consensus 90 ~d~~wv~~WL~~IGL~QY~~~F~~~~iDg~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~L~~~~~ 155 (265)
T 3tad_C 90 LDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNF 155 (265)
T ss_dssp CCHHHHHHHHHHHTCGGGHHHHHHHTCCHHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHHHHHTTT
T ss_pred cChHHHHHHHHHcCcHHHHHHHHHcCCCHHHhcccCHHHHHHcCCCcHHhHHHHHHHHHHHhhcCC
Confidence 344568999999999999999999999999999999999999999999999999999999986653
No 110
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=98.59 E-value=4.3e-08 Score=111.67 Aligned_cols=114 Identities=13% Similarity=0.199 Sum_probs=74.7
Q ss_pred CCccEEEeccCchhhhCChhhhc---CCceEEeCHHHHHH-----------------HHH--HhCCCCcceEEecCCCEE
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF---HHGKIYCSLITARL-----------------VNM--KIGIPWDRLQVLPLNQKT 470 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~---~~~pIY~s~~T~~l-----------------l~~--~lg~~~~~~~~l~~ge~~ 470 (725)
.+|++|||||.|.||++|++.+. ...+||+++.+... +.. ..+.+.. ...+..++.+
T Consensus 76 ~~id~vilTH~H~DHiggl~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~g~~~ 154 (547)
T 2bib_A 76 QKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVI-QNITQGDAHF 154 (547)
T ss_dssp CCBSCEECCCSCHHHHTTHHHHHHHSCBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHHHTTCEEE-CSCCTTTTEE
T ss_pred ccccEEEEcCCCccccCCHHHHHHhCCccEEEECcccccccCChHHHHhHHHHHHHHHHHHHHhCCeEE-EeecCCCceE
Confidence 35888999999999999999543 33468887643221 111 1121110 0124567889
Q ss_pred EECCEEEEEEec---cc-----------CCCCeEEEEeccCCeEEEEecccCCChhhhhh-cccCCCCccEEEE
Q 004877 471 TIAGIDVTCLEA---NH-----------CPGSIIILFEPQNGKAVLHTGDFRFSEEMASM-SVLQTCPIHTLIL 529 (725)
Q Consensus 471 ~Iggv~Vt~~~a---gH-----------~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~-~~l~~~~~DlLIl 529 (725)
.+++++|++++. .| ..+|++|+|+. ++.+++|+||+......... .. ....+|+|++
T Consensus 155 ~~g~~~i~~l~~~~~~h~~~~~~~~~~~n~~S~vl~i~~-~~~~iLftGD~~~~~~~e~~l~~-~~~~~DvLkv 226 (547)
T 2bib_A 155 QFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKV-NGKKIYLGGDLDNVHGAEDKYGP-LIGKVDLMKF 226 (547)
T ss_dssp EETTEEEEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEE-TTEEEEECTTCCSTTSHHHHHHH-HHCCCSEEEC
T ss_pred ecCCeeEEEecCccccCccccccccCCCCCCcEEEEEEE-CCEEEEecCCccchhhhhhhhcc-cccceeEEEe
Confidence 999999999973 33 35789999996 78899999999876322111 10 0247899986
No 111
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=98.47 E-value=3.5e-07 Score=106.87 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCceEeCCcccc---------------CCCccEEEeccCchhhhCChhhhc-------CCceEEeCHHHHHHHH------
Q 004877 400 GTPFRVDAFKYL---------------RGDCSHWFLTHFHMDHYQGLTRSF-------HHGKIYCSLITARLVN------ 451 (725)
Q Consensus 400 g~~~~ID~f~~~---------------~~~idaIfLTHaH~DHigGLp~~~-------~~~pIY~s~~T~~ll~------ 451 (725)
+..+.||+.... ..+|++||+||.|.||++|+..+. ...+||+++.+.+.+.
T Consensus 132 ~g~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~~~~~~e~~~~ 211 (658)
T 2cfu_A 132 SGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAAIKENVLA 211 (658)
T ss_dssp SSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHHHHC---CTT
T ss_pred CEEEEEECCCCHHHHHHHHHHHHhhCCCCCceEEEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHHHHHhhhhhhh
Confidence 345789987431 257899999999999999998543 4689999988765431
Q ss_pred ---------HHhCC--CC----------------------cceEEe-cCCCEEEECCEEEEEEec-cc-CCCCeEEEEec
Q 004877 452 ---------MKIGI--PW----------------------DRLQVL-PLNQKTTIAGIDVTCLEA-NH-CPGSIIILFEP 495 (725)
Q Consensus 452 ---------~~lg~--~~----------------------~~~~~l-~~ge~~~Iggv~Vt~~~a-gH-~pGS~~flIe~ 495 (725)
..++. +. .....+ ..++.+.++|.+|+++.+ || ++|+++|++..
T Consensus 212 g~~~~~r~~~~~g~~lp~~~~~~v~~~l~~~~~~g~~~~~~p~~~~~~dG~~l~lgg~~l~vi~tPGHhTpg~i~~~~p~ 291 (658)
T 2cfu_A 212 GNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPR 291 (658)
T ss_dssp HHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECTTEEEEEETTEEEEEEECTTSSSSSBEEEEETT
T ss_pred hhHHHHHHHHHhccCCChhhhhhhhhcccccccCCCccCCCCcEEEecCceEEEECCEEEEEEeCCCCCCCCcEEEEECC
Confidence 12221 00 011334 467788899999999887 88 99999999863
Q ss_pred cCCeEEEEecccCCC
Q 004877 496 QNGKAVLHTGDFRFS 510 (725)
Q Consensus 496 ~~Gk~IlYTGD~~~~ 510 (725)
. +++|+||.-+.
