BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004878
(725 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42762|CLPD_ARATH Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana
GN=CLPD PE=1 SV=1
Length = 945
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/681 (74%), Positives = 575/681 (84%), Gaps = 6/681 (0%)
Query: 40 FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
+ IS+ + + F + T N RKR+K PIS+VFERFTERA++A+IFSQ+E
Sbjct: 42 YLGISLSNRTIHRFSTTPT----NLRRFPQRKRKKFTPISAVFERFTERAIRAIIFSQKE 97
Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW N+ D+ A
Sbjct: 98 AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEANS-DSKQEEAS 156
Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
+S + MPFSISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 157 STSYSKSTDMPFSISTKRVFEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLG 216
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI-SGKTAALKSPGRTRASALEQFCV 278
++N L A A++RL+GE+AK+GREPS + S SG+ A G+ + LEQFCV
Sbjct: 217 ANMNLLTAAALTRLKGEIAKDGREPSSSSKGSFESPPSGRIAGSGPGGKKAKNVLEQFCV 276
Query: 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338
DLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +A
Sbjct: 277 DLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEA 336
Query: 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398
P FLL+KRIMSLD+GLLMAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGSG
Sbjct: 337 SAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGSG 396
Query: 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPS 458
TVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EPS
Sbjct: 397 TVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPS 456
Query: 459 QEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518
+EDAV+ILLGLREKYEAHHNCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA
Sbjct: 457 EEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRAR 516
Query: 519 IELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVES 578
IE F++KKE CILSKPP+DYWQEI+TVQAMHEVV SR K DD A ++ E+V ES
Sbjct: 517 IEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAISDESGELVEES 576
Query: 579 SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAV 638
SLP A+ DDEP +VGPDDIAAVAS+WSGIPVQQITADERMLL+ LE+QL+ RV+GQDEAV
Sbjct: 577 SLPPAAGDDEPILVGPDDIAAVASVWSGIPVQQITADERMLLMSLEDQLRGRVVGQDEAV 636
Query: 639 AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698
AAISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTEL K+LAA YFGSE SMLRLDMSEY
Sbjct: 637 AAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEY 696
Query: 699 MERHTVSKLIGSPPGYVGVGE 719
MERHTVSKLIGSPPGYVG E
Sbjct: 697 MERHTVSKLIGSPPGYVGFEE 717
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD2 PE=2 SV=2
Length = 937
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/661 (65%), Positives = 519/661 (78%), Gaps = 31/661 (4%)
Query: 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID 135
+ + +VFERFTERAVKAV+FSQREA+ +G + V HLLLGL+AEDR P GFL SG+ ++
Sbjct: 65 VVVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAEDRSPLGFLASGVRVE 124
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGK------PFSSAAKMPFSISTKRVFEAAVEYSRSR 189
+AREA AA GK P A +PFS ++KRVFEAAVE+SR+
Sbjct: 125 RAREAC--------------RAAVGKEGLAQAPVGLATDVPFSGASKRVFEAAVEFSRNM 170
Query: 190 GYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKG 249
G NFI+PEHIALGLF ++D + VLK LGVD + LA A++R+QGELAK+GREP
Sbjct: 171 GCNFISPEHIALGLFNLNDPTTNNVLKSLGVDSSQLAKQALTRVQGELAKDGREPVGLSS 230
Query: 250 --VRENSI--SGKTAALKSPGRTR-ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQ 304
VRE GK+A +K + + SAL FC+DLT RAS LIDPVIGR+ EI+R++Q
Sbjct: 231 FKVREKFTPGGGKSAIVKYSNKNKEKSALALFCLDLTMRASGGLIDPVIGRKDEIERVVQ 290
Query: 305 ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364
I+CRRTKNNPILLGE+GVGKTAIAEGLA +I +VP+FL+ KRI+SLD+ LLMAGAKER
Sbjct: 291 IICRRTKNNPILLGEAGVGKTAIAEGLAHKIANGDVPIFLVGKRILSLDVALLMAGAKER 350
Query: 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL 424
GELEARVT+LI E++K+GDVILFIDEVHTLIGSG GRG+KG GLDI+NLLKP+L RGEL
Sbjct: 351 GELEARVTSLIREVRKAGDVILFIDEVHTLIGSGIAGRGSKGAGLDIANLLKPALARGEL 410
Query: 425 QCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484
QCIASTT DEHR F+KDKALARRFQPVL++EPSQEDAV+ILLGLREKYE +H CK+TLE
Sbjct: 411 QCIASTTLDEHRLHFDKDKALARRFQPVLVNEPSQEDAVKILLGLREKYETYHKCKYTLE 470
Query: 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEI 544
+INAAV+LSARYI+DR+LPDKAIDL+DEAGSRA +E FKRKKE+Q ILSK PD+YWQEI
Sbjct: 471 SINAAVYLSARYIADRHLPDKAIDLIDEAGSRARMESFKRKKEEQCSILSKSPDEYWQEI 530
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTS--EIVVESSLPSAS----DDDEPAVVGPDDIA 598
R VQ MHEV +++KY D E+V E AS D+P++VG ++IA
Sbjct: 531 RAVQNMHEVALTNKVKYSLNQNDQEDAVDIELVGEDKTSPASMLSTSTDKPSLVGSEEIA 590
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
V SLWSGIPVQQ+TADER LLVGL+++L+KRVIGQD+AV AIS+AVKRSRVGL DP+RP
Sbjct: 591 RVTSLWSGIPVQQLTADERKLLVGLDDELRKRVIGQDDAVLAISKAVKRSRVGLNDPDRP 650
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVG 718
A ++FCGPTGVGKTEL K+LAA YFGSES+ +RLDMSEYMERH VSKLIGSPPGY+G G
Sbjct: 651 IATLIFCGPTGVGKTELTKALAASYFGSESATVRLDMSEYMERHAVSKLIGSPPGYMGFG 710
Query: 719 E 719
E
Sbjct: 711 E 711
>sp|Q6H795|CLPD1_ORYSJ Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD1 PE=2 SV=1
Length = 938
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/649 (66%), Positives = 510/649 (78%), Gaps = 20/649 (3%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
FERFTERAVKAV+ SQREAK LG+ V +HLLLGLIAEDR GFL SGI I++ARE
Sbjct: 74 FERFTERAVKAVVLSQREAKGLGEGAVAPRHLLLGLIAEDRSAGGFLSSGINIERAREEC 133
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKM--PFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
I D P S +M PFS S KRVFE AVE+SR+ G +FI+PEH+
Sbjct: 134 RGIGAR------DLTPGAPSPSGSGLEMDIPFSGSCKRVFEVAVEFSRNMGCSFISPEHL 187
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS--- 256
AL LFT+DD + +L+ LG D + LA+VA++RLQ ELAK+ REP+ A + S
Sbjct: 188 ALALFTLDDPTTNSLLRSLGADPSQLASVALTRLQAELAKDCREPAGASSFKVPKKSPAG 247
Query: 257 -GKTAALKS-PGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
G++A KS + AL+QFC+DLT +AS IDP+IGRE EI+R++QI+CRRTKNNP
Sbjct: 248 AGRSAFSKSLNSKKEKGALDQFCLDLTTQASGGFIDPIIGREEEIERVVQIICRRTKNNP 307
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
ILLGE+GVGKTAIAEGLA+RI +VP++L++KRIMSLD+GLL+AGAKERGELE+RVT+L
Sbjct: 308 ILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRIMSLDVGLLIAGAKERGELESRVTSL 367
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
I E++++GDVILFIDEVH LIGSGTVG+G KG GLDI NLLKP L RGELQCIA+TT DE
Sbjct: 368 IREVREAGDVILFIDEVHNLIGSGTVGKG-KGAGLDIGNLLKPPLARGELQCIAATTLDE 426
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
HR FEKDKALARRFQPVL+ EPSQ+DAV+ILLGLREKYE +H CKFTLEAINAAV+LSA
Sbjct: 427 HRMHFEKDKALARRFQPVLVEEPSQDDAVKILLGLREKYETYHKCKFTLEAINAAVYLSA 486
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI DR LPDKAIDL+DEAGSRA +E F RKKE Q+ IL K PD+YWQEIR Q MHEVV
Sbjct: 487 RYIPDRQLPDKAIDLIDEAGSRARMESFNRKKEGQSSILLKSPDEYWQEIRAAQNMHEVV 546
Query: 555 QGSRLKY----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+++KY ++ A++ SE + E L S +EP VVG ++IA VASLWSGIPVQ
Sbjct: 547 SSNQMKYSPRQENGSAAIKAPSEDMNE--LTSELQVEEPIVVGTEEIARVASLWSGIPVQ 604
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
Q+TAD+R LLVGL+ +L+KRVIGQD+AV AISRAVKRSRVGL DP+RP A +LFCGPTGV
Sbjct: 605 QLTADDRKLLVGLDGELRKRVIGQDDAVMAISRAVKRSRVGLNDPDRPIATLLFCGPTGV 664
Query: 671 GKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
GKTEL K+LAA YFGSES+MLRLDMSEYMERHTVSKLIGSPPGY+G GE
Sbjct: 665 GKTELTKALAASYFGSESAMLRLDMSEYMERHTVSKLIGSPPGYIGYGE 713
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Cyanidium caldarium GN=clpC PE=3 SV=1
Length = 854
Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/684 (43%), Positives = 422/684 (61%), Gaps = 76/684 (11%)
Query: 52 FFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQ 111
F + T N N +C ++ ++FERFTE+AVK ++ +Q EA+ LG + V T+
Sbjct: 9 FLKAMLTLLNIKGNNMCWAHKK------NMFERFTEKAVKVIMLAQEEARRLGHNFVGTE 62
Query: 112 HLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKM 169
+LLG++ E GIT+ AR V I +G F A ++
Sbjct: 63 QILLGILGEGTGLAAKALKSMGITLKDARIEVEKII------------GRGSGFV-AIEI 109
Query: 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVA 229
PF+ K++ E A+E SR +N++ EH+ LGL +G A RVL+ LGVD+ L +
Sbjct: 110 PFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRS-N 168
Query: 230 VSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELI 289
+ R+ GE + + + + GR++ LE+F +LT A E +
Sbjct: 169 IIRMIGE-------------------TSEVSVGATSGRSKVPTLEEFGTNLTQMAVEGKL 209
Query: 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349
DPV+GR EI+R++QIL RRTKNNP+L+GE GVGKTAIAEGLA RI+ EVP L K++
Sbjct: 210 DPVVGRAKEIERVVQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIINNEVPDTLEDKKV 269
Query: 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409
++LD+ LL+AG K RGE E R+ ++ EI+ + +VIL IDEVHTLIG+G +
Sbjct: 270 ITLDVSLLVAGTKYRGEFEERLKKIMDEIRMADNVILVIDEVHTLIGAGAAE-----GAI 324
Query: 410 DISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL 469
D +N+LKP+L RGELQCI +TT +E+R EKD AL RRFQPV++ EP+ E+ + IL GL
Sbjct: 325 DAANILKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVMVEEPTVEETIEILRGL 384
Query: 470 REKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQ 529
R++YEAHH K + AI AA LS +YI+DR+LPDKAIDLVDEA SR + +K
Sbjct: 385 RDRYEAHHRLKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYKL----- 439
Query: 530 TCILSKPPDDYW--QEIRTVQAM-HEVV------QGSRLKYDDV-----VASMGDTSEIV 575
PP + +E+R +Q + +E++ + S+ + ++ +A++ +
Sbjct: 440 ------PPSAEYLDEELRHIQKIKNELIRSGDFEEASQFREREIEVKVQMAALMKAKKEA 493
Query: 576 VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQD 635
