Query 004878
Match_columns 725
No_of_seqs 542 out of 3829
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 14:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 1E-105 2E-110 898.8 55.3 581 84-720 1-582 (786)
2 CHL00095 clpC Clp protease ATP 100.0 6.7E-87 1.4E-91 788.2 59.2 593 81-720 1-600 (821)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 2.4E-85 5.1E-90 769.7 59.3 606 85-720 1-657 (852)
4 TIGR02639 ClpA ATP-dependent C 100.0 3.4E-83 7.4E-88 749.0 57.4 541 85-720 1-542 (731)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 2.6E-82 5.7E-87 750.8 57.6 596 85-720 1-656 (852)
6 PRK10865 protein disaggregatio 100.0 5.7E-81 1.2E-85 735.4 57.2 601 80-720 1-659 (857)
7 PRK11034 clpA ATP-dependent Cl 100.0 4.5E-79 9.8E-84 702.6 55.9 545 85-720 2-546 (758)
8 KOG1051 Chaperone HSP104 and r 100.0 3.2E-78 6.9E-83 685.6 45.3 599 77-720 4-649 (898)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 4.5E-43 9.8E-48 372.9 23.3 372 288-723 188-594 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 3.5E-36 7.5E-41 325.8 20.8 295 309-723 216-517 (693)
11 KOG0736 Peroxisome assembly fa 100.0 8.5E-32 1.8E-36 293.9 22.8 324 291-723 402-754 (953)
12 KOG0735 AAA+-type ATPase [Post 100.0 1E-30 2.2E-35 282.8 20.3 305 309-723 429-750 (952)
13 TIGR01243 CDC48 AAA family ATP 100.0 7E-30 1.5E-34 300.8 25.9 327 286-723 174-536 (733)
14 KOG0741 AAA+-type ATPase [Post 99.9 6.7E-23 1.5E-27 215.9 20.9 307 303-698 248-574 (744)
15 COG1222 RPT1 ATP-dependent 26S 99.9 5.1E-22 1.1E-26 202.1 18.4 200 288-517 149-372 (406)
16 COG2256 MGS1 ATPase related to 99.9 5.2E-22 1.1E-26 205.3 16.8 198 278-516 12-219 (436)
17 KOG0730 AAA+-type ATPase [Post 99.9 2.4E-20 5.1E-25 203.3 20.8 201 287-517 431-652 (693)
18 COG1223 Predicted ATPase (AAA+ 99.8 3.8E-20 8.2E-25 179.8 17.5 194 282-498 113-320 (368)
19 COG0464 SpoVK ATPases of the A 99.8 5E-20 1.1E-24 208.7 21.5 303 304-723 11-325 (494)
20 COG0542 clpA ATP-binding subun 99.8 4.3E-19 9.2E-24 201.1 27.4 380 84-494 73-734 (786)
21 KOG0738 AAA+-type ATPase [Post 99.8 2.4E-19 5.2E-24 183.6 21.7 204 286-517 208-432 (491)
22 KOG0733 Nuclear AAA ATPase (VC 99.8 3.4E-19 7.5E-24 191.3 20.2 180 309-516 543-732 (802)
23 PF05496 RuvB_N: Holliday junc 99.8 8.6E-20 1.9E-24 177.8 13.9 189 278-514 12-226 (233)
24 KOG0736 Peroxisome assembly fa 99.8 1.5E-18 3.2E-23 191.0 23.4 204 287-517 669-895 (953)
25 CHL00195 ycf46 Ycf46; Provisio 99.8 1.7E-18 3.7E-23 191.8 24.1 203 287-515 225-442 (489)
26 KOG2028 ATPase related to the 99.8 5E-19 1.1E-23 179.4 15.9 188 277-496 125-329 (554)
27 PRK14956 DNA polymerase III su 99.8 2E-18 4.3E-23 187.9 19.5 203 278-516 6-229 (484)
28 KOG0739 AAA+-type ATPase [Post 99.8 6.5E-18 1.4E-22 167.2 19.4 188 288-498 131-336 (439)
29 TIGR02639 ClpA ATP-dependent C 99.8 3.4E-17 7.3E-22 192.8 29.3 179 290-493 454-690 (731)
30 PRK07003 DNA polymerase III su 99.8 2.7E-18 5.9E-23 192.9 18.5 203 278-516 4-227 (830)
31 KOG0734 AAA+-type ATPase conta 99.8 1.7E-18 3.8E-23 183.1 15.9 204 286-521 300-525 (752)
32 PRK03992 proteasome-activating 99.8 9.2E-18 2E-22 183.3 21.8 201 287-517 128-352 (389)
33 PTZ00454 26S protease regulato 99.8 1.6E-17 3.5E-22 180.3 22.0 202 287-517 142-366 (398)
34 PRK12323 DNA polymerase III su 99.8 4.8E-18 1E-22 188.8 17.6 202 278-515 4-231 (700)
35 PRK13342 recombination factor 99.8 9.8E-18 2.1E-22 185.1 19.9 194 279-515 1-202 (413)
36 KOG0989 Replication factor C, 99.8 6.3E-18 1.4E-22 169.1 16.0 203 276-514 22-235 (346)
37 TIGR02881 spore_V_K stage V sp 99.8 3.6E-17 7.8E-22 169.6 21.5 213 288-517 4-238 (261)
38 CHL00095 clpC Clp protease ATP 99.8 3.6E-16 7.8E-21 186.2 31.3 182 290-493 509-760 (821)
39 PTZ00361 26 proteosome regulat 99.8 4.5E-17 9.7E-22 177.9 20.3 203 285-517 178-404 (438)
40 TIGR01241 FtsH_fam ATP-depende 99.7 3.4E-17 7.4E-22 185.0 19.3 205 286-517 51-275 (495)
41 PRK14960 DNA polymerase III su 99.7 4E-17 8.6E-22 182.0 19.2 203 278-516 3-226 (702)
42 PRK14949 DNA polymerase III su 99.7 5E-17 1.1E-21 186.3 20.2 202 278-515 4-226 (944)
43 TIGR01243 CDC48 AAA family ATP 99.7 1.9E-16 4E-21 187.2 25.5 202 287-517 450-672 (733)
44 CHL00181 cbbX CbbX; Provisiona 99.7 1.4E-16 2.9E-21 166.4 21.6 210 291-516 24-253 (287)
45 CHL00176 ftsH cell division pr 99.7 1.3E-16 2.8E-21 182.3 22.8 204 287-517 180-403 (638)
46 KOG0731 AAA+-type ATPase conta 99.7 1E-16 2.2E-21 180.5 20.9 204 287-517 308-533 (774)
47 PRK11034 clpA ATP-dependent Cl 99.7 1.3E-15 2.9E-20 177.0 30.8 179 290-493 458-694 (758)
48 PLN03025 replication factor C 99.7 4.4E-17 9.5E-22 174.0 17.1 197 278-511 1-202 (319)
49 PRK07994 DNA polymerase III su 99.7 6.2E-17 1.4E-21 183.4 19.2 202 278-515 4-226 (647)
50 KOG0735 AAA+-type ATPase [Post 99.7 6E-17 1.3E-21 176.7 17.6 198 288-514 665-882 (952)
51 PRK13341 recombination factor 99.7 8E-17 1.7E-21 186.2 19.2 200 279-515 17-223 (725)
52 PRK14962 DNA polymerase III su 99.7 1.4E-16 3.1E-21 176.5 19.7 201 279-515 3-224 (472)
53 PLN00020 ribulose bisphosphate 99.7 1.2E-16 2.6E-21 166.0 17.5 159 308-492 145-327 (413)
54 PRK14964 DNA polymerase III su 99.7 1.6E-16 3.4E-21 175.2 19.3 203 279-517 2-225 (491)
55 PRK14958 DNA polymerase III su 99.7 1.3E-16 2.9E-21 178.6 18.8 203 278-516 4-227 (509)
56 PRK00080 ruvB Holliday junctio 99.7 8.4E-16 1.8E-20 164.9 24.3 189 281-517 16-230 (328)
57 KOG0740 AAA+-type ATPase [Post 99.7 2E-16 4.2E-21 168.6 18.6 203 285-515 148-369 (428)
58 COG2255 RuvB Holliday junction 99.7 1E-15 2.3E-20 151.7 22.1 193 279-519 15-233 (332)
59 COG0464 SpoVK ATPases of the A 99.7 2.7E-16 5.9E-21 178.2 20.3 204 286-517 238-462 (494)
60 TIGR01242 26Sp45 26S proteasom 99.7 5E-16 1.1E-20 169.0 21.1 201 287-517 119-343 (364)
61 PRK14957 DNA polymerase III su 99.7 3.5E-16 7.6E-21 174.9 20.1 203 278-516 4-227 (546)
62 PRK07764 DNA polymerase III su 99.7 2.7E-16 5.9E-21 183.9 19.9 201 279-515 4-227 (824)
63 TIGR00635 ruvB Holliday juncti 99.7 2E-15 4.2E-20 160.7 24.9 181 288-516 2-208 (305)
64 PRK14952 DNA polymerase III su 99.7 3.8E-16 8.3E-21 176.2 20.4 200 280-515 3-225 (584)
65 TIGR03689 pup_AAA proteasome A 99.7 1.5E-16 3.2E-21 176.1 16.6 180 284-471 176-379 (512)
66 TIGR02880 cbbX_cfxQ probable R 99.7 1.3E-15 2.9E-20 159.1 22.7 209 291-516 23-252 (284)
67 PRK14951 DNA polymerase III su 99.7 2.6E-16 5.6E-21 178.1 18.4 203 278-516 4-232 (618)
68 PRK14961 DNA polymerase III su 99.7 4.9E-16 1.1E-20 168.6 18.9 203 278-516 4-227 (363)
69 KOG0728 26S proteasome regulat 99.7 6.1E-16 1.3E-20 149.7 16.9 207 282-517 139-368 (404)
70 PRK06645 DNA polymerase III su 99.7 5.8E-16 1.2E-20 172.2 19.3 205 277-517 8-237 (507)
71 TIGR03346 chaperone_ClpB ATP-d 99.7 1.4E-14 3.1E-19 173.1 31.8 181 290-492 565-803 (852)
72 KOG0737 AAA+-type ATPase [Post 99.7 4E-16 8.6E-21 160.4 15.4 183 288-498 90-297 (386)
73 PRK08691 DNA polymerase III su 99.7 7.6E-16 1.7E-20 173.5 18.4 203 278-516 4-227 (709)
74 KOG0727 26S proteasome regulat 99.7 7.2E-16 1.6E-20 149.4 15.3 147 308-473 186-342 (408)
75 PRK14959 DNA polymerase III su 99.7 1.2E-15 2.5E-20 171.5 19.1 200 278-513 4-224 (624)
76 TIGR02902 spore_lonB ATP-depen 99.7 1.1E-15 2.5E-20 172.9 17.9 214 276-517 51-312 (531)
77 CHL00195 ycf46 Ycf46; Provisio 99.7 2.2E-15 4.8E-20 167.1 19.1 226 382-723 81-308 (489)
78 PHA02544 44 clamp loader, smal 99.7 3E-15 6.6E-20 160.1 19.0 186 277-494 8-200 (316)
79 PRK08451 DNA polymerase III su 99.7 3.5E-15 7.6E-20 166.0 19.7 203 279-517 3-226 (535)
80 PRK14963 DNA polymerase III su 99.7 3E-15 6.5E-20 167.4 18.9 200 280-515 4-223 (504)
81 PRK14969 DNA polymerase III su 99.7 1.5E-15 3.4E-20 171.2 16.8 202 279-516 5-227 (527)
82 CHL00206 ycf2 Ycf2; Provisiona 99.7 2.6E-15 5.7E-20 180.3 19.3 178 309-518 1628-1858(2281)
83 PRK05896 DNA polymerase III su 99.7 3.6E-15 7.9E-20 166.7 19.1 199 278-512 4-223 (605)
84 PRK12402 replication factor C 99.6 5.9E-15 1.3E-19 159.4 20.1 191 279-496 4-219 (337)
85 KOG0652 26S proteasome regulat 99.6 1.4E-15 2.9E-20 148.2 13.2 185 288-496 169-376 (424)
86 PRK09111 DNA polymerase III su 99.6 4.9E-15 1.1E-19 168.3 19.9 203 278-516 12-240 (598)
87 PRK04195 replication factor C 99.6 2.8E-15 6.1E-20 168.8 17.8 184 278-497 2-196 (482)
88 KOG0991 Replication factor C, 99.6 1.3E-15 2.8E-20 146.2 12.6 195 270-497 7-208 (333)
89 PRK07133 DNA polymerase III su 99.6 7E-15 1.5E-19 167.6 20.3 201 278-514 6-224 (725)
90 PRK05563 DNA polymerase III su 99.6 6E-15 1.3E-19 167.6 19.6 201 279-515 5-226 (559)
91 KOG0729 26S proteasome regulat 99.6 1.1E-15 2.4E-20 149.2 11.6 200 288-517 175-398 (435)
92 COG0465 HflB ATP-dependent Zn 99.6 2.3E-15 5E-20 167.0 15.5 205 287-520 147-373 (596)
93 PRK14965 DNA polymerase III su 99.6 4.8E-15 1E-19 169.1 18.4 202 279-516 5-227 (576)
94 PRK08084 DNA replication initi 99.6 1.5E-14 3.3E-19 147.4 19.5 179 288-497 20-203 (235)
95 TIGR03345 VI_ClpV1 type VI sec 99.6 1.3E-13 2.8E-18 163.6 29.3 184 290-495 566-811 (852)
96 KOG0726 26S proteasome regulat 99.6 5.2E-16 1.1E-20 153.3 7.1 168 285-471 180-370 (440)
97 PRK06647 DNA polymerase III su 99.6 1.6E-14 3.5E-19 163.4 20.0 202 278-515 4-226 (563)
98 COG2812 DnaX DNA polymerase II 99.6 4.6E-15 9.9E-20 163.0 14.4 203 279-517 5-228 (515)
99 PRK14955 DNA polymerase III su 99.6 1.4E-14 2.9E-19 159.1 17.4 202 279-516 5-235 (397)
100 PRK06305 DNA polymerase III su 99.6 4E-14 8.6E-19 157.0 20.7 202 278-515 5-228 (451)
101 PRK14953 DNA polymerase III su 99.6 2.9E-14 6.4E-19 158.9 19.7 203 278-516 4-227 (486)
102 PRK10733 hflB ATP-dependent me 99.6 2E-14 4.3E-19 166.4 19.0 205 287-518 149-373 (644)
103 TIGR02397 dnaX_nterm DNA polym 99.6 3.4E-14 7.3E-19 154.6 19.6 201 279-515 3-224 (355)
104 PRK14954 DNA polymerase III su 99.6 3.8E-14 8.2E-19 161.2 20.0 202 279-516 5-235 (620)
105 PRK00440 rfc replication facto 99.6 3.7E-14 8.1E-19 151.9 17.6 201 278-515 5-209 (319)
106 PRK14970 DNA polymerase III su 99.6 6E-14 1.3E-18 153.2 19.4 203 278-516 5-216 (367)
107 PRK14948 DNA polymerase III su 99.6 6E-14 1.3E-18 160.5 19.5 190 277-496 3-215 (620)
108 PRK10865 protein disaggregatio 99.6 8E-13 1.7E-17 157.5 29.4 186 286-493 564-807 (857)
109 PRK14971 DNA polymerase III su 99.6 6.8E-14 1.5E-18 160.1 19.2 202 279-516 6-229 (614)
110 PF00004 AAA: ATPase family as 99.6 4.5E-14 9.7E-19 130.4 13.5 123 314-455 1-131 (132)
111 KOG0732 AAA+-type ATPase conta 99.6 5.3E-14 1.1E-18 162.8 16.1 206 287-515 262-487 (1080)
112 PRK14950 DNA polymerase III su 99.5 1.4E-13 3.1E-18 157.9 19.7 188 279-496 5-214 (585)
113 TIGR00763 lon ATP-dependent pr 99.5 6.6E-14 1.4E-18 165.9 17.1 183 291-498 321-539 (775)
114 PRK12422 chromosomal replicati 99.5 5.1E-13 1.1E-17 147.6 22.7 162 312-497 142-307 (445)
115 PRK14086 dnaA chromosomal repl 99.5 4.7E-13 1E-17 149.9 22.4 188 288-497 286-482 (617)
116 PF07724 AAA_2: AAA domain (Cd 99.5 2.1E-15 4.5E-20 145.2 3.2 65 657-721 1-70 (171)
117 PRK05642 DNA replication initi 99.5 2.8E-13 6.1E-18 137.8 18.2 155 311-497 45-202 (234)
118 PRK06893 DNA replication initi 99.5 2.5E-13 5.4E-18 137.9 17.5 180 286-497 12-197 (229)
119 KOG0651 26S proteasome regulat 99.5 3.7E-14 8E-19 142.0 10.4 169 285-472 127-318 (388)
120 TIGR00362 DnaA chromosomal rep 99.5 5.5E-13 1.2E-17 147.4 20.6 188 288-497 108-304 (405)
121 PRK00149 dnaA chromosomal repl 99.5 6.7E-13 1.5E-17 148.5 21.5 188 288-497 120-316 (450)
122 TIGR02903 spore_lon_C ATP-depe 99.5 4.6E-13 1E-17 154.0 20.3 213 277-517 141-402 (615)
123 PF00308 Bac_DnaA: Bacterial d 99.5 2.7E-13 5.8E-18 136.4 16.2 186 288-497 6-202 (219)
124 PRK14088 dnaA chromosomal repl 99.5 1.3E-12 2.9E-17 144.7 22.6 187 288-497 103-299 (440)
125 PRK07940 DNA polymerase III su 99.5 4E-13 8.7E-18 145.8 16.5 175 288-497 3-207 (394)
126 PTZ00112 origin recognition co 99.5 9.7E-13 2.1E-17 148.9 19.5 209 290-516 755-988 (1164)
127 PRK08727 hypothetical protein; 99.5 2.3E-12 4.9E-17 131.2 20.2 187 288-512 17-207 (233)
128 KOG0742 AAA+-type ATPase [Post 99.5 1.6E-12 3.4E-17 134.3 18.4 190 268-476 328-534 (630)
129 COG1222 RPT1 ATP-dependent 26S 99.5 2.6E-14 5.6E-19 146.2 4.7 62 643-723 173-234 (406)
130 PRK05201 hslU ATP-dependent pr 99.5 1.4E-12 2.9E-17 139.3 17.7 112 382-495 249-382 (443)
131 TIGR00390 hslU ATP-dependent p 99.5 1.5E-12 3.3E-17 138.8 17.7 112 382-495 247-380 (441)
132 KOG2035 Replication factor C, 99.5 2.5E-12 5.4E-17 127.1 17.3 193 280-498 3-223 (351)
133 TIGR03420 DnaA_homol_Hda DnaA 99.5 5.3E-12 1.2E-16 128.2 20.5 190 288-515 13-207 (226)
134 TIGR02928 orc1/cdc6 family rep 99.4 4.7E-12 1E-16 138.4 20.9 210 290-517 15-254 (365)
135 PRK14087 dnaA chromosomal repl 99.4 4.3E-12 9.2E-17 140.8 20.6 191 287-497 112-313 (450)
136 COG0466 Lon ATP-dependent Lon 99.4 1.8E-12 3.9E-17 143.5 17.3 197 291-512 324-556 (782)
137 PRK05342 clpX ATP-dependent pr 99.4 4E-12 8.6E-17 138.7 19.7 192 291-493 72-357 (412)
138 PRK00411 cdc6 cell division co 99.4 1.9E-11 4.1E-16 135.0 25.4 207 290-517 30-262 (394)
139 KOG2004 Mitochondrial ATP-depe 99.4 1.7E-12 3.7E-17 142.8 16.4 184 290-498 411-630 (906)
140 TIGR02640 gas_vesic_GvpN gas v 99.4 2.6E-12 5.7E-17 133.1 16.9 164 298-497 10-216 (262)
141 PRK08903 DnaA regulatory inact 99.4 6.8E-12 1.5E-16 127.6 19.0 173 286-496 14-192 (227)
142 PRK06620 hypothetical protein; 99.4 3.8E-12 8.3E-17 127.4 16.0 136 312-497 45-183 (214)
143 COG0593 DnaA ATPase involved i 99.4 1.5E-11 3.2E-16 131.8 21.4 164 310-497 112-280 (408)
144 PRK10787 DNA-binding ATP-depen 99.4 4.1E-12 8.9E-17 149.2 17.1 182 291-498 323-540 (784)
145 PRK09112 DNA polymerase III su 99.4 7.4E-12 1.6E-16 134.2 17.3 200 284-513 17-244 (351)
146 PRK07471 DNA polymerase III su 99.4 8.4E-12 1.8E-16 134.5 17.2 196 284-511 13-240 (365)
147 TIGR00602 rad24 checkpoint pro 99.4 8.9E-12 1.9E-16 141.7 17.4 223 277-515 71-329 (637)
148 PRK09087 hypothetical protein; 99.4 2.8E-11 6E-16 122.3 17.7 142 312-497 45-189 (226)
149 TIGR00763 lon ATP-dependent pr 99.3 1.3E-11 2.8E-16 146.6 16.6 123 589-721 281-403 (775)
150 TIGR00382 clpX endopeptidase C 99.3 5.4E-11 1.2E-15 129.1 18.9 193 291-494 78-364 (413)
151 PF05621 TniB: Bacterial TniB 99.3 1.1E-10 2.3E-15 119.8 19.4 214 290-517 34-269 (302)
152 PRK05564 DNA polymerase III su 99.3 5.1E-11 1.1E-15 127.1 16.8 174 288-495 2-182 (313)
153 PRK13407 bchI magnesium chelat 99.3 9.4E-11 2E-15 124.3 18.3 163 287-469 5-215 (334)
154 COG0466 Lon ATP-dependent Lon 99.3 3E-11 6.4E-16 134.0 14.9 119 586-716 281-401 (782)
155 COG1474 CDC6 Cdc6-related prot 99.3 2.1E-10 4.6E-15 123.4 21.1 209 291-521 18-249 (366)
156 COG5271 MDN1 AAA ATPase contai 99.3 1.8E-10 3.9E-15 134.4 21.0 44 661-710 1545-1588(4600)
157 PRK05201 hslU ATP-dependent pr 99.3 6.4E-12 1.4E-16 134.2 8.0 83 621-718 7-95 (443)
158 CHL00081 chlI Mg-protoporyphyr 99.3 2E-10 4.4E-15 121.9 19.4 165 288-469 15-231 (350)
159 KOG0727 26S proteasome regulat 99.3 3E-12 6.4E-17 124.5 4.3 49 646-701 180-228 (408)
160 KOG0990 Replication factor C, 99.3 4E-11 8.6E-16 121.3 12.2 212 269-517 20-240 (360)
161 TIGR02030 BchI-ChlI magnesium 99.3 2.9E-10 6.4E-15 120.8 19.4 163 289-468 3-217 (337)
162 KOG0744 AAA+-type ATPase [Post 99.3 3.7E-11 8E-16 121.2 11.8 152 314-473 180-343 (423)
163 PF05673 DUF815: Protein of un 99.3 2.6E-10 5.7E-15 113.3 17.6 165 287-485 24-218 (249)
164 KOG1969 DNA replication checkp 99.2 9.2E-11 2E-15 129.7 15.5 182 279-498 260-505 (877)
165 TIGR00678 holB DNA polymerase 99.2 1.5E-10 3.3E-15 114.0 15.7 161 301-496 3-184 (188)
166 PF06068 TIP49: TIP49 C-termin 99.2 2.4E-10 5.3E-15 119.1 17.4 96 383-495 279-382 (398)
167 TIGR01650 PD_CobS cobaltochela 99.2 7.6E-11 1.7E-15 123.1 13.4 169 296-494 51-253 (327)
168 COG1219 ClpX ATP-dependent pro 99.2 1.4E-10 3.1E-15 116.9 14.7 174 310-494 96-347 (408)
169 KOG0737 AAA+-type ATPase [Post 99.2 4.4E-12 9.5E-17 130.9 3.2 90 611-724 88-177 (386)
170 KOG2004 Mitochondrial ATP-depe 99.2 2.2E-10 4.7E-15 126.5 16.1 115 593-717 376-490 (906)
171 PRK07399 DNA polymerase III su 99.2 3.8E-10 8.3E-15 119.4 17.4 164 288-469 2-194 (314)
172 COG5271 MDN1 AAA ATPase contai 99.2 9.5E-10 2.1E-14 128.6 21.2 160 299-493 1533-1718(4600)
173 KOG0743 AAA+-type ATPase [Post 99.2 3.9E-10 8.5E-15 119.8 16.8 135 309-468 233-381 (457)
174 COG1224 TIP49 DNA helicase TIP 99.2 1E-09 2.2E-14 112.4 18.8 95 383-494 292-394 (450)
175 KOG0738 AAA+-type ATPase [Post 99.2 2.1E-11 4.5E-16 125.8 6.2 103 596-724 193-295 (491)
176 PRK08058 DNA polymerase III su 99.2 1.5E-10 3.3E-15 123.9 12.9 154 289-467 4-179 (329)
177 PRK13531 regulatory ATPase Rav 99.2 1.4E-09 3E-14 118.7 20.4 194 290-513 20-235 (498)
178 TIGR00390 hslU ATP-dependent p 99.2 4E-11 8.6E-16 128.1 7.6 88 621-723 4-98 (441)
179 TIGR00382 clpX endopeptidase C 99.2 4.9E-11 1.1E-15 129.4 8.4 85 621-719 69-162 (413)
180 PRK05342 clpX ATP-dependent pr 99.2 4.5E-11 9.7E-16 130.5 8.2 86 621-720 63-155 (412)
181 KOG0739 AAA+-type ATPase [Post 99.2 1.3E-10 2.7E-15 116.0 10.4 87 611-723 129-215 (439)
182 PRK11608 pspF phage shock prot 99.1 2.8E-10 6E-15 121.7 12.7 179 288-491 4-219 (326)
183 COG0470 HolB ATPase involved i 99.1 9E-10 1.9E-14 118.3 15.5 153 291-465 2-176 (325)
184 COG1223 Predicted ATPase (AAA+ 99.1 3.2E-11 6.9E-16 118.1 3.6 75 629-722 121-199 (368)
185 TIGR01817 nifA Nif-specific re 99.1 4.4E-10 9.6E-15 128.7 13.6 188 285-492 191-408 (534)
186 COG0714 MoxR-like ATPases [Gen 99.1 8.1E-10 1.8E-14 118.7 14.7 151 291-466 25-199 (329)
187 COG2204 AtoC Response regulato 99.1 8.4E-10 1.8E-14 120.1 14.6 184 288-491 139-353 (464)
188 PRK05707 DNA polymerase III su 99.1 1.4E-09 3E-14 115.8 16.0 163 311-510 22-204 (328)
189 PF13177 DNA_pol3_delta2: DNA 99.1 7.4E-10 1.6E-14 106.0 12.6 142 294-458 1-162 (162)
190 TIGR02974 phageshock_pspF psp 99.1 3.2E-10 6.9E-15 121.1 10.6 181 292-492 1-213 (329)
191 cd00009 AAA The AAA+ (ATPases 99.1 1E-09 2.2E-14 102.4 12.9 144 293-455 1-150 (151)
192 KOG0731 AAA+-type ATPase conta 99.1 7.4E-11 1.6E-15 133.7 5.2 75 630-723 312-393 (774)
193 PRK04132 replication factor C 99.1 1.3E-09 2.8E-14 127.3 15.7 161 314-515 567-737 (846)
194 PRK15429 formate hydrogenlyase 99.1 1.5E-09 3.2E-14 128.0 15.8 194 278-491 362-588 (686)
195 PRK08769 DNA polymerase III su 99.1 4.2E-09 9.1E-14 111.1 17.2 172 296-495 10-200 (319)
196 PF07724 AAA_2: AAA domain (Cd 99.1 2.8E-10 6E-15 109.7 7.6 117 310-434 2-131 (171)
197 TIGR02442 Cob-chelat-sub cobal 99.1 4.2E-09 9.2E-14 122.2 18.7 161 289-469 3-213 (633)
198 PF01637 Arch_ATPase: Archaeal 99.1 4.7E-10 1E-14 114.0 9.6 198 292-496 1-227 (234)
199 PHA02244 ATPase-like protein 99.1 1.7E-09 3.7E-14 114.1 13.8 124 309-459 117-263 (383)
200 KOG0729 26S proteasome regulat 99.0 1.1E-10 2.3E-15 114.7 3.7 61 644-723 200-260 (435)
201 PRK11331 5-methylcytosine-spec 99.0 1.8E-09 3.9E-14 117.0 13.5 151 289-457 174-358 (459)
202 PLN00020 ribulose bisphosphate 99.0 1.6E-10 3.4E-15 120.8 5.0 56 650-724 143-198 (413)
203 KOG0745 Putative ATP-dependent 99.0 5.6E-09 1.2E-13 109.5 16.3 174 310-494 225-488 (564)
204 PRK15424 propionate catabolism 99.0 3.1E-09 6.7E-14 119.6 15.7 186 287-488 216-434 (538)
205 PRK07993 DNA polymerase III su 99.0 7E-09 1.5E-13 110.7 17.4 178 296-511 8-206 (334)
206 PRK05022 anaerobic nitric oxid 99.0 2.1E-09 4.5E-14 122.1 13.9 185 288-492 185-400 (509)
207 TIGR02329 propionate_PrpR prop 99.0 4.3E-09 9.4E-14 118.6 16.1 179 287-488 209-419 (526)
208 PF00158 Sigma54_activat: Sigm 99.0 2.7E-09 5.8E-14 102.6 12.3 139 292-454 1-167 (168)
209 COG3604 FhlA Transcriptional r 99.0 7.1E-10 1.5E-14 118.7 9.0 185 288-492 221-436 (550)
210 KOG0734 AAA+-type ATPase conta 99.0 2.6E-10 5.6E-15 121.9 5.2 74 631-723 306-386 (752)
211 COG2607 Predicted ATPase (AAA+ 99.0 1.4E-08 3E-13 99.1 16.4 167 288-488 58-253 (287)
212 PRK11388 DNA-binding transcrip 99.0 3.8E-09 8.2E-14 123.8 15.0 177 288-492 323-534 (638)
213 KOG0728 26S proteasome regulat 99.0 1.9E-10 4.2E-15 111.9 3.3 77 628-723 146-230 (404)
214 smart00350 MCM minichromosome 99.0 1.5E-08 3.2E-13 114.9 18.3 206 290-519 203-455 (509)
215 COG1220 HslU ATP-dependent pro 99.0 1.1E-08 2.4E-13 104.2 15.2 112 382-495 250-383 (444)
216 PRK10820 DNA-binding transcrip 99.0 4.2E-09 9.1E-14 119.6 13.8 182 286-491 200-416 (520)
217 TIGR00764 lon_rel lon-related 99.0 1.1E-08 2.4E-13 117.6 17.2 122 382-519 217-373 (608)
218 COG1219 ClpX ATP-dependent pro 99.0 3.9E-10 8.5E-15 113.8 4.7 87 621-721 53-145 (408)
219 TIGR03015 pepcterm_ATPase puta 99.0 7.4E-08 1.6E-12 100.5 21.9 169 310-496 42-231 (269)
220 CHL00181 cbbX CbbX; Provisiona 99.0 7.2E-10 1.6E-14 116.0 6.6 83 618-701 12-105 (287)
221 COG3829 RocR Transcriptional r 99.0 1.3E-09 2.8E-14 118.3 8.6 181 286-491 241-458 (560)
222 PF01078 Mg_chelatase: Magnesi 99.0 6.7E-10 1.5E-14 108.3 5.7 132 288-434 1-160 (206)
223 PRK06871 DNA polymerase III su 99.0 3E-08 6.6E-13 104.8 18.7 149 296-468 8-177 (325)
224 COG1221 PspF Transcriptional r 99.0 2.2E-09 4.7E-14 114.9 9.9 201 286-517 74-309 (403)
225 PRK10787 DNA-binding ATP-depen 99.0 2.7E-09 5.8E-14 125.7 11.7 121 587-714 281-405 (784)
226 PF07728 AAA_5: AAA domain (dy 99.0 1.2E-09 2.6E-14 102.0 7.0 111 313-449 1-139 (139)
227 PF05496 RuvB_N: Holliday junc 98.9 2.4E-09 5.3E-14 105.1 8.4 72 629-707 24-95 (233)
228 PRK06964 DNA polymerase III su 98.9 1.4E-08 3E-13 108.1 14.3 153 297-468 8-202 (342)
229 KOG0741 AAA+-type ATPase [Post 98.9 4.5E-10 9.7E-15 120.0 2.6 49 661-723 258-306 (744)
230 COG1239 ChlI Mg-chelatase subu 98.9 5.6E-08 1.2E-12 103.1 18.2 162 289-471 16-233 (423)
231 KOG0726 26S proteasome regulat 98.9 6E-10 1.3E-14 110.9 2.7 76 629-723 185-268 (440)
232 smart00763 AAA_PrkA PrkA AAA d 98.9 2.1E-08 4.7E-13 106.0 14.0 94 384-491 238-347 (361)
233 PRK06090 DNA polymerase III su 98.9 3.7E-08 7.9E-13 103.9 15.8 149 296-467 9-177 (319)
234 TIGR02880 cbbX_cfxQ probable R 98.9 2.6E-09 5.7E-14 111.8 7.2 83 617-700 10-103 (284)
235 PTZ00454 26S protease regulato 98.9 9.7E-10 2.1E-14 119.8 3.9 49 646-701 170-218 (398)
236 TIGR02881 spore_V_K stage V sp 98.9 2.9E-09 6.3E-14 110.5 6.3 69 631-700 8-87 (261)
237 PTZ00111 DNA replication licen 98.9 4.1E-08 8.9E-13 114.3 16.1 208 290-518 450-733 (915)
238 PTZ00361 26 proteosome regulat 98.8 2.9E-09 6.2E-14 116.9 6.2 73 632-723 186-266 (438)
239 COG1220 HslU ATP-dependent pro 98.8 4.3E-09 9.3E-14 107.1 6.7 82 622-718 8-95 (444)
240 TIGR03689 pup_AAA proteasome A 98.8 2.6E-09 5.7E-14 118.8 5.6 76 632-723 185-275 (512)
241 PRK03992 proteasome-activating 98.8 2.8E-09 6.1E-14 116.7 5.7 64 631-701 133-204 (389)
242 PF06309 Torsin: Torsin; Inte 98.8 8.6E-09 1.9E-13 92.0 7.3 66 620-687 16-81 (127)
243 TIGR00368 Mg chelatase-related 98.8 8.5E-08 1.9E-12 107.4 16.8 150 288-461 190-395 (499)
244 PRK12377 putative replication 98.8 1.7E-08 3.8E-13 102.8 10.3 101 310-433 100-206 (248)
245 KOG1942 DNA helicase, TBP-inte 98.8 9E-08 2E-12 95.6 14.8 96 382-494 296-400 (456)
246 TIGR02031 BchD-ChlD magnesium 98.8 1.2E-07 2.7E-12 108.8 18.0 136 309-470 14-174 (589)
247 PF14532 Sigma54_activ_2: Sigm 98.8 6.4E-09 1.4E-13 97.0 5.6 129 293-457 1-136 (138)
248 PF07726 AAA_3: ATPase family 98.8 1.7E-08 3.8E-13 90.3 7.6 108 313-450 1-130 (131)
249 KOG0652 26S proteasome regulat 98.8 4.8E-09 1E-13 102.9 4.0 74 631-723 173-254 (424)
250 PRK08181 transposase; Validate 98.8 3.4E-08 7.4E-13 101.9 10.5 127 310-458 105-243 (269)
251 KOG0651 26S proteasome regulat 98.7 7.6E-09 1.7E-13 104.3 4.8 96 603-723 120-215 (388)
252 PRK08116 hypothetical protein; 98.7 1.8E-07 3.9E-12 97.1 14.7 131 312-459 115-251 (268)
253 PRK06526 transposase; Provisio 98.7 4.2E-08 9E-13 100.7 9.8 73 309-394 96-171 (254)
254 TIGR02915 PEP_resp_reg putativ 98.7 7.4E-08 1.6E-12 108.2 12.1 185 288-492 137-352 (445)
255 PRK08699 DNA polymerase III su 98.7 1.6E-07 3.4E-12 100.0 13.8 153 296-467 7-182 (325)
256 PRK13765 ATP-dependent proteas 98.7 1.7E-07 3.8E-12 107.4 14.7 123 382-520 226-383 (637)
257 KOG2227 Pre-initiation complex 98.7 1.8E-06 3.8E-11 92.3 20.6 206 290-517 150-379 (529)
258 TIGR01241 FtsH_fam ATP-depende 98.7 1.6E-08 3.4E-13 114.8 5.4 49 646-701 79-127 (495)
259 PRK10923 glnG nitrogen regulat 98.7 2.2E-07 4.8E-12 105.1 14.8 183 289-491 137-350 (469)
260 smart00382 AAA ATPases associa 98.7 1.8E-07 3.9E-12 86.3 11.7 125 311-455 2-145 (148)
261 COG0465 HflB ATP-dependent Zn 98.7 1.4E-08 3E-13 113.5 4.6 74 631-723 152-232 (596)
262 KOG2680 DNA helicase TIP49, TB 98.7 1E-06 2.2E-11 88.6 17.0 95 383-494 289-391 (454)
263 PF13173 AAA_14: AAA domain 98.7 8.7E-08 1.9E-12 88.1 9.0 123 312-461 3-126 (128)
264 PF02861 Clp_N: Clp amino term 98.7 3.5E-08 7.7E-13 75.4 5.0 51 96-146 1-53 (53)
265 TIGR01242 26Sp45 26S proteasom 98.6 8.8E-09 1.9E-13 112.3 1.9 65 630-701 123-195 (364)
266 PRK07952 DNA replication prote 98.6 1.6E-07 3.4E-12 95.6 10.9 88 298-394 84-174 (244)
267 PF03215 Rad17: Rad17 cell cyc 98.6 5.2E-07 1.1E-11 101.3 15.8 214 277-515 6-269 (519)
268 PRK09183 transposase/IS protei 98.6 1.7E-07 3.7E-12 96.8 10.3 106 267-394 68-176 (259)
269 COG0606 Predicted ATPase with 98.6 4.7E-08 1E-12 105.1 5.7 46 288-335 177-222 (490)
270 KOG1051 Chaperone HSP104 and r 98.6 2.5E-07 5.5E-12 107.6 12.0 122 290-433 562-711 (898)
271 COG1484 DnaC DNA replication p 98.6 1.3E-07 2.7E-12 97.3 8.5 103 310-433 104-209 (254)
272 PRK05917 DNA polymerase III su 98.6 9.7E-07 2.1E-11 91.4 15.0 138 297-457 4-154 (290)
273 PRK11331 5-methylcytosine-spec 98.6 1.1E-07 2.5E-12 103.2 8.2 77 631-719 177-254 (459)
274 KOG0740 AAA+-type ATPase [Post 98.6 2.1E-08 4.5E-13 107.7 2.3 85 611-723 149-235 (428)
275 PF13401 AAA_22: AAA domain; P 98.6 3E-07 6.6E-12 84.6 9.5 109 310-432 3-125 (131)
276 PF12775 AAA_7: P-loop contain 98.6 3.3E-07 7.3E-12 95.1 10.9 148 302-474 25-197 (272)
277 PF01695 IstB_IS21: IstB-like 98.5 1.3E-07 2.8E-12 91.9 6.9 84 298-394 34-120 (178)
278 KOG0989 Replication factor C, 98.5 8.9E-08 1.9E-12 96.9 5.7 59 613-685 25-83 (346)
279 PRK11361 acetoacetate metaboli 98.5 5.3E-07 1.1E-11 101.7 11.5 183 289-491 142-355 (457)
280 CHL00176 ftsH cell division pr 98.5 9.6E-08 2.1E-12 109.9 5.5 64 631-701 185-255 (638)
281 COG2255 RuvB Holliday junction 98.5 2.9E-07 6.4E-12 92.3 8.1 62 630-698 27-88 (332)
282 PF02861 Clp_N: Clp amino term 98.5 1.8E-07 3.9E-12 71.5 5.1 52 182-233 1-52 (53)
283 PRK06835 DNA replication prote 98.5 1.2E-06 2.6E-11 93.1 12.6 119 310-449 182-305 (329)
284 COG1224 TIP49 DNA helicase TIP 98.5 2.8E-07 6E-12 94.9 7.1 68 628-700 38-105 (450)
285 PRK15115 response regulator Gl 98.5 5.9E-07 1.3E-11 100.9 10.4 182 291-492 135-347 (444)
286 KOG1970 Checkpoint RAD17-RFC c 98.5 5.2E-06 1.1E-10 90.3 16.7 199 278-496 70-308 (634)
287 PRK09862 putative ATP-dependen 98.4 4.3E-07 9.3E-12 101.3 8.3 149 288-460 189-391 (506)
288 TIGR01818 ntrC nitrogen regula 98.4 6.4E-07 1.4E-11 101.2 9.8 183 290-492 134-347 (463)
289 KOG1514 Origin recognition com 98.4 8.6E-06 1.9E-10 91.0 17.9 218 272-517 381-628 (767)
290 smart00763 AAA_PrkA PrkA AAA d 98.4 4.8E-07 1E-11 95.9 7.7 65 630-700 52-127 (361)
291 KOG2228 Origin recognition com 98.4 3E-06 6.4E-11 87.0 13.0 163 290-470 24-219 (408)
292 PF00004 AAA: ATPase family as 98.4 1.1E-07 2.3E-12 87.5 2.2 37 662-701 1-37 (132)
293 PF06068 TIP49: TIP49 C-termin 98.4 5.9E-07 1.3E-11 94.2 7.7 68 628-700 23-90 (398)
294 PRK04195 replication factor C 98.4 5.4E-07 1.2E-11 101.9 7.7 73 631-711 16-88 (482)
295 KOG0745 Putative ATP-dependent 98.4 4E-07 8.6E-12 95.9 5.9 47 660-720 227-273 (564)
296 PF05729 NACHT: NACHT domain 98.4 8E-06 1.7E-10 78.1 14.3 144 314-471 3-164 (166)
297 PRK07276 DNA polymerase III su 98.4 5.8E-06 1.3E-10 86.0 14.0 145 294-466 6-171 (290)
298 PF13191 AAA_16: AAA ATPase do 98.4 8.1E-07 1.8E-11 86.9 7.2 48 291-338 1-51 (185)
299 PRK15455 PrkA family serine pr 98.4 7.1E-07 1.5E-11 98.9 7.3 79 630-718 77-155 (644)
300 PF00931 NB-ARC: NB-ARC domain 98.3 5.1E-06 1.1E-10 87.5 13.6 174 295-496 1-195 (287)
301 PRK07132 DNA polymerase III su 98.3 1E-05 2.3E-10 84.8 15.6 163 297-494 3-176 (299)
302 PRK06921 hypothetical protein; 98.3 1.8E-06 3.8E-11 89.6 9.6 123 310-449 116-240 (266)
303 PLN03025 replication factor C 98.3 7E-07 1.5E-11 95.5 6.8 68 631-707 15-84 (319)
304 KOG0478 DNA replication licens 98.3 7.4E-06 1.6E-10 91.0 13.5 184 291-497 430-657 (804)
305 PRK08939 primosomal protein Dn 98.3 1.8E-06 3.9E-11 91.2 8.2 72 310-394 155-229 (306)
306 TIGR00635 ruvB Holliday juncti 98.3 1.5E-06 3.2E-11 92.5 7.7 62 630-698 5-66 (305)
307 COG2256 MGS1 ATPase related to 98.3 8.5E-07 1.8E-11 93.2 5.3 53 631-695 26-81 (436)
308 CHL00206 ycf2 Ycf2; Provisiona 98.3 4.7E-07 1E-11 110.9 3.8 40 660-702 1631-1670(2281)
309 PHA00729 NTP-binding motif con 98.3 5.3E-06 1.2E-10 82.6 10.7 126 301-468 7-138 (226)
310 PRK10365 transcriptional regul 98.3 1.6E-05 3.5E-10 89.2 15.8 182 291-492 140-352 (441)
311 PRK00080 ruvB Holliday junctio 98.3 2E-06 4.4E-11 92.4 8.0 63 631-700 27-89 (328)
312 PF12774 AAA_6: Hydrolytic ATP 98.2 7.5E-06 1.6E-10 82.7 11.0 132 300-466 23-176 (231)
313 COG3283 TyrR Transcriptional r 98.2 1.3E-05 2.9E-10 82.7 11.8 179 287-490 201-410 (511)
314 PRK13406 bchD magnesium chelat 98.2 4.1E-05 9E-10 87.5 16.8 178 310-520 24-233 (584)
315 TIGR02640 gas_vesic_GvpN gas v 98.2 3.1E-06 6.7E-11 87.9 6.5 47 661-713 23-69 (262)
316 COG0714 MoxR-like ATPases [Gen 98.1 6.3E-06 1.4E-10 88.6 8.5 75 619-710 14-88 (329)
317 PRK05818 DNA polymerase III su 98.1 3.2E-05 6.8E-10 78.6 12.7 123 310-457 6-147 (261)
318 PRK14955 DNA polymerase III su 98.1 5.6E-06 1.2E-10 91.2 7.9 48 630-685 17-64 (397)
319 PRK14962 DNA polymerase III su 98.1 6.2E-06 1.3E-10 92.2 8.0 48 630-685 15-62 (472)
320 PF14516 AAA_35: AAA-like doma 98.1 0.00011 2.4E-09 78.9 17.2 180 293-496 14-232 (331)
321 PF01078 Mg_chelatase: Magnesi 98.1 2.8E-06 6.1E-11 83.1 4.3 44 629-683 3-46 (206)
322 KOG0732 AAA+-type ATPase conta 98.1 1.4E-06 3.1E-11 102.1 2.5 90 612-723 262-353 (1080)
323 COG3854 SpoIIIAA ncharacterize 98.1 2.9E-05 6.3E-10 75.7 10.8 90 302-394 128-230 (308)
324 PF00158 Sigma54_activat: Sigm 98.1 8.8E-06 1.9E-10 78.3 7.4 77 631-714 1-77 (168)
325 PRK13531 regulatory ATPase Rav 98.1 6.5E-06 1.4E-10 90.4 7.2 56 617-683 8-63 (498)
326 cd00009 AAA The AAA+ (ATPases 98.1 7.9E-06 1.7E-10 75.9 6.7 67 633-708 2-68 (151)
327 COG1618 Predicted nucleotide k 98.1 7.6E-05 1.6E-09 69.1 12.8 144 312-472 6-174 (179)
328 PF07726 AAA_3: ATPase family 98.1 2.8E-06 6.1E-11 76.3 3.3 44 661-711 1-45 (131)
329 COG1241 MCM2 Predicted ATPase 98.1 9.5E-06 2.1E-10 92.7 8.4 206 288-517 284-541 (682)
330 TIGR02902 spore_lonB ATP-depen 98.0 1.4E-05 3.1E-10 91.1 9.7 79 630-717 66-155 (531)
331 PRK12402 replication factor C 98.0 5.8E-06 1.3E-10 89.2 6.1 61 631-700 17-79 (337)
332 PRK14960 DNA polymerase III su 98.0 9.3E-06 2E-10 92.0 7.8 47 630-684 16-62 (702)
333 PRK14964 DNA polymerase III su 98.0 1.1E-05 2.3E-10 90.0 8.1 46 630-683 14-59 (491)
334 PRK07940 DNA polymerase III su 98.0 6.8E-06 1.5E-10 89.7 6.3 58 629-686 5-63 (394)
335 KOG0743 AAA+-type ATPase [Post 98.0 6.5E-06 1.4E-10 88.2 5.8 51 660-713 236-286 (457)
336 PRK14963 DNA polymerase III su 98.0 9.2E-06 2E-10 91.5 7.3 46 631-684 16-61 (504)
337 PRK14952 DNA polymerase III su 98.0 9.8E-06 2.1E-10 92.4 7.4 47 630-684 14-60 (584)
338 PRK10733 hflB ATP-dependent me 98.0 6.2E-06 1.3E-10 96.2 5.6 38 661-701 187-224 (644)
339 PRK07133 DNA polymerase III su 98.0 1.3E-05 2.8E-10 92.6 8.1 48 630-685 19-66 (725)
340 PF07728 AAA_5: AAA domain (dy 98.0 8.3E-06 1.8E-10 76.0 5.4 44 661-710 1-44 (139)
341 PRK14958 DNA polymerase III su 98.0 1.2E-05 2.5E-10 90.9 7.6 48 630-685 17-64 (509)
342 PRK14961 DNA polymerase III su 98.0 1.4E-05 3.1E-10 86.9 7.7 49 629-685 16-64 (363)
343 PRK06305 DNA polymerase III su 98.0 1.4E-05 3.1E-10 89.1 7.6 48 630-685 18-65 (451)
344 COG3284 AcoR Transcriptional a 98.0 8.6E-06 1.9E-10 90.7 5.7 175 293-491 316-519 (606)
345 PRK14956 DNA polymerase III su 98.0 6.7E-06 1.4E-10 90.6 4.7 48 630-685 19-66 (484)
346 TIGR02397 dnaX_nterm DNA polym 97.9 2.1E-05 4.6E-10 85.6 8.2 48 630-685 15-62 (355)
347 PRK14954 DNA polymerase III su 97.9 1.7E-05 3.6E-10 91.2 7.6 48 630-685 17-64 (620)
348 PRK14949 DNA polymerase III su 97.9 1.6E-05 3.5E-10 92.8 7.3 49 630-686 17-65 (944)
349 KOG2543 Origin recognition com 97.9 0.00021 4.6E-09 74.9 14.5 150 291-468 7-191 (438)
350 PRK14957 DNA polymerase III su 97.9 1.9E-05 4.2E-10 89.2 7.4 48 630-685 17-64 (546)
351 PF00493 MCM: MCM2/3/5 family 97.9 3.3E-06 7.1E-11 90.6 1.1 198 291-517 25-277 (331)
352 PRK12323 DNA polymerase III su 97.9 1.9E-05 4.1E-10 89.4 6.9 48 630-685 17-64 (700)
353 cd01120 RecA-like_NTPases RecA 97.9 0.00012 2.6E-09 69.5 11.2 113 314-433 2-137 (165)
354 KOG0480 DNA replication licens 97.9 0.00014 3E-09 80.5 12.7 207 288-519 343-594 (764)
355 PRK13342 recombination factor 97.9 1.5E-05 3.3E-10 88.3 5.3 56 631-698 14-72 (413)
356 PRK07003 DNA polymerase III su 97.8 3E-05 6.6E-10 88.9 7.6 48 630-685 17-64 (830)
357 PF07693 KAP_NTPase: KAP famil 97.8 0.00094 2E-08 71.6 18.9 85 381-474 171-267 (325)
358 PRK05563 DNA polymerase III su 97.8 3.2E-05 6.9E-10 88.6 7.8 48 629-684 16-63 (559)
359 TIGR01650 PD_CobS cobaltochela 97.8 2.9E-05 6.3E-10 81.6 6.8 44 661-710 66-109 (327)
360 COG3267 ExeA Type II secretory 97.8 0.00076 1.6E-08 67.5 16.1 179 298-496 39-238 (269)
361 PRK14969 DNA polymerase III su 97.8 3.1E-05 6.7E-10 88.1 7.4 48 630-685 17-64 (527)
362 PRK07994 DNA polymerase III su 97.8 2.8E-05 6.1E-10 89.3 7.0 48 630-685 17-64 (647)
363 PRK06647 DNA polymerase III su 97.8 3.7E-05 8E-10 87.8 7.7 48 630-685 17-64 (563)
364 PRK14965 DNA polymerase III su 97.8 3.6E-05 7.7E-10 88.6 7.6 48 630-685 17-64 (576)
365 KOG1942 DNA helicase, TBP-inte 97.8 2.7E-05 5.8E-10 78.3 5.5 64 629-700 38-104 (456)
366 PRK07764 DNA polymerase III su 97.8 4.5E-05 9.7E-10 90.4 8.2 47 630-684 16-62 (824)
367 PRK12377 putative replication 97.8 2.6E-05 5.7E-10 79.6 5.5 41 661-701 103-143 (248)
368 PF08298 AAA_PrkA: PrkA AAA do 97.8 0.00083 1.8E-08 70.9 16.4 182 290-493 61-346 (358)
369 PRK14700 recombination factor 97.8 7.8E-05 1.7E-09 76.7 8.5 90 417-515 2-93 (300)
370 PRK05896 DNA polymerase III su 97.8 5.4E-05 1.2E-09 85.8 8.0 48 630-685 17-64 (605)
371 PF12780 AAA_8: P-loop contain 97.8 0.00017 3.8E-09 74.5 11.1 157 300-471 21-211 (268)
372 PRK14959 DNA polymerase III su 97.8 4.6E-05 9.9E-10 86.8 7.4 47 631-685 18-64 (624)
373 PRK06645 DNA polymerase III su 97.8 2.4E-05 5.2E-10 87.9 5.1 46 631-684 23-68 (507)
374 PRK14951 DNA polymerase III su 97.8 4.4E-05 9.4E-10 87.5 7.2 47 630-684 17-63 (618)
375 PRK08691 DNA polymerase III su 97.8 5E-05 1.1E-09 87.0 7.6 48 630-685 17-64 (709)
376 PRK00440 rfc replication facto 97.8 4.8E-05 1E-09 81.4 7.1 60 631-699 19-80 (319)
377 PHA02544 44 clamp loader, smal 97.7 3.8E-05 8.2E-10 82.2 5.8 56 631-697 23-78 (316)
378 PRK06581 DNA polymerase III su 97.7 0.00072 1.6E-08 67.4 14.1 149 300-468 3-159 (263)
379 PF03266 NTPase_1: NTPase; In 97.7 2.5E-05 5.3E-10 75.1 3.8 134 313-461 1-162 (168)
380 TIGR01817 nifA Nif-specific re 97.7 8.2E-05 1.8E-09 85.5 8.6 78 629-713 196-273 (534)
381 COG0606 Predicted ATPase with 97.7 2E-05 4.3E-10 85.2 3.1 56 631-704 181-236 (490)
382 PRK14950 DNA polymerase III su 97.7 6.8E-05 1.5E-09 86.7 7.7 47 630-684 17-63 (585)
383 TIGR02903 spore_lon_C ATP-depe 97.7 0.0011 2.3E-08 77.1 17.2 60 630-698 155-221 (615)
384 TIGR03420 DnaA_homol_Hda DnaA 97.7 5.7E-05 1.2E-09 76.5 5.7 41 661-701 40-80 (226)
385 PRK14970 DNA polymerase III su 97.7 9.2E-05 2E-09 81.0 7.7 48 630-685 18-65 (367)
386 PF01695 IstB_IS21: IstB-like 97.7 2.1E-05 4.6E-10 76.4 2.2 42 661-702 49-90 (178)
387 PRK06893 DNA replication initi 97.6 6.5E-05 1.4E-09 76.3 5.7 36 661-696 41-76 (229)
388 smart00382 AAA ATPases associa 97.6 5.1E-05 1.1E-09 69.7 4.5 41 661-701 4-44 (148)
389 KOG3347 Predicted nucleotide k 97.6 3.4E-05 7.3E-10 70.2 3.1 46 661-720 9-54 (176)
390 KOG0991 Replication factor C, 97.6 6.1E-05 1.3E-09 73.6 5.0 60 631-699 29-90 (333)
391 PF10923 DUF2791: P-loop Domai 97.6 0.0039 8.4E-08 68.0 19.4 113 382-499 239-377 (416)
392 PRK07952 DNA replication prote 97.6 6.9E-05 1.5E-09 76.4 5.7 41 661-701 101-141 (244)
393 PRK08181 transposase; Validate 97.6 5.6E-05 1.2E-09 78.2 4.8 42 661-702 108-149 (269)
394 PRK14953 DNA polymerase III su 97.6 0.00012 2.5E-09 82.4 7.7 47 630-684 17-63 (486)
395 COG1123 ATPase components of v 97.6 3E-05 6.4E-10 86.1 2.8 36 661-697 319-354 (539)
396 TIGR00764 lon_rel lon-related 97.6 6.1E-05 1.3E-09 87.0 5.5 53 623-686 12-64 (608)
397 PRK13407 bchI magnesium chelat 97.6 5.9E-05 1.3E-09 80.4 4.9 45 630-683 9-53 (334)
398 PRK08116 hypothetical protein; 97.6 7E-05 1.5E-09 77.8 5.4 41 661-701 116-156 (268)
399 PRK08939 primosomal protein Dn 97.6 7.5E-05 1.6E-09 78.9 5.6 42 661-702 158-199 (306)
400 PRK13341 recombination factor 97.6 7E-05 1.5E-09 87.8 5.8 54 631-696 30-86 (725)
401 KOG1968 Replication factor C, 97.6 7.3E-05 1.6E-09 88.3 5.9 193 277-497 307-525 (871)
402 PRK09111 DNA polymerase III su 97.6 6.1E-05 1.3E-09 86.5 5.1 47 630-684 25-71 (598)
403 PLN03210 Resistant to P. syrin 97.6 0.00071 1.5E-08 84.8 14.9 66 271-336 162-232 (1153)
404 PRK08903 DnaA regulatory inact 97.6 0.00011 2.5E-09 74.5 6.5 40 661-700 44-83 (227)
405 KOG2028 ATPase related to the 97.6 5E-05 1.1E-09 78.6 3.5 44 631-683 140-186 (554)
406 PRK08451 DNA polymerase III su 97.6 0.00015 3.2E-09 81.7 7.6 47 631-685 16-62 (535)
407 KOG2170 ATPase of the AAA+ sup 97.6 0.00012 2.5E-09 74.5 6.0 66 620-687 73-138 (344)
408 KOG2170 ATPase of the AAA+ sup 97.6 0.00018 4E-09 73.1 7.3 114 291-420 83-203 (344)
409 PRK14971 DNA polymerase III su 97.6 0.00016 3.5E-09 83.5 8.0 71 630-708 18-110 (614)
410 PF13207 AAA_17: AAA domain; P 97.6 7.5E-05 1.6E-09 67.5 4.2 32 662-698 2-33 (121)
411 PRK10536 hypothetical protein; 97.5 0.00081 1.8E-08 68.3 11.9 45 289-335 54-98 (262)
412 PRK07471 DNA polymerase III su 97.5 0.0001 2.3E-09 79.8 5.9 49 630-686 20-68 (365)
413 PHA02244 ATPase-like protein 97.5 0.00024 5.3E-09 75.6 8.4 57 627-694 94-151 (383)
414 KOG0742 AAA+-type ATPase [Post 97.5 0.00013 2.7E-09 76.8 5.8 45 651-698 376-420 (630)
415 TIGR02928 orc1/cdc6 family rep 97.5 0.00022 4.8E-09 77.9 8.1 68 629-701 15-88 (365)
416 PRK06851 hypothetical protein; 97.5 0.0035 7.5E-08 67.5 16.8 32 661-692 216-247 (367)
417 PRK06835 DNA replication prote 97.5 0.00013 2.9E-09 77.7 5.8 42 661-702 185-226 (329)
418 PF05673 DUF815: Protein of un 97.5 0.00028 6.1E-09 70.7 7.7 74 631-709 29-102 (249)
419 COG1484 DnaC DNA replication p 97.5 0.00012 2.5E-09 75.4 5.2 41 661-701 107-147 (254)
420 PRK14948 DNA polymerase III su 97.5 0.00011 2.4E-09 84.9 5.5 48 630-685 17-64 (620)
421 cd01124 KaiC KaiC is a circadi 97.5 0.00072 1.6E-08 66.2 10.6 24 314-337 2-25 (187)
422 COG1373 Predicted ATPase (AAA+ 97.5 0.0005 1.1E-08 75.6 10.3 137 297-465 24-162 (398)
423 TIGR02688 conserved hypothetic 97.5 0.0003 6.6E-09 75.9 8.2 99 295-423 192-292 (449)
424 KOG0482 DNA replication licens 97.5 0.00046 1E-08 74.5 9.1 204 291-520 343-592 (721)
425 PRK06526 transposase; Provisio 97.5 5.7E-05 1.2E-09 77.7 2.3 45 661-705 100-144 (254)
426 KOG0744 AAA+-type ATPase [Post 97.4 0.0001 2.2E-09 75.4 3.9 23 661-683 179-201 (423)
427 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.0013 2.8E-08 71.1 12.5 131 309-457 60-201 (362)
428 PRK07399 DNA polymerase III su 97.4 0.00017 3.7E-09 76.6 5.7 51 629-687 4-54 (314)
429 PHA02774 E1; Provisional 97.4 0.00074 1.6E-08 75.6 10.5 120 298-457 420-555 (613)
430 PRK04841 transcriptional regul 97.4 0.0025 5.5E-08 78.3 16.4 170 290-496 14-218 (903)
431 PTZ00202 tuzin; Provisional 97.4 0.002 4.4E-08 69.6 13.2 49 287-335 259-310 (550)
432 PRK13765 ATP-dependent proteas 97.4 0.00016 3.5E-09 83.3 5.1 64 626-700 28-92 (637)
433 TIGR02974 phageshock_pspF psp 97.4 0.00047 1E-08 73.9 8.2 76 631-713 1-76 (329)
434 COG4650 RtcR Sigma54-dependent 97.4 0.00029 6.2E-09 71.0 6.0 153 294-464 188-366 (531)
435 PRK09376 rho transcription ter 97.4 0.0016 3.5E-08 69.9 11.9 29 309-337 167-195 (416)
436 PF13177 DNA_pol3_delta2: DNA 97.4 0.0003 6.5E-09 67.3 5.9 48 633-688 1-48 (162)
437 TIGR02237 recomb_radB DNA repa 97.4 0.00091 2E-08 66.9 9.7 112 311-430 12-147 (209)
438 PRK00411 cdc6 cell division co 97.4 0.00047 1E-08 76.2 8.3 68 630-702 31-100 (394)
439 PF00910 RNA_helicase: RNA hel 97.3 0.00084 1.8E-08 59.4 8.2 24 314-337 1-24 (107)
440 PF06309 Torsin: Torsin; Inte 97.3 0.00057 1.2E-08 61.4 7.0 48 291-338 26-80 (127)
441 COG0470 HolB ATPase involved i 97.3 0.00037 8.1E-09 74.7 7.1 50 631-687 3-52 (325)
442 COG4619 ABC-type uncharacteriz 97.3 0.00077 1.7E-08 62.9 8.0 46 381-434 150-195 (223)
443 PRK05022 anaerobic nitric oxid 97.3 0.00055 1.2E-08 78.1 8.6 77 629-712 187-263 (509)
444 KOG1808 AAA ATPase containing 97.3 0.0022 4.8E-08 80.2 13.8 133 309-466 438-595 (1856)
445 PRK04296 thymidine kinase; Pro 97.3 0.0014 3.1E-08 64.5 9.8 24 314-337 5-28 (190)
446 CHL00081 chlI Mg-protoporyphyr 97.3 0.00024 5.2E-09 76.0 4.5 46 630-684 18-63 (350)
447 PRK05564 DNA polymerase III su 97.3 0.00032 6.9E-09 74.9 5.5 48 630-685 5-52 (313)
448 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00021 4.6E-09 69.8 3.7 34 662-700 2-35 (183)
449 PRK15455 PrkA family serine pr 97.3 0.00027 5.8E-09 78.9 4.8 50 288-337 74-129 (644)
450 PRK05642 DNA replication initi 97.3 0.0004 8.7E-09 70.8 5.8 40 661-700 47-86 (234)
451 COG4088 Predicted nucleotide k 97.3 0.002 4.4E-08 62.2 10.0 25 314-338 4-28 (261)
452 TIGR02858 spore_III_AA stage I 97.2 0.0013 2.8E-08 68.1 9.5 83 309-391 109-203 (270)
453 PRK09112 DNA polymerase III su 97.2 0.00035 7.6E-09 75.3 5.4 48 630-685 24-71 (351)
454 PF00437 T2SE: Type II/IV secr 97.2 0.0015 3.2E-08 68.3 10.0 117 288-431 102-230 (270)
455 PRK08727 hypothetical protein; 97.2 0.00052 1.1E-08 69.9 6.4 41 661-701 43-83 (233)
456 PHA00729 NTP-binding motif con 97.2 0.00021 4.6E-09 71.2 3.2 41 661-701 19-72 (226)
457 PRK11608 pspF phage shock prot 97.2 0.00099 2.1E-08 71.4 8.4 78 629-713 6-83 (326)
458 PRK08118 topology modulation p 97.2 0.00029 6.4E-09 67.8 3.9 31 661-694 3-33 (167)
459 cd01128 rho_factor Transcripti 97.2 0.0026 5.6E-08 65.2 11.0 29 309-337 14-42 (249)
460 PRK09183 transposase/IS protei 97.2 0.00025 5.5E-09 73.3 3.5 41 661-701 104-144 (259)
461 PRK10820 DNA-binding transcrip 97.2 0.00099 2.1E-08 76.1 8.6 78 629-713 204-281 (520)
462 PRK14532 adenylate kinase; Pro 97.2 0.00028 6.1E-09 69.3 3.6 36 661-701 2-37 (188)
463 PF13207 AAA_17: AAA domain; P 97.2 0.00037 8E-09 63.0 4.1 22 314-335 2-23 (121)
464 PRK06067 flagellar accessory p 97.2 0.0032 6.8E-08 64.2 11.4 80 309-395 23-133 (234)
465 cd01121 Sms Sms (bacterial rad 97.2 0.00076 1.6E-08 73.2 7.2 112 311-429 82-206 (372)
466 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0018 4E-08 67.1 9.6 91 296-394 66-161 (264)
467 PRK11388 DNA-binding transcrip 97.2 0.001 2.2E-08 78.3 8.7 76 629-711 325-400 (638)
468 TIGR02329 propionate_PrpR prop 97.2 0.001 2.3E-08 75.5 8.4 77 630-713 213-289 (526)
469 PRK00131 aroK shikimate kinase 97.2 0.00041 8.9E-09 67.0 4.5 30 661-693 6-35 (175)
470 PF13671 AAA_33: AAA domain; P 97.2 0.00027 5.9E-09 65.9 3.1 33 662-699 2-34 (143)
471 COG2204 AtoC Response regulato 97.2 0.0097 2.1E-07 65.6 15.5 79 628-713 140-218 (464)
472 PF13604 AAA_30: AAA domain; P 97.2 0.0044 9.6E-08 61.3 11.8 39 298-337 6-44 (196)
473 PRK10923 glnG nitrogen regulat 97.1 0.0012 2.5E-08 74.9 8.7 80 631-717 140-220 (469)
474 cd00464 SK Shikimate kinase (S 97.1 0.00042 9.2E-09 65.5 4.2 31 661-694 1-31 (154)
475 PRK06921 hypothetical protein; 97.1 0.00046 1E-08 71.6 4.7 40 661-700 119-159 (266)
476 PRK00625 shikimate kinase; Pro 97.1 0.00049 1.1E-08 66.5 4.3 36 661-701 2-37 (173)
477 PRK15424 propionate catabolism 97.1 0.0014 2.9E-08 74.5 8.4 77 630-713 220-304 (538)
478 PF12774 AAA_6: Hydrolytic ATP 97.1 0.00087 1.9E-08 67.8 6.3 45 661-708 34-78 (231)
479 PRK08058 DNA polymerase III su 97.1 0.00054 1.2E-08 73.5 4.9 49 630-686 6-55 (329)
480 PRK09361 radB DNA repair and r 97.1 0.0019 4.1E-08 65.4 8.6 39 310-355 22-60 (225)
481 PRK13695 putative NTPase; Prov 97.1 0.0071 1.5E-07 58.6 12.1 25 313-337 2-26 (174)
482 PF13671 AAA_33: AAA domain; P 97.1 0.0034 7.5E-08 58.4 9.5 22 314-335 2-23 (143)
483 TIGR02030 BchI-ChlI magnesium 97.0 0.00062 1.3E-08 72.8 4.9 46 629-683 4-49 (337)
484 PRK08118 topology modulation p 97.0 0.0013 2.8E-08 63.3 6.6 23 313-335 3-25 (167)
485 PRK14531 adenylate kinase; Pro 97.0 0.00045 9.9E-09 67.6 3.6 36 661-701 4-39 (183)
486 PRK13947 shikimate kinase; Pro 97.0 0.00062 1.3E-08 65.7 4.4 31 661-694 3-33 (171)
487 PRK08084 DNA replication initi 97.0 0.00094 2E-08 68.1 5.8 37 661-697 47-83 (235)
488 PRK03839 putative kinase; Prov 97.0 0.00057 1.2E-08 66.6 4.0 43 661-708 2-44 (180)
489 PRK11823 DNA repair protein Ra 97.0 0.0013 2.9E-08 73.4 7.4 112 311-429 80-204 (446)
490 PRK06696 uridine kinase; Valid 97.0 0.0019 4E-08 65.4 7.9 60 636-701 5-64 (223)
491 KOG0477 DNA replication licens 97.0 0.0021 4.6E-08 71.1 8.5 45 291-335 450-506 (854)
492 TIGR00362 DnaA chromosomal rep 97.0 0.00047 1E-08 76.4 3.7 41 661-701 138-180 (405)
493 PF13191 AAA_16: AAA ATPase do 97.0 0.00065 1.4E-08 66.2 4.2 74 631-710 2-81 (185)
494 PRK08533 flagellar accessory p 97.0 0.0048 1E-07 62.7 10.6 112 309-432 22-162 (230)
495 PF00910 RNA_helicase: RNA hel 97.0 0.00048 1E-08 61.0 2.9 23 662-684 1-23 (107)
496 PF14532 Sigma54_activ_2: Sigm 97.0 0.00059 1.3E-08 63.5 3.6 61 632-699 1-61 (138)
497 TIGR02442 Cob-chelat-sub cobal 97.0 0.001 2.2E-08 77.7 6.5 45 630-683 5-49 (633)
498 TIGR01618 phage_P_loop phage n 97.0 0.0012 2.6E-08 66.0 6.1 23 310-332 11-33 (220)
499 PRK15429 formate hydrogenlyase 97.0 0.0017 3.7E-08 77.0 8.4 75 630-711 377-451 (686)
500 cd02021 GntK Gluconate kinase 97.0 0.0011 2.3E-08 62.5 5.3 36 662-702 2-37 (150)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-105 Score=898.83 Aligned_cols=581 Identities=48% Similarity=0.729 Sum_probs=507.2
Q ss_pred HhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhhccCCCC
Q 004878 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPF 163 (725)
Q Consensus 84 ~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (725)
+||++++++|..|+.+|++++|++|++||||++|+.++.+..+|..+|++++.++.++...+++.+.. .
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~-----------~ 69 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEFIDKLPKV-----------L 69 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchHHHHHHcCCCHHHHHHHHHHHHhccCCC-----------C
Confidence 59999999999999999999999999999999999999888999999999999999999999987652 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhhhccCCC
Q 004878 164 SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE 243 (725)
Q Consensus 164 ~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~ 243 (725)
+ . +.+|+.++++++.|+.+|...++.||+++|||+|++.++++.+.++|..++++...+.. +...+.+.....
