BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004878
(725 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 270/630 (42%), Positives = 371/630 (58%), Gaps = 69/630 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI KA +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGIAA-KALQA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 53 L-GLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G N A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSSAA 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 153 GTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQ 265
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFID +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 266 AGNIILFID-----------------AAIDASNILKPSLARGELQCIGATTLDEYRKYIE 308
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYISDR
Sbjct: 309 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + F + PP+ E + + E + +
Sbjct: 369 FLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQSQ 417
Query: 561 YDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I
Sbjct: 418 EFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQT 477
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 478 ETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 537
Query: 676 AKSLAACYFGSESSMLRLDMSEYMERHTVS 705
A++LA FG E SM+R+DMSEYME+H+ S
Sbjct: 538 ARALAESIFGDEESMIRIDMSEYMEKHSTS 567
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust.
Identities = 241/505 (47%), Positives = 324/505 (64%), Gaps = 63/505 (12%)
Query: 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEG 330
+ALEQ+ +DLT A+E +DPVIGR+ EI+R+IQIL RRTKNNP+L+GE GVGKTAI EG
Sbjct: 151 NALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210
Query: 331 LAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE-IQKSGDVILFID 389
LA RIV+ +VP L KRI+SL MG L+AGAK RGE E R+ +I E +Q G+VILFID
Sbjct: 211 LAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 270
Query: 390 EVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARR 448
E+HT++G+G K G +D N+LKP+L RGEL+ I +TT DE+R + EKD AL RR
Sbjct: 271 ELHTVVGAG------KAEGAVDAGNMLKPALARGELRLIGATTLDEYR-EIEKDPALERR 323
Query: 449 FQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508
FQPV + EP+ E+ + IL GL+EKYE HH + + AI AA LS RYI++R LPDKAID
Sbjct: 324 FQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383
Query: 509 LVDEAGSR---------AHIELFKRKK-----EQQTCILSKPPDDY-------------- 540
L+DEA +R I+ +RKK E++ K PD
Sbjct: 384 LIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLT 443
Query: 541 ---------WQEIRTV-----QAMHEV------VQGSRLKYDDVVASMGDTSEI-VVESS 579
W+ R + +A H + ++ + +YD A+ E+ +E+
Sbjct: 444 EEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAE 503
Query: 580 LPSASDDDEPA-----VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQ 634
+ + S+ A V +DIA + S W+GIPV ++ ER L+ LEE+L KRV+GQ
Sbjct: 504 VEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQ 563
Query: 635 DEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694
DEA+ A++ A++R+R GLKDPNRP + LF GPTGVGKTELAK+LAA F +E +M+R+D
Sbjct: 564 DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623
Query: 695 MSEYMERHTVSKLIGSPPGYVGVGE 719
M+EYME+H VS+LIG+PPGYVG E
Sbjct: 624 MTEYMEKHAVSRLIGAPPGYVGYEE 648
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 337 bits (863), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 213/531 (40%), Positives = 297/531 (55%), Gaps = 69/531 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI KA +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGIAA-KALQA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 53 L-GLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G N A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSSAA 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 153 GTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQ 265
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFID +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 266 AGNIILFID-----------------AAIDASNILKPSLARGELQCIGATTLDEYRKYIE 308
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYISDR
Sbjct: 309 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + F + PP+ E + + E + +
Sbjct: 369 FLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQSQ 417
Query: 561 YDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSG 606
+ AS+ DT + + VE + S + E + V DDIA V S W+G
Sbjct: 418 EFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTG 468
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 281 bits (719), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/284 (53%), Positives = 197/284 (69%), Gaps = 23/284 (8%)
Query: 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEG 330