T Consensus 292 --~-~vLftGD~v~~ 303 (658)
T 2cfu_A 292 --Q-KALLMAENVVG 303 (658)
T ss_dssp --T-TEEECTTTSCS
T ss_pred --C-CEEEEeccccc
Confidence 3 39999998754
No 112
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=98.42 E-value=2e-07 Score=96.70 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=65.5
Q ss_pred CCccEEEeccCchhhhCChhhhc-CCceEEeCHHHHHHHHHHhCCCCcce------EEecCCCEEEECCEEEEEEecccC
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF-HHGKIYCSLITARLVNMKIGIPWDRL------QVLPLNQKTTIAGIDVTCLEANHC 485 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~-~~~pIY~s~~T~~ll~~~lg~~~~~~------~~l~~ge~~~Iggv~Vt~~~agH~ 485 (725)
..|++||+||.|.||++|+..+. ..+++|+++.+.+++........... ..+..+..+.++++.+.....||+
T Consensus 111 ~~I~~Ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pgHT 190 (270)
T 4eyb_A 111 LPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHT 190 (270)
T ss_dssp CCEEEEEECSSSHHHHTTHHHHHHTTCEEEEEHHHHHHGGGGTCCCCSEEECBCTTSBBCGGGSTTCTTEEEECCCSSSS
T ss_pred CceEEEEeCCCChhhcCcHHHHHHCCCeEEECHHHHHHHHhcCccccccccCCCCceeecCceeeecCceeEEecccccC
Confidence 46899999999999999998543 35899999999888765322111111 112222333345565555556999
Q ss_pred CCCeEEEEeccCCeEEEEecccCCCh
Q 004877 486 PGSIIILFEPQNGKAVLHTGDFRFSE 511 (725)
Q Consensus 486 pGS~~flIe~~~Gk~IlYTGD~~~~~ 511 (725)
+|++++++.. . +++|+||+-+..
T Consensus 191 ~g~~~~~~~~--~-~vLfsGD~l~~~ 213 (270)
T 4eyb_A 191 SDNITVGIDG--T-DIAFGGCLIKDS 213 (270)
T ss_dssp SSCCEEEETT--S-SEEECTTTCCCT
T ss_pred CCCEEEEecC--C-cEEEEeCeecCC
Confidence 9999998863 3 399999987643
No 113
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=98.34 E-value=4.6e-07 Score=95.82 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCCCcccHHHHHHH-CCChh-hHHHHhhcCCCHHHHhcCChhhhc-cCCCCCCChhHHHHHHHHHHHHhhcc
Q 004877 230 KAVDVSPVVEFLHS-LGLAR-YEEAFVREEIDWDTLQWLTEEDLI-GIGVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 230 ~~~~~~~v~~wL~~-lgL~~-Y~~~F~~~~id~~~l~~Lt~~DL~-~lGI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
..|...+|..||+. +||++ |+..|.++.+++..|+.||++||. +|||..++|||||+.||+++.....+
T Consensus 37 s~W~~~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~~~~sp 108 (334)
T 3tac_B 37 AQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSP 108 (334)
T ss_dssp GGCCHHHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hhCCcHHHHHHHHHHhcChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC
Confidence 55888999999999 89998 999999999999999999999995 99999999999999999999877654
No 114
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1e-06 Score=75.19 Aligned_cols=62 Identities=29% Similarity=0.282 Sum_probs=55.6
Q ss_pred CCCcccHHHHHHHCCChhh-HHHHhhcCCCHHHHhcCChhhhc-cCCCCCCChhHHHHHHHHHHH
Q 004877 231 AVDVSPVVEFLHSLGLARY-EEAFVREEIDWDTLQWLTEEDLI-GIGVTALGPRKKILHTLCEIK 293 (725)
Q Consensus 231 ~~~~~~v~~wL~~lgL~~Y-~~~F~~~~id~~~l~~Lt~~DL~-~lGI~~~G~RkkIl~aI~~l~ 293 (725)
.|+...|++||..|||++| ++.|.+|.||+..|+.|++++|+ ++|++ .=+.|||+++|.-.|
T Consensus 17 ~lSv~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~ls-~Lq~kKi~~fI~GWr 80 (84)
T 2dkz_A 17 GLSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSEDFKLS-KLQVKKIMQFINGSG 80 (84)
T ss_dssp SCCHHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCCC-HHHHHHHHHHHHCCC
T ss_pred hcCHHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCHHHHHhhcCCC-HHHHHHHHHHHhcCC
Confidence 4788999999999999975 79999999999999999999996 69997 778999999996443
No 115
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=98.21 E-value=4.8e-07 Score=77.45 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=61.5
Q ss_pred CCCCCcccHHHHH-HHCCChh---hHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHH
Q 004877 229 QKAVDVSPVVEFL-HSLGLAR---YEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 229 ~~~~~~~~v~~wL-~~lgL~~---Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~ 294 (725)
...|+...|..|+ ..+|+.. .++.|..|.|+++.|+.|+.+|||+|+|.++|.|.|+...|..||.
T Consensus 9 v~~Wt~~~V~~W~~~~lg~~d~d~~~~~f~~ndItG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~Lr~ 78 (85)
T 1uqv_A 9 FSQWSVDDVITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINKMRD 78 (85)
T ss_dssp TTTCCHHHHHHHHHHHHSSCTTSTHHHHHHHSCCCGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhCCCCccHHHHHHHHcCCchhhHHHcCHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3568999999999 8889887 7899999999999999999999999999999999999999999983
No 116
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=98.11 E-value=3e-06 Score=71.55 Aligned_cols=64 Identities=28% Similarity=0.297 Sum_probs=55.1
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHhhc
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
...+|+.||..+|++.|++.|.+.++ ++..|-.++-+||..|.|+ -.||.||+.++.++++...