+E L P +V DDIA + S W+GIPV ++T E L+ +EE L R++GQ+
Sbjct: 494 IEEELAL-----NPPIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQN 548
Query: 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695
EAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVGKTEL K++A+ +FGSE +M+RLDM
Sbjct: 549 EAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDM 608
Query: 696 SEYMERHTVSKLIGSPPGYVGVGE 719
SEYMERHTVSKLIGSPPGYVG E
Sbjct: 609 SEYMERHTVSKLIGSPPGYVGYNE 632
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 922
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 316/696 (45%), Positives = 427/696 (61%), Gaps = 58/696 (8%)
Query: 37 MSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRR--KIIPISSVFERFTERAVKAVI 94
MS F + +H ++ + +R+ R + IP ++FERFTE+A+K ++
Sbjct: 46 MSGFSGLRTFNHLNTMMRPGLDFHSKVSKAVSSRRARAKRFIP-RAMFERFTEKAIKVIM 104
Query: 95 FSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQD 152
+Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 105 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------- 157
Query: 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAG 212
+G F A ++PF+ KRV E + E +R G+N+I EH+ LGL +G A
Sbjct: 158 -----GRGSGFV-AVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAA 211
Query: 213 RVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASA 272
RVL+ LG D ++ V R+ GE A +S++ + S +T
Sbjct: 212 RVLENLGADPTNIRT-QVIRMVGESA--------------DSVTATVGSGSSNNKT--PT 254
Query: 273 LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLA 332
LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE GVGKTAIAEGLA
Sbjct: 255 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLA 314
Query: 333 IRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392
RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S D+ILFIDEVH
Sbjct: 315 QRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVH 374
Query: 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPV 452
TLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD L RRFQPV
Sbjct: 375 TLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPDLERRFQPV 429
Query: 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512
+ EP+ ++ ++IL GLRE+YE HH ++T EA+ AA LS +YISDR+LPDKAIDLVDE
Sbjct: 430 KVPEPTVDETIQILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDE 489
Query: 513 AGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRT-VQAMHEVVQGS--------RLKYDD 563
AGSR + Q L + + +E+R V+ E V+ R K D
Sbjct: 490 AGSRVRL---------QHAQLPEEAKELDKEVRKIVKEKEEYVRNQDFEKAGELRDKEMD 540
Query: 564 VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGL 623
+ A + E E S DE +V DI + S W+GIPV +++ADE L+ +
Sbjct: 541 LKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKM 600
Query: 624 EEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683
E+ L KR+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA Y
Sbjct: 601 EDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYY 660
Query: 684 FGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
FGSE +M+RLDMSE+MERHTVSKLIGSPPGYVG E
Sbjct: 661 FGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE 696
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Guillardia theta GN=clpC PE=3 SV=1
Length = 819
Score = 527 bits (1357), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/645 (46%), Positives = 408/645 (63%), Gaps = 52/645 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ L +D+ + V RL G+ A+ ++ +G+
Sbjct: 108 LLLGLIREGEGVAARVLENLALDLTKVRT-QVIRLLGDTAEV------------SATNGQ 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T K+P LE+F +LT +A+E +DPVIGR+ EI+R+IQIL RRTKNNPIL+G
Sbjct: 155 TKG-KTP------TLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ +I EI
Sbjct: 208 EPGVGKTAIAEGLAQRINNRDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIIDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +D +N+LKP+L RGE+QCI +TT +E+R
Sbjct: 268 RVANNVILVIDEVHTLIGAGAAE-----GAIDAANILKPALARGEMQCIGATTLEEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS E+ + IL GLR++YE HH + EA++AA + +YI+
Sbjct: 323 IEKDSALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHKLVISDEALSAAAKFADQYIA 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q ++ D +EI ++ E V+
Sbjct: 383 DRFLPDKAIDLIDEAGSRV------RLMNSQLPPAARELDKELREI--LKQKDEAVRSQD 434
Query: 559 L----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ D + + S + E +VV +DIA + + W+GIPV ++T
Sbjct: 435 FETAGQLRDREMEIKAQIAAIAHSKKGDEENTKEVSVVTEEDIAQIVAAWTGIPVNKMTR 494
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ +EE L R+IGQDEAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVGKTE
Sbjct: 495 SESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 554
Query: 675 LAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
L K+LA+ +FGSE +M+RLDMSEYMERHTVSKLIGSPPGYVG E
Sbjct: 555 LTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNE 599
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra yezoensis GN=clpC PE=3 SV=1
Length = 821
Score = 527 bits (1357), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/651 (45%), Positives = 410/651 (62%), Gaps = 53/651 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L VDV+ + A + L GE A E ++SG
Sbjct: 110 MGLVREGEGVAARVLENLAVDVSSIRAEVIQML-GENA-------------EANVSGSNT 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 ---TQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ADNVILVIDEVHTLIGAGAAE-----GAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV++ EPS E+ + IL GLR++YE HH + A+ AA + +YISDR
Sbjct: 328 KDPALERRFQPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGSR + L + +E+R V + E ++
Sbjct: 388 FLPDKAIDLIDEAGSRVRL---------LNSQLPPAARELDKELRAVLKTKDEAIRAQ-- 436
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQIT 613
KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T
Sbjct: 437 KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 497 KSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 556
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE--YLS 722
EL K+LA+ +FGSE+SM+RLDMSEYMERHTVSKLIGSPPGYVG E YL+
Sbjct: 557 ELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLT 607
>sp|P51332|CLPC_PORPU ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra purpurea GN=clpC PE=3 SV=1
Length = 821
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/651 (45%), Positives = 410/651 (62%), Gaps = 53/651 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L VDV+ + A + L GE A E ++SG A
Sbjct: 110 MGLVREGEGVAARVLENLAVDVSSIRAEVIQML-GENA-------------EANVSGSNA 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 ---TQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ADNVILVIDEVHTLIGAGAAE-----GAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRF PV++ EPS E+ + IL GLR++YE HH + A+ AA + +YISDR
Sbjct: 328 KDPALERRFHPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGSR + L + +E+R V + E ++
Sbjct: 388 FLPDKAIDLIDEAGSRVRL---------LNSQLPPAARELDKELRAVLKTKDEAIRAQ-- 436
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQIT 613
KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T
Sbjct: 437 KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 497 KSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 556
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE--YLS 722
EL K+LA+ +FGSE+SM+RLDMSEYMERHTVSKLIGSPPGYVG E YL+
Sbjct: 557 ELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLT 607
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A,
chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1
Length = 926
Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust.
Identities = 309/658 (46%), Positives = 418/658 (63%), Gaps = 57/658 (8%)
Query: 74 KIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-G 131
+ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G
Sbjct: 87 RFVP-KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 145
Query: 132 ITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGY 191
I + AR V I +G F A ++PF+ KRV E ++E +R G+
Sbjct: 146 INLKDARVEVEKII------------GRGSGFI-AVEIPFTPRAKRVLELSLEEARQLGH 192
Query: 192 NFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR 251
N+I EH+ LGL +G A RVL+ LG D ++ V R+ GE S A G
Sbjct: 193 NYIGSEHLLLGLLREGEGVAARVLENLGADPTNIR-TQVIRMVGE-------SSEAVGA- 243
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
S+ G T+ LK P LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTK
Sbjct: 244 --SVGGGTSGLKMP------TLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTK 295
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+
Sbjct: 296 NNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERL 355
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT
Sbjct: 356 KKLMEEIKQSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATT 410
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH +T EAI AA
Sbjct: 411 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLHYTDEAIEAAAK 470
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAM 550
LS +YISDR+LPDKAIDL+DEAGSR + + L + + +E+R + +
Sbjct: 471 LSHQYISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPEEARELEKELRQITKEK 521
Query: 551 HEVVQGSRLKY-----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVA 601
+E V+G + D + S ++ ++ S ++ + GP DI +
Sbjct: 522 NEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIV 581
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+GIPV++++ DE L+ +EE L RVIGQDEAV AISRA++R+RVGLK+PNRP A+
Sbjct: 582 SSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIAS 641
Query: 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
+F GPTGVGK+ELAKSLA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVG E
Sbjct: 642 FIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE 699
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana
GN=CLPC1 PE=1 SV=1
Length = 929
Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust.