+ALEQ+ +DLT A+E +DPVIGR+ EI+R+IQIL RRTKNNP+L+GE GVGKTAI EG
Sbjct: 14 NALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 73
Query: 331 LAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE-IQKSGDVILFID 389
LA RIV+ +VP L KRI+SL MG L+AGAK RGE E R+ +I E +Q G+VILFID
Sbjct: 74 LAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 133
Query: 390 EVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARR 448
E+HT++G+G K G +D N+LKP+L RGEL+ I +TT DE+R + EKD AL RR
Sbjct: 134 ELHTVVGAG------KAEGAVDAGNMLKPALARGELRLIGATTLDEYR-EIEKDPALERR 186
Query: 449 FQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508
FQPV + EP+ E+ + IL GL+EKYE HH + + AI AA LS RYI++R LPDKAID
Sbjct: 187 FQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 246
Query: 509 LVDEAGSR---------AHIELFKRKK-----EQQTCILSKPPD 538
L+DEA +R I+ +RKK E++ K PD
Sbjct: 247 LIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPD 290
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/360 (42%), Positives = 227/360 (63%), Gaps = 26/360 (7%)
Query: 172 SISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVS 231
++S +RV + AV + +S G N + ++ + +F+ + A +L++ +V+ L V
Sbjct: 81 TLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKH--EVSRLDVVNF- 137
Query: 232 RLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASA----LEQFCVDLTARASEE 287
++ G R++ + + P + LE F +L A
Sbjct: 138 --------------ISHGTRKDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQLARVG 183
Query: 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK 347
IDP+IGRE E++R IQ+LCRR KNNP+L+GESGVGKTAIAEGLA RIVQ +VP +
Sbjct: 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADC 243
Query: 348 RIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT 407
I SLD+G L+AG K RG+ E R L+ ++++ + ILFIDE+HT+IG+G G
Sbjct: 244 TIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--- 300
Query: 408 GLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467
+D +NL+KP L G+++ I STT E FEKD+ALARRFQ + I+EPS E+ V+I+
Sbjct: 301 -VDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 359
Query: 468 GLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI-ELFKRKK 526
GL+ KYEAHH+ ++T +A+ AAV L+ +YI+DR+LPDKAID++DEAG+RA + + KRKK
Sbjct: 360 GLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKK 419
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 82/121 (67%), Gaps = 3/121 (2%)
Query: 596 DIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDP 655
DI +V + + IP + ++ +R L L ++LK V GQD+A+ A++ A+K +R GL
Sbjct: 425 DIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHE 484
Query: 656 NRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYV 715
++P + LF GPTGVGKTE+ L+ G E +LR DMSEYMERHTVS+LIG+PPGYV
Sbjct: 485 HKPVGSFLFAGPTGVGKTEVTVQLSKA-LGIE--LLRFDMSEYMERHTVSRLIGAPPGYV 541
Query: 716 G 716
G
Sbjct: 542 G 542
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 141/188 (75%), Gaps = 5/188 (2%)
Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
ALE++ DLTA A +DPVIGR+TEI+R IQIL RRTKNNPILLG+ GVGKTAI EGL
Sbjct: 4 ALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGL 63
Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDE 390
AI+IVQ +VP L ++++SLD+ L+AGAK RG+ E R+ +++ E+Q + G V++FIDE
Sbjct: 64 AIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDE 123
Query: 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450
+HT++G+G V G LD N+LKP L RGEL+CI +TT E+R EKDKAL RRFQ
Sbjct: 124 IHTVVGAGAVAEG----ALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQ 179
Query: 451 PVLISEPS 458
+L+ +PS
Sbjct: 180 QILVEQPS 187
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 213 bits (542), Expect = 3e-55, Method: Composition-based stats.
Identities = 109/197 (55%), Positives = 146/197 (74%), Gaps = 8/197 (4%)
Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
AL+++ +DLT RA + +DPVIGR+ EI+R IQ+L RRTKNNP+L+GE GVGKTAI EGL
Sbjct: 4 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 63
Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDE 390
A RI+ EVP L +R+++LDMG L+AGAK RGE E R+ +++++ K G+VILFIDE
Sbjct: 64 AQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE 123
Query: 391 VHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF 449
+HT++G+G K G +D N+LKP+L RGEL C+ +TT DE+R EKD AL RRF
Sbjct: 124 LHTMVGAG------KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRF 177
Query: 450 QPVLISEPSQEDAVRIL 466
Q V ++EPS ED + IL
Sbjct: 178 QKVFVAEPSVEDTIAIL 194
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 77/91 (84%)
Query: 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES 688
KRV+GQDEA+ A++ A++R+R GLKDPNRP + LF GPTGVGKTELAK+LAA F +E
Sbjct: 14 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 73
Query: 689 SMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