T Consensus 5 ~D~Sv~s~Lt~LGc~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIp-e~~R~kIWk~l~e~~q~~~ 69 (80)
T 1dxs_A 5 ADPSLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP-EQYRMTIWRGLQDLKQGHD 69 (80)
T ss_dssp ---CHHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCC-TTTHHHHHHHHHHC-----
T ss_pred CCccHHHHHHhcCchHHHHHHHHcCcccchhhccCCHHHHHhCCCC-HHHHHHHHhhHHHhccccC
Confidence 34679999999999999999999999 9999999999999999999 9999999999999996643
No 117
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=98.10 E-value=6.9e-07 Score=88.24 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCCceEeCCcccc---------CCCccEEEeccCchhhhCChhhhc--CCceEEeCHHHHHHHHHHhCCCCcceEEecCC
Q 004877 399 PGTPFRVDAFKYL---------RGDCSHWFLTHFHMDHYQGLTRSF--HHGKIYCSLITARLVNMKIGIPWDRLQVLPLN 467 (725)
Q Consensus 399 pg~~~~ID~f~~~---------~~~idaIfLTHaH~DHigGLp~~~--~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~g 467 (725)
++..+.||+.... ..++++||+||. ||++|+..+. ...+||+++.+...+.. + ....+..+
T Consensus 32 ~~~~iliD~g~~~~~~~~~l~~~g~i~~ii~TH~--DH~gg~~~~~~~~~a~v~~~~~~~~~~~~----~--~~~~~~~g 103 (201)
T 2p97_A 32 PEGNILIDPVALSNHDWKHLESLGGVVWIVLTNS--DHVRSAKEIADQTYTKIAGPVAEKENFPI----Y--CDRWLSDG 103 (201)
T ss_dssp TTCCEEESCCCCCHHHHHHHHHTTCCSEEECSSG--GGCTTHHHHHHHSCCEEEEEGGGTTSCSS----C--CSEEECTT
T ss_pred CCeeEEEECCCCcHHHHHHHHhcCCCCEEEECCc--hhhhhHHHHHHhcCCEEEEcHhHhhhhcc----c--CceecCCC
Confidence 3456788887321 127999999999 9999998532 24899999887654321 1 12455666
Q ss_pred CEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCCh
Q 004877 468 QKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSE 511 (725)
Q Consensus 468 e~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~ 511 (725)
+.+. .++++...++||++|+++|+++ + +++|+||+.+..
T Consensus 104 ~~~~-~~~~~~~~p~gHt~g~~~~~~~--~--~~lf~GD~~~~~ 142 (201)
T 2p97_A 104 DELV-PGLKVMELQGSKTPGELALLLE--E--TTLITGDLVRAY 142 (201)
T ss_dssp CBSS-TTEEEEEECSSSSTTEEEEEET--T--TEEEECSSEEBS
T ss_pred CEEc-ceEEEEECCCCCCCCcEEEEEc--C--CEEEECcccccc
Confidence 6543 2677777778999999999986 2 499999997654
No 118
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=97.22 E-value=9.3e-07 Score=103.30 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCccEEEeccCchhhhCChhhhc-------CCceEEeCHHHHHHH--H-------------HHhCC--CC----------
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF-------HHGKIYCSLITARLV--N-------------MKIGI--PW---------- 458 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~-------~~~pIY~s~~T~~ll--~-------------~~lg~--~~---------- 458 (725)
.+|++||+||.|.||++|+..+. ...+||+++.+.+.+ . ..++. +.
T Consensus 170 ~~I~~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~~e~~~~e~~~~g~~~~~r~~~~~G~~lp~~~~~~~~~~l 249 (668)
T 2yhe_A 170 KPIVAVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGFMEHAVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGL 249 (668)
Confidence 35789999999999999998543 357899998863211 1 11110 00
Q ss_pred -------c-------ceEEecCCCEEEECCEEEEEEec-c-cCCCCeEEEEeccCCeEEEEecccCCC
Q 004877 459 -------D-------RLQVLPLNQKTTIAGIDVTCLEA-N-HCPGSIIILFEPQNGKAVLHTGDFRFS 510 (725)
Q Consensus 459 -------~-------~~~~l~~ge~~~Iggv~Vt~~~a-g-H~pGS~~flIe~~~Gk~IlYTGD~~~~ 510 (725)
. ....+..++.+.++|.+++++.+ | |++|+++|++.. . +++|+||+-+.
T Consensus 250 ~~~~~~~~~~~~~~P~~~~~~dg~~l~lgg~~l~vi~tPG~Htpg~i~~~~p~--~-~vLftGD~~~~ 314 (668)
T 2yhe_A 250 FKTTATNATNTLVAPNVLIEKPYERHTVDGVELEFQLTLGSEAPSDMNIYLPQ--F-KVLNTADNAPP 314 (668)
Confidence 0 00112356678889999998887 5 999999999863 2 49999998653
No 119
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=97.97 E-value=6.2e-06 Score=87.27 Aligned_cols=64 Identities=25% Similarity=0.318 Sum_probs=58.6
Q ss_pred CcccHH-HHHHHCCChhhHHHHhhcCCCHHHHhcCChhhh-ccCCCCCCChhHHHHHHHHHHHHhh
Q 004877 233 DVSPVV-EFLHSLGLARYEEAFVREEIDWDTLQWLTEEDL-IGIGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 233 ~~~~v~-~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL-~~lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
+..-|. .||..|||.||...|..+.||+..|-.|+.+|| ..|||+...||++|+.+|+-||.-.