T Consensus 70 ~--~-~~~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~--- 142 (786)
T COG0542 70 G--S-PYLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEE-LIEELRGGNEVD--- 142 (786)
T ss_pred C--C-CCCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHH-HHHHHhcccccC---
Confidence 1 2 77899999999999999999999999999999999999999999999999999998844 444443321110
Q ss_pred CccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCCh
Q 004878 244 PSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323 (725)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~G 323 (725)
+ .........|++|+.++++.++.+++||+|||++++++++++|+|+.+||++|+|+||||
T Consensus 143 ----------~---------~~~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVG 203 (786)
T COG0542 143 ----------S---------KNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVG 203 (786)
T ss_pred ----------C---------cccccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCC
Confidence 0 001123478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC
Q 004878 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403 (725)
Q Consensus 324 KT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~ 403 (725)
||++++.||+++..++||..+.+++++.+|++.+++|++++|+|+++++.+++++++.+++||||||||+++++|+.
T Consensus 204 KTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~--- 280 (786)
T COG0542 204 KTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT--- 280 (786)
T ss_pred HHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc---
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999876
Q ss_pred CCCC-cHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCC
Q 004878 404 NKGT-GLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482 (725)
Q Consensus 404 ~~~~-~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~ 482 (725)
++ ..|+.|+|++.|.+|++.|||+||..+|+++++.|++|.|||+.|.+.+|+.++...||+++.++|+.+|++.++
T Consensus 281 --~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~ 358 (786)
T COG0542 281 --EGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRIT 358 (786)
T ss_pred --cccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceec
Confidence 23 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhcccccc
Q 004878 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYD 562 (725)
Q Consensus 483 ~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 562 (725)
++++.+++.++.||+++|++||||||++|+||++.++... .|.+ .+++..++.++..+.+.....++ +.
T Consensus 359 D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~---------l~~~~~~~~~l~~e~~~~~~e~~-~~ 427 (786)
T COG0542 359 DEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEE---------LDELERELAQLEIEKEALEREQD-EK 427 (786)
T ss_pred HHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcc---------hhHHHHHHHHHHHHHHHHhhhhh-HH
Confidence 9999999999999999999999999999999999999877 5553 23333344443333333322222 00
Q ss_pred hhhhccCCcchHHHhccCCCCCCCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHH
Q 004878 563 DVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAIS 642 (725)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~ 642 (725)
..........+.. ............ .|+.++|+++++.|||||+.++..++...+.++++.|.++|+||++|+..|+
T Consensus 428 ~k~~~~~~~~~~~--~~~~~~~~~~~~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs 504 (786)
T COG0542 428 EKKLIDEIIKLKE--GRIPELEKELEA-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVS 504 (786)
T ss_pred HHHHHHHHHHHhh--hhhhhHHHHHhh-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHH
Confidence 0000000000000 000000000011 2999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 643 RAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 643 ~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
++++++++|+++|+||+++|||.||+|||||+|||+||+.|||++.+|||||||||||||+||||||+|||||||+|+
T Consensus 505 ~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG 582 (786)
T COG0542 505 DAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG 582 (786)
T ss_pred HHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
No 2
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=6.7e-87 Score=788.23 Aligned_cols=593 Identities=48% Similarity=0.763 Sum_probs=511.7
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhhc
Q 004878 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAA 158 (725)
Q Consensus 81 ~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (725)
||++||++++++|..|+.+|++++|++|+|||||+|||.++++ .++|+.+|++++.++.++...+++.+.
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~-------- 72 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTG-------- 72 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCC--------
Confidence 7899999999999999999999999999999999999998876 789999999999999999988876422
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhhh
Q 004878 159 QGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELA 238 (725)
Q Consensus 159 ~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~ 238 (725)
.....++||+.++++|+.|..+|..+++.+|+++|||+||++++++.+.++|..+|++.+.++..+...+.+...
T Consensus 73 -----~~~~~~~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~l~~~~e 147 (821)
T CHL00095 73 -----FVAVEIPFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEIIE 147 (821)
T ss_pred -----CCccccccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHhccccc
Confidence 122458899999999999999999999999999999999999888888999999999999988876654421100
Q ss_pred ccCCCCccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEc
Q 004878 239 KEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318 (725)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~G 318 (725)
.. ... +. .....+.|++|+.+|++.++++++++++||++++++++++|+++.++|++|+|
T Consensus 148 ~~------~~~-------~~-------~~~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G 207 (821)
T CHL00095 148 AI------LGA-------EQ-------SRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIG 207 (821)
T ss_pred cc------ccc-------cc-------ccccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEEC
Confidence 00 000 00 00134689999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCC
Q 004878 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398 (725)
Q Consensus 319 p~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~ 398 (725)
|||||||++|+++|..+..+++|..+.+.+++.+|+..+++|.+++|+|+++++.+++++...+++||||||+|.+++.+
T Consensus 208 ~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g 287 (821)
T CHL00095 208 EPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAG 287 (821)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999999877
Q ss_pred CCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccC
Q 004878 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHN 478 (725)
Q Consensus 399 ~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~ 478 (725)
.. .+..++.++|++.+.++++.+|++||.++|+++++.+++|.+||+.|.+++|+.++...|++.+...|+.+++
T Consensus 288 ~~-----~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~ 362 (821)
T CHL00095 288 AA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHN 362 (821)
T ss_pred CC-----CCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 54 3456889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhcc
Q 004878 479 CKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558 (725)
Q Consensus 479 ~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 558 (725)
+.++++++..++.++.+|+++|++|+++++++|+||+++++.....+.+ .+.++.++..+....+......
T Consensus 363 v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 433 (821)
T CHL00095 363 LSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPA---------ARELDKELREILKDKDEAIREQ 433 (821)
T ss_pred CCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchh---------HHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999998876555432 2344555555555554444444
Q ss_pred cccchhhhccCCcc----hHHHhcc-CCCCCCCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeC
Q 004878 559 LKYDDVVASMGDTS----EIVVESS-LPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIG 633 (725)
Q Consensus 559 ~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~G 633 (725)
+++....+...... +...... ............|+.+||..+++.|||||+.++..++..++.++++.|.++|+|
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~G 513 (821)
T CHL00095 434 DFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIG 513 (821)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcC
Confidence 44333222211100 0000000 000001122367999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCc
Q 004878 634 QDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPG 713 (725)
Q Consensus 634 q~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppg 713 (725)
|++|++.|..++.+.+.|+.+|+||+++|||+||||||||++|++||+.+||++.+|+++||+||+++|++++|||+|||
T Consensus 514 Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~g 593 (821)
T CHL00095 514 QDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPG 593 (821)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 004878 714 YVGVGEY 720 (725)
Q Consensus 714 yvG~~e~ 720 (725)
||||+|.
T Consensus 594 yvg~~~~ 600 (821)
T CHL00095 594 YVGYNEG 600 (821)
T ss_pred ccCcCcc
Confidence 9999985
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=2.4e-85 Score=769.65 Aligned_cols=606 Identities=37% Similarity=0.553 Sum_probs=489.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhhccCCC
Q 004878 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKP 162 (725)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (725)
+|++++++|..|+++|++++|++|+|||||+|||.++++ ..+|..+|++++.++.++...+...+.
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~~~Lr~~le~~l~~~p~------------ 68 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPR------------ 68 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCC------------
Confidence 589999999999999999999999999999999998765 688999999999999999998876543
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-HHHhcCCCccCHHHHHHHhhhcCCc--chhHHHHhh-cCCHHHHHHHHHHhhhhhhh
Q 004878 163 FSSAAKMPFSISTKRVFEAAVE-YSRSRGYNFIAPEHIALGLFTVDDG--SAGRVLKRL-GVDVNHLAAVAVSRLQGELA 238 (725)
Q Consensus 163 ~~~~~~~~~s~~~~~vl~~A~~-~a~~~g~~~V~~~hlllall~~~~~--~a~~iL~~~-gv~~~~l~~~~~~~~~~~~~ 238 (725)
+....+++|+.++++|+.|.. .+..+|+.+|+++|||+||++++++ .+..++..+ |++.+.+.+.+.....+...
T Consensus 69 -~~~~~~~~S~~l~~vL~~A~~~~a~~~g~~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (852)
T TIGR03345 69 -GNTRTPVFSPHLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSAE 147 (852)
T ss_pred -CCCCCCCcCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHHhcCCcc
Confidence 111357899999999999997 4667999999999999999987765 566788887 99998887766542121100
Q ss_pred ccCCCCccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEc
Q 004878 239 KEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318 (725)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~G 318 (725)
. ...... . ......+ .....+.|++|+.||++.++++.++++|||++++++++++|+++.++|++|+|
T Consensus 148 ~--~~~~~~-~--~~~~~~~-------~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG 215 (852)
T TIGR03345 148 A--SAAAAD-A--GPAAAAA-------GAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTG 215 (852)
T ss_pred c--cccccc-c--ccccccc-------cccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEEC
Confidence 0 000000 0 0000000 00134689999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEccchhhhhC
Q 004878 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGS 397 (725)
Q Consensus 319 p~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~~ 397 (725)
|||||||++++.+|+.+..+.+|..+.+.+++.++++.+.+|..++|+|+++++.+++++.. ..++||||||+|.++++
T Consensus 216 ~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~ 295 (852)
T TIGR03345 216 EAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGA 295 (852)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999975 46899999999999987
Q ss_pred CCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhcc
Q 004878 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (725)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~ 477 (725)
|+. .+..++.|+|++.+++|.+.|||+||.++|++++++|++|.|||+.|.|++|+.+++..||+.+...|+.+|
T Consensus 296 g~~-----~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~ 370 (852)
T TIGR03345 296 GGQ-----AGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHH 370 (852)
T ss_pred CCc-----cccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcC
Confidence 654 345678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhh------------hhhcCCCC------h-
Q 004878 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQ------------TCILSKPP------D- 538 (725)
Q Consensus 478 ~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~------------~~~l~~~~------~- 538 (725)
++.++++++..++.++.+|++++++||+|+|++|+||++.++.....+.+.. ...+.++. .
T Consensus 371 ~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (852)
T TIGR03345 371 GVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDE 450 (852)
T ss_pred CCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHH
Confidence 9999999999999999999999999999999999999999887554443211 01111110 0
Q ss_pred ---hHHHHHHHHHHhHHHHHhcccccch--hh-----------hc--cCCcc-----hHHHhcc--CCCCCCCCCCCccC
Q 004878 539 ---DYWQEIRTVQAMHEVVQGSRLKYDD--VV-----------AS--MGDTS-----EIVVESS--LPSASDDDEPAVVG 593 (725)
Q Consensus 539 ---~~~~~l~~~~~~~~~~~~~~~~~~~--~~-----------~~--~~~~~-----~~~~~~~--~~~~~~~~~~~~v~ 593 (725)
.+..++..+..........+.-+.. .. .. ..... +...+.. ............|+
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 530 (852)
T TIGR03345 451 RLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVD 530 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceec
Confidence 0001111111111100000000000 00 00 00000 0000000 00011123346799
Q ss_pred HHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHH
Q 004878 594 PDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673 (725)
Q Consensus 594 ~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT 673 (725)
.+||+.++++|||||+.++..++..++.++++.|.++|+||++|++.|...+++++.|+.+|+||+++|||+||||||||
T Consensus 531 ~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT 610 (852)
T TIGR03345 531 AQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKT 610 (852)
T ss_pred HHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 674 ELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 674 ~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
++|++||+.+|+++.+|+++|||||+++|++++|||+|||||||++.
T Consensus 611 ~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~ 657 (852)
T TIGR03345 611 ETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG 657 (852)
T ss_pred HHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999874
No 4
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=3.4e-83 Score=748.96 Aligned_cols=541 Identities=44% Similarity=0.699 Sum_probs=481.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCCchhhccCCCC
Q 004878 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHS-TNNQDTDDAAAQGKPF 163 (725)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~~~~l~~~gv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 163 (725)
||++++++|..|+++|++++|.+|++||||+|||.++++.++|+.+|++.+.+++++...++. .+.. ..
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~~~gid~~~l~~~l~~~l~~~~p~~----------~~ 70 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILEECGGDVEALRKDLEDYLENNLPSI----------TE 70 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC----------CC
Confidence 689999999999999999999999999999999999887899999999999999999998873 3220 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhhhccCCC
Q 004878 164 SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE 243 (725)
Q Consensus 164 ~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~ 243 (725)
.....+++|+.++++|+.|+.+|..+|+.+|+++|||+||++++++.+.++|..+|++.+.+...+.......... .
T Consensus 71 ~~~~~~~~S~~lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~~~~~~---~ 147 (731)
T TIGR02639 71 ENEADPEQTVGVQRVLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIPKDDGK---N 147 (731)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhccccccc---c
Confidence 1124588999999999999999999999999999999999998888888999999999998877664311100000 0
Q ss_pred CccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCCh
Q 004878 244 PSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323 (725)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~G 323 (725)
.... . .... ......+.|++|+.||+++++++++|+++||++++++++++|+++.++|+||+||||||
T Consensus 148 ~~~~-~------~~~~-----~~~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~G 215 (731)
T TIGR02639 148 RDAE-E------AGKE-----EAKKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVG 215 (731)
T ss_pred cccc-c------cccc-----ccccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCC
Confidence 0000 0 0000 00113468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC
Q 004878 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403 (725)
Q Consensus 324 KT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~ 403 (725)
||++++++|+.+..+++|..+.+++++.+|+..+.++.++.|+++++++.+++++....++||||||+|.+++++...
T Consensus 216 KT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-- 293 (731)
T TIGR02639 216 KTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS-- 293 (731)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--
Confidence 999999999999999999999999999999999999999999999999999999987788999999999999876532
Q ss_pred CCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCH
Q 004878 404 NKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483 (725)
Q Consensus 404 ~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~ 483 (725)
++..+++++|++.++++.+.+|++||..+|.++++.|++|.|||+.|.|++|+.+++.+||+.+..+|+.+|++.+++
T Consensus 294 --~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~ 371 (731)
T TIGR02639 294 --GGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSD 371 (731)
T ss_pred --CccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCH
Confidence 335678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhcccccch
Q 004878 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDD 563 (725)
Q Consensus 484 ~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 563 (725)
+++..++.++.+|+.++++|+++++++|++|++.++.....
T Consensus 372 ~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~--------------------------------------- 412 (731)
T TIGR02639 372 EALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAK--------------------------------------- 412 (731)
T ss_pred HHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccc---------------------------------------
Confidence 99999999999999999999999999999998776531110
Q ss_pred hhhccCCcchHHHhccCCCCCCCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHH
Q 004878 564 VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISR 643 (725)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~ 643 (725)
....|+.+||..+++.|+|||+..+++++..++.++++.|.++|+||++|++.|..
T Consensus 413 ------------------------~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~ 468 (731)
T TIGR02639 413 ------------------------KKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVS 468 (731)
T ss_pred ------------------------cccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHH
Confidence 12469999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 644 AVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 644 ~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
++.+.+.|+.+|+||.+++||+||||||||++|++||+.+ +.+++++|||||+++|++++|||+|||||||++.
T Consensus 469 ~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~ 542 (731)
T TIGR02639 469 SIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQG 542 (731)
T ss_pred HHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhcCCCCCcccchh
Confidence 9999999999999999999999999999999999999998 4679999999999999999999999999999875
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.6e-82 Score=750.76 Aligned_cols=596 Identities=44% Similarity=0.684 Sum_probs=494.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhhccCCC
Q 004878 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKP 162 (725)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (725)
||++++++|..|+.+|++++|++|+|||||+||+.++++ .++|..+|+|++.+++++...+++.+..
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~~l~~~~~~----------- 69 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKV----------- 69 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHhcccccC-----------
Confidence 799999999999999999999999999999999999876 7899999999999999999998875431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhhhccCC
Q 004878 163 FSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGR 242 (725)
Q Consensus 163 ~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~ 242 (725)
.+....++||+.++++|+.|+.+|..+|+.+|+++|||+||++++++ ++++|..+|++.+.+++.+.....+. .
T Consensus 70 ~~~~~~~~~S~~~~~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~-a~~iL~~~gi~~~~l~~~l~~~~~~~-~---- 143 (852)
T TIGR03346 70 SGPGGQVYLSPELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGT-LGKLLKEAGATADALEAAINAVRGGQ-K---- 143 (852)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCcc-HHHHHHHcCCCHHHHHHHHHhhccCc-c----
Confidence 11124688999999999999999999999999999999999998776 67899999999998887664321100 0
Q ss_pred CCccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCC
Q 004878 243 EPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322 (725)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~ 322 (725)
.. ... .....+.|++|+.||+++++++.++++|||++++++++++|+++.++|++|+|||||
T Consensus 144 ~~-----------~~~-------~~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGv 205 (852)
T TIGR03346 144 VT-----------SAN-------AEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGV 205 (852)
T ss_pred cc-----------ccc-------cccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCC
Confidence 00 000 011346899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCC
Q 004878 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVG 401 (725)
Q Consensus 323 GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~ 401 (725)
|||+++++++..+..+.+|..+.+.+++.+|++.+.++.+++|+++.+++.++..+... +++||||||+|.++++|..
T Consensus 206 GKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~- 284 (852)
T TIGR03346 206 GKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA- 284 (852)
T ss_pred CHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC-
Confidence 99999999999999999999999999999999999999999999999999999998654 5899999999999877654
Q ss_pred CCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCC
Q 004878 402 RGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (725)
Q Consensus 402 ~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i 481 (725)
.+..++.++|++.++++.+.||++||.++|++++.+|+++.+||+.|.+++|+.+++..||+.+..+|+.+|++.+
T Consensus 285 ----~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~ 360 (852)
T TIGR03346 285 ----EGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRI 360 (852)
T ss_pred ----cchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCC
Confidence 3456889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhh-----h-------hhcCCCCh--------hHH
Q 004878 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQ-----T-------CILSKPPD--------DYW 541 (725)
Q Consensus 482 ~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~-----~-------~~l~~~~~--------~~~ 541 (725)
+++++..++.++.+|+.+|++|++|++++|+||+++++.....|.+.. + ..+.++.+ ++.
T Consensus 361 ~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (852)
T TIGR03346 361 TDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLE 440 (852)
T ss_pred CHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999887555443311 1 11111111 011
Q ss_pred HHHHHHHHhHHHHHhccc-------------------------------ccchhhhccCC-----cchHHHhccCC-CCC
Q 004878 542 QEIRTVQAMHEVVQGSRL-------------------------------KYDDVVASMGD-----TSEIVVESSLP-SAS 584 (725)
Q Consensus 542 ~~l~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~-----~~~~~~~~~~~-~~~ 584 (725)
.++.++....+.....+. +.....+.... ..+........ ...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (852)
T TIGR03346 441 KELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETK 520 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccc
Confidence 111111111111100000 00000000000 00000000000 001
Q ss_pred CCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEE
Q 004878 585 DDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664 (725)
Q Consensus 585 ~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl 664 (725)
.......|+.+||..+++.|||||+.++..++..++.++++.|.++|+||++|++.|...+.+.+.|+.+|+||.+.+||
T Consensus 521 ~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf 600 (852)
T TIGR03346 521 PRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLF 600 (852)
T ss_pred cccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEE
Confidence 12344679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 665 CGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 665 ~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
+||||||||++|++||+.+|+++.+|+++|||||++++++++|||+|||||||++.
T Consensus 601 ~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~ 656 (852)
T TIGR03346 601 LGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG 656 (852)
T ss_pred EcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc
Confidence 99999999999999999999999999999999999999999999999999999873
No 6
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=5.7e-81 Score=735.42 Aligned_cols=601 Identities=40% Similarity=0.621 Sum_probs=496.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhh
Q 004878 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (725)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
||+++||+.++++|..|+.+|++++|.+|++||||++|+.++.+ ..+|..+|+|...++..+...+++.+..
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~------ 74 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQV------ 74 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHHhhCCCC------
Confidence 46889999999999999999999999999999999999998876 6789999999999999999998875431
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhh
Q 004878 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (725)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~ 237 (725)
.+....+++|+.++++|+.|+.+|..+|+.+|+++|||++++++++ ..+.+|..+|++.+.+.+.+.....+..
T Consensus 75 -----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 148 (857)
T PRK10865 75 -----EGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRG-TLADILKAAGATTANITQAIEQMRGGES 148 (857)
T ss_pred -----CCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCcc-hHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 1112457899999999999999999999999999999999998754 3456899999999998876543211110
Q ss_pred hccCCCCccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEE
Q 004878 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (725)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~ 317 (725)
. .. .. + ....+.|++|+.||+++++++++|++|||++++++++++|+++.++|++|+
T Consensus 149 ~-------~~---------~~------~-~~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~ 205 (857)
T PRK10865 149 V-------ND---------QG------A-EDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI 205 (857)
T ss_pred c-------cc---------cc------c-ccchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEE
Confidence 0 00 00 0 013468999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEccchhhhh
Q 004878 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIG 396 (725)
Q Consensus 318 Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~ 396 (725)
||||||||+++++++..+..+.+|..+.+.+++.++++.+++|.+++|+++.+++.+++++.. .+++||||||+|.+++
T Consensus 206 G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~ 285 (857)
T PRK10865 206 GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG 285 (857)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999998754 4689999999999998
Q ss_pred CCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhc
Q 004878 397 SGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH 476 (725)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~ 476 (725)
++.. ++..+++++|++.+++|.+.||++||.++|++++++|+++.+||+.|.+..|+.+++..||+.+.++|+.+
T Consensus 286 ~~~~-----~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 286 AGKA-----DGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred CCCC-----ccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccC
Confidence 7754 45678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhh------------hhhcCCCCh------
Q 004878 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQ------------TCILSKPPD------ 538 (725)
Q Consensus 477 ~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~------------~~~l~~~~~------ 538 (725)
|++.++++++..++.++.+|+.++++|++|++++|.+++..+++...+++..+ ...+..+.+
T Consensus 361 ~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~ 440 (857)
T PRK10865 361 HHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKR 440 (857)
T ss_pred CCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999998887666554321 011111110
Q ss_pred --hHHHHHHHHHHhHHHHHhccc-------------------------------ccchhhhccCCcc-hH-HHh--ccCC
Q 004878 539 --DYWQEIRTVQAMHEVVQGSRL-------------------------------KYDDVVASMGDTS-EI-VVE--SSLP 581 (725)
Q Consensus 539 --~~~~~l~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~-~~-~~~--~~~~ 581 (725)
...+++.+++.........+. +.....++..... .. ... ....
T Consensus 441 ~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (857)
T PRK10865 441 LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLE 520 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhh
Confidence 011111111111110000000 0000000000000 00 000 0000
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 004878 582 SASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661 (725)
Q Consensus 582 ~~~~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~ 661 (725)
..........|+.+||+.+++.|||||+.++..++..++.++++.|.++|+||+.|++.|...+.+.+.|+.+|++|++.
T Consensus 521 ~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~ 600 (857)
T PRK10865 521 GKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGS 600 (857)
T ss_pred ccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCce
Confidence 01112233679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 662 iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
+||+||||||||++|++||+.+|+++..||++||++|.+++.+++|||+|||||||++.
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~ 659 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG 659 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh
Confidence 99999999999999999999999988899999999999999999999999999999874
No 7
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-79 Score=702.61 Aligned_cols=545 Identities=39% Similarity=0.621 Sum_probs=476.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhhccCCCCC
Q 004878 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFS 164 (725)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (725)
+|+.+.++|..|..+|+.++|.+|++||||++||.+++...+|..+|++.+.++..+...++...... + ...
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~ 73 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVL-----P---ASE 73 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHHcCCCHHHHHHHHHHHHhhcCCcC-----C---CCC
Confidence 68899999999999999999999999999999998776678999999999999999999887421100 0 001
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhhhccCCCC
Q 004878 165 SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP 244 (725)
Q Consensus 165 ~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~ 244 (725)
....++++..++++|+.|+.+|..+++.+|+++|||+||++++++.+.++|..+|++...+...+... ...... .+
T Consensus 74 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~-~~- 149 (758)
T PRK11034 74 EERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG--TRKDEP-SQ- 149 (758)
T ss_pred CcCCcCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHhC--Cccccc-cc-
Confidence 11346789999999999999999999999999999999999888888999999999988776542211 000000 00
Q ss_pred ccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChH
Q 004878 245 SLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGK 324 (725)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GK 324 (725)
. +.....+ .++. .......|++|+.||++.++.+++++++||++++++++++|+++.++|+||+|||||||
T Consensus 150 -~-~~~~~~~-~~~~------~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGK 220 (758)
T PRK11034 150 -S-SDPGSQP-NSEE------QAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGK 220 (758)
T ss_pred -c-ccccccc-cccc------cccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCH
Confidence 0 0000000 0000 00123699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC
Q 004878 325 TAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN 404 (725)
Q Consensus 325 T~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~ 404 (725)
|++|+++++.+...++|..+.++.++.+++..+..|.+++|+++.+++.+++.+...++.||||||||.+++.+...
T Consensus 221 T~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~--- 297 (758)
T PRK11034 221 TAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--- 297 (758)
T ss_pred HHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---
Confidence 99999999999999999999999999999999999999999999999999999988788999999999999877531
Q ss_pred CCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHH
Q 004878 405 KGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484 (725)
Q Consensus 405 ~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~ 484 (725)
++..++.++|+++++++++.||++||.++|++++..|++|.|||+.|.|++|+.+++..||+.+..+|+.+|++.++++
T Consensus 298 -~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~ 376 (758)
T PRK11034 298 -GGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK 376 (758)
T ss_pred -CcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhcccccchh
Q 004878 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDV 564 (725)
Q Consensus 485 ~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 564 (725)
++..++.++.+|++++++|+++++++|+||++.++.....
T Consensus 377 al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~---------------------------------------- 416 (758)
T PRK11034 377 AVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSK---------------------------------------- 416 (758)
T ss_pred HHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccc----------------------------------------
Confidence 9999999999999999999999999999999765521000
Q ss_pred hhccCCcchHHHhccCCCCCCCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHH
Q 004878 565 VASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRA 644 (725)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~ 644 (725)
....|+.+||..+++.|+|||+..+..++...+.++++.|.++|+||++|++.|..+
T Consensus 417 -----------------------~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~ 473 (758)
T PRK11034 417 -----------------------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEA 473 (758)
T ss_pred -----------------------cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHH
Confidence 013588899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 645 VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 645 v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
+...+.|+.++++|+++|||+||||||||++|++||+.+ +.+|+++||+||++.|++++|||+|||||||++.
T Consensus 474 i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~ 546 (758)
T PRK11034 474 IKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG 546 (758)
T ss_pred HHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCCcEEeechhhcccccHHHHcCCCCCccccccc
Confidence 999999999999999999999999999999999999998 5689999999999999999999999999999864
No 8
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-78 Score=685.55 Aligned_cols=599 Identities=39% Similarity=0.547 Sum_probs=503.1
Q ss_pred CccchHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCC-CCHHHHHHHHHHHHhcCCCCCC
Q 004878 77 PISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESG-ITIDKAREAVVSIWHSTNNQDT 153 (725)
Q Consensus 77 ~~~~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~g-v~~~~~~~~~~~~~~~~~~~~~ 153 (725)
+.+.++..||++|.++|..|+.+|+++||++++|+|++.+||.++++ .+++...+ ++..++..++...+.+.|.
T Consensus 4 ~~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt--- 80 (898)
T KOG1051|consen 4 GVYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPT--- 80 (898)
T ss_pred cccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCcccHHHHHHHHHHHHHhccC---
Confidence 34577889999999999999999999999999999999999999998 77888888 9999999999999999876
Q ss_pred chhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 154 DDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
..+++...+++..+++++..+.+.+..+++++|.+||+.|.+.-.+|+.+.++++++|++..+++..+.+..
T Consensus 81 --------~~~p~~sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~~li~silDdp~vsrv~reag~~s~~vK~~ve~~~ 152 (898)
T KOG1051|consen 81 --------SYGPPVSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPV 152 (898)
T ss_pred --------CCCCccchHhHHHHHHHHHHHHhcchhhccchhhHhHHhhheeeecCchHHHHHHHhcCChHHHHHHHHhhc
Confidence 234455677888888888888888889999999999997777777888999999999999999999888765
Q ss_pred hhhhhccCCCCccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCccccc-HHHHHHHHHHHhcCCCC
Q 004878 234 QGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGR-ETEIQRIIQILCRRTKN 312 (725)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~-~~~i~~l~~~L~~~~~~ 312 (725)
... +.++. +| ......|.+|+.++++.++.+.+++++|+ ++++++++++|.++.++
T Consensus 153 g~~----~~~~~------------------~~-~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~ 209 (898)
T KOG1051|consen 153 GQF----RSPSR------------------GP-LWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKN 209 (898)
T ss_pred ccc----CCCCc------------------CC-ccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCC
Confidence 211 11110 01 11468899999999999999999999999 99999999999999999
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH-hcCCeEEEEccc
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ-KSGDVILFIDEV 391 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~-~~~~~IL~IDEi 391 (725)
|++|+|+||+|||.++..+++.+..+++|..+.++.++.+|+..+.+|.+++|+++.+++.+..++. ..+++||||||+
T Consensus 210 NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigel 289 (898)
T KOG1051|consen 210 NPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGEL 289 (898)
T ss_pred CceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecce
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 558899999999
Q ss_pred hhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHH
Q 004878 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE 471 (725)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~ 471 (725)
|++++.+.. .+..++.|.|++.+.++.++|||+||.++|+++++.+|+|.+||+.+.++.|+.++...||+.+..
T Consensus 290 h~lvg~g~~-----~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 290 HWLVGSGSN-----YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred eeeecCCCc-----chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhh
Confidence 999988765 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhH
Q 004878 472 KYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551 (725)
Q Consensus 472 ~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 551 (725)
+|+.+|++.++++++..++.++.+|++.+++|+.+++++++||+..++.....|+.++...-... ....++..++...
T Consensus 365 ~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~--~~~~e~~~L~kk~ 442 (898)
T KOG1051|consen 365 RYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDI--KLQDEISELQKKW 442 (898)
T ss_pred hhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhh--hhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999988877775432211100 0111222222222
Q ss_pred HHHHhccc-ccchhhhc----------cCCcchH-HHhc--cCC---------CCC-C------------------CCCC
Q 004878 552 EVVQGSRL-KYDDVVAS----------MGDTSEI-VVES--SLP---------SAS-D------------------DDEP 589 (725)
Q Consensus 552 ~~~~~~~~-~~~~~~~~----------~~~~~~~-~~~~--~~~---------~~~-~------------------~~~~ 589 (725)
+.....+. ++...... ....... .... ... ... . ....
T Consensus 443 d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~ 522 (898)
T KOG1051|consen 443 NQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSND 522 (898)
T ss_pred hhhhccccccccccccccccccchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhccc
Confidence 11000000 00000000 0000000 0000 000 000 0 0001
Q ss_pred CccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCC
Q 004878 590 AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669 (725)
Q Consensus 590 ~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpG 669 (725)
...++.+|..+++.|+|+|+......+..++..|.+.|+++|+||++|+.+|+.+|++++.|+++| +|.+||||.||+|
T Consensus 523 ~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdg 601 (898)
T KOG1051|consen 523 NQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDG 601 (898)
T ss_pred ccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCc
Confidence 111677999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 670 VGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 670 tGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
+|||.|||+||+.+||++.+||+||||||++ |||+||+|||||||.+.
T Consensus 602 vGKt~lAkaLA~~~Fgse~~~IriDmse~~e---vskligsp~gyvG~e~g 649 (898)
T KOG1051|consen 602 VGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEG 649 (898)
T ss_pred hhHHHHHHHHHHHHcCCccceEEechhhhhh---hhhccCCCcccccchhH
Confidence 9999999999999999999999999999999 99999999999999985
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-43 Score=372.88 Aligned_cols=372 Identities=21% Similarity=0.297 Sum_probs=261.9
Q ss_pred CCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 288 LIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
.|.++=|.+..+..|.+++.. ..++++||+||||||||.||+++|.++ +..++.+...
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isAp 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAP 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecch
Confidence 578899999998888876533 566889999999999999999999999 7888999999
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc--------CCCeEEE
Q 004878 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--------RGELQCI 427 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--------~~~v~vI 427 (725)
++++| +.|+.+++++.+|+++....|+|+||||||.+.++....+ ++....+...|+..|. ...|+||
T Consensus 258 eivSG--vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq--reMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 258 EIVSG--VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ--REMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred hhhcc--cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH--HHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 99965 4789999999999999999999999999999977654321 1223345555555443 2458999
Q ss_pred EeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCch
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
|+||.++ .+||+|+| || +.|.+..|+..+|.+||+.+++.+.... +-....+++++.+|++ .
T Consensus 334 gATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-----~~d~~qlA~lTPGfVG-----A 398 (802)
T KOG0733|consen 334 GATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-----DFDFKQLAKLTPGFVG-----A 398 (802)
T ss_pred ecCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-----CcCHHHHHhcCCCccc-----h
Confidence 9999998 89999999 99 5899999999999999999998552221 2235678899998876 6
Q ss_pred hHHHHHHHHHHHHHHhhhhchhh-hhhhhcCCC--ChhHHHHHHHHHHhHHHHHhcccccchhhhccCCcchHHHh--cc
Q 004878 505 KAIDLVDEAGSRAHIELFKRKKE-QQTCILSKP--PDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVE--SS 579 (725)
Q Consensus 505 ~ai~ll~~a~~~~~~~~~~~~~~-~~~~~l~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 579 (725)
+...++.+|+..+--+....... ......... ..+....-..+. .....+... +.++-.+... ..
T Consensus 399 DL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~-------~~~~~~~~~---~ld~v~~~~i~~~~ 468 (802)
T KOG0733|consen 399 DLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIK-------ITSNAERPL---ELDRVVQDAILNNP 468 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhh-------cCCcccccc---cHHHHHHHHHHhCC
Confidence 66777777665543322221110 000000000 000000000000 000000000 0000000000 00
Q ss_pred CCCCCCCCCCCccCHHHHHHHHHhhh------C-CChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCC
Q 004878 580 LPSASDDDEPAVVGPDDIAAVASLWS------G-IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGL 652 (725)
Q Consensus 580 ~~~~~~~~~~~~v~~~di~~v~~~~t------g-ip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl 652 (725)
..-.........|..+|+..++...- | +.+.+++|++++.+.+++.+|...|. ..|.++-.+.+.|+
T Consensus 469 d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~------~PiK~pd~~k~lGi 542 (802)
T KOG0733|consen 469 DPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAIL------APIKRPDLFKALGI 542 (802)
T ss_pred CCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHh------hhccCHHHHHHhCC
Confidence 00011123345689999999887442 3 24559999999999999999987664 34667778888999
Q ss_pred CCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 653 KDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 653 ~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
..| +|||||||||||||+||||+|++- +.|||+|+|||+++| |||++|.+||
T Consensus 543 ~~P----sGvLL~GPPGCGKTLlAKAVANEa---g~NFisVKGPELlNk------------YVGESErAVR 594 (802)
T KOG0733|consen 543 DAP----SGVLLCGPPGCGKTLLAKAVANEA---GANFISVKGPELLNK------------YVGESERAVR 594 (802)
T ss_pred CCC----CceEEeCCCCccHHHHHHHHhhhc---cCceEeecCHHHHHH------------HhhhHHHHHH
Confidence 988 499999999999999999999996 889999999999999 9999999998
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-36 Score=325.83 Aligned_cols=295 Identities=25% Similarity=0.328 Sum_probs=231.5
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcC-CeEEE
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG-DVILF 387 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~-~~IL~ 387 (725)
+.+.++|+|||||+|||.+++++|++. +..++.+++..++ .++.|+.+..++..|+++.... |+++|
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli--~k~~gEte~~LR~~f~~a~k~~~psii~ 283 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELI--SKFPGETESNLRKAFAEALKFQVPSIIF 283 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHH--HhcccchHHHHHHHHHHHhccCCCeeEe
Confidence 566889999999999999999999998 7889999999888 4678899999999999999988 99999
Q ss_pred EccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEEeccchhhhhhhcccHHHHc-cc-ceEEecCCCHHH
Q 004878 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALAR-RF-QPVLISEPSQED 461 (725)
Q Consensus 388 IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~at~~~~~~~~~~ld~~L~~-Rf-~~I~i~~Ps~ee 461 (725)
|||+|.++++.....+ ....+...|+.++. .++++||++||.+. .+|++++| || +.+.|..|+..+
T Consensus 284 IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRRgRfd~ev~IgiP~~~~ 355 (693)
T KOG0730|consen 284 IDELDALCPKREGADD---VESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSDG 355 (693)
T ss_pred HHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhcCCCcceeeecCCCchh
Confidence 9999999986543211 13344445554443 57899999999987 89999998 99 589999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHH
Q 004878 462 AVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYW 541 (725)
Q Consensus 462 ~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 541 (725)
|.+|++.+.+.+ +.. ++..+..++..+.+|+. .++..++.++...+..+.
T Consensus 356 RldIl~~l~k~~----~~~-~~~~l~~iA~~thGyvG-----aDL~~l~~ea~~~~~r~~-------------------- 405 (693)
T KOG0730|consen 356 RLDILRVLTKKM----NLL-SDVDLEDIAVSTHGYVG-----ADLAALCREASLQATRRT-------------------- 405 (693)
T ss_pred HHHHHHHHHHhc----CCc-chhhHHHHHHHccchhH-----HHHHHHHHHHHHHHhhhh--------------------
Confidence 999999988854 333 57888999999999976 566667666655432210
Q ss_pred HHHHHHHHhHHHHHhcccccchhhhccCCcchHHHhccCCCCCCCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHH
Q 004878 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLV 621 (725)
Q Consensus 542 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~ 621 (725)
+...+.. ...+.+..+.+.+ ++..+++|++++++.
T Consensus 406 --~~~~~~A--------------------------------------~~~i~psa~Re~~-----ve~p~v~W~dIGGlE 440 (693)
T KOG0730|consen 406 --LEIFQEA--------------------------------------LMGIRPSALREIL-----VEMPNVSWDDIGGLE 440 (693)
T ss_pred --HHHHHHH--------------------------------------HhcCCchhhhhee-----ccCCCCChhhccCHH
Confidence 0000000 0122233333322 556689999999999
Q ss_pred hHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 622 GLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 622 ~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
++++.|++.|.|. +..+..+.+.|++.|+ |+|||||||||||++|||||++. ..||+.|+++|++.|
T Consensus 441 ~lK~elq~~V~~p------~~~pe~F~r~Gi~ppk----GVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 441 ELKRELQQAVEWP------LKHPEKFARFGISPPK----GVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSK 507 (693)
T ss_pred HHHHHHHHHHhhh------hhchHHHHHhcCCCCc----eEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHH
Confidence 9999888666544 4555677888998885 99999999999999999999997 889999999999999
Q ss_pred hhHhHhhcCCCccccccccccc
Q 004878 702 HTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 702 ~~vs~liG~ppgyvG~~e~~~~ 723 (725)
|||.||.++|
T Consensus 508 ------------~vGeSEr~ir 517 (693)
T KOG0730|consen 508 ------------YVGESERAIR 517 (693)
T ss_pred ------------hcCchHHHHH
Confidence 9999999987
No 11
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-32 Score=293.95 Aligned_cols=324 Identities=19% Similarity=0.267 Sum_probs=222.7
Q ss_pred cccccHHHHHHHHHHHhcCCC---------CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc
Q 004878 291 PVIGRETEIQRIIQILCRRTK---------NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~~~~---------~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~ 361 (725)
...+++..+..+.+++..+.. ..+||+|+||||||++++++|.++ +.+++++||.++.+..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~s 471 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAES 471 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhcc
Confidence 445677777778888765322 347999999999999999999999 9999999999998643
Q ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCeEEEEeccchh
Q 004878 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCIASTTQDE 434 (725)
Q Consensus 362 ~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~vI~at~~~~ 434 (725)
.+..+.++..++..++...|+|||+-++|.+.-.... +....++..+...++ .+.+++|++++..+
T Consensus 472 --~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-----ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~ 544 (953)
T KOG0736|consen 472 --ASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-----GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE 544 (953)
T ss_pred --cchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-----chhHHHHHHHHHHHhcccccCCCCceEEEEeccccc
Confidence 5567888999999999999999999999998522111 223345555555554 35688999998887
Q ss_pred hhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHhhhhcccCCCchhHHHHHHH
Q 004878 435 HRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDKAIDLVDE 512 (725)
Q Consensus 435 ~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~-~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~ 512 (725)
.+.+.+++.| +.|.++.|+.+||.+||+.+.... .+. +..++.++..+.++.. .+.-.++..
T Consensus 545 -----~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~------~~n~~v~~k~~a~~t~gfs~-----~~L~~l~~~ 608 (953)
T KOG0736|consen 545 -----DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHL------PLNQDVNLKQLARKTSGFSF-----GDLEALVAH 608 (953)
T ss_pred -----cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcc------ccchHHHHHHHHHhcCCCCH-----HHHHHHhcC
Confidence 7889999977 689999999999999999887733 233 3335556666655532 222222221
Q ss_pred HHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhcccccchhhhccCCcchHHHhccCCCCCCCCCCCcc
Q 004878 513 AGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVV 592 (725)
Q Consensus 513 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 592 (725)
....+..+ ++ .. .. ... +++.+ .....+....+
T Consensus 609 ~s~~~~~~-----------------------i~----~~--~l-~g~------~~~~~-----------~~~~~~~~~~l 641 (953)
T KOG0736|consen 609 SSLAAKTR-----------------------IK----NK--GL-AGG------LQEED-----------EGELCAAGFLL 641 (953)
T ss_pred chHHHHHH-----------------------HH----hh--cc-ccc------chhcc-----------cccccccccee
Confidence 10000000 00 00 00 000 00000 01112233667
Q ss_pred CHHHHHHHHHhh-------hCCC-hhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHH---hhcCCCCCCCCCee
Q 004878 593 GPDDIAAVASLW-------SGIP-VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKR---SRVGLKDPNRPTAA 661 (725)
Q Consensus 593 ~~~di~~v~~~~-------tgip-~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~---~~~gl~~p~rp~~~ 661 (725)
+.+|+...+++. .|.| +.+++|+|+++|.+++..+. +.|.-+++. ...|++++ +|
T Consensus 642 ~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIl----------dTIqlPL~hpeLfssglrkR----SG 707 (953)
T KOG0736|consen 642 TEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEIL----------DTIQLPLKHPELFSSGLRKR----SG 707 (953)
T ss_pred cHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHH----------HHhcCcccChhhhhcccccc----ce
Confidence 888888887732 3443 45889998777777666333 333333322 33455544 69
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 662 iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
+|||||||||||++|||+|.++ ..+|++|+|||++|+ |||.||++||
T Consensus 708 ILLYGPPGTGKTLlAKAVATEc---sL~FlSVKGPELLNM------------YVGqSE~NVR 754 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELLNM------------YVGQSEENVR 754 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhc---eeeEEeecCHHHHHH------------HhcchHHHHH
Confidence 9999999999999999999999 899999999999999 9999999998
No 12
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-30 Score=282.81 Aligned_cols=305 Identities=19% Similarity=0.264 Sum_probs=218.1
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEE
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFI 388 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~I 388 (725)
....|+||.||+|+|||.|++++++++... ..+++..++|+.+.. .....+...+..+|.++....|+|+++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~------~~~hv~~v~Cs~l~~--~~~e~iQk~l~~vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKD------LIAHVEIVSCSTLDG--SSLEKIQKFLNNVFSEALWYAPSIIVL 500 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccc------cceEEEEEechhccc--hhHHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 456789999999999999999999998532 267888889987752 224567777888898898999999999
Q ss_pred ccchhhhhCCCCCCCCCCCc-HHHH----HHHhhhhcCCC-eEEEEeccchhhhhhhcccHHHHc--ccc-eEEecCCCH
Q 004878 389 DEVHTLIGSGTVGRGNKGTG-LDIS----NLLKPSLGRGE-LQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQ 459 (725)
Q Consensus 389 DEid~l~~~~~~~~~~~~~~-~~~~----~~L~~~l~~~~-v~vI~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ 459 (725)
||+|.|++......+..+.. ..+. +.++.++.++. +.+|++.+... .++|.|.+ +|+ ++.++.|..
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcch
Confidence 99999987332211111111 1111 22234444444 58888777654 77788777 675 789999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChh
Q 004878 460 EDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD 539 (725)
Q Consensus 460 ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 539 (725)
.+|.+||+.++++- ...+..+.++.+...+++|.. .+..-+++.|...+.+.....
T Consensus 576 ~~R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~~-----~DL~ifVeRai~~a~leris~--------------- 631 (952)
T KOG0735|consen 576 TRRKEILTTIFSKN----LSDITMDDLDFLSVKTEGYLA-----TDLVIFVERAIHEAFLERISN--------------- 631 (952)
T ss_pred hHHHHHHHHHHHhh----hhhhhhHHHHHHHHhcCCccc-----hhHHHHHHHHHHHHHHHHhcc---------------
Confidence 99999999988743 245667778888888888754 566677777776554221110
Q ss_pred HHHHHHHHHHhHHHHHhcccccchhhhccCCcchHHHhccCCCCCCCCCCCccCHHHHHHHHHhhhCCChhh--------
Q 004878 540 YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ-------- 611 (725)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~v~~~~tgip~~~-------- 611 (725)
.++.++.+++.+.+..++......
T Consensus 632 ------------------------------------------------~~klltke~f~ksL~~F~P~aLR~ik~~k~tg 663 (952)
T KOG0735|consen 632 ------------------------------------------------GPKLLTKELFEKSLKDFVPLALRGIKLVKSTG 663 (952)
T ss_pred ------------------------------------------------CcccchHHHHHHHHHhcChHHhhhccccccCC
Confidence 113567777777776665332222
Q ss_pred ccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceE
Q 004878 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSML 691 (725)
Q Consensus 612 l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lI 691 (725)
+.|.|.+++.+.++.|. +.|.++.++.....+.|-|-..|+|||||||||||.||.++|..+ +.+||
T Consensus 664 i~w~digg~~~~k~~l~----------~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fi 730 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLE----------EVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFI 730 (952)
T ss_pred CCceecccHHHHHHHHH----------HHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEE
Confidence 44555555555555443 233444566666667777777899999999999999999999997 88999
Q ss_pred EecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 692 RLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 692 rid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
+++|||+++| |+|-+|++||
T Consensus 731 svKGPElL~K------------yIGaSEq~vR 750 (952)
T KOG0735|consen 731 SVKGPELLSK------------YIGASEQNVR 750 (952)
T ss_pred EecCHHHHHH------------HhcccHHHHH
Confidence 9999999999 9999999998
No 13
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=7e-30 Score=300.77 Aligned_cols=327 Identities=22% Similarity=0.320 Sum_probs=221.5
Q ss_pred hcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.-+|+++.|.+++++++.+++.. ..+.++||+||||||||++++++++++ +..++.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i 243 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISI 243 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Confidence 34678999999999998887532 345789999999999999999999988 6677888
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh----cCCCeEEEE
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIA 428 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~ 428 (725)
++..+. ..+.|+.+..++.+|+.+....+.||||||+|.+++......+ +....+.+.|..++ .++.+++|+
T Consensus 244 ~~~~i~--~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~--~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 244 NGPEIM--SKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG--EVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred ecHHHh--cccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc--hHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 887776 3466788889999999998888999999999999866433211 12234555565555 357789999
Q ss_pred eccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHhhhhcccCCCch
Q 004878 429 STTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKF-TLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i-~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
+||..+ .+|+++++ || ..|.++.|+.++|.+||+.... ++.+ .+..++.++..+.+|.. .
T Consensus 320 atn~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~------~~~l~~d~~l~~la~~t~G~~g-----a 383 (733)
T TIGR01243 320 ATNRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR------NMPLAEDVDLDKLAEVTHGFVG-----A 383 (733)
T ss_pred ecCChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc------CCCCccccCHHHHHHhCCCCCH-----H
Confidence 999886 78999988 88 4799999999999999985544 2233 23446778888877754 3
Q ss_pred hHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhcccccchhhhccCCcchHHHhccCCCCC
Q 004878 505 KAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSAS 584 (725)
Q Consensus 505 ~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (725)
+...++.+++..+-.+...... ..... ..+ ..
T Consensus 384 dl~~l~~~a~~~al~r~~~~~~-------------------------------~~~~~-~~i----------------~~ 415 (733)
T TIGR01243 384 DLAALAKEAAMAALRRFIREGK-------------------------------INFEA-EEI----------------PA 415 (733)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-------------------------------ccccc-ccc----------------cc
Confidence 4444555444432111000000 00000 000 00
Q ss_pred CCCCCCccCHHHHHHHHHhhhC-------CChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHH--------Hhh
Q 004878 585 DDDEPAVVGPDDIAAVASLWSG-------IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVK--------RSR 649 (725)
Q Consensus 585 ~~~~~~~v~~~di~~v~~~~tg-------ip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~--------~~~ 649 (725)
.......++.+|+..++..... +....+.|++ |+|++++++.+...+. +.+
T Consensus 416 ~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~d--------------i~g~~~~k~~l~~~v~~~~~~~~~~~~ 481 (733)
T TIGR01243 416 EVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSD--------------IGGLEEVKQELREAVEWPLKHPEIFEK 481 (733)
T ss_pred hhcccccccHHHHHHHHhhccccccchhhccccccchhh--------------cccHHHHHHHHHHHHHhhhhCHHHHHh
Confidence 0011134555666555543221 1112344444 5555555555544442 344
Q ss_pred cCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 650 VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 650 ~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
.|+..| .++|||||||||||++|++||+++ +.+|+.++++|++++ |||++|+.+|
T Consensus 482 ~g~~~~----~giLL~GppGtGKT~lakalA~e~---~~~fi~v~~~~l~~~------------~vGese~~i~ 536 (733)
T TIGR01243 482 MGIRPP----KGVLLFGPPGTGKTLLAKAVATES---GANFIAVRGPEILSK------------WVGESEKAIR 536 (733)
T ss_pred cCCCCC----ceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHhhc------------ccCcHHHHHH
Confidence 566655 389999999999999999999997 789999999999887 9999998776
No 14
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.7e-23 Score=215.92 Aligned_cols=307 Identities=22% Similarity=0.253 Sum_probs=200.9
Q ss_pred HHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh--
Q 004878 303 IQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-- 380 (725)
Q Consensus 303 ~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~-- 380 (725)
++.|...+-.++|||||||||||.+|+.+...+.. .-|.. ++..++. .+|.|+.|+.++.+|..+.+
T Consensus 248 ie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNA-rePKI--------VNGPeIL--~KYVGeSE~NvR~LFaDAEeE~ 316 (744)
T KOG0741|consen 248 IEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNA-REPKI--------VNGPEIL--NKYVGESEENVRKLFADAEEEQ 316 (744)
T ss_pred HHHcCccceeeEEEECCCCCChhHHHHHHHHHhcC-CCCcc--------cCcHHHH--HHhhcccHHHHHHHHHhHHHHH
Confidence 33444566778999999999999999999999853 22322 2344444 47899999999999988864
Q ss_pred ------cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEEeccchhhhhhhcccHHHHc--c
Q 004878 381 ------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALAR--R 448 (725)
Q Consensus 381 ------~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~at~~~~~~~~~~ld~~L~~--R 448 (725)
++=.|+++||||.+|..+++..|+.+.+..+.|.|+.-+. -+++.|||.||..+ .+|.+|.| |
T Consensus 317 r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPGR 391 (744)
T KOG0741|consen 317 RRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPGR 391 (744)
T ss_pred HhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh-----hHHHHhcCCCc
Confidence 2335888999999998777666655666677777776554 26799999999988 78999999 9
Q ss_pred cc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhh
Q 004878 449 FQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKE 527 (725)
Q Consensus 449 f~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~ 527 (725)
|. .++|..|++.-|.+||+-...+...+ +.--++-.++.++.++..|.. .....++..|.+.+-.+......
T Consensus 392 lEVqmEIsLPDE~gRlQIl~IHT~rMre~-~~l~~dVdl~elA~lTKNfSG-----AEleglVksA~S~A~nR~vk~~~- 464 (744)
T KOG0741|consen 392 LEVQMEISLPDEKGRLQILKIHTKRMREN-NKLSADVDLKELAALTKNFSG-----AELEGLVKSAQSFAMNRHVKAGG- 464 (744)
T ss_pred eEEEEEEeCCCccCceEEEEhhhhhhhhc-CCCCCCcCHHHHHHHhcCCch-----hHHHHHHHHHHHHHHHhhhccCc-
Confidence 95 79999999999999998877766533 322344457788888888764 44455555555443221100000
Q ss_pred hhhhhcCCCChhHHHHHHHHHHhHHHHHhcccccchhhhccCCcchHHHhccCCCCCCCCCCCccCHHHHHHHHHhh---
Q 004878 528 QQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW--- 604 (725)
Q Consensus 528 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~v~~~~--- 604 (725)
.............|+.+|+..++...
T Consensus 465 ---------------------------------------------------~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 465 ---------------------------------------------------KVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred ---------------------------------------------------ceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 00001112233567777777777633
Q ss_pred hCCChhhccHHHHHHHHhHHHHhcC-ceeCcHHHHHHHHHHHHHhhcCCCCC-CCCCeeEEEEcCCCCcHHHHHHHHHHH
Q 004878 605 SGIPVQQITADERMLLVGLEEQLKK-RVIGQDEAVAAISRAVKRSRVGLKDP-NRPTAAMLFCGPTGVGKTELAKSLAAC 682 (725)
Q Consensus 605 tgip~~~l~~~~~~~l~~l~~~L~~-~v~Gq~~a~~~i~~~v~~~~~gl~~p-~rp~~~iLl~GPpGtGKT~lAkaLA~~ 682 (725)
+|+. ..+ ++..+.. .+.|-..+-.-+.+.-.+.+ ..+.+ +.|..++||.||||+|||.||-.+|..
T Consensus 494 FG~s-----ee~------l~~~~~~Gmi~~g~~v~~il~~G~llv~-qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~ 561 (744)
T KOG0741|consen 494 FGIS-----EED------LERFVMNGMINWGPPVTRILDDGKLLVQ-QVKNSERSPLVSVLLEGPPGSGKTALAAKIALS 561 (744)
T ss_pred cCCC-----HHH------HHHHHhCCceeecccHHHHHhhHHHHHH-HhhccccCcceEEEEecCCCCChHHHHHHHHhh
Confidence 2333 111 2222222 23333333222222222211 12223 335569999999999999999999986
Q ss_pred hcCCCCceEEecccCC
Q 004878 683 YFGSESSMLRLDMSEY 698 (725)
Q Consensus 683 lfg~~~~lIrid~sE~ 698 (725)
|+.+||++--||=
T Consensus 562 ---S~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 562 ---SDFPFVKIISPED 574 (744)
T ss_pred ---cCCCeEEEeChHH
Confidence 6899999876654
No 15
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.1e-22 Score=202.07 Aligned_cols=200 Identities=22% Similarity=0.297 Sum_probs=164.6
Q ss_pred CCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
+++++=|.+++++.+.+.+.- ..+.++|||||||||||.||+++|++. ++.++.+..
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvg 218 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVG 218 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEecc
Confidence 567888999999999887533 567889999999999999999999987 888999988
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCeEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCI 427 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~vI 427 (725)
+.++ .+|.|+=...++++|+.++.+.|+|+||||||.+-.+..... .++..+++..+.++|+ ++++.||
T Consensus 219 SElV--qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~--t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 219 SELV--QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG--TSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred HHHH--HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC--CCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 8888 578888888899999999999999999999999966543322 2467889999988886 5789999
Q ss_pred EeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHhhhhcccCCCc
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLP 503 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~-~l~~l~~~s~~~i~~r~lp 503 (725)
++||..+ .+||+|.| || ..|+|+.|+.+.|.+||+-...+. .+.++ .++.++..+.++..
T Consensus 295 ~ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM------~l~~dvd~e~la~~~~g~sG----- 358 (406)
T COG1222 295 MATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM------NLADDVDLELLARLTEGFSG----- 358 (406)
T ss_pred EecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc------cCccCcCHHHHHHhcCCCch-----
Confidence 9999998 89999999 99 589999999999999999888755 33332 35677777776643
Q ss_pred hhHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRA 517 (725)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (725)
.+.-.++.+|+..+
T Consensus 359 AdlkaictEAGm~A 372 (406)
T COG1222 359 ADLKAICTEAGMFA 372 (406)
T ss_pred HHHHHHHHHHhHHH
Confidence 55666777776654
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.88 E-value=5.2e-22 Score=205.26 Aligned_cols=198 Identities=25% Similarity=0.340 Sum_probs=157.6
Q ss_pred hhhhhhhhhcCCCcccccHHHH---HHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 278 VDLTARASEELIDPVIGRETEI---QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i---~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
.+|..++||.+++++|||++.+ .-|...+......+++|||||||||||+|+.||+.. +..+..++
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~s- 80 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALS- 80 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEec-
Confidence 4899999999999999999887 346667777888999999999999999999999988 66677664
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEec
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at 430 (725)
...+|. +.++.+++++++ +...||||||||++ ....++.|++.+++|.+++||+|
T Consensus 81 -Av~~gv-------kdlr~i~e~a~~~~~~gr~tiLflDEIHRf-------------nK~QQD~lLp~vE~G~iilIGAT 139 (436)
T COG2256 81 -AVTSGV-------KDLREIIEEARKNRLLGRRTILFLDEIHRF-------------NKAQQDALLPHVENGTIILIGAT 139 (436)
T ss_pred -cccccH-------HHHHHHHHHHHHHHhcCCceEEEEehhhhc-------------ChhhhhhhhhhhcCCeEEEEecc
Confidence 333333 337778877754 24689999999999 33567899999999999999999
Q ss_pred cchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhhhcccCCCchhHH
Q 004878 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH---HNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (725)
Q Consensus 431 ~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~---~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai 507 (725)
|.++ +++++++|++|+++..+.+.+.++..++|+......+.. ..+.+++++++.++..+.+-.. .++
T Consensus 140 TENP---sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R------~aL 210 (436)
T COG2256 140 TENP---SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR------RAL 210 (436)
T ss_pred CCCC---CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH------HHH
Confidence 9997 789999999999999999999999999998844333221 2245899999999999886532 455
Q ss_pred HHHHHHHHH
Q 004878 508 DLVDEAGSR 516 (725)
Q Consensus 508 ~ll~~a~~~ 516 (725)
+.++.+...
T Consensus 211 N~LE~~~~~ 219 (436)
T COG2256 211 NLLELAALS 219 (436)
T ss_pred HHHHHHHHh
Confidence 555554443
No 17
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.4e-20 Score=203.30 Aligned_cols=201 Identities=23% Similarity=0.303 Sum_probs=164.6
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-.|+++=|.++..+.|.+.+.- ..+..||||||||||||++|+++|.+. +..++.+.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvk 500 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVK 500 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeecc
Confidence 4567788888888777765422 566789999999999999999999998 78889998
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEEe
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (725)
..+++ .++.|+.|..++++|+.+++..|+|+|+||||.+...++.+.+ +....+.+.|+..|. ..+|.||++
T Consensus 501 gpEL~--sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 501 GPELF--SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred CHHHH--HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc--chHHHHHHHHHHHcccccccCcEEEEec
Confidence 88888 5889999999999999999999999999999999877653221 234456666665554 467999999
Q ss_pred ccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHhhhhcccCCCchh
Q 004878 430 TTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~-~l~~l~~~s~~~i~~r~lp~~ 505 (725)
||.++ .+|++|.| || +.|+|+.|+.+.|.+||+...++ +.+.++ .++.+++.+++|.+ .+
T Consensus 577 TNRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk------mp~~~~vdl~~La~~T~g~SG-----Ae 640 (693)
T KOG0730|consen 577 TNRPD-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK------MPFSEDVDLEELAQATEGYSG-----AE 640 (693)
T ss_pred cCChh-----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc------CCCCccccHHHHHHHhccCCh-----HH
Confidence 99998 89999999 99 58999999999999999887773 455555 67889998888865 67
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
...++.+|+..+
T Consensus 641 l~~lCq~A~~~a 652 (693)
T KOG0730|consen 641 IVAVCQEAALLA 652 (693)
T ss_pred HHHHHHHHHHHH
Confidence 788888887755
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.85 E-value=3.8e-20 Score=179.84 Aligned_cols=194 Identities=23% Similarity=0.304 Sum_probs=148.1
Q ss_pred hhhhhcCCCcccccHHHHHHHHH---HHhc------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 282 ARASEELIDPVIGRETEIQRIIQ---ILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 282 ~~~~~~~l~~liG~~~~i~~l~~---~L~~------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
+....-+||++|||++..++..- .|.. ..+.|+||+||||||||++|+++|.+. ...++.+
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~v 182 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLLV 182 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEEe
Confidence 44456689999999998876443 3333 567899999999999999999999987 6667778
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEE
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIA 428 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~ 428 (725)
....++ ..+.|+-..+++.+++.+++..|||+||||+|.+.-...-.. -++...++.|.|+.-|. +..++.|+
T Consensus 183 kat~li--GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe-lRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 183 KATELI--GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE-LRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred chHHHH--HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH-hcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 777777 456788888999999999999999999999998843221100 01123456677765543 45689999
Q ss_pred eccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcc
Q 004878 429 STTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~ 498 (725)
+||.++ .+|+++++|| ..|+|..|+.++|.+|++..++.+ .+.+... +++++..+.++..
T Consensus 260 aTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~----Plpv~~~-~~~~~~~t~g~Sg 320 (368)
T COG1223 260 ATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF----PLPVDAD-LRYLAAKTKGMSG 320 (368)
T ss_pred ecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC----CCccccC-HHHHHHHhCCCCc
Confidence 999998 7899999999 589999999999999998887755 3333332 6777777776643
No 19
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5e-20 Score=208.68 Aligned_cols=303 Identities=24% Similarity=0.278 Sum_probs=196.7
Q ss_pred HHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCC
Q 004878 304 QILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGD 383 (725)
Q Consensus 304 ~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~ 383 (725)
+.+......+++++||||+|||.++++++.. . .. . ..++..... .++.++.+..+..++..+....+
T Consensus 11 ~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~--~-~~-------~-~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~ 77 (494)
T COG0464 11 KKLGIEPPKGVLLHGPPGTGKTLLARALANE--G-AE-------F-LSINGPEIL--SKYVGESELRLRELFEEAEKLAP 77 (494)
T ss_pred HHhCCCCCCCceeeCCCCCchhHHHHHHHhc--c-Cc-------c-cccCcchhh--hhhhhHHHHHHHHHHHHHHHhCC
Confidence 3344567788999999999999999999987 1 11 1 222333322 35667788889999999998888
Q ss_pred eEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc---CCCeEEEEeccchhhhhhhcccHHHHc--cc-ceEEecCC
Q 004878 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQDEHRTQFEKDKALAR--RF-QPVLISEP 457 (725)
Q Consensus 384 ~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~P 457 (725)
.++++||++.+.+...... ......+...+...+. ++.+.+++.++... .+++++++ || ..+.+..|
T Consensus 78 ~ii~~d~~~~~~~~~~~~~--~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 78 SIIFIDEIDALAPKRSSDQ--GEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred CeEeechhhhcccCccccc--cchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCCC
Confidence 9999999999987654411 1223334444443332 34477777777665 77888877 78 47889999
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCC
Q 004878 458 SQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP 536 (725)
Q Consensus 458 s~ee~~~IL~~~~~~~~~~~~~~i~-~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~ 536 (725)
+...+.+|+....... .+. +.....++..+.++.. .+...+..++.........
T Consensus 151 ~~~~~~ei~~~~~~~~------~~~~~~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~r~~-------------- 205 (494)
T COG0464 151 DEAGRLEILQIHTRLM------FLGPPGTGKTLAARTVGKSG-----ADLGALAKEAALRELRRAI-------------- 205 (494)
T ss_pred CHHHHHHHHHHHHhcC------CCcccccHHHHHHhcCCccH-----HHHHHHHHHHHHHHHHhhh--------------
Confidence 9988888876655422 222 4456666666665543 3333333333322211100
Q ss_pred ChhHHHHHHHHHHhHHHHHhcccccchhhhccCCcchHHHhccCCCCCCCCCCCccCHHHHHHHHHhhhC-----CChhh
Q 004878 537 PDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG-----IPVQQ 611 (725)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~v~~~~tg-----ip~~~ 611 (725)
........++.+++...+....+ +....
T Consensus 206 -----------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (494)
T COG0464 206 -----------------------------------------------DLVGEYIGVTEDDFEEALKKVLPSRGVLFEDED 238 (494)
T ss_pred -----------------------------------------------ccCcccccccHHHHHHHHHhcCcccccccCCCC
Confidence 00011234555555555555433 34446
Q ss_pred ccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceE
Q 004878 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSML 691 (725)
Q Consensus 612 l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lI 691 (725)
++|++.+++...++.+.+.+.+. +...-.+.+.|+..|. ++|||||||||||++||++|+++ +.+|+
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~------~~~~e~~~~~~~~~~~----giLl~GpPGtGKT~lAkava~~~---~~~fi 305 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETP------LKRPELFRKLGLRPPK----GVLLYGPPGTGKTLLAKAVALES---RSRFI 305 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhH------hhChHHHHhcCCCCCC----eeEEECCCCCCHHHHHHHHHhhC---CCeEE
Confidence 77888777777777665433222 1111123334666553 99999999999999999999987 78999
Q ss_pred EecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 692 RLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 692 rid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
++++|+|++| |||.+|++||
T Consensus 306 ~v~~~~l~sk------------~vGesek~ir 325 (494)
T COG0464 306 SVKGSELLSK------------WVGESEKNIR 325 (494)
T ss_pred EeeCHHHhcc------------ccchHHHHHH
Confidence 9999999998 9999999987
No 20
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.3e-19 Score=201.15 Aligned_cols=380 Identities=18% Similarity=0.184 Sum_probs=243.1
Q ss_pred HhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhc--------------
Q 004878 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHS-------------- 147 (725)
Q Consensus 84 ~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~-------------- 147 (725)
.||+...+++..|..+|...++.+|+++|||++++.++.+ ..+|...+++...+...+...-+.
T Consensus 73 ~~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (786)
T COG0542 73 YLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGNEVDSKNAEEDQDA 152 (786)
T ss_pred CCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHHHHHHHhcccccCCcccccchhh
Confidence 5799999999999999999999999999999999999876 678888999888664333322110
Q ss_pred ------------------------------------CCCCC--------------------------------------C
Q 004878 148 ------------------------------------TNNQD--------------------------------------T 153 (725)
Q Consensus 148 ------------------------------------~~~~~--------------------------------------~ 153 (725)
....+ +
T Consensus 153 L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 153 LEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred HHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 00000 3
Q ss_pred chhhccCCCCCCCCCCCCCHHHHHHHHH----------------------------------------------------
Q 004878 154 DDAAAQGKPFSSAAKMPFSISTKRVFEA---------------------------------------------------- 181 (725)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~s~~~~~vl~~---------------------------------------------------- 181 (725)
|.+.+ .+++.++..|.+++|.|++.
T Consensus 233 D~g~L---vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~ 309 (786)
T COG0542 233 DLGSL---VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLD 309 (786)
T ss_pred cHHHH---hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHH
Confidence 33333 45677778888888888887
Q ss_pred ---------------------------------------------------HHHHHHhcCCCccCHHHHHHHhhhcCCcc
Q 004878 182 ---------------------------------------------------AVEYSRSRGYNFIAPEHIALGLFTVDDGS 210 (725)
Q Consensus 182 ---------------------------------------------------A~~~a~~~g~~~V~~~hlllall~~~~~~ 210 (725)
|...|..+.+.||+..+|....++.-|..
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA 389 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEA 389 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHH
Confidence 88888889999999999999999888888
Q ss_pred hhHHHHhhcCCHHH---HHHHHHHhhhhhhhcc-CCCCcccccccc-----------------------ccccccc-ccc
Q 004878 211 AGRVLKRLGVDVNH---LAAVAVSRLQGELAKE-GREPSLAKGVRE-----------------------NSISGKT-AAL 262 (725)
Q Consensus 211 a~~iL~~~gv~~~~---l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------------~~~~~~~-~~~ 262 (725)
++++--+.. .+.. +.+.+...- .+.... ++.....+.... .....-. +|-
T Consensus 390 ~a~~~l~~~-~p~~l~~~~~~~~~l~-~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~T 467 (786)
T COG0542 390 GARVRLEID-KPEELDELERELAQLE-IEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWT 467 (786)
T ss_pred HHHHHhccc-CCcchhHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHH
Confidence 888776644 3332 322222210 000000 000000000000 0000000 000
Q ss_pred CCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhc---------CCCCCceEEcCCCChHHHHHHHHHH
Q 004878 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR---------RTKNNPILLGESGVGKTAIAEGLAI 333 (725)
Q Consensus 263 ~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~---------~~~~~iLL~Gp~G~GKT~la~~la~ 333 (725)
.-| . ..+.+......-.+...--..++||++.+..+...+.+ ++..++||.||+|||||.+|++||.
T Consensus 468 gIP---v-~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 468 GIP---V-AKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred CCC---h-hhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 000 0 00000000000111111224799999999999998876 2334679999999999999999999
Q ss_pred HHHhcCCCcccCCCeEEEeehhhhhc----------cccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC
Q 004878 334 RIVQAEVPVFLLSKRIMSLDMGLLMA----------GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403 (725)
Q Consensus 334 ~l~~~~~p~~l~~~~l~~ld~~~l~~----------g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~ 403 (725)
.+... ...++.+||+++.. ...|.|--+ =..+-+.+++.+.+|+++|||+..
T Consensus 544 ~Lfg~-------e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA--------- 605 (786)
T COG0542 544 ALFGD-------EQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA--------- 605 (786)
T ss_pred HhcCC-------CccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc---------
Confidence 99432 57789999988751 112222110 112334455677889999999988
Q ss_pred CCCCcHHHHHHHhhhhcCCC-------------eEEEEeccchhhh-----------------hh------hcccHHHHc
Q 004878 404 NKGTGLDISNLLKPSLGRGE-------------LQCIASTTQDEHR-----------------TQ------FEKDKALAR 447 (725)
Q Consensus 404 ~~~~~~~~~~~L~~~l~~~~-------------v~vI~at~~~~~~-----------------~~------~~ld~~L~~ 447 (725)
..+++|+|++++..|. .++|.|+|..... .. ....|.|..
T Consensus 606 ----HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN 681 (786)
T COG0542 606 ----HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN 681 (786)
T ss_pred ----CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh
Confidence 7799999999998654 4788887743110 00 013478888
Q ss_pred ccc-eEEecCCCHHHHHHHHHHHHHHHH-----hccCCCCCHHHHHHHHHHhh
Q 004878 448 RFQ-PVLISEPSQEDAVRILLGLREKYE-----AHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 448 Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~-----~~~~~~i~~~~l~~l~~~s~ 494 (725)
|++ +|.|.+.+.++..+|+..++.+.. ....+.+++++.++++..+.
T Consensus 682 Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 682 RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhcc
Confidence 995 899999999999999887665542 23456789999999988654
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.4e-19 Score=183.56 Aligned_cols=204 Identities=20% Similarity=0.240 Sum_probs=154.5
Q ss_pred hcCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 286 EELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
.-++++|.|..+.++-|.+.+-- +.=.++|++||||||||.||+++|.++ +..++.+.