+M+R+DM+EYME+H VS+LIG+PPGYVG E
Sbjct: 74 AMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE 104
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 74/91 (81%)
Query: 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES 688
KRV+GQDEA+ A++ A++R+R GLKDPNRP + LF GPTGVGKTELAK+LAA F +E
Sbjct: 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 76
Query: 689 SMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
+ +R+D +EY E+H VS+LIG+PPGYVG E
Sbjct: 77 AXIRIDXTEYXEKHAVSRLIGAPPGYVGYEE 107
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent
Protease (Heat Shock Protein) From Corynebacterium
Glutamicum
Length = 146
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 15/159 (9%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDK 136
++FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI++D
Sbjct: 1 QAMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDA 60
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
R Q+ ++ QG + +PF+ K+V E ++ G+ +I
Sbjct: 61 VR------------QEVEEIIGQGSQ-PTTGHIPFTPRAKKVLELSLREGLQMGHKYIGT 107
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG 235
E + LGL +G A +VL +LG D+ + + L G
Sbjct: 108 EFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSG 146
>pdb|2Y1R|A Chain A, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|B Chain B, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|C Chain C, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|D Chain D, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|E Chain E, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|F Chain F, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|G Chain G, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|H Chain H, Structure Of Meca121 & Clpc N-Domain Complex
Length = 149
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI KA +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGIA-AKALQA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 53 L-GLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVN 223
LGL +G A RVL LGV +N
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLN 132
>pdb|2K77|A Chain A, Nmr Solution Structure Of The Bacillus Subtilis Clpc N-
Domain
Length = 146
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI KA +A
Sbjct: 3 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGIA-AKALQA 53
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 54 L-GLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVN 223
LGL +G A RVL LGV +N
Sbjct: 111 LGLIREGEGVAARVLNNLGVSLN 133
>pdb|2Y1Q|A Chain A, Crystal Structure Of Clpc N-Terminal Domain
Length = 150
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 12/143 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ + + + G+ + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LQALGLGSEKIQKEVESLIGRAQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVN 223
LGL +G A RVL LGV +N
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLN 132
>pdb|3FES|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
Length = 145
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F RFT+RA KA+ + AKSLG ++V ++H+LLGL+ E E GI A + +
Sbjct: 5 FNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLRE--------EEGI----AAKVL 52
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ + + +GK + + S +K++ E + ++ N+I EHI L
Sbjct: 53 SKVGFTEAYLEGKIVDXEGKGEEISEDIVLSPRSKQILELSGXFANKLKTNYIGTEHILL 112
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAV 230
+ +G A ++L GV+ LA + +
Sbjct: 113 AIIQEGEGIANKILNYAGVNDRTLAQLTI 141
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 626 QLKKRVIGQDEAVAAISRAVKRS--RVGLKDPNRPTAA---MLFCGPTGVGKTELAKSLA 680
+L + +IGQ +A A++ A++ R+ L++P R +L GPTGVGKTE+A+ LA
Sbjct: 12 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 71
Query: 681 ACYFGSESSMLRLDMSEYMERHTVSKLIGS 710
+ + ++++ +++ E V K + S
Sbjct: 72 KL---ANAPFIKVEATKFTEVGYVGKEVDS 98
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 626 QLKKRVIGQDEAVAAISRAVKRS--RVGLKDPNRPTAA---MLFCGPTGVGKTELAKSLA 680
+L + +IGQ +A A++ A++ R+ L++P R +L GPTGVGKTE+A+ LA
Sbjct: 12 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 71
Query: 681 ACYFGSESSMLRLDMSEYMERHTVSKLIGS 710
+ + ++++ +++ E V K + S
Sbjct: 72 KL---ANAPFIKVEATKFTEVGYVGKEVDS 98
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 626 QLKKRVIGQDEAVAAISRAVKRS--RVGLKDPNRPTAA---MLFCGPTGVGKTELAKSLA 680
+L + +IGQ +A A++ A++ R L++P R +L GPTGVGKTE+A+ LA
Sbjct: 12 ELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLA 71
Query: 681 ACYFGSESSMLRLDMSEYMERHTVSKLIGS 710
+ + ++++ +++ E V K + S
Sbjct: 72 KL---ANAPFIKVEATKFTEVGYVGKEVDS 98
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 626 QLKKRVIGQDEAVAAISRAVKRS--RVGLKDPNRPTAA---MLFCGPTGVGKTELAKSLA 680