Identities = 309/680 (45%), Positives = 426/680 (62%), Gaps = 61/680 (8%)
Query: 51 QFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFT 110
Q FHS N +R + ++FERFTE+A+K ++ +Q EA+ LG + V T
Sbjct: 69 QDFHSKVRQAMNVPKGKASR-----FTVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 123
Query: 111 QHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAK 168
+ +LLGLI E L+S GI + AR V I +G F A +
Sbjct: 124 EQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------------GRGSGFV-AVE 170
Query: 169 MPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAV 228
+PF+ KRV E ++E +R G+N+I EH+ LGL +G A RVL+ LG D +++
Sbjct: 171 IPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRT- 229
Query: 229 AVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEEL 288
V R+ GE V N + G +++ K P LE++ +LT A E
Sbjct: 230 QVIRMVGE----------NNEVTAN-VGGGSSSNKMP------TLEEYGTNLTKLAEEGK 272
Query: 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348
+DPV+GR+ +I+R++QIL RRTKNNP L+GE GVGKTAIAEGLA RI +VP + K+
Sbjct: 273 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKK 332
Query: 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTG 408
+++LDMGLL+AG K RGE E R+ L+ EI++S ++ILFIDEVHTLIG+G
Sbjct: 333 VITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAE-----GA 387
Query: 409 LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468
+D +N+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EP+ ++ ++IL G
Sbjct: 388 IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKG 447
Query: 469 LREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQ 528
LRE+YE HH ++T E++ AA LS +YISDR+LPDKAIDL+DEAGSR + + +E
Sbjct: 448 LRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEA 507
Query: 529 QTCILSKPPDDYWQEIRTV-QAMHEVVQGSRLKY-----DDVVASMGDTSEIVV---ESS 579
+ + +E+R + + +E V+G + D + + S I E S
Sbjct: 508 R---------ELEKELRQITKEKNEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMS 558
Query: 580 LPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVA 639
+ +E +V DI + S W+GIPV++++ DE L+ +EE L KR+IGQDEAV
Sbjct: 559 KAESETGEEGPMVTESDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRIIGQDEAVK 618
Query: 640 AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699
AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA YFGSE +M+RLDMSE+M
Sbjct: 619 AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 678
Query: 700 ERHTVSKLIGSPPGYVGVGE 719
ERHTVSKLIGSPPGYVG E
Sbjct: 679 ERHTVSKLIGSPPGYVGYTE 698
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana
GN=CLPC2 PE=2 SV=1
Length = 952
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 299/649 (46%), Positives = 419/649 (64%), Gaps = 51/649 (7%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKARE 139
++FERFTE+A+K ++ SQ EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 113 AMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKVLKS 164
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 165 MGINLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHL 221
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A RVL+ LG D +++ V R+ GE N ++
Sbjct: 222 LLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE---------------NNEVTASV 265
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
S ++ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+GE
Sbjct: 266 GGGSSG-NSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILARRTKNNPCLIGE 324
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RI +VP + K +++LDMGLL+AG K RGE E R+ L+ EI+
Sbjct: 325 PGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLMEEIR 384
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 385 QSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTIDEYRKHI 439
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV + EP+ E+A++IL GLRE+YE HH ++T EA+ AA LS +YISD
Sbjct: 440 EKDPALERRFQPVKVPEPTVEEAIQILQGLRERYEIHHKLRYTDEALVAAAQLSHQYISD 499
Query: 500 RYLPDKAIDLVDEAGSRA---HIELFK--RKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
R+LPDKAIDL+DEAGSR H +L + R+ E+Q ++K ++ +R+ E+
Sbjct: 500 RFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKQLRQITKEKNEA---VRSQD--FEMA 554
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQ 610
R + ++ A + + V+ A ++E GP DI + + W+GIPV+
Sbjct: 555 GSHRDREIELKAEIAN----VLSRGKEVAKAENEAEEGGPTVTESDIQHIVATWTGIPVE 610
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++++DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 611 KVSSDESSRLLQMEQTLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGV 670
Query: 671 GKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
GK+ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVG E
Sbjct: 671 GKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE 719
>sp|P46523|CLPA_BRANA ATP-dependent Clp protease ATP-binding subunit clpA homolog,
chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2
SV=1
Length = 874
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 300/652 (46%), Positives = 408/652 (62%), Gaps = 55/652 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 38 VKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 97
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 98 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 144
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D +++ V R+ GE N +
Sbjct: 145 SEHLLLGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGE---------------NNEV 188
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ G + LE++ +LT A E +DPV+GR +I+R++QIL RRTKNNP
Sbjct: 189 TANVGG--GSGTNKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPC 246
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI V K++++LDMGLL AG K RGE E RV L+
Sbjct: 247 LIGEPGVGKTAIAEGLAQRIASGVVRETSEGKKVITLDMGLLAAGTKYRGEFEERVKKLM 306
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 307 EEIKQSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEY 361
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T E++ AA LS +
Sbjct: 362 RKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQ 421
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPD+AIDL+DEAGSR + + +E + + +E+R + +E V+
Sbjct: 422 YISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEAR---------ELEKELRQITKENEAVR 472
Query: 556 GSRLKY-----DDVVASMGDTSEIVV---ESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
G + D + + S I E S + DE +V DI + S W+GI
Sbjct: 473 GQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQHIVSSWTGI 532
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
V++++ DE LL+ +EE L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 533 LVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGP 592
Query: 668 TGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
TGVGK+ELAK+LAA YFG E +M+RLDMSE+MERHTVSKLIGSPPGYVG E
Sbjct: 593 TGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE 644
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,
chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1
Length = 923
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 306/656 (46%), Positives = 417/656 (63%), Gaps = 54/656 (8%)
Query: 74 KIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-G 131
+ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G
Sbjct: 85 RFVP-KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 143
Query: 132 ITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGY 191
I + AR V I +G F A ++PF+ KRV E ++E +R G+
Sbjct: 144 INLKDARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGH 190
Query: 192 NFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR 251
N+I EH+ LGL +G A RVL+ LG D +++ V R+ GE + A G
Sbjct: 191 NYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE-------SNEAVGA- 241
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
S+ G T+ K P LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTK
Sbjct: 242 --SVGGGTSGQKMP------TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTK 293
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+
Sbjct: 294 NNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERL 353
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT
Sbjct: 354 KKLMEEIKQSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATT 408
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T E + AA
Sbjct: 409 LDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEDLVAAAQ 468
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
LS +YISDR+LPDKAIDL+DEAGSR R + Q +K + ++I + +
Sbjct: 469 LSYQYISDRFLPDKAIDLIDEAGSRV------RLRHAQLPEEAKELEKELRQI--TKEKN 520
Query: 552 EVVQGS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
E V+G R + D+ A + + E S + D +V DI + S
Sbjct: 521 EAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSS 580
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV++++ DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +
Sbjct: 581 WTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFI 640
Query: 664 FCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
F GPTGVGK+ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVG E
Sbjct: 641 FSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE 696
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC1 PE=2 SV=2
Length = 918
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 297/653 (45%), Positives = 410/653 (62%), Gaps = 55/653 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 84 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 143
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 144 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 190
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 191 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 233
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 234 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 293
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 294 LIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 353
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 354 EEIKQNDDIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEY 408
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +++ AA LS +
Sbjct: 409 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDSLIAAAQLSYQ 468
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR + + L + +E+R V + +E V
Sbjct: 469 YISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPDEAKELDKELRQVTKDKNEAV 519
Query: 555 QGSRLK----YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSG 606
+G + D + +++ S + E VGP DI + S W+G
Sbjct: 520 RGQDFEKAGELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTG 579
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++++DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 580 IPVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 639
Query: 667 PTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
PTGVGK+ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVG E
Sbjct: 640 PTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE 692
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC2 PE=2 SV=2
Length = 919
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 294/646 (45%), Positives = 411/646 (63%), Gaps = 45/646 (6%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
S+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 87 SMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 146
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 147 RVEVEKII------------GRGNGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 193
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE + +
Sbjct: 194 HLLLGLLREGEGVAARVLESLGADPSNIRT-QVIRMIGETTE----------------AV 236
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+
Sbjct: 237 GAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 296
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 297 GEPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 356
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 357 IKQSDEIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRK 411
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T +A+ +A LS +YI
Sbjct: 412 HIEKDPALERRFQPVRVPEPTVDETIEILRGLRERYEIHHKLRYTDDALISAAKLSYQYI 471
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV-- 553
SDR+LPDKAIDL+DEAGSR + + +E + L + D + +R+ Q +
Sbjct: 472 SDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELDKELKQITKDKNEAVRS-QDFEKAGE 530
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
++ ++ + ++ D S+ E S + +V DI + S W+GIPV++++
Sbjct: 531 LRDREMELKAQITALIDKSK---EMSKAETESGETGPLVNEADIQHIVSSWTGIPVEKVS 587
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+DE L+ +EE L +RVIGQDEAV AISR+++R+RVGLK+PNRP A+ +F GPTGVGK+
Sbjct: 588 SDESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKS 647
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVG E
Sbjct: 648 ELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE 693
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/646 (43%), Positives = 390/646 (60%), Gaps = 53/646 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + SQ EA LG + + T+H+LLGL+ E G+ + K +
Sbjct: 2 MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + +P S P K+V E + + +R G++++ EH
Sbjct: 62 EEVEKLI-----------GVGKQPTQSIHYTP---RAKKVVELSQDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L ++ GR+ SG+
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESQAGRQGR----------SGQ 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLT A E IDPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 158 QSNASTP------TLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVLSRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAVAEGLAQQIIDNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 272 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E+ ++IL GLR++YEAHH T EAI AA LS RYI+
Sbjct: 327 IEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAASLSDRYIT 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E + + E +
Sbjct: 387 DRFLPDKAIDLIDEAGSKVRLRSY-----------TVPPNLKELEQKLDEVRKEKDAAVQ 435
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D+ + E + + E + V +DIAAV S W+G+PV ++T
Sbjct: 436 SQEFEKAASLRDSEQRFREELETTKNQWKEKQGQTDSEVTMEDIAAVVSTWTGVPVSKLT 495
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
DE L+ +E+ L RVIGQ EAV A+++A++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 496 KDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 555
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
ELA++LA F E +M+R+DMSEYMERH S+L+GSPPGYVG E
Sbjct: 556 ELARALAEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGYVGYDE 601
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus
subtilis (strain 168) GN=clpC PE=1 SV=1
Length = 810
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 291/644 (45%), Positives = 399/644 (61%), Gaps = 52/644 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI KA +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGIAA-KALQA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 53 L-GLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G N A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSSAA 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 153 GTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYISDR
Sbjct: 326 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + F + PP+ E + + E + +
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQSQ 434
Query: 561 YDDVVASMGDTSEIV---VESSLPSASDDD--EPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I
Sbjct: 435 EFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQT 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 495 ETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 554
Query: 676 AKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
A++LA FG E SM+R+DMSEYME+H+ S+L+GSPPGYVG E
Sbjct: 555 ARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDE 598
>sp|Q53LY0|CLPC3_ORYSJ Chaperone protein ClpC3, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC3 PE=2 SV=1
Length = 932
Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/646 (42%), Positives = 404/646 (62%), Gaps = 46/646 (7%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F+ FT++A+KA++ +Q EA+ LG ++ LLLG+I E +GI R A
Sbjct: 99 FDMFTDKAIKAIMMAQEEARRLGHHAAGSEQLLLGVIGEG--------TGIGAKVLRGAG 150
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+S+ + + + A +G P ++ F+ + K V +A+ E + G+N++ EH+ L
Sbjct: 151 LSLKAA--RAEVEKMAGRG-PGMVPMEIKFTPAAKNVLQASQEEAHQLGHNYVGSEHLLL 207
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL + G+A VLK D +++ + + + E +P A ++ G ++
Sbjct: 208 GLLR-EHGAALVVLKNFQADPSNIRSEVIRMISD--TSEDHQPVSA------AVGGGSST 258
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
K P L ++ +LT A E +DPV+GR+ ++ R++QIL RRTKNNP L+GE G
Sbjct: 259 TKIP------TLLEYGTNLTKLAEEGKLDPVVGRQNQVDRVVQILGRRTKNNPCLIGEPG 312
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RI VP + K +++LDMGLL+AG K RGE E R+ L+ E++++
Sbjct: 313 VGKTAIAEGLAQRIAAGNVPETIDGKTVITLDMGLLVAGTKYRGEFEERLKKLMDEVKQN 372
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILF+DEVHTL+G+G +G +D +N+LKP+L RGELQCI +TT DE+R EK
Sbjct: 373 GEIILFLDEVHTLVGAGAA----EGA-IDAANILKPALARGELQCIGATTIDEYRKHIEK 427
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T E++ AA LS +YISDR+
Sbjct: 428 DPALERRFQPVKVPEPTVDETIGILKGLRERYEIHHKVQYTDESLIAAARLSYQYISDRF 487
Query: 502 LPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
LPDKAIDLVDEAGS + E + +K+ + + K Q+ A+
Sbjct: 488 LPDKAIDLVDEAGSLVRLRNAQLPDEAKELEKKLKKIMAEKSEAIRSQDFEKAGAL---- 543
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA-VVGPDDIAAVASLWSGIPVQQIT 613
+G ++ + S+ D S+ E S + + P V D+ + S W+G+PV+++T
Sbjct: 544 RGEEVELKSEIMSLVDKSK---EMSKAAVDSGESPGPTVTEADVQHIVSSWTGVPVEKVT 600
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
DE L+ +E L +R++GQDEAV AISRA++R+RVGL+DP RP A+ +F GPTGVGK+
Sbjct: 601 VDESSRLLAMESSLHRRIVGQDEAVTAISRAIRRARVGLRDPRRPIASFIFAGPTGVGKS 660
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
ELAK+LAA Y+GS +M+RLDMSE+ME+HTV+KL+GSPPGYVG E
Sbjct: 661 ELAKALAAYYYGSPEAMVRLDMSEFMEKHTVAKLVGSPPGYVGYAE 706
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 284/656 (43%), Positives = 388/656 (59%), Gaps = 82/656 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y++ +T + S + +DIA V
Sbjct: 433 AQEFENAANLRDKQTKLEKQYEEAKNEWKNTQNGMSTS-------------LSEEDIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
+ +F GPTGVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/648 (43%), Positives = 395/648 (60%), Gaps = 66/648 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/648 (43%), Positives = 395/648 (60%), Gaps = 66/648 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/648 (43%), Positives = 395/648 (60%), Gaps = 66/648 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/648 (43%), Positives = 395/648 (60%), Gaps = 66/648 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/648 (43%), Positives = 395/648 (60%), Gaps = 66/648 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/648 (43%), Positives = 395/648 (60%), Gaps = 66/648 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/648 (43%), Positives = 395/648 (60%), Gaps = 66/648 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust.