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVS 277 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVS 277 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEec
Confidence 34678999999998888876432 333679999999999999999999998 66777776
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCC-eE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGE-LQ 425 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~-v~ 425 (725)
.+.+. .+++|+.++.++-+|+.++...|++|||||||.|+...+.... .+.+..+.+-|+-.+. ..+ |.
T Consensus 278 sstlt--SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E-HEaSRRvKsELLvQmDG~~~t~e~~k~Vm 354 (491)
T KOG0738|consen 278 SSTLT--SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE-HEASRRVKSELLVQMDGVQGTLENSKVVM 354 (491)
T ss_pred hhhhh--hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc-hhHHHHHHHHHHHHhhccccccccceeEE
Confidence 66665 6899999999999999999999999999999999986654221 1233344444443332 223 56
Q ss_pred EEEeccchhhhhhhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCch
Q 004878 426 CIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 426 vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
|+++||.+- ++|.+|+|||. .|.|+.|+.+.|..+|+..+..... -++-.++.+++.+++|.. +
T Consensus 355 VLAATN~PW-----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-----~~~~~~~~lae~~eGySG-----a 419 (491)
T KOG0738|consen 355 VLAATNFPW-----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-----DDPVNLEDLAERSEGYSG-----A 419 (491)
T ss_pred EEeccCCCc-----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-----CCCccHHHHHHHhcCCCh-----H
Confidence 667777763 89999999994 8999999999999999887763322 233346778888888865 6
Q ss_pred hHHHHHHHHHHHH
Q 004878 505 KAIDLVDEAGSRA 517 (725)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (725)
++..++.+|....
T Consensus 420 DI~nvCreAsm~~ 432 (491)
T KOG0738|consen 420 DITNVCREASMMA 432 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 22
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.4e-19 Score=191.26 Aligned_cols=180 Identities=22% Similarity=0.320 Sum_probs=143.1
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEE
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFI 388 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~I 388 (725)
..+.++||+||||||||.||+++|.+. +..++.+-..+++ .+|.|+.+..++.+|+.++.+.|+|+|+
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVGESErAVR~vFqRAR~saPCVIFF 610 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVGESERAVRQVFQRARASAPCVIFF 610 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhhhHHHHHHHHHHHhhcCCCeEEEe
Confidence 556789999999999999999999998 7888999888888 5899999999999999999999999999
Q ss_pred ccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEEeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHH
Q 004878 389 DEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQED 461 (725)
Q Consensus 389 DEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee 461 (725)
||+|.|++..+.+. ......+.|.|+.-|. +..|.||++||.++ .+||++.| ||. .+.++.|+.+|
T Consensus 611 DEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 611 DEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred cchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccCceeeecCCCHHH
Confidence 99999998765532 2344556777765543 56799999999998 78999999 994 78999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHhh--hhcccCCCchhHHHHHHHHHHH
Q 004878 462 AVRILLGLREKYEAHHNCKFTLE-AINAAVHLSA--RYISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 462 ~~~IL~~~~~~~~~~~~~~i~~~-~l~~l~~~s~--~~i~~r~lp~~ai~ll~~a~~~ 516 (725)
|..||+.+.+. ++..++++ .++.++.... +|.+ .+...++.+|...
T Consensus 684 R~~ILK~~tkn----~k~pl~~dVdl~eia~~~~c~gftG-----ADLaaLvreAsi~ 732 (802)
T KOG0733|consen 684 RVAILKTITKN----TKPPLSSDVDLDEIARNTKCEGFTG-----ADLAALVREASIL 732 (802)
T ss_pred HHHHHHHHhcc----CCCCCCcccCHHHHhhcccccCCch-----hhHHHHHHHHHHH
Confidence 99999988873 33344333 3566665543 5543 5556666666543
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=8.6e-20 Score=177.85 Aligned_cols=189 Identities=21% Similarity=0.304 Sum_probs=127.4
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhc-----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.++.+.+||..|+++|||++.+..+.-++.. ....|+|||||||+||||||+.+|+++ +..+..+
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~ 81 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKIT 81 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEE
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEec
Confidence 4567889999999999999999887655432 234689999999999999999999998 5555554
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC---------
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--------- 423 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~--------- 423 (725)
+...+. ..++ +..++..++ .+.||||||||++ ...+++.|.+.++.+.
T Consensus 82 sg~~i~----k~~d----l~~il~~l~--~~~ILFIDEIHRl-------------nk~~qe~LlpamEd~~idiiiG~g~ 138 (233)
T PF05496_consen 82 SGPAIE----KAGD----LAAILTNLK--EGDILFIDEIHRL-------------NKAQQEILLPAMEDGKIDIIIGKGP 138 (233)
T ss_dssp ECCC------SCHH----HHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSS
T ss_pred cchhhh----hHHH----HHHHHHhcC--CCcEEEEechhhc-------------cHHHHHHHHHHhccCeEEEEecccc
Confidence 432211 1122 333444333 3569999999999 4578889999998643
Q ss_pred -----------eEEEEeccchhhhhhhcccHHHHcccce-EEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 424 -----------LQCIASTTQDEHRTQFEKDKALARRFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 424 -----------v~vI~at~~~~~~~~~~ld~~L~~Rf~~-I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
+.+||+||... .+.++|++||.. ..+..++.++..+|++.-.. ..++.++++...+++.
T Consensus 139 ~ar~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~----~l~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 139 NARSIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR----ILNIEIDEDAAEEIAR 209 (233)
T ss_dssp S-BEEEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCH----CTT-EE-HHHHHHHHH
T ss_pred ccceeeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHH----HhCCCcCHHHHHHHHH
Confidence 46788888876 788999999975 47999999999999976554 5688999999999998
Q ss_pred HhhhhcccCCCchhHHHHHHHHH
Q 004878 492 LSARYISDRYLPDKAIDLVDEAG 514 (725)
Q Consensus 492 ~s~~~i~~r~lp~~ai~ll~~a~ 514 (725)
.+.+. |.-|..++..+-
T Consensus 210 rsrGt------PRiAnrll~rvr 226 (233)
T PF05496_consen 210 RSRGT------PRIANRLLRRVR 226 (233)
T ss_dssp CTTTS------HHHHHHHHHHHC
T ss_pred hcCCC------hHHHHHHHHHHH
Confidence 87653 556677765543
No 24
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.5e-18 Score=190.98 Aligned_cols=204 Identities=23% Similarity=0.323 Sum_probs=155.0
Q ss_pred cCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
-++||+=|-++....+.+.+.- +++.+||||||||||||.+|+++|.++ ...++++..
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKG 738 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKG 738 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecC
Confidence 3678999999988888886543 446789999999999999999999998 667778877
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHH-HHHHHhhhhc------CCCeEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD-ISNLLKPSLG------RGELQCI 427 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~-~~~~L~~~l~------~~~v~vI 427 (725)
.+++ ..|.|+.|+.++++|+.++...|||||+||+|.+.+.++.. |++++.+| +...|+.-|. ...+.||
T Consensus 739 PELL--NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 739 PELL--NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred HHHH--HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 7877 47899999999999999999999999999999999876553 22344443 4444443332 3569999
Q ss_pred EeccchhhhhhhcccHHHHc--ccc-eEEecCC-CHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCc
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~P-s~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp 503 (725)
|+||.++ -+||+|.| ||+ .+++.++ +.+....+|+.+.+++....+++ +..+++.|.-.++ .
T Consensus 816 GATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~cp~~~T----G 881 (953)
T KOG0736|consen 816 GATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD-----LVEIAKKCPPNMT----G 881 (953)
T ss_pred ecCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhCCcCCc----h
Confidence 9999998 78999999 996 6888887 67778999999988774443332 4556666654332 3
Q ss_pred hhHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRA 517 (725)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (725)
.+...++..|...+
T Consensus 882 ADlYsLCSdA~l~A 895 (953)
T KOG0736|consen 882 ADLYSLCSDAMLAA 895 (953)
T ss_pred hHHHHHHHHHHHHH
Confidence 45566666555433
No 25
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=1.7e-18 Score=191.83 Aligned_cols=203 Identities=21% Similarity=0.267 Sum_probs=153.5
Q ss_pred cCCCcccccHHHHHHHHHHHh----------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh
Q 004878 287 ELIDPVIGRETEIQRIIQILC----------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~----------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~ 356 (725)
..|+++.|.+..++.+.+... ...+.++||+||||||||.+|+++|.++ +..++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 357788998877766665321 1456789999999999999999999998 77889999988
Q ss_pred hhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc--CCCeEEEEeccchh
Q 004878 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDE 434 (725)
Q Consensus 357 l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~at~~~~ 434 (725)
+.. ++.|+.+.+++.+|..++...|+||||||||.++...... ++.+....+.+.++..+. +..+.+|+|||..+
T Consensus 295 l~~--~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~-~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 295 LFG--GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK-GDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hcc--cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC-CCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 774 5678889999999999998899999999999998643221 111233445555555554 35688999999887
Q ss_pred hhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHH
Q 004878 435 HRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (725)
Q Consensus 435 ~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~ 511 (725)
.+|+++.| ||+ .+.|+.|+.++|.+||+.++.+... ....+..++.+++.+.+|.+ .+...++.
T Consensus 372 -----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~---~~~~~~dl~~La~~T~GfSG-----AdI~~lv~ 438 (489)
T CHL00195 372 -----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP---KSWKKYDIKKLSKLSNKFSG-----AEIEQSII 438 (489)
T ss_pred -----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC---CcccccCHHHHHhhcCCCCH-----HHHHHHHH
Confidence 89999988 994 8999999999999999988875421 12335567888888887764 55555655
Q ss_pred HHHH
Q 004878 512 EAGS 515 (725)
Q Consensus 512 ~a~~ 515 (725)
+|+.
T Consensus 439 eA~~ 442 (489)
T CHL00195 439 EAMY 442 (489)
T ss_pred HHHH
Confidence 5544
No 26
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.81 E-value=5e-19 Score=179.35 Aligned_cols=188 Identities=22% Similarity=0.302 Sum_probs=146.6
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHH---HHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 277 CVDLTARASEELIDPVIGRETEIQR---IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~---l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
..+|.+++||.++++.|||++.+-+ |...+...+.++++|+||||||||+||+.|+...... ..+++++.
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------SyrfvelS 197 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVELS 197 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEEe
Confidence 4589999999999999999987754 5556667888999999999999999999999865221 23445443
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHh-----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~-----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~ 428 (725)
...++. ..++++|+.+++ ....||||||||++ ....+++|++.++.|.+.+||
T Consensus 198 --At~a~t-------~dvR~ife~aq~~~~l~krkTilFiDEiHRF-------------NksQQD~fLP~VE~G~I~lIG 255 (554)
T KOG2028|consen 198 --ATNAKT-------NDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-------------NKSQQDTFLPHVENGDITLIG 255 (554)
T ss_pred --ccccch-------HHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-------------hhhhhhcccceeccCceEEEe
Confidence 333322 236777777764 35789999999999 234678999999999999999
Q ss_pred eccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhc---------cCCCCCHHHHHHHHHHhhhh
Q 004878 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH---------HNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~---------~~~~i~~~~l~~l~~~s~~~ 496 (725)
+|+.++ .+.++.+|.+||.++.++....+....||..-...+... ..+.+++.++++++.++.+.
T Consensus 256 ATTENP---SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGD 329 (554)
T KOG2028|consen 256 ATTENP---SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGD 329 (554)
T ss_pred cccCCC---ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCch
Confidence 999887 778999999999999999999999999998755433111 12357888899999888754
No 27
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2e-18 Score=187.92 Aligned_cols=203 Identities=20% Similarity=0.202 Sum_probs=155.7
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 343 (725)
.+|.+++||.+|+++||++..+..|..++......+ +||+||+|||||++|+.+|+.+.....+..
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 568899999999999999999999999988877655 799999999999999999999854321110
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
.....++++|... ..| ...++.+.+.+. .++..|+||||+|.| ..+.+|.|+..
T Consensus 86 ~g~~~dviEIdaas------~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~L-------------s~~A~NALLKt 144 (484)
T PRK14956 86 KGISSDVLEIDAAS------NRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHML-------------TDQSFNALLKT 144 (484)
T ss_pred ccCCccceeechhh------ccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------CHHHHHHHHHH
Confidence 0011344444321 111 122444444443 235679999999999 44678899999
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. +.+++|++|+... .+.+++++||+.+.|..++.++..+.|+.++.. .++.++++++..+++.+++.
T Consensus 145 LEEPp~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 145 LEEPPAHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred hhcCCCceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCh
Confidence 987 6788888888765 788999999999999999999999888887763 47899999999999999887
Q ss_pred cccCCCchhHHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~~ 516 (725)
+ .+++.+++.+++.
T Consensus 216 ~------RdAL~lLeq~i~~ 229 (484)
T PRK14956 216 V------RDMLSFMEQAIVF 229 (484)
T ss_pred H------HHHHHHHHHHHHh
Confidence 5 4788899887653
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.5e-18 Score=167.22 Aligned_cols=188 Identities=20% Similarity=0.257 Sum_probs=151.2
Q ss_pred CCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 288 LIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
+++++-|.+...+.|.+.+-- ..-+.+||+|||||||+.||+++|.+. +..++++..+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSS 200 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSS 200 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehH
Confidence 678999999999999886422 223679999999999999999999988 6788898888
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-----CCCeEEEEec
Q 004878 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIAST 430 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~v~vI~at 430 (725)
+++ .++.|+.+..++.+|+.++++.|+|+||||||.++++++.+.. +....+..-|+-.++ +..+.|+++|
T Consensus 201 DLv--SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs--easRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 201 DLV--SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES--EASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred HHH--HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch--HHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 888 5789999999999999999999999999999999987655321 223333333333332 3568999999
Q ss_pred cchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcc
Q 004878 431 TQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (725)
Q Consensus 431 ~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~ 498 (725)
|.+- .+|.+++||| ..|+|+.|....|..+++-.+. .....+++.....+...+++|..
T Consensus 277 NiPw-----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG----~tp~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 277 NIPW-----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG----DTPHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred CCch-----hHHHHHHHHhhcceeccCCcHHHhhhhheeccC----CCccccchhhHHHHHhhcCCCCc
Confidence 9874 8999999999 4899999999999998865443 33457899999999999999865
No 29
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=3.4e-17 Score=192.83 Aligned_cols=179 Identities=18% Similarity=0.252 Sum_probs=128.4
Q ss_pred CcccccHHHHHHHHHHHhcC---------CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-
Q 004878 290 DPVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~---------~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~- 359 (725)
..++||++.++.+...+.+. ...++||+||+|||||++|++||+.+ +..++.+|++.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----------~~~~~~~d~se~~~~ 523 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----------GVHLERFDMSEYMEK 523 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----------cCCeEEEeCchhhhc
Confidence 46899999999999887751 22357999999999999999999988 55677888766432
Q ss_pred -------c--ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------
Q 004878 360 -------G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (725)
Q Consensus 360 -------g--~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------- 423 (725)
| ..+.|.- ....+.+.++..+..||+|||+|.+ ..++++.|+++++.+.
T Consensus 524 ~~~~~lig~~~gyvg~~--~~~~l~~~~~~~p~~VvllDEieka-------------~~~~~~~Ll~~ld~g~~~d~~g~ 588 (731)
T TIGR02639 524 HTVSRLIGAPPGYVGFE--QGGLLTEAVRKHPHCVLLLDEIEKA-------------HPDIYNILLQVMDYATLTDNNGR 588 (731)
T ss_pred ccHHHHhcCCCCCcccc--hhhHHHHHHHhCCCeEEEEechhhc-------------CHHHHHHHHHhhccCeeecCCCc
Confidence 1 1122211 1122344455667889999999988 5578999999988652
Q ss_pred ------eEEEEeccchh--hhh------------------hhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHh-
Q 004878 424 ------LQCIASTTQDE--HRT------------------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA- 475 (725)
Q Consensus 424 ------v~vI~at~~~~--~~~------------------~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~- 475 (725)
.++|+|+|... ..+ .....|.|..||. +|.|.+.+.++..+|++..+.++..
T Consensus 589 ~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~ 668 (731)
T TIGR02639 589 KADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQ 668 (731)
T ss_pred ccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45788876531 000 0124688999994 8889999999999999987765421
Q ss_pred --c--cCCCCCHHHHHHHHHHh
Q 004878 476 --H--HNCKFTLEAINAAVHLS 493 (725)
Q Consensus 476 --~--~~~~i~~~~l~~l~~~s 493 (725)
. ..+.++++++++++..+
T Consensus 669 l~~~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 669 LNEKNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred HHhCCCeEEeCHHHHHHHHHhC
Confidence 2 24678999999998864
No 30
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=2.7e-18 Score=192.95 Aligned_cols=203 Identities=17% Similarity=0.190 Sum_probs=154.6
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCcc-c-----------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF-L----------- 344 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~~-l----------- 344 (725)
..|.++||+.+|+++||+++.++.|...+...+..|. ||+||+|||||++++.|++.+........ -
T Consensus 4 ~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~ 83 (830)
T PRK07003 4 QVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83 (830)
T ss_pred HhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHh
Confidence 3488999999999999999999999999988666665 89999999999999999999864211100 0
Q ss_pred --CCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 345 --~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
....++++|... .++ .+.++.+++.+. ..+..|+||||+|.| ....+|.|++.
T Consensus 84 ~G~h~DviEIDAas------~rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------T~~A~NALLKt 142 (830)
T PRK07003 84 EGRFVDYVEMDAAS------NRG--VDEMAALLERAVYAPVDARFKVYMIDEVHML-------------TNHAFNAMLKT 142 (830)
T ss_pred cCCCceEEEecccc------ccc--HHHHHHHHHHHHhccccCCceEEEEeChhhC-------------CHHHHHHHHHH
Confidence 012344544321 111 122445555443 234679999999999 33567888888
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
|+. ..+.+|++||... .+.+.|++||+.+.|..++.++..+.|+.++. ..++.++++.+..+++.+++.
T Consensus 143 LEEPP~~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~----~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 143 LEEPPPHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILG----EERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHhcCCCeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 886 4688888888765 66789999999999999999999999988876 347889999999999999876
Q ss_pred cccCCCchhHHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~~ 516 (725)
+ .+++.+++.++..
T Consensus 214 m------RdALsLLdQAia~ 227 (830)
T PRK07003 214 M------RDALSLTDQAIAY 227 (830)
T ss_pred H------HHHHHHHHHHHHh
Confidence 5 4788888887754
No 31
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.7e-18 Score=183.08 Aligned_cols=204 Identities=22% Similarity=0.250 Sum_probs=145.2
Q ss_pred hcCCCcccccHHHHHHHHH---HHhc---------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 286 EELIDPVIGRETEIQRIIQ---ILCR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~---~L~~---------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
.-+|+++-|.|+....|.+ .|.. +-+.+|||+||||||||.||+++|.+. ++| +++..
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA---~VP-------FF~~s 369 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA---GVP-------FFYAS 369 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc---CCC-------eEecc
Confidence 4578999999986665555 4443 445789999999999999999999887 444 44443
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCeEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQC 426 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~v 426 (725)
.+++. ..+.|.=..+++++|..++...|||+||||||.+-+++... + ..-....|.++|. +..++|
T Consensus 370 GSEFd--Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~-~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 370 GSEFD--EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----D-QHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred ccchh--hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----H-HHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 33332 22344446789999999999999999999999995554431 1 1123334444442 456999
Q ss_pred EEeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCc
Q 004878 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp 503 (725)
|++||.++ .+|++|.| ||+ .|.++.|+..-|.+||.....+... .-.+++.+ +++-+.+| -.
T Consensus 443 igATNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~--~~~VD~~i---iARGT~GF-----sG 507 (752)
T KOG0734|consen 443 IGATNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL--DEDVDPKI---IARGTPGF-----SG 507 (752)
T ss_pred EeccCChh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCc--ccCCCHhH---hccCCCCC-----ch
Confidence 99999998 89999999 995 7999999999999999888775422 22334333 33333333 33
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 004878 504 DKAIDLVDEAGSRAHIEL 521 (725)
Q Consensus 504 ~~ai~ll~~a~~~~~~~~ 521 (725)
.+..++++.|+.++.+..
T Consensus 508 AdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 508 ADLANLVNQAALKAAVDG 525 (752)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 677888888888777654
No 32
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.78 E-value=9.2e-18 Score=183.25 Aligned_cols=201 Identities=22% Similarity=0.277 Sum_probs=151.7
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-.++++.|.+++++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEee
Confidence 3567899999999998886532 456789999999999999999999987 56788888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCeEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQC 426 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~v 426 (725)
+..+. ..+.|+.+..++.+|+.+....|+||||||+|.+++....... .+..+++..+..++. .+.+.|
T Consensus 198 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~--~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 198 GSELV--QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred hHHHh--HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCC--CccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 88776 3456777788899999998888999999999999865433211 223444555554442 357899
Q ss_pred EEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHhhhhcccCCC
Q 004878 427 IASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYL 502 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~-~~~l~~l~~~s~~~i~~r~l 502 (725)
|++||..+ .+|+++.+ || ..|.|+.|+.++|.+||+...... .+. +..+..++..+.+|.
T Consensus 274 I~aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~------~~~~~~~~~~la~~t~g~s----- 337 (389)
T PRK03992 274 IAATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM------NLADDVDLEELAELTEGAS----- 337 (389)
T ss_pred EEecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC------CCCCcCCHHHHHHHcCCCC-----
Confidence 99999886 78999987 89 489999999999999998766533 222 133566777777664
Q ss_pred chhHHHHHHHHHHHH
Q 004878 503 PDKAIDLVDEAGSRA 517 (725)
Q Consensus 503 p~~ai~ll~~a~~~~ 517 (725)
+.+...++.+|+..+
T Consensus 338 gadl~~l~~eA~~~a 352 (389)
T PRK03992 338 GADLKAICTEAGMFA 352 (389)
T ss_pred HHHHHHHHHHHHHHH
Confidence 367777888877655
No 33
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.78 E-value=1.6e-17 Score=180.32 Aligned_cols=202 Identities=20% Similarity=0.265 Sum_probs=147.7
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-.++++.|.+.+++.+.+.+.. ..+.++||+||||||||++++++|..+ +..++.+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~ 211 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVV 211 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 3577899999988888876531 356789999999999999999999987 56677777
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCeEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQC 426 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~v 426 (725)
...+. ..+.|+.+..++.+|..+....|+||||||+|.++....... .+....++..+..++. ...+.+
T Consensus 212 ~s~l~--~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~--~~~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 212 GSEFV--QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ--TGADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred hHHHH--HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc--CCccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 66654 345677778899999999888999999999999976542211 1122334444444332 356889
Q ss_pred EEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCc
Q 004878 427 IASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp 503 (725)
|++||..+ .+|+++.| || ..|.|+.|+.++|..|++.+..+. ++. .+-.+..++..+.+|. +
T Consensus 288 I~aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~----~l~-~dvd~~~la~~t~g~s-----g 352 (398)
T PTZ00454 288 IMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM----NLS-EEVDLEDFVSRPEKIS-----A 352 (398)
T ss_pred EEecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC----CCC-cccCHHHHHHHcCCCC-----H
Confidence 99999887 89999988 99 489999999999999999877643 221 1223566677766654 4
Q ss_pred hhHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRA 517 (725)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (725)
.+...++.+|+..+
T Consensus 353 aDI~~l~~eA~~~A 366 (398)
T PTZ00454 353 ADIAAICQEAGMQA 366 (398)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777776543
No 34
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=4.8e-18 Score=188.82 Aligned_cols=202 Identities=17% Similarity=0.193 Sum_probs=153.8
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCC---------Ccc----
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEV---------PVF---- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~---------p~~---- 343 (725)
..|.++||+.+|+++||++..++.|.+.+...+..|. ||+||+|+|||++++.|++.+...+. |-.
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 4578999999999999999999999999998777775 89999999999999999999964210 000
Q ss_pred ------cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHH
Q 004878 344 ------LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (725)
Q Consensus 344 ------l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (725)
.....++++|...- ... +.++++++.+. .++..|+||||+|.| ....+|
T Consensus 84 C~~I~aG~hpDviEIdAas~----~gV----DdIReLie~~~~~P~~gr~KViIIDEah~L-------------s~~AaN 142 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASN----RGV----DEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------------TNHAFN 142 (700)
T ss_pred HHHHHcCCCCcceEeccccc----CCH----HHHHHHHHHHHhchhcCCceEEEEEChHhc-------------CHHHHH
Confidence 00123445443211 111 22444554443 345679999999999 346788
Q ss_pred HHhhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 414 ~L~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
.|++.|+. +.+.+|++||... .+.+.+++||+.+.|..++.++..+.|+.++. ..++.+++++++.+++
T Consensus 143 ALLKTLEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~----~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 143 AMLKTLEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG----EEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHhhccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Confidence 89999986 5688888888766 67799999999999999999999998888776 3478899999999999
Q ss_pred HhhhhcccCCCchhHHHHHHHHHH
Q 004878 492 LSARYISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 492 ~s~~~i~~r~lp~~ai~ll~~a~~ 515 (725)
.+++.+ .+++.+++.++.
T Consensus 214 ~A~Gs~------RdALsLLdQaia 231 (700)
T PRK12323 214 AAQGSM------RDALSLTDQAIA 231 (700)
T ss_pred HcCCCH------HHHHHHHHHHHH
Confidence 988764 477888887664
No 35
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.77 E-value=9.8e-18 Score=185.10 Aligned_cols=194 Identities=26% Similarity=0.349 Sum_probs=150.9
Q ss_pred hhhhhhhhcCCCcccccHHHHHH---HHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 279 DLTARASEELIDPVIGRETEIQR---IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~---l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
||.+++||..|+++||+++.+.. +..++......+++|+||||||||++|+.+++.. +..++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 58899999999999999999776 8888888888899999999999999999999987 4455665543
Q ss_pred hhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEecc
Q 004878 356 LLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~ 431 (725)
.. + ...++.+++.+. ..+..||||||+|.+ ....++.|++.++++.+++|++|+
T Consensus 71 ~~--~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-------------~~~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 71 TS--G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRF-------------NKAQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred cc--c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhh-------------CHHHHHHHHHHhhcCcEEEEEeCC
Confidence 21 1 112344444432 235789999999999 335678889999999999999887
Q ss_pred chhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHhhhhcccCCCchhHHHHH
Q 004878 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNC-KFTLEAINAAVHLSARYISDRYLPDKAIDLV 510 (725)
Q Consensus 432 ~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~-~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll 510 (725)
... ...+++++.+||..+.+.+++.++...+++..+..... ++ .+++++++.++..+.+.. ..+++++
T Consensus 129 ~n~---~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~Gd~------R~aln~L 197 (413)
T PRK13342 129 ENP---SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANGDA------RRALNLL 197 (413)
T ss_pred CCh---hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCCCH------HHHHHHH
Confidence 654 34678999999999999999999999999887765432 44 789999999998876543 3566666
Q ss_pred HHHHH
Q 004878 511 DEAGS 515 (725)
Q Consensus 511 ~~a~~ 515 (725)
+.++.
T Consensus 198 e~~~~ 202 (413)
T PRK13342 198 ELAAL 202 (413)
T ss_pred HHHHH
Confidence 66543
No 36
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.77 E-value=6.3e-18 Score=169.09 Aligned_cols=203 Identities=18% Similarity=0.218 Sum_probs=154.5
Q ss_pred hhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 276 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
.-..|+++|+|..||+++||+.++..|...+.++...|.|||||||||||+.++++++++.. | .+...++.+++.+
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~---~-~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC---E-QLFPCRVLELNAS 97 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC---c-cccccchhhhccc
Confidence 34569999999999999999999999999999988899999999999999999999999954 1 1223344444333
Q ss_pred hhhccccccchHHHHHHH---HHHHHH-----hc-CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCe
Q 004878 356 LLMAGAKERGELEARVTT---LISEIQ-----KS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GEL 424 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~---~~~~~~-----~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v 424 (725)
... |-. -..++++. +..... .. +..|++|||+|.+ ..++++.|+..+++ ..+
T Consensus 98 der-Gis---vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------tsdaq~aLrr~mE~~s~~t 160 (346)
T KOG0989|consen 98 DER-GIS---VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-------------TSDAQAALRRTMEDFSRTT 160 (346)
T ss_pred ccc-ccc---chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh-------------hHHHHHHHHHHHhccccce
Confidence 221 111 11111221 111110 01 2369999999999 56889999999986 567
Q ss_pred EEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCch
Q 004878 425 QCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 425 ~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
++|..||..+ .+.+.+.+||+.+.|++...++....|+.++. ..++.+++++++.++..+++-..
T Consensus 161 rFiLIcnyls-----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~----~E~v~~d~~al~~I~~~S~GdLR------ 225 (346)
T KOG0989|consen 161 RFILICNYLS-----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIAS----KEGVDIDDDALKLIAKISDGDLR------ 225 (346)
T ss_pred EEEEEcCChh-----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCcHH------
Confidence 8899999887 78899999999999999999999999999888 45899999999999999987653
Q ss_pred hHHHHHHHHH
Q 004878 505 KAIDLVDEAG 514 (725)
Q Consensus 505 ~ai~ll~~a~ 514 (725)
+|+..|+.+.
T Consensus 226 ~Ait~Lqsls 235 (346)
T KOG0989|consen 226 RAITTLQSLS 235 (346)
T ss_pred HHHHHHHHhh
Confidence 5666655443
No 37
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=3.6e-17 Score=169.64 Aligned_cols=213 Identities=19% Similarity=0.224 Sum_probs=150.4
Q ss_pred CCCcccccHHHHHHHHHHHhc---------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 288 LIDPVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~---------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.+++++|.+++.+++.++... ....|++|+||||||||++|+.+++.+..... .....++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEe
Confidence 456789999888877665321 23467899999999999999999998854321 124467788
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEec
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAST 430 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at 430 (725)
++..+.. .+.|+....++.+++.+. +.||||||+|.|...+.. ....+..+.|...++. +.+++|+++
T Consensus 81 ~~~~l~~--~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~~-----~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 81 ERADLVG--EYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGEK-----DFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred cHHHhhh--hhccchHHHHHHHHHhcc---CCEEEEechhhhccCCcc-----chHHHHHHHHHHHHhccCCCEEEEecC
Confidence 8877763 456677777777776543 569999999999532211 2234567777777764 457777777
Q ss_pred cchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcc---cCC-Cchh
Q 004878 431 TQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS---DRY-LPDK 505 (725)
Q Consensus 431 ~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~---~r~-lp~~ 505 (725)
+..+......++|+|.+|| ..|.++.++.+++.+|++.++.. .+..++++++..+.+...++.. ..+ -...
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~ 226 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARY 226 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHH
Confidence 7666556677899999999 57999999999999999988764 4677999999988777654431 111 1124
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
+.++++.|..+.
T Consensus 227 ~~n~~e~a~~~~ 238 (261)
T TIGR02881 227 VRNIIEKAIRRQ 238 (261)
T ss_pred HHHHHHHHHHHH
Confidence 456666666544
No 38
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.76 E-value=3.6e-16 Score=186.21 Aligned_cols=182 Identities=19% Similarity=0.238 Sum_probs=127.7
Q ss_pred CcccccHHHHHHHHHHHhcC---------CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-
Q 004878 290 DPVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~---------~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~- 359 (725)
+.++||++.++.+...+.+. +..++||+||+|||||++|++||+.+... ...++.+|++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-------~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-------EDAMIRLDMSEYMEK 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------ccceEEEEchhcccc
Confidence 57999999999999887641 11347899999999999999999988432 35677777766431
Q ss_pred -------c--ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------
Q 004878 360 -------G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (725)
Q Consensus 360 -------g--~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------- 423 (725)
| ..+.|.-+ ...+.+.++..+..|++|||+|.+ ..++++.|+++++.|.
T Consensus 582 ~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-------------~~~v~~~Llq~le~g~~~d~~g~ 646 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-------------HPDIFNLLLQILDDGRLTDSKGR 646 (821)
T ss_pred ccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-------------CHHHHHHHHHHhccCceecCCCc
Confidence 1 11222100 123344555667789999999988 5678999999998653
Q ss_pred ------eEEEEeccchhh-----------------------hhh---------hcccHHHHccc-ceEEecCCCHHHHHH
Q 004878 424 ------LQCIASTTQDEH-----------------------RTQ---------FEKDKALARRF-QPVLISEPSQEDAVR 464 (725)
Q Consensus 424 ------v~vI~at~~~~~-----------------------~~~---------~~ld~~L~~Rf-~~I~i~~Ps~ee~~~ 464 (725)
.++|.|+|...- ... ....|.|.+|+ .+|.|.+.+.++..+
T Consensus 647 ~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~ 726 (821)
T CHL00095 647 TIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWE 726 (821)
T ss_pred EEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHH
Confidence 467888774310 000 01347889999 688999999999999
Q ss_pred HHHHHHHHHH---hc--cCCCCCHHHHHHHHHHh
Q 004878 465 ILLGLREKYE---AH--HNCKFTLEAINAAVHLS 493 (725)
Q Consensus 465 IL~~~~~~~~---~~--~~~~i~~~~l~~l~~~s 493 (725)
|+...+.++. .. ..+.+++++.+++++.+
T Consensus 727 Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 727 IAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 9888766542 12 24678999999998864
No 39
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.75 E-value=4.5e-17 Score=177.88 Aligned_cols=203 Identities=23% Similarity=0.286 Sum_probs=147.5
Q ss_pred hhcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEE
Q 004878 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (725)
Q Consensus 285 ~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ 351 (725)
....|+++.|.+++++.+.+++.. ..+.++||+||||||||++|+++|.++ +..++.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~ 247 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATFLR 247 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEE
Confidence 345778999999999988887642 345689999999999999999999987 445666
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh-------cCCCe
Q 004878 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGEL 424 (725)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v 424 (725)
++...+. ..+.|+....++.+|..+....++||||||||.++....... .++..+++..+..++ ....+
T Consensus 248 V~~seL~--~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~--sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 248 VVGSELI--QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT--SGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred Eecchhh--hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC--CcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 6666654 345677777889999988888899999999999986543211 123334444444333 24678
Q ss_pred EEEEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHhhhhcccC
Q 004878 425 QCIASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDR 500 (725)
Q Consensus 425 ~vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~-~l~~l~~~s~~~i~~r 500 (725)
.||++||..+ .+|+++.| || ..|+|+.|+.++|.+||+....+. .+.++ .+..++..+.+|..
T Consensus 324 ~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~------~l~~dvdl~~la~~t~g~sg-- 390 (438)
T PTZ00361 324 KVIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM------TLAEDVDLEEFIMAKDELSG-- 390 (438)
T ss_pred EEEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC------CCCcCcCHHHHHHhcCCCCH--
Confidence 9999999876 78999987 88 589999999999999998776533 22222 35566666666543
Q ss_pred CCchhHHHHHHHHHHHH
Q 004878 501 YLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 501 ~lp~~ai~ll~~a~~~~ 517 (725)
.+...++.+|+..+
T Consensus 391 ---AdI~~i~~eA~~~A 404 (438)
T PTZ00361 391 ---ADIKAICTEAGLLA 404 (438)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 55566666666543
No 40
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.75 E-value=3.4e-17 Score=185.01 Aligned_cols=205 Identities=21% Similarity=0.278 Sum_probs=148.0
Q ss_pred hcCCCcccccHHHHHHHHHHHh------------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 286 EELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
.-+|++++|.++...++.+++. ...+.++||+||||||||++++++|.+. +.+++.++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 120 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSIS 120 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeecc
Confidence 3467889999887777666543 2345689999999999999999999887 66778887
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCCcHHHHHHHhhhh----cCCCeEEEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSL----GRGELQCIA 428 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l----~~~~v~vI~ 428 (725)
+..+.. .+.|.....++.+|+.+....|+||||||||.+......+..+ ........+.|+..+ .++.++||+
T Consensus 121 ~~~~~~--~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~ 198 (495)
T TIGR01241 121 GSDFVE--MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIA 198 (495)
T ss_pred HHHHHH--HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEE
Confidence 776652 3445566789999999988889999999999998654331110 011123334443333 346689999
Q ss_pred eccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchh
Q 004878 429 STTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
+||.++ .+|+++.| || ..|.|+.|+.++|.+||+.++... ... ++..+..++..+.+|.. .+
T Consensus 199 aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t~G~sg-----ad 263 (495)
T TIGR01241 199 ATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----KLA-PDVDLKAVARRTPGFSG-----AD 263 (495)
T ss_pred ecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----CCC-cchhHHHHHHhCCCCCH-----HH
Confidence 999987 89999998 89 489999999999999998877632 111 34446677777776543 67
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
...++.+|+..+
T Consensus 264 l~~l~~eA~~~a 275 (495)
T TIGR01241 264 LANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 41
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4e-17 Score=182.04 Aligned_cols=203 Identities=18% Similarity=0.183 Sum_probs=152.9
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 343 (725)
..|.+++||.+|+++||++..++.|..++...+..+. ||+||+|+|||++|+.+|+.+.....+..
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 3578999999999999999999999999988665554 99999999999999999999854211100
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
.....++++|.+.- .+ ...++.++..+. .++..|+||||+|.| ....++.|++.
T Consensus 83 ~g~hpDviEIDAAs~------~~--VddIReli~~~~y~P~~gk~KV~IIDEVh~L-------------S~~A~NALLKt 141 (702)
T PRK14960 83 EGRFIDLIEIDAASR------TK--VEDTRELLDNVPYAPTQGRFKVYLIDEVHML-------------STHSFNALLKT 141 (702)
T ss_pred cCCCCceEEeccccc------CC--HHHHHHHHHHHhhhhhcCCcEEEEEechHhc-------------CHHHHHHHHHH
Confidence 01224555553311 11 223555555443 234679999999999 33577889999
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. +.+.+|++|+... .+.+.+++||..+.|.+++.++..+.|+.++.+ .++.++++++..+++.+++.
T Consensus 142 LEEPP~~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~Gd 212 (702)
T PRK14960 142 LEEPPEHVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGS 212 (702)
T ss_pred HhcCCCCcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 987 5678888777654 456789999999999999999999999888873 47899999999999998865
Q ss_pred cccCCCchhHHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~~ 516 (725)
+ .+++.+++.++.+
T Consensus 213 L------RdALnLLDQaIay 226 (702)
T PRK14960 213 L------RDALSLTDQAIAY 226 (702)
T ss_pred H------HHHHHHHHHHHHh
Confidence 4 3777888877654
No 42
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5e-17 Score=186.29 Aligned_cols=202 Identities=18% Similarity=0.238 Sum_probs=153.1
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCC----Cccc--------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEV----PVFL-------- 344 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~----p~~l-------- 344 (725)
..|.+++||.+|++|||++..++.|..++...+..|. ||+||+|||||++|+.|++.+..... |-..
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 5788999999999999999999999999988777776 89999999999999999999864311 1000
Q ss_pred --CCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 345 --~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
....++++|... ..+ ...++.+++.+. .++..|+||||+|.| ..+.+|.|++.
T Consensus 84 ~g~~~DviEidAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~L-------------T~eAqNALLKt 142 (944)
T PRK14949 84 QGRFVDLIEVDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHML-------------SRSSFNALLKT 142 (944)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------CHHHHHHHHHH
Confidence 011223332211 111 122444444443 245679999999999 45788999999
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
|+. +.+++|++|+... .+.+.+++||..+.|.+++.++....|+.++.. .++.++++++..++..+++.
T Consensus 143 LEEPP~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd 213 (944)
T PRK14949 143 LEEPPEHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGS 213 (944)
T ss_pred HhccCCCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 996 5688888887765 567899999999999999999999999887764 47889999999999998876
Q ss_pred cccCCCchhHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~ 515 (725)
+ .+++.+++.++.
T Consensus 214 ~------R~ALnLLdQala 226 (944)
T PRK14949 214 M------RDALSLTDQAIA 226 (944)
T ss_pred H------HHHHHHHHHHHH
Confidence 4 477888876664
No 43
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.74 E-value=1.9e-16 Score=187.21 Aligned_cols=202 Identities=20% Similarity=0.269 Sum_probs=153.1
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-.++++.|.+...+.|.+.+.. ..+.++||+||||||||++|+++|.++ +..++.++
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~ 519 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVR 519 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 3678999999988888776532 345679999999999999999999988 67788888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEEe
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (725)
...+. .++.|+.+..++.+|..++...|+||||||+|.+++..+...+ ......+.+.|+..+. ...++||++
T Consensus 520 ~~~l~--~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~~~~v~vI~a 596 (733)
T TIGR01243 520 GPEIL--SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQELSNVVVIAA 596 (733)
T ss_pred hHHHh--hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 88876 4678889999999999999999999999999999875543211 1112345555554443 467999999
Q ss_pred ccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHhhhhcccCCCchh
Q 004878 430 TTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~-~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
||.++ .+|+++.| || ..|.++.|+.++|.+||+.... +..+. +..+..+++.+.+|.. .+
T Consensus 597 Tn~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~------~~~~~~~~~l~~la~~t~g~sg-----ad 660 (733)
T TIGR01243 597 TNRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR------SMPLAEDVDLEELAEMTEGYTG-----AD 660 (733)
T ss_pred CCChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc------CCCCCccCCHHHHHHHcCCCCH-----HH
Confidence 99987 79999998 99 4899999999999999976544 22332 2347788888877653 45
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
...++.+|+..+
T Consensus 661 i~~~~~~A~~~a 672 (733)
T TIGR01243 661 IEAVCREAAMAA 672 (733)
T ss_pred HHHHHHHHHHHH
Confidence 555666555543
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=1.4e-16 Score=166.43 Aligned_cols=210 Identities=18% Similarity=0.236 Sum_probs=145.7
Q ss_pred cccccHHHHHHHHHHHhc---------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 291 PVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~---------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
+++|.++.++++.++... ....|++|+||||||||++|+++++.+....+ +...+++.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~---~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY---IKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC---CCCCceEEecHH
Confidence 689998888877665321 23456899999999999999999998754221 123457888877
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccch
Q 004878 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~ 433 (725)
.+.. .+.|+.......+++.+ .+.||||||++.+...++. .+.+.++++.|...++. +.+++|++++..
T Consensus 101 ~l~~--~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVG--QYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQRDDLVVIFAGYKD 171 (287)
T ss_pred HHHH--HHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 6653 24455455556666543 3569999999999643221 12456788888888874 468899998877
Q ss_pred hhhhhhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCc--hhHHHHH
Q 004878 434 EHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP--DKAIDLV 510 (725)
Q Consensus 434 ~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp--~~ai~ll 510 (725)
....++..+|+|.+||. .|.|++++.+++.+|+..++.+. +..++++....+.....+......+. ..+..++
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~----~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ----QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh----cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 76677788999999994 89999999999999999888754 56678887777666544322212222 2334455
Q ss_pred HHHHHH
Q 004878 511 DEAGSR 516 (725)
Q Consensus 511 ~~a~~~ 516 (725)
+.+..+
T Consensus 248 e~~~~~ 253 (287)
T CHL00181 248 DRARMR 253 (287)
T ss_pred HHHHHH
Confidence 555443
No 45
>CHL00176 ftsH cell division protein; Validated
Probab=99.74 E-value=1.3e-16 Score=182.35 Aligned_cols=204 Identities=21% Similarity=0.270 Sum_probs=145.4
Q ss_pred cCCCcccccHHHHHHHHHHHh---c---------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 287 ELIDPVIGRETEIQRIIQILC---R---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~---~---------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
-+|++++|.++..+.+.+++. . ..+.++||+||||||||++|+++|.+. +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 468899999888777766542 1 235689999999999999999999987 667788887
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCC-CCcHHHHHHHhhhh----cCCCeEEEEe
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSL----GRGELQCIAS 429 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~-~~~~~~~~~L~~~l----~~~~v~vI~a 429 (725)
+.+.. ...|.-...++.+|..+....|+||||||+|.+......+.+.. .......+.|+..+ .+..+++|++
T Consensus 250 s~f~~--~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaa 327 (638)
T CHL00176 250 SEFVE--MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAA 327 (638)
T ss_pred HHHHH--HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEe
Confidence 76652 23344456788899999888899999999999975433221100 11122333333333 3457899999
Q ss_pred ccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhH
Q 004878 430 TTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~a 506 (725)
||..+ .+|+++.| || ..|.|+.|+.++|.+||+..+... ...++..+..++..+.+|. +.++
T Consensus 328 TN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-----~~~~d~~l~~lA~~t~G~s-----gaDL 392 (638)
T CHL00176 328 TNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-----KLSPDVSLELIARRTPGFS-----GADL 392 (638)
T ss_pred cCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-----ccchhHHHHHHHhcCCCCC-----HHHH
Confidence 99987 68899998 88 589999999999999999877641 1234555677777666553 3567
Q ss_pred HHHHHHHHHHH
Q 004878 507 IDLVDEAGSRA 517 (725)
Q Consensus 507 i~ll~~a~~~~ 517 (725)
..++++|+..+
T Consensus 393 ~~lvneAal~a 403 (638)
T CHL00176 393 ANLLNEAAILT 403 (638)
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 46
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1e-16 Score=180.50 Aligned_cols=204 Identities=22% Similarity=0.276 Sum_probs=149.8
Q ss_pred cCCCcccccHHHHHHHHHHH---hc---------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 287 ELIDPVIGRETEIQRIIQIL---CR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L---~~---------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
-.|+++.|.++..+.|.+++ .. +.+.++||+||||||||.||+++|.+. +.+++.++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 46899999998877777654 32 566889999999999999999999988 777888888
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh---c----CCCeEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---G----RGELQCI 427 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l---~----~~~v~vI 427 (725)
++++......| ..+++++|..++...|+|+||||||.+-.... +.+...+..+--+.|.+++ . ...++++
T Consensus 378 SEFvE~~~g~~--asrvr~lf~~ar~~aP~iifideida~~~~r~-G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 378 SEFVEMFVGVG--ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG-GKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHHHhcccc--hHHHHHHHHHhhccCCeEEEeccccccccccc-ccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 88875433333 67899999999999999999999999865442 1001112223333333333 2 4569999
Q ss_pred EeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCch
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
++||..+ .+|++|+| || ..|.++.|+...|.+|++...... +...++..+..++.++.++. ++
T Consensus 455 a~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----~~~~e~~dl~~~a~~t~gf~-----ga 520 (774)
T KOG0731|consen 455 AATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----KLDDEDVDLSKLASLTPGFS-----GA 520 (774)
T ss_pred eccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----CCCcchhhHHHHHhcCCCCc-----HH
Confidence 9999998 89999999 99 589999999999999998877633 22223444444666655553 46
Q ss_pred hHHHHHHHHHHHH
Q 004878 505 KAIDLVDEAGSRA 517 (725)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (725)
+..+++.+|...+
T Consensus 521 dl~n~~neaa~~a 533 (774)
T KOG0731|consen 521 DLANLCNEAALLA 533 (774)
T ss_pred HHHhhhhHHHHHH
Confidence 7777777776544
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-15 Score=176.98 Aligned_cols=179 Identities=18% Similarity=0.243 Sum_probs=126.6
Q ss_pred CcccccHHHHHHHHHHHhc---------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-
Q 004878 290 DPVIGRETEIQRIIQILCR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~---------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~- 359 (725)
..++||++.++.+...+.+ +...++||+||||||||.+|+.+|+.+ +..++.+||+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~ 527 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhccc
Confidence 3689999999999998874 223468999999999999999999988 45667777766431
Q ss_pred -------cc--cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--------
Q 004878 360 -------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (725)
Q Consensus 360 -------g~--~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------- 422 (725)
|. .+.|... -..+.+.+...+.+||||||||.+ ..++++.|+++++.+
T Consensus 528 ~~~~~LiG~~~gyvg~~~--~g~L~~~v~~~p~sVlllDEieka-------------~~~v~~~LLq~ld~G~ltd~~g~ 592 (758)
T PRK11034 528 HTVSRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNLLLQVMDNGTLTDNNGR 592 (758)
T ss_pred ccHHHHcCCCCCcccccc--cchHHHHHHhCCCcEEEeccHhhh-------------hHHHHHHHHHHHhcCeeecCCCc
Confidence 11 1222100 012223344566789999999999 457899999988754
Q ss_pred -----CeEEEEeccchhh---hh-----------------hhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHh-
Q 004878 423 -----ELQCIASTTQDEH---RT-----------------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA- 475 (725)
Q Consensus 423 -----~v~vI~at~~~~~---~~-----------------~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~- 475 (725)
++++|+|||...- .. ...+.|.|..|+. +|.|.+++.++..+|+...+.++..
T Consensus 593 ~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~ 672 (758)
T PRK11034 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQ 672 (758)
T ss_pred eecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3468888883310 00 0135689999995 8889999999999999876654421
Q ss_pred ----ccCCCCCHHHHHHHHHHh
Q 004878 476 ----HHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 476 ----~~~~~i~~~~l~~l~~~s 493 (725)
...+.++++++++++...
T Consensus 673 l~~~~i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 673 LDQKGVSLEVSQEARDWLAEKG 694 (758)
T ss_pred HHHCCCCceECHHHHHHHHHhC
Confidence 245678999999998754
No 48
>PLN03025 replication factor C subunit; Provisional
Probab=99.74 E-value=4.4e-17 Score=174.01 Aligned_cols=197 Identities=15% Similarity=0.221 Sum_probs=145.6
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l 357 (725)
.+|.+++||.+|++++|+++.+..|..++......|+||+||||+|||++|+++|+++..... ...+++++.+..
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~ 75 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDD 75 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeeccccc
Confidence 379999999999999999999999999988877889999999999999999999999843211 123444443321
Q ss_pred hccccccchHHHHHHHHHHHH---HhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccc
Q 004878 358 MAGAKERGELEARVTTLISEI---QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQ 432 (725)
Q Consensus 358 ~~g~~~~g~~~~~l~~~~~~~---~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~ 432 (725)
. ....+...++...... ......|++|||+|.+ ..+.++.|+..++. ....+|.++|.
T Consensus 76 ~----~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-------------t~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 76 R----GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-------------TSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred c----cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-------------CHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 1 1112222222221110 0123579999999999 33567888888874 44667777776
Q ss_pred hhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHH
Q 004878 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (725)
Q Consensus 433 ~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~ 511 (725)
.. .+.++|++|+..+.|.+|+.++....|+.+++ ..++.++++++++++..+.+.+ ..++..++
T Consensus 139 ~~-----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~----~egi~i~~~~l~~i~~~~~gDl------R~aln~Lq 202 (319)
T PLN03025 139 SS-----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVE----AEKVPYVPEGLEAIIFTADGDM------RQALNNLQ 202 (319)
T ss_pred cc-----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 54 56789999999999999999999999988876 4588999999999999888654 35666665
No 49
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=6.2e-17 Score=183.37 Aligned_cols=202 Identities=19% Similarity=0.201 Sum_probs=152.2
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCcc-c-----------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF-L----------- 344 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~~-l----------- 344 (725)
..|.+++||.+|+++||++..++.|...+...+..|. ||+||+|||||++|+.+|+.+........ -
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 4588999999999999999999999999988776675 89999999999999999999865321000 0
Q ss_pred --CCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 345 --~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
....++++|... .. -.+.++.+++.+. .++..|+||||+|.| ..+.+|.|++.
T Consensus 84 ~g~~~D~ieidaas------~~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-------------s~~a~NALLKt 142 (647)
T PRK07994 84 QGRFVDLIEIDAAS------RT--KVEDTRELLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKT 142 (647)
T ss_pred cCCCCCceeecccc------cC--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-------------CHHHHHHHHHH
Confidence 011234443221 01 1123455555543 235679999999999 44678999999
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. +.+.+|++|+... .+.+.+++||..+.|.+++.++....|..++.. .++.++++++..++..+++.
T Consensus 143 LEEPp~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 143 LEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGS 213 (647)
T ss_pred HHcCCCCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 997 5678888887765 677899999999999999999999988887763 37889999999999998876
Q ss_pred cccCCCchhHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~ 515 (725)
+ .+++.+++.+..
T Consensus 214 ~------R~Al~lldqaia 226 (647)
T PRK07994 214 M------RDALSLTDQAIA 226 (647)
T ss_pred H------HHHHHHHHHHHH
Confidence 4 467777766543
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6e-17 Score=176.71 Aligned_cols=198 Identities=22% Similarity=0.262 Sum_probs=158.0
Q ss_pred CCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
+++++-|..+..+.+.+++.- +...+||||||||||||.||-++|... +.+++.+..
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 567888888887777776643 445689999999999999999999887 788999988
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC----CCeEEEEec
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----GELQCIAST 430 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~----~~v~vI~at 430 (725)
.++. .+|.|..|+.++++|..++...|||||+||+|.+.+.++.+ +.+....+.|.|+.-|.. ..+.++++|
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Egl~GV~i~aaT 810 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEGLDGVYILAAT 810 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhccccccceEEEEEec
Confidence 8888 58999999999999999999999999999999998876542 334556677887776653 347889999
Q ss_pred cchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHH
Q 004878 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (725)
Q Consensus 431 ~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai 507 (725)
+.++ -+||+|.| |++ .|..+.|+..+|.+||+.+...+... ++-.++.++..+++|.+ .+.-
T Consensus 811 sRpd-----liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-----~~vdl~~~a~~T~g~tg-----ADlq 875 (952)
T KOG0735|consen 811 SRPD-----LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-----TDVDLECLAQKTDGFTG-----ADLQ 875 (952)
T ss_pred CCcc-----ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-----cccchHHHhhhcCCCch-----hhHH
Confidence 9887 78999999 994 79999999999999999988754221 34457788888888765 4444
Q ss_pred HHHHHHH
Q 004878 508 DLVDEAG 514 (725)
Q Consensus 508 ~ll~~a~ 514 (725)
.++-.|.
T Consensus 876 ~ll~~A~ 882 (952)
T KOG0735|consen 876 SLLYNAQ 882 (952)
T ss_pred HHHHHHH
Confidence 4554443
No 51
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.73 E-value=8e-17 Score=186.23 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=150.0
Q ss_pred hhhhhhhhcCCCcccccHHHHH---HHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 279 DLTARASEELIDPVIGRETEIQ---RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~---~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
+|.+++||.+|++++|+++.+. .+..++......+++|+|||||||||+|+.+++.+ +.+++.+++.
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna~ 86 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNAV 86 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehhh
Confidence 7999999999999999999884 57777777777899999999999999999999876 3344555442
Q ss_pred hhhccccccchHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchh
Q 004878 356 LLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~ 434 (725)
. .+. .++.+.+......... ....+|||||+|.+ ....++.|++.++++.+++|++|+...
T Consensus 87 ~--~~i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-------------n~~qQdaLL~~lE~g~IiLI~aTTenp 148 (725)
T PRK13341 87 L--AGV---KDLRAEVDRAKERLERHGKRTILFIDEVHRF-------------NKAQQDALLPWVENGTITLIGATTENP 148 (725)
T ss_pred h--hhh---HHHHHHHHHHHHHhhhcCCceEEEEeChhhC-------------CHHHHHHHHHHhcCceEEEEEecCCCh
Confidence 1 111 1122222222111111 34579999999999 335677888999999999999988765
Q ss_pred hhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHH
Q 004878 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEA---HHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (725)
Q Consensus 435 ~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~---~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~ 511 (725)
.+.+++++.+|+..+.+++++.+++..+++..+..... ..++.+++++++.++..+.+.+ .+++++|+
T Consensus 149 ---~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~------R~lln~Le 219 (725)
T PRK13341 149 ---YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA------RSLLNALE 219 (725)
T ss_pred ---HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH------HHHHHHHH
Confidence 34678999999999999999999999999988875432 3457899999999999876543 35666776
Q ss_pred HHHH
Q 004878 512 EAGS 515 (725)
Q Consensus 512 ~a~~ 515 (725)
.++.
T Consensus 220 ~a~~ 223 (725)
T PRK13341 220 LAVE 223 (725)
T ss_pred HHHH
Confidence 6553
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.4e-16 Score=176.54 Aligned_cols=201 Identities=20% Similarity=0.230 Sum_probs=146.6
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------- 343 (725)
.|.+++||..|++++|+++.+..|...+......+ +||+|||||||||+|+.+|+.+.....+..
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 46789999999999999999999999888766655 799999999999999999999854221110
Q ss_pred cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 344 l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
.....++.++... ..| ...++.+.+.+.. +...|+||||+|.+ ..+.++.|+..+
T Consensus 83 g~~~dv~el~aa~------~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-------------t~~a~~~LLk~L 141 (472)
T PRK14962 83 GTFMDVIELDAAS------NRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-------------TKEAFNALLKTL 141 (472)
T ss_pred CCCCccEEEeCcc------cCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHh-------------HHHHHHHHHHHH
Confidence 0011344444321 111 1224444444432 24569999999999 234677888888
Q ss_pred cC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 420 ~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+. +.+++|++|+... .+.+++.+||+.+.+.+++.++...+++..+. ..++.+++++++.++..+.+-+
T Consensus 142 E~p~~~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~----~egi~i~~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 142 EEPPSHVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAE----AEGIEIDREALSFIAKRASGGL 212 (472)
T ss_pred HhCCCcEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhCCCH
Confidence 86 6778887777543 57899999999999999999999998888776 3478999999999999876543
Q ss_pred ccCCCchhHHHHHHHHHH
Q 004878 498 SDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 498 ~~r~lp~~ai~ll~~a~~ 515 (725)
. .++..++.++.
T Consensus 213 R------~aln~Le~l~~ 224 (472)
T PRK14962 213 R------DALTMLEQVWK 224 (472)
T ss_pred H------HHHHHHHHHHH
Confidence 2 56677766554
No 53
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.72 E-value=1.2e-16 Score=165.96 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=122.6
Q ss_pred cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh-----cC
Q 004878 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-----SG 382 (725)
Q Consensus 308 ~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~-----~~ 382 (725)
.+.+..++|+||||||||.+|+++|.++ +..++.++..++. .++.|+.+..++.+|..+.. ..
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~--sk~vGEsEk~IR~~F~~A~~~a~~~~a 212 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELE--SENAGEPGKLIRQRYREAADIIKKKGK 212 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhh--cCcCCcHHHHHHHHHHHHHHHhhccCC
Confidence 3667788999999999999999999998 7888999999988 56889999999999998864 46
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCCcHHH-HHHHhhhhc----------------CCCeEEEEeccchhhhhhhcccHHH
Q 004878 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDI-SNLLKPSLG----------------RGELQCIASTTQDEHRTQFEKDKAL 445 (725)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~-~~~L~~~l~----------------~~~v~vI~at~~~~~~~~~~ld~~L 445 (725)
|+||||||||.+++.....+. .....+ ...|..++. ...+.||+|||.++ .++|+|
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~--tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpAL 285 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQY--TVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPL 285 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCc--chHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhH
Confidence 999999999999876532111 111222 234444321 35689999999987 899999
Q ss_pred Hc--ccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 004878 446 AR--RFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (725)
Q Consensus 446 ~~--Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~ 492 (725)
+| ||... +..|+.++|.+||+.+.+. ..++...+..++..
T Consensus 286 lRpGRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 286 IRDGRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVDT 327 (413)
T ss_pred cCCCCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHc
Confidence 99 99753 5689999999999988773 35566666655543
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.6e-16 Score=175.24 Aligned_cols=203 Identities=18% Similarity=0.224 Sum_probs=155.1
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCC-CceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~-~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------- 343 (725)
.|..+|||.+|+++||++..++.|...+...+.. ++||+||+|+||||+|+.+|+.+.....|..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 4678999999999999999999999888775554 6899999999999999999998854332211
Q ss_pred cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 344 l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
.....++++|..+- .+ ...++.+++.+.. ....|++|||+|.| ..+.+|.|+.++
T Consensus 82 ~~~~Dv~eidaas~------~~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-------------s~~A~NaLLK~L 140 (491)
T PRK14964 82 SNHPDVIEIDAASN------TS--VDDIKVILENSCYLPISSKFKVYIIDEVHML-------------SNSAFNALLKTL 140 (491)
T ss_pred cCCCCEEEEecccC------CC--HHHHHHHHHHHHhccccCCceEEEEeChHhC-------------CHHHHHHHHHHH
Confidence 12345666665321 11 1235566665542 34569999999999 345788899999
Q ss_pred cC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 420 ~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
++ ..+.+|.+|+... .+.+.+++||+.+.+.+++.++....+..++. ..++.++++++..+++.+++.+
T Consensus 141 EePp~~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~----~Egi~i~~eAL~lIa~~s~Gsl 211 (491)
T PRK14964 141 EEPAPHVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAK----KENIEHDEESLKLIAENSSGSM 211 (491)
T ss_pred hCCCCCeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 86 5677888777654 46678999999999999999999999988877 3478999999999999987654
Q ss_pred ccCCCchhHHHHHHHHHHHH
Q 004878 498 SDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 498 ~~r~lp~~ai~ll~~a~~~~ 517 (725)
.++..+++.++.+.
T Consensus 212 ------R~alslLdqli~y~ 225 (491)
T PRK14964 212 ------RNALFLLEQAAIYS 225 (491)
T ss_pred ------HHHHHHHHHHHHhc
Confidence 36778888777643
No 55
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.3e-16 Score=178.62 Aligned_cols=203 Identities=18% Similarity=0.183 Sum_probs=153.2
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 343 (725)
..|.+++||.+|+++||++..++.|...+...+..| +||+||+|||||++|+.+|+.+.....+..
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 358899999999999999999999999998877776 589999999999999999999864321110
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
.....++++|...- .. .+.++.+++.+.. ++..|++|||+|.| ..+.+|.|+..
T Consensus 84 ~g~~~d~~eidaas~----~~----v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-------------s~~a~naLLk~ 142 (509)
T PRK14958 84 EGRFPDLFEVDAASR----TK----VEDTRELLDNIPYAPTKGRFKVYLIDEVHML-------------SGHSFNALLKT 142 (509)
T ss_pred cCCCceEEEEccccc----CC----HHHHHHHHHHHhhccccCCcEEEEEEChHhc-------------CHHHHHHHHHH
Confidence 01123555554311 11 1224555554432 34569999999999 34578888889
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. ..+.+|.+|+... .+.+.+++||..+.|.+++.++....++.++.. .++.++++++..+++.+++.
T Consensus 143 LEepp~~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~Gs 213 (509)
T PRK14958 143 LEEPPSHVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANGS 213 (509)
T ss_pred HhccCCCeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc
Confidence 986 4677888777654 466789999999999999999988888887773 47889999999999988765
Q ss_pred cccCCCchhHHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~~ 516 (725)
+ .+++.+++.++.+
T Consensus 214 l------R~al~lLdq~ia~ 227 (509)
T PRK14958 214 V------RDALSLLDQSIAY 227 (509)
T ss_pred H------HHHHHHHHHHHhc
Confidence 3 4788888877654
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.72 E-value=8.4e-16 Score=164.90 Aligned_cols=189 Identities=20% Similarity=0.235 Sum_probs=135.7
Q ss_pred hhhhhhcCCCcccccHHHHHHHHHHHhc-----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 281 TARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 281 ~~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
..++||..|++++|+++.++.+..++.. ....+++|+||||+|||++|+.+|+++ +..+...+..
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~~ 85 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSGP 85 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecc
Confidence 5678999999999999999998877653 335689999999999999999999998 3334433322
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--------------
Q 004878 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-------------- 421 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-------------- 421 (725)
.+. .. ..+..++..+ ..+.||||||||.+.. ...+.|...++.
T Consensus 86 ~~~----~~----~~l~~~l~~l--~~~~vl~IDEi~~l~~-------------~~~e~l~~~~e~~~~~~~l~~~~~~~ 142 (328)
T PRK00080 86 ALE----KP----GDLAAILTNL--EEGDVLFIDEIHRLSP-------------VVEEILYPAMEDFRLDIMIGKGPAAR 142 (328)
T ss_pred ccc----Ch----HHHHHHHHhc--ccCCEEEEecHhhcch-------------HHHHHHHHHHHhcceeeeeccCcccc
Confidence 111 11 1233333332 3467999999999931 233334443332
Q ss_pred ------CCeEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhh
Q 004878 422 ------GELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 422 ------~~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~ 494 (725)
..+.+|++|+... .++++|++|| ..+.+++|+.+++.+|++..... .++.++++++..+++.+.
T Consensus 143 ~~~~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~ 213 (328)
T PRK00080 143 SIRLDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSR 213 (328)
T ss_pred ceeecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcC
Confidence 2357788888765 6788999999 57899999999999999877763 478899999999999888
Q ss_pred hhcccCCCchhHHHHHHHHHHHH
Q 004878 495 RYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 495 ~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
++ |..+..+++.+..++
T Consensus 214 G~------pR~a~~~l~~~~~~a 230 (328)
T PRK00080 214 GT------PRIANRLLRRVRDFA 230 (328)
T ss_pred CC------chHHHHHHHHHHHHH
Confidence 75 345666666554433
No 57
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2e-16 Score=168.64 Aligned_cols=203 Identities=21% Similarity=0.256 Sum_probs=159.3
Q ss_pred hhcCCCcccccHHHHHHHHHHH------------hcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 285 SEELIDPVIGRETEIQRIIQIL------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 285 ~~~~l~~liG~~~~i~~l~~~L------------~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
++-.++++-|.+...+.+.+++ .+.....+||.||||+|||.|++++|.+. +..++.+
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~i 217 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFFNI 217 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEeec
Confidence 4456789999777776666643 12455689999999999999999999998 7788888
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHH-HHHHHhhhh-----cCCCeEE
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD-ISNLLKPSL-----GRGELQC 426 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~-~~~~L~~~l-----~~~~v~v 426 (725)
..+.+. .++.|+.+..++.+|.-++..+|.|+||||+|.++.+...+.. +.... -...|.+.. ...++++
T Consensus 218 SassLt--sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~--e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 218 SASSLT--SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEH--ESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred cHHHhh--hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCccc--ccchhhhhHHHhhhccccCCCCCeEEE
Confidence 888777 5789999999999999999999999999999999987643211 11211 222333322 2467999
Q ss_pred EEeccchhhhhhhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchh
Q 004878 427 IASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
||+||.+. ++|.+++|||+ .+.|+.|+.+.|..++..++... +..+.+..+..+++.+++|.. .+
T Consensus 294 igaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~----~~~l~~~d~~~l~~~Tegysg-----sd 359 (428)
T KOG0740|consen 294 IGATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ----PNGLSDLDISLLAKVTEGYSG-----SD 359 (428)
T ss_pred EecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCccc-----cc
Confidence 99999986 89999999995 78999999999999999988743 567888999999999999875 55
Q ss_pred HHHHHHHHHH
Q 004878 506 AIDLVDEAGS 515 (725)
Q Consensus 506 ai~ll~~a~~ 515 (725)
..+++.+|..
T Consensus 360 i~~l~kea~~ 369 (428)
T KOG0740|consen 360 ITALCKEAAM 369 (428)
T ss_pred HHHHHHHhhc
Confidence 6666666554
No 58
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=1e-15 Score=151.68 Aligned_cols=193 Identities=20% Similarity=0.272 Sum_probs=141.4
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhc-----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
+.....||..|+++|||++..++|.-.++. ..--|+||+||||.||||||..+|.++ +..+-...
T Consensus 15 ~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~ts 84 (332)
T COG2255 15 KIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITS 84 (332)
T ss_pred hhhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEecc
Confidence 344567899999999999999888766654 334689999999999999999999999 33333322
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC------------
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------ 421 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------ 421 (725)
...+. ..|+ +-.++..++ .+.||||||||.+ ...+-.+|.+.|+.
T Consensus 85 Gp~le----K~gD----laaiLt~Le--~~DVLFIDEIHrl-------------~~~vEE~LYpaMEDf~lDI~IG~gp~ 141 (332)
T COG2255 85 GPALE----KPGD----LAAILTNLE--EGDVLFIDEIHRL-------------SPAVEEVLYPAMEDFRLDIIIGKGPA 141 (332)
T ss_pred ccccc----Chhh----HHHHHhcCC--cCCeEEEehhhhc-------------ChhHHHHhhhhhhheeEEEEEccCCc
Confidence 22221 1222 233333332 3569999999999 33466677777763
Q ss_pred --------CCeEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 004878 422 --------GELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (725)
Q Consensus 422 --------~~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~ 492 (725)
..+.+||+||... .+...|+.|| ....++.++.+|..+|+..-.. ..++.++++....+++.
T Consensus 142 Arsv~ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~----~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 142 ARSIRLDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK----ILGIEIDEEAALEIARR 212 (332)
T ss_pred cceEeccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHH----HhCCCCChHHHHHHHHh
Confidence 3468999999986 7788999999 5788999999999999977665 45889999999999887
Q ss_pred hhhhcccCCCchhHHHHHHHHHHHHHH
Q 004878 493 SARYISDRYLPDKAIDLVDEAGSRAHI 519 (725)
Q Consensus 493 s~~~i~~r~lp~~ai~ll~~a~~~~~~ 519 (725)
+.+. |.-|..++...-..+.+
T Consensus 213 SRGT------PRIAnRLLrRVRDfa~V 233 (332)
T COG2255 213 SRGT------PRIANRLLRRVRDFAQV 233 (332)
T ss_pred ccCC------cHHHHHHHHHHHHHHHH
Confidence 7653 56677777666555544
No 59
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.7e-16 Score=178.23 Aligned_cols=204 Identities=24% Similarity=0.333 Sum_probs=156.2
Q ss_pred hcCCCcccccHHHHHHHHHHHh-------------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 286 EELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.-.++++.|.+.....+.+.+. .+....+||+||||||||++|+++|.+. +.+++.+
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v 307 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISV 307 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEe
Confidence 3456677777776666665432 1344579999999999999999999987 8889999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEE
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIA 428 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~ 428 (725)
+...+. .++.|+.+..++.+|..+++..|+||||||+|.+++..+.+.+ +....+.+.|+..+. ...+.+|+
T Consensus 308 ~~~~l~--sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~--~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 308 KGSELL--SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eCHHHh--ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc--hHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 998766 5789999999999999999999999999999999876654211 122356666665553 35688999
Q ss_pred eccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHhhhhcccCCCch
Q 004878 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNC-KFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~-~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
+||.++ .+|+++.| ||+ .|.|+.|+.++|.+|++...... .. ...+-.++.+++.+.+|. ..
T Consensus 384 aTN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~----~~~~~~~~~~~~l~~~t~~~s-----ga 449 (494)
T COG0464 384 ATNRPD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK----KPPLAEDVDLEELAEITEGYS-----GA 449 (494)
T ss_pred cCCCcc-----ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc----CCcchhhhhHHHHHHHhcCCC-----HH
Confidence 999987 89999999 995 89999999999999998877633 22 234556677777666643 36
Q ss_pred hHHHHHHHHHHHH
Q 004878 505 KAIDLVDEAGSRA 517 (725)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (725)
++..++.+|+..+
T Consensus 450 di~~i~~ea~~~~ 462 (494)
T COG0464 450 DIAALVREAALEA 462 (494)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777776644
No 60
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.71 E-value=5e-16 Score=168.99 Aligned_cols=201 Identities=23% Similarity=0.286 Sum_probs=142.8
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-.++++.|.+++++++.+.+.. ..+.++||+||||||||++|++++..+ +..++.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecc
Confidence 3567899999999999887642 235679999999999999999999987 44556666
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh-------cCCCeEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQC 426 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v~v 426 (725)
...+. ..+.|+....++.+++.+....|+||||||+|.+........ .......+..+..++ ..+.+.+
T Consensus 189 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~--~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 189 GSELV--RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred hHHHH--HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC--CCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 55554 235566667788888888888899999999999975432211 112333344444333 1457899
Q ss_pred EEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCH-HHHHHHHHHhhhhcccCCC
Q 004878 427 IASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYL 502 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~-~~l~~l~~~s~~~i~~r~l 502 (725)
|++||..+ .+++++.+ || ..|.|+.|+.++|.+|++...... .+.+ ..+..++..+.+|.