+L K +IGQD A +++ A++ R+ L + R +L GPTGVGKTE+A+ LA
Sbjct: 11 ELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLA 70
Query: 681 ACYFGSESSMLRLDMSEYMERHTVSKLIGS 710
+ + ++++ +++ E V K + S
Sbjct: 71 KL---ANAPFIKVEATKFTEVGYVGKEVDS 97
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 626 QLKKRVIGQDEAVAAISRAVKRS--RVGLKDPNRPTAA---MLFCGPTGVGKTELAKSLA 680
+L K +IGQD A +++ A++ R+ L + R +L GPTGVGKTE+A+ LA
Sbjct: 18 ELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLA 77
Query: 681 ACYFGSESSMLRLDMSEYMERHTVSKLIGS 710
+ + ++++ +++ E V K + S
Sbjct: 78 KL---ANAPFIKVEATKFTEVGYVGKEVDS 104
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 626 QLKKRVIGQDEAVAAISRAVKRS--RVGLKDPNRPTAA---MLFCGPTGVGKTELAKSLA 680
+L K +IGQD A +++ A++ R+ L + R +L GPTGVGKTE+A+ LA
Sbjct: 12 ELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLA 71
Query: 681 ACYFGSESSMLRLDMSEYMERHTVSKLIGS 710
+ + ++++ +++ E V K + S
Sbjct: 72 KL---ANAPFIKVEATKFTEVGYVGKEVDS 98
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 31/152 (20%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
IL G G GKT +AE +A R A+V +RI + + +G KE E R
Sbjct: 54 ILWGPPGTGKTTLAEVIA-RYANADV------ERISA-----VTSGVKEIREAIERARQN 101
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ +++ ILF+DEVH R NK + P + G + I +TT++
Sbjct: 102 RNAGRRT---ILFVDEVH---------RFNKSQ----QDAFLPHIEDGTITFIGATTEN- 144
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466
FE + AL R + L+ S ED ++L
Sbjct: 145 --PSFELNSALLSRARVYLLKSLSTEDIEQVL 174
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
V+GQDE + + V+R + P+ +LF GP G GKT A +LA FG
Sbjct: 19 VVGQDEVIQRLKGYVERKNI----PH-----LLFSGPPGTGKTATAIALARDLFG 64
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM 690
V+GQDE + + V+R + P+ +LF GP G GKT A +LA FG
Sbjct: 19 VVGQDEVIQRLKGYVERKNI----PH-----LLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 691 LRLDMSEYMER 701
++M+ ER
Sbjct: 70 NFIEMNASDER 80
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 652 LKDPNRPTAAMLFCGPTGVGKTELAKSLA----ACYFGSESSMLRLDMSEYM 699
K +PT+ +L GP G GK+ LAK++A + +F SS L +S++M
Sbjct: 77 FKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL---VSKWM 125
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
R+ + +L G G GK+ +A+ +A +A F +S + +K GE
Sbjct: 81 RKPTSGILLYGPPGTGKSYLAKAVA---TEANSTFFSVSSSDLV---------SKWMGES 128
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403
E V L + +++ I+FID+V L +GT G G
Sbjct: 129 EKLVKQLFAMARENKPSIIFIDQVDAL--TGTRGEG 162
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 21/71 (29%)
Query: 648 SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC----------------YFGSESSML 691
RVG+K P +L GP G GKT LAK++AA Y G + ++
Sbjct: 208 QRVGIK----PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARII 263
Query: 692 RLDMSEYMERH 702
R +M Y + H
Sbjct: 264 R-EMFAYAKEH 273
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 652 LKDPNRPTAAMLFCGPTGVGKTELAKSLA----ACYFGSESSMLRLDMSEYM 699
K +PT+ +L GP G GK+ LAK++A + +F SS L +S++M
Sbjct: 62 FKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL---VSKWM 110
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
R+ + +L G G GK+ +A+ +A +A F +S + +K GE
Sbjct: 66 RKPTSGILLYGPPGTGKSYLAKAVA---TEANSTFFSVSSSDLV---------SKWMGES 113
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403
E V L + +++ I+FID+V L +GT G G
Sbjct: 114 EKLVKQLFAMARENKPSIIFIDQVDAL--TGTRGEG 147
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 652 LKDPNRPTAAMLFCGPTGVGKTELAKSLA----ACYFGSESSMLRLDMSEYM 699
K +PT+ +L GP G GK+ LAK++A + +F SS L +S++M
Sbjct: 44 FKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL---VSKWM 92
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
R+ + +L G G GK+ +A+ +A +A F +S + +K GE
Sbjct: 48 RKPTSGILLYGPPGTGKSYLAKAVA---TEANSTFFSVSSSDLV---------SKWMGES 95
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403
E V L + +++ I+FID+V L +GT G G
Sbjct: 96 EKLVKQLFAMARENKPSIIFIDQVDAL--TGTRGEG 129
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 652 LKDPNRPTAAMLFCGPTGVGKTELAKSLA----ACYFGSESSMLRLDMSEYM 699
K +PT+ +L GP G GK+ LAK++A + +F SS L +S++M
Sbjct: 53 FKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL---VSKWM 101
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
R+ + +L G G GK+ +A+ +A +A F +S + +K GE
Sbjct: 57 RKPTSGILLYGPPGTGKSYLAKAVA---TEANSTFFSVSSSDLV---------SKWMGES 104
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403
E V L + +++ I+FIDEV L +GT G G
Sbjct: 105 EKLVKQLFAMARENKPSIIFIDEVDAL--TGTRGEG 138
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 21/96 (21%)
Query: 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA 359
+R +Q L + +LLG G GKT +A+ +A +A+VP L MA
Sbjct: 29 ERFLQ-LGAKVPKGALLLGPPGCGKTLLAKAVA---TEAQVPF-------------LAMA 71