Identities = 284/648 (43%), Positives = 394/648 (60%), Gaps = 66/648 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RY+SDR+LPDKAIDL+DEA S+ + ++ + QEI V+ +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRL---------KSHTTPNNLKEIEQEIEKVKNEKDAA 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIP 608
++ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP
Sbjct: 431 VHAQ-EFEN-AANLRD-KQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
GVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+P GYVG
Sbjct: 548 GVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPLGYVG 595
>sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=clpC PE=3 SV=1
Length = 817
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 274/656 (41%), Positives = 385/656 (58%), Gaps = 82/656 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G + IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLVSFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQEQMGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + +
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMSNKNAQAN 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L R DLT A + +DPV+GR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDGLAR-----------DLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 320 YRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSD 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y+D + + L +A + ++IA V
Sbjct: 433 AQEFENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
+ +F GPTGVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|Q5HRM8|CLPC_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=clpC PE=3 SV=1
Length = 817
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 274/656 (41%), Positives = 385/656 (58%), Gaps = 82/656 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G + IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLVSFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQEQMGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + +
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMSNKNAQAN 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L R DLT A + +DPV+GR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDGLAR-----------DLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 320 YRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSD 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y+D + + L +A + ++IA V
Sbjct: 433 AQEFENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
+ +F GPTGVGKTELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 275/658 (41%), Positives = 377/658 (57%), Gaps = 80/658 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + +Q + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDQ--------------TGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 SNKNATANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTIAILKGLRDRYEAHHRINISDEALEAAAKLSDC 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D T D+ + +DI V
Sbjct: 434 QEFENAANLRDKQTKLEKQYEDAKNEWKTTQ-------------GDQSTSLSKEDIGEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LE+ L RVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTKINETESDRLLNLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
+F GPTGVGKTELA++LA FG E +M+R+DMSE+ME+H VS+L+G+PPGYVG E
Sbjct: 541 FIFLGPTGVGKTELARALAESMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDE 598
>sp|Q49V34|CLPC_STAS1 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1
Length = 820
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 266/643 (41%), Positives = 380/643 (59%), Gaps = 56/643 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA + + +Q EA L + T+HLLLGL+ E P G A +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGI---------AAKV 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + + + G + ++ K+V E +++ +R +NF+ EHI
Sbjct: 50 LETFEITEEKVVEEVEKLIGHGQEQMGALHYTPRAKKVIELSMDEARKLHHNFVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL ++G A RV L D+N +++ + ++ K P ++ + + S T
Sbjct: 110 LGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMSNKNAQANKSNNTP 161
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP+L+GE
Sbjct: 162 TLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++ EI +
Sbjct: 211 GVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKNIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ +A LS RY+SDR
Sbjct: 326 KDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALVSAAKLSHRYVSDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQAMHEV 553
+LPDKAIDL+DEA S+ ++ ++ EQQ + D + QE + +
Sbjct: 386 FLPDKAIDLIDEASSKVRLKSHTTPPNLKEIEQQIEQVKNEKDAAVHAQEFENAANLRDK 445
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+Y++ + +T + + + +DI V + W+GIP+ +I
Sbjct: 446 QTKLEKQYEEANTNWKNTQ-------------NGDNTSLSEEDIGEVIAGWTGIPLTKIN 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LE+ L RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 ETESDRLLNLEDTLHNRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
ELA++LA FG + +M+R+DMSE+ME+H VS+L+G+PPGYVG
Sbjct: 553 ELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVG 595
>sp|P24428|CLPC_MYCLE Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium leprae (strain TN) GN=clpC PE=3 SV=2
Length = 848
Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust.
Identities = 265/646 (41%), Positives = 383/646 (59%), Gaps = 47/646 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLDSLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V +D QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQV------------EDIIGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
EL+K+LA FG + +++++DM E+ +R T S+L G+PPGYVG E
Sbjct: 561 ELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEE 606
>sp|P0A522|CLPC_MYCTU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1
Length = 848
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 268/646 (41%), Positives = 385/646 (59%), Gaps = 47/646 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
EL+K+LA FG + +++++DM E+ +R T S+L G+PPGYVG E
Sbjct: 561 ELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEE 606
>sp|P0A523|CLPC_MYCBO Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=clpC PE=3 SV=1
Length = 848
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 268/646 (41%), Positives = 385/646 (59%), Gaps = 47/646 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
EL+K+LA FG + +++++DM E+ +R T S+L G+PPGYVG E
Sbjct: 561 ELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEE 606
>sp|P49574|CLPC_ODOSI ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Odontella sinensis GN=clpC PE=3 SV=1
Length = 885
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 258/651 (39%), Positives = 391/651 (60%), Gaps = 50/651 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG---FLESGITIDKA 137
+FE+FTE A+K ++ SQ EA+ +G + V T+ LLLG+I + RH G + +T+ KA
Sbjct: 1 MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQ-RHGIGARALKKQKVTLKKA 59
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R ++ + +G F A+++PF+ KRV E AV + G NF+ E
Sbjct: 60 R------------REIELYIGRGTGFV-ASEIPFTPRAKRVLEMAVHEGKDLGQNFVGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI L L + DG A R L +LGV++ L + + ++ E +E L R + +
Sbjct: 107 HILLALISESDGVAMRTLDKLGVNIPKLRNLILMYIE-----ENQEEIL----RPLTQAE 157
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + + L+++ +++ A + +DPVIGR+ EI +I++L RR KNNP+L+
Sbjct: 158 KFLLEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKNNPVLI 217
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+AEGLA I+ + P FL +M+LD+G ++AG K RGE E R+ ++ E
Sbjct: 218 GEPGVGKTAVAEGLAQLIIAEKAPDFLDGNLLMALDLGSILAGTKYRGEFEERIKRIVEE 277
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+Q +IL IDE+HTL+G+G +D +N+LKP+L RG+ +CI +TT DE+R
Sbjct: 278 VQNDSAIILVIDEIHTLVGAGAAE-----GAVDAANILKPALARGKFRCIGATTIDEYRK 332
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQPV + EP+ + ILLGLR K+E HH + +A+ A L+ ++I
Sbjct: 333 YIERDPALERRFQPVHVKEPTVGVTIEILLGLRSKFEEHHTLSYHDKAVEQAAILADKFI 392
Query: 498 SDRYLPDKAIDLVDEAGSRAHIE-------LFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
+DR+LPDKAID++DEAGSR +E + + KE Q + K + + +
Sbjct: 393 ADRFLPDKAIDVLDEAGSRVRLENRRLPRGMKRLLKELQDTLRDKEESIKEHDFDIAKQL 452
Query: 551 --HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
HE+ + ++ I+ +L A + + + G D+A V + W+GIP
Sbjct: 453 VDHEMEVRTHIRIM--------KQSILTNETLGLARKEIDTVLEG--DVAEVIAGWTGIP 502
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V +I+ E L+ +EE L +R+IGQ A+ ++S+A++R+RVGL++P+RP A+ +F GPT
Sbjct: 503 VNKISDSESKRLLTMEETLHERLIGQHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPT 562
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
GVGKTEL K+L+ FG+E SM+RLDMSEYME+HTV+KLIGSPPGYVG E
Sbjct: 563 GVGKTELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNE 613
>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1
Length = 828
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/631 (40%), Positives = 380/631 (60%), Gaps = 39/631 (6%)
Query: 85 FTERAVKAV-IFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
T +A K + +++Q EAK L DMV +H+LLGL+ E + + ID R +
Sbjct: 6 LTSKAKKVIELYAQEEAKRLNHDMVTPEHILLGLLYESEALATRVLMRLKIDLDRLKL-- 63
Query: 144 IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGL 203
+ + A + +P + +++ + E +R+ +N+I EH+ LGL