T Consensus 265 I~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~------~l~~~~~~~~la~~t~g~s----- 328 (364)
T TIGR01242 265 IAATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM------KLAEDVDLEAIAKMTEGAS----- 328 (364)
T ss_pred EEecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC------CCCccCCHHHHHHHcCCCC-----
Confidence 99999876 78999987 88 489999999999999998766532 2222 23566777776653
Q ss_pred chhHHHHHHHHHHHH
Q 004878 503 PDKAIDLVDEAGSRA 517 (725)
Q Consensus 503 p~~ai~ll~~a~~~~ 517 (725)
+.+...++.+|...+
T Consensus 329 g~dl~~l~~~A~~~a 343 (364)
T TIGR01242 329 GADLKAICTEAGMFA 343 (364)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356666666666544
No 61
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.5e-16 Score=174.93 Aligned_cols=203 Identities=20% Similarity=0.216 Sum_probs=149.5
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCC----Ccc---------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV----PVF--------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~----p~~--------- 343 (725)
..|.+++||..|+++||++..++.|...+...+..+ +||+||+|+|||++|+.+|+.+..... |-.
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 468899999999999999999999999998866666 689999999999999999998853211 100
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
.....++++|.... .| .+.++.+++.+. .++..|+||||+|.+ ..+.++.|++.
T Consensus 84 ~~~~~dlieidaas~------~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-------------s~~a~naLLK~ 142 (546)
T PRK14957 84 NNSFIDLIEIDAASR------TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHML-------------SKQSFNALLKT 142 (546)
T ss_pred cCCCCceEEeecccc------cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhc-------------cHHHHHHHHHH
Confidence 00123444443211 11 112344444443 235679999999999 44678899999
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
+++ +.+.+|++|+... .+.+.+++||+.++|.+++.++....|+.++.+ .++.++++++..++..+++.
T Consensus 143 LEepp~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gd 213 (546)
T PRK14957 143 LEEPPEYVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGS 213 (546)
T ss_pred HhcCCCCceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 997 4677777776543 456779999999999999999999888887764 47889999999999998765
Q ss_pred cccCCCchhHHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~~ 516 (725)
+ .+++.+++.++..
T Consensus 214 l------R~alnlLek~i~~ 227 (546)
T PRK14957 214 L------RDALSLLDQAISF 227 (546)
T ss_pred H------HHHHHHHHHHHHh
Confidence 4 3666666665543
No 62
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=2.7e-16 Score=183.91 Aligned_cols=201 Identities=18% Similarity=0.136 Sum_probs=150.1
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------- 343 (725)
-|.++||+.+|++|||++..++.|...+...+..| +||+||+|||||++|+.|++.+.....+..
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47799999999999999999999999999877777 689999999999999999999964221110
Q ss_pred --cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhh
Q 004878 344 --LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (725)
Q Consensus 344 --l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (725)
.....++++|.... ... ..++.+.+.+. .....|+||||+|.| ..+.+|.|++
T Consensus 84 g~~~~~dv~eidaas~----~~V----d~iR~l~~~~~~~p~~~~~KV~IIDEad~l-------------t~~a~NaLLK 142 (824)
T PRK07764 84 GGPGSLDVTEIDAASH----GGV----DDARELRERAFFAPAESRYKIFIIDEAHMV-------------TPQGFNALLK 142 (824)
T ss_pred CCCCCCcEEEeccccc----CCH----HHHHHHHHHHHhchhcCCceEEEEechhhc-------------CHHHHHHHHH
Confidence 01234445443211 111 22333333322 245679999999999 4578899999
Q ss_pred hhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhh
Q 004878 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 418 ~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~ 495 (725)
+|++ ..+++|++|+..+ .+.+.|++||+.+.|..++.++...+|..++. ..++.++++++..++..+.+
T Consensus 143 ~LEEpP~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~----~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 143 IVEEPPEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICA----QEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHhCCCCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC
Confidence 9996 6678888776654 46688999999999999999999988887776 44788999999999998876
Q ss_pred hcccCCCchhHHHHHHHHHH
Q 004878 496 YISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 496 ~i~~r~lp~~ai~ll~~a~~ 515 (725)
.+ .+++.+|+..+.
T Consensus 214 dl------R~Al~eLEKLia 227 (824)
T PRK07764 214 SV------RDSLSVLDQLLA 227 (824)
T ss_pred CH------HHHHHHHHHHHh
Confidence 54 356666666553
No 63
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=2e-15 Score=160.73 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=127.9
Q ss_pred CCCcccccHHHHHHHHHHHhc-----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc
Q 004878 288 LIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~ 362 (725)
+|+++||+++++++|..++.. ...++++|+||||||||++++.+++.+ +..+...+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~---- 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALE---- 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhc----
Confidence 578999999999999888762 445679999999999999999999988 3333333222111
Q ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--------------------C
Q 004878 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------------G 422 (725)
Q Consensus 363 ~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--------------------~ 422 (725)
..+. +...+..+ ..+.+|||||+|.+.+ +..+.|..++++ .
T Consensus 68 ~~~~----l~~~l~~~--~~~~vl~iDEi~~l~~-------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 128 (305)
T TIGR00635 68 KPGD----LAAILTNL--EEGDVLFIDEIHRLSP-------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP 128 (305)
T ss_pred Cchh----HHHHHHhc--ccCCEEEEehHhhhCH-------------HHHHHhhHHHhhhheeeeeccCccccceeecCC
Confidence 1122 22222222 2457999999999932 234445544432 2
Q ss_pred CeEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCC
Q 004878 423 ELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501 (725)
Q Consensus 423 ~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~ 501 (725)
.+.+|++|+... .+++++++|| ..+.+++|+.+++.++++..+.. .++.+++++++.+++.+.++.
T Consensus 129 ~~~li~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~p---- 195 (305)
T TIGR00635 129 PFTLVGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGTP---- 195 (305)
T ss_pred CeEEEEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCCc----
Confidence 267788888765 6788999999 46799999999999999877763 467899999999999888763
Q ss_pred CchhHHHHHHHHHHH
Q 004878 502 LPDKAIDLVDEAGSR 516 (725)
Q Consensus 502 lp~~ai~ll~~a~~~ 516 (725)
..+..+++.+...
T Consensus 196 --R~~~~ll~~~~~~ 208 (305)
T TIGR00635 196 --RIANRLLRRVRDF 208 (305)
T ss_pred --chHHHHHHHHHHH
Confidence 4556666655433
No 64
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.8e-16 Score=176.21 Aligned_cols=200 Identities=18% Similarity=0.126 Sum_probs=148.9
Q ss_pred hhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc---------------
Q 004878 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--------------- 343 (725)
Q Consensus 280 l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~--------------- 343 (725)
|.+++||.+|++++|++..++.|...+...+..| +||+||+|+|||++|+.+|+.+...+.+..
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 5689999999999999999999999999887788 589999999999999999999864221110
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
.....++++|.... ... ..++.+.+.+. .....|++|||+|.| ..+.+|.|+..
T Consensus 83 ~~~~~dvieidaas~----~gv----d~iRel~~~~~~~P~~~~~KVvIIDEah~L-------------t~~A~NALLK~ 141 (584)
T PRK14952 83 GPGSIDVVELDAASH----GGV----DDTRELRDRAFYAPAQSRYRIFIVDEAHMV-------------TTAGFNALLKI 141 (584)
T ss_pred cCCCceEEEeccccc----cCH----HHHHHHHHHHHhhhhcCCceEEEEECCCcC-------------CHHHHHHHHHH
Confidence 01234555543221 111 22344444332 234679999999999 34688999999
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
|+. +.+++|++|+... .+.+.+++|++.+.|..++.++..+.|..++. ..++.++++++..++..+.+.
T Consensus 142 LEEpp~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~----~egi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 142 VEEPPEHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICE----QEGVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HhcCCCCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 997 5788888877665 67789999999999999999999888887776 347889999999998887764
Q ss_pred cccCCCchhHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~ 515 (725)
+ .+++.+|+..+.
T Consensus 213 l------R~aln~Ldql~~ 225 (584)
T PRK14952 213 P------RDTLSVLDQLLA 225 (584)
T ss_pred H------HHHHHHHHHHHh
Confidence 3 245555555443
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.71 E-value=1.5e-16 Score=176.07 Aligned_cols=180 Identities=20% Similarity=0.284 Sum_probs=129.0
Q ss_pred hhhcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEE
Q 004878 284 ASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (725)
Q Consensus 284 ~~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~ 350 (725)
...-+|+++.|.+++++++.+.+.. ..+.++||+||||||||++++++++.+.............++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 3455788999999999988886531 456789999999999999999999998432110000112233
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CC
Q 004878 351 SLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RG 422 (725)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~ 422 (725)
.+....+. .++.|+.+..++.+|+.+.. ..++||||||+|.++..++.+.. .+....+.+.|+..+. .+
T Consensus 256 ~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 256 NIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-SDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred eccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-chHHHHHHHHHHHHhcccccCC
Confidence 33334443 35678888889999888765 36899999999999876543211 1112233445554443 36
Q ss_pred CeEEEEeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHH
Q 004878 423 ELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (725)
Q Consensus 423 ~v~vI~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~ 471 (725)
.+++|++||..+ .+||++.| ||. .|+|+.|+.+++.+||+..+.
T Consensus 333 ~ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 333 NVIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ceEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 789999999987 79999998 995 799999999999999988764
No 66
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=1.3e-15 Score=159.12 Aligned_cols=209 Identities=20% Similarity=0.221 Sum_probs=146.0
Q ss_pred cccccHHHHHHHHHHHhc---------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 291 PVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~---------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
.++|.++..+++.++... ....+++|+||||||||++|+++++.+..... ....+++.+++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHH
Confidence 578988888887664321 12347999999999999999999998864321 113367888877
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccch
Q 004878 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~ 433 (725)
.+.. .+.|+....+..+++.+ .+.+|||||++.+.+.... .....++++.|...++. .++++|++++.+
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQRDDLVVILAGYKD 170 (284)
T ss_pred HHhH--hhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 6653 34455555566666654 3579999999998543211 12356778888888874 468899998877
Q ss_pred hhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhH---HHH
Q 004878 434 EHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA---IDL 509 (725)
Q Consensus 434 ~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~a---i~l 509 (725)
....+..++|+|.+|| ..|.|++++.+++..|++.++.+. +..++++++..+..+.... .....|+.+ .++
T Consensus 171 ~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~----~~~l~~~a~~~L~~~l~~~-~~~~~~GN~R~lrn~ 245 (284)
T TIGR02880 171 RMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ----QYRFSAEAEEAFADYIALR-RTQPHFANARSIRNA 245 (284)
T ss_pred HHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh----ccccCHHHHHHHHHHHHHh-CCCCCCChHHHHHHH
Confidence 6666777899999999 589999999999999999888754 4578888888777654422 122334433 344
Q ss_pred HHHHHHH
Q 004878 510 VDEAGSR 516 (725)
Q Consensus 510 l~~a~~~ 516 (725)
++.++.+
T Consensus 246 ve~~~~~ 252 (284)
T TIGR02880 246 IDRARLR 252 (284)
T ss_pred HHHHHHH
Confidence 5555443
No 67
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.6e-16 Score=178.11 Aligned_cols=203 Identities=20% Similarity=0.227 Sum_probs=150.1
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCC---------Cc-----
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEV---------PV----- 342 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~---------p~----- 342 (725)
.-|.+++||.+|+++||++..++.|..++...+..|. ||+||+|+||||+++.+|+.+..... |-
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 3578999999999999999999999999998777665 89999999999999999999864210 00
Q ss_pred ---c--cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHH
Q 004878 343 ---F--LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (725)
Q Consensus 343 ---~--l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (725)
+ .....++++|... ..+ .+.++.+++.+.. ++..|++|||+|.| ..+.+|
T Consensus 84 C~~i~~g~h~D~~eldaas------~~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-------------s~~a~N 142 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAAS------NRG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-------------TNTAFN 142 (618)
T ss_pred HHHHHcCCCCceeecCccc------ccC--HHHHHHHHHHHHhCcccCCceEEEEEChhhC-------------CHHHHH
Confidence 0 0011233433221 111 1235555555432 23569999999999 345688
Q ss_pred HHhhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 414 ~L~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
.|+..++. +.+.+|.+|+... .+.+.+++||..+.|..++.++....|+.++. ..++.++++++..+++
T Consensus 143 aLLKtLEEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~----~egi~ie~~AL~~La~ 213 (618)
T PRK14951 143 AMLKTLEEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA----AENVPAEPQALRLLAR 213 (618)
T ss_pred HHHHhcccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Confidence 88888886 4577777776654 45678999999999999999999999988776 3478999999999999
Q ss_pred HhhhhcccCCCchhHHHHHHHHHHH
Q 004878 492 LSARYISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 492 ~s~~~i~~r~lp~~ai~ll~~a~~~ 516 (725)
.+++.+ .+++.+++.++..
T Consensus 214 ~s~Gsl------R~al~lLdq~ia~ 232 (618)
T PRK14951 214 AARGSM------RDALSLTDQAIAF 232 (618)
T ss_pred HcCCCH------HHHHHHHHHHHHh
Confidence 887654 3667777766543
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.9e-16 Score=168.58 Aligned_cols=203 Identities=21% Similarity=0.181 Sum_probs=148.7
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc-cC----------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-LL---------- 345 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-l~---------- 345 (725)
..|.+++||..|++++|++..++.+...+...+..| +||+||+|+|||++|+.+++.+........ ..
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 468999999999999999999999999988866666 489999999999999999999853111100 00
Q ss_pred ---CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 346 ---~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
...++.++... .. ....++.+++.+.. +...|++|||+|.+ ..+.++.|+..
T Consensus 84 ~~~~~d~~~~~~~~-------~~-~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-------------~~~a~naLLk~ 142 (363)
T PRK14961 84 KGLCLDLIEIDAAS-------RT-KVEEMREILDNIYYSPSKSRFKVYLIDEVHML-------------SRHSFNALLKT 142 (363)
T ss_pred cCCCCceEEecccc-------cC-CHHHHHHHHHHHhcCcccCCceEEEEEChhhc-------------CHHHHHHHHHH
Confidence 11233333211 01 12335555555432 23469999999999 33567778888
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. +.+.+|.+|+... .+.+++.+||..+.+.+|+.++..++|+..++. .++.+++++++.++..+.+.
T Consensus 143 lEe~~~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G~ 213 (363)
T PRK14961 143 LEEPPQHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHGS 213 (363)
T ss_pred HhcCCCCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 875 4567777776554 577899999999999999999999999887764 36789999999999988754
Q ss_pred cccCCCchhHHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~~ 516 (725)
. .+++.+++.++..
T Consensus 214 ~------R~al~~l~~~~~~ 227 (363)
T PRK14961 214 M------RDALNLLEHAINL 227 (363)
T ss_pred H------HHHHHHHHHHHHh
Confidence 3 4688888877653
No 69
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.1e-16 Score=149.74 Aligned_cols=207 Identities=19% Similarity=0.259 Sum_probs=150.8
Q ss_pred hhhhhcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCe
Q 004878 282 ARASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (725)
Q Consensus 282 ~~~~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~ 348 (725)
+++-..+++-+-|.+.+++.+.+++.- ..+.++|||||||+|||.+|+++|+.. .+.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~ 208 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCT 208 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceE
Confidence 333334444455567777777665432 556789999999999999999999886 788
Q ss_pred EEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------C
Q 004878 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------R 421 (725)
Q Consensus 349 l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~ 421 (725)
++.++.++++ .++.|+=...++.+|-.++.+.|+|+|.||||.+-.+...+ ++++..+++..++.+++ .
T Consensus 209 firvsgselv--qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~--~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 209 FIRVSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVES--GSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred EEEechHHHH--HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccC--CCCccHHHHHHHHHHHHhccccccc
Confidence 9999988887 46777777778999999999999999999999995443332 22456677777776665 4
Q ss_pred CCeEEEEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcc
Q 004878 422 GELQCIASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (725)
Q Consensus 422 ~~v~vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~ 498 (725)
.++.+|.+||..+ -+||+|.| |. ..|+|++|+.+.|.+||+-...+.....+++ +..+++...+..
T Consensus 285 knikvimatnrid-----ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~-----l~kiaekm~gas- 353 (404)
T KOG0728|consen 285 KNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN-----LRKIAEKMPGAS- 353 (404)
T ss_pred cceEEEEeccccc-----cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC-----HHHHHHhCCCCc-
Confidence 6789999999987 78999999 88 5899999999999999988777654444443 233443333222
Q ss_pred cCCCchhHHHHHHHHHHHH
Q 004878 499 DRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 499 ~r~lp~~ai~ll~~a~~~~ 517 (725)
....-.++.+|+.++
T Consensus 354 ----gaevk~vcteagm~a 368 (404)
T KOG0728|consen 354 ----GAEVKGVCTEAGMYA 368 (404)
T ss_pred ----cchhhhhhhhhhHHH
Confidence 134445566666554
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=5.8e-16 Score=172.24 Aligned_cols=205 Identities=20% Similarity=0.225 Sum_probs=153.7
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCC-CCCceEEcCCCChHHHHHHHHHHHHHhcCC--------Ccc----
Q 004878 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEV--------PVF---- 343 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~-~~~iLL~Gp~G~GKT~la~~la~~l~~~~~--------p~~---- 343 (725)
..+|.+++||..|++++|++..++.|...+...+ ..++||+||+|||||++|+.+|+.+..... |-.
T Consensus 8 y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~ 87 (507)
T PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN 87 (507)
T ss_pred ccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH
Confidence 3678899999999999999999999998776644 457899999999999999999999854211 000
Q ss_pred ------cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHH
Q 004878 344 ------LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (725)
Q Consensus 344 ------l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (725)
.....++++|... ..+ ...++.+++.+.. +...|++|||+|.+ ....++
T Consensus 88 C~~i~~~~h~Dv~eidaas------~~~--vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-------------s~~a~n 146 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAAS------KTS--VDDIRRIIESAEYKPLQGKHKIFIIDEVHML-------------SKGAFN 146 (507)
T ss_pred HHHHhcCCCCcEEEeeccC------CCC--HHHHHHHHHHHHhccccCCcEEEEEEChhhc-------------CHHHHH
Confidence 0112344444321 111 2335666666543 34579999999999 335678
Q ss_pred HHhhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 414 ~L~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
.|+..++. ..+++|.+|+... .+.+.+.+||+.+++.+++.++...+++.+++ ..++.++++++..++.
T Consensus 147 aLLk~LEepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~----~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 147 ALLKTLEEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITK----QENLKTDIEALRIIAY 217 (507)
T ss_pred HHHHHHhhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Confidence 88888886 4577777776654 56789999999999999999999999988887 3478899999999999
Q ss_pred HhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 492 LSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 492 ~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
.+++.. .+++.+++.++...
T Consensus 218 ~s~Gsl------R~al~~Ldkai~~~ 237 (507)
T PRK06645 218 KSEGSA------RDAVSILDQAASMS 237 (507)
T ss_pred HcCCCH------HHHHHHHHHHHHhh
Confidence 887654 47888888876654
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=1.4e-14 Score=173.08 Aligned_cols=181 Identities=19% Similarity=0.268 Sum_probs=126.0
Q ss_pred CcccccHHHHHHHHHHHhcC---------CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc
Q 004878 290 DPVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~---------~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g 360 (725)
..++|++..++.+...+.+. ....+||+||+|||||++|++|+..+... +..++.+|++.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-------~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-------EDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhhccc
Confidence 47999999999999988762 12357899999999999999999988432 456778887664321
Q ss_pred c----------cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------
Q 004878 361 A----------KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (725)
Q Consensus 361 ~----------~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------- 423 (725)
. .+.|.-+ -..+.+.++..+..||+||||+.+ ..++++.|+++++.+.
T Consensus 638 ~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka-------------~~~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA-------------HPDVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred chHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC-------------CHHHHHHHHHHHhcCceecCCCe
Confidence 0 1111100 112334445566789999999988 5678999999887543
Q ss_pred ------eEEEEeccchhh--hh------------------hhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHh-
Q 004878 424 ------LQCIASTTQDEH--RT------------------QFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEA- 475 (725)
Q Consensus 424 ------v~vI~at~~~~~--~~------------------~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~- 475 (725)
.++|+|||...- .+ .-...|.|..|+ .++.+.+++.++..+|+.........
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 358888886210 00 112457888899 47888888999999998876654321
Q ss_pred --c--cCCCCCHHHHHHHHHH
Q 004878 476 --H--HNCKFTLEAINAAVHL 492 (725)
Q Consensus 476 --~--~~~~i~~~~l~~l~~~ 492 (725)
. ..+.+++++++++++.
T Consensus 783 l~~~~~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 783 LAERKITLELSDAALDFLAEA 803 (852)
T ss_pred HHHCCCeecCCHHHHHHHHHh
Confidence 2 2367899999999875
No 72
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4e-16 Score=160.39 Aligned_cols=183 Identities=21% Similarity=0.330 Sum_probs=144.3
Q ss_pred CCCcccccHHHHHHHHHHHhc--------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 288 LIDPVIGRETEIQRIIQILCR--------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~--------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
+|+++-|.++++..+.+.+-- +...+|||+||||||||.+|+++|++. +..++.++
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 577888888888888775321 455789999999999999999999998 77788888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhh-hh-------cC--CC
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP-SL-------GR--GE 423 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~-~l-------~~--~~ 423 (725)
++.+.. ++-|+-++.++.+|..+.+-.|+|+||||+|.+++.... ...++...++. ++ .+ ..
T Consensus 160 ~s~lt~--KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s------~dHEa~a~mK~eFM~~WDGl~s~~~~r 231 (386)
T KOG0737|consen 160 VSNLTS--KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS------TDHEATAMMKNEFMALWDGLSSKDSER 231 (386)
T ss_pred ccccch--hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc------chHHHHHHHHHHHHHHhccccCCCCce
Confidence 887774 666888899999999988889999999999999877632 23344444432 22 22 34
Q ss_pred eEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcc
Q 004878 424 LQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (725)
Q Consensus 424 v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~ 498 (725)
|.|+|+||.+. .+|.++.||+ +.+.|+.|+.++|.+||+-+++..... ++-.+..++..+.+|..
T Consensus 232 VlVlgATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-----~~vD~~~iA~~t~GySG 297 (386)
T KOG0737|consen 232 VLVLGATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-----DDVDLDEIAQMTEGYSG 297 (386)
T ss_pred EEEEeCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-----cccCHHHHHHhcCCCcH
Confidence 89999999986 8999999999 799999999999999999988744222 33346788889998865
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=7.6e-16 Score=173.55 Aligned_cols=203 Identities=18% Similarity=0.211 Sum_probs=151.6
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCC-CceEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~-~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 343 (725)
..|.+++||.+|+++||++..++.|...+..++.. .+||+||+|+|||++|+.|++.+........
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 35889999999999999999999999998876554 4699999999999999999999854221100
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
.....++++|... ..+ ...++.+++.+. ..+..|+||||+|.| ....++.|+..
T Consensus 84 ~g~~~DvlEidaAs------~~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~L-------------s~~A~NALLKt 142 (709)
T PRK08691 84 AGRYVDLLEIDAAS------NTG--IDNIREVLENAQYAPTAGKYKVYIIDEVHML-------------SKSAFNAMLKT 142 (709)
T ss_pred ccCccceEEEeccc------cCC--HHHHHHHHHHHHhhhhhCCcEEEEEECcccc-------------CHHHHHHHHHH
Confidence 0011234443221 111 133556655443 234579999999988 33567888888
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
|+. +.+.+|++|+... .+.+.+++||..+.|..++.++....|+.++. ..++.++++++..+++.+.+.
T Consensus 143 LEEPp~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~----kEgi~id~eAL~~Ia~~A~Gs 213 (709)
T PRK08691 143 LEEPPEHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLD----SEKIAYEPPALQLLGRAAAGS 213 (709)
T ss_pred HHhCCCCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHH----HcCCCcCHHHHHHHHHHhCCC
Confidence 885 5677888877654 56788999999999999999999999988777 447899999999999998865
Q ss_pred cccCCCchhHHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~~ 516 (725)
+ .+++.+++.++.+
T Consensus 214 l------RdAlnLLDqaia~ 227 (709)
T PRK08691 214 M------RDALSLLDQAIAL 227 (709)
T ss_pred H------HHHHHHHHHHHHh
Confidence 4 4778888877764
No 74
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.2e-16 Score=149.41 Aligned_cols=147 Identities=20% Similarity=0.305 Sum_probs=120.6
Q ss_pred cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEE
Q 004878 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILF 387 (725)
Q Consensus 308 ~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~ 387 (725)
-..++++|+|||||||||.|++++|+.. ...++.+..++++ .++.|+=...++++|..++.+.|+|+|
T Consensus 186 idpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlakenapsiif 253 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKENAPSIIF 253 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhccCCcEEE
Confidence 3678899999999999999999999876 4566777777776 456666667799999999999999999
Q ss_pred EccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC-------CCeEEEEeccchhhhhhhcccHHHHc--cc-ceEEecCC
Q 004878 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-------GELQCIASTTQDEHRTQFEKDKALAR--RF-QPVLISEP 457 (725)
Q Consensus 388 IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-------~~v~vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~P 457 (725)
|||+|.+.-+.-..+. +...+++.+|..++.+ .++.+|.+||..+ .+||+|.| |+ ..|+|+.|
T Consensus 254 ideidaiatkrfdaqt--gadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 254 IDEIDAIATKRFDAQT--GADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred eehhhhHhhhhccccc--cccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCC
Confidence 9999999754322211 3467888888888763 4689999999987 89999999 88 58999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 004878 458 SQEDAVRILLGLREKY 473 (725)
Q Consensus 458 s~ee~~~IL~~~~~~~ 473 (725)
+..+++-++..+..+.
T Consensus 327 drrqkrlvf~titskm 342 (408)
T KOG0727|consen 327 DRRQKRLVFSTITSKM 342 (408)
T ss_pred chhhhhhhHHhhhhcc
Confidence 9999999998888755
No 75
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.2e-15 Score=171.53 Aligned_cols=200 Identities=20% Similarity=0.227 Sum_probs=146.8
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCC-CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~-~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 343 (725)
.+|.+++||..|+++||++..++.|...+...+ ..++||+||+|+|||++|+.||+.+.....+..
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 378999999999999999999999999888754 567789999999999999999999864211100
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
.....++++|... ..+ ...++.+.+.+. .....|+||||+|.| ..+.++.|+++
T Consensus 84 ~g~hpDv~eId~a~------~~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-------------t~~a~naLLk~ 142 (624)
T PRK14959 84 QGMHVDVVEIDGAS------NRG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-------------TREAFNALLKT 142 (624)
T ss_pred cCCCCceEEEeccc------ccC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhC-------------CHHHHHHHHHH
Confidence 0112344444211 111 122333333332 234679999999999 34567888889
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. +.+++|++|+... .+.+.+++||+.+.|..++.++...+|+.++. ..++.+++++++.+++++.+.
T Consensus 143 LEEP~~~~ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~----~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 143 LEEPPARVTFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLG----REGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred hhccCCCEEEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 985 5678888877654 45578999999999999999999999987766 347789999999999988765
Q ss_pred cccCCCchhHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEA 513 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a 513 (725)
+ .+++.+++.+
T Consensus 214 l------R~Al~lLeql 224 (624)
T PRK14959 214 V------RDSMSLLGQV 224 (624)
T ss_pred H------HHHHHHHHHH
Confidence 4 3667777654
No 76
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.67 E-value=1.1e-15 Score=172.85 Aligned_cols=214 Identities=21% Similarity=0.273 Sum_probs=150.6
Q ss_pred hhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 276 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
...+|.+++|+..|++++|+++.++.+...+......++||+||||||||++|+.+++...+.....+..+..++.+||.
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 45699999999999999999999999998888777889999999999999999999887643221112224677888875
Q ss_pred hhhccccc-----cchHHHHH-------------HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhh
Q 004878 356 LLMAGAKE-----RGELEARV-------------TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (725)
Q Consensus 356 ~l~~g~~~-----~g~~~~~l-------------~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (725)
........ .+....-+ ......+....+.+|||||++.| ..+.++.|+.
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-------------~~~~q~~LL~ 197 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-------------HPVQMNKLLK 197 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-------------CHHHHHHHHH
Confidence 32100000 00000000 00001122345679999999999 4567777777
Q ss_pred hhcCC------------------------------CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHH
Q 004878 418 SLGRG------------------------------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (725)
Q Consensus 418 ~l~~~------------------------------~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~ 467 (725)
.++.+ .+++|++|+... ..+++++++||..|.+++++.+++..|++
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p----~~L~paLrsR~~~I~f~pL~~eei~~Il~ 273 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP----EEIPPALRSRCVEIFFRPLLDEEIKEIAK 273 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc----ccCChHHhhhhheeeCCCCCHHHHHHHHH
Confidence 66532 246777766543 26889999999999999999999999998
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 468 GLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 468 ~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
..+++ .++.+++++++.+..++.. ...+.++++.++..+
T Consensus 274 ~~a~k----~~i~is~~al~~I~~y~~n-------~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 274 NAAEK----IGINLEKHALELIVKYASN-------GREAVNIVQLAAGIA 312 (531)
T ss_pred HHHHH----cCCCcCHHHHHHHHHhhhh-------HHHHHHHHHHHHHHH
Confidence 88774 4678999999887765431 246777887777544
No 77
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.66 E-value=2.2e-15 Score=167.13 Aligned_cols=226 Identities=17% Similarity=0.186 Sum_probs=133.8
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHH
Q 004878 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQED 461 (725)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee 461 (725)
.+.|+++.|+|.++... .....+.|+....-..++.+||.+.+. .+.+.|.+-+..++++.|+.+|
T Consensus 81 ~~~~~vl~d~h~~~~~~-------~~~r~l~~l~~~~~~~~~~~i~~~~~~-------~~p~el~~~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLNDI-------SISRKLRNLSRILKTQPKTIIIIASEL-------NIPKELKDLITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcch-------HHHHHHHHHHHHHHhCCCEEEEEcCCC-------CCCHHHHhceeEEeecCcCHHH
Confidence 36899999999997321 111223333332333455555554332 4667788777889999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHH
Q 004878 462 AVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYW 541 (725)
Q Consensus 462 ~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 541 (725)
+..+++.+.. ..++.++++.++.+++.+.+... .++..++..+.... ..... ++.
T Consensus 147 i~~~l~~~~~----~~~~~~~~~~~~~l~~~~~gls~-----~~~~~~~~~~~~~~----~~~~~-----------~~~- 201 (489)
T CHL00195 147 IKKELTRLIK----SLNIKIDSELLENLTRACQGLSL-----ERIRRVLSKIIATY----KTIDE-----------NSI- 201 (489)
T ss_pred HHHHHHHHHH----hcCCCCCHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHc----CCCCh-----------hhH-
Confidence 9999977765 34667899999999988876532 33444443322210 00000 000
Q ss_pred HHHHHHHHhHHHHHhcccccchhhhccCCcchHHHhccCCCCCCCCCCCccCHHHHHHHHHhh--hCCChhhccHHHHHH
Q 004878 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW--SGIPVQQITADERML 619 (725)
Q Consensus 542 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~v~~~~--tgip~~~l~~~~~~~ 619 (725)
..+...+. ..+... ........++++.++
T Consensus 202 ---~~i~~~k~----------------------------------------------q~~~~~~~le~~~~~~~~~dvgG 232 (489)
T CHL00195 202 ---PLILEEKK----------------------------------------------QIISQTEILEFYSVNEKISDIGG 232 (489)
T ss_pred ---HHHHHHHH----------------------------------------------HHHhhhccccccCCCCCHHHhcC
Confidence 00000000 000000 000011234455555
Q ss_pred HHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
+..+++.|.++. .. ......+.|+..|+ |+|||||||||||++||+||+++ +.+|+++|++++.
T Consensus 233 l~~lK~~l~~~~-------~~--~~~~~~~~gl~~pk----GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~ 296 (489)
T CHL00195 233 LDNLKDWLKKRS-------TS--FSKQASNYGLPTPR----GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLF 296 (489)
T ss_pred HHHHHHHHHHHH-------HH--hhHHHHhcCCCCCc----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhc
Confidence 666665554211 11 12233456777664 99999999999999999999998 7899999998776
Q ss_pred chhhHhHhhcCCCccccccccccc
Q 004878 700 ERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 700 ~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
++ |||.+|..+|
T Consensus 297 ~~------------~vGese~~l~ 308 (489)
T CHL00195 297 GG------------IVGESESRMR 308 (489)
T ss_pred cc------------ccChHHHHHH
Confidence 54 8998887765
No 78
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=3e-15 Score=160.11 Aligned_cols=186 Identities=16% Similarity=0.207 Sum_probs=137.0
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceE-EcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL-LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL-~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
...|.+++||.+|++++|+++....+..++......+++| +||+|+|||++++++++.+ +..++.+++.
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~ 77 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGS 77 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccC
Confidence 3578999999999999999999999999998876667766 8999999999999999987 3455666654
Q ss_pred hhhccccccchHHHHHHHHHHHHH-hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccc
Q 004878 356 LLMAGAKERGELEARVTTLISEIQ-KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQ 432 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~~~~~~~-~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~ 432 (725)
. +. .......+........ ...+.+|+|||+|.+. ..+.++.|+.+++. +.+.+|.+++.
T Consensus 78 ~---~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~------------~~~~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 78 D---CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG------------LADAQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred c---cc--HHHHHHHHHHHHHhhcccCCCeEEEEECccccc------------CHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 3 11 1122222333222221 1346799999999881 12355667776764 56788888876
Q ss_pred hhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHH---hccCCCCCHHHHHHHHHHhh
Q 004878 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE---AHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 433 ~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~---~~~~~~i~~~~l~~l~~~s~ 494 (725)
.. .+.+++++||..+.++.|+.+++..+++.+..+.. ...++.++++++..++..+.
T Consensus 141 ~~-----~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 141 KN-----GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred hh-----hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 54 67899999999999999999999988887655542 24578899999888887554
No 79
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=3.5e-15 Score=166.02 Aligned_cols=203 Identities=22% Similarity=0.243 Sum_probs=151.5
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------- 343 (725)
.|.++|||.+|+++||++..++.|...+......|. ||+||+|+|||++|+.+++.+.....+..
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 477899999999999999999999999988776665 89999999999999999999854322110
Q ss_pred cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 344 l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
..+..++.++... .++ ...++.+++.+.. +...|++|||+|.+ ..++++.|+..+
T Consensus 83 ~~h~dv~eldaas------~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~L-------------t~~A~NALLK~L 141 (535)
T PRK08451 83 NRHIDIIEMDAAS------NRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHML-------------TKEAFNALLKTL 141 (535)
T ss_pred cCCCeEEEecccc------ccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHHHHHH
Confidence 0123344443211 111 1235555544332 23569999999999 456788999999
Q ss_pred cC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 420 ~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+. ..+.+|.+|+... .+.+++++|++.++|.+++.++....+..++. ..++.++++++..++..+.+.+
T Consensus 142 EEpp~~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~----~EGi~i~~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 142 EEPPSYVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILE----KEGVSYEPEALEILARSGNGSL 212 (535)
T ss_pred hhcCCceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCcH
Confidence 86 4577777776543 66789999999999999999999998888776 3478899999999999887654
Q ss_pred ccCCCchhHHHHHHHHHHHH
Q 004878 498 SDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 498 ~~r~lp~~ai~ll~~a~~~~ 517 (725)
.+++.+++.++...
T Consensus 213 ------R~alnlLdqai~~~ 226 (535)
T PRK08451 213 ------RDTLTLLDQAIIYC 226 (535)
T ss_pred ------HHHHHHHHHHHHhc
Confidence 47778887776653
No 80
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3e-15 Score=167.36 Aligned_cols=200 Identities=21% Similarity=0.242 Sum_probs=147.3
Q ss_pred hhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcC-CCcc------------cC
Q 004878 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAE-VPVF------------LL 345 (725)
Q Consensus 280 l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~-~p~~------------l~ 345 (725)
|.+++||..|++++|++..++.|..++......|. ||+||||+||||+|+.+++.+...+ .+.. ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 45889999999999999999999999988777776 9999999999999999999986321 1100 11
Q ss_pred CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC
Q 004878 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (725)
Q Consensus 346 ~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~ 421 (725)
...+++++... ..+ ...++.+.+.+.. ....|+||||+|.+ ..+.++.|+..++.
T Consensus 84 h~dv~el~~~~------~~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------s~~a~naLLk~LEe 142 (504)
T PRK14963 84 HPDVLEIDAAS------NNS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------SKSAFNALLKTLEE 142 (504)
T ss_pred CCceEEecccc------cCC--HHHHHHHHHHHhhccccCCCeEEEEECcccc-------------CHHHHHHHHHHHHh
Confidence 22345554321 111 1224444444432 34679999999988 33567778888876
Q ss_pred --CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhccc
Q 004878 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (725)
Q Consensus 422 --~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~ 499 (725)
..+++|.+++... .+.+.+.+||..+.|.+|+.++....|+.++. ..++.++++++..++..+++.+
T Consensus 143 p~~~t~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~----~egi~i~~~Al~~ia~~s~Gdl-- 211 (504)
T PRK14963 143 PPEHVIFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLE----AEGREAEPEALQLVARLADGAM-- 211 (504)
T ss_pred CCCCEEEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH--
Confidence 4567777776654 67789999999999999999999999988877 4478899999999999988664
Q ss_pred CCCchhHHHHHHHHHH
Q 004878 500 RYLPDKAIDLVDEAGS 515 (725)
Q Consensus 500 r~lp~~ai~ll~~a~~ 515 (725)
.+++..|+..+.
T Consensus 212 ----R~aln~Lekl~~ 223 (504)
T PRK14963 212 ----RDAESLLERLLA 223 (504)
T ss_pred ----HHHHHHHHHHHh
Confidence 366666666543
No 81
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.5e-15 Score=171.19 Aligned_cols=202 Identities=19% Similarity=0.214 Sum_probs=150.8
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCcc-c------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF-L------------ 344 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~~-l------------ 344 (725)
.|.+++||..|++++|++..++.|...+...+..|. ||+||+|+|||++|+.+++.+........ -
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 578999999999999999999999999988666664 89999999999999999999854211100 0
Q ss_pred -CCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 345 -~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
....++++|... .. -...++.+++.+.. ++..|+||||+|.+ ..+.+|.|++.+
T Consensus 85 ~~~~d~~ei~~~~------~~--~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-------------s~~a~naLLK~L 143 (527)
T PRK14969 85 GRFVDLIEVDAAS------NT--QVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-------------SKSAFNAMLKTL 143 (527)
T ss_pred CCCCceeEeeccc------cC--CHHHHHHHHHHHhhCcccCCceEEEEcCcccC-------------CHHHHHHHHHHH
Confidence 011344443221 11 12335666665543 34569999999999 345788898889
Q ss_pred cC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 420 ~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+. +.+.+|++|+... .+.+.+++||+.+.|..++.++....|..++. ..++.++++++..++..+++.+
T Consensus 144 Eepp~~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~----~egi~~~~~al~~la~~s~Gsl 214 (527)
T PRK14969 144 EEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILE----QENIPFDATALQLLARAAAGSM 214 (527)
T ss_pred hCCCCCEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 87 5678888777654 45567999999999999999999888887776 3478899999999999887654
Q ss_pred ccCCCchhHHHHHHHHHHH
Q 004878 498 SDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 498 ~~r~lp~~ai~ll~~a~~~ 516 (725)
.+++.+++.++..
T Consensus 215 ------r~al~lldqai~~ 227 (527)
T PRK14969 215 ------RDALSLLDQAIAY 227 (527)
T ss_pred ------HHHHHHHHHHHHh
Confidence 4778888776654
No 82
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.65 E-value=2.6e-15 Score=180.31 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=128.5
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-------------c-------------
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-------------K------------- 362 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~-------------~------------- 362 (725)
..+.++||+||||||||.||+++|.+. +.+++.++++.++... .
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 456789999999999999999999987 6777888877776321 0
Q ss_pred ---------------ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------
Q 004878 363 ---------------ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG------- 420 (725)
Q Consensus 363 ---------------~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~------- 420 (725)
..+.-..+++.+|+.|+...||||+|||||.+..... ..-..+.|+..|.
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCC
Confidence 0011123478899999999999999999999954311 1112344444443
Q ss_pred CCCeEEEEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHH--HHHHHHHHhhh
Q 004878 421 RGELQCIASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE--AINAAVHLSAR 495 (725)
Q Consensus 421 ~~~v~vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~--~l~~l~~~s~~ 495 (725)
...|+||||||.++ .+||+|.| || ..|.|+.|+..+|.+++..+.. ..++.+.+. .++.++..+.+
T Consensus 1770 ~~~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~----tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1770 TRNILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSY----TRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred CCCEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHh----hcCCCCCcccccHHHHHHhCCC
Confidence 24589999999998 89999999 99 5899999999999998876542 123333322 36677787777
Q ss_pred hcccCCCchhHHHHHHHHHHHHH
Q 004878 496 YISDRYLPDKAIDLVDEAGSRAH 518 (725)
Q Consensus 496 ~i~~r~lp~~ai~ll~~a~~~~~ 518 (725)
|.+ .+...++.+|+..+.
T Consensus 1841 fSG-----ADLanLvNEAaliAi 1858 (2281)
T CHL00206 1841 SNA-----RDLVALTNEALSISI 1858 (2281)
T ss_pred CCH-----HHHHHHHHHHHHHHH
Confidence 754 677888888877553
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.6e-15 Score=166.71 Aligned_cols=199 Identities=20% Similarity=0.249 Sum_probs=144.8
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCc--cc----------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FL---------- 344 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~--~l---------- 344 (725)
..|.+++||..|++++|++..++.+...+...+..+ +||+||+|+|||++|+.+|+.+....... ..
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 468899999999999999999999999987755554 78999999999999999999986422110 00
Q ss_pred --CCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 345 --~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
....++++|... ..+ ...++.+++.+.. .+..|++|||+|.| ....++.|+.+
T Consensus 84 ~~~h~DiieIdaas------~ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~L-------------t~~A~NaLLKt 142 (605)
T PRK05896 84 TNQSVDIVELDAAS------NNG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHML-------------STSAWNALLKT 142 (605)
T ss_pred cCCCCceEEecccc------ccC--HHHHHHHHHHHHhchhhCCcEEEEEechHhC-------------CHHHHHHHHHH
Confidence 012344443221 111 1224555554432 34569999999999 33567889999
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. +.+++|++|+... .+.+++++||+.+.|.+|+.++....|+..+.+ .++.++++++..++.++.+.
T Consensus 143 LEEPp~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 143 LEEPPKHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHhCCCcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc
Confidence 985 4577777776543 667899999999999999999999999887763 47789999999999988764
Q ss_pred cccCCCchhHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDE 512 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~ 512 (725)
+ ..++.+++.
T Consensus 214 l------R~AlnlLek 223 (605)
T PRK05896 214 L------RDGLSILDQ 223 (605)
T ss_pred H------HHHHHHHHH
Confidence 3 244555544
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=5.9e-15 Score=159.38 Aligned_cols=191 Identities=15% Similarity=0.254 Sum_probs=136.7
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~ 358 (725)
.|+++++|..|++++|+++.++++..++..+...+++|+||||||||++|+++++.+.... .+..++.+++..+.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhh
Confidence 6899999999999999999999999999887667899999999999999999999985321 12345566665432
Q ss_pred cccc-c----------cc-------hHHHHHHHHHHHHHh-----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHH
Q 004878 359 AGAK-E----------RG-------ELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (725)
Q Consensus 359 ~g~~-~----------~g-------~~~~~l~~~~~~~~~-----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L 415 (725)
.... . .+ .....++.++..... ....+|+|||+|.+ ..+.++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-------------~~~~~~~L 145 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-------------REDAQQAL 145 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-------------CHHHHHHH
Confidence 1100 0 00 012233444433322 23469999999988 22445667
Q ss_pred hhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 004878 416 KPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 416 ~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s 493 (725)
..+++. ....+|.+++... .+.+.|.+|+..+.+.+|+.++...+++..+. ..++.+++++++.++..+
T Consensus 146 ~~~le~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~----~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 146 RRIMEQYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAE----AEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHhccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHc
Confidence 776653 3355666665443 45678999999999999999999999988776 447789999999999887
Q ss_pred hhh
Q 004878 494 ARY 496 (725)
Q Consensus 494 ~~~ 496 (725)
.+.
T Consensus 217 ~gd 219 (337)
T PRK12402 217 GGD 219 (337)
T ss_pred CCC
Confidence 544
No 85
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.4e-15 Score=148.16 Aligned_cols=185 Identities=19% Similarity=0.285 Sum_probs=133.5
Q ss_pred CCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
.+.++-|.+.+++.|++.+-- +.+.++|+|||||+|||.+|++.|... +..++.+-.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLAg 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLAG 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhcc
Confidence 456888999999999886532 566789999999999999999999775 222222222
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCeEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCI 427 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~vI 427 (725)
..++ ..+.|+=...+++.|..++...|+|+||||+|.+-.+... + .+.+..+++..++.++. ...+.+|
T Consensus 239 PQLV--QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfD-S-ek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 239 PQLV--QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFD-S-EKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred hHHH--hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccc-c-cccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 2222 2345555677899999999999999999999988432211 1 12355677777776665 4678999
Q ss_pred EeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++||.-+ -+||+|.| |+ ..|+|+.|+.+.|..|++-..++.....+++ .+.+++.++.|
T Consensus 315 AATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvN-----feELaRsTddF 376 (424)
T KOG0652|consen 315 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVN-----FEELARSTDDF 376 (424)
T ss_pred eeccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCC-----HHHHhhccccc
Confidence 9999987 78999988 88 5899999999999999988777553333333 34455555544
No 86
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=4.9e-15 Score=168.26 Aligned_cols=203 Identities=19% Similarity=0.218 Sum_probs=151.1
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCC-CceEEcCCCChHHHHHHHHHHHHHhcC-----CCcc--------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAE-----VPVF-------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~-~iLL~Gp~G~GKT~la~~la~~l~~~~-----~p~~-------- 343 (725)
..|.++|||..|+++||++..++.|...+...+.. .+||+||+|+|||++|+.+|+.+.... .|..
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 56889999999999999999999999998886655 489999999999999999999985421 0100
Q ss_pred ------cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHH
Q 004878 344 ------LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (725)
Q Consensus 344 ------l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (725)
.....++++|... ..+ ...++.+++.+.. ....|+||||+|.+ ....+|
T Consensus 92 C~~i~~g~h~Dv~e~~a~s------~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~L-------------s~~a~n 150 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAAS------HTG--VDDIREIIESVRYRPVSARYKVYIIDEVHML-------------STAAFN 150 (598)
T ss_pred HHHHhcCCCCceEEecccc------cCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhC-------------CHHHHH
Confidence 0012233333221 111 2335666665543 34679999999999 345688
Q ss_pred HHhhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 414 ~L~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
.|+.+|++ ..+.+|.+|+... .+.+.+++||+.+.|..++.++....|+.++. ..++.++++++..++.
T Consensus 151 aLLKtLEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~----kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 151 ALLKTLEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAA----KEGVEVEDEALALIAR 221 (598)
T ss_pred HHHHHHHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Confidence 89999986 5577777776554 46678999999999999999999999988776 4478999999999999
Q ss_pred HhhhhcccCCCchhHHHHHHHHHHH
Q 004878 492 LSARYISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 492 ~s~~~i~~r~lp~~ai~ll~~a~~~ 516 (725)
.+.+.. ..++.+++.++..
T Consensus 222 ~a~Gdl------r~al~~Ldkli~~ 240 (598)
T PRK09111 222 AAEGSV------RDGLSLLDQAIAH 240 (598)
T ss_pred HcCCCH------HHHHHHHHHHHhh
Confidence 988654 4677777776543
No 87
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=2.8e-15 Score=168.79 Aligned_cols=184 Identities=15% Similarity=0.201 Sum_probs=139.3
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCC----CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~----~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
.+|+++++|.++++++|+++.+++|..++.... ..++||+||||+|||++|+++++.+ +..++.++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ieln 71 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELN 71 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEc
Confidence 379999999999999999999999999886532 5789999999999999999999998 56777776
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHh------cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQK------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~------~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI 427 (725)
.+.... ...+..++..+.. ..+.||+|||+|.+.+.. .....+.|..+++.....+|
T Consensus 72 asd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~---------d~~~~~aL~~~l~~~~~~iI 134 (482)
T PRK04195 72 ASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE---------DRGGARAILELIKKAKQPII 134 (482)
T ss_pred cccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc---------chhHHHHHHHHHHcCCCCEE
Confidence 543221 1123333333321 246799999999995321 22345566677777777777
Q ss_pred EeccchhhhhhhcccH-HHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 428 ASTTQDEHRTQFEKDK-ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~-~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+++|... .+.+ .+++|+..|.|++|+.+++..+|+.++. ..++.+++++++.++..+.+.+
T Consensus 135 li~n~~~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~----~egi~i~~eaL~~Ia~~s~GDl 196 (482)
T PRK04195 135 LTANDPY-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICR----KEGIECDDEALKEIAERSGGDL 196 (482)
T ss_pred EeccCcc-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 7777653 4444 7888999999999999999999988876 4578899999999999877544
No 88
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.64 E-value=1.3e-15 Score=146.25 Aligned_cols=195 Identities=16% Similarity=0.281 Sum_probs=145.4
Q ss_pred hhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeE
Q 004878 270 ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (725)
Q Consensus 270 ~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l 349 (725)
.+.-..+..+|.++|||..+.++||.++.+.+|..+...+..+|++|.||||+||||-+.+||+++....+. --+
T Consensus 7 ~~~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~k-----e~v 81 (333)
T KOG0991|consen 7 MSKSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYK-----EAV 81 (333)
T ss_pred CCccccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhh-----hHh
Confidence 344456777899999999999999999999999999999999999999999999999999999998532111 123
Q ss_pred EEeehhhhhccccccc--hHHHHHHHHHHHH-H--hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc--CC
Q 004878 350 MSLDMGLLMAGAKERG--ELEARVTTLISEI-Q--KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RG 422 (725)
Q Consensus 350 ~~ld~~~l~~g~~~~g--~~~~~l~~~~~~~-~--~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~ 422 (725)
.+++.+ ..+| -...+++.+-+.- . .+...|+++||+|.+ ...++..|+..++ ..
T Consensus 82 LELNAS------deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-------------T~gAQQAlRRtMEiyS~ 142 (333)
T KOG0991|consen 82 LELNAS------DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-------------TAGAQQALRRTMEIYSN 142 (333)
T ss_pred hhccCc------cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-------------hhHHHHHHHHHHHHHcc
Confidence 333332 2233 2333344332211 1 123469999999999 3346777887776 56
Q ss_pred CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 423 ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 423 ~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
..+++.+||..+ .+-..+.+||..+.+...+..+...-|..+.+ ..++.++++.++.++-.+++.+
T Consensus 143 ttRFalaCN~s~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k----~Ekv~yt~dgLeaiifta~GDM 208 (333)
T KOG0991|consen 143 TTRFALACNQSE-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAK----AEKVNYTDDGLEAIIFTAQGDM 208 (333)
T ss_pred cchhhhhhcchh-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHH----HhCCCCCcchHHHhhhhccchH
Confidence 778888888876 55678999999999999999887666665555 4588999999999998887655
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=7e-15 Score=167.57 Aligned_cols=201 Identities=22% Similarity=0.289 Sum_probs=148.6
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCcc-----------cC
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF-----------LL 345 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~~-----------l~ 345 (725)
..|.+++||..|++++|++..++.|...+...+..|. ||+||+|+|||++|+.+|+.+........ ..
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 5789999999999999999999999999988666664 89999999999999999999854321100 01
Q ss_pred CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC
Q 004878 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (725)
Q Consensus 346 ~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~ 421 (725)
...++.++.. ...+ ...++.+++.+.. +...|++|||+|.| ....++.|+..|+.
T Consensus 86 ~~Dvieidaa------sn~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-------------T~~A~NALLKtLEE 144 (725)
T PRK07133 86 SLDIIEMDAA------SNNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHML-------------SKSAFNALLKTLEE 144 (725)
T ss_pred CCcEEEEecc------ccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhC-------------CHHHHHHHHHHhhc
Confidence 1223333221 1111 2335666665543 34569999999999 33578889998986
Q ss_pred --CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhccc
Q 004878 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (725)
Q Consensus 422 --~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~ 499 (725)
+.+++|++|+... .+.+.+++||+.+.|.+++.++....|...+.+ .++.++++++..++..+.+.+
T Consensus 145 PP~~tifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gsl-- 213 (725)
T PRK07133 145 PPKHVIFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGSL-- 213 (725)
T ss_pred CCCceEEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH--
Confidence 4577777776554 667899999999999999999999999887763 368899999999999887643
Q ss_pred CCCchhHHHHHHHHH
Q 004878 500 RYLPDKAIDLVDEAG 514 (725)
Q Consensus 500 r~lp~~ai~ll~~a~ 514 (725)
..++.+++..+
T Consensus 214 ----R~AlslLekl~ 224 (725)
T PRK07133 214 ----RDALSIAEQVS 224 (725)
T ss_pred ----HHHHHHHHHHH
Confidence 35666666544
No 90
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6e-15 Score=167.57 Aligned_cols=201 Identities=19% Similarity=0.202 Sum_probs=148.8
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------- 343 (725)
-|..++||.+|++++|+++.++.|...+......| +||+||+|+|||++|+.+|+.+...+.+..
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 46789999999999999999999999998866666 678999999999999999999864321110
Q ss_pred cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 344 l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
.....++++|... .. -...++.+.+.+.. .+..|++|||+|.| ....+|.|+..+
T Consensus 85 g~~~dv~eidaas------~~--~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-------------t~~a~naLLKtL 143 (559)
T PRK05563 85 GSLMDVIEIDAAS------NN--GVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-------------STGAFNALLKTL 143 (559)
T ss_pred CCCCCeEEeeccc------cC--CHHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHHHHHh
Confidence 1123444544321 11 12335566665542 34679999999999 345788888888
Q ss_pred cC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 420 ~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+. ..+++|.+|+... .+.+.+++||+.+.|.+|+.++....|+.+++ ..++.++++++..++..+.+.+
T Consensus 144 Eepp~~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~----~egi~i~~~al~~ia~~s~G~~ 214 (559)
T PRK05563 144 EEPPAHVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILD----KEGIEYEDEALRLIARAAEGGM 214 (559)
T ss_pred cCCCCCeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH
Confidence 86 4567777766554 57789999999999999999999999888776 4478899999999998877543
Q ss_pred ccCCCchhHHHHHHHHHH
Q 004878 498 SDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 498 ~~r~lp~~ai~ll~~a~~ 515 (725)
.+++.+++.++.
T Consensus 215 ------R~al~~Ldq~~~ 226 (559)
T PRK05563 215 ------RDALSILDQAIS 226 (559)
T ss_pred ------HHHHHHHHHHHH
Confidence 356666666544
No 91
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-15 Score=149.19 Aligned_cols=200 Identities=21% Similarity=0.268 Sum_probs=151.6
Q ss_pred CCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
+..++-|..++++++.+++.. ..+.++|+|||||+|||.+|+++|++. +..++.+-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 456888999999999887543 556789999999999999999999876 677777777
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCeEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCI 427 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~vI 427 (725)
++++ .+|.|+=...++.+|+.++..+-+|+|+||||.+-++.-. +..++..+++..++.++. +|++.++
T Consensus 245 selv--qkyvgegarmvrelf~martkkaciiffdeidaiggarfd--dg~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 245 SELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFD--DGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCcccc--CCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 7777 4678887788999999998888999999999998554322 112456677777776665 6889999
Q ss_pred EeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHhhhhcccCCCc
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLP 503 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~-l~~l~~~s~~~i~~r~lp 503 (725)
.+||.++ .+||+|.| |+ ..|+|..|+.+.|..|++-..+.. .+..+. .+.++.+|.....
T Consensus 321 matnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaksm------sverdir~ellarlcpnstg----- 384 (435)
T KOG0729|consen 321 MATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM------SVERDIRFELLARLCPNSTG----- 384 (435)
T ss_pred eecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEecccc------ccccchhHHHHHhhCCCCcc-----
Confidence 9999998 89999999 88 589999999999999997655533 222222 3455666654332
Q ss_pred hhHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRA 517 (725)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (725)
.+...++.+|...+
T Consensus 385 aeirsvcteagmfa 398 (435)
T KOG0729|consen 385 AEIRSVCTEAGMFA 398 (435)
T ss_pred hHHHHHHHHhhHHH
Confidence 45566666666543
No 92
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.3e-15 Score=167.05 Aligned_cols=205 Identities=21% Similarity=0.275 Sum_probs=145.4
Q ss_pred cCCCcccccHHHHHHHHHHH---hc---------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 287 ELIDPVIGRETEIQRIIQIL---CR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L---~~---------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
-+|.++.|.++..+.+.+++ .. +-+.+++|+||||||||.||+++|.+. +.+++.++.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 46889999998887777654 32 345789999999999999999999887 555566666
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHH---HHHHHhhhhc----CCCeEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD---ISNLLKPSLG----RGELQCI 427 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~---~~~~L~~~l~----~~~v~vI 427 (725)
++++. .+.|-=..+++++|.+++++.|+|+||||||.+-..+..+.+ ++..+ ..|.|+.-+. +..+++|
T Consensus 217 S~FVe--mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~G--ggnderEQTLNQlLvEmDGF~~~~gvivi 292 (596)
T COG0465 217 SDFVE--MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLG--GGNDEREQTLNQLLVEMDGFGGNEGVIVI 292 (596)
T ss_pred hhhhh--hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCC--CCchHHHHHHHHHHhhhccCCCCCceEEE
Confidence 65552 233333567999999999999999999999998655543322 12222 3344433332 3468999
Q ss_pred EeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCch
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
++||.++ .+|++|.| || ..|.++.|+...|.+|++...+... ....++ +..+++.+.++.. .
T Consensus 293 aaTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~--l~~~Vd---l~~iAr~tpGfsG-----A 357 (596)
T COG0465 293 AATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP--LAEDVD---LKKIARGTPGFSG-----A 357 (596)
T ss_pred ecCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC--CCCcCC---HHHHhhhCCCccc-----c
Confidence 9999998 88999999 99 5899999999999999986555221 111122 3336666666654 6
Q ss_pred hHHHHHHHHHHHHHHh
Q 004878 505 KAIDLVDEAGSRAHIE 520 (725)
Q Consensus 505 ~ai~ll~~a~~~~~~~ 520 (725)
+..+++.+|...+...
T Consensus 358 dL~nl~NEAal~aar~ 373 (596)
T COG0465 358 DLANLLNEAALLAARR 373 (596)
T ss_pred hHhhhHHHHHHHHHHh
Confidence 7788888877655443
No 93
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=4.8e-15 Score=169.15 Aligned_cols=202 Identities=18% Similarity=0.171 Sum_probs=149.7
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------- 343 (725)
-|.+++||..|+++||+++.++.|...+......| +||+||+|+|||++++.+++.+...+.+..
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 47789999999999999999999999998876666 589999999999999999999864321100
Q ss_pred cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 344 l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
.....++++|... ..+ ...++.+.+.+.. ....|++|||+|.| ....+|.|+.+|
T Consensus 85 g~~~d~~eid~~s------~~~--v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-------------t~~a~naLLk~L 143 (576)
T PRK14965 85 GRSVDVFEIDGAS------NTG--VDDIRELRENVKYLPSRSRYKIFIIDEVHML-------------STNAFNALLKTL 143 (576)
T ss_pred CCCCCeeeeeccC------ccC--HHHHHHHHHHHHhccccCCceEEEEEChhhC-------------CHHHHHHHHHHH
Confidence 0012234443211 111 2235555555542 34569999999999 346789999999
Q ss_pred cC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 420 ~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+. ..+++|.+|+... .+.+.+++||+.++|..++.++....|..++. ..++.++++++..++..+.+.+
T Consensus 144 Eepp~~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~----~egi~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 144 EEPPPHVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIAD----QEGISISDAALALVARKGDGSM 214 (576)
T ss_pred HcCCCCeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCCH
Confidence 86 4677887777654 56789999999999999999998888887776 3478899999999999988654
Q ss_pred ccCCCchhHHHHHHHHHHH
Q 004878 498 SDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 498 ~~r~lp~~ai~ll~~a~~~ 516 (725)
.+++.+++.++.+
T Consensus 215 ------r~al~~Ldqliay 227 (576)
T PRK14965 215 ------RDSLSTLDQVLAF 227 (576)
T ss_pred ------HHHHHHHHHHHHh
Confidence 3566666665543
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.63 E-value=1.5e-14 Score=147.36 Aligned_cols=179 Identities=13% Similarity=0.144 Sum_probs=126.3
Q ss_pred CCCccc-c-cHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccc
Q 004878 288 LIDPVI-G-RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365 (725)
Q Consensus 288 ~l~~li-G-~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g 365 (725)
+||+++ | ....+..+.++......++++|+||+|||||||++++++.+... +..+.++++......
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~~----- 87 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAWF----- 87 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhhh-----
Confidence 355555 3 45566666666666666789999999999999999999987542 566667666543211
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHH
Q 004878 366 ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKAL 445 (725)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L 445 (725)
...+++...+. .+|+|||++.+.+.. .....+++++....++++..+|++++.+. ..+....|.|
T Consensus 88 -----~~~~~~~~~~~--dlliiDdi~~~~~~~-------~~~~~lf~l~n~~~e~g~~~li~ts~~~p-~~l~~~~~~L 152 (235)
T PRK08084 88 -----VPEVLEGMEQL--SLVCIDNIECIAGDE-------LWEMAIFDLYNRILESGRTRLLITGDRPP-RQLNLGLPDL 152 (235)
T ss_pred -----hHHHHHHhhhC--CEEEEeChhhhcCCH-------HHHHHHHHHHHHHHHcCCCeEEEeCCCCh-HHcCcccHHH
Confidence 11222222222 489999999984321 22445677888888888766666666443 2333467999
Q ss_pred Hccc---ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 446 ARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 446 ~~Rf---~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
++|| ..+.+.+|+.+++.++++..+. ..++.+++++++++++.+.+.+
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~----~~~~~l~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRAR----LRGFELPEDVGRFLLKRLDREM 203 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhhcCCH
Confidence 9999 6899999999999999977555 3478999999999999888654
No 95
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.62 E-value=1.3e-13 Score=163.56 Aligned_cols=184 Identities=16% Similarity=0.205 Sum_probs=129.2
Q ss_pred CcccccHHHHHHHHHHHhcC--------CC-CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc
Q 004878 290 DPVIGRETEIQRIIQILCRR--------TK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~--------~~-~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g 360 (725)
..++||++.+..+.+.+.+. ++ ..+||+||+|||||.+|++||+.+..+ ...++.+|++.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-------~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-------EQNLITINMSEFQEA 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-------CcceEEEeHHHhhhh
Confidence 47999999999999987541 11 247999999999999999999998532 456788888765311
Q ss_pred --------c--cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------
Q 004878 361 --------A--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (725)
Q Consensus 361 --------~--~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------- 423 (725)
. .+.|.-+. ..+.+.+++.+.+||+||||+.+ ..++.+.|.+++..+.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-------------~~~v~~~Llq~ld~g~l~d~~Gr 703 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-------------HPDVLELFYQVFDKGVMEDGEGR 703 (852)
T ss_pred hhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-------------CHHHHHHHHHHhhcceeecCCCc
Confidence 1 12221110 11234445677899999999977 5578889988887543
Q ss_pred ------eEEEEeccchh--hhh----------------h------hcccHHHHcccceEEecCCCHHHHHHHHHHHHHHH
Q 004878 424 ------LQCIASTTQDE--HRT----------------Q------FEKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (725)
Q Consensus 424 ------v~vI~at~~~~--~~~----------------~------~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~ 473 (725)
.++|.|+|... +.. . ....|+|.+|+.+|.|.+++.++..+|+...+...
T Consensus 704 ~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 704 EIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred EEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 57788877421 000 0 12468889999999999999999999998866553
Q ss_pred H----hc--cCCCCCHHHHHHHHHHhhh
Q 004878 474 E----AH--HNCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 474 ~----~~--~~~~i~~~~l~~l~~~s~~ 495 (725)
. .. ..+.++++++++++..+..
T Consensus 784 ~~rl~~~~gi~l~i~d~a~~~La~~g~~ 811 (852)
T TIGR03345 784 ARRLKENHGAELVYSEALVEHIVARCTE 811 (852)
T ss_pred HHHHHHhcCceEEECHHHHHHHHHHcCC
Confidence 2 22 3367899999999887643
No 96
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.2e-16 Score=153.33 Aligned_cols=168 Identities=26% Similarity=0.330 Sum_probs=132.9
Q ss_pred hhcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEE
Q 004878 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (725)
Q Consensus 285 ~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ 351 (725)
-..++.++-|.+.+++.+.+.+.- ..+.+++|||+||+|||.||+++|+.. ...++.
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SATFlR 249 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SATFLR 249 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chhhhh
Confidence 345667888889888888886532 566789999999999999999999875 334445
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCe
Q 004878 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGEL 424 (725)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v 424 (725)
+-.++++ .++.|+=...++.+|+.+..+.|+|+||||||.+-...... |+++..+++..++.+|+ ++.+
T Consensus 250 vvGseLi--QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds--~SggerEiQrtmLELLNQldGFdsrgDv 325 (440)
T KOG0726|consen 250 VVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDV 325 (440)
T ss_pred hhhHHHH--HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccC--CCccHHHHHHHHHHHHHhccCccccCCe
Confidence 5555665 35666667789999999999999999999999885433221 33567788888877775 5889
Q ss_pred EEEEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHH
Q 004878 425 QCIASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLRE 471 (725)
Q Consensus 425 ~vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~ 471 (725)
.||.+||..+ .+||+|.| |. ..|+|+.|+...+..|+.-...
T Consensus 326 KvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 326 KVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred EEEEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeec
Confidence 9999999988 89999999 88 5899999999999998865444
No 97
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.6e-14 Score=163.36 Aligned_cols=202 Identities=21% Similarity=0.181 Sum_probs=147.2
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 343 (725)
.-|..++||..|+++||++..+..|...+..+...| +||+||+|+|||++|+.+|+.+.....+..
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 346788999999999999999999999998866665 789999999999999999999864321110
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
.....++.+|.. ...+ ...++.+.+.+. ..+..|++|||+|.+ ....+|.|+..
T Consensus 84 ~~~~~dv~~idga------s~~~--vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-------------s~~a~naLLK~ 142 (563)
T PRK06647 84 NDNSLDVIEIDGA------SNTS--VQDVRQIKEEIMFPPASSRYRVYIIDEVHML-------------SNSAFNALLKT 142 (563)
T ss_pred cCCCCCeEEecCc------ccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhc-------------CHHHHHHHHHh
Confidence 001223333221 1011 122444444433 245679999999999 34577888888
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. ..+.+|++|+... .+.+++++||+.+.|.+++.++...+|+..+. ..++.++++++..++..+.+.
T Consensus 143 LEepp~~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~----~egi~id~eAl~lLa~~s~Gd 213 (563)
T PRK06647 143 IEEPPPYIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL----EDQIKYEDEALKWIAYKSTGS 213 (563)
T ss_pred hccCCCCEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 986 5677777776543 46689999999999999999999888887766 347889999999999988764
Q ss_pred cccCCCchhHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~ 515 (725)
+ ..++.+++..+.
T Consensus 214 l------R~alslLdklis 226 (563)
T PRK06647 214 V------RDAYTLFDQVVS 226 (563)
T ss_pred H------HHHHHHHHHHHh
Confidence 3 366667766544
No 98
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.61 E-value=4.6e-15 Score=162.96 Aligned_cols=203 Identities=20% Similarity=0.247 Sum_probs=156.9
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc------------c-
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------------L- 344 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~------------l- 344 (725)
.|-.+|||..|++++||+..++.|...+...+..| .||.||.|||||++|+.+|+.+...+.+.. .
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 46678999999999999999999999988755544 689999999999999999999865432210 0
Q ss_pred -CCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 345 -~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
....++++|..+ .. --+.++.+.+.+. .++..|.+|||+|.| ...+.|.|+..+
T Consensus 85 g~~~DviEiDaAS------n~--gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------S~~afNALLKTL 143 (515)
T COG2812 85 GSLIDVIEIDAAS------NT--GVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------SKQAFNALLKTL 143 (515)
T ss_pred CCcccchhhhhhh------cc--ChHHHHHHHHHhccCCccccceEEEEecHHhh-------------hHHHHHHHhccc
Confidence 012233333221 11 1123566666664 345679999999999 456789999888
Q ss_pred cCC--CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 420 GRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 420 ~~~--~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+.. .|.+|.+|+... .+.+.+.+||+...|...+.++....|..++. ..++.++++++..+++.+++-+
T Consensus 144 EEPP~hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~----~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 144 EEPPSHVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILD----KEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred ccCccCeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHH----hcCCccCHHHHHHHHHHcCCCh
Confidence 864 588888888876 78899999999999999999998888887777 5689999999999999998765
Q ss_pred ccCCCchhHHHHHHHHHHHH
Q 004878 498 SDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 498 ~~r~lp~~ai~ll~~a~~~~ 517 (725)
. ++..++|.+....
T Consensus 215 R------DalslLDq~i~~~ 228 (515)
T COG2812 215 R------DALSLLDQAIAFG 228 (515)
T ss_pred h------hHHHHHHHHHHcc
Confidence 4 7788888887764
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.4e-14 Score=159.12 Aligned_cols=202 Identities=19% Similarity=0.180 Sum_probs=145.3
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCc---cc----------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV---FL---------- 344 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~---~l---------- 344 (725)
-|.+++||..|++++|++..++.|...+...+..| +||+||+|+|||++|+.+|+.+....... ..
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 47889999999999999999999999998866666 88999999999999999999985421100 00
Q ss_pred ---------CCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHH
Q 004878 345 ---------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (725)
Q Consensus 345 ---------~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~ 411 (725)
....++.++.. ...+ .+.++.+.+.+.. ....|+||||+|.+ ..+.