Query: 360 GAKE----RGELEARVTTLISEIQKSGDVILFIDEV 391
GA+ G ARV +L E + I++IDE+
Sbjct: 72 GAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEI 107
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--- 687
V QD AV + + LK N P MLF GP G GKT +L +G +
Sbjct: 39 VTAQDHAVTVLKKT-------LKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMK 89
Query: 688 SSMLRLDMSE 697
S +L L+ S+
Sbjct: 90 SRILELNASD 99
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 30/122 (24%)
Query: 298 EIQRIIQILCRRTKNNPI---------LLGESGVGKTAIAEGLAIRIVQAEVPVFLLS-K 347
E++ +++ L +K N I L+G G GKT +A +A +A VP F +S
Sbjct: 27 ELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVA---GEANVPFFHISGS 83
Query: 348 RIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT 407
+ L +G+ GA ARV L ++ + I+FIDE+ VGR ++G
Sbjct: 84 DFVELFVGV---GA-------ARVRDLFAQAKAHAPCIVFIDEID------AVGR-HRGA 126
Query: 408 GL 409
GL
Sbjct: 127 GL 128
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 629 KRVIGQDEAVAAISRAVKRSRVGLKDP---NRPTAAM----LFCGPTGVGKTELAKSLAA 681
K V G +EA+ + V+ LKDP NR A M L GP G GKT LA+++A
Sbjct: 16 KDVGGAEEAIEELKEVVEF----LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
>pdb|3UY7|A Chain A, Designed Protein Ke59 R1 710H WITH G130S MUTATION
pdb|3UY7|B Chain B, Designed Protein Ke59 R1 710H WITH G130S MUTATION
Length = 252
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 69 ARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDM--------VFTQHLLLGLI-- 118
A ++R II + F +R + A+I + G D+ F + +GL+
Sbjct: 24 ASRQRPIISLRERILEFNKRNITAIIAVYKRKSPSGLDVERDPIEYAKFMERYAVGLVIL 83
Query: 119 AEDRHPNGFLESGITIDKAREAVVSIW-HSTNNQDTDDAAAQGKPFSSAAKMPFSISTKR 177
E+++ NG E I + + +W DDA G + + I T+R
Sbjct: 84 TEEKYFNGSYEDLRKIASSVSIPILMWDFIVKESQIDDAYNLG---ADTVSLIVKILTER 140
Query: 178 VFEAAVEYSRSRG 190
E+ +EY+RS G
Sbjct: 141 ELESLLEYARSYG 153
>pdb|3NYZ|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NYZ|B Chain B, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NZ1|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
Complexed With Transition State Analog 5-Nitro
Benzotriazole
Length = 261
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 69 ARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDM--------VFTQHLLLGLI-- 118
A ++R II ++ F +R + A+I + + G D+ F + +GL
Sbjct: 24 ASRQRPIISLNERILEFNKRNITAIIAAYKRKSPSGLDVERDPIEYSKFMERYAVGLAIA 83
Query: 119 AEDRHPNGFLESGITIDKAREAVVSIW-HSTNNQDTDDAAAQGKPFSSAAKMPFSISTKR 177
E+++ NG E+ I + + +W DDA G + + I T+R
Sbjct: 84 TEEKYFNGSYETLRKIASSVSIPILMWDFIVKESQIDDAYNLG---ADTVALIVKILTER 140
Query: 178 VFEAAVEYSRSRG 190
E+ +EY+RS G
Sbjct: 141 ELESLLEYARSYG 153
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 303 IQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362
Q L + +++G G GKT +A+ +A +A+VP F +S D + G
Sbjct: 37 FQKLGGKIPKGVLMVGPPGTGKTLLAKAIA---GEAKVPFFTIS----GSDFVEMFVGVG 89
Query: 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409
+RV + + +K+ I+FIDE+ VGR +G GL
Sbjct: 90 A-----SRVRDMFEQAKKAAPCIIFIDEID------AVGR-QRGAGL 124
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM 690
V GQ+E + + + V ++ +LF GP G GKT +LA +G S
Sbjct: 27 VYGQNEVITTVRKFVDEGKL---------PHLLFYGPPGTGKTSTIVALAREIYGKNYSN 77
Query: 691 LRLDMSEYMER 701
+ L+++ +R
Sbjct: 78 MVLELNASDDR 88
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
++GQ+ V + VK + P+ +LF GP GVGKT A +LA FG
Sbjct: 27 IVGQEHIVKRLKHYVKTGSM----PH-----LLFAGPPGVGKTTAALALARELFG 72
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 21/159 (13%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS-KRIMSLDMGLLMAGAKERGELEARVTT 373
+L+G G GKT +A+ +A +A VP F + + + +GL GA +RV
Sbjct: 48 LLVGPPGTGKTLLAKAVA---GEAHVPFFSMGGSSFIEMFVGL---GA-------SRVRD 94
Query: 374 LISEIQKSGDVILFIDEVHTLIGS---GTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
L +K I+FIDE+ + S G V GN ++ LL G G
Sbjct: 95 LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV 154
Query: 431 TQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRIL 466
+R + D AL R RF + VL+ +P V IL
Sbjct: 155 LAATNRPEI-LDPALMRPGRFDRQVLVDKPDFNGRVEIL 192
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702
P +L GP G GKT L K++A ++++ +R++ SE++ ++
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVANS---TKAAFIRVNGSEFVHKY 246
>pdb|3UXA|A Chain A, Designed Protein Ke59 R1 710H
pdb|3UXA|B Chain B, Designed Protein Ke59 R1 710H
pdb|3UXD|A Chain A, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
pdb|3UXD|B Chain B, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
Length = 252
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 69 ARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDM--------VFTQHLLLGLI-- 118
A ++R II + F +R + A+I + G D+ F + +GL+