T Consensus 161 dh~WV~~~WL~dIGLpQY~~~F~~~~VDgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr~~~ 226 (334)
T 3tac_B 161 NHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLN 226 (334)
T ss_dssp CHHHHHHTHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCcchhhhccccChHHhHHHHHhcCcchhhhhhccHHHHHhccCCCcHHHHHHHHHHHHHhhhcC
Confidence 334566 899999999999999999999999999999999 7999999999999999999997554
No 120
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=97.92 E-value=2e-05 Score=82.25 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=62.9
Q ss_pred CccEEEeccCchhhhCChhhh---cCCceEEeCHHHHH-HHHHH-------hC--CC-----CcceEEecCCCEEEEC-C
Q 004877 414 DCSHWFLTHFHMDHYQGLTRS---FHHGKIYCSLITAR-LVNMK-------IG--IP-----WDRLQVLPLNQKTTIA-G 474 (725)
Q Consensus 414 ~idaIfLTHaH~DHigGLp~~---~~~~pIY~s~~T~~-ll~~~-------lg--~~-----~~~~~~l~~ge~~~Ig-g 474 (725)
++++||+||.|.||++|++.+ +...+||+++.+.+ .+... .+ .+ ...+..++ .++++. +
T Consensus 68 ~i~~v~lTH~H~DH~ggl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~i~~g 145 (284)
T 2p4z_A 68 RIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLID--KDAEIEEG 145 (284)
T ss_dssp GCCEEECCCSCHHHHTTHHHHHHHCTTCEEEEEGGGGSCEEEECSSSCEEECSCCHHHHHHHGGGEEEES--SCEEEETT
T ss_pred hCCEEEECCCCchhhccHHHHHHHcCCCceecCHHHHHHHhccCccccccccccccchhhhcCceEEEeC--CCeEEeCC
Confidence 589999999999999999853 35689999988753 11000 00 00 01233333 345563 4
Q ss_pred -EEEEEEecccCCC---CeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCcc--EEEEecCC
Q 004877 475 -IDVTCLEANHCPG---SIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIH--TLILDTTY 533 (725)
Q Consensus 475 -v~Vt~~~agH~pG---S~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~D--lLIlEaTy 533 (725)
+.+..++..|... ..+|+++. +.|++|. +.++.... ..+.| +||++|.+
T Consensus 146 i~~i~~~~~~h~~~~~~g~~~~~~~-----~~y~~D~-~~de~~~~----~~~~dglvli~gcsH 200 (284)
T 2p4z_A 146 FYVITNTDITYDNEFTTKNFFVEKE-----GKRIPDK-FLDEVFVV----VKEEDGINVVTGCSH 200 (284)
T ss_dssp EEEECSCCCCSCCHHHHTTEEEEET-----TEEEECC-CTTCCEEE----EEETTEEEEEESSCT
T ss_pred EEEEeeeCCccccccCCCceEEEcC-----CCEecCC-CCCceEEE----EEcCCcEEEEECCCC
Confidence 4455566566321 12477763 4799994 44333221 23667 77888763
No 121
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=97.84 E-value=4.4e-06 Score=79.58 Aligned_cols=57 Identities=16% Similarity=0.331 Sum_probs=52.5
Q ss_pred CCCCcccHHHHHHH-CCChhhHHHHhhcCCCHHHHhcCChhh----hccCCCCCCChhHHHH
Q 004877 230 KAVDVSPVVEFLHS-LGLARYEEAFVREEIDWDTLQWLTEED----LIGIGVTALGPRKKIL 286 (725)
Q Consensus 230 ~~~~~~~v~~wL~~-lgL~~Y~~~F~~~~id~~~l~~Lt~~D----L~~lGI~~~G~RkkIl 286 (725)
..|+...|.+||.. ++|++|.+.|.++.|++.+|..|+..+ +..|||+..+||.||.
T Consensus 79 ~nWTvedV~~WL~~~v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~ 140 (150)
T 2l5y_A 79 HNWTLEDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ 140 (150)
T ss_dssp HHCCHHHHHHHHHHHTCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH
T ss_pred hhCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH
Confidence 46999999999977 599999999999999999999999876 4599999999999998
No 122
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=97.69 E-value=1.2e-05 Score=76.49 Aligned_cols=61 Identities=23% Similarity=0.323 Sum_probs=53.7
Q ss_pred CCCCcccHHHHHHH-CCChhhHHHHhhcCCCHHHHhcCChhh---h-ccCCCCCCChhHHHH-HHHH
Q 004877 230 KAVDVSPVVEFLHS-LGLARYEEAFVREEIDWDTLQWLTEED---L-IGIGVTALGPRKKIL-HTLC 290 (725)
Q Consensus 230 ~~~~~~~v~~wL~~-lgL~~Y~~~F~~~~id~~~l~~Lt~~D---L-~~lGI~~~G~RkkIl-~aI~ 290 (725)
..|+...|.+||.. ++|++|.+.|.++.|++.+|..|+..+ | ..|||+..+||.||. +|+.
T Consensus 79 ~nWTvedV~~WL~~~v~LpqY~~~Fr~~~I~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~lkald 145 (150)
T 2k60_A 79 YNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALD 145 (150)
T ss_dssp HHCCHHHHHHHHHHHHCCTTHHHHHHHHCCSTTHHHHHSSCHHHHCSSCSCSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHHHhhccccHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45999999999944 499999999999999999999999996 4 699999999999987 4543
No 123
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.00051 Score=59.30 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCCCCcccHHHHHHHCCChhhHHHHh-hcCCCHHHHhcCChhhhccC
Q 004877 229 QKAVDVSPVVEFLHSLGLARYEEAFV-REEIDWDTLQWLTEEDLIGI 274 (725)
Q Consensus 229 ~~~~~~~~v~~wL~~lgL~~Y~~~F~-~~~id~~~l~~Lt~~DL~~l 274 (725)
...|+...|++||+..|+.+ ++.|. +++||+.+|+.||+.||+..
T Consensus 19 V~~Wsp~~VadWLkk~g~~~-cd~lv~Kh~IDG~~lL~LtE~Dlrk~ 64 (90)
T 2eap_A 19 VLGWDPDSLADYFKKLNYKD-CEKAVKKYHIDGARFLNLTENDIQKF 64 (90)
T ss_dssp HTTCCTTTHHHHHHHTTCHH-HHHHHHHTTCCHHHHHTCCHHHHTTS
T ss_pred ccccCHHHHHHHHHHcCCch-HHHHHHHhccCchhhhcccHHHhccC
Confidence 35689999999999999999 88886 88899999999999999974
No 124
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=95.52 E-value=0.0046 Score=64.36 Aligned_cols=44 Identities=20% Similarity=0.122 Sum_probs=33.9
Q ss_pred eEeCCccccC---------CCc-cEEEeccCchhhhCChhhhcCCceEEeCHHHH
Q 004877 403 FRVDAFKYLR---------GDC-SHWFLTHFHMDHYQGLTRSFHHGKIYCSLITA 447 (725)
Q Consensus 403 ~~ID~f~~~~---------~~i-daIfLTHaH~DHigGLp~~~~~~pIY~s~~T~ 447 (725)
+.||+..... -++ ++|+|||.|.||++|++.+ ...+||+++...