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~------~~~~--id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-------------~~~~ 143 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAA------SNNS--VDDIRLLRENVRYGPQKGRYRVYIIDEVHML-------------SIAA 143 (397)
T ss_pred HHHHHHhcCCCCCeEeeccc------ccCC--HHHHHHHHHHHhhchhcCCeEEEEEeChhhC-------------CHHH
Confidence 01122222211 1111 2335555555532 34569999999999 2345
Q ss_pred HHHHhhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Q 004878 412 SNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (725)
Q Consensus 412 ~~~L~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l 489 (725)
++.|+.++++ +..++|.+++... .+.+++.+|++.+++.+++.++....++..++ ..++.+++++++.+
T Consensus 144 ~~~LLk~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~----~~g~~i~~~al~~l 214 (397)
T PRK14955 144 FNAFLKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICE----AEGISVDADALQLI 214 (397)
T ss_pred HHHHHHHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHH
Confidence 6778888886 3566666665433 56688999999999999999998888877776 34788999999999
Q ss_pred HHHhhhhcccCCCchhHHHHHHHHHHH
Q 004878 490 VHLSARYISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 490 ~~~s~~~i~~r~lp~~ai~ll~~a~~~ 516 (725)
+..+++.+ ..+...++..+..
T Consensus 215 ~~~s~g~l------r~a~~~L~kl~~~ 235 (397)
T PRK14955 215 GRKAQGSM------RDAQSILDQVIAF 235 (397)
T ss_pred HHHcCCCH------HHHHHHHHHHHHh
Confidence 99988654 3666777665554
No 100
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=4e-14 Score=156.99 Aligned_cols=202 Identities=18% Similarity=0.181 Sum_probs=145.1
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 343 (725)
..|.+++||.+|+++||++..+..+...+......+ +||+||+|+|||++|+.+|+.+........
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 357899999999999999999999999998765544 789999999999999999999854211000
Q ss_pred --cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhh
Q 004878 344 --LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (725)
Q Consensus 344 --l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (725)
.....++.++. ....| .+.++.+.+.+. .....|++|||+|.+ ..+.++.|+.
T Consensus 85 ~~~~~~d~~~i~g------~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~l-------------t~~~~n~LLk 143 (451)
T PRK06305 85 SSGTSLDVLEIDG------ASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHML-------------TKEAFNSLLK 143 (451)
T ss_pred hcCCCCceEEeec------cccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-------------CHHHHHHHHH
Confidence 00112333321 11111 112333333332 245679999999999 3356788888
Q ss_pred hhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhh
Q 004878 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 418 ~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~ 495 (725)
+++. +.+.+|++++... .+.+.+++||..+++..++.++....|...++ ..++.+++++++.++..+++
T Consensus 144 ~lEep~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~----~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 144 TLEEPPQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAK----QEGIETSREALLPIARAAQG 214 (451)
T ss_pred HhhcCCCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC
Confidence 8886 4677777776543 57789999999999999999999988887766 34788999999999998876
Q ss_pred hcccCCCchhHHHHHHHHHH
Q 004878 496 YISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 496 ~i~~r~lp~~ai~ll~~a~~ 515 (725)
.+ ..++.+++..+.
T Consensus 215 dl------r~a~~~Lekl~~ 228 (451)
T PRK06305 215 SL------RDAESLYDYVVG 228 (451)
T ss_pred CH------HHHHHHHHHHHH
Confidence 43 356666665543
No 101
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.9e-14 Score=158.94 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=146.3
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCc----c---------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV----F--------- 343 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~----~--------- 343 (725)
.+|..++||..|++++|++..++.|...+......|. ||+||+|+|||++|+.+|+.+...+... .
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 4789999999999999999999999999988766664 7899999999999999999985321110 0
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
.....++++|.+. ..| ...++.+.+.+.. +...|++|||+|.+ ..+.++.|+.+
T Consensus 84 ~g~~~d~~eidaas------~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-------------t~~a~naLLk~ 142 (486)
T PRK14953 84 KGSFPDLIEIDAAS------NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHML-------------TKEAFNALLKT 142 (486)
T ss_pred cCCCCcEEEEeCcc------CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhc-------------CHHHHHHHHHH
Confidence 0012334443211 111 1223444444432 34579999999998 33567788888
Q ss_pred hcCC--CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~~--~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++.. .+++|.+|+... .+.+++.+||+.+.+.+|+.++...+|..++++ .++.++++++..++..+.+.
T Consensus 143 LEepp~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~ 213 (486)
T PRK14953 143 LEEPPPRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGG 213 (486)
T ss_pred HhcCCCCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 8864 456666665433 456789999999999999999999999887773 47889999999999888764
Q ss_pred cccCCCchhHHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~~ 516 (725)
+ ..+..+++.++..
T Consensus 214 l------r~al~~Ldkl~~~ 227 (486)
T PRK14953 214 M------RDAASLLDQASTY 227 (486)
T ss_pred H------HHHHHHHHHHHHh
Confidence 3 4667777766543
No 102
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.60 E-value=2e-14 Score=166.39 Aligned_cols=205 Identities=19% Similarity=0.244 Sum_probs=143.2
Q ss_pred cCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
..|+++.|.+..++++.+++.- ..+.+++|+||||||||+++++++.++ +.+++.+++
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~ 218 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISG 218 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeh
Confidence 3456677777776666655421 235679999999999999999999988 667788887
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCCcHHHHHHHhhhhc----CCCeEEEEe
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCIAS 429 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (725)
..+.. .+.+.....++.+|..+....|+||||||+|.+......+.+. ........+.|+..+. +..+++|++
T Consensus 219 ~~~~~--~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaa 296 (644)
T PRK10733 219 SDFVE--MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 296 (644)
T ss_pred HHhHH--hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEe
Confidence 76653 3445556778889999988889999999999997654332110 0111223344433332 456899999
Q ss_pred ccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhH
Q 004878 430 TTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~a 506 (725)
||.++ .+|+++.| || ..|.|+.|+.++|.+||+.+..+..... +..+..+++.+.+|. +.+.
T Consensus 297 TN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-----~~d~~~la~~t~G~s-----gadl 361 (644)
T PRK10733 297 TNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-----DIDAAIIARGTPGFS-----GADL 361 (644)
T ss_pred cCChh-----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-----cCCHHHHHhhCCCCC-----HHHH
Confidence 99987 89999998 99 5899999999999999988776432111 112344555555553 3677
Q ss_pred HHHHHHHHHHHH
Q 004878 507 IDLVDEAGSRAH 518 (725)
Q Consensus 507 i~ll~~a~~~~~ 518 (725)
..++.+|...+.
T Consensus 362 ~~l~~eAa~~a~ 373 (644)
T PRK10733 362 ANLVNEAALFAA 373 (644)
T ss_pred HHHHHHHHHHHH
Confidence 778888776543
No 103
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=3.4e-14 Score=154.63 Aligned_cols=201 Identities=21% Similarity=0.214 Sum_probs=144.6
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------- 343 (725)
+|.++++|..|++++|+++.++.+.+.+......+ +||+||+|+|||++++.+++.+.....+..
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 68899999999999999999999999998765554 689999999999999999999864321110
Q ss_pred cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 344 l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
.....++.++... .. -...++.+++.+.. .+..|++|||+|.+ ....++.|+..+
T Consensus 83 ~~~~~~~~~~~~~------~~--~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-------------~~~~~~~Ll~~l 141 (355)
T TIGR02397 83 GSSLDVIEIDAAS------NN--GVDDIREILDNVKYAPSSGKYKVYIIDEVHML-------------SKSAFNALLKTL 141 (355)
T ss_pred CCCCCEEEeeccc------cC--CHHHHHHHHHHHhcCcccCCceEEEEeChhhc-------------CHHHHHHHHHHH
Confidence 0122334443221 01 12235556665543 24569999999988 234567777777
Q ss_pred cC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 420 ~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+. ..+.+|.+++... .+.+.+++|+..+.+++|+.++...+++..+. ..++.+++++++.++..+.+.
T Consensus 142 e~~~~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~----~~g~~i~~~a~~~l~~~~~g~- 211 (355)
T TIGR02397 142 EEPPEHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILD----KEGIKIEDEALELIARAADGS- 211 (355)
T ss_pred hCCccceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC-
Confidence 75 4566667666543 45688999999999999999999999988776 347789999999999887653
Q ss_pred ccCCCchhHHHHHHHHHH
Q 004878 498 SDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 498 ~~r~lp~~ai~ll~~a~~ 515 (725)
+..+.+.++..+.
T Consensus 212 -----~~~a~~~lekl~~ 224 (355)
T TIGR02397 212 -----LRDALSLLDQLIS 224 (355)
T ss_pred -----hHHHHHHHHHHHh
Confidence 2466666665554
No 104
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.8e-14 Score=161.21 Aligned_cols=202 Identities=18% Similarity=0.180 Sum_probs=145.4
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCC---Ccc-----------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV---PVF----------- 343 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~---p~~----------- 343 (725)
-+.+++||..|++++|++..++.|...+...+..| +||+||+||||||+|+.+|+.+..... |..
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 36789999999999999999999999888766555 889999999999999999999854211 100
Q ss_pred --------cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHH
Q 004878 344 --------LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (725)
Q Consensus 344 --------l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~ 411 (725)
..+..++.+|.. ...+ .+.++.+.+.+. .+...|++|||+|.+ ....
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~------s~~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-------------t~~a 143 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAA------SNNS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHML-------------STAA 143 (620)
T ss_pred HHHHHHhccCCCCeEEeccc------ccCC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-------------CHHH
Confidence 001122223211 1111 233555555552 234569999999999 3356
Q ss_pred HHHHhhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Q 004878 412 SNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (725)
Q Consensus 412 ~~~L~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l 489 (725)
+|.|+.++++ +.+++|.+++... .+.+.+.+|++.++|.+++.++....+..++. ..++.+++++++.+
T Consensus 144 ~naLLK~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~----~egi~I~~eal~~L 214 (620)
T PRK14954 144 FNAFLKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICR----AEGIQIDADALQLI 214 (620)
T ss_pred HHHHHHHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHH
Confidence 7889999987 4566776665433 56688999999999999999998888877766 44788999999999
Q ss_pred HHHhhhhcccCCCchhHHHHHHHHHHH
Q 004878 490 VHLSARYISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 490 ~~~s~~~i~~r~lp~~ai~ll~~a~~~ 516 (725)
+..+++.+ ..++..++..+.+
T Consensus 215 a~~s~Gdl------r~al~eLeKL~~y 235 (620)
T PRK14954 215 ARKAQGSM------RDAQSILDQVIAF 235 (620)
T ss_pred HHHhCCCH------HHHHHHHHHHHHh
Confidence 99988754 3556666655444
No 105
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.58 E-value=3.7e-14 Score=151.88 Aligned_cols=201 Identities=17% Similarity=0.220 Sum_probs=140.7
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l 357 (725)
..|.+++||..|++++|+++.++.+...+......+++|+||+|+|||++++.+++.+..... ...++.++....
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccc
Confidence 468999999999999999999999999998877778999999999999999999999843211 122334332211
Q ss_pred hccccccchHHHHHHHHHHHHH--hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccch
Q 004878 358 MAGAKERGELEARVTTLISEIQ--KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (725)
Q Consensus 358 ~~g~~~~g~~~~~l~~~~~~~~--~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~ 433 (725)
. ....+...+..+..... .....+++|||+|.+. .+.++.|..+++. ....+|.+++..
T Consensus 80 ~----~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-------------~~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 80 R----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-------------SDAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred c----chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-------------HHHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 1 01111122222221110 1235699999999882 2345566666663 345666666654
Q ss_pred hhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q 004878 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (725)
Q Consensus 434 ~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a 513 (725)
. .+.+.+.+|+..+.+++++.++...+++..+. ..++.+++++++.++..+.+.+ ..+++.++.+
T Consensus 143 ~-----~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~----~~~~~i~~~al~~l~~~~~gd~------r~~~~~l~~~ 207 (319)
T PRK00440 143 S-----KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE----NEGIEITDDALEAIYYVSEGDM------RKAINALQAA 207 (319)
T ss_pred c-----ccchhHHHHhheeeeCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 3 45677999999999999999999998888776 4478899999999999877553 3667777655
Q ss_pred HH
Q 004878 514 GS 515 (725)
Q Consensus 514 ~~ 515 (725)
+.
T Consensus 208 ~~ 209 (319)
T PRK00440 208 AA 209 (319)
T ss_pred HH
Confidence 54
No 106
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6e-14 Score=153.18 Aligned_cols=203 Identities=21% Similarity=0.219 Sum_probs=144.3
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCC-CCceEEcCCCChHHHHHHHHHHHHHhcCCCcc--cCCCeEEEeeh
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--LLSKRIMSLDM 354 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~-~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~--l~~~~l~~ld~ 354 (725)
..|.+++||..|++++|++..++.+...+..+.. .++||+||+|+|||++++.+++.+.....+.. ..+..++.++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 4678999999999999999999999999987554 46889999999999999999998854222111 11233333321
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 428 (725)
.. .. ....++.+++.+.. .+..|++|||+|.+. ....+.|+..++. ...++|.
T Consensus 85 ~~------~~--~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-------------~~~~~~ll~~le~~~~~~~~Il 143 (367)
T PRK14970 85 AS------NN--SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-------------SAAFNAFLKTLEEPPAHAIFIL 143 (367)
T ss_pred cc------CC--CHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-------------HHHHHHHHHHHhCCCCceEEEE
Confidence 11 11 12335555555432 345699999999882 2346677777765 3456666
Q ss_pred eccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHH
Q 004878 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ 508 (725)
+++... .+.+++.+|+..+++.+|+.++...++...+. ..++.+++++++.++..+.+.+ ..++.
T Consensus 144 ~~~~~~-----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~----~~g~~i~~~al~~l~~~~~gdl------r~~~~ 208 (367)
T PRK14970 144 ATTEKH-----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAV----KEGIKFEDDALHIIAQKADGAL------RDALS 208 (367)
T ss_pred EeCCcc-----cCCHHHHhcceeEecCCccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhCCCCH------HHHHH
Confidence 665543 66789999999999999999999988887776 4578899999999999877533 35666
Q ss_pred HHHHHHHH
Q 004878 509 LVDEAGSR 516 (725)
Q Consensus 509 ll~~a~~~ 516 (725)
.++..+.+
T Consensus 209 ~lekl~~y 216 (367)
T PRK14970 209 IFDRVVTF 216 (367)
T ss_pred HHHHHHHh
Confidence 66655543
No 107
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6e-14 Score=160.51 Aligned_cols=190 Identities=19% Similarity=0.168 Sum_probs=141.1
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCC-CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcc---cC-------
Q 004878 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF---LL------- 345 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~-~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~---l~------- 345 (725)
..+|.+++++..|++++|++..+..|..++...+ ..++||+||+|+|||++|+.+|+.+........ -.
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 3578899999999999999999999999988754 467899999999999999999999864211000 00
Q ss_pred ------CCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHH
Q 004878 346 ------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (725)
Q Consensus 346 ------~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L 415 (725)
...+++++.. .....+.++.+++.+.. +...|+||||+|.| ..+.++.|
T Consensus 83 ~i~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-------------t~~a~naL 141 (620)
T PRK14948 83 AIAAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-------------STAAFNAL 141 (620)
T ss_pred HHhcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-------------CHHHHHHH
Confidence 1123333211 11123456666666543 34569999999999 34678889
Q ss_pred hhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 004878 416 KPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 416 ~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s 493 (725)
+.+++. +.+++|++|+... .+.+.+++||+.+.|..++.++....+..++.+ .++.++++++..+++.+
T Consensus 142 LK~LEePp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s 212 (620)
T PRK14948 142 LKTLEEPPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRS 212 (620)
T ss_pred HHHHhcCCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHc
Confidence 999986 4577777777544 567899999999999999999988888777763 46788999999998888
Q ss_pred hhh
Q 004878 494 ARY 496 (725)
Q Consensus 494 ~~~ 496 (725)
.+.
T Consensus 213 ~G~ 215 (620)
T PRK14948 213 QGG 215 (620)
T ss_pred CCC
Confidence 764
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=8e-13 Score=157.45 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=127.1
Q ss_pred hcCCCcccccHHHHHHHHHHHhcC--------CC-CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh
Q 004878 286 EELIDPVIGRETEIQRIIQILCRR--------TK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~~--------~~-~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~ 356 (725)
..-...++|++..+..+...+.+. ++ .+++|+||+|||||++|++|++.+... +..++.+|++.
T Consensus 564 ~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-------~~~~i~id~se 636 (857)
T PRK10865 564 QELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-------DDAMVRIDMSE 636 (857)
T ss_pred HHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-------CCcEEEEEhHH
Confidence 334567999999999988887642 11 357999999999999999999988432 44577888776
Q ss_pred hhcc--------c--cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC---
Q 004878 357 LMAG--------A--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--- 423 (725)
Q Consensus 357 l~~g--------~--~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~--- 423 (725)
+... . .+.|.-+ -..+.+.++..+..||+|||++.+ ..++++.|.++++.+.
T Consensus 637 ~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka-------------~~~v~~~Ll~ile~g~l~d 701 (857)
T PRK10865 637 FMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA-------------HPDVFNILLQVLDDGRLTD 701 (857)
T ss_pred hhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC-------------CHHHHHHHHHHHhhCceec
Confidence 5321 0 0111100 011223344556689999999988 5578899998887543
Q ss_pred ----------eEEEEeccch--hhh------------h------hhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHH
Q 004878 424 ----------LQCIASTTQD--EHR------------T------QFEKDKALARRF-QPVLISEPSQEDAVRILLGLREK 472 (725)
Q Consensus 424 ----------v~vI~at~~~--~~~------------~------~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~ 472 (725)
.++|+|+|.. .+. . .....|.|.+|+ ..+.+.+++.++...|++..+.+
T Consensus 702 ~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 702 GQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred CCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 2478888762 110 0 112458899999 67888889999999998887765
Q ss_pred HHh-----ccCCCCCHHHHHHHHHHh
Q 004878 473 YEA-----HHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 473 ~~~-----~~~~~i~~~~l~~l~~~s 493 (725)
... ...+.++++++++++...
T Consensus 782 l~~rl~~~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 782 LYKRLEERGYEIHISDEALKLLSENG 807 (857)
T ss_pred HHHHHHhCCCcCcCCHHHHHHHHHcC
Confidence 421 234578999999888753
No 109
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.8e-14 Score=160.11 Aligned_cols=202 Identities=20% Similarity=0.182 Sum_probs=149.7
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCc---------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--------------- 342 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~--------------- 342 (725)
-+.+++||..|+++||++..++.|...+......+ +||+||+|+|||++|+.+|+.+.......
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence 46789999999999999999999999998876666 68999999999999999999985321100
Q ss_pred ccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 343 FLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 343 ~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
......++.+|... .. -...++.+++.+.. ++..|++|||+|.+ ..+.++.|+.+
T Consensus 86 ~~~~~n~~~ld~~~------~~--~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-------------s~~a~naLLK~ 144 (614)
T PRK14971 86 EQRSYNIHELDAAS------NN--SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-------------SQAAFNAFLKT 144 (614)
T ss_pred cCCCCceEEecccc------cC--CHHHHHHHHHHHhhCcccCCcEEEEEECcccC-------------CHHHHHHHHHH
Confidence 00123344444321 11 12335566655542 34569999999999 34678899999
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. ...++|++|+... .+.+.|++||..++|.+++.++....|..++. ..++.+++++++.++..+++.
T Consensus 145 LEepp~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~----~egi~i~~~al~~La~~s~gd 215 (614)
T PRK14971 145 LEEPPSYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVAS----KEGITAEPEALNVIAQKADGG 215 (614)
T ss_pred HhCCCCCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 987 4577777776543 67789999999999999999999988887776 447899999999999988765
Q ss_pred cccCCCchhHHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~~ 516 (725)
+ .+++..++..+.+
T Consensus 216 l------r~al~~Lekl~~y 229 (614)
T PRK14971 216 M------RDALSIFDQVVSF 229 (614)
T ss_pred H------HHHHHHHHHHHHh
Confidence 4 3566666655443
No 110
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=4.5e-14 Score=130.37 Aligned_cols=123 Identities=26% Similarity=0.392 Sum_probs=97.2
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcC-CeEEEEccch
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG-DVILFIDEVH 392 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~-~~IL~IDEid 392 (725)
+||+||||+|||++++.+++.+ +.+++.+++..+. ..+.++....+..++..+.... ++||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 6899999999999999999998 7889999999887 3456788889999999998876 8999999999
Q ss_pred hhhhCCCCCCCCCCCcHHHHHHHhhhhcC-----CCeEEEEeccchhhhhhhcccHHHH-cccc-eEEec
Q 004878 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGR-----GELQCIASTTQDEHRTQFEKDKALA-RRFQ-PVLIS 455 (725)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-----~~v~vI~at~~~~~~~~~~ld~~L~-~Rf~-~I~i~ 455 (725)
.+.+..... .......+.+.|...+++ .++.+|++||..+ .+++.+. +||. .|+++
T Consensus 69 ~l~~~~~~~--~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPS--SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTS--SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccc--cccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 998765111 012234455666665552 4589999999976 8999999 9995 56654
No 111
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.3e-14 Score=162.78 Aligned_cols=206 Identities=23% Similarity=0.261 Sum_probs=156.3
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-.|+++-|-+..+.+|.+.+.. .+++.+||+||||||||..|+++|..+..+.- ...++--+
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~-----kisffmrk 336 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNR-----KISFFMRK 336 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccc-----ccchhhhc
Confidence 4688888999999888886432 45678999999999999999999998865311 11111111
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEEe
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (725)
..+.. .++.|+.+..++.+|++++...|+|+|+||||-|.+..+..+. .....+...|+.+|. +|.+++||+
T Consensus 337 gaD~l--skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgqVvvigA 412 (1080)
T KOG0732|consen 337 GADCL--SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQVVVIGA 412 (1080)
T ss_pred Cchhh--ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCceEEEcc
Confidence 22222 4788999999999999999999999999999988877654222 223456667776664 789999999
Q ss_pred ccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhH
Q 004878 430 TTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~a 506 (725)
||.++ .+||+|+| || ..+.|+.|+.+.|.+|+......+ .-.++...+..+++.+.+|.+ .+.
T Consensus 413 TnRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~g-----aDl 478 (1080)
T KOG0732|consen 413 TNRPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW----EPPISRELLLWLAEETSGYGG-----ADL 478 (1080)
T ss_pred cCCcc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC----CCCCCHHHHHHHHHhccccch-----HHH
Confidence 99998 88999998 89 589999999999999997766644 346788889999999998875 344
Q ss_pred HHHHHHHHH
Q 004878 507 IDLVDEAGS 515 (725)
Q Consensus 507 i~ll~~a~~ 515 (725)
..++.+|..
T Consensus 479 kaLCTeAal 487 (1080)
T KOG0732|consen 479 KALCTEAAL 487 (1080)
T ss_pred HHHHHHHhh
Confidence 445554444
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.4e-13 Score=157.91 Aligned_cols=188 Identities=19% Similarity=0.186 Sum_probs=135.0
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCC-Ccc-------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV-PVF------------- 343 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~-p~~------------- 343 (725)
.|.+++||..|+++||++..++.|...+..+...+ +||+||+|+|||++++.+++.+..... +..
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence 36789999999999999999999999888765555 589999999999999999999853211 100
Q ss_pred -cCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 344 -l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
..+..++.++... ..+ ...++.+++.+.. ....|+||||+|.| ..+.++.|+.+
T Consensus 85 ~~~~~d~~~i~~~~------~~~--vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-------------~~~a~naLLk~ 143 (585)
T PRK14950 85 EGSAVDVIEMDAAS------HTS--VDDAREIIERVQFRPALARYKVYIIDEVHML-------------STAAFNALLKT 143 (585)
T ss_pred cCCCCeEEEEeccc------cCC--HHHHHHHHHHHhhCcccCCeEEEEEeChHhC-------------CHHHHHHHHHH
Confidence 0012233333211 111 1224555544432 34579999999999 33567788888
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
+++ ..+++|.+++... .+.+.+++|++.+.|..++..+...++..++. ..++.++++++..++..+.+.
T Consensus 144 LEepp~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~----~egl~i~~eal~~La~~s~Gd 214 (585)
T PRK14950 144 LEEPPPHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAA----AEGINLEPGALEAIARAATGS 214 (585)
T ss_pred HhcCCCCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 886 4566666665443 45688999999999999999998888887776 347789999999998887653
No 113
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.55 E-value=6.6e-14 Score=165.92 Aligned_cols=183 Identities=20% Similarity=0.265 Sum_probs=126.2
Q ss_pred cccccHHHHHHHHHHHhc------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-----c
Q 004878 291 PVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----A 359 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~-----~ 359 (725)
+++|+++.++++.+.+.. ..+.+++|+||||||||++|+++|..+ +.+++.++++... .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 589999999998886543 134568999999999999999999998 4555665543321 0
Q ss_pred c--ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC----------------
Q 004878 360 G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------- 421 (725)
Q Consensus 360 g--~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---------------- 421 (725)
+ ..+.|.....+...+..+....+ |+||||||.+.... ..+..+.|+.+++.
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~---------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF---------RGDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc---------CCCHHHHHHHhcCHHhcCccccccCCceec
Confidence 1 12334444445555555544444 88999999995321 11233445444431
Q ss_pred -CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHH-HHHHhcc-----CCCCCHHHHHHHHHHhh
Q 004878 422 -GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHH-----NCKFTLEAINAAVHLSA 494 (725)
Q Consensus 422 -~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~-~~~~~~~-----~~~i~~~~l~~l~~~s~ 494 (725)
+++++|+|+|... .++++|++||..|.|+.|+.+++.+|++..+ .+....+ ++.++++++.++++...
T Consensus 461 ~s~v~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 461 LSKVIFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred cCCEEEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 4678899999865 7899999999999999999999999998754 3322222 45799999999988544
Q ss_pred hhcc
Q 004878 495 RYIS 498 (725)
Q Consensus 495 ~~i~ 498 (725)
+...
T Consensus 536 ~e~g 539 (775)
T TIGR00763 536 REAG 539 (775)
T ss_pred hhcC
Confidence 4333
No 114
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=5.1e-13 Score=147.60 Aligned_cols=162 Identities=17% Similarity=0.239 Sum_probs=109.6
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHH-HHHHHHHHHHhcCCeEEEEcc
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA-RVTTLISEIQKSGDVILFIDE 390 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~-~l~~~~~~~~~~~~~IL~IDE 390 (725)
++++|+||+|+|||+|++++++.+... +.++++++...+... ....+.. ... .+.... ....+|+|||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f~~~--~~~~l~~~~~~-~f~~~~-~~~dvLiIDD 210 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELFTEH--LVSAIRSGEMQ-RFRQFY-RNVDALFIED 210 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHHHHH--HHHHHhcchHH-HHHHHc-ccCCEEEEcc
Confidence 668999999999999999999998542 567788876554311 0000000 011 111111 2345999999
Q ss_pred chhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHccc---ceEEecCCCHHHHHHHHH
Q 004878 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF---QPVLISEPSQEDAVRILL 467 (725)
Q Consensus 391 id~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf---~~I~i~~Ps~ee~~~IL~ 467 (725)
++.+.+.. ....++..++..+...+..+++.+...+. .+..+++.|.+|| ..+.+.+|+.+++..||+
T Consensus 211 iq~l~~k~-------~~qeelf~l~N~l~~~~k~IIlts~~~p~--~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 211 IEVFSGKG-------ATQEEFFHTFNSLHTEGKLIVISSTCAPQ--DLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred hhhhcCCh-------hhHHHHHHHHHHHHHCCCcEEEecCCCHH--HHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 99984321 12345566666666666655555554433 2335789999999 489999999999999998
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 468 GLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 468 ~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
..++. .++.++++++++++....+.+
T Consensus 282 ~k~~~----~~~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEA----LSIRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHH----cCCCCCHHHHHHHHHhcCCCH
Confidence 87774 478999999999988766543
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=4.7e-13 Score=149.94 Aligned_cols=188 Identities=14% Similarity=0.172 Sum_probs=121.8
Q ss_pred CCCccc-ccHHH--HHHHHHHHhcC--CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc
Q 004878 288 LIDPVI-GRETE--IQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (725)
Q Consensus 288 ~l~~li-G~~~~--i~~l~~~L~~~--~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~ 362 (725)
+||+++ |.... ...+.++.... ..+.++|+|++|+|||+|++++++++... ..+..++++++..+....
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-----~~g~~V~Yitaeef~~el- 359 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-----YPGTRVRYVSSEEFTNEF- 359 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHHHHH-
Confidence 455554 44332 22334443322 23558999999999999999999998541 126788888887655211
Q ss_pred ccchHH-HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcc
Q 004878 363 ERGELE-ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (725)
Q Consensus 363 ~~g~~~-~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~l 441 (725)
...+. ..+..+.+... ...+|+||||+.+.+.. .....+++++..+.++++.+||.+...+. .+..+
T Consensus 360 -~~al~~~~~~~f~~~y~--~~DLLlIDDIq~l~gke-------~tqeeLF~l~N~l~e~gk~IIITSd~~P~--eL~~l 427 (617)
T PRK14086 360 -INSIRDGKGDSFRRRYR--EMDILLVDDIQFLEDKE-------STQEEFFHTFNTLHNANKQIVLSSDRPPK--QLVTL 427 (617)
T ss_pred -HHHHHhccHHHHHHHhh--cCCEEEEehhccccCCH-------HHHHHHHHHHHHHHhcCCCEEEecCCChH--hhhhc
Confidence 00000 01111112222 24599999999995332 12356777777777766655554433332 23357
Q ss_pred cHHHHcccc---eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 442 d~~L~~Rf~---~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
++.|.+||. .+.|..|+.+.|..||+..+. ..++.++++++++++....+.+
T Consensus 428 ~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~----~r~l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 428 EDRLRNRFEWGLITDVQPPELETRIAILRKKAV----QEQLNAPPEVLEFIASRISRNI 482 (617)
T ss_pred cHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhccCCH
Confidence 899999994 789999999999999998776 4588999999999998766543
No 116
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.54 E-value=2.1e-15 Score=145.21 Aligned_cols=65 Identities=62% Similarity=1.005 Sum_probs=61.4
Q ss_pred CCCeeEEEEcCCCCcHHHHHHHHHHHhc-CCCCceEEecccCCcc----hhhHhHhhcCCCccccccccc
Q 004878 657 RPTAAMLFCGPTGVGKTELAKSLAACYF-GSESSMLRLDMSEYME----RHTVSKLIGSPPGYVGVGEYL 721 (725)
Q Consensus 657 rp~~~iLl~GPpGtGKT~lAkaLA~~lf-g~~~~lIrid~sE~~~----k~~vs~liG~ppgyvG~~e~~ 721 (725)
||.+++||+||+|||||++|++||+.+| |+..+|+++||++|.+ ++.+++++|+||||||+.+..
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~g 70 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGG 70 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchh
Confidence 6889999999999999999999999999 8999999999999999 999999999999999998764
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=99.53 E-value=2.8e-13 Score=137.85 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=113.0
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcc
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDE 390 (725)
.++++|+||+|+|||+|++++++++... +..+++++...+... ...+++.+... .+|+|||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~----------~~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR----------GPELLDNLEQY--ELVCLDD 105 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh----------hHHHHHhhhhC--CEEEEec
Confidence 3678899999999999999999987542 567788887776531 12233333333 3899999
Q ss_pred chhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHccc---ceEEecCCCHHHHHHHHH
Q 004878 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF---QPVLISEPSQEDAVRILL 467 (725)
Q Consensus 391 id~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf---~~I~i~~Ps~ee~~~IL~ 467 (725)
++.+.+.. .....+.+++....+++..++|++++.+.+ +....+.|++|| ..+.+.+|+.+++..+++
T Consensus 106 i~~~~~~~-------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~--l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 106 LDVIAGKA-------DWEEALFHLFNRLRDSGRRLLLAASKSPRE--LPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred hhhhcCCh-------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHH--cCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 99884321 123456677777777788888877766652 223479999999 578899999999999998
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 468 GLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 468 ~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
..+. ..++.+++++++++++.+.+.+
T Consensus 177 ~ka~----~~~~~l~~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 177 LRAS----RRGLHLTDEVGHFILTRGTRSM 202 (234)
T ss_pred HHHH----HcCCCCCHHHHHHHHHhcCCCH
Confidence 6544 2368999999999999887654
No 118
>PRK06893 DNA replication initiation factor; Validated
Probab=99.53 E-value=2.5e-13 Score=137.93 Aligned_cols=180 Identities=12% Similarity=0.167 Sum_probs=114.9
Q ss_pred hcCCCcccccHHHH--HHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccc
Q 004878 286 EELIDPVIGRETEI--QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (725)
Q Consensus 286 ~~~l~~liG~~~~i--~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~ 363 (725)
+.+||+++|.+... ..+.+.......+.++|+||||||||+|++++++++... +..+.++++.....
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~~---- 80 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQY---- 80 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhhh----
Confidence 34677777655332 112222222222346899999999999999999998553 34445555432210
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEE-EEeccchhhhhhhccc
Q 004878 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQC-IASTTQDEHRTQFEKD 442 (725)
Q Consensus 364 ~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~v-I~at~~~~~~~~~~ld 442 (725)
....+++.+. ...+|+|||++.+.+.. .....+.+++....+++..++ +++...+. .+-...
T Consensus 81 ------~~~~~~~~~~--~~dlLilDDi~~~~~~~-------~~~~~l~~l~n~~~~~~~~illits~~~p~--~l~~~~ 143 (229)
T PRK06893 81 ------FSPAVLENLE--QQDLVCLDDLQAVIGNE-------EWELAIFDLFNRIKEQGKTLLLISADCSPH--ALSIKL 143 (229)
T ss_pred ------hhHHHHhhcc--cCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHcCCcEEEEeCCCChH--Hccccc
Confidence 1122333332 24599999999984321 122345566666666665544 44444443 122345
Q ss_pred HHHHcccc---eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 443 KALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 443 ~~L~~Rf~---~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+.|.+|+. .+.+++|+.+++.+||+..+. ..++.+++++++++++.+.+.+
T Consensus 144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~----~~~l~l~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY----QRGIELSDEVANFLLKRLDRDM 197 (229)
T ss_pred hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCCH
Confidence 89999985 889999999999999988776 3478999999999999887654
No 119
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.7e-14 Score=141.97 Aligned_cols=169 Identities=21% Similarity=0.292 Sum_probs=134.2
Q ss_pred hhcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEE
Q 004878 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (725)
Q Consensus 285 ~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ 351 (725)
++-.|+.+-|--..++.+.+.+.- ..+..++||||||+|||.++++++..+ +..++.
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~ 196 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLK 196 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEE
Confidence 344788888988888888886533 344568999999999999999999998 777777
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCe
Q 004878 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGEL 424 (725)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v 424 (725)
+..+.+. .++.|+....+++.+..++...|||||+||||.+.+...+ .+ ......++..|..++. -+++
T Consensus 197 v~ss~lv--~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~s-e~-Ts~dreiqrTLMeLlnqmdgfd~l~rV 272 (388)
T KOG0651|consen 197 VVSSALV--DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFS-EG-TSSDREIQRTLMELLNQMDGFDTLHRV 272 (388)
T ss_pred eeHhhhh--hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEec-cc-cchhHHHHHHHHHHHHhhccchhcccc
Confidence 7777777 4678999999999999999999999999999988654311 11 1234566766666664 3679
Q ss_pred EEEEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHH
Q 004878 425 QCIASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREK 472 (725)
Q Consensus 425 ~vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~ 472 (725)
.+|.|||.++ .++|+|.| |+ ..+.++.|+...|..|++-..+.
T Consensus 273 k~ImatNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~ 318 (388)
T KOG0651|consen 273 KTIMATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP 318 (388)
T ss_pred cEEEecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeecccc
Confidence 9999999987 89999999 88 47999999999998887655443
No 120
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.52 E-value=5.5e-13 Score=147.36 Aligned_cols=188 Identities=16% Similarity=0.234 Sum_probs=120.4
Q ss_pred CCCc-ccccHHHH--HHHHHHHhcC--CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc
Q 004878 288 LIDP-VIGRETEI--QRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (725)
Q Consensus 288 ~l~~-liG~~~~i--~~l~~~L~~~--~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~ 362 (725)
+||. ++|.+... ..+.++.... ..++++|+||+|+|||+|++++++++.+. . .+..++++++..+....
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~-~----~~~~v~yi~~~~~~~~~- 181 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILEN-N----PNAKVVYVSSEKFTNDF- 181 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHh-C----CCCcEEEEEHHHHHHHH-
Confidence 5666 44655432 2233333322 23567899999999999999999998653 1 15677888876654210
Q ss_pred ccchHH-HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcc
Q 004878 363 ERGELE-ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (725)
Q Consensus 363 ~~g~~~-~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~l 441 (725)
...+. ..+..+.+.+.. ..+|+|||+|.+.+.. .....+..++....+.+..++|++...+. ....+
T Consensus 182 -~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~~~~~~~~iiits~~~p~--~l~~l 249 (405)
T TIGR00362 182 -VNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAGKE-------RTQEEFFHTFNALHENGKQIVLTSDRPPK--ELPGL 249 (405)
T ss_pred -HHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCCCCEEEecCCCHH--HHhhh
Confidence 00000 011122222222 4599999999984321 11234566666666666666665554443 22346
Q ss_pred cHHHHcccc---eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 442 d~~L~~Rf~---~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
++.+.+||. .+.|++|+.+++..||+..++. .++.++++++++++....+.+
T Consensus 250 ~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~~ 304 (405)
T TIGR00362 250 EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRSNV 304 (405)
T ss_pred hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH
Confidence 789999994 6999999999999999988774 478899999999998766543
No 121
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=6.7e-13 Score=148.48 Aligned_cols=188 Identities=16% Similarity=0.235 Sum_probs=122.8
Q ss_pred CCCccc-ccHH--HHHHHHHHHhcC--CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc
Q 004878 288 LIDPVI-GRET--EIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (725)
Q Consensus 288 ~l~~li-G~~~--~i~~l~~~L~~~--~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~ 362 (725)
+||+++ |... ....+.++.... ..++++|+||+|+|||+|++++++++.... | +..++++++..+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~----~~~v~yi~~~~~~~~-- 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVTSEKFTND-- 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHH--
Confidence 566643 5333 333444443332 235689999999999999999999986421 1 567888887665421
Q ss_pred ccchHHH-HHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcc
Q 004878 363 ERGELEA-RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (725)
Q Consensus 363 ~~g~~~~-~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~l 441 (725)
....+.. ....+.+... ...+|+|||+|.+.+.. ....++..++..+.+.+..++|++...+. ....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~l~~~~~~iiits~~~p~--~l~~l 261 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE-------RTQEEFFHTFNALHEAGKQIVLTSDRPPK--ELPGL 261 (450)
T ss_pred HHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCCCcEEEECCCCHH--HHHHH
Confidence 1111100 1112222222 34599999999984321 11345666676777777666666655443 12236
Q ss_pred cHHHHcccc---eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 442 d~~L~~Rf~---~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
++.|.+||. .+.|++|+.+++..||+..+.. .++.++++++++++..+.+.+
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~~ 316 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITSNV 316 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCCCH
Confidence 799999993 7999999999999999988773 478899999999998776543
No 122
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.52 E-value=4.6e-13 Score=153.97 Aligned_cols=213 Identities=21% Similarity=0.239 Sum_probs=143.1
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh
Q 004878 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~ 356 (725)
..++.+.+|+..|++++|++..++++...+......+++|+||+||||||+|+.+++.........+..+..++.+++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 35677778999999999999999999888876677789999999999999999998876332221112245677777654
Q ss_pred hhcccc-----ccchH----HHHHHHHHHH----------HHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhh
Q 004878 357 LMAGAK-----ERGEL----EARVTTLISE----------IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (725)
Q Consensus 357 l~~g~~-----~~g~~----~~~l~~~~~~----------~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (725)
+..... ..+.. ....+..+.. +....+.+|||||++.| ....++.|..
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-------------d~~~Q~~Ll~ 287 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-------------DPLLQNKLLK 287 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-------------CHHHHHHHHH
Confidence 321000 00000 0001111111 11223569999999988 3345566666
Q ss_pred hhcCC------------------------------CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHH
Q 004878 418 SLGRG------------------------------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (725)
Q Consensus 418 ~l~~~------------------------------~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~ 467 (725)
+++.+ .+++|++|+... ..++++|++||..+.+++++.++...|++
T Consensus 288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~----~~l~~aLrSR~~~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc----cccCHHHHhceeEEEeCCCCHHHHHHHHH
Confidence 65432 256777666543 25789999999989999999999999999
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 468 GLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 468 ~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
..+.+ .++.+++++++.+..++.. ..++++.|..++..+
T Consensus 364 ~~a~~----~~v~ls~eal~~L~~ys~~-------gRraln~L~~~~~~~ 402 (615)
T TIGR02903 364 NAAEK----INVHLAAGVEELIARYTIE-------GRKAVNILADVYGYA 402 (615)
T ss_pred HHHHH----cCCCCCHHHHHHHHHCCCc-------HHHHHHHHHHHHHHH
Confidence 87764 3567899988888776431 136677777666544
No 123
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.52 E-value=2.7e-13 Score=136.39 Aligned_cols=186 Identities=21% Similarity=0.256 Sum_probs=114.7
Q ss_pred CCCccc-cc--HHHHHHHHHHHhcCC--CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-
Q 004878 288 LIDPVI-GR--ETEIQRIIQILCRRT--KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA- 361 (725)
Q Consensus 288 ~l~~li-G~--~~~i~~l~~~L~~~~--~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~- 361 (725)
+||.+| |. +.....+..+..... .+.++|+||+|+|||+|+++++.++.+. . .+.++++++...+....
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~----~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-H----PGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH-C----TTS-EEEEEHHHHHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc-c----ccccceeecHHHHHHHHH
Confidence 566664 53 223333333333322 2457999999999999999999988542 1 26788888876654211
Q ss_pred --cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhh
Q 004878 362 --KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439 (725)
Q Consensus 362 --~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~ 439 (725)
...+. +..+.+... .-.+|+|||+|.+.+.. .....+.+++....++++.++|.+...+. ...
T Consensus 81 ~~~~~~~----~~~~~~~~~--~~DlL~iDDi~~l~~~~-------~~q~~lf~l~n~~~~~~k~li~ts~~~P~--~l~ 145 (219)
T PF00308_consen 81 DALRDGE----IEEFKDRLR--SADLLIIDDIQFLAGKQ-------RTQEELFHLFNRLIESGKQLILTSDRPPS--ELS 145 (219)
T ss_dssp HHHHTTS----HHHHHHHHC--TSSEEEEETGGGGTTHH-------HHHHHHHHHHHHHHHTTSEEEEEESS-TT--TTT
T ss_pred HHHHccc----chhhhhhhh--cCCEEEEecchhhcCch-------HHHHHHHHHHHHHHhhCCeEEEEeCCCCc--ccc
Confidence 01111 222223333 24599999999994221 11335666667777788766666645443 233
Q ss_pred cccHHHHcccc---eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 440 EKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 440 ~ld~~L~~Rf~---~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
.+++.|.+||. .+.+.+|+.+++..|++..+. ..++.++++++++++....+.+
T Consensus 146 ~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~----~~~~~l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 146 GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK----ERGIELPEEVIEYLARRFRRDV 202 (219)
T ss_dssp TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH----HTT--S-HHHHHHHHHHTTSSH
T ss_pred ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH----HhCCCCcHHHHHHHHHhhcCCH
Confidence 57899999994 799999999999999988887 5688899999999999876554
No 124
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=1.3e-12 Score=144.68 Aligned_cols=187 Identities=19% Similarity=0.299 Sum_probs=121.4
Q ss_pred CCCccc-ccHHH--HHHHHHHHhcC-CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc-
Q 004878 288 LIDPVI-GRETE--IQRIIQILCRR-TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK- 362 (725)
Q Consensus 288 ~l~~li-G~~~~--i~~l~~~L~~~-~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~- 362 (725)
+||+++ |.... ...+.++.... ..++++||||+|+|||+|++++++++.... | +..++++++..+.....
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~----~~~v~yi~~~~f~~~~~~ 177 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-P----DLRVMYITSEKFLNDLVD 177 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHHHHH
Confidence 566555 54332 23344443322 236789999999999999999999885421 1 56788888766542110
Q ss_pred --ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhc
Q 004878 363 --ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440 (725)
Q Consensus 363 --~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ 440 (725)
..+. +..+.+... ....+|+|||++.+.+.. ....++...+..+.+.+..++|++...+. ....
T Consensus 178 ~~~~~~----~~~f~~~~~-~~~dvLlIDDi~~l~~~~-------~~q~elf~~~n~l~~~~k~iIitsd~~p~--~l~~ 243 (440)
T PRK14088 178 SMKEGK----LNEFREKYR-KKVDVLLIDDVQFLIGKT-------GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSE 243 (440)
T ss_pred HHhccc----HHHHHHHHH-hcCCEEEEechhhhcCcH-------HHHHHHHHHHHHHHHcCCeEEEECCCCHH--HHHH
Confidence 0111 112222221 235699999999985321 11235666666666777655555544433 1224
Q ss_pred ccHHHHcccc---eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 441 KDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 441 ld~~L~~Rf~---~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
+.+.+.+||. .+.|++|+.+++..||+..+. ..++.++++++++++....+.+
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~----~~~~~l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE----IEHGELPEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHhccccCH
Confidence 6689999995 899999999999999988776 3478899999999998776543
No 125
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=4e-13 Score=145.79 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=121.0
Q ss_pred CCCcccccHHHHHHHHHHHhcCC----------CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------c
Q 004878 288 LIDPVIGRETEIQRIIQILCRRT----------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------L 344 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~~~----------~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------l 344 (725)
.|++|+|++..++.|..++.... ...+||+||+|+|||++|+.+|+.+........ .
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 47899999999999999998753 455899999999999999999998854321000 0
Q ss_pred CCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc
Q 004878 345 LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (725)
Q Consensus 345 ~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~ 420 (725)
....++.+.... ... ..+.++.+++.+.. ++..|+||||+|.+ ....+|.|++.++
T Consensus 83 ~hpD~~~i~~~~-----~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-------------~~~aanaLLk~LE 142 (394)
T PRK07940 83 THPDVRVVAPEG-----LSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRL-------------TERAANALLKAVE 142 (394)
T ss_pred CCCCEEEecccc-----ccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhc-------------CHHHHHHHHHHhh
Confidence 011122222111 001 12336666666543 34569999999999 3356788888888
Q ss_pred C---CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 421 R---GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 421 ~---~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
. +.++|++|++. . .+.|++++||+.+.|++|+.++..++|.. + ..++++.+..++.++.+..
T Consensus 143 ep~~~~~fIL~a~~~-~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~------~~~~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 143 EPPPRTVWLLCAPSP-E-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R------DGVDPETARRAARASQGHI 207 (394)
T ss_pred cCCCCCeEEEEECCh-H-----HChHHHHhhCeEEECCCCCHHHHHHHHHH---h------cCCCHHHHHHHHHHcCCCH
Confidence 6 44555555553 3 67899999999999999999997777652 1 1356777888888887753
No 126
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.49 E-value=9.7e-13 Score=148.87 Aligned_cols=209 Identities=19% Similarity=0.161 Sum_probs=138.4
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-----
Q 004878 290 DPVIGRETEIQRIIQILCR----RTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----- 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~----~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~----- 359 (725)
+.++||++++++|...|.. ...+++ +|+|+||||||++++.+.+++....-...+....+++++|..+..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 5789999999999888765 334455 599999999999999999887532111112246678888743210
Q ss_pred --------cc-cccc-hHHHHHHHHHHHHHh--cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHh-hhhcCCCeEE
Q 004878 360 --------GA-KERG-ELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK-PSLGRGELQC 426 (725)
Q Consensus 360 --------g~-~~~g-~~~~~l~~~~~~~~~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~-~~l~~~~v~v 426 (725)
+. ...| .....+..++..+.. ....||+|||||.|... ....+.+++. .......+.+
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------TQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------HHHHHHHHHHHhhccCCeEEE
Confidence 11 1111 223445566665532 23469999999999532 1222333333 2223567899
Q ss_pred EEeccchhhhhhhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCch
Q 004878 427 IASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
||++|..++.. .+++.+++||. .|.|++++.+|+..||+..+... ...+++++++.+++.+...-++- .
T Consensus 906 IGISNdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SGDA---R 976 (1164)
T PTZ00112 906 IAISNTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSGDI---R 976 (1164)
T ss_pred EEecCchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCCHH---H
Confidence 99998765433 56789999984 58899999999999999887642 34689999999998665432211 2
Q ss_pred hHHHHHHHHHHH
Q 004878 505 KAIDLVDEAGSR 516 (725)
Q Consensus 505 ~ai~ll~~a~~~ 516 (725)
+|+++|..|+..
T Consensus 977 KALDILRrAgEi 988 (1164)
T PTZ00112 977 KALQICRKAFEN 988 (1164)
T ss_pred HHHHHHHHHHhh
Confidence 678888777753
No 127
>PRK08727 hypothetical protein; Validated
Probab=99.48 E-value=2.3e-12 Score=131.20 Aligned_cols=187 Identities=14% Similarity=0.174 Sum_probs=120.4
Q ss_pred CCCcccccH-HHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccch
Q 004878 288 LIDPVIGRE-TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (725)
Q Consensus 288 ~l~~liG~~-~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~ 366 (725)
+|+++++.. ..+..+.........+.++|+|++|||||+|+++++..+.+. +..+.++++....
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~~-------- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAAA-------- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHhh--------
Confidence 455555433 444444443333444568999999999999999999987653 5566666654422
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHH
Q 004878 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (725)
Q Consensus 367 ~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~ 446 (725)
..+...++.... ..+|+|||++.+.+.. .....+.+++....+++ ..+|.+++... ..+..+++.|.
T Consensus 82 --~~~~~~~~~l~~--~dlLiIDDi~~l~~~~-------~~~~~lf~l~n~~~~~~-~~vI~ts~~~p-~~l~~~~~dL~ 148 (233)
T PRK08727 82 --GRLRDALEALEG--RSLVALDGLESIAGQR-------EDEVALFDFHNRARAAG-ITLLYTARQMP-DGLALVLPDLR 148 (233)
T ss_pred --hhHHHHHHHHhc--CCEEEEeCcccccCCh-------HHHHHHHHHHHHHHHcC-CeEEEECCCCh-hhhhhhhHHHH
Confidence 223344444433 3499999999884321 11223444444443344 44555555332 12335679999
Q ss_pred ccc---ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHH
Q 004878 447 RRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512 (725)
Q Consensus 447 ~Rf---~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~ 512 (725)
+|| ..+.+++|+.+++..|++..+.. .++.+++++++++++.+.+.. ..++.+++.
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~rd~------r~~l~~L~~ 207 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGEREL------AGLVALLDR 207 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH------HHHHHHHHH
Confidence 996 48899999999999999987663 478999999999999887554 245555543
No 128
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-12 Score=134.35 Aligned_cols=190 Identities=18% Similarity=0.201 Sum_probs=125.8
Q ss_pred ChhhhHhhhhhhhhhhh----hh-cCCCcccccHHHHHHHHHHHhc--------CCCCCceEEcCCCChHHHHHHHHHHH
Q 004878 268 TRASALEQFCVDLTARA----SE-ELIDPVIGRETEIQRIIQILCR--------RTKNNPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 268 ~~~~~l~~~~~~l~~~~----~~-~~l~~liG~~~~i~~l~~~L~~--------~~~~~iLL~Gp~G~GKT~la~~la~~ 334 (725)
|+...+..+..++.-.. +. +-|+++|-....-+++.++-.. ...+|++||||||||||.+|+.||+.
T Consensus 328 pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~ 407 (630)
T KOG0742|consen 328 PWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARH 407 (630)
T ss_pred CCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhh
Confidence 44555666655544322 12 2378888877777777665422 33478999999999999999999987
Q ss_pred HHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCCcHHHHH
Q 004878 335 IVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (725)
Q Consensus 335 l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (725)
. |...-.+..+++- ....+-...|..+|+.++.+ .+.+|||||+|.++-..+..- -++......|
T Consensus 408 S----------GlDYA~mTGGDVA---PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty-mSEaqRsaLN 473 (630)
T KOG0742|consen 408 S----------GLDYAIMTGGDVA---PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY-MSEAQRSALN 473 (630)
T ss_pred c----------CCceehhcCCCcc---ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh-hcHHHHHHHH
Confidence 5 2111111111110 11123445688899988765 678999999998875443310 0112223344
Q ss_pred HHhhhh--cCCCeEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhc
Q 004878 414 LLKPSL--GRGELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAH 476 (725)
Q Consensus 414 ~L~~~l--~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~ 476 (725)
.|+--. ...+++++.+||.++ .+|.++..|+ ++|+|+.|..+||.++|..++.+|...
T Consensus 474 AlLfRTGdqSrdivLvlAtNrpg-----dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 474 ALLFRTGDQSRDIVLVLATNRPG-----DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred HHHHHhcccccceEEEeccCCcc-----chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcC
Confidence 433111 245689999999998 8999999999 599999999999999999999988543
No 129
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.6e-14 Score=146.22 Aligned_cols=62 Identities=34% Similarity=0.599 Sum_probs=55.9
Q ss_pred HHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccccc
Q 004878 643 RAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLS 722 (725)
Q Consensus 643 ~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~ 722 (725)
.+-.+.+.|+.+|+ |+|||||||||||+||||+|+.. +..|||+-+|||..| |+|.+-..|
T Consensus 173 ~PElF~~~GI~PPK----GVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSElVqK------------YiGEGaRlV 233 (406)
T COG1222 173 NPELFEELGIDPPK----GVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSELVQK------------YIGEGARLV 233 (406)
T ss_pred CHHHHHHcCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHHHHH------------HhccchHHH
Confidence 34477889999886 99999999999999999999997 889999999999998 899888777
Q ss_pred c
Q 004878 723 R 723 (725)
Q Consensus 723 ~ 723 (725)
|
T Consensus 234 R 234 (406)
T COG1222 234 R 234 (406)
T ss_pred H
Confidence 6
No 130
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=1.4e-12 Score=139.27 Aligned_cols=112 Identities=26% Similarity=0.327 Sum_probs=81.9
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC------------CCeEEEEeccchhhhhhhcccHHHHccc
Q 004878 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (725)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------~~v~vI~at~~~~~~~~~~ld~~L~~Rf 449 (725)
...|+||||||.++..++.. +.+.++..++..|+++++. ..+.+|++......+ ...+-|.|..||
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~k-p~DlIPEl~GR~ 326 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSK-PSDLIPELQGRF 326 (443)
T ss_pred cCCEEEEEcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCC-hhhccHHHhCcc
Confidence 45699999999998664321 2223455688999998874 456788776533211 124679999999
Q ss_pred -ceEEecCCCHHHHHHHHH----HHHHHHHhc-----cCCCCCHHHHHHHHHHhhh
Q 004878 450 -QPVLISEPSQEDAVRILL----GLREKYEAH-----HNCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 450 -~~I~i~~Ps~ee~~~IL~----~~~~~~~~~-----~~~~i~~~~l~~l~~~s~~ 495 (725)
..+.+.+++.++...||. .+.++|... ..+.+++++++.+++.+..
T Consensus 327 Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 327 PIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 578999999999999994 477777432 3457899999999998864
No 131
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=1.5e-12 Score=138.85 Aligned_cols=112 Identities=25% Similarity=0.314 Sum_probs=80.9
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC------------CCeEEEEeccchhhhhhhcccHHHHccc
Q 004878 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (725)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------~~v~vI~at~~~~~~~~~~ld~~L~~Rf 449 (725)
...|+||||||.++..+... +.+.+...+++.|+++++. ..+.+|++......+ -..+-|.|..||
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~k-p~DlIPEl~GR~ 324 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAK-PSDLIPELQGRF 324 (441)
T ss_pred cCCEEEEEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCC-hhhccHHHhCcc
Confidence 45699999999998655221 1123455688999998874 456788776533211 124679999999
Q ss_pred -ceEEecCCCHHHHHHHH----HHHHHHHHh---cc--CCCCCHHHHHHHHHHhhh
Q 004878 450 -QPVLISEPSQEDAVRIL----LGLREKYEA---HH--NCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 450 -~~I~i~~Ps~ee~~~IL----~~~~~~~~~---~~--~~~i~~~~l~~l~~~s~~ 495 (725)
..+.+.+++.++...|| ..+.++|.. .. .+.++++++..+++.+..
T Consensus 325 Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 325 PIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 57899999999999999 456666642 23 356899999999998764
No 132
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.46 E-value=2.5e-12 Score=127.06 Aligned_cols=193 Identities=16% Similarity=0.209 Sum_probs=146.6
Q ss_pred hhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeE--------EE
Q 004878 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI--------MS 351 (725)
Q Consensus 280 l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l--------~~ 351 (725)
|.++++|..++.++++++.-..+....+....+|+++|||+|+||.|.+.++.+++....++..-...+- ++
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE 82 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE 82 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence 7789999999999999999999998888777899999999999999999999999865443321111111 11
Q ss_pred ee---------hhhhhccccccchHHHHHHHHHHHHHhc---------CCeEEEEccchhhhhCCCCCCCCCCCcHHHHH
Q 004878 352 LD---------MGLLMAGAKERGELEARVTTLISEIQKS---------GDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (725)
Q Consensus 352 ld---------~~~l~~g~~~~g~~~~~l~~~~~~~~~~---------~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (725)
++ +.....|..+ .-.+++++.++.+. .-.+++|.|+|.| ..|++.
T Consensus 83 istvsS~yHlEitPSDaG~~D----RvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-------------T~dAQ~ 145 (351)
T KOG2035|consen 83 ISTVSSNYHLEITPSDAGNYD----RVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-------------TRDAQH 145 (351)
T ss_pred EEEecccceEEeChhhcCccc----HHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-------------hHHHHH
Confidence 11 1111122222 22345555555432 2458999999999 668899
Q ss_pred HHhhhhc--CCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 414 LLKPSLG--RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 414 ~L~~~l~--~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
.|+..++ .+.+++|..+|... .+-+++++||-.|.++.|+.+|...+|...+.+ .++.++.+.+..+++
T Consensus 146 aLRRTMEkYs~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 146 ALRRTMEKYSSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHhcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHH
Confidence 9998888 47788888888765 677899999999999999999999999988874 478899999999999
Q ss_pred Hhhhhcc
Q 004878 492 LSARYIS 498 (725)
Q Consensus 492 ~s~~~i~ 498 (725)
.+.|...
T Consensus 217 kS~~nLR 223 (351)
T KOG2035|consen 217 KSNRNLR 223 (351)
T ss_pred HhcccHH
Confidence 9887653
No 133
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.46 E-value=5.3e-12 Score=128.22 Aligned_cols=190 Identities=14% Similarity=0.186 Sum_probs=121.8
Q ss_pred CCCccc--ccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccc
Q 004878 288 LIDPVI--GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365 (725)
Q Consensus 288 ~l~~li--G~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g 365 (725)
+||+++ +.+..++++.+++......+++|+||+|||||++++++++..... +.+++.+++..+...
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~----- 80 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA----- 80 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh-----
Confidence 344444 356677888887766777899999999999999999999987542 556788888776521
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHH
Q 004878 366 ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKAL 445 (725)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L 445 (725)
...++..... ..+|+|||+|.+.... .....+..++......+. .+|.+++... .......+.|
T Consensus 81 -----~~~~~~~~~~--~~lLvIDdi~~l~~~~-------~~~~~L~~~l~~~~~~~~-~iIits~~~~-~~~~~~~~~L 144 (226)
T TIGR03420 81 -----DPEVLEGLEQ--ADLVCLDDVEAIAGQP-------EWQEALFHLYNRVREAGG-RLLIAGRAAP-AQLPLRLPDL 144 (226)
T ss_pred -----HHHHHhhccc--CCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHcCC-eEEEECCCCh-HHCCcccHHH
Confidence 1223332222 3499999999983210 002233444433333444 4555544332 1111122788
Q ss_pred Hcccc---eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q 004878 446 ARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 446 ~~Rf~---~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~ 515 (725)
.+||. .|.+++|+.+++..+++.... ..++.+++++++.++..+.+.+ ..+..+++.+..
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~----~~~~~~~~~~l~~L~~~~~gn~------r~L~~~l~~~~~ 207 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAA----RRGLQLPDEVADYLLRHGSRDM------GSLMALLDALDR 207 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCCH------HHHHHHHHHHHH
Confidence 88873 789999999999999876654 3467899999999888655443 355566555443
No 134
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.45 E-value=4.7e-12 Score=138.36 Aligned_cols=210 Identities=21% Similarity=0.290 Sum_probs=137.2
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc------
Q 004878 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~------ 359 (725)
+.++||+++++.|...+.. ....+++|+||||+|||++++.+++.+.... +.......+++++|.....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCCceEEEEEECCCCCCHHHHHH
Confidence 4689999999999998764 4557899999999999999999998875311 0000114566777643210
Q ss_pred ---------ccc--ccc-hHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh-----hcC
Q 004878 360 ---------GAK--ERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS-----LGR 421 (725)
Q Consensus 360 ---------g~~--~~g-~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~-----l~~ 421 (725)
+.. ..+ ...+.+..+++.+.. ..+.||+|||+|.+.+. ..++...|..+ +..
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----------~~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----------DDDLLYQLSRARSNGDLDN 163 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----------CcHHHHhHhccccccCCCC
Confidence 110 111 233344555555543 45689999999999621 11233333333 123
Q ss_pred CCeEEEEeccchhhhhhhcccHHHHccc--ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhccc
Q 004878 422 GELQCIASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (725)
Q Consensus 422 ~~v~vI~at~~~~~~~~~~ld~~L~~Rf--~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~ 499 (725)
..+.+|+++|...+.. .+++.+.+|| ..|.|++++.++..+|++..++.. ..+..+++++++.++..+.+..+
T Consensus 164 ~~v~lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~G- 238 (365)
T TIGR02928 164 AKVGVIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQEHG- 238 (365)
T ss_pred CeEEEEEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHhcC-
Confidence 5688888888765432 5788899998 479999999999999998876532 12345788888888776654322
Q ss_pred CCCchhHHHHHHHHHHHH
Q 004878 500 RYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 500 r~lp~~ai~ll~~a~~~~ 517 (725)
.+..+++++..|...+
T Consensus 239 --d~R~al~~l~~a~~~a 254 (365)
T TIGR02928 239 --DARKAIDLLRVAGEIA 254 (365)
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 2346778887776544
No 135
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=4.3e-12 Score=140.83 Aligned_cols=191 Identities=18% Similarity=0.177 Sum_probs=120.8
Q ss_pred cCCCccc-ccHHH--HHHHHHHHhcC--CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc
Q 004878 287 ELIDPVI-GRETE--IQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (725)
Q Consensus 287 ~~l~~li-G~~~~--i~~l~~~L~~~--~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~ 361 (725)
.+|+.++ |.... ...+..+.... ..++++|+|++|+|||+|++++++++.... .+..++++++..+....
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~~ 186 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARKA 186 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHH
Confidence 4666655 54332 33333333322 235688999999999999999999875421 25778888876654211
Q ss_pred cccchHH---HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhh
Q 004878 362 KERGELE---ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438 (725)
Q Consensus 362 ~~~g~~~---~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~ 438 (725)
...+. ..+..+.+... ...+|+|||++.+.+.. .....+..++....+.++.+||.+...+. ..
T Consensus 187 --~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~~k~-------~~~e~lf~l~N~~~~~~k~iIltsd~~P~--~l 253 (450)
T PRK14087 187 --VDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLSYKE-------KTNEIFFTIFNNFIENDKQLFFSSDKSPE--LL 253 (450)
T ss_pred --HHHHHHhhhHHHHHHHHhc--cCCEEEEeccccccCCH-------HHHHHHHHHHHHHHHcCCcEEEECCCCHH--HH
Confidence 11111 11222222222 34599999999884221 12345666666666777654444444433 12
Q ss_pred hcccHHHHcccc---eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 439 FEKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 439 ~~ld~~L~~Rf~---~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
-.+++.|.+||. .+.+.+|+.+++.+||+..++.. .....++++++++++..+.+.+
T Consensus 254 ~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~--gl~~~l~~evl~~Ia~~~~gd~ 313 (450)
T PRK14087 254 NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ--NIKQEVTEEAINFISNYYSDDV 313 (450)
T ss_pred hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHccCCCH
Confidence 356899999995 79999999999999999887742 1123799999999999887653
No 136
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.8e-12 Score=143.51 Aligned_cols=197 Identities=20% Similarity=0.283 Sum_probs=139.0
Q ss_pred cccccHHHHHHHHHHHhc-----C-CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-----
Q 004878 291 PVIGRETEIQRIIQILCR-----R-TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----- 359 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~-----~-~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~----- 359 (725)
+-.|.++..+++++.|.. . .+.-++|+||||||||+|++.+|+.+ +..++.+.++.+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 668999999999998754 2 22345799999999999999999999 77888887766532
Q ss_pred cc--cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-----------------
Q 004878 360 GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----------------- 420 (725)
Q Consensus 360 g~--~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----------------- 420 (725)
|. .|.|.+..++-+-+..+....| +++|||||.+... -+| |-..+|+..|.
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss---~rG------DPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS---FRG------DPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC---CCC------ChHHHHHhhcCHhhcCchhhccccCccc
Confidence 21 3566666666666666655555 7778999999322 111 22334443332
Q ss_pred CCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHH-HHHHHhcc-----CCCCCHHHHHHHHHHhh
Q 004878 421 RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL-REKYEAHH-----NCKFTLEAINAAVHLSA 494 (725)
Q Consensus 421 ~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~-~~~~~~~~-----~~~i~~~~l~~l~~~s~ 494 (725)
=.+|.+|+|+|..+ .+..+|+.|+.+|++.-++.+|..+|-+.. ..+....+ .+.++++++..+++...
T Consensus 464 LS~VmFiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YT 538 (782)
T COG0466 464 LSKVMFIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYT 538 (782)
T ss_pred hhheEEEeecCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHh
Confidence 14589999999876 789999999999999999999999998873 33333333 45799999999998776
Q ss_pred hhcccCCCchhHHHHHHH
Q 004878 495 RYISDRYLPDKAIDLVDE 512 (725)
Q Consensus 495 ~~i~~r~lp~~ai~ll~~ 512 (725)
|..+-|.|......++..
T Consensus 539 REAGVR~LeR~i~ki~RK 556 (782)
T COG0466 539 REAGVRNLEREIAKICRK 556 (782)
T ss_pred HhhhhhHHHHHHHHHHHH
Confidence 665555544433334333
No 137
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.44 E-value=4e-12 Score=138.69 Aligned_cols=192 Identities=26% Similarity=0.307 Sum_probs=125.6
Q ss_pred cccccHHHHHHHHHHHhc----------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 291 PVIGRETEIQRIIQILCR----------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~----------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
.+|||++.++.+...+.. ....|+||+||||||||++|+.+|..+ +.+++.+|+
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~ 141 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADA 141 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecch
Confidence 389999999988666532 134789999999999999999999887 566777777
Q ss_pred hhhhccccccch-HHHHHHHHHHH----HHhcCCeEEEEccchhhhhCCCCCCC-CCCCcHHHHHHHhhhhcCC------
Q 004878 355 GLLMAGAKERGE-LEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLGRG------ 422 (725)
Q Consensus 355 ~~l~~g~~~~g~-~~~~l~~~~~~----~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~~~------ 422 (725)
..+.. ..+.|. .+..+..+++. +....+.||||||||.+...+...+. .+.++..+++.|+.+|+..
T Consensus 142 ~~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 142 TTLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hhccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 66542 224443 33334444332 23446789999999999765221111 1123346888888888631
Q ss_pred ---------CeEEEEeccc--------h-------------------------------hhhh--------hhcccHHHH
Q 004878 423 ---------ELQCIASTTQ--------D-------------------------------EHRT--------QFEKDKALA 446 (725)
Q Consensus 423 ---------~v~vI~at~~--------~-------------------------------~~~~--------~~~ld~~L~ 446 (725)
.+++|.|+|. . .+.+ .+.+.|.|.
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 1233444333 0 0000 012468899
Q ss_pred cccc-eEEecCCCHHHHHHHHH----HHHHHHHh-----ccCCCCCHHHHHHHHHHh
Q 004878 447 RRFQ-PVLISEPSQEDAVRILL----GLREKYEA-----HHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 447 ~Rf~-~I~i~~Ps~ee~~~IL~----~~~~~~~~-----~~~~~i~~~~l~~l~~~s 493 (725)
.|+. ++.|.+.+.+++.+|+. .+.++|.. ...+.+++++++++++.+
T Consensus 301 gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 301 GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 9995 77888999999999997 35554431 234578999999999874
No 138
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=1.9e-11 Score=135.00 Aligned_cols=207 Identities=16% Similarity=0.188 Sum_probs=136.9
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-------
Q 004878 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~------- 358 (725)
+.++||+++++++...+.. ....+++|+||||+|||++++.+++.+.... .+..++++++....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHH
Confidence 5689999999999988744 3456799999999999999999999885432 24566777764321
Q ss_pred ------cc--ccccc-hHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc---CCCeE
Q 004878 359 ------AG--AKERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQ 425 (725)
Q Consensus 359 ------~g--~~~~g-~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---~~~v~ 425 (725)
.+ ....+ .+.+.+..+.+.+.. ..+.||+|||+|.+... ... +....|...+. ..++.
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~--------~~~-~~l~~l~~~~~~~~~~~v~ 175 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEK--------EGN-DVLYSLLRAHEEYPGARIG 175 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhcc--------CCc-hHHHHHHHhhhccCCCeEE
Confidence 01 01111 234444555554443 34689999999999621 111 23333333332 23677
Q ss_pred EEEeccchhhhhhhcccHHHHccc--ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCc
Q 004878 426 CIASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 426 vI~at~~~~~~~~~~ld~~L~~Rf--~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp 503 (725)
+|++++...... .+++.+.+|| ..|.+++++.++..+|++..+... .....+++++++.+++.+.+..+ -.
T Consensus 176 vI~i~~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~G---d~ 248 (394)
T PRK00411 176 VIGISSDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--FYPGVVDDEVLDLIADLTAREHG---DA 248 (394)
T ss_pred EEEEECCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--cccCCCCHhHHHHHHHHHHHhcC---cH
Confidence 888888665333 3678888888 478999999999999998876532 22346899999999988865322 12
Q ss_pred hhHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRA 517 (725)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (725)
..+++++..|+..+
T Consensus 249 r~a~~ll~~a~~~a 262 (394)
T PRK00411 249 RVAIDLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777666544
No 139
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.7e-12 Score=142.76 Aligned_cols=184 Identities=20% Similarity=0.282 Sum_probs=132.9
Q ss_pred CcccccHHHHHHHHHHHhcC------CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc----
Q 004878 290 DPVIGRETEIQRIIQILCRR------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---- 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~------~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~---- 359 (725)
++-.|.++..+++.+.+... .+.-++|+||||||||++++.+|+.+ |..++.+.++.+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhh
Confidence 36789999999999987652 22336799999999999999999999 77888887766531
Q ss_pred -c--ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----------------
Q 004878 360 -G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---------------- 420 (725)
Q Consensus 360 -g--~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---------------- 420 (725)
| ..|.|.+..++-+.+..+...+| +++|||||.+- .|.. -|-...|+.+|.