Sbjct: 24 ASRQRPIISLRERILEFNKRNITAIIAVYKRKSPSGLDVERDPIEYAKFMERYAVGLVIL 83
Query: 119 AEDRHPNGFLESGITIDKAREAVVSIW-HSTNNQDTDDAAAQGKPFSSAAKMPFSISTKR 177
E+++ NG E I + + +W DDA G + + I T+R
Sbjct: 84 TEEKYFNGSYEDLRKIASSVSIPILMWDFIVKESQIDDAYNLG---ADTVGLIVKILTER 140
Query: 178 VFEAAVEYSRSRG 190
E+ +EY+RS G
Sbjct: 141 ELESLLEYARSYG 153
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 623 LEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA------MLFCGPTGVGKTELA 676
+ L VIGQ++A ++ AV L++ + +L GPTG GKT LA
Sbjct: 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68
Query: 677 KSLA 680
++LA
Sbjct: 69 ETLA 72
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 623 LEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA------MLFCGPTGVGKTELA 676
+ L VIGQ++A ++ AV L++ + +L GPTG GKT LA
Sbjct: 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68
Query: 677 KSLA 680
++LA
Sbjct: 69 ETLA 72
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 658 PTAAMLFCGPTGVGKTELAKSLA 680
P+ +LF GP G GKT LAK++A
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIA 532
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLL---SKRIMSLDMGLLMAGAKERGELEARV 371
+L G G GKT IA R V E F IMS K GE E+ +
Sbjct: 242 LLYGPPGTGKTLIA-----RAVANETGAFFFLINGPEIMS----------KLAGESESNL 286
Query: 372 TTLISEIQKSGDVILFIDEVHTL 394
E +K+ I+FIDE+ +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAI 309
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 658 PTAAMLFCGPTGVGKTELAKSLA 680
P+ +LF GP G GKT LAK++A
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIA 532
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLL---SKRIMSLDMGLLMAGAKERGELEARV 371
+L G G GKT IA R V E F IMS K GE E+ +
Sbjct: 242 LLYGPPGTGKTLIA-----RAVANETGAFFFLINGPEIMS----------KLAGESESNL 286
Query: 372 TTLISEIQKSGDVILFIDEVHTL 394
E +K+ I+FIDE+ +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAI 309
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L G G GK+ +A+ +A +A F I S D+ +K GE E V L
Sbjct: 171 LLFGPPGTGKSYLAKAVA---TEANNSTFF---SISSSDLV-----SKWLGESEKLVKNL 219
Query: 375 ISEIQKSGDVILFIDEVHTLIGS 397
+++ I+FIDE+ +L GS
Sbjct: 220 FQLARENKPSIIFIDEIDSLCGS 242
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 658 PTAAMLFCGPTGVGKTELAKSLA 680
P+ +LF GP G GKT LAK++A
Sbjct: 48 PSKGVLFYGPPGCGKTLLAKAIA 70
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 622 GLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAA 681
GL++Q+++ V + V + RA K +G++ P L GP G GKT LA+ A
Sbjct: 185 GLDKQIEELV---EAIVLPMKRADKFKDMGIRAPK----GALMYGPPGTGKTLLAR---A 234
Query: 682 CYFGSESSMLRL 693
C + ++ L+L
Sbjct: 235 CAAQTNATFLKL 246
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L G G GK+ +A+ +A +A F I S D+ +K GE E V L
Sbjct: 49 LLFGPPGTGKSYLAKAVA---TEANNSTFF---SISSSDLV-----SKWLGESEKLVKNL 97
Query: 375 ISEIQKSGDVILFIDEVHTLIGS 397
+++ I+FIDE+ +L GS
Sbjct: 98 FQLARENKPSIIFIDEIDSLCGS 120
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
R +L+G GVGKT +A +A +A VP F+ + ++M + GA
Sbjct: 62 RIPKGVLLVGPPGVGKTHLARAVA---GEARVP-FITASGSDFVEM-FVGVGA------- 109
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTL---IGSGTVGRGNKGTGLDISNLL 415
ARV L ++ I+FIDE+ + GSG VG GN ++ LL
Sbjct: 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLL 158
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 275 QFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLA 332
+F E+LID VIG+E ++ +I+ + K + +L+GE G GK+ + + +A
Sbjct: 26 EFTTTEEIEVPEKLIDQVIGQEHAVE-VIKTAANQ-KRHVLLIGEPGTGKSMLGQAMA 81
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
R +L+G GVGKT +A +A +A VP F+ + ++M + GA
Sbjct: 71 RIPKGVLLVGPPGVGKTHLARAVA---GEARVP-FITASGSDFVEM-FVGVGA------- 118
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTL---IGSGTVGRGNKGTGLDISNLL 415
ARV L ++ I+FIDE+ + GSG VG GN ++ LL
Sbjct: 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLL 167
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
V+GQ+ + A++ + R+ A LF G GVGKT +A+ LA
Sbjct: 25 VVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLA 66
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
V+GQ+ + A++ + R+ A LF G GVGKT +A+ LA
Sbjct: 40 VVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLA 81
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
V+GQ+ + A++ + R+ A LF G GVGKT +A+ LA
Sbjct: 40 VVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLA 81
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
V+GQ+ + A++ + R+ A LF G GVGKT +A+ LA
Sbjct: 21 VVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLA 62
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
V+GQ+ + A++ + R+ A LF G GVGKT +A+ LA
Sbjct: 18 VVGQEHVLTALANGLSLGRIH--------HAYLFSGTRGVGKTSIARLLA 59
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