T Consensus 40 iLiD~G~~~~l~~~l~~~gi~~~~~IvlTH~H~DH~ggl~~l-~~~~v~~~~~~~ 93 (267)
T 3h3e_A 40 VLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYL-SGKRVWLRKEAL 93 (267)
T ss_dssp EEECCCSSSHHHHHHHHTTCCCCSEEECSCSCHHHHGGGGGC-CSCEEEEEGGGG
T ss_pred EEEECCCcHHHHHHHHHCCcCcCCEEEECCCChhhhCCHHHh-cCCEEEECHHHH
Confidence 7788874410 122 8999999999999999976 668999987654
No 125
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.014 Score=48.57 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=47.6
Q ss_pred HHHHHCC-----ChhhHHHHhhcCCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHH
Q 004877 239 EFLHSLG-----LARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292 (725)
Q Consensus 239 ~wL~~lg-----L~~Y~~~F~~~~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l 292 (725)
+|.-+.| ..+|...|.++.|+.+.|..|+.+=|++|||+ .|+.-+|++.+...
T Consensus 7 ~FFl~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~-eGDIIrVmk~l~~k 64 (72)
T 3idw_A 7 EFFLNCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLR-EGDIVRVMKHLDKK 64 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCc-hhhHHHHHHHHHHH
Confidence 4556666 57999999999999999999999999999998 89999999998765
No 126
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=78.22 E-value=0.85 Score=39.91 Aligned_cols=62 Identities=19% Similarity=0.093 Sum_probs=46.5
Q ss_pred CCCCcccHHHHHHHCCChhhH---HHHhhcCCCHHHHhcCChhhhcc-CCCCCCChhHHHHHHHHHHHHhh
Q 004877 230 KAVDVSPVVEFLHSLGLARYE---EAFVREEIDWDTLQWLTEEDLIG-IGVTALGPRKKILHTLCEIKKEY 296 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~---~~F~~~~id~~~l~~Lt~~DL~~-lGI~~~G~RkkIl~aI~~l~~~~ 296 (725)
..|+...|..||.-.+ .+|. -.|...++||.+|+.|+.+|+.. +|. .|+- +...++.|+++.
T Consensus 13 ~~WS~~~V~~WL~w~~-~ef~L~~i~~~~f~mdGk~Lc~Lt~edF~~~~p~--~Gdi--L~~hL~~Lk~~~ 78 (93)
T 2qar_B 13 IYWSRDDVAQWLKWAE-NEFSLSPIDSNTFEMNGKALLLLTKEDFRYRSPH--SGDV--LYELLQHILKQR 78 (93)
T ss_dssp GGCCHHHHHHHHHHHH-HHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHCTT--THHH--HHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH-HhcCCCCcchhcCCCCHHHHHcCCHHHHhhhCCc--chHH--HHHHHHHHHHhc
Confidence 5689999999996655 5555 22456679999999999999986 554 4664 777788777654
No 127
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.67 E-value=3.4 Score=36.45 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCcccHHHHHHHCCChhh-HHHHhhcCCCHHHHhcCChhhhccC-CCCCCChhHHHHHHHHHHHHhhc
Q 004877 231 AVDVSPVVEFLHSLGLARY-EEAFVREEIDWDTLQWLTEEDLIGI-GVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 231 ~~~~~~v~~wL~~lgL~~Y-~~~F~~~~id~~~l~~Lt~~DL~~l-GI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
......|..||..-|++.| ++.|. .+++..|+.|+.+||+.+ | .--|+...|..-|..+.
T Consensus 33 ~Ssp~EV~~WL~~kgFS~~tv~~Lg--~ltGaqLl~Ltk~eL~~vCg-----EG~RlysqL~vqk~~le 94 (99)
T 2e8m_A 33 DSTPEDVKTWLQSKGFNPVTVNSLG--VLNGAQLFSLNKDELRTVCP-----EGARVYSQITVQKAALS 94 (99)
T ss_dssp TCCTTHHHHHHHHHTCCHHHHHHTS--SSCHHHHHHCCHHHHHHHCT-----THHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHc--CCCHHHHHcCCHHHHHHHCC-----chHHHHHHHHHHHHHHh
Confidence 3556789999999999998 88773 579999999999999988 5 34567777777666554
No 128
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=75.56 E-value=1.5 Score=37.24 Aligned_cols=62 Identities=8% Similarity=0.070 Sum_probs=42.6
Q ss_pred CCCCcccHHHHHHHCCChhh-HH----HHhhcCCCHHHHhcCChhhhcc-CCCCCCChhHHHHHHHH-HHHHhh
Q 004877 230 KAVDVSPVVEFLHSLGLARY-EE----AFVREEIDWDTLQWLTEEDLIG-IGVTALGPRKKILHTLC-EIKKEY 296 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y-~~----~F~~~~id~~~l~~Lt~~DL~~-lGI~~~G~RkkIl~aI~-~l~~~~ 296 (725)
..|+...|..||.-. ..+| .+ .|..-.+||.+|+.|+.+|+.+ .+ ..|+- +...++ .|+..+
T Consensus 12 ~~Ws~~~V~~WL~w~-~~e~~l~l~~~~~~~f~m~G~~Lc~ls~edF~~~~p--~~Gdi--L~~hL~~~l~~~~ 80 (82)
T 1sv0_C 12 RDWTRADVWKWLINM-AVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVP--VGGKM--LYRDFRVRLARAM 80 (82)
T ss_dssp GGCCHHHHHHHHHHH-HHHHTCCCCTHHHHTCCSCHHHHHHCCHHHHHHHCT--TTHHH--HHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHH-HHHhCCCCCCCccccCCCCHHHHHhCCHHHHHhhCC--CchHH--HHHHHHHHHHHHH
Confidence 568999999999533 3333 11 2555679999999999999987 45 46665 666666 344433
No 129
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=71.96 E-value=4.6 Score=35.63 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHCCChhh-HHHHhhcCCCHHHHhcCChhhhccC-CCCCCChhHHHHHHHHHHHHhhc
Q 004877 232 VDVSPVVEFLHSLGLARY-EEAFVREEIDWDTLQWLTEEDLIGI-GVTALGPRKKILHTLCEIKKEYS 297 (725)
Q Consensus 232 ~~~~~v~~wL~~lgL~~Y-~~~F~~~~id~~~l~~Lt~~DL~~l-GI~~~G~RkkIl~aI~~l~~~~~ 297 (725)
.....|..||..-|++.| +..|. .+++..|+.|+.+||+.+ | .-|. |+...|..-|..+.