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG-~g~q--------GDPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG-SGHQ--------GDPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC-CCCC--------CChHHHHHHhcChhhccchhhhcccccc
Confidence 2 13667777777777777776666 66679999993 2221 122334444332
Q ss_pred -CCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHH-HHHHhccC-----CCCCHHHHHHHHHHh
Q 004878 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHHN-----CKFTLEAINAAVHLS 493 (725)
Q Consensus 421 -~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~-~~~~~~~~-----~~i~~~~l~~l~~~s 493 (725)
=.+|.+|+|.|..+ .+.++|+.|+..|++.-+..+|..+|-+..+ .+....++ +.+++.++..+++..
T Consensus 551 DLSkVLFicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 551 DLSKVLFICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred chhheEEEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 14689999999877 8899999999999999999999999987743 33333333 568888877776654
Q ss_pred hhhcc
Q 004878 494 ARYIS 498 (725)
Q Consensus 494 ~~~i~ 498 (725)
-|..+
T Consensus 626 crEaG 630 (906)
T KOG2004|consen 626 CREAG 630 (906)
T ss_pred HHHHh
Confidence 44433
No 140
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.44 E-value=2.6e-12 Score=133.11 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccch---------HH
Q 004878 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE---------LE 368 (725)
Q Consensus 298 ~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~---------~~ 368 (725)
.++++...+. .+.+++|+||||||||++|+++++.+ +.+++.+++..-.......|. ..
T Consensus 10 l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~ 77 (262)
T TIGR02640 10 VTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHD 77 (262)
T ss_pred HHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHH
Confidence 3444444444 36689999999999999999999876 556666655331110000000 00
Q ss_pred HHH----------------HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC----------
Q 004878 369 ARV----------------TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (725)
Q Consensus 369 ~~l----------------~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------- 422 (725)
..+ ..++..+. .+.+|+|||++.+ ..++++.|+.+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~-------------~~~~q~~Ll~~Le~~~~~i~~~~~~ 142 (262)
T TIGR02640 78 QFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRS-------------KPETNNVLLSVFEEGVLELPGKRGT 142 (262)
T ss_pred HHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhC-------------CHHHHHHHHHHhcCCeEEccCCCCC
Confidence 000 01111122 3469999999998 456788888877532
Q ss_pred --------CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhh
Q 004878 423 --------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 423 --------~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~ 494 (725)
.+++|+|+|+..|.....++++|.+||..+.++.|+.++..+|++... .+.++.++.++++..
T Consensus 143 ~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~ 213 (262)
T TIGR02640 143 SRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVR 213 (262)
T ss_pred CceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHH
Confidence 467999999887766667789999999999999999999999886532 357778888877766
Q ss_pred hhc
Q 004878 495 RYI 497 (725)
Q Consensus 495 ~~i 497 (725)
..-
T Consensus 214 ~~R 216 (262)
T TIGR02640 214 EFR 216 (262)
T ss_pred HHH
Confidence 543
No 141
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.43 E-value=6.8e-12 Score=127.56 Aligned_cols=173 Identities=14% Similarity=0.165 Sum_probs=112.8
Q ss_pred hcCCCccc-cc-HHHHHHHHHHHhc-CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc
Q 004878 286 EELIDPVI-GR-ETEIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (725)
Q Consensus 286 ~~~l~~li-G~-~~~i~~l~~~L~~-~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~ 362 (725)
+.+||+++ |. +..+..+.++... ....+++|+||+|||||++++++++..... +..++.+++......
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~~-- 84 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLLA-- 84 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHHH--
Confidence 34567766 33 4444555554442 445789999999999999999999987542 566777776654310
Q ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhccc
Q 004878 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442 (725)
Q Consensus 363 ~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld 442 (725)
+.. .....+|+|||+|.+-. .....+...+...-+.+..++|.+++..+ ....+.
T Consensus 85 ------------~~~--~~~~~~liiDdi~~l~~---------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~--~~~~l~ 139 (227)
T PRK08903 85 ------------FDF--DPEAELYAVDDVERLDD---------AQQIALFNLFNRVRAHGQGALLVAGPAAP--LALPLR 139 (227)
T ss_pred ------------Hhh--cccCCEEEEeChhhcCc---------hHHHHHHHHHHHHHHcCCcEEEEeCCCCH--HhCCCC
Confidence 011 12346899999998821 11223334444333455544555554432 122456
Q ss_pred HHHHccc---ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 443 KALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 443 ~~L~~Rf---~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
+.|.+|| ..|.+++|+.++...++..+.. ..++.++++++++++..+.+.
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~----~~~v~l~~~al~~L~~~~~gn 192 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAA----ERGLQLADEVPDYLLTHFRRD 192 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCC
Confidence 8888887 4899999999888888876655 457899999999999866544
No 142
>PRK06620 hypothetical protein; Validated
Probab=99.42 E-value=3.8e-12 Score=127.40 Aligned_cols=136 Identities=11% Similarity=0.118 Sum_probs=100.2
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccc
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEi 391 (725)
++++|+||+|+|||||++++++.. +.. .+.... . ..... ....+|+||||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----------~~~--~~~~~~------~-------~~~~~-----~~~d~lliDdi 94 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----------NAY--IIKDIF------F-------NEEIL-----EKYNAFIIEDI 94 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----------CCE--Ecchhh------h-------chhHH-----hcCCEEEEecc
Confidence 558999999999999999987754 211 111000 0 00111 12358999999
Q ss_pred hhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccc---eEEecCCCHHHHHHHHHH
Q 004878 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ---PVLISEPSQEDAVRILLG 468 (725)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~---~I~i~~Ps~ee~~~IL~~ 468 (725)
|.+- ...+..++..+.+.++.++|++++.+. .+.+ ++|++||. .+.+.+|+.+++..+++.
T Consensus 95 ~~~~------------~~~lf~l~N~~~e~g~~ilits~~~p~---~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 95 ENWQ------------EPALLHIFNIINEKQKYLLLTSSDKSR---NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred ccch------------HHHHHHHHHHHHhcCCEEEEEcCCCcc---ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 9661 235677777777889888888887776 3346 89999996 899999999999999988
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 469 LREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 469 ~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
.+.. .++.++++++++++..+.+.+
T Consensus 159 ~~~~----~~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 159 HFSI----SSVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred HHHH----cCCCCCHHHHHHHHHHccCCH
Confidence 7663 478999999999999887654
No 143
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.42 E-value=1.5e-11 Score=131.76 Aligned_cols=164 Identities=18% Similarity=0.208 Sum_probs=114.7
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc--ccchHHHHHHHHHHHHHhcCCeEEE
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK--ERGELEARVTTLISEIQKSGDVILF 387 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~--~~g~~~~~l~~~~~~~~~~~~~IL~ 387 (725)
..+.++|+|+.|+|||+|+++++.+..... .+.++++++...+....- .+..-.+.++... .-.+|+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y------~~dlll 180 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY------SLDLLL 180 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh------ccCeee
Confidence 367789999999999999999999986532 255677776554431100 0000011112111 123899
Q ss_pred EccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccc---eEEecCCCHHHHHH
Q 004878 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ---PVLISEPSQEDAVR 464 (725)
Q Consensus 388 IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~---~I~i~~Ps~ee~~~ 464 (725)
||||+.+.+.. ....++.+++..+.+.++.+++.+...+. ..-.+.+.|++||. .+.|.+|+.+.+..
T Consensus 181 IDDiq~l~gk~-------~~qeefFh~FN~l~~~~kqIvltsdr~P~--~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 181 IDDIQFLAGKE-------RTQEEFFHTFNALLENGKQIVLTSDRPPK--ELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred echHhHhcCCh-------hHHHHHHHHHHHHHhcCCEEEEEcCCCch--hhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 99999995442 22567888888888888855555544443 23357799999994 79999999999999
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 465 ILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 465 IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
||+...+ ..++.++++++.+++....+.+
T Consensus 252 iL~kka~----~~~~~i~~ev~~~la~~~~~nv 280 (408)
T COG0593 252 ILRKKAE----DRGIEIPDEVLEFLAKRLDRNV 280 (408)
T ss_pred HHHHHHH----hcCCCCCHHHHHHHHHHhhccH
Confidence 9988665 5689999999999998876654
No 144
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.40 E-value=4.1e-12 Score=149.23 Aligned_cols=182 Identities=17% Similarity=0.240 Sum_probs=123.4
Q ss_pred cccccHHHHHHHHHHHhc------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-----
Q 004878 291 PVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----- 359 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~----- 359 (725)
+..|.++..+++.+++.. ..+..++|+||||+|||++++.++..+ +..++.++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHHHhc
Confidence 589999999999987763 244568999999999999999999987 44555555443221
Q ss_pred cc--cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC----------------
Q 004878 360 GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------- 421 (725)
Q Consensus 360 g~--~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---------------- 421 (725)
|. .+.|.....+...+..+... +.|++|||+|.+.... ..+..+.|+.+++.
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~-~~villDEidk~~~~~---------~g~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVK-NPLFLLDEIDKMSSDM---------RGDPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCC-CCEEEEEChhhccccc---------CCCHHHHHHHHhccccEEEEeccccccccc
Confidence 11 12233323333333333222 3488999999994321 11345566666543
Q ss_pred -CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHH-HH-Hhc----cCCCCCHHHHHHHHHHhh
Q 004878 422 -GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE-KY-EAH----HNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 422 -~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~-~~-~~~----~~~~i~~~~l~~l~~~s~ 494 (725)
+++.+|+|+|.. .++++|++||..|.+..++.++..+|.+..+. +. ..+ ..+.++++++..+++.+.
T Consensus 463 ls~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 463 LSDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCceEEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 567888877653 58999999999999999999999999988663 22 211 246789999999987444
Q ss_pred hhcc
Q 004878 495 RYIS 498 (725)
Q Consensus 495 ~~i~ 498 (725)
+..+
T Consensus 537 ~e~G 540 (784)
T PRK10787 537 REAG 540 (784)
T ss_pred cccC
Confidence 3333
No 145
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=7.4e-12 Score=134.18 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=132.5
Q ss_pred hhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCC----CcccC----CC-------
Q 004878 284 ASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV----PVFLL----SK------- 347 (725)
Q Consensus 284 ~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~----p~~l~----~~------- 347 (725)
..|..++.++|+++.+..+...+...+..| +||+||+|+|||++|+.+|+.+..... |.... .+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 467788999999999999999998877655 889999999999999999999865211 11110 00
Q ss_pred -----eEEEeehhh-hhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhh
Q 004878 348 -----RIMSLDMGL-LMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (725)
Q Consensus 348 -----~l~~ld~~~-l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (725)
.++.+.... ...+.....-..+.++.+.+.+. .++..|++|||+|.+ ....+|.|++
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-------------~~~aanaLLk 163 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-------------NRNAANAILK 163 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-------------CHHHHHHHHH
Confidence 011111000 00000000001233444444443 245679999999999 4466788888
Q ss_pred hhcCC--CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhh
Q 004878 418 SLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 418 ~l~~~--~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~ 495 (725)
.+++. ...+|..++... .+.|.+++||+.+.+++|+.++...+|..... ...++++++..++..+.+
T Consensus 164 ~LEEpp~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~------~~~~~~~~~~~i~~~s~G 232 (351)
T PRK09112 164 TLEEPPARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGS------SQGSDGEITEALLQRSKG 232 (351)
T ss_pred HHhcCCCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhc------ccCCCHHHHHHHHHHcCC
Confidence 88863 345555555544 56799999999999999999999999876321 112678888888887765
Q ss_pred hcccCCCchhHHHHHHHH
Q 004878 496 YISDRYLPDKAIDLVDEA 513 (725)
Q Consensus 496 ~i~~r~lp~~ai~ll~~a 513 (725)
. |..++.++...
T Consensus 233 ~------pr~Al~ll~~~ 244 (351)
T PRK09112 233 S------VRKALLLLNYG 244 (351)
T ss_pred C------HHHHHHHHhcC
Confidence 4 45677776543
No 146
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=8.4e-12 Score=134.46 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=129.5
Q ss_pred hhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCccc-----------C------
Q 004878 284 ASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL-----------L------ 345 (725)
Q Consensus 284 ~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l-----------~------ 345 (725)
.+|..+++++|++..++.|...+.+.+..| +||+||+|+||+++|..+|+.+......... .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 467888999999999999999999877666 7899999999999999999998643211000 0
Q ss_pred -------CCeEEEeehhhhhccccccch-HHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHH
Q 004878 346 -------SKRIMSLDMGLLMAGAKERGE-LEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (725)
Q Consensus 346 -------~~~l~~ld~~~l~~g~~~~g~-~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (725)
...++.+....-..+.+.... ..+.++.+.+.+. ..++.|++|||+|.+ ....+|
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------------~~~aan 159 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------------NANAAN 159 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------------CHHHHH
Confidence 011122211000000000000 1233566555543 246789999999999 457788
Q ss_pred HHhhhhcCC--CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 414 LLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 414 ~L~~~l~~~--~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
.|++.+++. ..++|.+|+... .+.+.+++||+.+.|.+|+.++..++|.... ...+++.+..++.
T Consensus 160 aLLK~LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~~--------~~~~~~~~~~l~~ 226 (365)
T PRK07471 160 ALLKVLEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAAG--------PDLPDDPRAALAA 226 (365)
T ss_pred HHHHHHhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHhc--------ccCCHHHHHHHHH
Confidence 999999873 456666666654 5678999999999999999999888875532 2334444566667
Q ss_pred HhhhhcccCCCchhHHHHHH
Q 004878 492 LSARYISDRYLPDKAIDLVD 511 (725)
Q Consensus 492 ~s~~~i~~r~lp~~ai~ll~ 511 (725)
++.+. |..++.+++
T Consensus 227 ~s~Gs------p~~Al~ll~ 240 (365)
T PRK07471 227 LAEGS------VGRALRLAG 240 (365)
T ss_pred HcCCC------HHHHHHHhc
Confidence 66653 345555543
No 147
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=8.9e-12 Score=141.74 Aligned_cols=223 Identities=12% Similarity=0.077 Sum_probs=141.1
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCC-----CCceEEcCCCChHHHHHHHHHHHHHhcC---CCccc-C-C
Q 004878 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTK-----NNPILLGESGVGKTAIAEGLAIRIVQAE---VPVFL-L-S 346 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~-----~~iLL~Gp~G~GKT~la~~la~~l~~~~---~p~~l-~-~ 346 (725)
..+|.++++|..+++++|+++.++.|..++..... .-++|+||+|+||||+++.++..+...- ..... . .
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 35799999999999999999999999988875322 2389999999999999999998873210 00000 0 0
Q ss_pred CeEEEeehhhhhccccccchHHHHHHHHHHHHH----------hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHh
Q 004878 347 KRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416 (725)
Q Consensus 347 ~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~ 416 (725)
...+.+ ...+.........-.+.++.++..+. .....||||||++.++.. ....++++|+
T Consensus 151 ~~~~~~-~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r---------~~~~lq~lLr 220 (637)
T TIGR00602 151 KNDHKV-TLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR---------DTRALHEILR 220 (637)
T ss_pred cccccc-chhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---------hHHHHHHHHH
Confidence 000000 00000000000011223444444443 134679999999988632 1234666777
Q ss_pred -hhhcCCCeEEEEeccchhh------hhhhc----ccHHHHc--ccceEEecCCCHHHHHHHHHHHHHHHHhc--cCCCC
Q 004878 417 -PSLGRGELQCIASTTQDEH------RTQFE----KDKALAR--RFQPVLISEPSQEDAVRILLGLREKYEAH--HNCKF 481 (725)
Q Consensus 417 -~~l~~~~v~vI~at~~~~~------~~~~~----ld~~L~~--Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~--~~~~i 481 (725)
.+.+.+.+.+|+++|...+ ...+. +.+++.+ |...|.|.+.+..+..+.|+.++...... ....+
T Consensus 221 ~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 221 WKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred HHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 6777888888887774432 11122 4478887 55789999999999999998888754221 12223
Q ss_pred -CHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q 004878 482 -TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 482 -~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~ 515 (725)
++++++.++..+.+-+. .|+..|.-+|.
T Consensus 301 p~~~~l~~I~~~s~GDiR------sAIn~LQf~~~ 329 (637)
T TIGR00602 301 PKKTSVELLCQGCSGDIR------SAINSLQFSSS 329 (637)
T ss_pred CCHHHHHHHHHhCCChHH------HHHHHHHHHHh
Confidence 57888888887776653 77888877654
No 148
>PRK09087 hypothetical protein; Validated
Probab=99.36 E-value=2.8e-11 Score=122.27 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=102.9
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccc
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEi 391 (725)
+.++|+||+|+|||||+++++... +.. +++...+. ..++..+.. .+|+|||+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~----------~~~--~i~~~~~~-------------~~~~~~~~~---~~l~iDDi 96 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS----------DAL--LIHPNEIG-------------SDAANAAAE---GPVLIEDI 96 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc----------CCE--EecHHHcc-------------hHHHHhhhc---CeEEEECC
Confidence 348999999999999999988754 222 33332111 112222221 37889999
Q ss_pred hhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHccc---ceEEecCCCHHHHHHHHHH
Q 004878 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF---QPVLISEPSQEDAVRILLG 468 (725)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf---~~I~i~~Ps~ee~~~IL~~ 468 (725)
+.+. .....+.+++....+.++.++|++++.+.+-. ...+.|++|| ..+++.+|+.+++..+|+.
T Consensus 97 ~~~~----------~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~--~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 97 DAGG----------FDETGLFHLINSVRQAGTSLLMTSRLWPSSWN--VKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred CCCC----------CCHHHHHHHHHHHHhCCCeEEEECCCChHHhc--cccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 9772 12445777787888888888888777665221 2368899999 6899999999999999998
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 469 LREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 469 ~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
.++. .++.+++++++++++.+.+.+
T Consensus 165 ~~~~----~~~~l~~ev~~~La~~~~r~~ 189 (226)
T PRK09087 165 LFAD----RQLYVDPHVVYYLVSRMERSL 189 (226)
T ss_pred HHHH----cCCCCCHHHHHHHHHHhhhhH
Confidence 8874 478999999999999887654
No 149
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.34 E-value=1.3e-11 Score=146.56 Aligned_cols=123 Identities=20% Similarity=0.276 Sum_probs=94.3
Q ss_pred CCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCC
Q 004878 589 PAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668 (725)
Q Consensus 589 ~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPp 668 (725)
+..-....+..++..++++||.+.+.+ ...+..+++.|.+.++||+++++.|...+......- .+..| ++||+|||
T Consensus 281 ~~~~~~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-~~~~~--~lll~Gpp 356 (775)
T TIGR00763 281 PSSSEFTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG-KMKGP--ILCLVGPP 356 (775)
T ss_pred CCCchHHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CCCCc--eEEEECCC
Confidence 344455677889999999999988766 677899999999999999999999988664332111 11111 79999999
Q ss_pred CCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccccc
Q 004878 669 GVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYL 721 (725)
Q Consensus 669 GtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~ 721 (725)
|||||++|++||+.+ +.++++++++.+.+ ++.+.|...+|+|...+.
T Consensus 357 G~GKT~lAk~iA~~l---~~~~~~i~~~~~~~---~~~i~g~~~~~~g~~~g~ 403 (775)
T TIGR00763 357 GVGKTSLGKSIAKAL---NRKFVRFSLGGVRD---EAEIRGHRRTYVGAMPGR 403 (775)
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEeCCCccc---HHHHcCCCCceeCCCCch
Confidence 999999999999998 67899999887644 455666666666665443
No 150
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.33 E-value=5.4e-11 Score=129.07 Aligned_cols=193 Identities=22% Similarity=0.285 Sum_probs=124.5
Q ss_pred cccccHHHHHHHHHHHhc-----------C-------CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 291 PVIGRETEIQRIIQILCR-----------R-------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~-----------~-------~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.+|||++.++.+...+++ . .+.++||+||||||||++|+++|..+ +.++..+
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~ 147 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIA 147 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEe
Confidence 479999999988776631 1 13579999999999999999999887 4455666
Q ss_pred ehhhhhccccccch-HHHHHHHHHHH----HHhcCCeEEEEccchhhhhCCCCCCC-CCCCcHHHHHHHhhhhcC-----
Q 004878 353 DMGLLMAGAKERGE-LEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLGR----- 421 (725)
Q Consensus 353 d~~~l~~g~~~~g~-~~~~l~~~~~~----~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~~----- 421 (725)
++..+.. ..+.|. .+..+..++.. +....+.||||||+|.+.......+. .+..+.++++.|+++|+.
T Consensus 148 da~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v 226 (413)
T TIGR00382 148 DATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANV 226 (413)
T ss_pred chhhccc-cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceec
Confidence 6655432 224443 33344444332 23345679999999999763221110 012234688888888841
Q ss_pred ----------CCeEEEEeccch-------------------------------------hhh------h--hhcccHHHH
Q 004878 422 ----------GELQCIASTTQD-------------------------------------EHR------T--QFEKDKALA 446 (725)
Q Consensus 422 ----------~~v~vI~at~~~-------------------------------------~~~------~--~~~ld~~L~ 446 (725)
...++|.|+|.. ++. . .+.+.|.|.
T Consensus 227 ~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl 306 (413)
T TIGR00382 227 PPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI 306 (413)
T ss_pred ccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh
Confidence 123456655540 000 0 012558889
Q ss_pred cccc-eEEecCCCHHHHHHHHHH----HHHHHHh-----ccCCCCCHHHHHHHHHHhh
Q 004878 447 RRFQ-PVLISEPSQEDAVRILLG----LREKYEA-----HHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 447 ~Rf~-~I~i~~Ps~ee~~~IL~~----~~~~~~~-----~~~~~i~~~~l~~l~~~s~ 494 (725)
.|+. ++.+.+.+.+++.+|+.. +.++|.. ...+.+++++++++++.+.
T Consensus 307 gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~ 364 (413)
T TIGR00382 307 GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKAL 364 (413)
T ss_pred CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCC
Confidence 9995 677889999999999886 4555532 2345789999999998753
No 151
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.32 E-value=1.1e-10 Score=119.77 Aligned_cols=214 Identities=20% Similarity=0.223 Sum_probs=139.1
Q ss_pred CcccccH---HHHHHHHHHHhc---CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh-------
Q 004878 290 DPVIGRE---TEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL------- 356 (725)
Q Consensus 290 ~~liG~~---~~i~~l~~~L~~---~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~------- 356 (725)
+..||.. +.+++|.+++.. .+..|+||+|++|.|||++++.+.+......-+. ....+|+.+.+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecCCCCChHHH
Confidence 3456654 345566666654 3457899999999999999999998653221111 1234666665422
Q ss_pred -------hhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEe
Q 004878 357 -------LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429 (725)
Q Consensus 357 -------l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~a 429 (725)
+....+........-..++.-++..+.-+|+|||+|.++.... ....++.|+|+.+.+.-++.+|+.
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhhccCCCeEEe
Confidence 1122222233333333344555566778999999999753211 236678999999988888999998
Q ss_pred ccchhhhhhhcccHHHHcccceEEecCCCHH-HHHHHHHHHHHHHHhccCCC-CCHHHHHHHHHHhhhhcccCCCchhHH
Q 004878 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQE-DAVRILLGLREKYEAHHNCK-FTLEAINAAVHLSARYISDRYLPDKAI 507 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~e-e~~~IL~~~~~~~~~~~~~~-i~~~~l~~l~~~s~~~i~~r~lp~~ai 507 (725)
.+.+-+. .+.-|+++.+||..+.++.+..+ +-..+|..+-..+.....-. .+++....+...+.+.+ ++..
T Consensus 187 Gt~~A~~-al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i------G~l~ 259 (302)
T PF05621_consen 187 GTREAYR-ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI------GELS 259 (302)
T ss_pred ccHHHHH-HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch------HHHH
Confidence 8887765 56789999999999999987543 44445544444332222222 35566788989988877 4778
Q ss_pred HHHHHHHHHH
Q 004878 508 DLVDEAGSRA 517 (725)
Q Consensus 508 ~ll~~a~~~~ 517 (725)
.++..|+..+
T Consensus 260 ~ll~~aA~~A 269 (302)
T PF05621_consen 260 RLLNAAAIAA 269 (302)
T ss_pred HHHHHHHHHH
Confidence 8887777655
No 152
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=5.1e-11 Score=127.06 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=120.2
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccch
Q 004878 288 LIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~ 366 (725)
.|++++|++..++.+...+..+...|. ||+||+|+|||++|+.+++.+........ ...++.+... .+. ..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~-~i-- 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKK-SI-- 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCC-CC--
Confidence 478999999999999999988766666 89999999999999999998854221110 1122222210 111 11
Q ss_pred HHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccchhhhhhhc
Q 004878 367 LEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFE 440 (725)
Q Consensus 367 ~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~~~~~~~~ 440 (725)
-.+.++.+.+.+. .++..|++|||+|.+ ..+.+|.|++.+++. .+.+|.+|+..+ .
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-------------~~~a~naLLK~LEepp~~t~~il~~~~~~-----~ 135 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-------------TEQAQNAFLKTIEEPPKGVFIILLCENLE-----Q 135 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEeCChH-----h
Confidence 1223555555443 235679999999999 456789999999863 345555554443 6
Q ss_pred ccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhh
Q 004878 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 441 ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~ 495 (725)
+.+.+++||+.+.+.+|+.++....+..... .++++.++.++.++.+
T Consensus 136 ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 136 ILDTIKSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred CcHHHHhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC
Confidence 7799999999999999999998776654321 4567777777776654
No 153
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.30 E-value=9.4e-11 Score=124.29 Aligned_cols=163 Identities=22% Similarity=0.294 Sum_probs=99.6
Q ss_pred cCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCccc-------CC-------------
Q 004878 287 ELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-------LS------------- 346 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l-------~~------------- 346 (725)
-.|.+++|+++.++.+.-.+......|+||.|+||+|||+++++++..+..-...... .+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 84 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMI 84 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCccc
Confidence 3577899999999987765443445789999999999999999999987321000000 00
Q ss_pred ---CeEEEeehh---hhhccccccchHHHHHHH---HHH--HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHH
Q 004878 347 ---KRIMSLDMG---LLMAGAKERGELEARVTT---LIS--EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (725)
Q Consensus 347 ---~~l~~ld~~---~l~~g~~~~g~~~~~l~~---~~~--~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L 415 (725)
.++..+... +-+.|.- .++..+.. .++ .+....+.+|||||++.+ ..++++.|
T Consensus 85 ~~~~p~~~~p~~~t~~~l~G~~---d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-------------~~~~q~~L 148 (334)
T PRK13407 85 ERPTPVVDLPLGVTEDRVVGAL---DIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-------------EDHIVDLL 148 (334)
T ss_pred ccCCccccCCCCCCcceeecch---hhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-------------CHHHHHHH
Confidence 000000000 0000100 01111100 000 011233468999999999 45677888
Q ss_pred hhhhcCCC---------------eEEEEeccchhhhhhhcccHHHHcccc-eEEecCCCH-HHHHHHHHHH
Q 004878 416 KPSLGRGE---------------LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLGL 469 (725)
Q Consensus 416 ~~~l~~~~---------------v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~-ee~~~IL~~~ 469 (725)
...++.+. +++|+++|+.+ ..+.+++..||. .|.+++|.. +++.+|++..
T Consensus 149 le~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e----~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 149 LDVAQSGENVVEREGLSIRHPARFVLVGSGNPEE----GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred HHHHHcCCeEEEECCeEEecCCCEEEEecCCccc----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 88776543 57778777654 247899999994 788888865 8889998764
No 154
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3e-11 Score=134.05 Aligned_cols=119 Identities=23% Similarity=0.360 Sum_probs=95.1
Q ss_pred CCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHH--HHhhcCCCCCCCCCeeEE
Q 004878 586 DDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAV--KRSRVGLKDPNRPTAAML 663 (725)
Q Consensus 586 ~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v--~~~~~gl~~p~rp~~~iL 663 (725)
.+.+..-....+..++...+.+||.+-+. +...+.+.++.|.+.++|.++++++|-+.+ +....+++.| .+|
T Consensus 281 ~m~~~SaE~~ViRnYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGp-----ILc 354 (782)
T COG0466 281 TMSPMSAEATVIRNYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGP-----ILC 354 (782)
T ss_pred cCCCCCchHHHHHHHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCc-----EEE
Confidence 34445556678889999999999988765 467789999999999999999999998755 4444455555 799
Q ss_pred EEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccc
Q 004878 664 FCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 716 (725)
Q Consensus 664 l~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG 716 (725)
|+||||||||+|++.||+.+ ++.|+|+...-.-| .+.+-|.---|||
T Consensus 355 LVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGvrD---EAEIRGHRRTYIG 401 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGVRD---EAEIRGHRRTYIG 401 (782)
T ss_pred EECCCCCCchhHHHHHHHHh---CCCEEEEecCcccc---HHHhccccccccc
Confidence 99999999999999999999 88999999987754 3555555555555
No 155
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.1e-10 Score=123.40 Aligned_cols=209 Identities=22% Similarity=0.269 Sum_probs=144.7
Q ss_pred cccccHHHHHHHHHHHhc----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-------
Q 004878 291 PVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------- 359 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~------- 359 (725)
.+.+|+++++++...|.. ..+.|++++|+||||||++++.+++++.... .+..++++||.....
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-----~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-----ANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-----ccCceEEEeeeeCCCHHHHHHH
Confidence 478999999999887655 5667899999999999999999999986531 122267777744321
Q ss_pred ------cccccc-hHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc--CCCeEEEEe
Q 004878 360 ------GAKERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIAS 429 (725)
Q Consensus 360 ------g~~~~g-~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~a 429 (725)
.....| ...+.++.+.+.+.. ....|+++||+|.|+... ...+.++++ ... ..++.+|+.
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~---------~~~LY~L~r-~~~~~~~~v~vi~i 162 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD---------GEVLYSLLR-APGENKVKVSIIAV 162 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc---------chHHHHHHh-hccccceeEEEEEE
Confidence 111112 223334444444443 467899999999996431 122333332 222 345678888
Q ss_pred ccchhhhhhhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHH
Q 004878 430 TTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai 507 (725)
+|...+.. .+++.+.++|. .|.|++++.+|...||....+.. ...-.+++++++.++..+....++ ..+++
T Consensus 163 ~n~~~~~~--~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~GD---AR~ai 235 (366)
T COG1474 163 SNDDKFLD--YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESGD---ARKAI 235 (366)
T ss_pred eccHHHHH--HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCcc---HHHHH
Confidence 88877643 67899999883 68899999999999998877643 345578999999998887765432 23789
Q ss_pred HHHHHHHHHHHHhh
Q 004878 508 DLVDEAGSRAHIEL 521 (725)
Q Consensus 508 ~ll~~a~~~~~~~~ 521 (725)
+++..|+..+....
T Consensus 236 dilr~A~eiAe~~~ 249 (366)
T COG1474 236 DILRRAGEIAEREG 249 (366)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999988776543
No 156
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.29 E-value=1.8e-10 Score=134.43 Aligned_cols=44 Identities=36% Similarity=0.613 Sum_probs=40.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ 710 (725)
++||-|.||+|||.|..|||+.. +..+||||+||..+ ...|+|+
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQTd---L~DLfGs 1588 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQTD---LCDLFGS 1588 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHh---cCceEEeeccccch---HHHHhCC
Confidence 57999999999999999999998 77899999999865 6789998
No 157
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.28 E-value=6.4e-12 Score=134.15 Aligned_cols=83 Identities=37% Similarity=0.663 Sum_probs=69.9
Q ss_pred HhHHHHhcCceeCcHHHHHHHHHHHHH--hhcCCCCCCC----CCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 621 VGLEEQLKKRVIGQDEAVAAISRAVKR--SRVGLKDPNR----PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~v~~--~~~gl~~p~r----p~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.++.+.|.+.|+||++|+..++.++.. .+.++..+.+ | .++||+||||||||++|++||+.+ +.+|+++|
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~-~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD 82 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CChheeec
Confidence 456788999999999999999988843 4555443322 4 599999999999999999999998 78999999
Q ss_pred ccCCcchhhHhHhhcCCCcccccc
Q 004878 695 MSEYMERHTVSKLIGSPPGYVGVG 718 (725)
Q Consensus 695 ~sE~~~k~~vs~liG~ppgyvG~~ 718 (725)
+++|.+ +||||.+
T Consensus 83 ~t~f~e-----------~GyvG~d 95 (443)
T PRK05201 83 ATKFTE-----------VGYVGRD 95 (443)
T ss_pred chhhcc-----------CCcccCC
Confidence 999987 5899976
No 158
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=2e-10 Score=121.94 Aligned_cols=165 Identities=23% Similarity=0.288 Sum_probs=103.9
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCC----ccc--CCCeEE-----------
Q 004878 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP----VFL--LSKRIM----------- 350 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p----~~l--~~~~l~----------- 350 (725)
.|..+||+++.+..|...+..+...++||.|++|||||++++.+++.+...++. +.. .+..++
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~ 94 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNG 94 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhccc
Confidence 467899999999999988888888899999999999999999999888643211 100 000000
Q ss_pred --------Eeehhhhhccc---cccc--hHHHHHHHHHH-----HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHH
Q 004878 351 --------SLDMGLLMAGA---KERG--ELEARVTTLIS-----EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS 412 (725)
Q Consensus 351 --------~ld~~~l~~g~---~~~g--~~~~~l~~~~~-----~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~ 412 (725)
.+.+..+-.+. ...| +.+..+..-.. .+.+..+.+|||||++.+ ....+
T Consensus 95 ~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-------------~~~~Q 161 (350)
T CHL00081 95 ETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-------------DDHLV 161 (350)
T ss_pred ccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-------------CHHHH
Confidence 00000000000 0001 01111111000 011234579999999999 44667
Q ss_pred HHHhhhhcCC---------------CeEEEEeccchhhhhhhcccHHHHcccc-eEEecCCC-HHHHHHHHHHH
Q 004878 413 NLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPS-QEDAVRILLGL 469 (725)
Q Consensus 413 ~~L~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps-~ee~~~IL~~~ 469 (725)
+.|...++.+ ++++|++.|+.+ ..+.++|..||. .|.+..|+ .+++.+|++..
T Consensus 162 ~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----g~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 162 DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc----CCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 7777776542 356677777654 257899999995 78999997 58899999764
No 159
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3e-12 Score=124.53 Aligned_cols=49 Identities=33% Similarity=0.624 Sum_probs=44.1
Q ss_pred HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 646 KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 646 ~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.+...|+.+|+ |+|+|||||||||+||||+|+.. ..+|||+.+|||..|
T Consensus 180 ly~qigidppr----gvllygppg~gktml~kava~~t---~a~firvvgsefvqk 228 (408)
T KOG0727|consen 180 LYKQIGIDPPR----GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK 228 (408)
T ss_pred HHHHhCCCCCc----ceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHHHH
Confidence 56677988885 99999999999999999999986 778999999999776
No 160
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.26 E-value=4e-11 Score=121.34 Aligned_cols=212 Identities=13% Similarity=0.137 Sum_probs=152.3
Q ss_pred hhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCe
Q 004878 269 RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (725)
Q Consensus 269 ~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~ 348 (725)
..+.-.++..+|.+++++..+++++++++.+..+..........|+|+|||||+|||+.+.+.|..+... .+. +..
T Consensus 20 ~~p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~-~~~---~~m 95 (360)
T KOG0990|consen 20 YIPQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSP-HPT---TSM 95 (360)
T ss_pred CCCCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCC-CCc---hhH
Confidence 3455567889999999999999999999999999998877778899999999999999999999988442 110 111
Q ss_pred EEEeehhhhhccccccchHHHHHHHHHHHHHh-------cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC
Q 004878 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQK-------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (725)
Q Consensus 349 l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~-------~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~ 421 (725)
+.+++.++ ...++-...+++ .|...+. ....++++||+|.+ ..+++|.|+..+++
T Consensus 96 ~lelnaSd----~rgid~vr~qi~-~fast~~~~~fst~~~fKlvILDEADaM-------------T~~AQnALRRviek 157 (360)
T KOG0990|consen 96 LLELNASD----DRGIDPVRQQIH-LFASTQQPTTYSTHAAFKLVILDEADAM-------------TRDAQNALRRVIEK 157 (360)
T ss_pred HHHhhccC----ccCCcchHHHHH-HHHhhccceeccccCceeEEEecchhHh-------------hHHHHHHHHHHHHH
Confidence 22222221 122222222222 2222221 25678999999999 67899999987774
Q ss_pred --CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhccc
Q 004878 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (725)
Q Consensus 422 --~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~ 499 (725)
.++.++..+|+.. ...|++++||+.+.+.+.+..+....+..+++ ...+..+++....++.++.+.+.
T Consensus 158 ~t~n~rF~ii~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e----~e~~~~~~~~~~a~~r~s~gDmr- 227 (360)
T KOG0990|consen 158 YTANTRFATISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRE----SEQKETNPEGYSALGRLSVGDMR- 227 (360)
T ss_pred hccceEEEEeccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHh----cchhhcCHHHHHHHHHHhHHHHH-
Confidence 4566666667765 67899999999999999998888888877776 44567888888887777766542
Q ss_pred CCCchhHHHHHHHHHHHH
Q 004878 500 RYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 500 r~lp~~ai~ll~~a~~~~ 517 (725)
++.+.|+......
T Consensus 228 -----~a~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 228 -----VALNYLQSILKKV 240 (360)
T ss_pred -----HHHHHHHHHHHHh
Confidence 5666666555443
No 161
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.26 E-value=2.9e-10 Score=120.84 Aligned_cols=163 Identities=21% Similarity=0.282 Sum_probs=100.1
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhc----CCCcc--------c-CCCeEE-----
Q 004878 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EVPVF--------L-LSKRIM----- 350 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~----~~p~~--------l-~~~~l~----- 350 (725)
|..++|+++.++.+.-.+-.+...+++|.|++|+||||++++++..+... ..|.. . .+++..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 66899999999988776666677899999999999999999999887321 01110 0 000100
Q ss_pred ----------Eeehhhhhccccccch--HHHHHHH---HHH--HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHH
Q 004878 351 ----------SLDMGLLMAGAKERGE--LEARVTT---LIS--EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (725)
Q Consensus 351 ----------~ld~~~l~~g~~~~g~--~~~~l~~---~~~--~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (725)
..|+..-.......|. ++..++. .++ .+.+..+.+|||||++.+ ...+++
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L-------------~~~~Q~ 149 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL-------------EDHLVD 149 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC-------------CHHHHH
Confidence 0111100000001111 1111100 000 011234569999999998 446777
Q ss_pred HHhhhhcCCC---------------eEEEEeccchhhhhhhcccHHHHcccc-eEEecCCCH-HHHHHHHHH
Q 004878 414 LLKPSLGRGE---------------LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLG 468 (725)
Q Consensus 414 ~L~~~l~~~~---------------v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~-ee~~~IL~~ 468 (725)
.|...++.+. +++|++.|+.+ ..+.++|..||. .+.++.|+. +++.+|++.
T Consensus 150 ~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e----g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 150 VLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred HHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc----CCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 7877776542 56777777653 257899999995 688888865 888888876
No 162
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.7e-11 Score=121.22 Aligned_cols=152 Identities=22% Similarity=0.305 Sum_probs=104.5
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh---c--CCeEEEE
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK---S--GDVILFI 388 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~---~--~~~IL~I 388 (725)
+||+||||||||+|+++||+.+.-. .........++++++..+.+ ++-++.-+.+..+|+.++. . .-+.++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLFS--KWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLFS--KWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHHH--HHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 6899999999999999999998421 12223356788999888873 4444444445555554432 2 2345679
Q ss_pred ccchhhhhCCCC-CCCCC-CCcHHHHHHHhhhhc----CCCeEEEEeccchhhhhhhcccHHHHcccc-eEEecCCCHHH
Q 004878 389 DEVHTLIGSGTV-GRGNK-GTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQED 461 (725)
Q Consensus 389 DEid~l~~~~~~-~~~~~-~~~~~~~~~L~~~l~----~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee 461 (725)
||++.|..++.+ .+++. .....+.|.|+..+. ..++.+++|+|..+ .+|.+|..|-+ +..+.+|+.+.
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHHH
Confidence 999999754421 11111 123446666665554 36678888888776 78999999995 78899999999
Q ss_pred HHHHHHHHHHHH
Q 004878 462 AVRILLGLREKY 473 (725)
Q Consensus 462 ~~~IL~~~~~~~ 473 (725)
+.+|++.....+
T Consensus 332 i~~IlkscieEL 343 (423)
T KOG0744|consen 332 IYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 163
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.25 E-value=2.6e-10 Score=113.31 Aligned_cols=165 Identities=22% Similarity=0.293 Sum_probs=117.2
Q ss_pred cCCCcccccHHHHHHHHHHH----hcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc
Q 004878 287 ELIDPVIGRETEIQRIIQIL----CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L----~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~ 362 (725)
-.+++++|.+.+.+.|++-. .-...+|+||+|+.|||||++++++..+... .+.++++++-..+..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~-------~GLRlIev~k~~L~~--- 93 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD-------QGLRLIEVSKEDLGD--- 93 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-------cCceEEEECHHHhcc---
Confidence 45678999998888877744 3367799999999999999999999998865 378899887555431
Q ss_pred ccchHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC------CCeEEEEeccchhh
Q 004878 363 ERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------GELQCIASTTQDEH 435 (725)
Q Consensus 363 ~~g~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------~~v~vI~at~~~~~ 435 (725)
+..+++.++. ..+.|||+||+. ++. ...-...|+.+|+. .++++.+|+|.-..
T Consensus 94 --------l~~l~~~l~~~~~kFIlf~DDLs--Fe~----------~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 94 --------LPELLDLLRDRPYKFILFCDDLS--FEE----------GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred --------HHHHHHHHhcCCCCEEEEecCCC--CCC----------CcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 4556666553 357899999874 322 22345677777763 45777788775421
Q ss_pred -----hhhh-----ccc--------HHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHH
Q 004878 436 -----RTQF-----EKD--------KALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA 485 (725)
Q Consensus 436 -----~~~~-----~ld--------~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~ 485 (725)
.... +++ -+|..|| -.|.|.+|+.++-.+|++.++.++ ++.++++.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~----g~~~~~e~ 218 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY----GLELDEEE 218 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHH
Confidence 1100 111 2566799 589999999999999999988754 77777533
No 164
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.25 E-value=9.2e-11 Score=129.74 Aligned_cols=182 Identities=18% Similarity=0.206 Sum_probs=130.4
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhc----------------------------------CCCCCceEEcCCCChH
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCR----------------------------------RTKNNPILLGESGVGK 324 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~----------------------------------~~~~~iLL~Gp~G~GK 324 (725)
=|++++++..|.+++|-+..-+.+..||.. +.+.-+||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 688889999999999988877777777643 2223468999999999
Q ss_pred HHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCC
Q 004878 325 TAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTV 400 (725)
Q Consensus 325 T~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~ 400 (725)
||||+.+|+.. |+.+++++.++--. ...+.+++..++..-. ...|.+|+|||||--
T Consensus 340 TTLAHViAkqa----------GYsVvEINASDeRt----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------ 399 (877)
T KOG1969|consen 340 TTLAHVIAKQA----------GYSVVEINASDERT----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------ 399 (877)
T ss_pred hHHHHHHHHhc----------CceEEEeccccccc----HHHHHHHHHHHHhhccccccCCCcceEEEecccCC------
Confidence 99999999998 99999998765432 2234455555443221 246899999999743
Q ss_pred CCCCCCCcHHHHHHHhhhhcC--------------------C---CeEEEEeccchhhhhhhcccHHHHc--cc-ceEEe
Q 004878 401 GRGNKGTGLDISNLLKPSLGR--------------------G---ELQCIASTTQDEHRTQFEKDKALAR--RF-QPVLI 454 (725)
Q Consensus 401 ~~~~~~~~~~~~~~L~~~l~~--------------------~---~v~vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i 454 (725)
...+.++++.++.. + .-.||+.||.. .-|+|+. -| ..|.|
T Consensus 400 -------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-------YaPaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 400 -------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-------YAPALRPLRPFAEIIAF 465 (877)
T ss_pred -------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-------cchhhhhcccceEEEEe
Confidence 23445555554431 0 02577777763 2466655 23 58899
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcc
Q 004878 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (725)
Q Consensus 455 ~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~ 498 (725)
.+|+..-..+-|+.++. ..++..+..++..++++++.-+.
T Consensus 466 ~~p~~s~Lv~RL~~IC~----rE~mr~d~~aL~~L~el~~~DIR 505 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICH----RENMRADSKALNALCELTQNDIR 505 (877)
T ss_pred cCCChhHHHHHHHHHHh----hhcCCCCHHHHHHHHHHhcchHH
Confidence 99999988888888887 44888999999999999886653
No 165
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.25 E-value=1.5e-10 Score=114.01 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=106.2
Q ss_pred HHHHHHhcCCC-CCceEEcCCCChHHHHHHHHHHHHHhcC----CCccc----------CCCeEEEeehhhhhccccccc
Q 004878 301 RIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAE----VPVFL----------LSKRIMSLDMGLLMAGAKERG 365 (725)
Q Consensus 301 ~l~~~L~~~~~-~~iLL~Gp~G~GKT~la~~la~~l~~~~----~p~~l----------~~~~l~~ld~~~l~~g~~~~g 365 (725)
.+.+.+..... ..+||+||+|+|||++++.+++.+.... .|-.. ....+..++... ...
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~- 76 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSI- 76 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcC-
Confidence 34555555544 4589999999999999999999985421 00000 000112221110 000
Q ss_pred hHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccchhhhhhh
Q 004878 366 ELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQF 439 (725)
Q Consensus 366 ~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~~~~~~~ 439 (725)
-.+.++.+++.+.. .+..|++|||+|.+ ..+.++.|+.+++.. ...+|.+++...
T Consensus 77 -~~~~i~~i~~~~~~~~~~~~~kviiide~~~l-------------~~~~~~~Ll~~le~~~~~~~~il~~~~~~----- 137 (188)
T TIGR00678 77 -KVDQVRELVEFLSRTPQESGRRVVIIEDAERM-------------NEAAANALLKTLEEPPPNTLFILITPSPE----- 137 (188)
T ss_pred -CHHHHHHHHHHHccCcccCCeEEEEEechhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChH-----
Confidence 12345555665543 34679999999999 335677888888763 356666666443
Q ss_pred cccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 440 ~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
.+.+++++|++.+.+.+|+.++...+|... + ++++++..++..+.+.
T Consensus 138 ~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 138 KLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGS 184 (188)
T ss_pred hChHHHHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCC
Confidence 678999999999999999999988877543 2 6788898888887754
No 166
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.24 E-value=2.4e-10 Score=119.11 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=67.9
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-eEEEEeccch-------hhhhhhcccHHHHcccceEEe
Q 004878 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-LQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (725)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-v~vI~at~~~-------~~~~~~~ld~~L~~Rf~~I~i 454 (725)
|.||||||+|.| ..+.+..|...++..- -++|.+||.. +|.....+...|.+|+-.|..
T Consensus 279 pGVLFIDEvHmL-------------DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t 345 (398)
T PF06068_consen 279 PGVLFIDEVHML-------------DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRT 345 (398)
T ss_dssp E-EEEEESGGGS-------------BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE
T ss_pred cceEEecchhhc-------------cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEEC
Confidence 679999999999 6788999999998643 4566666643 233344677899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhh
Q 004878 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 455 ~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~ 495 (725)
.+++.+|..+|++-.++ ..++.+++++++.+.+++..
T Consensus 346 ~py~~~ei~~Il~iR~~----~E~v~i~~~al~~L~~ig~~ 382 (398)
T PF06068_consen 346 KPYSEEEIKQILKIRAK----EEDVEISEDALDLLTKIGVE 382 (398)
T ss_dssp ----HHHHHHHHHHHHH----HCT--B-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhhh----hhcCcCCHHHHHHHHHHhhh
Confidence 99999999999988877 56899999999999887654
No 167
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=7.6e-11 Score=123.12 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHH-------
Q 004878 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE------- 368 (725)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~------- 368 (725)
.+..+.+...+.. ..+++|.|+||||||++++.+|..+ +.+++.+++..........|...
T Consensus 51 ~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l~~g~ 118 (327)
T TIGR01650 51 KATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVLKDGK 118 (327)
T ss_pred HHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeeccCCc
Confidence 3455556665543 5689999999999999999999999 56666666544432211111100
Q ss_pred ---HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC----------------CCeEEEEe
Q 004878 369 ---ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----------------GELQCIAS 429 (725)
Q Consensus 369 ---~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~----------------~~v~vI~a 429 (725)
......+..+.. .+.+|++||++.. ..++++.|..+|+. ..+++|+|
T Consensus 119 ~~~~f~~GpL~~A~~-~g~illlDEin~a-------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT 184 (327)
T TIGR01650 119 QITEFRDGILPWALQ-HNVALCFDEYDAG-------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFAT 184 (327)
T ss_pred ceeEEecCcchhHHh-CCeEEEechhhcc-------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEe
Confidence 001112222222 3678999999988 33555665555541 24689999
Q ss_pred ccchh-------hhhhhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhh
Q 004878 430 TTQDE-------HRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 430 t~~~~-------~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~ 494 (725)
.|+.+ |.....++.++.+||. .+.++.|+.++-.+|+......+ .-..++..++++++++.
T Consensus 185 ~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~----~~~~~~~i~~~mV~la~ 253 (327)
T TIGR01650 185 ANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGF----DDTEGKDIINAMVRVAD 253 (327)
T ss_pred eCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCC----CccchHHHHHHHHHHHH
Confidence 99876 7788889999999996 56899999999999986653211 11123456666666543
No 168
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.4e-10 Score=116.87 Aligned_cols=174 Identities=22% Similarity=0.290 Sum_probs=114.7
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccch-HHHHHHHHHHHHH----hcCCe
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE-LEARVTTLISEIQ----KSGDV 384 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~-~~~~l~~~~~~~~----~~~~~ 384 (725)
.+.|+||+||+|+|||.||+.||+.+ +.++...|+..+.. ..|.|+ .+..+.++++.+. +....
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTE-AGYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTE-AGYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhh-ccccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 35799999999999999999999999 44455556655553 345554 5666667766553 34567
Q ss_pred EEEEccchhhhhCCCCCCCCC-CCcHHHHHHHhhhhcC-----------------------CCeEEEEeccch-------
Q 004878 385 ILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSLGR-----------------------GELQCIASTTQD------- 433 (725)
Q Consensus 385 IL~IDEid~l~~~~~~~~~~~-~~~~~~~~~L~~~l~~-----------------------~~v~vI~at~~~------- 433 (725)
|+||||||.+.......+-.+ -++..++..|+.+++. .++.+|+.....
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 999999999986543322211 2445688888888862 123333321110
Q ss_pred ------------------------hh--------hhhhcccHHHHcccc-eEEecCCCHHHHHHHHHH----HHHHHHhc
Q 004878 434 ------------------------EH--------RTQFEKDKALARRFQ-PVLISEPSQEDAVRILLG----LREKYEAH 476 (725)
Q Consensus 434 ------------------------~~--------~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~----~~~~~~~~ 476 (725)
++ .-.+.+-|.|..|+- ...+...+.+++.+||.. +.++|+..
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 00 112245577888884 567888899999999975 55666432
Q ss_pred -----cCCCCCHHHHHHHHHHhh
Q 004878 477 -----HNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 477 -----~~~~i~~~~l~~l~~~s~ 494 (725)
-.+.++++++..+++.+-
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A~ 347 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKAI 347 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHHH
Confidence 234689999999888654
No 169
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.4e-12 Score=130.89 Aligned_cols=90 Identities=24% Similarity=0.369 Sum_probs=69.4
Q ss_pred hccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCce
Q 004878 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM 690 (725)
Q Consensus 611 ~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~l 690 (725)
.++|+|++++..+++.|.+.|+=+ +..+-.+++.++-.|. .|+|||||||||||++|||+|++. +.+|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilP------lr~pelF~~g~Ll~p~---kGiLL~GPpG~GKTmlAKA~Akea---ga~f 155 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILP------LRRPELFAKGKLLRPP---KGILLYGPPGTGKTMLAKAIAKEA---GANF 155 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhc------ccchhhhcccccccCC---ccceecCCCCchHHHHHHHHHHHc---CCCc
Confidence 577889899988888887655322 3333333344444433 499999999999999999999997 8899
Q ss_pred EEecccCCcchhhHhHhhcCCCcccccccccccC
Q 004878 691 LRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSRM 724 (725)
Q Consensus 691 Irid~sE~~~k~~vs~liG~ppgyvG~~e~~~~~ 724 (725)
|.|.||++++| +-|.+|+.|+-
T Consensus 156 Inv~~s~lt~K------------WfgE~eKlv~A 177 (386)
T KOG0737|consen 156 INVSVSNLTSK------------WFGEAQKLVKA 177 (386)
T ss_pred ceeeccccchh------------hHHHHHHHHHH
Confidence 99999999998 66888888763
No 170
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.2e-10 Score=126.48 Aligned_cols=115 Identities=21% Similarity=0.352 Sum_probs=92.7
Q ss_pred CHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcH
Q 004878 593 GPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672 (725)
Q Consensus 593 ~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGK 672 (725)
..+....++...|.+||++.+.+ .-.+...++.|.+.++|+++++++|.+.+.-.+.- ..-+. -.+||+||||+||
T Consensus 376 EfnvtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr--gs~qG-kIlCf~GPPGVGK 451 (906)
T KOG2004|consen 376 EFNVTRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR--GSVQG-KILCFVGPPGVGK 451 (906)
T ss_pred chhHHHHHHHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc--ccCCC-cEEEEeCCCCCCc
Confidence 34456678888899999998866 67788999999999999999999999877655431 11111 1799999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccc
Q 004878 673 TELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV 717 (725)
Q Consensus 673 T~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~ 717 (725)
|++||.||+.| ++.|.|+...-+. +|+.+-|----|||.
T Consensus 452 TSI~kSIA~AL---nRkFfRfSvGG~t---DvAeIkGHRRTYVGA 490 (906)
T KOG2004|consen 452 TSIAKSIARAL---NRKFFRFSVGGMT---DVAEIKGHRRTYVGA 490 (906)
T ss_pred ccHHHHHHHHh---CCceEEEeccccc---cHHhhcccceeeecc
Confidence 99999999999 8899999998775 477777777777774
No 171
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3.8e-10 Score=119.39 Aligned_cols=164 Identities=15% Similarity=0.159 Sum_probs=112.5
Q ss_pred CCCcccccHHHHHHHHHHHhcCC-CCCceEEcCCCChHHHHHHHHHHHHHhcCCCc--------ccCCCeEEEeehhhhh
Q 004878 288 LIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPV--------FLLSKRIMSLDMGLLM 358 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~~~-~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~--------~l~~~~l~~ld~~~l~ 358 (725)
.|++++|++..++.+...+...+ ....||+||+|+||+++|.++|+.+....... ......++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 47899999999999999998865 46779999999999999999999986432100 0011122222211001
Q ss_pred cccc--------------ccch-HHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 359 AGAK--------------ERGE-LEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 359 ~g~~--------------~~g~-~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
.|.. .... -.+.++.+.+.+.. ++..|++||++|.+ ....+|.|++.+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-------------~~~aaNaLLK~L 148 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------NEAAANALLKTL 148 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------CHHHHHHHHHHH
Confidence 1100 0001 11235566555542 45679999999999 456788999888
Q ss_pred cCC-CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHH
Q 004878 420 GRG-ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL 469 (725)
Q Consensus 420 ~~~-~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~ 469 (725)
+.. +.++|..++..+ .+-|.+++||+.+.|.+|+.++..++|...
T Consensus 149 EEPp~~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 149 EEPGNGTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred hCCCCCeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHh
Confidence 843 445666666555 778999999999999999999998888764
No 172
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.20 E-value=9.5e-10 Score=128.64 Aligned_cols=160 Identities=16% Similarity=0.283 Sum_probs=107.6
Q ss_pred HHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-----ccc----cccchHHH
Q 004878 299 IQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----AGA----KERGELEA 369 (725)
Q Consensus 299 i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~-----~g~----~~~g~~~~ 369 (725)
+++++.++.. ..++||-|.||+|||+|+.++|+.. |..++.+++++.. .|. ...|+|..
T Consensus 1533 l~rVlRAmqv--~kpilLEGsPGVGKTSlItaLAr~t----------G~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w 1600 (4600)
T COG5271 1533 LRRVLRAMQV--GKPILLEGSPGVGKTSLITALARKT----------GKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRW 1600 (4600)
T ss_pred HHHHHHHHhc--CCceeecCCCCccHHHHHHHHHHHh----------cCceEEeeccccchHHHHhCCCCCcccCceeEe
Confidence 3455555544 5679999999999999999999988 7788888875532 111 22356655
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----------------CCCeEEEEeccch
Q 004878 370 RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----------------RGELQCIASTTQD 433 (725)
Q Consensus 370 ~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----------------~~~v~vI~at~~~ 433 (725)
.-..++..++. +.++++||+... .+.+..-|...+. ...++|.++-|+.
T Consensus 1601 ~dapfL~amr~--G~WVlLDEiNLa-------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq 1665 (4600)
T COG5271 1601 MDAPFLHAMRD--GGWVLLDEINLA-------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQ 1665 (4600)
T ss_pred cccHHHHHhhc--CCEEEeehhhhh-------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCch
Confidence 54555555554 458889999866 3344444443332 2456788887776
Q ss_pred hhh-hhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 004878 434 EHR-TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 434 ~~~-~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s 493 (725)
.-. ....+...+..||.+|.++..+.++...|...+.. .+.++.+-.++++.
T Consensus 1666 ~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~yp--------~v~~d~~~kiik~m 1718 (4600)
T COG5271 1666 DQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIANKMYP--------QVNEDWRLKIIKFM 1718 (4600)
T ss_pred hcCCCcccCCHHHhhhhheEEecccccchHHHHHHhhCC--------ccChHHHHHHHHHH
Confidence 422 23467889999999999999999999888866554 34555554554443
No 173
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.9e-10 Score=119.84 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=92.2
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEE
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFI 388 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~I 388 (725)
.-+++-|||||||||||+++.|+|.++ +..|+-+++...... .+ ++.++-. ..+.+||+|
T Consensus 233 awKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIydLeLt~v~~n------~d--Lr~LL~~--t~~kSIivI 292 (457)
T KOG0743|consen 233 AWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYDLELTEVKLD------SD--LRHLLLA--TPNKSILLI 292 (457)
T ss_pred chhccceeeCCCCCCHHHHHHHHHhhc----------CCceEEeeeccccCc------HH--HHHHHHh--CCCCcEEEE
Confidence 345789999999999999999999999 888998887665421 11 5666543 345689999
Q ss_pred ccchhhhhCCCCCCCCCCCcH-----HHHHHHhhhhc----C--CCeEEEEeccchhhhhhhcccHHHHc--ccc-eEEe
Q 004878 389 DEVHTLIGSGTVGRGNKGTGL-----DISNLLKPSLG----R--GELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLI 454 (725)
Q Consensus 389 DEid~l~~~~~~~~~~~~~~~-----~~~~~L~~~l~----~--~~v~vI~at~~~~~~~~~~ld~~L~~--Rf~-~I~i 454 (725)
+|||.-+........+..... -...-|+..+. . ++-++|.|||..+ .+||+|.| |++ .|++
T Consensus 293 EDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 293 EDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE-----KLDPALLRPGRMDMHIYM 367 (457)
T ss_pred eecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh-----hcCHhhcCCCcceeEEEc
Confidence 999988753222111100000 11222333332 2 4678999999998 89999999 884 7999
Q ss_pred cCCCHHHHHHHHHH
Q 004878 455 SEPSQEDAVRILLG 468 (725)
Q Consensus 455 ~~Ps~ee~~~IL~~ 468 (725)
...+.++-..+...
T Consensus 368 gyCtf~~fK~La~n 381 (457)
T KOG0743|consen 368 GYCTFEAFKTLASN 381 (457)
T ss_pred CCCCHHHHHHHHHH
Confidence 99898875554433
No 174
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.20 E-value=1e-09 Score=112.41 Aligned_cols=95 Identities=19% Similarity=0.222 Sum_probs=76.1
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-eEEEEeccch-------hhhhhhcccHHHHcccceEEe
Q 004878 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-LQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (725)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-v~vI~at~~~-------~~~~~~~ld~~L~~Rf~~I~i 454 (725)
|.||||||+|.| ..+.+..|...++..- -++|.+||.. ++..-..+...|..|+-.|..
T Consensus 292 pGVLFIDEvHmL-------------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t 358 (450)
T COG1224 292 PGVLFIDEVHML-------------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIIST 358 (450)
T ss_pred cceEEEechhhh-------------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEec
Confidence 779999999999 6688889999888643 3556666643 223334677899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhh
Q 004878 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 455 ~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~ 494 (725)
.+++.++..+|++..+. ..++.++++++++++.+..
T Consensus 359 ~py~~~EireIi~iRa~----ee~i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 359 RPYSREEIREIIRIRAK----EEDIELSDDALEYLTDIGE 394 (450)
T ss_pred CCCCHHHHHHHHHHhhh----hhccccCHHHHHHHHhhch
Confidence 99999999999988776 4578999999999988754
No 175
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.1e-11 Score=125.84 Aligned_cols=103 Identities=25% Similarity=0.303 Sum_probs=73.4
Q ss_pred HHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHH
Q 004878 596 DIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675 (725)
Q Consensus 596 di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~l 675 (725)
++.+.+++-.--.-.++.|+|+-++.+.++.|++.|+ .++..... ++.-+||..|+|++||||||||+|
T Consensus 193 ~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVv----------lPi~mPe~-F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 193 DLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVV----------LPIWMPEF-FKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred HHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHh----------hhhhhHHH-HhhcccccceeeeeCCCCCcHHHH
Confidence 6666665432112226889987777777776664432 22222211 122345667999999999999999
Q ss_pred HHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccccccC
Q 004878 676 AKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSRM 724 (725)
Q Consensus 676 AkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~~ 724 (725)
|||+|.++ +--|..|.-|.+..| |-|.+|+.||+
T Consensus 262 AKAvATEc---~tTFFNVSsstltSK------------wRGeSEKlvRl 295 (491)
T KOG0738|consen 262 AKAVATEC---GTTFFNVSSSTLTSK------------WRGESEKLVRL 295 (491)
T ss_pred HHHHHHhh---cCeEEEechhhhhhh------------hccchHHHHHH
Confidence 99999998 557899999988888 99999999996
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1.5e-10 Score=123.87 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=108.5
Q ss_pred CCcccc-cHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCc-ccC-------------CCeEEEe
Q 004878 289 IDPVIG-RETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV-FLL-------------SKRIMSL 352 (725)
Q Consensus 289 l~~liG-~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~-~l~-------------~~~l~~l 352 (725)
++.++| ++..++.+...+...+..|. ||+||+|+||+++|+.+++.+...+... ... ...+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 567888 88899999999988777776 8999999999999999999986432100 000 0112222
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEE
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQC 426 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~v 426 (725)
... +... ..+.++.+.+.+. .++..|++|||+|.+ ..+.+|.|++.+++ +.+.+
T Consensus 84 ~~~----~~~i---~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-------------~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 84 APD----GQSI---KKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-------------TASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred ccc----cccC---CHHHHHHHHHHHhhCCcccCceEEEeehHhhh-------------CHHHHHHHHHHhcCCCCCceE
Confidence 111 1100 1234555555543 234569999999999 45688999999996 56777
Q ss_pred EEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHH
Q 004878 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~ 467 (725)
|.+|+... .+.+++++|++.+.+.+|+.++...+|.
T Consensus 144 Il~t~~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 144 ILLTENKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEEeCChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 77776554 6779999999999999999999766663
No 177
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.18 E-value=1.4e-09 Score=118.74 Aligned_cols=194 Identities=18% Similarity=0.220 Sum_probs=108.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc------cc
Q 004878 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA------KE 363 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~------~~ 363 (725)
..++|+++.++.+...+.. +.|+||+||||||||++|++++..+.... ++......+. ...+++ |. ..
T Consensus 20 ~~i~gre~vI~lll~aala--g~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ft--tp~DLf-G~l~i~~~~~ 93 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFS--TPEEVF-GPLSIQALKD 93 (498)
T ss_pred hhccCcHHHHHHHHHHHcc--CCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeec--CcHHhc-CcHHHhhhhh
Confidence 4689999999999887764 67899999999999999999999874322 2111111110 111211 11 01
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC------------eEEEEecc
Q 004878 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------LQCIASTT 431 (725)
Q Consensus 364 ~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------------v~vI~at~ 431 (725)
.|.+.......+. ...+||+|||+.+ ....++.|+..++.+. ..++++||
T Consensus 94 ~g~f~r~~~G~L~-----~A~lLfLDEI~ra-------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 94 EGRYQRLTSGYLP-----EAEIVFLDEIWKA-------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred cCchhhhcCCccc-----cccEEeecccccC-------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 1222111111010 1228999999877 5568888888885432 23445555
Q ss_pred chhhhhhhcccHHHHcccc-eEEecCCCH-HHHHHHHHHHHHH--HHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHH
Q 004878 432 QDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLGLREK--YEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (725)
Q Consensus 432 ~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~-ee~~~IL~~~~~~--~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai 507 (725)
+.+ ..-...+++..||. .|.+++|+. ++-.+||...... ........++.+.+..+-+... .-.+++...
T Consensus 156 ~LP--E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~----~V~v~d~v~ 229 (498)
T PRK13531 156 ELP--EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIG----KITLPDHVF 229 (498)
T ss_pred CCc--ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhc----ceeCCHHHH
Confidence 432 11123468999994 678888864 5557777653210 0001122356665555444332 334556555
Q ss_pred HHHHHH
Q 004878 508 DLVDEA 513 (725)
Q Consensus 508 ~ll~~a 513 (725)
+.+-..
T Consensus 230 eyI~~L 235 (498)
T PRK13531 230 ELIFQL 235 (498)
T ss_pred HHHHHH
Confidence 554433
No 178
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.17 E-value=4e-11 Score=128.08 Aligned_cols=88 Identities=36% Similarity=0.619 Sum_probs=70.7
Q ss_pred HhHHHHhcCceeCcHHHHHHHHHHHHH--hhcCCC----CCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 621 VGLEEQLKKRVIGQDEAVAAISRAVKR--SRVGLK----DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~v~~--~~~gl~----~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.++.+.|.+.|+||++|+..++.++.. .+.++. .+..| .++||+||||||||++|++||+.+ +.+|+.+|
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vd 79 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 79 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEee
Confidence 456788899999999999999988863 444443 22234 499999999999999999999998 78999999
Q ss_pred ccCCcchhhHhHhhcCCCccccc-cccccc
Q 004878 695 MSEYMERHTVSKLIGSPPGYVGV-GEYLSR 723 (725)
Q Consensus 695 ~sE~~~k~~vs~liG~ppgyvG~-~e~~~~ 723 (725)
+++|.+ +||||. .|..+|
T Consensus 80 at~~~e-----------~g~vG~dvE~i~r 98 (441)
T TIGR00390 80 ATKFTE-----------VGYVGRDVESMVR 98 (441)
T ss_pred cceeec-----------CCcccCCHHHHHH
Confidence 999986 589995 455444
No 179
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.17 E-value=4.9e-11 Score=129.39 Aligned_cols=85 Identities=32% Similarity=0.424 Sum_probs=67.2
Q ss_pred HhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCC----CC-----CCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceE
Q 004878 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKD----PN-----RPTAAMLFCGPTGVGKTELAKSLAACYFGSESSML 691 (725)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~----p~-----rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lI 691 (725)
.++++.|.+.|+||++|++.+..++.....++.. +. .+.+++||+||||||||++|++||+.+ +.+|+
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf~ 145 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPFA 145 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCeE
Confidence 5678899999999999999999888544333322 11 123589999999999999999999997 66888
Q ss_pred EecccCCcchhhHhHhhcCCCccccccc
Q 004878 692 RLDMSEYMERHTVSKLIGSPPGYVGVGE 719 (725)
Q Consensus 692 rid~sE~~~k~~vs~liG~ppgyvG~~e 719 (725)
.+|.+.+ .++||||+++
T Consensus 146 ~~da~~L-----------~~~gyvG~d~ 162 (413)
T TIGR00382 146 IADATTL-----------TEAGYVGEDV 162 (413)
T ss_pred Eechhhc-----------cccccccccH
Confidence 8887765 3589999974
No 180
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.17 E-value=4.5e-11 Score=130.49 Aligned_cols=86 Identities=38% Similarity=0.510 Sum_probs=68.0
Q ss_pred HhHHHHhcCceeCcHHHHHHHHHHH----HHhhcCCC---CCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEe
Q 004878 621 VGLEEQLKKRVIGQDEAVAAISRAV----KRSRVGLK---DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (725)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~v----~~~~~gl~---~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIri 693 (725)
.++++.|.+.|+||++|++.++.++ ++.+.+.. +...+.+++||+||||||||++|++||..+ +.+|+++
T Consensus 63 ~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~i 139 (412)
T PRK05342 63 KEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAIA 139 (412)
T ss_pred HHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCceec
Confidence 5677888889999999999998777 33333322 122244699999999999999999999998 7789999
Q ss_pred cccCCcchhhHhHhhcCCCcccccccc
Q 004878 694 DMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 694 d~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
|++++.+ +||||++..
T Consensus 140 d~~~l~~-----------~gyvG~d~e 155 (412)
T PRK05342 140 DATTLTE-----------AGYVGEDVE 155 (412)
T ss_pred chhhccc-----------CCcccchHH
Confidence 9999865 589998643
No 181
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.3e-10 Score=115.98 Aligned_cols=87 Identities=28% Similarity=0.466 Sum_probs=65.7
Q ss_pred hccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCce
Q 004878 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM 690 (725)
Q Consensus 611 ~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~l 690 (725)
++.|++.-+|...++-|.+.|| .+|++... +...++|..+|||||||||||+.||||+|.+- +.-|
T Consensus 129 NVkWsDVAGLE~AKeALKEAVI----------LPIKFPql-FtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTF 194 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVI----------LPIKFPQL-FTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTF 194 (439)
T ss_pred CCchhhhccchhHHHHHHhhee----------ecccchhh-hcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCce
Confidence 6677775555555555554443 23344433 23345678899999999999999999999997 5679
Q ss_pred EEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 691 LRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 691 Irid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
.+|.-|+++.| |.|.+|++|+
T Consensus 195 FSvSSSDLvSK------------WmGESEkLVk 215 (439)
T KOG0739|consen 195 FSVSSSDLVSK------------WMGESEKLVK 215 (439)
T ss_pred EEeehHHHHHH------------HhccHHHHHH
Confidence 99999999998 9999999885
No 182
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.14 E-value=2.8e-10 Score=121.71 Aligned_cols=179 Identities=17% Similarity=0.223 Sum_probs=115.7
Q ss_pred CCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccc
Q 004878 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g 365 (725)
.+++++|.+..++++.+.+.+ ....+|+|+|++||||+++|+++...... .+.+++.+||..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~~----- 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNEN----- 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCHH-----
Confidence 357899999999998887766 55678999999999999999999865422 2567888888765311
Q ss_pred hHHHHH------------HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-----------
Q 004878 366 ELEARV------------TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (725)
Q Consensus 366 ~~~~~l------------~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----------- 422 (725)
.++..+ ......+....+..|||||++.| ..+++..|..+++.+
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA-------------PMLVQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 111100 00001122344678999999999 456777777777643
Q ss_pred --CeEEEEeccchhh--hhhhcccHHHHcccceEEecCCCHHHHH----HHHHHHHHHHHhccC----CCCCHHHHHHHH
Q 004878 423 --ELQCIASTTQDEH--RTQFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHN----CKFTLEAINAAV 490 (725)
Q Consensus 423 --~v~vI~at~~~~~--~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~----~IL~~~~~~~~~~~~----~~i~~~~l~~l~ 490 (725)
++++|++++.+-. ...-...+.|..||..+.|..|+..+|. .++..++.++...++ ..+++++++.+.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 3788888876531 1122455778889976666666555544 444444444433322 357888887775
Q ss_pred H
Q 004878 491 H 491 (725)
Q Consensus 491 ~ 491 (725)
.