V+GQ+ + A++ + R+ A LF G GVGKT +A+ LA
Sbjct: 18 VVGQEHVLTALANGLSLGRIH--------HAYLFSGTRGVGKTSIARLLA 59
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
R +L+G GVGKT +A +A +A VP F+ + ++M + GA
Sbjct: 71 RIPKGVLLVGPPGVGKTHLARAVA---GEARVP-FITASGSDFVEM-FVGVGA------- 118
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTL---IGSGTVGRGN 404
ARV L ++ I+FIDE+ + GSG VG GN
Sbjct: 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGN 156
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 18/74 (24%)
Query: 650 VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709
GL+ P R +L GP G GKT LAK++AA S ++ + + +
Sbjct: 142 TGLRAPAR---GLLLFGPPGNGKTMLAKAVAA---ESNATFFNISAASLTSK-------- 187
Query: 710 SPPGYVGVGEYLSR 723
YVG GE L R
Sbjct: 188 ----YVGEGEKLVR 197
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L G G GKT +A+ +A ++ F +S ++ +K GE E V L
Sbjct: 152 LLFGPPGNGKTMLAKAVA---AESNATFFNISAASLT---------SKYVGEGEKLVRAL 199
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK----PSLGRGELQCIAST 430
+ ++ I+FID+V +L+ G + L L++ S G + + +T
Sbjct: 200 FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259
Query: 431 TQDEHRTQFEKDKALARRF-QPVLISEPSQE 460
+ + E D+A+ RRF + V +S P++E
Sbjct: 260 NRPQ-----ELDEAVLRRFIKRVYVSLPNEE 285
>pdb|3UZ5|A Chain A, Designed Protein Ke59 R13 311H
pdb|3UZ5|B Chain B, Designed Protein Ke59 R13 311H
pdb|3UZJ|A Chain A, Designed Protein Ke59 R13 311H WITH BENZOTRIAZOLE
pdb|3UZJ|B Chain B, Designed Protein Ke59 R13 311H WITH BENZOTRIAZOLE
Length = 252
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 67 ICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDM--------VFTQHLLLGL- 117
+ A ++R II + F +R + A++ + G D+ F + ++GL
Sbjct: 22 VRASRQRPIISLKERILEFNKRNITAIMAVYKRKSPSGLDVERDPIEYAKFMERGVVGLA 81
Query: 118 -IAEDRHPNGFLESGITIDKAREAVVSIWHS-TNNQDTDDAAAQGKPFSSAAKMPFSIST 175
+ E+++ NG E I + + +W DDA G + + I T
Sbjct: 82 ILTEEKYFNGSYEDLRKIASSVSVPILMWDIIVKESQIDDAYNLG---ADTVGLIVKILT 138
Query: 176 KRVFEAAVEYSRSRG 190
+R E+ +EY+RS G
Sbjct: 139 ERELESLLEYARSLG 153
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 30/122 (24%)
Query: 298 EIQRIIQILCRRTKNNPI---------LLGESGVGKTAIAEGLAIRIVQAEVPVFLLS-K 347
E++ +++ L +K N I L+G G G T +A +A +A VP F +S
Sbjct: 27 ELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVA---GEANVPFFHISGS 83
Query: 348 RIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT 407
+ L +G+ GA ARV L ++ + I+FIDE+ VGR ++G
Sbjct: 84 DFVELFVGV---GA-------ARVRDLFAQAKAHAPCIVFIDEID------AVGR-HRGA 126
Query: 408 GL 409
GL
Sbjct: 127 GL 128
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
R +L+G GVGKT +A +A +A VP F+ + ++M + GA
Sbjct: 47 RIPKGVLLVGPPGVGKTHLARAVA---GEARVP-FITASGSDFVEM-FVGVGA------- 94
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTL---IGSGTVGRGN 404
ARV L ++ I+FIDE+ + GSG VG GN
Sbjct: 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGN 132
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
pdb|3D3L|B Chain B, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
Length = 541
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR----YISDRYLPDKAID 508
L++E +R L GL H KF + I + ++ R ISD + DKA+
Sbjct: 212 LVAEVIAVATMRCLPGL------HPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVS 265
Query: 509 LVDEAGSRAHIELFKRKKEQQTCILSKPPDD 539
G H++L +R Q T PPDD
Sbjct: 266 ----TGGGGHVQLLRRAAAQLTYCSLCPPDD 292
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 644 AVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
AV++ LK P + GP GVGKT LAKS+A
Sbjct: 98 AVQKLTKSLKGP-----ILCLAGPPGVGKTSLAKSIA 129
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPG 713
A +L G +G GK +A++L AC S+ ++ L+ + E S+L G G
Sbjct: 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKG 79
>pdb|3TC6|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or63
Length = 258
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 67 ICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDM--------VFTQHLLLGL- 117
+ A ++R II ++ F +R + A+I + G D+ F + +GL
Sbjct: 22 VRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYAKFMERYAVGLK 81
Query: 118 -IAEDRHPNGFLESGITIDKAREAVVSIWHS-TNNQDTDDAAAQGKPFSSAAKMPFSIST 175
+ E+++ NG E+ I + +++ + DDA G + + I T
Sbjct: 82 ILTEEKYFNGSYETLRKIASSVSIPIAMSDAIVKESQIDDAYNLG---ADTVVLIVKILT 138
Query: 176 KRVFEAAVEYSRSRG 190
+R E+ +EY+RS G
Sbjct: 139 ERELESLLEYARSYG 153
>pdb|3UY8|A Chain A, Designed Protein Ke59 R5_115F
pdb|3UY8|B Chain B, Designed Protein Ke59 R5_115F
Length = 247
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 69 ARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDM--------VFTQHLLLGL--I 118
A ++R II + F +R A+I + G D+ F + +GL +
Sbjct: 23 ASRQRPIISLKERILEFNKRNNTAIIAVYKRKSPSGLDVERDPIEYAKFMERYAVGLAIL 82