Sbjct: 64 --------ELESAMVKSSTTKVFGTLPTAPRVQKLISRSAEEARALSHNYIGTEHLLLGL 115
Query: 204 FTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG--KTAA 261
+ G+A VL +G+++ L + L GV ++IS +T+
Sbjct: 116 LREESGTAYNVLTSMGLELTILRQEILKML---------------GVAGSNISSMEQTSQ 160
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+ + + L+QF DLT A ++ +D VIGRE E+ R++QIL RR KNNPILLGE G
Sbjct: 161 EDNVKKVKTPTLDQFARDLTKMARDKALDRVIGRENEVMRVVQILSRRKKNNPILLGEPG 220
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAI EGLA +IV A+VP LL KR+++LD+ ++AG K RGE E R+ ++ EI+K+
Sbjct: 221 VGKTAIVEGLAEKIVAADVPDILLKKRVLTLDLSSVVAGTKYRGEFEERIKNIVLEIKKA 280
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
++I+FIDE+HTLIG+G G +G LD +N+LKP+L RGE+QCI +TT +E++ EK
Sbjct: 281 SNIIIFIDELHTLIGAG----GAEG-ALDAANMLKPALSRGEIQCIGATTINEYKKYIEK 335
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQP+ + EPS ED + IL G++ KYE HH K+T EAINAA LS RYI +R+
Sbjct: 336 DGALVRRFQPINVEEPSIEDTIEILNGIKGKYEEHHKVKYTDEAINAAAVLSKRYIFERH 395
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
LPDKAIDL+DEAGSRA L + Q+ L K ++ Q+ + V ++++
Sbjct: 396 LPDKAIDLIDEAGSRAR--LLNMTRPQEFKDLEKKIEELNQQKKRVVESQNFEDAAKIR- 452
Query: 562 DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLV 621
D + S+ + E+ + + + DDI V S + IP++++ E L+
Sbjct: 453 -DEITSLQE--ELSKKEEKCREEREKIETFIEEDDIRHVISEITNIPIKRLLNSESKRLI 509
Query: 622 GLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAA 681
G+EE+L ++V+GQ EA+++IS+A++RSR GLK RP + +F GPTGVGKT LAK L+
Sbjct: 510 GMEEELHQKVVGQKEAISSISKAIRRSRAGLKTSKRPLGSFIFLGPTGVGKTALAKVLSE 569
Query: 682 CYFGSESSMLRLDMSEYMERHTVSKLIGSPP 712
FG +++R+DMSE+ME+ VS+LIG+PP
Sbjct: 570 FMFGDSDALIRIDMSEFMEKFAVSRLIGAPP 600
>sp|Q7V8B1|CLPB_PROMM Chaperone protein ClpB OS=Prochlorococcus marinus (strain MIT 9313)
GN=clpB PE=3 SV=1
Length = 865
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 276/708 (38%), Positives = 403/708 (56%), Gaps = 126/708 (17%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLE-SGITIDKAREAV 141
++FTE+ A++ +Q+ A+ + T+HLLL L+ ++ LE +G++I + AV
Sbjct: 6 DQFTEKGWAAIVLAQQLAQQRKHQQLETEHLLLSLLQQNALAGRILEKAGVSIGNLQTAV 65
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSI----STKRVFEAAVEYSRSRGYNFIAPE 197
+A Q +P AA P S+ + + A ++ ++ G +FI+ E
Sbjct: 66 -------------EAHLQEQPTMQAA--PDSVYLGKGVNDLLDQAEKHKQAFGDSFISIE 110
Query: 198 HIALGLFTVDDGSAGR-VLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
H+ L L D GR +L + GVD L VA+ ++G + P +G E
Sbjct: 111 HLLLAL--AGDNRCGRKLLNQAGVDAGKLK-VAIDAVRGNQKVTDQNP---EGTYE---- 160
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+LE++ DL+A A E +DPVIGR+ EI+R IQIL RRTKNNP+L
Sbjct: 161 ---------------SLEKYGRDLSAAAREGKLDPVIGRDDEIRRTIQILSRRTKNNPVL 205
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAI EGLA RIV +VP L ++++++LDMG L+AGAK RGE E R+ ++
Sbjct: 206 IGEPGVGKTAIVEGLAQRIVNGDVPAALQNRQLITLDMGALIAGAKYRGEFEERLKAVLK 265
Query: 377 EIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
E+ S G ++LFIDE+HT++G+G G +D SNLLKP L RGEL+CI +TT DEH
Sbjct: 266 EVTASEGQIVLFIDEIHTVVGAGATG-----GAMDASNLLKPMLARGELRCIGATTLDEH 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQ VL+ +P+ +D + IL GL+E+YE HH + A+ AA LS+R
Sbjct: 321 RQHIEKDPALERRFQQVLVDQPTVQDTISILRGLKERYEVHHGVRIADNALVAAAVLSSR 380
Query: 496 YISDRYLPDKAIDLVDEAG--------------------------------------SRA 517
YI+DR+LPDKAIDL+DE+ S+
Sbjct: 381 YIADRFLPDKAIDLMDESAARLKMEITSKPEEIDEIDRKIVQLEMEKLSLGRESDSVSKE 440
Query: 518 HIELFKRK----KEQQTCILSKPPDDYWQ--------------EIRTVQAM-------HE 552
+E +R+ EQQ+ + ++ WQ EI VQ ++
Sbjct: 441 RLEKLERELAELAEQQSALNAQ-----WQQEKGAIDDLSSLKEEIERVQLQVEQAKRSYD 495
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAV----VGPDDIAAVASLWSGIP 608
+ + + L+Y + SE E++L + + ++ V DDIA V + W+GIP
Sbjct: 496 LNKAAELEYGTLAGLQKQLSE--KETALAQDGEAGDKSLLREEVTEDDIADVIAKWTGIP 553
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+GLE +L +RVIGQ++AV A++ A++RSR GL DPNRP A+ LF GPT
Sbjct: 554 VAKLVQSEMEKLLGLEAELHQRVIGQEQAVQAVADAIQRSRAGLSDPNRPIASFLFLGPT 613
Query: 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
GVGKTEL+K+LA+ F SE++++R+DMSEYME+H+VS+LIG+PPGYVG
Sbjct: 614 GVGKTELSKALASQLFDSEAALVRIDMSEYMEKHSVSRLIGAPPGYVG 661
>sp|Q9A9T4|CLPB_CAUCR Chaperone protein ClpB OS=Caulobacter crescentus (strain ATCC 19089
/ CB15) GN=clpB PE=3 SV=1
Length = 859
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 284/692 (41%), Positives = 391/692 (56%), Gaps = 98/692 (14%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAREAVV 142
+++RA +AV +Q A + G +H+L L+ E D ++S G D+ V
Sbjct: 6 YSDRAKQAVQSAQSLALARGHQQFAPEHILKVLLEEKDGLSRALIQSAGGRPDQLDGGVE 65
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
++ T D + ++ T RVF A + +++ G F+ E + +
Sbjct: 66 TLLAKTPRVD-----------GAGGQLYMKPDTARVFAEAEKSAKAAGDAFVTTERLLIA 114
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
+ + G A ++ K GV L A + +G A N+ G
Sbjct: 115 I-AKEGGEAAKLFKEAGVSAQSLETAANAMRKGRTADSA-----------NAEEGY---- 158
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
AL+++ DLTA A + +DPVIGR+ EI+R IQ+L RRTKNNP+L+GE GV
Sbjct: 159 --------EALKRYARDLTAAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGV 210
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS- 381
GKTAI EGLA+RIV +VP L K+++SLDMG L+AGAK RGE E R+ ++ E+ +
Sbjct: 211 GKTAIVEGLALRIVNGDVPESLKDKKLLSLDMGSLIAGAKYRGEFEERLKAVLGEVTAAE 270
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G +ILFIDE+HTL+G+G KG G +D SNLLKP+L RGEL C+ +TT DE+R E
Sbjct: 271 GSIILFIDEMHTLVGAG------KGDGAMDASNLLKPALARGELHCVGATTLDEYRKHVE 324
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD ALARRFQPV +SEP+ ED V IL GL+EKYE HH + + AI AA LS RYI+DR
Sbjct: 325 KDAALARRFQPVFVSEPTVEDTVSILRGLKEKYEVHHGVRISDSAIVAAATLSNRYIADR 384
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTC------------ILSKPPD--------DY 540
+LPDKAIDLVDEA SR +++ + +E LSK D +
Sbjct: 385 FLPDKAIDLVDEASSRVRMQIDSKPEELDEIDRRLVQLKIEREALSKETDAASKQRLENL 444
Query: 541 WQEIRTVQ-----------AMHEVVQGS--------RLKYDDVVAS-MGDTS-------- 572
EI +Q A E V G+ RL+ D A GD +
Sbjct: 445 EVEIDDLQFRSDEMTARWKAEKEKVGGAAQAREALDRLRADLANAQRAGDFARAGQIQYG 504
Query: 573 EI-VVESSLPSASDDD----EPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQL 627
EI +E L A D P VV + IAAV S W+G+PV+++ ER L+ +E++L
Sbjct: 505 EIPALERRLAEAEAGDTQALTPEVVDAEQIAAVVSRWTGVPVEKMLEGEREKLLKMEDEL 564
Query: 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE 687
+ RV+GQDEA+ A+S AV+R+R GL+DP++P + LF GPTGVGKTEL KSLA F E
Sbjct: 565 RGRVVGQDEALEAVSDAVRRARAGLQDPSKPIGSFLFLGPTGVGKTELTKSLAEFLFADE 624
Query: 688 SSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
+++ R+DMSEYME+H+VS+LIG+PPGYVG E
Sbjct: 625 AAITRMDMSEYMEKHSVSRLIGAPPGYVGYDE 656
>sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana
GN=CLPB3 PE=1 SV=1
Length = 968
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 270/703 (38%), Positives = 385/703 (54%), Gaps = 110/703 (15%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITIDKA 137
+ FTE A ++++ S AK + +V T+HL+ L+ + NG F + G+ K
Sbjct: 80 QEFTEMAWQSIVSSPDVAKENKQQIVETEHLMKALLEQ---KNGLARRIFSKIGVDNTKV 136
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
EA Q K + AA + +F+ A ++ + ++++ E
Sbjct: 137 LEATEKFIQR-----------QPKVYGDAAGSMLGRDLEALFQRARQFKKDLKDSYVSVE 185
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ L DD G+ L +S E SL + SI G
Sbjct: 186 HLVLAF--ADDKRFGKQL---------FKDFQIS-----------ERSLKSAI--ESIRG 221
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + + + ALE++ DLTA A E +DPVIGR+ EI+R IQIL RRTKNNP+L+
Sbjct: 222 KQSVIDQDPEGKYEALEKYGKDLTAMAREGKLDPVIGRDDEIRRCIQILSRRTKNNPVLI 281
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI+EGLA RIVQ +VP L++++++SLDMG L+AGAK RGE E R+ ++ E
Sbjct: 282 GEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKE 341
Query: 378 IQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
+ S G +ILFIDE+HT++G+G +D NLLKP LGRGEL+CI +TT DE+R
Sbjct: 342 VTDSEGQIILFIDEIHTVVGAGAT-----NGAMDAGNLLKPMLGRGELRCIGATTLDEYR 396
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQ V + +P+ ED + IL GLRE+YE HH + + A+ A LS RY
Sbjct: 397 KYIEKDPALERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 456
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKR------------KKEQQTCILSKPPD------ 538
IS R+LPDKAIDLVDEA ++ +E+ + K E + L+ D
Sbjct: 457 ISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDELDRSVIKLEMERLSLTNDTDKASRER 516
Query: 539 -------------------DYWQ---------------------EIRTVQAMHEVVQGSR 558
+ W+ EI+ + +++ + +
Sbjct: 517 LNRIETELVLLKEKQAELTEQWEHERSVMSRLQSIKEEIDRVNLEIQQAEREYDLNRAAE 576
Query: 559 LKYDDV--VASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
LKY + + + +E + L S V+G DIA + S W+GIPV ++ E
Sbjct: 577 LKYGSLNSLQRQLNEAEKELNEYLSSGKSMFREEVLGS-DIAEIVSKWTGIPVSKLQQSE 635
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
R L+ LEE+L KRV+GQ+ AV A++ A++RSR GL DP RP A+ +F GPTGVGKTELA
Sbjct: 636 RDKLLHLEEELHKRVVGQNPAVTAVAEAIQRSRAGLSDPGRPIASFMFMGPTGVGKTELA 695
Query: 677 KSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
K+LA+ F +E +++R+DMSEYME+H VS+LIG+PPGYVG E
Sbjct: 696 KALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEE 738
>sp|O87444|CLPB_PLEBO Chaperone protein ClpB OS=Plectonema boryanum GN=clpB PE=2 SV=2
Length = 873
Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust.