T Consensus 219 ~ 219 (326)
T PRK11608 219 N 219 (326)
T ss_pred h
Confidence 5
No 183
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.12 E-value=9e-10 Score=118.26 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=107.3
Q ss_pred cccccHHHHHHHHHHHh-cCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCccc--------------CCCeEEEeeh
Q 004878 291 PVIGRETEIQRIIQILC-RRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL--------------LSKRIMSLDM 354 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~-~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l--------------~~~~l~~ld~ 354 (725)
+++|.++.+.++..... .....+ +||+||||+|||++|.++|+.+......... ....+++++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 57788888888888777 455667 9999999999999999999999643211111 1235555554
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 428 (725)
+.... ..-..+.++.+.+.... ++..|++|||+|.+ ..+++|.++..++. ...++|.
T Consensus 82 s~~~~----~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-------------t~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 82 SDLRK----IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-------------TEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred cccCC----CcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-------------hHHHHHHHHHHhccCCCCeEEEE
Confidence 33221 11234556666555433 34679999999999 45789999999885 5678888
Q ss_pred eccchhhhhhhcccHHHHcccceEEecCCCHHHHHHH
Q 004878 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRI 465 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~I 465 (725)
+|+... .+-+.+++||+.+.|.+|+.......
T Consensus 145 ~~n~~~-----~il~tI~SRc~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 145 ITNDPS-----KILPTIRSRCQRIRFKPPSRLEAIAW 176 (325)
T ss_pred EcCChh-----hccchhhhcceeeecCCchHHHHHHH
Confidence 888654 66789999999999998665544443
No 184
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.12 E-value=3.2e-11 Score=118.15 Aligned_cols=75 Identities=35% Similarity=0.457 Sum_probs=58.0
Q ss_pred CceeCcHHHHHHHHHHHHHh----hcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhH
Q 004878 629 KRVIGQDEAVAAISRAVKRS----RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTV 704 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~----~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~v 704 (725)
..|+||++|+.+-.-.+++. +.|-..|+ ++|||||||||||++|||||++. +.+|+.++-.|+..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPk----nVLFyGppGTGKTm~Akalane~---kvp~l~vkat~liGe--- 190 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPK----NVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELIGE--- 190 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcc----eeEEECCCCccHHHHHHHHhccc---CCceEEechHHHHHH---
Confidence 34899999998766555553 23444553 99999999999999999999997 889999998866655
Q ss_pred hHhhcCCCcccccccccc
Q 004878 705 SKLIGSPPGYVGVGEYLS 722 (725)
Q Consensus 705 s~liG~ppgyvG~~e~~~ 722 (725)
|||-+-..+
T Consensus 191 ---------hVGdgar~I 199 (368)
T COG1223 191 ---------HVGDGARRI 199 (368)
T ss_pred ---------HhhhHHHHH
Confidence 788665433
No 185
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.12 E-value=4.4e-10 Score=128.70 Aligned_cols=188 Identities=21% Similarity=0.289 Sum_probs=121.6
Q ss_pred hhcCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-
Q 004878 285 SEELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA- 361 (725)
Q Consensus 285 ~~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~- 361 (725)
+...++.+||++..++++.+.+.+ ....+|+|+|++||||+++|+++...... .+.+++.+||..+....
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~~~~ 263 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSETLL 263 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCHHHH
Confidence 446788999999999999887765 56678999999999999999999987532 25678889987652100
Q ss_pred ------cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------
Q 004878 362 ------KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (725)
Q Consensus 362 ------~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------- 422 (725)
...|.+...............+.+||||||+.| ..+.+..|..+++.+
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 330 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI-------------SPAFQAKLLRVLQEGEFERVGGNRTLKV 330 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC-------------CHHHHHHHHHHHhcCcEEECCCCceEee
Confidence 000100000000000012234679999999999 556778888877654
Q ss_pred CeEEEEeccchhhh--hhhcccHHHHcccceEEecCCCH----HHHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHHH
Q 004878 423 ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHH--NCKFTLEAINAAVHL 492 (725)
Q Consensus 423 ~v~vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~----ee~~~IL~~~~~~~~~~~--~~~i~~~~l~~l~~~ 492 (725)
++++|++|+.+... ..-...+.|..|+..+.|..|+. ++...+++.++.++...+ .+.+++++++.+..+
T Consensus 331 ~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 331 DVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC 408 (534)
T ss_pred cEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 36889988765311 11234567777886555555543 555566666666553322 267899988887653
No 186
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.11 E-value=8.1e-10 Score=118.67 Aligned_cols=151 Identities=24% Similarity=0.298 Sum_probs=105.5
Q ss_pred cccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHH
Q 004878 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~ 370 (725)
.++|+++++..+...+.. +.+++|.||||||||++|+.+|+.+ +..++.+.|..-.......|.+...
T Consensus 25 ~~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 488989888887766665 6789999999999999999999998 5667777765544333333322211
Q ss_pred HH----HHHHHHHh--cCC--eEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--------------CCeEEEE
Q 004878 371 VT----TLISEIQK--SGD--VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------GELQCIA 428 (725)
Q Consensus 371 l~----~~~~~~~~--~~~--~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--------------~~v~vI~ 428 (725)
.. ..+..... -.. .|+++|||++. ..++++.|+..++. ..+.+|+
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccC-------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 11 00000000 011 39999999888 45788888888764 3457888
Q ss_pred eccchhhhhhhcccHHHHccc-ceEEecCC-CHHHHHHHH
Q 004878 429 STTQDEHRTQFEKDKALARRF-QPVLISEP-SQEDAVRIL 466 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~Rf-~~I~i~~P-s~ee~~~IL 466 (725)
|.|+.+|.....+..++.+|| -.+.++.| +.++...++
T Consensus 160 T~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred ccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHH
Confidence 889888888788899999999 78999999 444444444
No 187
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.11 E-value=8.4e-10 Score=120.12 Aligned_cols=184 Identities=19% Similarity=0.315 Sum_probs=126.3
Q ss_pred CCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc-----
Q 004878 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG----- 360 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g----- 360 (725)
...++||+...++++.+.+.+ ....+|||+|++||||..+|++|.+.-.+. +.+++.+||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~-------~~PFVavNcaAip~~l~ESE 211 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA-------KGPFIAVNCAAIPENLLESE 211 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc-------CCCceeeecccCCHHHHHHH
Confidence 456899999999999998877 667789999999999999999999877554 456677887665311
Q ss_pred --ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeE
Q 004878 361 --AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (725)
Q Consensus 361 --~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 425 (725)
....|.|......-........+..||||||..+ ..++|.-|+..++.+ +++
T Consensus 212 LFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-------------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 212 LFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM-------------PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred hhcccccCcCCcccccCcceeEcCCceEEeeccccC-------------CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 1223333333333222233445779999999988 678888888888754 368
Q ss_pred EEEeccchhhhh--hhcccHHHHcccceEEecCCCHHHH----HHHHHHHHHHHHhcc---CCCCCHHHHHHHHH
Q 004878 426 CIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHH---NCKFTLEAINAAVH 491 (725)
Q Consensus 426 vI~at~~~~~~~--~~~ld~~L~~Rf~~I~i~~Ps~ee~----~~IL~~~~~~~~~~~---~~~i~~~~l~~l~~ 491 (725)
||++|+.+-... .-..-..|-.|+.++.+..|...|| ..+++.++.++.... ...++++++..+..
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~ 353 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLA 353 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 999998763211 1124466777888888888865544 444555555554433 34688888877754
No 188
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.4e-09 Score=115.81 Aligned_cols=163 Identities=20% Similarity=0.203 Sum_probs=105.6
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------cCCCeEEEeehhhhhccccccchHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--------------LLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~--------------l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~ 376 (725)
...+||+||+|+|||++|+.+|+.+...+.... ....+++.+.... +.+. --.+.++.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~~--i~id~iR~l~~ 96 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADKT--IKVDQVRELVS 96 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCCC--CCHHHHHHHHH
Confidence 345789999999999999999999864221000 0011223322110 0000 11234556655
Q ss_pred HHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccc
Q 004878 377 EIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQ 450 (725)
Q Consensus 377 ~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~ 450 (725)
.+.. ++..|++||++|.+ ..+.+|.|++.++. +.+.+|.+|+..+ .+.|.+++||+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-------------~~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~SRc~ 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-------------NRNAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIKSRCQ 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-------------CHHHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHHhhce
Confidence 5542 45668899999999 55788999999997 4677887777766 68899999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHH
Q 004878 451 PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLV 510 (725)
Q Consensus 451 ~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll 510 (725)
.+.|.+|+.++....|..... ..+++....++.++.+. |.+++.++
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~Gs------p~~A~~l~ 204 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALP--------ESDERERIELLTLAGGS------PLRALQLH 204 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcCCC------HHHHHHHH
Confidence 999999999988777753211 23455555566665543 34555544
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.11 E-value=7.4e-10 Score=106.04 Aligned_cols=142 Identities=16% Similarity=0.139 Sum_probs=94.1
Q ss_pred ccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------cCCCeEEEeehhhhhc
Q 004878 294 GRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------LLSKRIMSLDMGLLMA 359 (725)
Q Consensus 294 G~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------l~~~~l~~ld~~~l~~ 359 (725)
|+++.++.|...+...+..+ +||+||+|+||+++|..+++.+........ .....++.++.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 78999999999999877777 699999999999999999999865332210 112334443322110
Q ss_pred cccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccch
Q 004878 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (725)
Q Consensus 360 g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~ 433 (725)
..-..+.++.+.+.+.. ++.-|++|||+|.| ..+++|.|+..||+. .+.+|.+|+..
T Consensus 80 ----~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-------------~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 80 ----KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-------------TEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp ----SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred ----chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-------------hHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 00112445566555432 35679999999999 568999999999974 67777777776
Q ss_pred hhhhhhcccHHHHcccceEEecCCC
Q 004878 434 EHRTQFEKDKALARRFQPVLISEPS 458 (725)
Q Consensus 434 ~~~~~~~ld~~L~~Rf~~I~i~~Ps 458 (725)
. .+.+.+++|++.+.|++.+
T Consensus 143 ~-----~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 S-----KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp G-----GS-HHHHTTSEEEEE----
T ss_pred H-----HChHHHHhhceEEecCCCC
Confidence 5 7889999999999998754
No 190
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.10 E-value=3.2e-10 Score=121.12 Aligned_cols=181 Identities=18% Similarity=0.252 Sum_probs=113.2
Q ss_pred ccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-------c
Q 004878 292 VIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-------K 362 (725)
Q Consensus 292 liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~-------~ 362 (725)
+||+...++++.+.+.+ ....+|||+|++||||+++|+++...... .+.+++.+||..+.... .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCChHHHHHHHhcc
Confidence 47888888888777665 55678999999999999999999876533 25678888887543110 0
Q ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------------eEEEEe
Q 004878 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIAS 429 (725)
Q Consensus 363 ~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~a 429 (725)
..|.+......-........+.+||||||+.| ..+++..|..+++.+. +++|++
T Consensus 74 ~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 74 EAGAFTGAQKRHQGRFERADGGTLFLDELATA-------------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred ccccccCcccccCCchhhCCCCEEEeCChHhC-------------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 00000000000000122334679999999999 5567778888776543 688998
Q ss_pred ccchhh--hhhhcccHHHHcccceEEecCCCHHHH----HHHHHHHHHHHHhccC----CCCCHHHHHHHHHH
Q 004878 430 TTQDEH--RTQFEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHHN----CKFTLEAINAAVHL 492 (725)
Q Consensus 430 t~~~~~--~~~~~ld~~L~~Rf~~I~i~~Ps~ee~----~~IL~~~~~~~~~~~~----~~i~~~~l~~l~~~ 492 (725)
|+.+-. ...-...+.|..||..+.|..|+..+| ..+++.++.++...++ ..+++++++.+..+
T Consensus 141 t~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 141 TNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred chhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 876531 111234577888886666666655544 4444444444433222 36899988877653
No 191
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.10 E-value=1e-09 Score=102.41 Aligned_cols=144 Identities=24% Similarity=0.337 Sum_probs=92.0
Q ss_pred cccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHH-H
Q 004878 293 IGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR-V 371 (725)
Q Consensus 293 iG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~-l 371 (725)
+|++..+..+...+......+++|+||+|+|||++++.+++.+.. .+..++.+++................ .
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 477888899998888777888999999999999999999998852 25677787776654322111100000 0
Q ss_pred HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEEeccchhhhhhhcccHHHHc
Q 004878 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALAR 447 (725)
Q Consensus 372 ~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~at~~~~~~~~~~ld~~L~~ 447 (725)
...........+.+|+|||++.+.. .....+...+..... ...+.+|++++.... ...++.+.+
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~ 141 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSR---------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYD 141 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhH---------HHHHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHh
Confidence 1111122234578999999998721 112233444444433 357888888887652 356788889
Q ss_pred cc-ceEEec
Q 004878 448 RF-QPVLIS 455 (725)
Q Consensus 448 Rf-~~I~i~ 455 (725)
|| ..+.++
T Consensus 142 r~~~~i~~~ 150 (151)
T cd00009 142 RLDIRIVIP 150 (151)
T ss_pred hhccEeecC
Confidence 98 455554
No 192
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7.4e-11 Score=133.70 Aligned_cols=75 Identities=37% Similarity=0.553 Sum_probs=62.2
Q ss_pred ceeCcHHHHHHHHHHH-------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 630 RVIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v-------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
.|.|.++|++.|.+.+ ++.+.|.+.|+ |+||+||||||||+||||+|.+- +.+|+.+.+|||.|.
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPk----GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFvE~- 383 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPK----GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFVEM- 383 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcC----ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHHHH-
Confidence 3667777777766655 66788998886 99999999999999999999996 889999999999997
Q ss_pred hHhHhhcCCCccccccccccc
Q 004878 703 TVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 703 ~vs~liG~ppgyvG~~e~~~~ 723 (725)
|||-+-.+||
T Consensus 384 -----------~~g~~asrvr 393 (774)
T KOG0731|consen 384 -----------FVGVGASRVR 393 (774)
T ss_pred -----------hcccchHHHH
Confidence 7776655554
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=99.09 E-value=1.3e-09 Score=127.29 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=123.8
Q ss_pred ceEEc--CCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhc------CCeE
Q 004878 314 PILLG--ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS------GDVI 385 (725)
Q Consensus 314 iLL~G--p~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~------~~~I 385 (725)
-+..| |.+.||||+|+++|+++... ..+.+++++|.++.. .. ..++.++..+... +..|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~-----~~~~~~lElNASd~r----gi----d~IR~iIk~~a~~~~~~~~~~KV 633 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGE-----NWRHNFLELNASDER----GI----NVIREKVKEFARTKPIGGASFKI 633 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcc-----cccCeEEEEeCCCcc----cH----HHHHHHHHHHHhcCCcCCCCCEE
Confidence 35668 99999999999999998321 124578888876531 11 1345555443321 2369
Q ss_pred EEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHH
Q 004878 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAV 463 (725)
Q Consensus 386 L~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~ 463 (725)
+||||+|.| ..++++.|+..++. +.+.+|++||... .+.+++++||+.+.|.+|+.++..
T Consensus 634 vIIDEaD~L-------------t~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~ 695 (846)
T PRK04132 634 IFLDEADAL-------------TQDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIA 695 (846)
T ss_pred EEEECcccC-------------CHHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHH
Confidence 999999999 44789999999995 7789999999876 677999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q 004878 464 RILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 464 ~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~ 515 (725)
..|+.++++ .++.++++++..++..+++.+ .+++.+++.++.
T Consensus 696 ~~L~~I~~~----Egi~i~~e~L~~Ia~~s~GDl------R~AIn~Lq~~~~ 737 (846)
T PRK04132 696 KRLRYIAEN----EGLELTEEGLQAILYIAEGDM------RRAINILQAAAA 737 (846)
T ss_pred HHHHHHHHh----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHHH
Confidence 999888773 468889999999999998764 377888876553
No 194
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.07 E-value=1.5e-09 Score=127.96 Aligned_cols=194 Identities=20% Similarity=0.318 Sum_probs=121.9
Q ss_pred hhhhhhhhh--cCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 278 VDLTARASE--ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 278 ~~l~~~~~~--~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
..+++.... ..|++++|++..++.+.+.+.+ ....+|+|+|++|||||++|+++...... .+.+++.+|
T Consensus 362 ~~lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~ 434 (686)
T PRK15429 362 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMN 434 (686)
T ss_pred HHHHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEe
Confidence 344444443 4678999999999998876654 45668999999999999999999886532 266788888
Q ss_pred hhhhhccc-------cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC----
Q 004878 354 MGLLMAGA-------KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---- 422 (725)
Q Consensus 354 ~~~l~~g~-------~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---- 422 (725)
|..+..+. ...|.+..........+....+.+||||||+.+ ..+++..|..+++.+
T Consensus 435 c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L-------------~~~~Q~~L~~~l~~~~~~~ 501 (686)
T PRK15429 435 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM-------------PLELQPKLLRVLQEQEFER 501 (686)
T ss_pred cccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC-------------CHHHHHHHHHHHHhCCEEe
Confidence 87653210 001111110011111222344679999999999 456777777777543
Q ss_pred ---------CeEEEEeccchhhh--hhhcccHHHHcccceEEecCCCHHHHHH----HHHHHHHHHHhccC--C-CCCHH
Q 004878 423 ---------ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHN--C-KFTLE 484 (725)
Q Consensus 423 ---------~v~vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~----IL~~~~~~~~~~~~--~-~i~~~ 484 (725)
.+++|++|+.+-.. ..-.+...|..|+..+.|..|+..+|.+ +++.++.++...++ + .++++
T Consensus 502 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 502 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 46899988775311 1123455677788777777776655554 44444444433323 2 47888
Q ss_pred HHHHHHH
Q 004878 485 AINAAVH 491 (725)
Q Consensus 485 ~l~~l~~ 491 (725)
+++.+..
T Consensus 582 al~~L~~ 588 (686)
T PRK15429 582 TLRTLSN 588 (686)
T ss_pred HHHHHHh
Confidence 8877654
No 195
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=4.2e-09 Score=111.09 Aligned_cols=172 Identities=15% Similarity=0.139 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc-----------cCCCeEEEeehhhhhccccc
Q 004878 296 ETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-----------LLSKRIMSLDMGLLMAGAKE 363 (725)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-----------l~~~~l~~ld~~~l~~g~~~ 363 (725)
+..++++...+.+.+..| +||+||+|+||+++|..+|+.+...+.... ....+++.++...-..+.+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 456778888887766666 789999999999999999998865321100 00111222210000001000
Q ss_pred -cchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccchhhh
Q 004878 364 -RGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHR 436 (725)
Q Consensus 364 -~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~~~~ 436 (725)
..-..+.++.+.+.+.. ++..|++||++|.+ ....+|.|++.||.. .+++|.+++..+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~~~fiL~~~~~~-- 154 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-------------NRAACNALLKTLEEPSPGRYLWLISAQPA-- 154 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-------------CHHHHHHHHHHhhCCCCCCeEEEEECChh--
Confidence 00123446666665543 34579999999999 557889999999964 667777777665
Q ss_pred hhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhh
Q 004878 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 437 ~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~ 495 (725)
.+.|.+++||+.+.|.+|+.++....|.. . .+++.....++.++.+
T Consensus 155 ---~lLpTIrSRCq~i~~~~~~~~~~~~~L~~--------~--~~~~~~a~~~~~l~~G 200 (319)
T PRK08769 155 ---RLPATIRSRCQRLEFKLPPAHEALAWLLA--------Q--GVSERAAQEALDAARG 200 (319)
T ss_pred ---hCchHHHhhheEeeCCCcCHHHHHHHHHH--------c--CCChHHHHHHHHHcCC
Confidence 67899999999999999999987776642 1 2444445555666554
No 196
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.06 E-value=2.8e-10 Score=109.72 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=73.2
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~ID 389 (725)
+..+++|+||+|||||.+|+++++.+.. ....+++.+|++.+..+......+...+...-..+......|+|||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~------~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllD 75 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV------GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLD 75 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-------SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc------CCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhH
Confidence 4568999999999999999999999941 1256889999988875211111111111111111111222399999
Q ss_pred cchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeEEEEeccchh
Q 004878 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIASTTQDE 434 (725)
Q Consensus 390 Eid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~at~~~~ 434 (725)
|||.+.+..+.+ .+.....+++.|+++++.+ ++++|+|+|...
T Consensus 76 EidKa~~~~~~~--~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 76 EIDKAHPSNSGG--ADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TGGGCSHTTTTC--SHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred HHhhcccccccc--chhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 999996642211 1123447899999988743 357888888654
No 197
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.06 E-value=4.2e-09 Score=122.22 Aligned_cols=161 Identities=21% Similarity=0.302 Sum_probs=101.5
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhc----CCCcc---------------------
Q 004878 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EVPVF--------------------- 343 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~----~~p~~--------------------- 343 (725)
|..|+|++..+..+.-.+......++||.|++|||||++|++|+..+..- ..++.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 56899999998887766665556789999999999999999999887210 00000
Q ss_pred cCCCeEEEeehhhhh---ccccccchHHHHHHH---HH--HHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHH
Q 004878 344 LLSKRIMSLDMGLLM---AGAKERGELEARVTT---LI--SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (725)
Q Consensus 344 l~~~~l~~ld~~~l~---~g~~~~g~~~~~l~~---~~--~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L 415 (725)
.....++.+.++... .|..+ ++..+.. .+ ..+....+.|||||||+.+ ..++++.|
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~d---~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-------------~~~~q~~L 146 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSLD---IERALREGEKAFQPGLLAEAHRGILYIDEVNLL-------------DDHLVDVL 146 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCccc---HHHHhhcCCeeecCcceeecCCCeEEeChhhhC-------------CHHHHHHH
Confidence 012233333332211 11110 1111100 00 0011224569999999999 45678888
Q ss_pred hhhhcCCC---------------eEEEEeccchhhhhhhcccHHHHcccc-eEEecCC-CHHHHHHHHHHH
Q 004878 416 KPSLGRGE---------------LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEP-SQEDAVRILLGL 469 (725)
Q Consensus 416 ~~~l~~~~---------------v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~P-s~ee~~~IL~~~ 469 (725)
+..++.+. +.+|+++|+.+ ..+.++|..||. .|.++.+ +.+++.++++..
T Consensus 147 l~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e----g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE----GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred HHHHhcCCEEEEECCceeeecCCeEEEEecCCCC----CCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 88887653 68889888754 257789999995 5677766 457777777653
No 198
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=4.7e-10 Score=113.99 Aligned_cols=198 Identities=19% Similarity=0.274 Sum_probs=105.8
Q ss_pred ccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCC-CcccCCCeEEEe-ehhhh------------
Q 004878 292 VIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV-PVFLLSKRIMSL-DMGLL------------ 357 (725)
Q Consensus 292 liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~-p~~l~~~~l~~l-d~~~l------------ 357 (725)
++||++++++|.+++.......++|+||.|+|||++++.+...+...+. ..+......... .....
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 5899999999999998877788999999999999999999998743221 111101000000 00000
Q ss_pred -h----ccc-------cccchHHHHHHHHHHHHHhc-CCeEEEEccchhhh-hCCCCCCCCCCCcHHHHHHHhhhhcCCC
Q 004878 358 -M----AGA-------KERGELEARVTTLISEIQKS-GDVILFIDEVHTLI-GSGTVGRGNKGTGLDISNLLKPSLGRGE 423 (725)
Q Consensus 358 -~----~g~-------~~~g~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~-~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 423 (725)
. ... .........+..+++.+... ...||+|||++.+. ..... ..-...+.+.+....+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED----KDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT----HHHHHHHHHHHHH----TT
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch----HHHHHHHHHHHhhccccCC
Confidence 0 000 01123445567777777654 35999999999996 21100 0011233344444444566
Q ss_pred eEEEEeccchh-hhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 424 LQCIASTTQDE-HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 424 v~vI~at~~~~-~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
+.+|.+++... +.........+..|+..+.+++.+.++..+++....... .++.++++.++.+..++.++
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 66665555443 222234445567788779999999999999998866532 12245899999999988875
No 199
>PHA02244 ATPase-like protein
Probab=99.06 E-value=1.7e-09 Score=114.14 Aligned_cols=124 Identities=18% Similarity=0.267 Sum_probs=81.0
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh--hh-hccc-cccchHHHHHHHHHHHHHhcCCe
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG--LL-MAGA-KERGELEARVTTLISEIQKSGDV 384 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~--~l-~~g~-~~~g~~~~~l~~~~~~~~~~~~~ 384 (725)
....+++|+||+|||||++|++++..+ +.+++.++.. .+ ..|. ...+.|. -..++..+. .+.
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g~~~--dgpLl~A~~--~Gg 182 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANGKFH--ETPFYEAFK--KGG 182 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhccccccccccc--chHHHHHhh--cCC
Confidence 346689999999999999999999987 4445554421 10 0110 1112221 112333232 356
Q ss_pred EEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------------CCCeEEEEeccchh------hhhhhcccHHH
Q 004878 385 ILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------------RGELQCIASTTQDE------HRTQFEKDKAL 445 (725)
Q Consensus 385 IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------------~~~v~vI~at~~~~------~~~~~~ld~~L 445 (725)
+|||||++.+ ..+++..|..+++ ...+.+|+|+|+.. |.....+++++
T Consensus 183 vLiLDEId~a-------------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~Al 249 (383)
T PHA02244 183 LFFIDEIDAS-------------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGAT 249 (383)
T ss_pred EEEEeCcCcC-------------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHH
Confidence 9999999988 3456666666664 25679999999842 21224789999
Q ss_pred HcccceEEecCCCH
Q 004878 446 ARRFQPVLISEPSQ 459 (725)
Q Consensus 446 ~~Rf~~I~i~~Ps~ 459 (725)
++||..|+++.|+.
T Consensus 250 lDRFv~I~~dyp~~ 263 (383)
T PHA02244 250 LDRFAPIEFDYDEK 263 (383)
T ss_pred HhhcEEeeCCCCcH
Confidence 99999999999974
No 200
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-10 Score=114.69 Aligned_cols=61 Identities=31% Similarity=0.578 Sum_probs=54.3
Q ss_pred HHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 644 AVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 644 ~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
+-++.+.|+.+|+ |+|||||||||||++|+|+|+.. +.-|||+=+||+..| |||++-..||
T Consensus 200 perfv~lgidppk----gvllygppgtgktl~aravanrt---dacfirvigselvqk------------yvgegarmvr 260 (435)
T KOG0729|consen 200 PERFVNLGIDPPK----GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELVQK------------YVGEGARMVR 260 (435)
T ss_pred HHHHhhcCCCCCC----ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHHHH------------HhhhhHHHHH
Confidence 3477788998886 99999999999999999999986 788999999999998 9998877665
No 201
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.04 E-value=1.8e-09 Score=116.98 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=93.5
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee----hhhhhcccccc
Q 004878 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD----MGLLMAGAKER 364 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld----~~~l~~g~~~~ 364 (725)
++++++.++.++.+...+.. +.|++|+||||||||++|+.++..+.....+. ....+.+. ...++.|....
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~---~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ---RVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccc---eeeEEeecccccHHHHhcccCCC
Confidence 45677888899998888775 67899999999999999999999874321111 12222221 22333232111
Q ss_pred c-hH---HHHHHHHHHHHHhc--CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh-------------------
Q 004878 365 G-EL---EARVTTLISEIQKS--GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL------------------- 419 (725)
Q Consensus 365 g-~~---~~~l~~~~~~~~~~--~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l------------------- 419 (725)
+ .+ ...+.+++..+... .+.+||||||++.-.. .+...+..++
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d 316 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWSVPLTYSEND 316 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH------------Hhhhhhhhhccccccccccceeeeccccc
Confidence 1 00 01233444445432 5789999999865211 1111111111
Q ss_pred -----cCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCC
Q 004878 420 -----GRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEP 457 (725)
Q Consensus 420 -----~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~P 457 (725)
-..++.+|||+|..+ +....+|.+|+|||..|++.+.
T Consensus 317 ~e~f~iP~Nl~IIgTMNt~D-rs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 317 EERFYVPENVYIIGLMNTAD-RSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred cccccCCCCeEEEEecCccc-cchhhccHHHHhhhheEEecCC
Confidence 124579999999887 4455789999999999999863
No 202
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.04 E-value=1.6e-10 Score=120.82 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=49.9
Q ss_pred cCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccccccC
Q 004878 650 VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSRM 724 (725)
Q Consensus 650 ~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~~ 724 (725)
.|++.| .+++||||||||||++|++||+++ +.++|.++++|+.++ |+|.+|+++|.
T Consensus 143 ~~ik~P----lgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk------------~vGEsEk~IR~ 198 (413)
T PLN00020 143 PNIKVP----LILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE------------NAGEPGKLIRQ 198 (413)
T ss_pred cCCCCC----eEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC------------cCCcHHHHHHH
Confidence 345544 399999999999999999999998 779999999999998 99999999883
No 203
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.6e-09 Score=109.49 Aligned_cols=174 Identities=27% Similarity=0.377 Sum_probs=116.0
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccc-hHHHHHHHHHHHH----HhcCCe
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG-ELEARVTTLISEI----QKSGDV 384 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g-~~~~~l~~~~~~~----~~~~~~ 384 (725)
.+.|+||.||+|+|||.|++.||+.+ +.++...||..+... .|.| +.+..|..++..+ .+.+..
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQA-GYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQA-GYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhhc-ccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 47899999999999999999999998 666777788877643 3444 4666677777665 345677
Q ss_pred EEEEccchhhhhCC-CCCCCCCCCcHHHHHHHhhhhcC---------------C--------CeEEEEeccch-------
Q 004878 385 ILFIDEVHTLIGSG-TVGRGNKGTGLDISNLLKPSLGR---------------G--------ELQCIASTTQD------- 433 (725)
Q Consensus 385 IL~IDEid~l~~~~-~~~~~~~~~~~~~~~~L~~~l~~---------------~--------~v~vI~at~~~------- 433 (725)
|+||||+|.+..+. +....-+-++..++..|+.+++. + ++.+|+..-..
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 99999999996321 11100013455688888888762 1 12333321100
Q ss_pred --------------------------------hhh------------hhhcccHHHHccc-ceEEecCCCHHHHHHHHHH
Q 004878 434 --------------------------------EHR------------TQFEKDKALARRF-QPVLISEPSQEDAVRILLG 468 (725)
Q Consensus 434 --------------------------------~~~------------~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~ 468 (725)
.-+ -.+.+-|.|..|| -.|.+...+.++++++|..
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 000 0123457888899 4688889999999999875
Q ss_pred ----HHHHHHhcc-----CCCCCHHHHHHHHHHhh
Q 004878 469 ----LREKYEAHH-----NCKFTLEAINAAVHLSA 494 (725)
Q Consensus 469 ----~~~~~~~~~-----~~~i~~~~l~~l~~~s~ 494 (725)
+..+|.... .+.+++++++.+++++-
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al 488 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLAL 488 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHH
Confidence 555554332 34689999999988764
No 204
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.04 E-value=3.1e-09 Score=119.62 Aligned_cols=186 Identities=17% Similarity=0.234 Sum_probs=115.9
Q ss_pred cCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHh-cCCCcccCCCeEEEeehhhhhccc--
Q 004878 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQ-AEVPVFLLSKRIMSLDMGLLMAGA-- 361 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~-~~~p~~l~~~~l~~ld~~~l~~g~-- 361 (725)
..|++++|.+..++++.+.+.+ ....+|||+|++||||+.+|+++...... .+......+.+++.+||..+....
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 4578899999999998888654 56678999999999999999999986211 110011236788899987653100
Q ss_pred -----cccchHHHHH----HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC---------
Q 004878 362 -----KERGELEARV----TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--------- 423 (725)
Q Consensus 362 -----~~~g~~~~~l----~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~--------- 423 (725)
...|.|...- ..+++ ...+..||||||+.| ....+..|..+++.+.
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~L-------------p~~~Q~kLl~~L~e~~~~r~G~~~~ 359 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFE---IAHGGTLFLDEIGEM-------------PLPLQTRLLRVLEEKEVTRVGGHQP 359 (538)
T ss_pred HHhcCCccccccCccccccCCchh---ccCCCEEEEcChHhC-------------CHHHHHHHHhhhhcCeEEecCCCce
Confidence 0011111000 11222 234668999999999 5577888888887543
Q ss_pred ----eEEEEeccchhhh--hhhcccHHHHcccceEEecCCCHHHHHHH----HHHHHHHHHhccCCCCCHHHHHH
Q 004878 424 ----LQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAVRI----LLGLREKYEAHHNCKFTLEAINA 488 (725)
Q Consensus 424 ----v~vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~I----L~~~~~~~~~~~~~~i~~~~l~~ 488 (725)
+++|++|+.+--. ..-...+.|..|+..+.|..|+..+|.+- ++.++.++....+..++++++..
T Consensus 360 ~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 360 VPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred eccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 4789888775311 11123455666777777777766555544 44444443333455577766543
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=7e-09 Score=110.69 Aligned_cols=178 Identities=15% Similarity=0.170 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------cCCCeEEEeehhhhhcc
Q 004878 296 ETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--------------LLSKRIMSLDMGLLMAG 360 (725)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~--------------l~~~~l~~ld~~~l~~g 360 (725)
+...+++...+...+..| +||+||+|+||+++|.++|+.+...+.... ....+++.+.... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~ 84 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---G 84 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---c
Confidence 456778888887755554 579999999999999999999864211100 0011222221110 0
Q ss_pred ccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccchh
Q 004878 361 AKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDE 434 (725)
Q Consensus 361 ~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~~ 434 (725)
... --.+.++.+.+.+. .++..|++||++|.+ ...+.|.|++.||+ +..++|..|...+
T Consensus 85 ~~~--I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 85 KSS--LGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-------------TDAAANALLKTLEEPPENTWFFLACREPA 149 (334)
T ss_pred ccc--CCHHHHHHHHHHHhhccccCCceEEEEcchHhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 000 11234555555543 345679999999999 55789999999996 4567777777665
Q ss_pred hhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHH
Q 004878 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (725)
Q Consensus 435 ~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~ 511 (725)
.+.|.++|||+.+.|++|+.++....|.. ...++++....++.++++. |.+|.++++
T Consensus 150 -----~lLpTIrSRCq~~~~~~~~~~~~~~~L~~---------~~~~~~~~a~~~~~la~G~------~~~Al~l~~ 206 (334)
T PRK07993 150 -----RLLATLRSRCRLHYLAPPPEQYALTWLSR---------EVTMSQDALLAALRLSAGA------PGAALALLQ 206 (334)
T ss_pred -----hChHHHHhccccccCCCCCHHHHHHHHHH---------ccCCCHHHHHHHHHHcCCC------HHHHHHHhc
Confidence 78899999999999999999887776632 1135566666667776653 345555543
No 206
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.03 E-value=2.1e-09 Score=122.08 Aligned_cols=185 Identities=20% Similarity=0.269 Sum_probs=119.8
Q ss_pred CCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc----
Q 004878 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---- 361 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~---- 361 (725)
.++.+||+...++++.+.+.+ ....+|||+|++||||+++|+++...... .+.+++.+||..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCChHHHHHH
Confidence 567899999999998888766 56678999999999999999999987633 25678888887653100
Q ss_pred ---cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeE
Q 004878 362 ---KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (725)
Q Consensus 362 ---~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 425 (725)
...|.+...............+..||||||+.| ..+++..|..+++.+ .++
T Consensus 258 lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 258 LFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGEL-------------PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred hcCccccccCCCcccCCcchhhcCCCEEEecChhhC-------------CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 000100000000000112334668999999999 456777777777654 358
Q ss_pred EEEeccchhhh--hhhcccHHHHcccceEEecCCCHHHH----HHHHHHHHHHHHhcc---CCCCCHHHHHHHHHH
Q 004878 426 CIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHH---NCKFTLEAINAAVHL 492 (725)
Q Consensus 426 vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~ee~----~~IL~~~~~~~~~~~---~~~i~~~~l~~l~~~ 492 (725)
+|++|+.+-.. ..-.+...|..|+..+.|..|+..+| ..+++.++.++...+ .+.+++++++.+..+
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y 400 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY 400 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 99988875311 11235567777887666776655444 444445555544332 357899988877653
No 207
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.02 E-value=4.3e-09 Score=118.59 Aligned_cols=179 Identities=19% Similarity=0.235 Sum_probs=116.6
Q ss_pred cCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc---
Q 004878 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA--- 361 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~--- 361 (725)
..|++++|..+.++++.+.+.+ ....+|||+|++||||+.+|+++...... .+.+++.+||..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCChhHHHH
Confidence 5688899999999998887754 56678999999999999999999876533 25678888887653100
Q ss_pred ----cccchHHHH----HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC----------
Q 004878 362 ----KERGELEAR----VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE---------- 423 (725)
Q Consensus 362 ----~~~g~~~~~----l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~---------- 423 (725)
...|.|... -..+++ ...+..||||||+.| ..+++..|..+++.+.
T Consensus 282 eLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~L-------------p~~~Q~~Ll~~L~~~~~~r~g~~~~~ 345 (526)
T TIGR02329 282 ELFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEM-------------PLPLQTRLLRVLEEREVVRVGGTEPV 345 (526)
T ss_pred HhcCCcccccccccccccccchh---hcCCceEEecChHhC-------------CHHHHHHHHHHHhcCcEEecCCCcee
Confidence 001111100 011222 234568999999999 5577888888887543
Q ss_pred ---eEEEEeccchhhh--hhhcccHHHHcccceEEecCCCHHHHH----HHHHHHHHHHHhccCCCCCHHHHHH
Q 004878 424 ---LQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHNCKFTLEAINA 488 (725)
Q Consensus 424 ---v~vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~ee~~----~IL~~~~~~~~~~~~~~i~~~~l~~ 488 (725)
+++|++|+.+-.. ..-.+.+.|..|+..+.|..|+..+|. .++..++.++....++.+++++++.
T Consensus 346 ~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 346 PVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred eecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4788888765311 111234556667766666666555544 4445555555444456688888766
No 208
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.02 E-value=2.7e-09 Score=102.57 Aligned_cols=139 Identities=24% Similarity=0.348 Sum_probs=86.2
Q ss_pred ccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc--------cc
Q 004878 292 VIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--------GA 361 (725)
Q Consensus 292 liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~--------g~ 361 (725)
+||.+..++++.+.+.+ ....+|||+|++||||+.+|+++...... .+.+++.+||..+.. |.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcchhhhhhhcc
Confidence 57888888888887766 55688999999999999999999885432 367889999976531 11
Q ss_pred cccchHH---HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeE
Q 004878 362 KERGELE---ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (725)
Q Consensus 362 ~~~g~~~---~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 425 (725)
..+.+. ..-..+++ ...+.+||||||+.| ..+++..|..+++.+ +++
T Consensus 74 -~~~~~~~~~~~~~G~l~---~A~~GtL~Ld~I~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 74 -EKGAFTGARSDKKGLLE---QANGGTLFLDEIEDL-------------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp -CSSSSTTTSSEBEHHHH---HTTTSEEEEETGGGS--------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred -ccccccccccccCCcee---eccceEEeecchhhh-------------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 000000 00012333 344679999999999 567888888888743 478
Q ss_pred EEEeccchh--hhhhhcccHHHHcccceEEe
Q 004878 426 CIASTTQDE--HRTQFEKDKALARRFQPVLI 454 (725)
Q Consensus 426 vI~at~~~~--~~~~~~ld~~L~~Rf~~I~i 454 (725)
+|++|+.+- +-..-.+.+.|..|+..+.|
T Consensus 137 iI~st~~~l~~~v~~g~fr~dLy~rL~~~~i 167 (168)
T PF00158_consen 137 IIASTSKDLEELVEQGRFREDLYYRLNVFTI 167 (168)
T ss_dssp EEEEESS-HHHHHHTTSS-HHHHHHHTTEEE
T ss_pred EEeecCcCHHHHHHcCCChHHHHHHhceEec
Confidence 999988653 11112344555556554443
No 209
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.02 E-value=7.1e-10 Score=118.72 Aligned_cols=185 Identities=20% Similarity=0.288 Sum_probs=123.8
Q ss_pred CCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc-----
Q 004878 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG----- 360 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g----- 360 (725)
.++.+||+...+.++.+.+.. +...+|||.|++||||..+|++|.+...+. +++++.+||+.+-.+
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~-------~kPfV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRR-------DKPFVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCccc-------CCCceeeeccccchHHHHHH
Confidence 466899999999998887665 667789999999999999999999887553 677888888766421
Q ss_pred --ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------------eE
Q 004878 361 --AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQ 425 (725)
Q Consensus 361 --~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-------------v~ 425 (725)
...+|.|...+..-.....-..+..||+|||..| ...++.-|+..++.++ |+
T Consensus 294 LFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-------------PL~lQaKLLRvLQegEieRvG~~r~ikVDVR 360 (550)
T COG3604 294 LFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-------------PLALQAKLLRVLQEGEIERVGGDRTIKVDVR 360 (550)
T ss_pred HhcccccccccchhccCcceeecCCCeEechhhccC-------------CHHHHHHHHHHHhhcceeecCCCceeEEEEE
Confidence 1234444433332222222245679999999988 6678888888887654 58
Q ss_pred EEEeccchhhhhh--hcccHHHHcccceEEecCCCHHH----HHHHHHHHHHHHHhcc---CCCCCHHHHHHHHHH
Q 004878 426 CIASTTQDEHRTQ--FEKDKALARRFQPVLISEPSQED----AVRILLGLREKYEAHH---NCKFTLEAINAAVHL 492 (725)
Q Consensus 426 vI~at~~~~~~~~--~~ld~~L~~Rf~~I~i~~Ps~ee----~~~IL~~~~~~~~~~~---~~~i~~~~l~~l~~~ 492 (725)
+|++||.+-.... -..-..|-.|+.++.+..|...| ..-+...+++++.... .+.+++++++.+.++
T Consensus 361 iIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 361 VIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 9999998631110 01223344477667776665443 3344444555554333 457899998887653
No 210
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.6e-10 Score=121.87 Aligned_cols=74 Identities=38% Similarity=0.517 Sum_probs=61.7
Q ss_pred eeCcHHHHHHHHHH-------HHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhh
Q 004878 631 VIGQDEAVAAISRA-------VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHT 703 (725)
Q Consensus 631 v~Gq~~a~~~i~~~-------v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~ 703 (725)
|.|-|+|+..+.+. -++.+.|-+-|+ |+||+||||||||+||+|+|.+- +.+|....+|||-|-
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPK----GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFdEm-- 376 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPK----GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFDEM-- 376 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCC----ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchhhh--
Confidence 55555555555444 466778888775 99999999999999999999997 789999999999988
Q ss_pred HhHhhcCCCccccccccccc
Q 004878 704 VSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 704 vs~liG~ppgyvG~~e~~~~ 723 (725)
|||-+-.+||
T Consensus 377 ----------~VGvGArRVR 386 (752)
T KOG0734|consen 377 ----------FVGVGARRVR 386 (752)
T ss_pred ----------hhcccHHHHH
Confidence 9999988887
No 211
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.00 E-value=1.4e-08 Score=99.12 Aligned_cols=167 Identities=19% Similarity=0.290 Sum_probs=119.4
Q ss_pred CCCcccccHHHHHHHHHHHh----cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccc
Q 004878 288 LIDPVIGRETEIQRIIQILC----RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~----~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~ 363 (725)
.+.+++|-+.+.+.|++-.. -..-||+||+|..|+|||++++++..++... +.++++++-.++..
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~~---- 126 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLAT---- 126 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHhh----
Confidence 44578998888777776433 3667999999999999999999999998653 77789987666542
Q ss_pred cchHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC------CCeEEEEeccchhhh
Q 004878 364 RGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------GELQCIASTTQDEHR 436 (725)
Q Consensus 364 ~g~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------~~v~vI~at~~~~~~ 436 (725)
+-.+++.++.. ...|||+||+-. +.+.+....|+..|+. .+|++.+|+|.....
T Consensus 127 -------Lp~l~~~Lr~~~~kFIlFcDDLSF------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 127 -------LPDLVELLRARPEKFILFCDDLSF------------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred -------HHHHHHHHhcCCceEEEEecCCCC------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccc
Confidence 55666666643 578999998842 3344567788888874 357777877754211
Q ss_pred h-hh--------ccc--------HHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Q 004878 437 T-QF--------EKD--------KALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488 (725)
Q Consensus 437 ~-~~--------~ld--------~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~ 488 (725)
. .+ +++ -+|..|| -.+.|.+++.++-.+|+..+++ +.++.++++.++.
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~----~~~l~~~~e~l~~ 253 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAK----HFGLDISDEELHA 253 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHH
Confidence 1 00 111 1355699 5799999999999999988887 5588887765543
No 212
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.00 E-value=3.8e-09 Score=123.77 Aligned_cols=177 Identities=19% Similarity=0.251 Sum_probs=118.6
Q ss_pred CCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccc
Q 004878 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g 365 (725)
.|+.++|.+..++++.+.+.+ ....+|+|+|++||||+++|+++...... .+.+++.+||..+...
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~~----- 390 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPDE----- 390 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCChH-----
Confidence 688999999999988887765 55677999999999999999999987633 2567888888765310
Q ss_pred hHHHHHHHHHH------------HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-----------
Q 004878 366 ELEARVTTLIS------------EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (725)
Q Consensus 366 ~~~~~l~~~~~------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----------- 422 (725)
.++ ..+|. .+....+.+||||||+.| ..+++..|..+++.+
T Consensus 391 ~~~---~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 391 ALA---EEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL-------------SPELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHH---HHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceE
Confidence 000 01111 111234679999999999 557788888888754
Q ss_pred --CeEEEEeccchhhh--hhhcccHHHHcccceEEecCCCHHHHH----HHHHHHHHHHHhcc--CCCCCHHHHHHHHHH
Q 004878 423 --ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHH--NCKFTLEAINAAVHL 492 (725)
Q Consensus 423 --~v~vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~ee~~----~IL~~~~~~~~~~~--~~~i~~~~l~~l~~~ 492 (725)
.+++|++|+.+... ..-...+.|..|+..+.|..|+..+|. .+++.++.++...+ .+.+++++++.+..+
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 35789988875311 112345667778877777777655554 44444554443222 356888888877653
No 213
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.9e-10 Score=111.92 Aligned_cols=77 Identities=29% Similarity=0.568 Sum_probs=62.2
Q ss_pred cCceeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 628 KKRVIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
-+.|.|.++-+..|.+.+ .+...|+..|. |+|||||||||||+||+|+|..- ...|||+.+||+.
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK----GvlLygppgtGktLlaraVahht---~c~firvsgselv 218 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK----GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV 218 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc----ceEEecCCCCchhHHHHHHHhhc---ceEEEEechHHHH
Confidence 345777777777776665 34557888885 99999999999999999999885 8899999999998
Q ss_pred chhhHhHhhcCCCccccccccccc
Q 004878 700 ERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 700 ~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
.| |+|.+...||
T Consensus 219 qk------------~igegsrmvr 230 (404)
T KOG0728|consen 219 QK------------YIGEGSRMVR 230 (404)
T ss_pred HH------------HhhhhHHHHH
Confidence 87 7777766555
No 214
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.98 E-value=1.5e-08 Score=114.92 Aligned_cols=206 Identities=15% Similarity=0.155 Sum_probs=125.3
Q ss_pred CcccccHHHHHHHHHHHhcCC------------CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh
Q 004878 290 DPVIGRETEIQRIIQILCRRT------------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~~------------~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l 357 (725)
..++|++.....+.-.+.... ..|+||+|+||+|||++++.+++..... + +..+.. .++..+
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~--~-~~~~~~---~~~~~l 276 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA--V-YTTGKG---SSAVGL 276 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc--e-EcCCCC---CCcCCc
Confidence 468899987666665554321 1389999999999999999999876321 0 000000 011111
Q ss_pred hccc---cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC------------
Q 004878 358 MAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ 422 (725)
Q Consensus 358 ~~g~---~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------ 422 (725)
.... ...|++.-.- . .+....+.+++|||++.+ ....+..|...|+++
T Consensus 277 ~~~~~~~~~~g~~~~~~-G---~l~~A~~Gil~iDEi~~l-------------~~~~q~~L~e~me~~~i~i~k~G~~~~ 339 (509)
T smart00350 277 TAAVTRDPETREFTLEG-G---ALVLADNGVCCIDEFDKM-------------DDSDRTAIHEAMEQQTISIAKAGITTT 339 (509)
T ss_pred cccceEccCcceEEecC-c---cEEecCCCEEEEechhhC-------------CHHHHHHHHHHHhcCEEEEEeCCEEEE
Confidence 1100 0011111000 0 011234569999999999 335566777776543
Q ss_pred ---CeEEEEeccchh--hh------hhhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHHHhc-------cCCCCC
Q 004878 423 ---ELQCIASTTQDE--HR------TQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAH-------HNCKFT 482 (725)
Q Consensus 423 ---~v~vI~at~~~~--~~------~~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~~~~-------~~~~i~ 482 (725)
.+.+|+++|+.+ |. ..+.+.+++.+||. .+.++.|+.+...+|++.+...+... ....++
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~ 419 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS 419 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence 357899999764 11 22478999999995 45667899999999998876543211 112467
Q ss_pred HHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHH
Q 004878 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519 (725)
Q Consensus 483 ~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~ 519 (725)
.+.+.....++..++.- .+++.+.+.+...+...+.
T Consensus 420 ~~~l~~yi~~ar~~~~P-~ls~~~~~~i~~~y~~~R~ 455 (509)
T smart00350 420 QEFLRKYIAYAREKIKP-KLSEEAAEKLVKAYVDLRK 455 (509)
T ss_pred HHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhcc
Confidence 77888888888774321 3577788877776665543
No 215
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-08 Score=104.18 Aligned_cols=112 Identities=25% Similarity=0.289 Sum_probs=78.6
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC------------CCeEEEEeccchhhhhhhcccHHHHccc
Q 004878 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (725)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------~~v~vI~at~~~~~~~~~~ld~~L~~Rf 449 (725)
+..|+||||||.++..+..+.+ +-+...++.-|+++++. ..+.+|++....- .+-..+-|.|..||
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~-sKPSDLiPELQGRf 327 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHV-AKPSDLIPELQGRF 327 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceec-CChhhcChhhcCCC
Confidence 3569999999999977654321 23345577778888874 3467887754332 12236779999999
Q ss_pred -ceEEecCCCHHHHHHHHHH----HHHHHHhc-----cCCCCCHHHHHHHHHHhhh
Q 004878 450 -QPVLISEPSQEDAVRILLG----LREKYEAH-----HNCKFTLEAINAAVHLSAR 495 (725)
Q Consensus 450 -~~I~i~~Ps~ee~~~IL~~----~~~~~~~~-----~~~~i~~~~l~~l~~~s~~ 495 (725)
-.|++...+.++-..||.. +.++|... ..+.|++++++.+++.+-.
T Consensus 328 PIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~ 383 (444)
T COG1220 328 PIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQ 383 (444)
T ss_pred ceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHH
Confidence 4799999999999999875 55666322 2456899999988887643
No 216
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.98 E-value=4.2e-09 Score=119.64 Aligned_cols=182 Identities=13% Similarity=0.219 Sum_probs=116.9
Q ss_pred hcCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc----
Q 004878 286 EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---- 359 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~---- 359 (725)
...|+.++|.+..++++++.+.+ ....+++|+|++||||+++|+++...... .+.+++.+||..+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIPDDVVE 272 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCCHHHHH
Confidence 45789999999999888887754 55678999999999999999998765432 245678888876531
Q ss_pred ----cccccchHHH---HHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC----------
Q 004878 360 ----GAKERGELEA---RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (725)
Q Consensus 360 ----g~~~~g~~~~---~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------- 422 (725)
|.. .|.+.. .-..+++ ...+..||||||+.| ...++..|..+++.+
T Consensus 273 ~elFG~~-~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 273 SELFGHA-PGAYPNALEGKKGFFE---QANGGSVLLDEIGEM-------------SPRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHhcCCC-CCCcCCcccCCCChhh---hcCCCEEEEeChhhC-------------CHHHHHHHHHHHhcCCcccCCCCcc
Confidence 100 000000 0011222 234568999999999 446677777777653
Q ss_pred ---CeEEEEeccchh--hhhhhcccHHHHcccceEEecCCCHHHHH----HHHHHHHHHHHhccC---CCCCHHHHHHHH
Q 004878 423 ---ELQCIASTTQDE--HRTQFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHN---CKFTLEAINAAV 490 (725)
Q Consensus 423 ---~v~vI~at~~~~--~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~----~IL~~~~~~~~~~~~---~~i~~~~l~~l~ 490 (725)
.+++|++|+.+. ....-...+.|..|+..+.|..|+..+|. .++..++.++...++ ..+++++++.+.
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~ 415 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 415 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHh
Confidence 357888877653 11112355778888876677766554444 444455555543333 368888887765
Q ss_pred H
Q 004878 491 H 491 (725)
Q Consensus 491 ~ 491 (725)
.
T Consensus 416 ~ 416 (520)
T PRK10820 416 R 416 (520)
T ss_pred c
Confidence 4
No 217
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.97 E-value=1.1e-08 Score=117.64 Aligned_cols=122 Identities=22% Similarity=0.276 Sum_probs=80.9
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-----------------------CeEEEEeccchhhhhh
Q 004878 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCIASTTQDEHRTQ 438 (725)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~at~~~~~~~~ 438 (725)
.+.+|||||++.| ..+.+..|+..++.+ ++.+|++++++. .
T Consensus 217 ngGtL~Ldei~~L-------------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---l 280 (608)
T TIGR00764 217 HKGVLYIDEIKTM-------------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---L 280 (608)
T ss_pred CCCEEEEEChHhC-------------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH---H
Confidence 3568888888888 245677777776532 467899988864 3
Q ss_pred hcccHHHHcccc---e-EEec--CC-CHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhhhhcccCCC----chhH
Q 004878 439 FEKDKALARRFQ---P-VLIS--EP-SQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDRYL----PDKA 506 (725)
Q Consensus 439 ~~ld~~L~~Rf~---~-I~i~--~P-s~ee~~~IL~~~~~~~~~~-~~~~i~~~~l~~l~~~s~~~i~~r~l----p~~a 506 (725)
..+++.|.+||. . +.|+ .| +.+.+.++++.+.+....+ .-..++++++..+++.+.|....+.. ..+.
T Consensus 281 ~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L 360 (608)
T TIGR00764 281 EGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLREL 360 (608)
T ss_pred hhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 368999999996 2 3333 23 5666667766666655544 23468999999999887776554443 3456
Q ss_pred HHHHHHHHHHHHH
Q 004878 507 IDLVDEAGSRAHI 519 (725)
Q Consensus 507 i~ll~~a~~~~~~ 519 (725)
.+++..|...+..
T Consensus 361 ~~llR~A~~iA~~ 373 (608)
T TIGR00764 361 GGLVRAAGDIAKS 373 (608)
T ss_pred HHHHHHHHHHHHh
Confidence 6677776554433
No 218
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.9e-10 Score=113.78 Aligned_cols=87 Identities=33% Similarity=0.431 Sum_probs=66.7
Q ss_pred HhHHHHhcCceeCcHHHHHHHHHHH----HHhhcCCCCC--CCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 621 VGLEEQLKKRVIGQDEAVAAISRAV----KRSRVGLKDP--NRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~v----~~~~~gl~~p--~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.++++.|.++|+||+.|+..++-++ +|.+...++- .-..+++||.||+|||||+||+.||+.| +-+|.--|
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiAD 129 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIAD 129 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeeecc
Confidence 5678889999999999999877554 3332211110 0112589999999999999999999999 88999889
Q ss_pred ccCCcchhhHhHhhcCCCccccccccc
Q 004878 695 MSEYMERHTVSKLIGSPPGYVGVGEYL 721 (725)
Q Consensus 695 ~sE~~~k~~vs~liG~ppgyvG~~e~~ 721 (725)
---+++. ||||.+=.+
T Consensus 130 ATtLTEA-----------GYVGEDVEN 145 (408)
T COG1219 130 ATTLTEA-----------GYVGEDVEN 145 (408)
T ss_pred ccchhhc-----------cccchhHHH
Confidence 8888884 999987543
No 219
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.97 E-value=7.4e-08 Score=100.52 Aligned_cols=169 Identities=18% Similarity=0.256 Sum_probs=97.3
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEE--eehhhhh------ccccccch----HHHHHHHHHH-
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS--LDMGLLM------AGAKERGE----LEARVTTLIS- 376 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~--ld~~~l~------~g~~~~g~----~~~~l~~~~~- 376 (725)
....++|+||+|+||||+++.++..+....+.. ..+.. .+...+. .|....+. ....+...+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~----~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVA----AKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE----eeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 345688999999999999999998874221100 00000 1111111 11111111 1122232222
Q ss_pred HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-----CCCeEEEEeccchhhhhhhc--ccHHHHccc
Q 004878 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIASTTQDEHRTQFE--KDKALARRF 449 (725)
Q Consensus 377 ~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~v~vI~at~~~~~~~~~~--ld~~L~~Rf 449 (725)
......+.+|+|||+|.+. .+..+.|..+.+ ...+.+|.+..+. +...+. ....+.+|+
T Consensus 118 ~~~~~~~~vliiDe~~~l~-------------~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~ 183 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLT-------------PELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRI 183 (269)
T ss_pred HHhCCCCeEEEEECcccCC-------------HHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhhe
Confidence 2234567899999999982 122333333222 1223445554443 222222 123577776
Q ss_pred -ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 450 -QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 450 -~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
..+.+++++.++...++...+..........+++++++.+.+.+.++
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~ 231 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI 231 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc
Confidence 57889999999999999888775533334578999999999999876
No 220
>CHL00181 cbbX CbbX; Provisional
Probab=98.97 E-value=7.2e-10 Score=115.99 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=62.2
Q ss_pred HHHHhHHHHhcCceeCcHHHHHHHHHHH-------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC----
Q 004878 618 MLLVGLEEQLKKRVIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS---- 686 (725)
Q Consensus 618 ~~l~~l~~~L~~~v~Gq~~a~~~i~~~v-------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~---- 686 (725)
..+.++.+.|.+.++|++++++.|...+ .+.+.|+..|..+. ++||+||||||||++|+++|+.++..
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~-~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGL-HMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc-eEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3456778888888999999999886554 23456877665333 79999999999999999999998642
Q ss_pred CCceEEecccCCcch
Q 004878 687 ESSMLRLDMSEYMER 701 (725)
Q Consensus 687 ~~~lIrid~sE~~~k 701 (725)
...++.++.+++..+
T Consensus 91 ~~~~~~v~~~~l~~~ 105 (287)
T CHL00181 91 KGHLLTVTRDDLVGQ 105 (287)
T ss_pred CCceEEecHHHHHHH
Confidence 234788887765443
No 221
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=1.3e-09 Score=118.33 Aligned_cols=181 Identities=19% Similarity=0.315 Sum_probs=122.4
Q ss_pred hcCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-----
Q 004878 286 EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----- 358 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~----- 358 (725)
..+|+++||..+.+.++++...+ +...+|||.|++||||..+|+++.+...+. +.+++.+||+.+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAiPe~LlE 313 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAIPETLLE 313 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccCCHHHHH
Confidence 45799999999999999998777 566789999999999999999999876553 6677888987653
Q ss_pred ---ccccccchHHHHHH----HHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC---------
Q 004878 359 ---AGAKERGELEARVT----TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (725)
Q Consensus 359 ---~g~~~~g~~~~~l~----~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------- 422 (725)
-|+ ..|.|....+ .+|+. ..+..||+|||..| ...++.-|+..|+..
T Consensus 314 SELFGy-e~GAFTGA~~~GK~GlfE~---A~gGTLFLDEIgem-------------pl~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 314 SELFGY-EKGAFTGASKGGKPGLFEL---ANGGTLFLDEIGEM-------------PLPLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHhCc-CCccccccccCCCCcceee---ccCCeEEehhhccC-------------CHHHHHHHHHHHhhceEEecCCCC
Confidence 111 1233322222 23332 23568999999988 667888888888753
Q ss_pred ----CeEEEEeccchhhhhhh---cccHHHHcccceEEecCCCHHHH----HHHHHHHHHHHHhccC--C-CCCHHHHHH
Q 004878 423 ----ELQCIASTTQDEHRTQF---EKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHHN--C-KFTLEAINA 488 (725)
Q Consensus 423 ----~v~vI~at~~~~~~~~~---~ld~~L~~Rf~~I~i~~Ps~ee~----~~IL~~~~~~~~~~~~--~-~i~~~~l~~ 488 (725)
+|++|++||.+.- +.+ .....|--|+.++.+..|...+| ..+...+++++...++ + .++++++..
T Consensus 377 ~~~vDVRIIAATN~nL~-~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~ 455 (560)
T COG3829 377 PIPVDVRIIAATNRNLE-KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALAL 455 (560)
T ss_pred ceeeEEEEEeccCcCHH-HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 3689999998641 111 12233444777888887765444 4444445555543333 2 378888877
Q ss_pred HHH
Q 004878 489 AVH 491 (725)
Q Consensus 489 l~~ 491 (725)
+.+
T Consensus 456 L~~ 458 (560)
T COG3829 456 LLR 458 (560)
T ss_pred HHh
Confidence 654
No 222
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.96 E-value=6.7e-10 Score=108.29 Aligned_cols=132 Identities=22% Similarity=0.278 Sum_probs=71.6
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh----hhhhccccc
Q 004878 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----GLLMAGAKE 363 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~----~~l~~g~~~ 363 (725)
.|.+|+||+..++.+.-...- ..|+||+||||||||++|+.+...+..-.....+.-..++.+.. ..+.....+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred ChhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 378999999999888766664 56999999999999999999997764221111111111111100 000000000
Q ss_pred cc-hHHHHHHHHHH--------HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-----------
Q 004878 364 RG-ELEARVTTLIS--------EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE----------- 423 (725)
Q Consensus 364 ~g-~~~~~l~~~~~--------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~----------- 423 (725)
+. .-......++. ++......|||+||+..+ ...+.+.|+..++.+.
T Consensus 79 r~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef-------------~~~vld~Lr~ple~g~v~i~R~~~~~~ 145 (206)
T PF01078_consen 79 RAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF-------------DRSVLDALRQPLEDGEVTISRAGGSVT 145 (206)
T ss_dssp EEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS--------------HHHHHHHHHHHHHSBEEEEETTEEEE
T ss_pred ccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc-------------CHHHHHHHHHHHHCCeEEEEECCceEE
Confidence 00 00000111111 122345679999999888 5678899999998664
Q ss_pred ----eEEEEeccchh
Q 004878 424 ----LQCIASTTQDE 434 (725)
Q Consensus 424 ----v~vI~at~~~~ 434 (725)
+.+|+|+|+-+
T Consensus 146 ~Pa~f~lv~a~NPcp 160 (206)
T PF01078_consen 146 YPARFLLVAAMNPCP 160 (206)
T ss_dssp EB--EEEEEEE-S--
T ss_pred EecccEEEEEecccc
Confidence 58899998865
No 223
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=3e-08 Score=104.77 Aligned_cols=149 Identities=16% Similarity=0.179 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcCCCC-CceEEcCCCChHHHHHHHHHHHHHhcCCCc-cc-------------CCCeEEEeehhhhhcc
Q 004878 296 ETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPV-FL-------------LSKRIMSLDMGLLMAG 360 (725)
Q Consensus 296 ~~~i~~l~~~L~~~~~~-~iLL~Gp~G~GKT~la~~la~~l~~~~~p~-~l-------------~~~~l~~ld~~~l~~g 360 (725)
....+.+...+.+.+.. ..||+||+|+||+++|+.+|+.+...+... .. ....++.+... .+
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~ 84 (325)
T PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DN 84 (325)
T ss_pred HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cC
Confidence 34567777777775544 457999999999999999999986532110 00 01123333211 01
Q ss_pred ccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccchh
Q 004878 361 AKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDE 434 (725)
Q Consensus 361 ~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~~ 434 (725)
+.. -.+.++.+.+.+. .++..|++||++|.+ ....+|.|++.||+ ..+.+|.+|+..+
T Consensus 85 -~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-------------~~~AaNaLLKtLEEPp~~~~fiL~t~~~~ 148 (325)
T PRK06871 85 -KDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERL-------------TEAAANALLKTLEEPRPNTYFLLQADLSA 148 (325)
T ss_pred -CCC--CHHHHHHHHHHHhhccccCCceEEEEechhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChH
Confidence 111 1234566555553 245579999999999 55789999999996 4567777777665
Q ss_pred hhhhhcccHHHHcccceEEecCCCHHHHHHHHHH
Q 004878 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (725)
Q Consensus 435 ~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~ 468 (725)
.+.|.+++||+.+.|.+|+.++..+.|..
T Consensus 149 -----~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 149 -----ALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred -----hCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 78899999999999999999998777754
No 224
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=2.2e-09 Score=114.92 Aligned_cols=201 Identities=20% Similarity=0.304 Sum_probs=124.4
Q ss_pred hcCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccc
Q 004878 286 EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~ 363 (725)
...++++||.+...+++++.+.. ....++|++|++||||+.+|+.+.....+. .+..++.+||+.+..+...
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCHHH
Confidence 34567899999999988887766 556789999999999999999999443221 3677889999876532110
Q ss_pred -------cchHHHHH---HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-----------
Q 004878 364 -------RGELEARV---TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (725)
Q Consensus 364 -------~g~~~~~l---~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----------- 422 (725)
.|.|.... ..+|+ ...+.+||+|||+.| ....+..|..+++.+
T Consensus 148 ~eLFG~~kGaftGa~~~k~Glfe---~A~GGtLfLDEI~~L-------------P~~~Q~kLl~~le~g~~~rvG~~~~~ 211 (403)
T COG1221 148 AELFGHEKGAFTGAQGGKAGLFE---QANGGTLFLDEIHRL-------------PPEGQEKLLRVLEEGEYRRVGGSQPR 211 (403)
T ss_pred HHHhccccceeecccCCcCchhe---ecCCCEEehhhhhhC-------------CHhHHHHHHHHHHcCceEecCCCCCc
Confidence 11111111 11222 334679999999999 456677787777753
Q ss_pred --CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHH----HHHHHHHHHHHHHhccCCCC---CHHHHHHHHHHh
Q 004878 423 --ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQED----AVRILLGLREKYEAHHNCKF---TLEAINAAVHLS 493 (725)
Q Consensus 423 --~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee----~~~IL~~~~~~~~~~~~~~i---~~~~l~~l~~~s 493 (725)
.|++|++|+.+.-.....- ..|.+|..++.|..|+..+ +..++..++..+....+..+ +++++..+..+
T Consensus 212 ~~dVRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y- 289 (403)
T COG1221 212 PVDVRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY- 289 (403)
T ss_pred CCCceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC-
Confidence 3688999887642222211 3566666666666665544 44555555655554444443 33445444332
Q ss_pred hhhcccCCCch---hHHHHHHHHHHHH
Q 004878 494 ARYISDRYLPD---KAIDLVDEAGSRA 517 (725)
Q Consensus 494 ~~~i~~r~lp~---~ai~ll~~a~~~~ 517 (725)
.+|+ ...+++..+|..+
T Consensus 290 -------~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 290 -------DWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred -------CCCCcHHHHHHHHHHHHHHh
Confidence 1233 3445566666654
No 225
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.96 E-value=2.7e-09 Score=125.71 Aligned_cols=121 Identities=20% Similarity=0.281 Sum_probs=90.8
Q ss_pred CCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEc
Q 004878 587 DEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666 (725)
Q Consensus 587 ~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~G 666 (725)
+.+.......+..++...+.+||.+.+.+ ...+.+.++.|.+.++|+++++++|...+..... ......| .++|+|
T Consensus 281 ~~~~~~e~~~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~-~~~~~g~--~i~l~G 356 (784)
T PRK10787 281 MSPMSAEATVVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-VNKIKGP--ILCLVG 356 (784)
T ss_pred CCCCCchHHHHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-cccCCCc--eEEEEC
Confidence 34455566778889999999999987764 5688999999999999999999999876653221 1111112 699999
Q ss_pred CCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhH----hHhhcCCCcc
Q 004878 667 PTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTV----SKLIGSPPGY 714 (725)
Q Consensus 667 PpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~v----s~liG~ppgy 714 (725)
|||||||++|+.||+.+ +.++++++++...+...+ ..++|+-||.
T Consensus 357 ppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~ 405 (784)
T PRK10787 357 PPGVGKTSLGQSIAKAT---GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGK 405 (784)
T ss_pred CCCCCHHHHHHHHHHHh---CCCEEEEEcCCCCCHHHhccchhccCCCCCcH
Confidence 99999999999999998 678999999887654222 2345555553
No 226
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.96 E-value=1.2e-09 Score=102.04 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=68.1
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccccc-------chHHHHHHHHHHHHHhcCCeE
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER-------GELEARVTTLISEIQKSGDVI 385 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~-------g~~~~~l~~~~~~~~~~~~~I 385 (725)
++||+||||||||++++.+++.+ +.+++.+.+.......... +..+..-..+...+ ..+.|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeecccccccccccccccc--cceeE
Confidence 58999999999999999999998 5666666654422100000 00000000011111 14689
Q ss_pred EEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC---------------C------CeEEEEeccchhhhhhhcccHH
Q 004878 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------G------ELQCIASTTQDEHRTQFEKDKA 444 (725)
Q Consensus 386 L~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---------------~------~v~vI~at~~~~~~~~~~ld~~ 444 (725)
+||||++.. ..++.+.|.++++. . .+.+|+++|+.. .....++++
T Consensus 69 l~lDEin~a-------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~a 134 (139)
T PF07728_consen 69 LVLDEINRA-------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPA 134 (139)
T ss_dssp EEESSCGG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHH
T ss_pred EEECCcccC-------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHH
Confidence 999999988 34666667666652 1 278999999877 444588999
Q ss_pred HHccc
Q 004878 445 LARRF 449 (725)
Q Consensus 445 L~~Rf 449 (725)
|++||
T Consensus 135 l~~Rf 139 (139)
T PF07728_consen 135 LLDRF 139 (139)
T ss_dssp HHTT-
T ss_pred HHhhC
Confidence 99998
No 227
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.93 E-value=2.4e-09 Score=105.05 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=49.9
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKL 707 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~l 707 (725)
+.++||++.+..+.-.++.++. .+.++.++|||||||||||+||+.||+++ +.+|..+.++.+..+-.+..+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~----r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k~~dl~~i 95 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK----RGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEKAGDLAAI 95 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC----TTS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--SCHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh----cCCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhhHHHHHHH
Confidence 5589999999998777766542 12234599999999999999999999998 778999999876554444443
No 228
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.4e-08 Score=108.12 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCC-Ccc--------------cCCCeEEEeehhhhh---
Q 004878 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV-PVF--------------LLSKRIMSLDMGLLM--- 358 (725)
Q Consensus 297 ~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~-p~~--------------l~~~~l~~ld~~~l~--- 358 (725)
+..+++... ..+-+..+||+||+|+||+++|+.+|+.+..... +.. .....++.+......