T Consensus 24 Ssp~EV~~WL~~kgFS~~tv~~Lg--~ltGaqLf~Ltk~eL~~vCg--~EG~--RlysqL~~qk~~le 85 (99)
T 1wwu_A 24 SGPDEVRAWLEAKAFSPRIVENLG--ILTGPQLFSLNKEELKKVCG--EEGV--RVYSQLTMQKAFLE 85 (99)
T ss_dssp CCHHHHHHHHHHHTCCTTHHHHTT--SSCHHHHHTCCHHHHHHHHT--TTHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHc--CCCHHHHHcCCHHHHHHHCc--chhH--HHHHHHHHHHHHHh
Confidence 456779999999999999 88773 579999999999999988 6 3555 46667766666654
No 130
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=61.87 E-value=3.7 Score=34.43 Aligned_cols=30 Identities=10% Similarity=0.406 Sum_probs=24.9
Q ss_pred ccHHHHHHHCCChhhHHHHhhcCC--CHHHHh
Q 004877 235 SPVVEFLHSLGLARYEEAFVREEI--DWDTLQ 264 (725)
Q Consensus 235 ~~v~~wL~~lgL~~Y~~~F~~~~i--d~~~l~ 264 (725)
..-.+||+.-|++||.+.|.+..+ |...+.
T Consensus 22 ~eAC~WLRaaGFPQYAqlyed~qFPIdi~~Vk 53 (81)
T 2h80_A 22 KEACDWLRAAGFPQYAQLYEDSQFPINIVAVK 53 (81)
T ss_dssp HHHHHHHHHTTCHHHHHTTTTTCCCSCHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHhhcccccccHHHhc
Confidence 345599999999999999999876 777654
No 131
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=49.29 E-value=12 Score=32.13 Aligned_cols=29 Identities=14% Similarity=0.365 Sum_probs=24.3
Q ss_pred cHHHHHHHCCChhhHHHHhhcCC--CHHHHh
Q 004877 236 PVVEFLHSLGLARYEEAFVREEI--DWDTLQ 264 (725)
Q Consensus 236 ~v~~wL~~lgL~~Y~~~F~~~~i--d~~~l~ 264 (725)
.-.+||+.-|++||.+.|.+..+ |...+.
T Consensus 25 eAC~WLRaaGFPQYAqlyed~~FPIdi~~Vk 55 (91)
T 2dky_A 25 EACDWLRATGFPQYAQLYEDFLFPIDISLVK 55 (91)
T ss_dssp HHHHHHHHHTCTTHHHHHHTTCCSCCHHHHH
T ss_pred HHHHHHHHcCChHHHHhcccccccccHHHhc
Confidence 34599999999999999999876 777654
No 132
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=46.23 E-value=3.6 Score=35.61 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=41.3
Q ss_pred CCCCcccHHHHHHHCCChhhH---HHHhhcCCCHHHHhcCChhhhcc-CCCCCCChhHHHHHHHHHHHHh
Q 004877 230 KAVDVSPVVEFLHSLGLARYE---EAFVREEIDWDTLQWLTEEDLIG-IGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~---~~F~~~~id~~~l~~Lt~~DL~~-lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
..|+...|..||.-. ..+|. ..|...++||.+|+.|+.+|+.. +|. .| ..+..-++.++..
T Consensus 13 ~~WS~~~V~~WL~w~-~~ef~L~~~~~~~f~mdGk~Lc~Ls~edF~~~~p~--~G--diL~~hL~~l~~~ 77 (89)
T 1ji7_A 13 IYWSRDDVAQWLKWA-ENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPH--SG--DELYELLQHILKQ 77 (89)
T ss_dssp GGCCHHHHHHHHHHH-HHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCTT--TH--HHHHHHHHHHHHC
T ss_pred hhCCHHHHHHHHHHH-HHhcCCCCCchhcCCCCHHHHHcCCHHHHHhHcCC--ch--HHHHHHHHHHHhC
Confidence 568999999999555 34443 13445578999999999999874 443 24 3345556666554
No 133
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=42.59 E-value=6.7 Score=26.09 Aligned_cols=22 Identities=41% Similarity=0.862 Sum_probs=14.7
Q ss_pred CcccCCccCCCCCCcHHHHHhhccccccc
Q 004877 169 SVRCPLCGIDISDLNEELRQAHTNNCLDK 197 (725)
Q Consensus 169 ~~~cp~c~~~~~~l~~~~r~~h~~~cld~ 197 (725)
.|+||||+.-.- -+|.|++||.