Identities = 277/703 (39%), Positives = 381/703 (54%), Gaps = 110/703 (15%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP-NGFLESGITIDKAREAV 141
E+FTE+ +A+ +Q K + + T+HL+ L+ +D + F + + +D+ R+
Sbjct: 7 EKFTEKVWEAIYRTQEMYKQAQQQQIETEHLMKALLEQDGLAISIFNKLAVPVDRVRDR- 65
Query: 142 VSIWHSTNNQDTDD-AAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
TDD Q K S + + + A EY + +FI+ EH+
Sbjct: 66 -----------TDDFIRRQPKVSGSGTSVYWGRRADALLXRAEEYRKQFEDSFISIEHLL 114
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRE--NSISGK 258
LG + D SR L E R P AK +R + G
Sbjct: 115 LG-YAQD-----------------------SRFGKALLSEFRYPDEAK-LRNAIEQVRGN 149
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +LE++ DLT A E +DPVIGR+ EI+R IQIL RRTKNNP+L+G
Sbjct: 150 QKVTDQTPENKYESLEKYGRDLTQYAREGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP L +++++LDMG L+AGAK RGE E R+ ++ E+
Sbjct: 210 EPGVGKTAIAEGLAQRILSGDVPQSLKDRKLIALDMGALIAGAKYRGEFEERLKAVLKEV 269
Query: 379 QKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
S G++ILFIDE+HT++G+G +G +D NLLKP L RGEL+CI +TT DE+R
Sbjct: 270 TDSRGNIILFIDEIHTVVGAG----ATQG-AMDAGNLLKPMLARGELRCIGATTLDEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQ V + +PS ED + IL GL+E+YE HH K + A+ AA LS RYI
Sbjct: 325 YIEKDAALERRFQQVFVDQPSVEDTISILRGLKERYEVHHGVKISDSALVAAATLSTRYI 384
Query: 498 SDRYLPDKAIDLVDEA--------------------------------------GSRAHI 519
SDR+LP KAIDLVDEA GSR +
Sbjct: 385 SDRFLPSKAIDLVDEAAAKLKMEITSKPEELDEVDRKVLQLEMERLSLQKENDAGSRDRL 444
Query: 520 ELFKRK----KEQQTCI----------------LSKPPDDYWQEIRTVQAMHEVVQGSRL 559
E +R+ KE Q+ + L + D EI+ + +++ + + L
Sbjct: 445 ERLERELADFKEDQSKLNAQWQAEKSVITDLQKLKEEIDRVNLEIQQAERDYDLNRAAEL 504
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQITADE 616
KY + E ES L + V DIA + S W+GIPV ++ E
Sbjct: 505 KYGKLNELNRKVEE--TESQLSQIQKSGATLLREEVLESDIAEIISKWTGIPVSKLVESE 562
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ L++ L +RVIGQDEAV A+S A++RSR GL DPNRPTA+ +F GPTGVGKTELA
Sbjct: 563 MQKLLQLDDVLHQRVIGQDEAVTAVSDAIQRSRAGLSDPNRPTASFIFLGPTGVGKTELA 622
Query: 677 KSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
K+LAA F +E +M+R+DMSEYME+H+VS+LIG+PPGYVG E
Sbjct: 623 KALAAFLFDTEEAMVRIDMSEYMEKHSVSRLIGAPPGYVGYEE 665
>sp|Q9PKA8|CLPC_CHLMU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3
SV=1
Length = 870
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/655 (39%), Positives = 383/655 (58%), Gaps = 52/655 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP--NGFLESGITIDKAR 138
+FE+FT RA + + +++EA+ L + + T+H+LLGL+ + N G+ D A+
Sbjct: 17 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAK 76
Query: 139 EAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I + Q D A G+ K+ FE+A E + +N++ E
Sbjct: 77 NEVERLIGYGPEIQVYGDPALTGR-------------VKKSFESANEEASILEHNYVGTE 123
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ---------GELAKEGREPSLAK 248
H+ LG+ DG A +VL+ L +D + + L+ + S +
Sbjct: 124 HLLLGILNQADGVALQVLENLHIDPKEIRKEILKELETFNLQLPPSSSITPRNTNSSSSS 183
Query: 249 GVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR 308
+ +S+ G + P + SAL+ + DLT E +DPVIGR E++R+I ILCR
Sbjct: 184 SSKSSSLGGHSLGGDKP--EKLSALKAYGYDLTEMFKEARLDPVIGRSAEVERLILILCR 241
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
R KNNP+L+GE+GVGKTAI EGLA +IV EVP L KR+++LD+ L++AG K RG+ E
Sbjct: 242 RRKNNPVLIGEAGVGKTAIVEGLAQKIVSGEVPEALRKKRLITLDLALMIAGTKYRGQFE 301
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428
R+ ++ E++K G+++LFIDE+HT++G+G +D S++LKP+L RGE+QCI
Sbjct: 302 ERIKAVMDEVRKHGNILLFIDELHTIVGAGAA-----EGAIDASHILKPALARGEIQCIG 356
Query: 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488
+TT DE+R EKD AL RRFQ +++ PS ++ V IL GL++KYE HHN T EA+ A
Sbjct: 357 ATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVFITDEALVA 416
Query: 489 AVHLSARYISDRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYW 541
A LS +Y+ R+LPDKAIDL+DEAG+R + EL + + E ++ +K
Sbjct: 417 AAKLSDQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPSELLRLEAEIESTKQAKEQAIGT 476
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE ++ + + R K ++ E E +P DE AV A V
Sbjct: 477 QEYEKAASLRDEEKKLREKLSNMKQQWESNKE---EHQVPV----DEEAV------AQVV 523
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S+ +GIP ++T E L+ LE L+K+VIGQD+AVA+I RA++RSR G+KDPNRP +
Sbjct: 524 SVQTGIPAARLTEAESEKLLMLENTLQKKVIGQDQAVASICRAIRRSRTGIKDPNRPMGS 583
Query: 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
LF GPTGVGKT LA+ +A FG E S++++DMSEYME+ +K++GSPPGYVG
Sbjct: 584 FLFLGPTGVGKTLLAQQIAVEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVG 638
>sp|Q7NFE9|CLPB_GLOVI Chaperone protein ClpB OS=Gloeobacter violaceus (strain PCC 7421)
GN=clpB PE=3 SV=1
Length = 872
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 273/703 (38%), Positives = 392/703 (55%), Gaps = 112/703 (15%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAV 141
+FTE+A A++ + AK + + ++HL L+ +D G F ++G+ + K E V
Sbjct: 8 QFTEKAWDAIVRTTEVAKEYRQQQLESEHLFKALLDQDGGLAGSIFTKAGVNLTKLGERV 67
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ Q K + + S + + A + + G +FI+ EH+ L
Sbjct: 68 EQFINR-----------QPKLTNPGQSVYLGRSLDALLDRAEGFRKEYGDDFISIEHLVL 116
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
F D ++L+ +D L AV V++++G +
Sbjct: 117 A-FAKDVRFGQQILREFSLDEAKLKAV-VAQVRG---------------------NQKVT 153
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
++P T S L+++ DLT A E +DPVIGR+ EI+R IQIL RRTKNNP+L+GE G
Sbjct: 154 SQNPESTYES-LDKYGRDLTQLAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLIGEPG 212
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RIV +VP L +++++LDMG L+AG+K RGE E R+ +++E+ KS
Sbjct: 213 VGKTAIAEGLAQRIVSGDVPESLQGRKLIALDMGALIAGSKYRGEFEERLKAVLNEVTKS 272
Query: 382 -GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G ++LFIDE+HT++G+G +G +D NLLKP L RGEL+CI +TT DE+R E
Sbjct: 273 EGQIVLFIDEIHTVVGAG----ATQG-AMDAGNLLKPMLARGELRCIGATTLDEYRKYIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQ V + +P+ ED + IL GL+E+YE HH + + A+ AA LS RYISDR
Sbjct: 328 KDAALERRFQQVYVDQPTVEDTISILRGLKERYEVHHGVRISDSALVAAAVLSHRYISDR 387
Query: 501 YLPDKAIDLVDE--------------------------------------AGSRAHIELF 522
+LPDKAIDL+DE A SR +E
Sbjct: 388 FLPDKAIDLMDEAAAKLKMEITSKPEALDEVDRKILQLEMERLSLAKESDAASRDRLERL 447
Query: 523 KRK----KEQQTCILSKPPDDYWQE----IRTVQAMHE-------VVQGSRLKYDDVVAS 567
+++ KE+Q + ++ WQ I VQA+ E +Q + YD A+
Sbjct: 448 EKELADLKEEQRSLNAQ-----WQAEKDIIDQVQAVKEEIDQVNVQIQQAERDYDLNRAA 502
Query: 568 ---MGDTSEI-----VVESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQITADE 616
G SE+ + L + V +DIA + S W+GIPV ++ A E
Sbjct: 503 ELKYGKLSELQKRLDAADKQLSETQTSGRSLLREEVTEEDIAEIISKWTGIPVSKLVASE 562
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
R L+ LE++L KRV+GQ+EAV +S A++RSR GL DPNRP A+ +F GPTGVGKTELA
Sbjct: 563 REKLLHLEDELHKRVVGQEEAVRIVSEAIQRSRAGLADPNRPIASFIFLGPTGVGKTELA 622
Query: 677 KSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
K+LA+ F E++M+R+DMSEYME+H+VS+LIG+PPGYVG E
Sbjct: 623 KALASFLFDDENAMVRIDMSEYMEKHSVSRLIGAPPGYVGYDE 665
>sp|Q73IE4|CLPB_WOLPM Chaperone protein ClpB OS=Wolbachia pipientis wMel GN=clpB PE=3
SV=1
Length = 853
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 266/691 (38%), Positives = 385/691 (55%), Gaps = 95/691 (13%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
+FTE+A + +Q +A G + +HLL ++ ED ESG+ D
Sbjct: 3 LNKFTEKAKSLIQSAQMKALGAGHQIFMPEHLL-KVMLED-------ESGLVQDLINACG 54
Query: 142 VSIWHSTNNQDTDDAAAQGKPF---SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
++ + D D+A + P + + S +VFE ++ ++ +F+A E
Sbjct: 55 GNVQSIS---DAVDSAIKKLPVIEGPGSGGLQLSREIAKVFEDSIGIAKRNKDSFVAVER 111
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ GL D + G++L GV L +V +G
Sbjct: 112 LLQGLTAQKDDTVGKILAENGVTPQKLNSVVAEMRKG----------------------- 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++A + +A +++ D+T A + +DPVIGR+ EI+R +Q+ RRTKNNP+L+G
Sbjct: 149 SSADSPNSEEKLNAAKKYTKDVTELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA RIV +VP+ L ++++LD+G L+AG K RGE E R+ +I+E+
Sbjct: 209 EPGVGKTAIVEGLANRIVANDVPLGLHDAKVLALDLGALIAGTKFRGEFEERLKAVINEL 268
Query: 379 QKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++ G VILFIDE+HTL+G+G +D SNLLKP+L RGE++CI +TT DE+R
Sbjct: 269 SRAEGKVILFIDELHTLVGAGATS-----GAMDASNLLKPALARGEVRCIGATTLDEYRQ 323
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD ALARRFQPV IS+P++ D + IL GL+E+YE HH + T AI AA LS RYI
Sbjct: 324 HIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNRYI 383
Query: 498 SDRYLPDKAIDLVDEAGSRAHIEL-----------------------------------F 522
+DR+LPDKAIDL+DEA SR IE+
Sbjct: 384 TDRFLPDKAIDLIDEAASRVRIEMDSKPEVIDELERKVIQLKIEAEALKKESDENSKQRL 443
Query: 523 KRKKEQQTCILSKPPD--DYWQ----EIRTVQAMHEVVQGSRLKYDDVVAS--MGDTSEI 574