Query: 119 AEDRHPNGFLESGITIDKAREAVVSIW-HSTNNQDTDDAAAQGKPFSSAAKMPFSISTKR 177
E+++ NG E I + + +W DDA G + + I T+R
Sbjct: 83 TEEKYFNGSYEDLRKIASSVSIPILMWDFIVKESQIDDAYNLG---ADTVGLIVKILTER 139
Query: 178 VFEAAVEYSRSRG 190
E+ +EY+RS G
Sbjct: 140 ELESLLEYARSYG 152
>pdb|3NXF|A Chain A, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
Length = 258
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 69 ARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDM--------VFTQHLLLGL--I 118
A ++R II ++ F +R + A+I + G D+ F + +GL
Sbjct: 24 ASRQRPIISLNERILEFNKRNITAIIATYMRKSPWGLDVERDPIEYAKFMERYAVGLSIC 83
Query: 119 AEDRHPNGFLESGITIDKAREAV-VSIWHS---TNNQDTDDAAAQGKPFSSAAKMPFSIS 174
E+++ NG E T+ K +V + I + DDA G + + I
Sbjct: 84 TEEKYANGSYE---TLRKIASSVSIPILMADFIVKESQIDDAYNLG---ADTVPLIVKIL 137
Query: 175 TKRVFEAAVEYSRSRG 190
T+R E+ +EY+RS G
Sbjct: 138 TERELESLLEYARSYG 153
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 622 GLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
GL +Q ++GQ+ A A V+ +K A+L GP G GKT LA ++A
Sbjct: 44 GLAKQAASGLVGQENAREACGVIVEL----IKSKKXAGRAVLLAGPPGTGKTALALAIA 98
>pdb|3TC7|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or62
Length = 258
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 67 ICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDM--------VFTQHLLLGLI 118
+ A ++R II ++ F +R + A+I + G D+ F + +GL
Sbjct: 22 VRASRQRPIISLNERILEFNKRNITAIIAEYKRKDPSGLDVERDPIEYAKFMERYAVGLF 81
Query: 119 --AEDRHPNGFLESGITIDKAREAVVSIW-HSTNNQDTDDAAAQGKPFSSAAKMPFSIST 175
E+++ NG E+ I + + ++ DDA G + + I T
Sbjct: 82 ISTEEKYFNGSYETLRKIASSVSIPILMYDFIVKESQIDDAYNLG---ADTVALIVKILT 138
Query: 176 KRVFEAAVEYSRSRG 190
+R E+ +EY+RS G
Sbjct: 139 ERELESLLEYARSYG 153
>pdb|3O6Y|X Chain X, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
pdb|3UD6|A Chain A, Structural Analyses Of Covalent Enzyme-Substrate Analogue
Complexes Reveal Strengths And Limitations Of De Novo
Enzyme Design
Length = 258
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 69 ARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDM--------VFTQHLLLGL--I 118
A ++R II ++ F +R + A+I + G D+ F + +GL
Sbjct: 24 ASRQRPIISLNERILEFNKRNITAIIATYMRKSPWGLDVERDPIEYAKFMERYAVGLSIC 83
Query: 119 AEDRHPNGFLESGITIDKAREAV-VSIWHS---TNNQDTDDAAAQGKPFSSAAKMPFSIS 174
E+++ NG E T+ K +V + I + DDA G + + I
Sbjct: 84 TEEKYANGSYE---TLRKIASSVSIPILMADFIVKESQIDDAYNLG---ADTVPLIVKIL 137
Query: 175 TKRVFEAAVEYSRSRG 190
T+R E+ +EY+RS G
Sbjct: 138 TERELESLLEYARSYG 153
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 622 GLEEQLKKRVIGQD---EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
GL +Q ++GQ+ EA I +K ++ + A+L GP G GKT LA +
Sbjct: 30 GLAKQAASGLVGQENAREACGVIVELIKSKKMAGR-------AVLLAGPPGTGKTALALA 82
Query: 679 LA 680
+A
Sbjct: 83 IA 84
>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
Length = 388
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
GD I I+EV T+ GT + T D +N KP R + C+A T D R
Sbjct: 314 GDEIYVINEVGTIYIDGTQLPTTRKTENDFNNSKKPK--RSGIYCVAKTENDWIR 366
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 295 RETEIQRIIQILCRRTK----NNPILLGESGVGKTAIAEGLAIRIVQA 338
RE E++R+ ++L + +N +L G +G GKTA+A L +R ++A
Sbjct: 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVAR-LVLRRLEA 70
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLL---SKRIMSLDMGLLMAGAKERGELEARV 371
+L G G GKT IA R V E F IMS K GE E+ +
Sbjct: 242 LLYGPPGTGKTLIA-----RAVANETGAFFFLINGPEIMS----------KLAGESESNL 286
Query: 372 TTLISEIQKSGDVILFIDEVHTL 394
E +K+ I+FIDE+ +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAI 309
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLL---SKRIMSLDMGLLMAGAKERGELEARV 371
+L G G GKT IA R V E F IMS K GE E+ +
Sbjct: 242 LLYGPPGTGKTLIA-----RAVANETGAFFFLINGPEIMS----------KLAGESESNL 286
Query: 372 TTLISEIQKSGDVILFIDEVHTL 394
E +K+ I+FIDE+ +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAI 309
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLL---SKRIMSLDMGLLMAGAKERGELEARV 371
+L G G GKT IA R V E F IMS K GE E+ +
Sbjct: 242 LLYGPPGTGKTLIA-----RAVANETGAFFFLINGPEIMS----------KLAGESESNL 286
Query: 372 TTLISEIQKSGDVILFIDEVHTL 394
E +K+ I+FIDE+ +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAI 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,391,218
Number of Sequences: 62578
Number of extensions: 765265
Number of successful extensions: 2962
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2811
Number of HSP's gapped (non-prelim): 186
length of query: 725
length of database: 14,973,337
effective HSP length: 106
effective length of query: 619
effective length of database: 8,340,069
effective search space: 5162502711
effective search space used: 5162502711
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)