T Consensus 6 ~vqcpvcqq~mp-------aahin~hldr 27 (29)
T 3vhs_A 6 QVQCPVCQQMMP-------AAHINSHLDR 27 (29)
T ss_dssp EEECTTTCCEEE-------GGGHHHHHHH
T ss_pred eeeChHHHHhCc-------HHHHHHHHhc
Confidence 389999975432 3577776653
No 134
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=39.59 E-value=6 Score=37.37 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=45.9
Q ss_pred CcccHHHHHHHCCChhhHHHHhhcCCCHHHHhcCChhhhccC----CCCCCChhHHHHHHHHHHHH
Q 004877 233 DVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGI----GVTALGPRKKILHTLCEIKK 294 (725)
Q Consensus 233 ~~~~v~~wL~~lgL~~Y~~~F~~~~id~~~l~~Lt~~DL~~l----GI~~~G~RkkIl~aI~~l~~ 294 (725)
..+.+..||+-+||.+-.=.=.....++++|+.|+++++++| |.. -+.-+|+..|.+-||+
T Consensus 82 ~yP~l~~WLrvVgl~~esiq~i~~~~TLe~LLemsd~evr~~L~~~ga~-eEEcrRL~~Al~nLRk 146 (149)
T 2lpe_A 82 SYPRFSDWLYIFNVRPEVVQEIPQELTLDALLEMDEAKAKEMLRRWGAS-TEECSRLQQALTCLRK 146 (149)
T ss_dssp GCSCSTTTHHHHTCCHHHHTTSCTTCSHHHHTTSCHHHHHHHHHTTTCC-THHHHHHHHHHTTGGG
T ss_pred cCchHHHHHHHhccCHHHHHHhhhhccHHHHHhcCHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Confidence 345689999999987654333334459999999999999874 644 5668888888887765
No 135
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=39.57 E-value=14 Score=43.26 Aligned_cols=44 Identities=5% Similarity=0.021 Sum_probs=40.4
Q ss_pred EEeccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 679 YEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 679 ~~vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
.-+.|++=+|.+-|+..+..++|+++| ++||..+..+.|++.+.
T Consensus 656 ~fiD~~g~~D~rs~~~i~~~~~Prkli--lv~g~~~~~~~l~~~~~ 699 (717)
T 2i7x_A 656 VILNLQSLVDQRSASIIWPSLKSRKIV--LSAPKQIQNEEITAKLI 699 (717)
T ss_dssp EECCCCCSCCHHHHHHHGGGSCCSEEE--ECSCGGGSCHHHHHHHH
T ss_pred EEEecCCCCcHHHHHHHHHhcCCcEEE--EeCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999 99999999999988753
No 136
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=35.10 E-value=9.8 Score=40.23 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHHCCChhhHHHHhhcCC-CHHHHhcCC
Q 004877 230 KAVDVSPVVEFLHSLGLARYEEAFVREEI-DWDTLQWLT 267 (725)
Q Consensus 230 ~~~~~~~v~~wL~~lgL~~Y~~~F~~~~i-d~~~l~~Lt 267 (725)
....+.+..+||..+.+++|.+.|.++++ +++.+..|+
T Consensus 335 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (373)
T 2qol_A 335 DITTFRTTGDWLNGVWTAHCKEIFTGVEYSSCDTIAKIS 373 (373)
T ss_dssp ---------------------------------------
T ss_pred cccCCCCHHHHHHhccchHHHHHHHhcCCCcHHHHhccC
Confidence 34456678899999999999999999999 999888775
No 137
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.35 E-value=46 Score=29.09 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=42.8
Q ss_pred CCCCcccHHHHH----HHCCChhhHHHHhhc-CCCHHHHhcCChhhhccCCCCCCChhHHHHHHHHHHHHh
Q 004877 230 KAVDVSPVVEFL----HSLGLARYEEAFVRE-EIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295 (725)
Q Consensus 230 ~~~~~~~v~~wL----~~lgL~~Y~~~F~~~-~id~~~l~~Lt~~DL~~lGI~~~G~RkkIl~aI~~l~~~ 295 (725)
..|+...|..|| +..+|... .+..- .+++.+|+.|+.+|+.++--...|+ .+...++-||+.
T Consensus 25 ~~Ws~~~V~~WL~W~~~ef~L~~v--~~~~F~~m~G~~LC~ls~edF~~~~~~~~Gd--iL~~hL~~Lk~~ 91 (98)
T 1x66_A 25 TLWTQEHVRQWLEWAIKEYSLMEI--DTSFFQNMDGKELCKMNKEDFLRATTLYNTE--VLLSHLSYLRES 91 (98)
T ss_dssp GGCCTTHHHHHHHHHHHHTTCCSC--CGGGGTTCCHHHHHHCCHHHHHTTSCHHHHH--HHHHHHHHHHTC
T ss_pred hhcCHHHHHHHHHHHHHhcCCCCC--ChhhCCCCCHHHHHcCCHHHHHHHcCCCchH--HHHHHHHHHHhc
Confidence 568999999999 44556432 23333 7899999999999998763222343 366777777764
No 138
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.48 E-value=11 Score=33.17 Aligned_cols=13 Identities=38% Similarity=1.224 Sum_probs=10.9
Q ss_pred CcccCCccCCCCC
Q 004877 169 SVRCPLCGIDISD 181 (725)
Q Consensus 169 ~~~cp~c~~~~~~ 181 (725)
+..||+||.+|..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4679999999884
No 139
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.19 E-value=15 Score=26.12 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=13.0
Q ss_pred CCCcccCCccCCCCCCc
Q 004877 167 DESVRCPLCGIDISDLN 183 (725)
Q Consensus 167 ~~~~~cp~c~~~~~~l~ 183 (725)
.+++.||+|-.++.+-.
T Consensus 3 ~EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSAD 19 (34)
T ss_dssp SEEEECTTTCCEESSHH
T ss_pred CcccCCcHHHHHcCCHH
Confidence 45699999988877643
No 140
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=21.92 E-value=49 Score=32.64 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=32.3
Q ss_pred cCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 683 YSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 683 yS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
-..|.+.+|..++++.++|+++||++-.. ...+.|++.|.