K+ E+ + SK D WQ +I +Q E + +R + + V S +G E+
Sbjct: 444 KKINEEIENLNSKFADLNSKWQMEKNKIARIQETAEKLDNARKELELVQRSGNLGRAGEL 503
Query: 575 V------VESSLPS---ASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEE 625
+ +E+ L + +D V DDIA + S W+GIPV + E+ L+ +E
Sbjct: 504 MYGVIPQLENELKNQEKVTDSFLKKEVTGDDIANIVSKWTGIPVDNMMHSEKEKLLNMEN 563
Query: 626 QLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
++ +RVIGQ +A+ AIS AV+RSR G++D N+P + LF GPTGVGKTELAK+LA F
Sbjct: 564 EIGRRVIGQKDAIEAISNAVRRSRSGVQDTNKPFGSFLFLGPTGVGKTELAKALAEFLFD 623
Query: 686 SESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
+S++LR DMSEYME+H+VSKLIG+PPGYVG
Sbjct: 624 DQSALLRFDMSEYMEKHSVSKLIGAPPGYVG 654
>sp|Q9Z8A6|CLPC_CHLPN Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2
Length = 845
Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/650 (39%), Positives = 383/650 (58%), Gaps = 45/650 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP--NGFLESGITIDKAR 138
+FE+FT RA + + +++EA+ L + + T+H+LLGL+ + N GI D AR
Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRNLGIDFDTAR 60
Query: 139 EAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I + Q D A G+ K+ FE+A E + +N++ E
Sbjct: 61 QEVERLIGYGPEIQVYGDPALTGR-------------VKKSFESANEEASLLEHNYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG---ELAKEGREPSLAKGVRENS 254
H+ LG+ D A +VL+ L +D + + L+ +L S + +S
Sbjct: 108 HLLLGILHQSDSVALQVLENLHIDPREVRKEILKELETFNLQLPPSSSSSSSSSRSNPSS 167
Query: 255 ISGKTA-ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
+L S + SAL+ + DLT E +DPVIGR +E++R+I ILCRR KNN
Sbjct: 168 SKSPLGHSLGSDKNEKLSALKAYGYDLTEMVRESKLDPVIGRSSEVERLILILCRRRKNN 227
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE+GVGKTAI EGLA +I+ EVP L KR+++LD+ L++AG K RG+ E R+
Sbjct: 228 PVLIGEAGVGKTAIVEGLAQKIILNEVPDALRKKRLITLDLALMIAGTKYRGQFEERIKA 287
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
++ E++K G+++LFIDE+HT++G+G +D SN+LKP+L RGE+QCI +TT D
Sbjct: 288 VMDEVRKHGNILLFIDELHTIVGAGAA-----EGAIDASNILKPALARGEIQCIGATTID 342
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQ +++ PS ++ + IL GL++KYE HHN T EA+ AA LS
Sbjct: 343 EYRKHIEKDAALERRFQKIVVHPPSVDETIEILRGLKKKYEEHHNVFITEEALKAAATLS 402
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRT 546
+Y+ R+LPDKAIDL+DEAG+R + +L K + E + L+K QE
Sbjct: 403 DQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPTDLMKLEAEIENTKLAKEQAIGTQEYEK 462
Query: 547 VQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+ + + R + + + E E +P DE AV A V SL +G
Sbjct: 463 AAGLRDEEKKLRERLQSMKQEWENHKE---EHQVPV----DEEAV------AQVVSLQTG 509
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IP ++T E L+ LE+ L+++VIGQ++AV +I RA++RSR G+KDPNRPT + LF G
Sbjct: 510 IPSARLTEAESEKLLKLEDTLRRKVIGQNDAVTSICRAIRRSRTGIKDPNRPTGSFLFLG 569
Query: 667 PTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
PTGVGK+ LA+ +A FG E +++++DMSEYME+ +K++GSPPGYVG
Sbjct: 570 PTGVGKSLLAQQIAIEMFGGEDALIQVDMSEYMEKFAATKMMGSPPGYVG 619
>sp|O84288|CLPC_CHLTR Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=clpC PE=3
SV=1
Length = 854
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 262/656 (39%), Positives = 383/656 (58%), Gaps = 55/656 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP--NGFLESGITIDKAR 138
+FE+FT RA + + +++EA+ L + + T+H+LLGL+ + N G+ D A+
Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAK 60
Query: 139 EAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I + Q D A G+ K+ FE+A E + +N++ E
Sbjct: 61 HEVERLIGYGPEIQVCGDPALTGR-------------VKKSFESANEEAALLEHNYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS--- 254
H+ LG+ DG A +VL+ L VD + + L E PS + R +
Sbjct: 108 HLLLGILNQSDGVALQVLENLHVDPKEIRKEILKEL--ETFNLQLPPSSSITPRNTNSSS 165
Query: 255 -------ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILC 307
+ G T P + SAL+ + DLT E +DPVIGR E++R+I ILC
Sbjct: 166 SSKSSSPLGGHTLGGDKP--EKLSALKAYGYDLTEMFKESRLDPVIGRSAEVERLILILC 223
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
RR KNNP+L+GE+GVGKTAI EGLA +IV EVP L KR+++LD+ L++AG K RG+
Sbjct: 224 RRRKNNPVLVGEAGVGKTAIVEGLAQKIVSGEVPEALRKKRLITLDLALMIAGTKYRGQF 283
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427
E R+ ++ E++K G+++LFIDE+HT++G+G +D S++LKP+L RGE+QCI
Sbjct: 284 EERIKAVMDEVRKHGNILLFIDELHTIVGAGAA-----EGAIDASHILKPALARGEIQCI 338
Query: 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487
+TT DE+R EKD AL RRFQ +++ PS ++ V IL GL++KYE HHN T EA+
Sbjct: 339 GATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVFITDEALV 398
Query: 488 AAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIR 545
AA LS +Y+ R+LPDKAIDL+DEAG+R + + +P D EI
Sbjct: 399 AAAKLSDQYVHGRFLPDKAIDLLDEAGARVRVN-----------TMGQPSDLVRLEAEIE 447
Query: 546 TVQAMHEVVQGSRLKYDDVVASMGDTSEIVVES----SLPSASDDDEPAV-VGPDDIAAV 600
+ E G++ +Y+ AS+ D + + E S+ +E V V + +A V
Sbjct: 448 KTKQAKEQAIGTQ-EYEK-AASLRDEEKKLREKLGNMKQQWESNKEEHQVPVDEEAVAQV 505
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
S+ +GIP ++T E L+ LE L+K+VIGQ +AVA+I RA++RSR G+KDPNRP
Sbjct: 506 VSVQTGIPAARLTEAESEKLLTLETTLQKKVIGQSQAVASICRAIRRSRTGIKDPNRPMG 565
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716
+ LF GPTGVGKT LA+ +A FG E S++++DMSEYME+ +K++GSPPGYVG
Sbjct: 566 SFLFLGPTGVGKTLLAQQIAIEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVG 621
>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1
Length = 854
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/505 (47%), Positives = 320/505 (63%), Gaps = 63/505 (12%)
Query: 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEG 330
+ALEQ+ +DLT +A E +DPVIGR+ EI+R+IQIL RRTKNNP+L+GE GVGKTA+ EG
Sbjct: 151 NALEQYGLDLTRQAEEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAVVEG 210
Query: 331 LAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE-IQKSGDVILFID 389
LA RIV+ +VP L KRI+SL MG L+AGAK RGE E R+ +I E +Q +G +ILFID
Sbjct: 211 LAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQETVQSAGQIILFID 270
Query: 390 EVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARR 448
E+HT++G+G K G +D N+LKP+L RGEL I +TT DE+R + EKD AL RR
Sbjct: 271 EIHTVVGAG------KAEGAVDAGNMLKPALARGELHLIGATTLDEYR-EIEKDPALERR 323
Query: 449 FQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508
FQPV + EPS E+ V IL G++EKYE HH + + A+ AA LS RYI+DR LPDKAID
Sbjct: 324 FQPVFVDEPSLEETVSILRGIKEKYEVHHGVRISDPALIAAAQLSHRYIADRKLPDKAID 383
Query: 509 LVDEAGSRAHIEL---------FKRKKEQ---QTCILSKPPD---------------DYW 541
LVDEA +R + L R+K Q + L K D D
Sbjct: 384 LVDEAAARLRMALESSPESIDALNRRKLQLEIEREALKKETDAESKFRLGELEKEIADLE 443
Query: 542 QEIRTVQAMHEV-------VQGSRLKYDDVVASMGDTSEIV---------------VESS 579
+EIR QA E ++ ++ + D+V + +E
Sbjct: 444 EEIRKQQAEWEAEREIMQKLRAAQQRLDEVRTQIEQAERAYDLNKAAPLRYGELPKLEQE 503
Query: 580 LPSASDDDEPA-----VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQ 634
+ +D A +V +DIAA+ S W+GIPV ++ ER L+ LE++L KRV+GQ
Sbjct: 504 VNELADRMAGAQFVRPMVTEEDIAAIVSRWTGIPVAKLMEGEREKLLRLEDELHKRVVGQ 563
Query: 635 DEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694
DEA+ A++ A++R+R GLKDPNRP + LF GPTGVGKTELAK+LAA F +E +M+R+D
Sbjct: 564 DEAIVAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAASLFDTEENMVRID 623
Query: 695 MSEYMERHTVSKLIGSPPGYVGVGE 719
MSEY E+HTV++LIG+PPGYVG E
Sbjct: 624 MSEYQEKHTVARLIGAPPGYVGYEE 648
>sp|Q72QU2|CLPB_LEPIC Chaperone protein ClpB OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=clpB PE=3 SV=1
Length = 860
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 271/697 (38%), Positives = 388/697 (55%), Gaps = 95/697 (13%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
++ T + +A+ +Q A+ LG + +H+L ++++ P+G + + I K +
Sbjct: 3 LDKLTSKLNEAIYNAQASAEKLGNPEISEEHILKEVLSQ---PDGLVP--LLISKLNLSP 57
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
S ST N G +++A + FS S + +AA E + +++ +HI L
Sbjct: 58 KSFLESTENALGKQPKVGG---NTSADVGFSRSAVSLLKAADEVRKELKDEYLSTDHILL 114
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL GS +LG++ + L + + +G K + ++S GKT
Sbjct: 115 GLMKNGTGSLKTEFLKLGLEYHKLLKITLENRKG------------KTIMDDSPEGKT-- 160
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
AL ++ +L A + +DPVIGR+ EI+R IQ+L RRTKNNP+L+GE G
Sbjct: 161 ---------DALAKYAKNLNELAKQGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPG 211
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAI EGLA +IVQ EVP + +K + +LD+G ++AGAK RGE E R+ L+ E++ S
Sbjct: 212 VGKTAIVEGLANKIVQGEVPEGIKNKTLYTLDLGSMIAGAKYRGEFEDRLKALLDEVKSS 271
Query: 382 -GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G+VILFIDE+HTL+G+G LD SN+LKP L RGEL+CI +TT E++ E
Sbjct: 272 DGEVILFIDEIHTLVGAGATE-----GALDASNMLKPMLARGELRCIGATTLKEYQKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EPS E+ V IL GL+ +YE HH + A+ AA LS RYISDR