T Consensus 184 ~~~h~~~~ea~~~~~~l~~k~vip~H~~~--~~~~~~~~~l~ 223 (235)
T 3kl7_A 184 QPYTMTVSQAAKAARMFSPKILYPYHYGD--TKIGELKDALK 223 (235)
T ss_dssp TTTSCCHHHHHHHHHHHCCSEEEEESCTT--CCTTHHHHHTT
T ss_pred CCcccCHHHHHHHHHHcCCCEEEEEcCCC--CCHHHHHHHHh
Confidence 35699999999999999999999877655 45667777654
No 141
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=21.43 E-value=86 Score=25.88 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=30.9
Q ss_pred HHHHHCCChhhHHHH-hhcCC-CHHHHhcCChhhhccC-CCC
Q 004877 239 EFLHSLGLARYEEAF-VREEI-DWDTLQWLTEEDLIGI-GVT 277 (725)
Q Consensus 239 ~wL~~lgL~~Y~~~F-~~~~i-d~~~l~~Lt~~DL~~l-GI~ 277 (725)
..++.++|+--.-.+ .+.+| ....|+..+++||..+ |+.
T Consensus 9 ~~Ie~L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G 50 (73)
T 1z3e_B 9 MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLG 50 (73)
T ss_dssp CBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCC
T ss_pred CcHHHhCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCC
Confidence 345778887766666 88999 9999999999999776 444
No 142
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=21.21 E-value=1.5e+02 Score=24.97 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=36.2
Q ss_pred CChhh-HHHHhhcCC-CHHHHhcCChhhhccC-CCCCCChhHHHHHHHHHHHHhhcc
Q 004877 245 GLARY-EEAFVREEI-DWDTLQWLTEEDLIGI-GVTALGPRKKILHTLCEIKKEYSR 298 (725)
Q Consensus 245 gL~~Y-~~~F~~~~i-d~~~l~~Lt~~DL~~l-GI~~~G~RkkIl~aI~~l~~~~~~ 298 (725)
||++| ++.|.+++| +.+.|+.+++++|.++ |+. .+.+....+.+-.+..+
T Consensus 11 ~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls----~~~v~~l~r~l~~~~s~ 63 (83)
T 2kz3_A 11 GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS----YKALVALRRVLLAQFSA 63 (83)
T ss_dssp TCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCC----HHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCC----HHHHHHHHHHHHHHhCC
Confidence 55554 677899999 9999999999999987 888 44444444555444443
No 143
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=21.12 E-value=81 Score=28.25 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=44.5
Q ss_pred HHHHHCCCh-hhHHHHhhcCC-CHHHHhcCChhhhccC-CCCCCChhHHHHHHHHHH
Q 004877 239 EFLHSLGLA-RYEEAFVREEI-DWDTLQWLTEEDLIGI-GVTALGPRKKILHTLCEI 292 (725)
Q Consensus 239 ~wL~~lgL~-~Y~~~F~~~~i-d~~~l~~Lt~~DL~~l-GI~~~G~RkkIl~aI~~l 292 (725)
+-|..+|++ .....+.++|| +.+.+...+..+|..+ ||. ..--.||+.+.+++
T Consensus 26 ~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIs-e~ka~kIi~aA~kl 81 (114)
T 1b22_A 26 SRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGIS-EAKADKILAEAAKL 81 (114)
T ss_dssp HHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCS-TTHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCC-HHHHHHHHHHHHHH
Confidence 446666865 88999999999 9999999999999976 888 77777888888776
No 144
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=20.38 E-value=1.2e+02 Score=31.70 Aligned_cols=93 Identities=10% Similarity=0.171 Sum_probs=51.8
Q ss_pred cCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCCCC-C---CHHHHHHHHHHHHHHhhc
Q 004877 484 HCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDF-P---KQEAVIQFVIEAIQAESF 559 (725)
Q Consensus 484 H~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~~~-p---~~~e~~~~l~e~I~~~~~ 559 (725)
++||--...|+.-.|-.+++-+|++..... .++|+++.|..-... +.+ . +....+..+.+... ..+
T Consensus 175 ~~p~k~v~wi~Pi~GAt~~~~lDfg~p~~~--------~k~DvV~SDMApn~s-Gh~yqQC~DHarii~Lal~fA~-~vL 244 (320)
T 2hwk_A 175 SVPGKMVDWLSDRPEATFRARLDLGIPGDV--------PKYDIIFVNVRTPYK-YHHYQQCEDHAIKLSMLTKKAC-LHL 244 (320)
T ss_dssp CCTTSEEEEEESSTTCSEECCGGGCSCTTS--------CCEEEEEEECCCCCC-SCHHHHHHHHHHHHHHTHHHHG-GGE
T ss_pred ccCCceeEeeccCCCceeecccccCCcccc--------CcCCEEEEcCCCCCC-CccccccchHHHHHHHHHHHHH-Hhc
Confidence 345544444443345456677888864332 469999999862211 111 1 11122222222222 467
Q ss_pred CCCcEEEEeccccc--HH-HHHHHHHHHcC
Q 004877 560 NPKTLFLIGSYTIG--KE-RLFLEVARVLR 586 (725)
Q Consensus 560 ~~~~~vlIp~~slG--re-qll~eLa~~l~ 586 (725)
+++|.+++=+|.-| .+ +++..|++.|.
T Consensus 245 kPGGtfV~KvyggaDr~se~lv~~LaR~F~ 274 (320)
T 2hwk_A 245 NPGGTCVSIGYGYADRASESIIGAIARQFK 274 (320)
T ss_dssp EEEEEEEEEECCCCSHHHHHHHHHHHTTEE
T ss_pred CCCceEEEEEecCCcccHHHHHHHHHHhcc
Confidence 89999999999877 33 45556666553
Done!