Sbjct: 327 KDAALERRFQPVYVKEPSVEETVTILRGLKGRYELHHGIRILDSALIAAATLSNRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIEL----------FKR-----------KKEQQTC------IL 533
+LPDKA+DL+DEA S+ IE+ KR KKEQ T L
Sbjct: 387 FLPDKAVDLIDEASSKMRIEIDSMPEELDRANKRIQSLKIEREALKKEQDTASKERLKTL 446
Query: 534 SKPPDDYWQEIRTVQAMHEVVQGS--RL--------KYDDVVASMGDTSEIV-------- 575
+ + Q +T++A ++ + RL KY ++ A EI
Sbjct: 447 ERDLSEQEQNFQTLKARWDLEKSKIGRLKQIKEEIEKYKNLEAEAERRGEINRVAEIRYG 506
Query: 576 ----VESSLPSASDD---DEPAV------VGPDDIAAVASLWSGIPVQQITADERMLLVG 622
++ L SA+++ E A V +DIA + S W+GIPV ++ ER L+
Sbjct: 507 KLVDLQKELESANEELKKQESASRLLKEEVSEEDIANIVSRWTGIPVSKMLQGERAKLLL 566
Query: 623 LEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682
+E+ LK +VIGQD A+ +S AV+RSR G+ DPNRP LF GPTGVGKTE AK+LA
Sbjct: 567 MEDVLKTKVIGQDHALRLVSEAVQRSRAGIADPNRPIGTFLFLGPTGVGKTETAKALAEF 626
Query: 683 YFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
F ++M R+DMSEYME H+V++LIG+PPGYVG E
Sbjct: 627 LFDDVNAMTRIDMSEYMEAHSVARLIGAPPGYVGYDE 663
>sp|Q8F509|CLPB_LEPIN Chaperone protein ClpB OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=clpB
PE=3 SV=1
Length = 860
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 271/697 (38%), Positives = 388/697 (55%), Gaps = 95/697 (13%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
++ T + +A+ +Q A+ LG + +H+L ++++ P+G + + I K +
Sbjct: 3 LDKLTSKLNEAIYNAQASAEKLGNPEISEEHILKEVLSQ---PDGLVP--LLISKLNLSP 57
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
S ST N G +++A + FS S + +AA E + +++ +HI L
Sbjct: 58 KSFLESTENALGKQPKVGG---NTSADVGFSRSAVSLLKAADEVRKELKDEYLSTDHILL 114
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL GS +LG++ + L + + +G K + ++S GKT
Sbjct: 115 GLMKNGTGSLKTEFLKLGLEYHKLLKITLENRKG------------KTIMDDSPEGKT-- 160
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
AL ++ +L A + +DPVIGR+ EI+R IQ+L RRTKNNP+L+GE G
Sbjct: 161 ---------DALAKYAKNLNELAKQGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPG 211
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAI EGLA +IVQ EVP + +K + +LD+G ++AGAK RGE E R+ L+ E++ S
Sbjct: 212 VGKTAIVEGLANKIVQGEVPEGIKNKTLYTLDLGSMIAGAKYRGEFEDRLKALLDEVKSS 271
Query: 382 -GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G+VILFIDE+HTL+G+G LD SN+LKP L RGEL+CI +TT E++ E
Sbjct: 272 DGEVILFIDEIHTLVGAGATE-----GALDASNMLKPMLARGELRCIGATTLKEYQKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EPS E+ V IL GL+ +YE HH + A+ AA LS RYISDR
Sbjct: 327 KDAALERRFQPVYVKEPSVEETVTILRGLKGRYELHHGIRILDSALIAAATLSNRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIEL----------FKR-----------KKEQQTC------IL 533
+LPDKA+DL+DEA S+ IE+ KR KKEQ T L
Sbjct: 387 FLPDKAVDLIDEASSKMRIEIDSMPEELDRANKRIQSLKIEREALKKEQDTASKERLKTL 446
Query: 534 SKPPDDYWQEIRTVQAMHEVVQGS--RL--------KYDDVVASMGDTSEIV-------- 575
+ + Q +T++A ++ + RL KY ++ A EI
Sbjct: 447 ERDLSEQEQNFQTLKARWDLEKSKIGRLKQIKEEIEKYKNLEAEAERRGEINRVAEIRYG 506
Query: 576 ----VESSLPSASDD---DEPAV------VGPDDIAAVASLWSGIPVQQITADERMLLVG 622
++ L SA+++ E A V +DIA + S W+GIPV ++ ER L+
Sbjct: 507 KLVDLQKELESANEELKKQESASRLLKEEVSEEDIANIVSRWTGIPVSKMLQGERAKLLL 566
Query: 623 LEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682
+E+ LK +VIGQD A+ +S AV+RSR G+ DPNRP LF GPTGVGKTE AK+LA
Sbjct: 567 MEDVLKTKVIGQDHALRLVSEAVQRSRAGIADPNRPIGTFLFLGPTGVGKTETAKALAEF 626
Query: 683 YFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719
F ++M R+DMSEYME H+V++LIG+PPGYVG E
Sbjct: 627 LFDDVNAMTRIDMSEYMEAHSVARLIGAPPGYVGYDE 663
>sp|Q889C2|CLPB_PSESM Chaperone protein ClpB OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=clpB PE=3 SV=1
Length = 854
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/607 (42%), Positives = 352/607 (57%), Gaps = 93/607 (15%)
Query: 177 RVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE 236
R+ A ++ +G FI+ E + L ++ G++L GV L A++ L+GE
Sbjct: 89 RLLNQADRLAQQKGDQFISSELVLLAAMD-ENSKLGKLLLGQGVSKKALEN-AINNLRGE 146
Query: 237 LAKEGREPSLAKGVRENSISGKTAALKSPGRTRA-SALEQFCVDLTARASEELIDPVIGR 295
A+ P + AL+++ VDLT RA E +DPVIGR
Sbjct: 147 -----------------------GAVNDPNIEESRQALDKYTVDLTKRAEEGKLDPVIGR 183
Query: 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355
+ EI+R IQ+L RRTKNNP+L+GE GVGKTAIAEGLA RI+ EVP L KR++SLDMG
Sbjct: 184 DDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLRGKRLLSLDMG 243
Query: 356 LLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISN 413
L+AGAK RGE E R+ +L++E+ K G +ILFIDE+HT++G+G KG G +D N
Sbjct: 244 ALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAG------KGEGSMDAGN 297
Query: 414 LLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473
+LKP+L RGEL C+ +TT +E+R EKD AL RRFQ VL+ EPS+ED + IL GL+E+Y
Sbjct: 298 MLKPALARGELHCVGATTLNEYRQYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERY 357
Query: 474 EAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI------ELFKR--- 524
E HH T AI AA LS RYI+DR LPDKAIDL+DEA SR + E+ R
Sbjct: 358 EVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEVLDRLER 417
Query: 525 ------------KKEQQTCILSKPP----------------DDYWQ----EIRTVQAMHE 552
KKE+ + + ++ W E+ + +
Sbjct: 418 RLIQLKVEAQALKKEKDEAAIKRLEKLQEEIVRLEKEYADLEEIWTSEKAEVTGSAQIQQ 477
Query: 553 VVQGSRLKYDDVVASMGDTSEIV---------VESSLPSASDDDEP------AVVGPDDI 597
++ SR + + GD + + +E SL +P + V ++I
Sbjct: 478 KIEQSRQELE-AARRRGDLNRMAELQYGIIPDLERSLQMVDQHGKPENQLLRSKVTEEEI 536
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A V S W+GIPV ++ ER L+ +E L RVIGQ+EAV A+S AV+RSR GL DPNR
Sbjct: 537 AEVVSKWTGIPVSKMLEGEREKLLRMETLLHNRVIGQEEAVVAVSNAVRRSRAGLSDPNR 596
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV 717
P+ + +F GPTGVGKTEL K+LA F +E +M+R+DMSE+ME+H+V++LIG+PPGYVG
Sbjct: 597 PSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGY 656
Query: 718 --GEYLS 722
G YL+
Sbjct: 657 EEGGYLT 663
>sp|Q87AX8|CLPB_XYLFT Chaperone protein ClpB OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=clpB PE=3 SV=1
Length = 861
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/607 (42%), Positives = 355/607 (58%), Gaps = 89/607 (14%)
Query: 177 RVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE 236
R+F + ++ G F+A E L + D G G+ L+ G + + A A+ +L+G
Sbjct: 89 RLFHRTDKLAQQHGDQFMASEWFVLAVVD-DSGGLGQALRAAGAEKKKIEA-AIDKLRG- 145
Query: 237 LAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRE 296
G+T ++ R ALE++ +DLTARA +DPVIGR+
Sbjct: 146 --------------------GETVQTENAEEQR-QALEKYTIDLTARAESGKLDPVIGRD 184
Query: 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356
EI+R IQ+L RRTKNNP+L+GE GVGKTAI EGLA RIV EVP L SKR++SLD+G
Sbjct: 185 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRSKRLLSLDLGA 244
Query: 357 LMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNL 414
L+AGAK RGE E R+ +++++ K+ G VILFIDE+HT++G+G K G +D N+
Sbjct: 245 LIAGAKFRGEFEERLKGVLNDLAKNEGRVILFIDELHTMVGAG------KAEGAMDAGNM 298
Query: 415 LKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474
LKP+L RGEL CI +TT DE+R EKD AL RRFQ V + EP+ ED + IL GL+EKY
Sbjct: 299 LKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYA 358
Query: 475 AHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE-------------- 520
HH + T AI AA LS RYI+DR LPDKAIDL+DEA SR +E
Sbjct: 359 LHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418
Query: 521 ---------LFKRKK-----------EQQTCILSKPPDDYWQEIRTVQA-------MHEV 553
+ K++K E+ +L + D + R+ +A + E
Sbjct: 419 LIQLKIQREMLKKEKDEASKQRLVDLERDIEVLDREFSDLEEVWRSEKAALQGATKIKES 478
Query: 554 VQGSRLKYDDVV--ASMGDTSEI------VVESSLPSASDDDEPAV------VGPDDIAA 599
++ ++L + SEI +E L +AS ++ V ++IA
Sbjct: 479 IEQAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAE 538
Query: 600 VASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPT 659
V S W+GIPV ++ ER L+ +E L +RV+GQDEA+ +S AV+RSR GL DPNRP+
Sbjct: 539 VVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQDEAIKVVSDAVRRSRTGLSDPNRPS 598
Query: 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV-- 717
+ LF GPTGVGKTEL K+LA F S+ +M+R+DMSE+ME+H+V++LIG+PPGYVG
Sbjct: 599 GSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEKHSVARLIGAPPGYVGYEE 658
Query: 718 GEYLSRM 724
G YL+ +
Sbjct: 659 GGYLTEL 665
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,185,589
Number of Sequences: 539616
Number of extensions: 11021885
Number of successful extensions: 48085
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 903
Number of HSP's that attempted gapping in prelim test: 45722
Number of HSP's gapped (non-prelim): 2472
length of query: 725
length of database: 191,569,459
effective HSP length: 125
effective length of query: 600
effective length of database: 124,117,459
effective search space: 74470475400
effective search space used: 74470475400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)