T Consensus 8 ~~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~ 86 (342)
T PRK06964 8 DDWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEA 86 (342)
T ss_pred HHHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccc
Confidence 455566654 3345566789999999999999999999865321 100 001122222111100
Q ss_pred --------------cccc---c-cchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHh
Q 004878 359 --------------AGAK---E-RGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416 (725)
Q Consensus 359 --------------~g~~---~-~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~ 416 (725)
.|.+ . ..-..+.++.+.+.+. .++..|++||++|.+ .....|.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLL 153 (342)
T PRK06964 87 PGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-------------NVAAANALL 153 (342)
T ss_pred cccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-------------CHHHHHHHH
Confidence 0000 0 0012344666666553 234669999999999 557889999
Q ss_pred hhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHH
Q 004878 417 PSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (725)
Q Consensus 417 ~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~ 468 (725)
+.|++ ..+++|.+|+..+ .+.|.+++||+.+.|++|+.++..+.|..
T Consensus 154 KtLEEPp~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 154 KTLEEPPPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HHhcCCCcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 99986 4577777777766 78899999999999999999998887743
No 229
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.5e-10 Score=119.97 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=43.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
|+|||||||||||++|+.|.+.| +...+=| +|+||+++| |||.+|.+||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkML-NArePKI-VNGPeIL~K------------YVGeSE~NvR 306 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKML-NAREPKI-VNGPEILNK------------YVGESEENVR 306 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHh-cCCCCcc-cCcHHHHHH------------hhcccHHHHH
Confidence 99999999999999999999998 3334434 899999999 9999999998
No 230
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.91 E-value=5.6e-08 Score=103.11 Aligned_cols=162 Identities=21% Similarity=0.274 Sum_probs=103.7
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEE--------E-eehhh---
Q 004878 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM--------S-LDMGL--- 356 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~--------~-ld~~~--- 356 (725)
|.-++|++.....|..-.-...-.++||-|+.|+||||++++|+..+....+ ..|+++- . -.|..
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~---V~gc~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEV---VIGCPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccce---ecCCCCCCCCCChhhhhHHHHhhcc
Confidence 3457898887776665545566788999999999999999999998743210 0011000 0 00000
Q ss_pred ----h--------hccccccchHHHH------HHHHHHH---------HHhcCCeEEEEccchhhhhCCCCCCCCCCCcH
Q 004878 357 ----L--------MAGAKERGELEAR------VTTLISE---------IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409 (725)
Q Consensus 357 ----l--------~~g~~~~g~~~~~------l~~~~~~---------~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~ 409 (725)
+ +.+ ...+..+.+ +.+.++. +.+.+..||+|||+..| ..
T Consensus 93 e~~~~~~~~r~v~~v~-lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL-------------~d 158 (423)
T COG1239 93 ELEWLPREKRKVPFVA-LPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL-------------DD 158 (423)
T ss_pred ccccccccceecceec-CCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc-------------cH
Confidence 0 000 001111111 1111110 11234579999999999 45
Q ss_pred HHHHHHhhhhcCC---------------CeEEEEeccchhhhhhhcccHHHHccc-ceEEecCC-CHHHHHHHHHHHHH
Q 004878 410 DISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEP-SQEDAVRILLGLRE 471 (725)
Q Consensus 410 ~~~~~L~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~P-s~ee~~~IL~~~~~ 471 (725)
.+++.|+..++.| ++++|+|+|+.+ -++-|.|+.|| ..|.+..| +.+++++|++....
T Consensus 159 ~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe----GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 159 HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE----GELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccc----cccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 6888998888764 368999999985 47889999999 57888887 78889999877554
No 231
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6e-10 Score=110.88 Aligned_cols=76 Identities=32% Similarity=0.533 Sum_probs=60.7
Q ss_pred CceeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 629 KRVIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
..+.|.+.-+..|.+++ -+...|++.|. |++|||+||||||+||||+|+.. ..-|+|+-+||+..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPK----GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGseLiQ 257 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK----GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSELIQ 257 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC----eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHHHHH
Confidence 34666666666666665 56778999886 99999999999999999999996 66799999999987
Q ss_pred hhhHhHhhcCCCccccccccccc
Q 004878 701 RHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 701 k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
| |.|.+-+.||
T Consensus 258 k------------ylGdGpklvR 268 (440)
T KOG0726|consen 258 K------------YLGDGPKLVR 268 (440)
T ss_pred H------------HhccchHHHH
Confidence 7 6666655555
No 232
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.88 E-value=2.1e-08 Score=105.99 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=63.4
Q ss_pred eEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------------eEEEEeccchhhhhh--hcccHHHHcc
Q 004878 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIASTTQDEHRTQ--FEKDKALARR 448 (725)
Q Consensus 384 ~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~at~~~~~~~~--~~ld~~L~~R 448 (725)
.|+-|+|+... ..++++.|+..++.+. .++|+++|..+|... .....+|.+|
T Consensus 238 Gi~~f~Ei~K~-------------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR 304 (361)
T smart00763 238 GILEFVEMFKA-------------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDR 304 (361)
T ss_pred ceEEEeehhcC-------------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhc
Confidence 46666666655 5567777877776433 367899999998754 3557999999
Q ss_pred cceEEecCC-CHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 449 FQPVLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 449 f~~I~i~~P-s~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
|..|.++.| +.++-.+|.+..+..-. ..+..+.+.+++.++.
T Consensus 305 ~~~i~vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~ 347 (361)
T smart00763 305 IIKVKVPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAAL 347 (361)
T ss_pred eEEEeCCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHH
Confidence 999999988 66777788877665211 1234455555544443
No 233
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=3.7e-08 Score=103.89 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhcCCCC-CceEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------CCCeEEEeehhhhhccc
Q 004878 296 ETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-------------LSKRIMSLDMGLLMAGA 361 (725)
Q Consensus 296 ~~~i~~l~~~L~~~~~~-~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l-------------~~~~l~~ld~~~l~~g~ 361 (725)
.+..+++...+.+.+.. .+||+||.|+||+++|+.+|+.+...+.+... ...+++.+.... .+
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~- 85 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EG- 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CC-
Confidence 35667777777665554 47899999999999999999998654321100 011233332110 00
Q ss_pred cccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccchhh
Q 004878 362 KERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEH 435 (725)
Q Consensus 362 ~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~~~ 435 (725)
+.. ..+.++.+.+.+. .++..|++||++|.+ .....|.|++.+|+ ..+.+|..|+..+
T Consensus 86 ~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~- 149 (319)
T PRK06090 86 KSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-------------NESASNALLKTLEEPAPNCLFLLVTHNQK- 149 (319)
T ss_pred CcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChh-
Confidence 111 1233555554443 234679999999999 45789999999996 3467777766665
Q ss_pred hhhhcccHHHHcccceEEecCCCHHHHHHHHH
Q 004878 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (725)
Q Consensus 436 ~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~ 467 (725)
.+-|.+++||+.+.|++|+.++..+.|.
T Consensus 150 ----~lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 150 ----RLLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ----hChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 7889999999999999999998777764
No 234
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.88 E-value=2.6e-09 Score=111.82 Aligned_cols=83 Identities=24% Similarity=0.370 Sum_probs=62.3
Q ss_pred HHHHHhHHHHhcCceeCcHHHHHHHHHHH-------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC--
Q 004878 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE-- 687 (725)
Q Consensus 617 ~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v-------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~-- 687 (725)
...+.++.+.|...++|++++++.|...+ .+.+.|+..+ .|..++||+||||||||++|+++|+.++..+
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-APTLHMSFTGNPGTGKTTVALRMAQILHRLGYV 88 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 34567777888888999999999987653 3345677643 3445899999999999999999999986422
Q ss_pred --CceEEecccCCcc
Q 004878 688 --SSMLRLDMSEYME 700 (725)
Q Consensus 688 --~~lIrid~sE~~~ 700 (725)
.+++.++.+++..
T Consensus 89 ~~~~~v~v~~~~l~~ 103 (284)
T TIGR02880 89 RKGHLVSVTRDDLVG 103 (284)
T ss_pred ccceEEEecHHHHhH
Confidence 3588888766543
No 235
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.88 E-value=9.7e-10 Score=119.83 Aligned_cols=49 Identities=33% Similarity=0.624 Sum_probs=41.4
Q ss_pred HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 646 KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 646 ~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.+.+.|+..|+ ++|||||||||||++|+++|+.+ +..|+++.++++..+
T Consensus 170 ~~~~~Gl~~pk----gvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 170 LYEQIGIDPPR----GVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEFVQK 218 (398)
T ss_pred HHHhcCCCCCc----eEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHHHH
Confidence 34556777664 99999999999999999999997 678999999988665
No 236
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.85 E-value=2.9e-09 Score=110.51 Aligned_cols=69 Identities=28% Similarity=0.472 Sum_probs=50.4
Q ss_pred eeCcHHHHHHHHHHH-------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC----CCceEEecccCCc
Q 004878 631 VIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS----ESSMLRLDMSEYM 699 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v-------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~----~~~lIrid~sE~~ 699 (725)
++|+++++++|...+ .+.+.|+..+..+ .++||+||||||||++|+++|+.++.. ..+++.++.+++.
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQV-LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 789999988886543 3345677766544 389999999999999999999987532 2356666666554
Q ss_pred c
Q 004878 700 E 700 (725)
Q Consensus 700 ~ 700 (725)
.
T Consensus 87 ~ 87 (261)
T TIGR02881 87 G 87 (261)
T ss_pred h
Confidence 3
No 237
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.85 E-value=4.1e-08 Score=114.27 Aligned_cols=208 Identities=15% Similarity=0.157 Sum_probs=123.3
Q ss_pred CcccccHHHHHHHHHHHhcCC---------------------CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCe
Q 004878 290 DPVIGRETEIQRIIQILCRRT---------------------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~~---------------------~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~ 348 (725)
..+.|.+..++.+.-.|.... ..||||+|+||||||.+++.+++...... +..+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~ 526 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKS 526 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCC
Confidence 468899988887766553321 12899999999999999999998643221 111223
Q ss_pred EEEeehhhhhc-cccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-----
Q 004878 349 IMSLDMGLLMA-GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----- 422 (725)
Q Consensus 349 l~~ld~~~l~~-g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----- 422 (725)
...+++..... -....|++...- . .+....+.+++|||++.+ ....+..|..+|+++
T Consensus 527 ~s~vgLTa~~~~~d~~tG~~~le~-G---aLvlAdgGtL~IDEidkm-------------s~~~Q~aLlEaMEqqtIsI~ 589 (915)
T PTZ00111 527 SSSVGLTASIKFNESDNGRAMIQP-G---AVVLANGGVCCIDELDKC-------------HNESRLSLYEVMEQQTVTIA 589 (915)
T ss_pred CccccccchhhhcccccCcccccC-C---cEEEcCCCeEEecchhhC-------------CHHHHHHHHHHHhCCEEEEe
Confidence 33333322211 000112211000 0 011234569999999999 345666777777643
Q ss_pred ----------CeEEEEeccchhhh--------hhhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHHHhcc-----
Q 004878 423 ----------ELQCIASTTQDEHR--------TQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHH----- 477 (725)
Q Consensus 423 ----------~v~vI~at~~~~~~--------~~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~~~~~----- 477 (725)
++.||+++|+...+ +.+.+.++|.+||+ .+.++.|+.+.-..|-..++..+...|
T Consensus 590 KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~ 669 (915)
T PTZ00111 590 KAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSG 669 (915)
T ss_pred cCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhccccccccc
Confidence 46899999986322 35678899999996 456778887766666665554321000
Q ss_pred ------------------------CCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHH
Q 004878 478 ------------------------NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (725)
Q Consensus 478 ------------------------~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~ 518 (725)
...++.+.+...+.++.+++. -.+.+.+.++|.+.....+
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~-P~Ls~eA~~~i~~~Yv~mR 733 (915)
T PTZ00111 670 NDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCF-PKLSDEAKKVITREYVKMR 733 (915)
T ss_pred ccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHh
Confidence 012456667666677765433 2455677777766555444
No 238
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.85 E-value=2.9e-09 Score=116.92 Aligned_cols=73 Identities=36% Similarity=0.595 Sum_probs=54.0
Q ss_pred eCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhh
Q 004878 632 IGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHT 703 (725)
Q Consensus 632 ~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~ 703 (725)
+|+++.++.|...+ .+...|+..|. ++|||||||||||++|+++|+++ ...|++++++++.++
T Consensus 186 gGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~----gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL~~k-- 256 (438)
T PTZ00361 186 GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPK----GVILYGPPGTGKTLLAKAVANET---SATFLRVVGSELIQK-- 256 (438)
T ss_pred cCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCc----EEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchhhhh--
Confidence 45555555555444 23456776664 89999999999999999999998 668999999998765
Q ss_pred HhHhhcCCCccccccccccc
Q 004878 704 VSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 704 vs~liG~ppgyvG~~e~~~~ 723 (725)
|+|.++..+|
T Consensus 257 ----------~~Ge~~~~vr 266 (438)
T PTZ00361 257 ----------YLGDGPKLVR 266 (438)
T ss_pred ----------hcchHHHHHH
Confidence 6666655443
No 239
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.3e-09 Score=107.14 Aligned_cols=82 Identities=38% Similarity=0.675 Sum_probs=66.8
Q ss_pred hHHHHhcCceeCcHHHHHHHHHHH--HHhhcCCCCCCC----CCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 622 GLEEQLKKRVIGQDEAVAAISRAV--KRSRVGLKDPNR----PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 622 ~l~~~L~~~v~Gq~~a~~~i~~~v--~~~~~gl~~p~r----p~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
++-..|.+.|+||++|+.+++-++ +|.|.-+...-| |- ++|..||+|+|||++|+-||+.. +.+||.+--
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PK-NILMIGpTGVGKTEIARRLAkl~---~aPFiKVEA 83 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLA---GAPFIKVEA 83 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCcc-ceEEECCCCCcHHHHHHHHHHHh---CCCeEEEEe
Confidence 445678889999999999998887 344444443322 33 99999999999999999999998 889999999
Q ss_pred cCCcchhhHhHhhcCCCcccccc
Q 004878 696 SEYMERHTVSKLIGSPPGYVGVG 718 (725)
Q Consensus 696 sE~~~k~~vs~liG~ppgyvG~~ 718 (725)
.-|++= ||||-+
T Consensus 84 TKfTEV-----------GYVGrD 95 (444)
T COG1220 84 TKFTEV-----------GYVGRD 95 (444)
T ss_pred eeeeec-----------cccccc
Confidence 999884 899965
No 240
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.84 E-value=2.6e-09 Score=118.80 Aligned_cols=76 Identities=34% Similarity=0.491 Sum_probs=53.7
Q ss_pred eCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC-------CCCceEEeccc
Q 004878 632 IGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG-------SESSMLRLDMS 696 (725)
Q Consensus 632 ~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg-------~~~~lIrid~s 696 (725)
+|+++.++.|...+ .+.+.|+..|+ ++|||||||||||++||++|+++.. ....|+.++++
T Consensus 185 gGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~----GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 185 GGLDSQIEQIRDAVELPFLHPELYREYDLKPPK----GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhccCCCCc----ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 34444444444443 34566777664 8999999999999999999999721 12347788888
Q ss_pred CCcchhhHhHhhcCCCccccccccccc
Q 004878 697 EYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 697 E~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
+++++ |+|..|..+|
T Consensus 261 eLl~k------------yvGete~~ir 275 (512)
T TIGR03689 261 ELLNK------------YVGETERQIR 275 (512)
T ss_pred hhccc------------ccchHHHHHH
Confidence 88776 7777776554
No 241
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.84 E-value=2.8e-09 Score=116.73 Aligned_cols=64 Identities=33% Similarity=0.549 Sum_probs=49.5
Q ss_pred eeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
|+|.++.++.|...+ .+...|+..|. ++|||||||||||++|+++|+.+ +.+|+.++++++..+
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~----gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPK----GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVQK 204 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCC----ceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHhHh
Confidence 455555555555444 23456776664 99999999999999999999997 678999999998765
No 242
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.83 E-value=8.6e-09 Score=92.02 Aligned_cols=66 Identities=30% Similarity=0.538 Sum_probs=58.0
Q ss_pred HHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 004878 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE 687 (725)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~ 687 (725)
+..|++.|...++||.-|++.|..+++.--.. ..|++|+ .+-|.||||||||.+++.||+.+|.++
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 46788899999999999999999999876544 4788897 888999999999999999999999763
No 243
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.82 E-value=8.5e-08 Score=107.39 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=91.5
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeE------------------
Q 004878 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI------------------ 349 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l------------------ 349 (725)
.|++++|++..++.+...+. ...+++|+||||+|||++++.++..+........+....+
T Consensus 190 d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf 267 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPF 267 (499)
T ss_pred CHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCc
Confidence 56789999988777665543 4578999999999999999999876522111000111111
Q ss_pred EEeehh----hhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC---
Q 004878 350 MSLDMG----LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--- 422 (725)
Q Consensus 350 ~~ld~~----~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--- 422 (725)
...++. .++.|.. ..+ -..+....+.+|||||++.+ ..++++.|...|+.+
T Consensus 268 ~~p~~s~s~~~~~ggg~-----~~~----pG~i~lA~~GvLfLDEi~e~-------------~~~~~~~L~~~LE~~~v~ 325 (499)
T TIGR00368 268 RSPHHSASKPALVGGGP-----IPL----PGEISLAHNGVLFLDELPEF-------------KRSVLDALREPIEDGSIS 325 (499)
T ss_pred cccccccchhhhhCCcc-----ccc----hhhhhccCCCeEecCChhhC-------------CHHHHHHHHHHHHcCcEE
Confidence 111100 0000000 000 01122344679999999988 457788888888654
Q ss_pred ------------CeEEEEeccchh---hhh---------------hhcccHHHHcccc-eEEecCCCHHH
Q 004878 423 ------------ELQCIASTTQDE---HRT---------------QFEKDKALARRFQ-PVLISEPSQED 461 (725)
Q Consensus 423 ------------~v~vI~at~~~~---~~~---------------~~~ld~~L~~Rf~-~I~i~~Ps~ee 461 (725)
.+.+|+++|+.+ |.. ...+...|++||+ .+.++.++.++
T Consensus 326 i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 326 ISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred EEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 368899998643 110 1257889999996 67777766553
No 244
>PRK12377 putative replication protein; Provisional
Probab=98.82 E-value=1.7e-08 Score=102.77 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=62.6
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccc---cchHHHHHHHHHHHHHhcCCeEE
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE---RGELEARVTTLISEIQKSGDVIL 386 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~---~g~~~~~l~~~~~~~~~~~~~IL 386 (725)
...+++|+||||||||+|+.++++.+... +..++.++...+...... .+. ....+++.+. ...+|
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~~l~--~~dLL 167 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQELC--KVDLL 167 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHHHHHHHHHHhccc---hHHHHHHHhc--CCCEE
Confidence 34689999999999999999999998653 566777777666531110 111 1123344333 34599
Q ss_pred EEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc---CCCeEEEEeccch
Q 004878 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQD 433 (725)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~at~~~ 433 (725)
+|||++.... .......|..+++ .....+|.|||..
T Consensus 168 iIDDlg~~~~-----------s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 168 VLDEIGIQRE-----------TKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred EEcCCCCCCC-----------CHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9999976621 2223445555554 2345667777754
No 245
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.82 E-value=9e-08 Score=95.63 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-eEEEEeccch--------hhhhhhcccHHHHcccceE
Q 004878 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-LQCIASTTQD--------EHRTQFEKDKALARRFQPV 452 (725)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-v~vI~at~~~--------~~~~~~~ld~~L~~Rf~~I 452 (725)
-|.||||||+|.| ..+.+..|...++..- -++|.++|.. +...-..+.+.|..|+-.|
T Consensus 296 vPGVLFIDEVhML-------------DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Ii 362 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-------------DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLII 362 (456)
T ss_pred cCcceEeeehhhh-------------hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEE
Confidence 3789999999999 6678888888888642 3555555542 1122346778999999889
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhh
Q 004878 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 453 ~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~ 494 (725)
..-+++.++.++|++...+ ..++.++++++..+..+..
T Consensus 363 rt~~y~~~e~r~Ii~~Ra~----~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 363 RTLPYDEEEIRQIIKIRAQ----VEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred eeccCCHHHHHHHHHHHHh----hhcceecHHHHHHHHhhcc
Confidence 9999999999999987766 4578999999999988654
No 246
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.81 E-value=1.2e-07 Score=108.85 Aligned_cols=136 Identities=23% Similarity=0.260 Sum_probs=85.2
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh---hhhccccccchHHHHHHH---HHH--HHHh
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG---LLMAGAKERGELEARVTT---LIS--EIQK 380 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~---~l~~g~~~~g~~~~~l~~---~~~--~~~~ 380 (725)
+.-.++||.|++|+|||+++++++..+.. . ..++.+.+. ..+.|.-. ++..+.. .++ .+..
T Consensus 14 p~~g~vLl~G~~GtgKs~lar~l~~~~~~-~-------~pfv~i~~~~t~d~L~G~id---l~~~~~~g~~~~~~G~L~~ 82 (589)
T TIGR02031 14 PSLGGVAIRARAGTGKTALARALAEILPP-I-------MPFVELPLGVTEDRLIGGID---VEESLAGGQRVTQPGLLDE 82 (589)
T ss_pred CCcceEEEEcCCCcHHHHHHHHHHHhCCc-C-------CCeEecCcccchhhcccchh---hhhhhhcCcccCCCCCeee
Confidence 44678999999999999999999987632 1 123333321 11111100 0000000 000 0112
Q ss_pred cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC---------------eEEEEeccchhhhhhhcccHHH
Q 004878 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE---------------LQCIASTTQDEHRTQFEKDKAL 445 (725)
Q Consensus 381 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~---------------v~vI~at~~~~~~~~~~ld~~L 445 (725)
..+.+||||||+.+ ...+++.|...|+.+. +.+|+++|+.+.. -.+.++|
T Consensus 83 A~~GvL~lDEi~rl-------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~L 147 (589)
T TIGR02031 83 APRGVLYVDMANLL-------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDHL 147 (589)
T ss_pred CCCCcEeccchhhC-------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHHH
Confidence 34569999999999 4567888888887543 6888888876522 2678999
Q ss_pred Hcccc-eEEec-CCCHHHHHHHHHHHH
Q 004878 446 ARRFQ-PVLIS-EPSQEDAVRILLGLR 470 (725)
Q Consensus 446 ~~Rf~-~I~i~-~Ps~ee~~~IL~~~~ 470 (725)
..||. .|.+. .|+.+++.+|++...
T Consensus 148 ldRf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 148 LDRLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred HHhccCeeecCCCCCHHHHHHHHHHHH
Confidence 99995 44554 457778888887754
No 247
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.79 E-value=6.4e-09 Score=96.97 Aligned_cols=129 Identities=22% Similarity=0.341 Sum_probs=81.9
Q ss_pred cccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHH
Q 004878 293 IGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (725)
Q Consensus 293 iG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~ 370 (725)
||....++++.+.+.+ ....+++|+|++||||+++|+.+....... ...++.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~-------~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA-------NGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC-------CS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc-------CCCeEEechhhCc------------
Confidence 5777778887777665 567789999999999999999998865332 2233344444321
Q ss_pred HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc---CCCeEEEEeccchhhh--hhhcccHHH
Q 004878 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQDEHR--TQFEKDKAL 445 (725)
Q Consensus 371 l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~at~~~~~~--~~~~ld~~L 445 (725)
.++++. ..+..|||+|++.| ..+.+..|..++. +.++++|++++.+-.. +.-.+++.|
T Consensus 62 -~~~l~~---a~~gtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L 124 (138)
T PF14532_consen 62 -AELLEQ---AKGGTLYLKNIDRL-------------SPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDL 124 (138)
T ss_dssp -HHHHHH---CTTSEEEEECGCCS--------------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHH
T ss_pred -HHHHHH---cCCCEEEECChHHC-------------CHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHH
Confidence 223333 35679999999999 4456666666665 3568888887765321 223466788
Q ss_pred HcccceEEecCC
Q 004878 446 ARRFQPVLISEP 457 (725)
Q Consensus 446 ~~Rf~~I~i~~P 457 (725)
..||..+.|..|
T Consensus 125 ~~~l~~~~i~lP 136 (138)
T PF14532_consen 125 YYRLSQLEIHLP 136 (138)
T ss_dssp HHHCSTCEEEE-
T ss_pred HHHhCCCEEeCC
Confidence 888865555444
No 248
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.78 E-value=1.7e-08 Score=90.33 Aligned_cols=108 Identities=25% Similarity=0.336 Sum_probs=57.4
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh-hhh----ccccc----cchHHHHHHHHHHHHHhcCC
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG-LLM----AGAKE----RGELEARVTTLISEIQKSGD 383 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~-~l~----~g~~~----~g~~~~~l~~~~~~~~~~~~ 383 (725)
|+||.|+||+|||++|+++|+.+ +..+..+.+. ++. .|... .++++-.-.-++ .
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~ 63 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------T 63 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------S
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------h
Confidence 68999999999999999999988 3333333332 111 11110 011110001111 2
Q ss_pred eEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeEEEEeccchhhhhhhcccHHHHcccc
Q 004878 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIASTTQDEHRTQFEKDKALARRFQ 450 (725)
Q Consensus 384 ~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~at~~~~~~~~~~ld~~L~~Rf~ 450 (725)
.|+++|||++. ....++.|+..++.+ .+.||+|.|+.++...+.+..++.+||-
T Consensus 64 ~ill~DEiNra-------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 64 NILLADEINRA-------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SEEEEETGGGS--------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ceeeecccccC-------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 38999999988 445778888877643 3578999999888888899999999983
No 249
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.8e-09 Score=102.93 Aligned_cols=74 Identities=30% Similarity=0.574 Sum_probs=55.7
Q ss_pred eeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
|+|.++-++.+.+++ ++...|++.|+ |+|+|||||||||++|+|-|... +.-|+.+-+|.+...
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK----GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQLVQM- 244 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK----GVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM- 244 (424)
T ss_pred cccHHHHHHHHHHHhccccccHHHHHhcCCCCCC----ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHHHhh-
Confidence 445555444444443 66778888885 99999999999999999999986 778999999977554
Q ss_pred hHhHhhcCCCccccccccccc
Q 004878 703 TVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 703 ~vs~liG~ppgyvG~~e~~~~ 723 (725)
|+|-+-+.||
T Consensus 245 -----------fIGdGAkLVR 254 (424)
T KOG0652|consen 245 -----------FIGDGAKLVR 254 (424)
T ss_pred -----------hhcchHHHHH
Confidence 5566666665
No 250
>PRK08181 transposase; Validated
Probab=98.76 E-value=3.4e-08 Score=101.90 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=73.1
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeEE
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVIL 386 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~IL 386 (725)
...|++|+||+|||||+|+.+++..+... +..++++++..++..- ...+. +...+..+.. ..+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~~a~~~~~----~~~~l~~l~~--~dLL 171 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQVARRELQ----LESAIAKLDK--FDLL 171 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHHHHHhCCc----HHHHHHHHhc--CCEE
Confidence 56789999999999999999999988652 6777787776665311 11112 2233333332 4599
Q ss_pred EEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccch--hhhhhhc---ccHHHHccc----ceEEecCC
Q 004878 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD--EHRTQFE---KDKALARRF----QPVLISEP 457 (725)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~--~~~~~~~---ld~~L~~Rf----~~I~i~~P 457 (725)
+|||++.+.... .....+.+++....+++ .+|.++|.+ +|...+. +..++.+|+ +.|.+.-.
T Consensus 172 IIDDlg~~~~~~-------~~~~~Lf~lin~R~~~~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~ 242 (269)
T PRK08181 172 ILDDLAYVTKDQ-------AETSVLFELISARYERR--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVE 242 (269)
T ss_pred EEeccccccCCH-------HHHHHHHHHHHHHHhCC--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCc
Confidence 999998873211 11223444444444443 456666544 3433321 223455555 25555554
Q ss_pred C
Q 004878 458 S 458 (725)
Q Consensus 458 s 458 (725)
|
T Consensus 243 s 243 (269)
T PRK08181 243 S 243 (269)
T ss_pred c
Confidence 4
No 251
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=7.6e-09 Score=104.31 Aligned_cols=96 Identities=27% Similarity=0.378 Sum_probs=70.0
Q ss_pred hhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHH
Q 004878 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682 (725)
Q Consensus 603 ~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~ 682 (725)
.++.-...+++.+..+++...-..|.+.|. -.|.++-.+.+.|++.|. ++++|||||+|||.+|+++|..
T Consensus 120 ~m~~e~~~~~s~~~~ggl~~qirelre~ie------lpl~np~lf~rvgIk~Pk----g~ll~GppGtGKTlla~~Vaa~ 189 (388)
T KOG0651|consen 120 NMSHEDPRNISFENVGGLFYQIRELREVIE------LPLTNPELFLRVGIKPPK----GLLLYGPPGTGKTLLARAVAAT 189 (388)
T ss_pred HhhhcCccccCHHHhCChHHHHHHHHhheE------eeccCchhccccCCCCCc----eeEEeCCCCCchhHHHHHHHHh
Confidence 333344455666666666555555554332 234455567788888885 9999999999999999999999
Q ss_pred hcCCCCceEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 683 YFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 683 lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
| +.||+.+-.|++.+| |.|++-..+|
T Consensus 190 m---g~nfl~v~ss~lv~k------------yiGEsaRlIR 215 (388)
T KOG0651|consen 190 M---GVNFLKVVSSALVDK------------YIGESARLIR 215 (388)
T ss_pred c---CCceEEeeHhhhhhh------------hcccHHHHHH
Confidence 9 889999999999887 7777655554
No 252
>PRK08116 hypothetical protein; Validated
Probab=98.73 E-value=1.8e-07 Score=97.10 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=72.9
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc--ccchHHHHHHHHHHHHHhcCCeEEEEc
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK--ERGELEARVTTLISEIQKSGDVILFID 389 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~--~~g~~~~~l~~~~~~~~~~~~~IL~ID 389 (725)
.+++|+|++|+|||+|+.++++.+... +..++.++...+..... +.+........+++.+.. ..+|+||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEe
Confidence 359999999999999999999998653 56777888766542110 000001112233443333 3499999
Q ss_pred cchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHccc----ceEEecCCCH
Q 004878 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF----QPVLISEPSQ 459 (725)
Q Consensus 390 Eid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf----~~I~i~~Ps~ 459 (725)
|++..-.+. .....+.+++.....++ ..+|.|||...-.=...++..+.+|+ ..|.+.-++.
T Consensus 186 Dlg~e~~t~-------~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 186 DLGAERDTE-------WAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred cccCCCCCH-------HHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 996531110 01122334444333333 45666666543110012467788885 3566766653
No 253
>PRK06526 transposase; Provisional
Probab=98.73 E-value=4.2e-08 Score=100.74 Aligned_cols=73 Identities=33% Similarity=0.491 Sum_probs=48.0
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeE
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVI 385 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~I 385 (725)
..+.|++|+||||||||+++.+++..+... +..++...+..++... ...+.... .+..+ ....+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~~~l~~~l~~~~~~~~~~~----~l~~l--~~~dl 162 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATAAQWVARLAAAHHAGRLQA----ELVKL--GRYPL 162 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhHHHHHHHHHHHHhcCcHHH----HHHHh--ccCCE
Confidence 456789999999999999999999988653 5556665555443211 11222222 22222 23569
Q ss_pred EEEccchhh
Q 004878 386 LFIDEVHTL 394 (725)
Q Consensus 386 L~IDEid~l 394 (725)
|+|||++.+
T Consensus 163 LIIDD~g~~ 171 (254)
T PRK06526 163 LIVDEVGYI 171 (254)
T ss_pred EEEcccccC
Confidence 999999987
No 254
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.71 E-value=7.4e-08 Score=108.21 Aligned_cols=185 Identities=22% Similarity=0.300 Sum_probs=114.9
Q ss_pred CCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc----
Q 004878 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---- 361 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~---- 361 (725)
.+..++|....++++.+.+.. ....+++|+|++|+||+++|+.+...... .+.+++.+||..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPENLLESE 209 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCChHHHHHH
Confidence 455688888888877776654 45678999999999999999999876532 24567888887652100
Q ss_pred ---cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeE
Q 004878 362 ---KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (725)
Q Consensus 362 ---~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 425 (725)
...|.+..........+....+.+||||||+.| ..+++..|..+++.+ .++
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (445)
T TIGR02915 210 LFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-------------PLNLQAKLLRFLQERVIERLGGREEIPVDVR 276 (445)
T ss_pred hcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC-------------CHHHHHHHHHHHhhCeEEeCCCCceeeeceE
Confidence 000000000000001112244678999999999 456777777777643 468
Q ss_pred EEEeccchhhh--hhhcccHHHHcccceEEecCCCHHHHHH----HHHHHHHHHHhccC---CCCCHHHHHHHHHH
Q 004878 426 CIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (725)
Q Consensus 426 vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~----IL~~~~~~~~~~~~---~~i~~~~l~~l~~~ 492 (725)
+|++++.+... ..-...+.|..|+..+.|..|+..+|.+ +++.++.++...++ ..+++++++.+..+
T Consensus 277 ii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (445)
T TIGR02915 277 IVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH 352 (445)
T ss_pred EEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC
Confidence 88888765311 1123556677788767777776555544 45555555543333 46888888877653
No 255
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=1.6e-07 Score=99.96 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCC-----Cc----------ccCCCeEEEeehhhh--h
Q 004878 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV-----PV----------FLLSKRIMSLDMGLL--M 358 (725)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~-----p~----------~l~~~~l~~ld~~~l--~ 358 (725)
++..+++... ..+-+..+||+||+|+|||++|+.+|+.+..... |- ......++.++...- .
T Consensus 7 ~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~ 85 (325)
T PRK08699 7 QEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPE 85 (325)
T ss_pred HHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccc
Confidence 3455555554 2344456889999999999999999999864211 10 001123444432110 0
Q ss_pred ccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccc
Q 004878 359 AGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQ 432 (725)
Q Consensus 359 ~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~ 432 (725)
.|.....--.+.++.+.+.+.. ++..|++||+++.+ ....++.|+..++.. ...+|.+|..
T Consensus 86 ~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~L-------------d~~a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 86 NGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESM-------------NLQAANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred ccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhC-------------CHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 0100000113446666666643 34568899999999 456778888888753 4556666666
Q ss_pred hhhhhhhcccHHHHcccceEEecCCCHHHHHHHHH
Q 004878 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (725)
Q Consensus 433 ~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~ 467 (725)
.+ .+.+.+.+||+.+.|++|+.++....|.
T Consensus 153 ~~-----~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 153 AD-----KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred hH-----hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 54 6778999999999999999998777764
No 256
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.70 E-value=1.7e-07 Score=107.39 Aligned_cols=123 Identities=21% Similarity=0.269 Sum_probs=81.4
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-----------------------CeEEEEeccchhhhhh
Q 004878 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCIASTTQDEHRTQ 438 (725)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~at~~~~~~~~ 438 (725)
.+.+|||||++.| ....+..|+..|+.+ ++.+|++++.+. .
T Consensus 226 nGGtL~LDei~~L-------------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l---l 289 (637)
T PRK13765 226 HKGVLFIDEINTL-------------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA---L 289 (637)
T ss_pred CCcEEEEeChHhC-------------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH---H
Confidence 3567888888887 345677777777533 347888888864 2
Q ss_pred hcccHHHHcccc----eEEecC--C-CHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhhhhcccCC---C-chhH
Q 004878 439 FEKDKALARRFQ----PVLISE--P-SQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDRY---L-PDKA 506 (725)
Q Consensus 439 ~~ld~~L~~Rf~----~I~i~~--P-s~ee~~~IL~~~~~~~~~~-~~~~i~~~~l~~l~~~s~~~i~~r~---l-p~~a 506 (725)
..++|.|..||. .+.+.. + +.+.+..+++.+.+..... .-..++.+++..+++.+.|....+. + ..+.
T Consensus 290 ~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l 369 (637)
T PRK13765 290 ENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDL 369 (637)
T ss_pred HhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHH
Confidence 356899999985 244442 1 3555666665555544333 2347999999999999888776654 2 3466
Q ss_pred HHHHHHHHHHHHHh
Q 004878 507 IDLVDEAGSRAHIE 520 (725)
Q Consensus 507 i~ll~~a~~~~~~~ 520 (725)
.+++.+|...++..
T Consensus 370 ~~l~r~a~~~a~~~ 383 (637)
T PRK13765 370 GGLVRVAGDIARSE 383 (637)
T ss_pred HHHHHHHHHHHHhh
Confidence 77888877666544
No 257
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.8e-06 Score=92.29 Aligned_cols=206 Identities=18% Similarity=0.177 Sum_probs=122.9
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc------
Q 004878 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~------ 359 (725)
..++||+.+...+.+++.. .....+.+.|-||+|||.+...+...... ......+++++|..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-----~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-----SSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-----hcccceeEEEeeccccchHHHHH
Confidence 4679999999988887654 67788999999999999999877766533 22234556777754321
Q ss_pred --------cccccchHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHH-hhhhcCCCeEEEEe
Q 004878 360 --------GAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL-KPSLGRGELQCIAS 429 (725)
Q Consensus 360 --------g~~~~g~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L-~~~l~~~~v~vI~a 429 (725)
+....+........+-...... ...++++||+|.|...+.. .+..++ .+.+-..++++||.
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~---------vLy~lFewp~lp~sr~iLiGi 295 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT---------VLYTLFEWPKLPNSRIILIGI 295 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc---------eeeeehhcccCCcceeeeeee
Confidence 0111111111122222222222 4789999999999732211 112121 24444677889998
Q ss_pred ccchhhhhhhcccHHHHccc----ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchh
Q 004878 430 TTQDEHRTQFEKDKALARRF----QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~Rf----~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
.|.-+... ..-|.|..|+ +.+.|++++.+|..+||+..+.... ...+-+.+++.+++......++- .+
T Consensus 296 ANslDlTd--R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~---t~~~~~~Aie~~ArKvaa~SGDl---Rk 367 (529)
T KOG2227|consen 296 ANSLDLTD--RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES---TSIFLNAAIELCARKVAAPSGDL---RK 367 (529)
T ss_pred hhhhhHHH--HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc---ccccchHHHHHHHHHhccCchhH---HH
Confidence 88876333 3345565554 3789999999999999988766332 22334445655555444332211 25
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
|.+++..|+..+
T Consensus 368 aLdv~R~aiEI~ 379 (529)
T KOG2227|consen 368 ALDVCRRAIEIA 379 (529)
T ss_pred HHHHHHHHHHHH
Confidence 566655555433
No 258
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.68 E-value=1.6e-08 Score=114.78 Aligned_cols=49 Identities=35% Similarity=0.558 Sum_probs=40.5
Q ss_pred HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 646 KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 646 ~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.+...|...| .++|||||||||||++|++||.++ +.+|+.++.+++.++
T Consensus 79 ~~~~~g~~~~----~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 79 KFTKLGAKIP----KGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM 127 (495)
T ss_pred HHHhcCCCCC----CcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHH
Confidence 3444565544 389999999999999999999997 778999999988765
No 259
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.68 E-value=2.2e-07 Score=105.12 Aligned_cols=183 Identities=22% Similarity=0.314 Sum_probs=113.4
Q ss_pred CCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-----
Q 004878 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA----- 361 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~----- 361 (725)
+.+++|....++.+.+.+.+ ....+++|+|++|||||++|+++...... .+.+++.+||..+....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~~~~~~~~~l 209 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAIPKDLIESEL 209 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCCCHHHHHHHh
Confidence 45789988888877776654 45667999999999999999999886532 25677888886652100
Q ss_pred --cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------------eEE
Q 004878 362 --KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQC 426 (725)
Q Consensus 362 --~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-------------v~v 426 (725)
...|.+...............+..|||||++.| ..+.+..|..+++.+. +++
T Consensus 210 fg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 210 FGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-------------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred cCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC-------------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 000000000000000011234568999999999 4567777877776543 478
Q ss_pred EEeccchhhh--hhhcccHHHHcccceEEecCCCH----HHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHH
Q 004878 427 IASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVH 491 (725)
Q Consensus 427 I~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~----ee~~~IL~~~~~~~~~~~~---~~i~~~~l~~l~~ 491 (725)
|++++.+-.. +.-...+.|..||..+.|..|.. ++...++..+++++...++ ..+++++++.+..
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 8888765311 11235577888887666766654 4555556666655544332 2578888877755
No 260
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.68 E-value=1.8e-07 Score=86.33 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=73.6
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc------------ccccchHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG------------AKERGELEARVTTLISEI 378 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g------------~~~~g~~~~~l~~~~~~~ 378 (725)
+.+++|+||||+|||++++.++..+.... ..++.+++...... ......-...+..++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999884321 24566655443211 111123334456667777
Q ss_pred HhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHH------HHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccc-e
Q 004878 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN------LLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ-P 451 (725)
Q Consensus 379 ~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~------~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~-~ 451 (725)
+...+.+++|||++.+.... ...... ............+|++++.. .......+..|+. .
T Consensus 75 ~~~~~~viiiDei~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~ 141 (148)
T smart00382 75 RKLKPDVLILDEITSLLDAE---------QEALLLLLEELRLLLLLKSEKNLTVILTTNDE----KDLGPALLRRRFDRR 141 (148)
T ss_pred HhcCCCEEEEECCcccCCHH---------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCC----ccCchhhhhhccceE
Confidence 76666899999999994321 001000 12233345667888888851 1133445555663 4
Q ss_pred EEec
Q 004878 452 VLIS 455 (725)
Q Consensus 452 I~i~ 455 (725)
+.+.
T Consensus 142 ~~~~ 145 (148)
T smart00382 142 IVLL 145 (148)
T ss_pred EEec
Confidence 4443
No 261
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.4e-08 Score=113.54 Aligned_cols=74 Identities=39% Similarity=0.582 Sum_probs=60.9
Q ss_pred eeCcHHHHHHHHHHH-------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhh
Q 004878 631 VIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHT 703 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v-------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~ 703 (725)
|.|.|++++.+.+.+ ++.+.|-+-|+ |+||+||||||||+||||+|.+. +-+|..+.+|+|.+-
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPk----GvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem-- 222 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPK----GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM-- 222 (596)
T ss_pred hcCcHHHHHHHHHHHHHHhCchhhHhccccccc----ceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh--
Confidence 555666666665555 55566666664 99999999999999999999997 889999999999998
Q ss_pred HhHhhcCCCccccccccccc
Q 004878 704 VSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 704 vs~liG~ppgyvG~~e~~~~ 723 (725)
|||.+-..||
T Consensus 223 ----------fVGvGAsRVR 232 (596)
T COG0465 223 ----------FVGVGASRVR 232 (596)
T ss_pred ----------hcCCCcHHHH
Confidence 8998888877
No 262
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.67 E-value=1e-06 Score=88.58 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=73.4
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-eEEEEeccch-------hhhhhhcccHHHHcccceEEe
Q 004878 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-LQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (725)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-v~vI~at~~~-------~~~~~~~ld~~L~~Rf~~I~i 454 (725)
|.||||||+|.| ..+.+.+|...++..- -++|.+||.. .|..-..+.-.|..|.-.|..
T Consensus 289 pGVLFIDEvHML-------------DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t 355 (454)
T KOG2680|consen 289 PGVLFIDEVHML-------------DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIIST 355 (454)
T ss_pred cceEEEeeehhh-------------hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeec
Confidence 789999999999 5677888888887542 2344444432 233445677889999988999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhh
Q 004878 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 455 ~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~ 494 (725)
.+++.++..+||+..++ ..++.+.+++++.+.....
T Consensus 356 ~py~~~d~~~IL~iRc~----EEdv~m~~~A~d~Lt~i~~ 391 (454)
T KOG2680|consen 356 QPYTEEDIKKILRIRCQ----EEDVEMNPDALDLLTKIGE 391 (454)
T ss_pred ccCcHHHHHHHHHhhhh----hhccccCHHHHHHHHHhhh
Confidence 99999999999998887 4578899999998887654
No 263
>PF13173 AAA_14: AAA domain
Probab=98.67 E-value=8.7e-08 Score=88.06 Aligned_cols=123 Identities=23% Similarity=0.305 Sum_probs=77.2
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccc
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEi 391 (725)
..++|+||.||||||+++.+++.+. ...+++.+++......... ... +...+.+....++.+|||||+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~i~iDEi 70 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRLA--DPD--LLEYFLELIKPGKKYIFIDEI 70 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHHh--hhh--hHHHHHHhhccCCcEEEEehh
Confidence 4578999999999999999998873 1456677776654421100 000 222222222235789999999
Q ss_pred hhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHH
Q 004878 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQED 461 (725)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee 461 (725)
+.+ . +....++.+...+ .+.+|.|++...... ......+..|...+.+.+++..|
T Consensus 71 q~~-----------~---~~~~~lk~l~d~~~~~~ii~tgS~~~~l~-~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 71 QYL-----------P---DWEDALKFLVDNGPNIKIILTGSSSSLLS-KDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhh-----------c---cHHHHHHHHHHhccCceEEEEccchHHHh-hcccccCCCeEEEEEECCCCHHH
Confidence 998 1 3455566666554 566666655543111 13445677788889999988776
No 264
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.65 E-value=3.5e-08 Score=75.45 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHh
Q 004878 96 SQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWH 146 (725)
Q Consensus 96 A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~ 146 (725)
|+++|++++|.+|++||||++|+.++++ .++|+.+|+|++.+++++.+.++
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 7899999999999999999999998876 88999999999999999988764
No 265
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.64 E-value=8.8e-09 Score=112.26 Aligned_cols=65 Identities=34% Similarity=0.559 Sum_probs=50.0
Q ss_pred ceeCcHHHHHHHHHHHHH--------hhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~--------~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|+++.++.|...+.. ...|+..|. ++|||||||||||++|+++|+.+ ...|+++..+++..+
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~----gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPK----GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVRK 195 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCc----eEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHHHH
Confidence 467777777777665532 344665553 89999999999999999999998 667999998877554
No 266
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.64 E-value=1.6e-07 Score=95.57 Aligned_cols=88 Identities=18% Similarity=0.326 Sum_probs=55.1
Q ss_pred HHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccccc-chHHHHHHHH
Q 004878 298 EIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER-GELEARVTTL 374 (725)
Q Consensus 298 ~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~-g~~~~~l~~~ 374 (725)
.+..+.+.... ....+++|+|++|||||+|+.+++..+... +..++.+++..+....... .........+
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~l~~~l~~~~~~~~~~~~~~ 156 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVADIMSAMKDTFSNSETSEEQL 156 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHHHHHHHHHHHhhccccHHHH
Confidence 44444444433 123579999999999999999999998653 6778888877765311100 0000112234
Q ss_pred HHHHHhcCCeEEEEccchhh
Q 004878 375 ISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 375 ~~~~~~~~~~IL~IDEid~l 394 (725)
++.+. ...+|+|||++..
T Consensus 157 l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 157 LNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred HHHhc--cCCEEEEeCCCCC
Confidence 44443 3459999999876
No 267
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.63 E-value=5.2e-07 Score=101.35 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=126.1
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCC-----CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEE
Q 004878 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRT-----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~-----~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ 351 (725)
..+|.++++|.+++++.-..+-++.+..+|.... ..-+||+||+||||||+++.||+++. ..+.+
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----------~~v~E 75 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----------FEVQE 75 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----------CeeEE
Confidence 3578999999999999999999999888887621 23367899999999999999999983 22222
Q ss_pred ee-hhh----------hhccccccchHHHH---HHHH-HHHHH-----------hcCCeEEEEccchhhhhCCCCCCCCC
Q 004878 352 LD-MGL----------LMAGAKERGELEAR---VTTL-ISEIQ-----------KSGDVILFIDEVHTLIGSGTVGRGNK 405 (725)
Q Consensus 352 ld-~~~----------l~~g~~~~g~~~~~---l~~~-~~~~~-----------~~~~~IL~IDEid~l~~~~~~~~~~~ 405 (725)
.. ... .........++..+ +..+ +...+ .....||+|||+-.++..
T Consensus 76 w~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-------- 147 (519)
T PF03215_consen 76 WINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-------- 147 (519)
T ss_pred ecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------
Confidence 11 000 00000000001111 1111 11111 124679999999877532
Q ss_pred CCcHHHHHHHhhhhcCCC---eEEEEecc--c---hhhhh-----hhcccHHHHc--ccceEEecCCCHHHHHHHHHHHH
Q 004878 406 GTGLDISNLLKPSLGRGE---LQCIASTT--Q---DEHRT-----QFEKDKALAR--RFQPVLISEPSQEDAVRILLGLR 470 (725)
Q Consensus 406 ~~~~~~~~~L~~~l~~~~---v~vI~at~--~---~~~~~-----~~~ld~~L~~--Rf~~I~i~~Ps~ee~~~IL~~~~ 470 (725)
+ ...+.+.|+.++..+. +++|.+-+ . ..+.. ..-+.+.+.. ++..|.|.+-...-..+.|+.++
T Consensus 148 ~-~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~ 226 (519)
T PF03215_consen 148 D-TSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRIL 226 (519)
T ss_pred h-HHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHH
Confidence 2 2567788888887543 44444411 0 01100 0124456665 44689999999988888888887
Q ss_pred HHHHh-ccC-CCC--CHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q 004878 471 EKYEA-HHN-CKF--TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 471 ~~~~~-~~~-~~i--~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~ 515 (725)
..... ..+ ... ..+.++.++..+.+.+. .||.-|.-.|.
T Consensus 227 ~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIR------sAIn~LQf~~~ 269 (519)
T PF03215_consen 227 KKEARSSSGKNKVPDKQSVLDSIAESSNGDIR------SAINNLQFWCL 269 (519)
T ss_pred HHHhhhhcCCccCCChHHHHHHHHHhcCchHH------HHHHHHHHHhc
Confidence 75421 111 122 24458888887766553 55655555544
No 268
>PRK09183 transposase/IS protein; Provisional
Probab=98.61 E-value=1.7e-07 Score=96.79 Aligned_cols=106 Identities=23% Similarity=0.310 Sum_probs=62.9
Q ss_pred CChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCC
Q 004878 267 RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS 346 (725)
Q Consensus 267 ~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~ 346 (725)
.|...+++.|.++...... ...+..|...-......+++|+||+|||||+|+.+++..+.. .+
T Consensus 68 ~p~~~~l~~fd~~~~~~~~----------~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G 130 (259)
T PRK09183 68 FPAVKTFEEYDFTFATGAP----------QKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVR-------AG 130 (259)
T ss_pred CCCCCcHhhcccccCCCCC----------HHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cC
Confidence 3344667767666432211 123444433222355788999999999999999999987643 26
Q ss_pred CeEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeEEEEccchhh
Q 004878 347 KRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 347 ~~l~~ld~~~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l 394 (725)
..+..+++..+.... ...+. +..++... ...+.+|+|||++.+
T Consensus 131 ~~v~~~~~~~l~~~l~~a~~~~~----~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 131 IKVRFTTAADLLLQLSTAQRQGR----YKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeHHHHHHHHHHHHHCCc----HHHHHHHH-hcCCCEEEEcccccC
Confidence 677777766554211 11111 22333322 124569999999876
No 269
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.7e-08 Score=105.06 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=38.3
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.|.|++||+...+.+.-... .+.|+||+||||||||.+++.+...+
T Consensus 177 D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred chhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccC
Confidence 57799999999888765543 47789999999999999999886554
No 270
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.5e-07 Score=107.64 Aligned_cols=122 Identities=25% Similarity=0.379 Sum_probs=94.0
Q ss_pred CcccccHHHHHHHHHHHhcC--------CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc--
Q 004878 290 DPVIGRETEIQRIIQILCRR--------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-- 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~--------~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-- 359 (725)
+.|+||++.+..+.+++.+. ....++|.||.|||||-+|++||..+.. ....++.+|++++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg-------se~~~IriDmse~~evs 634 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG-------SEENFIRLDMSEFQEVS 634 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC-------CccceEEechhhhhhhh
Confidence 36899999999999988762 2234689999999999999999999844 367788999986321
Q ss_pred ---c--ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-----------
Q 004878 360 ---G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE----------- 423 (725)
Q Consensus 360 ---g--~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~----------- 423 (725)
| ..|+|..+ ...+.+.+++.+.+|++||||+.. ..++++.|++++++|+
T Consensus 635 kligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-------------h~~v~n~llq~lD~GrltDs~Gr~Vd~ 699 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-------------HPDVLNILLQLLDRGRLTDSHGREVDF 699 (898)
T ss_pred hccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-------------CHHHHHHHHHHHhcCccccCCCcEeec
Confidence 2 23455322 346667778889999999999987 6789999999998754
Q ss_pred --eEEEEeccch
Q 004878 424 --LQCIASTTQD 433 (725)
Q Consensus 424 --v~vI~at~~~ 433 (725)
++||.|+|..
T Consensus 700 kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 700 KNAIFIMTSNVG 711 (898)
T ss_pred cceEEEEecccc
Confidence 4788877764
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.3e-07 Score=97.27 Aligned_cols=103 Identities=21% Similarity=0.274 Sum_probs=67.5
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeEE
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVIL 386 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~IL 386 (725)
.+.|++|+|+||||||+|+-+++.++.. .+.+++.+...+++..- ...|..+..+... +.. .-+|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~-------~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~~--~dlL 171 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK-------AGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LKK--VDLL 171 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hhc--CCEE
Confidence 7889999999999999999999999964 37888888887776321 1123344433332 222 3499
Q ss_pred EEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccch
Q 004878 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433 (725)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~ 433 (725)
+|||+....... .....+..++....++... |.++|.+
T Consensus 172 IiDDlG~~~~~~-------~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 172 IIDDIGYEPFSQ-------EEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred EEecccCccCCH-------HHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 999998872110 1123445556666666666 5565554
No 272
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=9.7e-07 Score=91.41 Aligned_cols=138 Identities=18% Similarity=0.120 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc------cCCCeEEEeehhhhhccccccchHHH
Q 004878 297 TEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------LLSKRIMSLDMGLLMAGAKERGELEA 369 (725)
Q Consensus 297 ~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~------l~~~~l~~ld~~~l~~g~~~~g~~~~ 369 (725)
..++.|...+...+..| .||+||.|+||+++|..+|+.+...+.+.. ....+++.+... +.. ..--.+
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~----~~~-~~I~id 78 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ----GKG-RLHSIE 78 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC----CCC-CcCcHH
Confidence 45677788877755554 569999999999999999999865322210 011222222110 000 000123
Q ss_pred HHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccchhhhhhhcccH
Q 004878 370 RVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDK 443 (725)
Q Consensus 370 ~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~~~~~~~~ld~ 443 (725)
.++.+.+.+.. ++..|++||++|.+ ..+++|.|++.+|.. .+++|..|+..+ .+.|
T Consensus 79 qiR~l~~~~~~~p~e~~~kv~ii~~ad~m-------------t~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~ 140 (290)
T PRK05917 79 TPRAIKKQIWIHPYESPYKIYIIHEADRM-------------TLDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPP 140 (290)
T ss_pred HHHHHHHHHhhCccCCCceEEEEechhhc-------------CHHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcH
Confidence 45666665543 34569999999999 567899999999963 466676666665 7889
Q ss_pred HHHcccceEEecCC
Q 004878 444 ALARRFQPVLISEP 457 (725)
Q Consensus 444 ~L~~Rf~~I~i~~P 457 (725)
.+++||+.+.|+++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 99999999999875
No 273
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.58 E-value=1.1e-07 Score=103.16 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=63.3
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh-c
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI-G 709 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li-G 709 (725)
+++.++.++.+...+... ..++|+||||||||++|+.||..+.+ +..+.++++-++...++...+| |
T Consensus 177 ~~i~e~~le~l~~~L~~~-----------~~iil~GppGtGKT~lA~~la~~l~~-~~~~~~v~~VtFHpsySYeDFI~G 244 (459)
T PRK11331 177 LFIPETTIETILKRLTIK-----------KNIILQGPPGVGKTFVARRLAYLLTG-EKAPQRVNMVQFHQSYSYEDFIQG 244 (459)
T ss_pred ccCCHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhcC-CcccceeeEEeecccccHHHHhcc
Confidence 566666667766655532 28999999999999999999999865 4567889999999999999999 8
Q ss_pred CCCccccccc
Q 004878 710 SPPGYVGVGE 719 (725)
Q Consensus 710 ~ppgyvG~~e 719 (725)
.+|+++||.-
T Consensus 245 ~rP~~vgy~~ 254 (459)
T PRK11331 245 YRPNGVGFRR 254 (459)
T ss_pred cCCCCCCeEe
Confidence 8999999864
No 274
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.1e-08 Score=107.70 Aligned_cols=85 Identities=33% Similarity=0.500 Sum_probs=64.1
Q ss_pred hccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHH--hhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q 004878 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKR--SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES 688 (725)
Q Consensus 611 ~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~--~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~ 688 (725)
.+.|++..++...++.+.+.|++. +.+ .-.|+..| ..++||.||||+|||+|++|||.+. ..
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p----------~lr~d~F~glr~p---~rglLLfGPpgtGKtmL~~aiAsE~---~a 212 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILP----------LLRPDLFLGLREP---VRGLLLFGPPGTGKTMLAKAIATES---GA 212 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhc----------ccchHhhhccccc---cchhheecCCCCchHHHHHHHHhhh---cc
Confidence 456666666666666665555433 111 12244444 3499999999999999999999997 77
Q ss_pred ceEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 689 SMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 689 ~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
.|..|.-|.+.+| |||.+|+.||
T Consensus 213 tff~iSassLtsK------------~~Ge~eK~vr 235 (428)
T KOG0740|consen 213 TFFNISASSLTSK------------YVGESEKLVR 235 (428)
T ss_pred eEeeccHHHhhhh------------ccChHHHHHH
Confidence 8999999999999 9999999988
No 275
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.56 E-value=3e-07 Score=84.56 Aligned_cols=109 Identities=19% Similarity=0.279 Sum_probs=68.7
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc------------cc--cccchHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------------GA--KERGELEARVTTLI 375 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~------------g~--~~~g~~~~~l~~~~ 375 (725)
....++++||+|+|||++++.+++.+........ ...++.+++..... +. .........+..+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4567899999999999999999998753100000 45566766544320 01 11123444455566
Q ss_pred HHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccc
Q 004878 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432 (725)
Q Consensus 376 ~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~ 432 (725)
+.+......+|+|||+|.+. .....+.|+.+.+...+.+|.+.++
T Consensus 81 ~~l~~~~~~~lviDe~~~l~------------~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF------------SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH------------THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcC------------CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 66666655699999999983 2467788888888888888777666
No 276
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.56 E-value=3.3e-07 Score=95.15 Aligned_cols=148 Identities=17% Similarity=0.274 Sum_probs=89.4
Q ss_pred HHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHH---
Q 004878 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI--- 378 (725)
Q Consensus 302 l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~--- 378 (725)
+++.+.. .+.++||+||+|||||++++.+...+... ..-+..+.++.... ...++.+++..
T Consensus 25 ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k 88 (272)
T PF12775_consen 25 LLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTT--------SNQLQKIIESKLEK 88 (272)
T ss_dssp HHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHH--------HHHHHHCCCTTECE
T ss_pred HHHHHHH-cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCC--------HHHHHHHHhhcEEc
Confidence 4444443 46789999999999999999877654211 11233444433221 11122222211
Q ss_pred --------HhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--------------CeEEEEeccchhhh
Q 004878 379 --------QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------------ELQCIASTTQDEHR 436 (725)
Q Consensus 379 --------~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~at~~~~~~ 436 (725)
..++..|+||||++.-.... -+.....++|+++++.+ ++.+|+++++..
T Consensus 89 ~~~~~~gP~~~k~lv~fiDDlN~p~~d~-------ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~-- 159 (272)
T PF12775_consen 89 RRGRVYGPPGGKKLVLFIDDLNMPQPDK-------YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG-- 159 (272)
T ss_dssp CTTEEEEEESSSEEEEEEETTT-S---T-------TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--
T ss_pred CCCCCCCCCCCcEEEEEecccCCCCCCC-------CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--
Confidence 01245799999998764321 34555678888888742 357888888753
Q ss_pred hhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHH
Q 004878 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474 (725)
Q Consensus 437 ~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~ 474 (725)
....+++.|.|.|..+.++.|+.+....|+..++..+.
T Consensus 160 Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 160 GRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp T--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHT
T ss_pred CCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhc
Confidence 23467899999999999999999999999999887664
No 277
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.55 E-value=1.3e-07 Score=91.92 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc---ccccchHHHHHHHH
Q 004878 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG---AKERGELEARVTTL 374 (725)
Q Consensus 298 ~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g---~~~~g~~~~~l~~~ 374 (725)
.+..+...-....+.|++|+|++|+|||+||.+++.++... +..+..++...++.. ....+..+ ..
T Consensus 34 ~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~~~~~~~~----~~ 102 (178)
T PF01695_consen 34 QIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFITASDLLDELKQSRSDGSYE----EL 102 (178)
T ss_dssp HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEHHHHHHHHHCCHCCTTHC----HH
T ss_pred HHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEeecCceeccccccccccchh----hh
Confidence 34444333333567899999999999999999999988653 778888888777532 11222222 33
Q ss_pred HHHHHhcCCeEEEEccchhh
Q 004878 375 ISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 375 ~~~~~~~~~~IL~IDEid~l 394 (725)
++.+.. ..+|+|||+...
T Consensus 103 ~~~l~~--~dlLilDDlG~~ 120 (178)
T PF01695_consen 103 LKRLKR--VDLLILDDLGYE 120 (178)
T ss_dssp HHHHHT--SSCEEEETCTSS
T ss_pred cCcccc--ccEeccccccee
Confidence 344443 349999999754
No 278
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.54 E-value=8.9e-08 Score=96.92 Aligned_cols=59 Identities=32% Similarity=0.481 Sum_probs=47.4
Q ss_pred cHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 613 ~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
+|.+.-+-..+.+ +.||+.++..+..++.+ +.+ | .+|||||||||||+.|++.|+++|+
T Consensus 25 swteKYrPkt~de-----~~gQe~vV~~L~~a~~~-~~l---p-----~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 25 SWTEKYRPKTFDE-----LAGQEHVVQVLKNALLR-RIL---P-----HYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHhCCCcHHh-----hcchHHHHHHHHHHHhh-cCC---c-----eEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 4554444444444 88999999999999987 321 2 8999999999999999999999998
No 279
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.51 E-value=5.3e-07 Score=101.71 Aligned_cols=183 Identities=16% Similarity=0.225 Sum_probs=110.2
Q ss_pred CCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-----
Q 004878 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA----- 361 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~----- 361 (725)
+..++|....+..+.+.+.. ....++++.|++|+||+++|+.+...... .+.+++.+||..+....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~~~i~c~~~~~~~~~~~l 214 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNCAALPESLLESEL 214 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC-------CCCCeEEEECCCCCHHHHHHHh
Confidence 34678888777777766544 45578999999999999999999875422 25677888887653100
Q ss_pred --cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeEE
Q 004878 362 --KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQC 426 (725)
Q Consensus 362 --~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 426 (725)
...+.+...............+.+||||||+.| ..+.+..|..+++.+ .+++
T Consensus 215 fg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 281 (457)
T PRK11361 215 FGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM-------------PLVLQAKLLRILQEREFERIGGHQTIKVDIRI 281 (457)
T ss_pred cCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEE
Confidence 000000000000000111234568999999999 445677777777643 2688
Q ss_pred EEeccchhhh--hhhcccHHHHcccceEEecCCCHHHHHH----HHHHHHHHHHhccC---CCCCHHHHHHHHH
Q 004878 427 IASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHN---CKFTLEAINAAVH 491 (725)
Q Consensus 427 I~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~----IL~~~~~~~~~~~~---~~i~~~~l~~l~~ 491 (725)
|++++.+... ..-...+.+..|+..+.|..|+..+|.+ ++..++.++....+ ..+++++++.+..
T Consensus 282 i~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 355 (457)
T PRK11361 282 IAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTA 355 (457)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHc
Confidence 9988865311 1113456677778767777776555544 44444554433222 4688888877654
No 280
>CHL00176 ftsH cell division protein; Validated
Probab=98.50 E-value=9.6e-08 Score=109.95 Aligned_cols=64 Identities=36% Similarity=0.549 Sum_probs=46.8
Q ss_pred eeCcHHHHHHHHHHH-------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 631 VIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v-------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
|+|.+++++.+...+ .+...|...| .++||+||||||||++|++||.++ +.+|+.++++++.+.
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p----~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~ 255 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIP----KGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEM 255 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCC----ceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHH
Confidence 445555554444433 3333455444 389999999999999999999997 678999999998764
No 281
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.50 E-value=2.9e-07 Score=92.27 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=50.5
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
..+||+++++.+.-.++.++.- +...-++|||||||.|||+||..||++| +.|+-.-.+|-+
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~r----~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~l 88 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKKR----GEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPAL 88 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHhc----CCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccc
Confidence 3789999999999999887642 2233499999999999999999999999 667666666644
No 282
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.50 E-value=1.8e-07 Score=71.52 Aligned_cols=52 Identities=42% Similarity=0.677 Sum_probs=47.4
Q ss_pred HHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 182 AVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 182 A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
|..+|+++|+.+|+++|||+||++++++.+.++|+++|+|.+.+++++...+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~l 52 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999999999887654
No 283
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.48 E-value=1.2e-06 Score=93.13 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=70.5
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc---ccchHHHHHHHHHHHHHhcCCeEE
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK---ERGELEARVTTLISEIQKSGDVIL 386 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~---~~g~~~~~l~~~~~~~~~~~~~IL 386 (725)
...+++|+|++|+|||+|+.++|+++... +..++.++...+..... ..... .....++.+... .+|
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~~~--DLL 250 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLINC--DLL 250 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhccC--CEE
Confidence 34889999999999999999999998653 67888888776643110 00000 011113333333 499
Q ss_pred EEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccch--hhhhhhcccHHHHccc
Q 004878 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD--EHRTQFEKDKALARRF 449 (725)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~--~~~~~~~ld~~L~~Rf 449 (725)
+|||++....+. .....+.+++.....++. .+|.|||.. ++.. .+++.+.+|+
T Consensus 251 IIDDlG~e~~t~-------~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~--~~~eri~SRL 305 (329)
T PRK06835 251 IIDDLGTEKITE-------FSKSELFNLINKRLLRQK-KMIISTNLSLEELLK--TYSERISSRL 305 (329)
T ss_pred EEeccCCCCCCH-------HHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHH--HHhHHHHHHH
Confidence 999998773221 112345555555555544 455555543 3322 2456777776
No 284
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.47 E-value=2.8e-07 Score=94.90 Aligned_cols=68 Identities=31% Similarity=0.433 Sum_probs=55.4
Q ss_pred cCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
..-++||.+|-++-.-.++.-+.|-..- .++|+.||||||||.||-+||++| |.+-+|+.+.+||+-.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aG----rgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~isgsEiYS 105 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAG----RGILIVGPPGTGKTALAMGIAREL-GEDVPFVAISGSEIYS 105 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccc----cEEEEECCCCCcHHHHHHHHHHHh-CCCCCceeeccceeee
Confidence 3458999999988766665555542221 199999999999999999999998 9899999999999853
No 285
>PRK15115 response regulator GlrR; Provisional
Probab=98.46 E-value=5.9e-07 Score=100.93 Aligned_cols=182 Identities=19% Similarity=0.275 Sum_probs=109.1
Q ss_pred cccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-------
Q 004878 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA------- 361 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~------- 361 (725)
.++|....+.++.+.... ....+++|+|++|+|||++|+.+...... .+..++.+||..+....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCHHHHHHHhcC
Confidence 467777777666654433 44567999999999999999999886532 25677888887642100
Q ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeEEEE
Q 004878 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIA 428 (725)
Q Consensus 362 ~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~ 428 (725)
...|.+...............+.+||||||+.| ..+.+..|..+++.+ .+++|+
T Consensus 208 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~ 274 (444)
T PRK15115 208 HARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-------------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIIS 274 (444)
T ss_pred CCcCCCCCCccCCCCcEEECCCCEEEEEccccC-------------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEE
Confidence 000000000000000011234569999999999 456777777777653 358888
Q ss_pred eccchhhh--hhhcccHHHHcccceEEecCCCHHHHHH----HHHHHHHHHHhccC---CCCCHHHHHHHHHH
Q 004878 429 STTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (725)
Q Consensus 429 at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~----IL~~~~~~~~~~~~---~~i~~~~l~~l~~~ 492 (725)
+|+.+... ..-.+.+.|..|+..+.|..|+..+|.+ +++.++.++...++ ..+++++++.+..+
T Consensus 275 ~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (444)
T PRK15115 275 ATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 (444)
T ss_pred eCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 88764211 1113446677778777788787666654 34444554433222 25899998888754
No 286
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.46 E-value=5.2e-06 Score=90.27 Aligned_cols=199 Identities=12% Similarity=0.129 Sum_probs=114.8
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHh-----c-CCCC-CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEE
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILC-----R-RTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~-----~-~~~~-~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~ 350 (725)
-.|.++++|.+.+++-=+..-+..+.++|. . ..+. -+||+||+||||||.++.|++++ +..++
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----------g~~~~ 139 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----------GYQLI 139 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----------Cceee
Confidence 468999999999999888888888888887 2 2223 35788999999999999999998 44443
Q ss_pred Eeeh-------hhhh-----ccccccchHHHHHHHHHHHHH------------hcCCeEEEEccchhhhhCCCCCCCCCC
Q 004878 351 SLDM-------GLLM-----AGAKERGELEARVTTLISEIQ------------KSGDVILFIDEVHTLIGSGTVGRGNKG 406 (725)
Q Consensus 351 ~ld~-------~~l~-----~g~~~~g~~~~~l~~~~~~~~------------~~~~~IL~IDEid~l~~~~~~~~~~~~ 406 (725)
+..- ..+. .+..+..+ -..++..+..+. ...+.+|+|||+-..+.. +
T Consensus 140 Ew~Npi~~~~~~~~h~~t~~~~~~~~s~-L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~--------d 210 (634)
T KOG1970|consen 140 EWSNPINLKEPENLHNETSFLMFPYQSQ-LAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR--------D 210 (634)
T ss_pred eecCCccccccccccccchhcccchhhH-HHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh--------h
Confidence 3220 0000 00011111 111222222221 123568999999888643 1
Q ss_pred CcHHHHHHHhhhhcCCCeEEEEe-cc------chhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhc-cC
Q 004878 407 TGLDISNLLKPSLGRGELQCIAS-TT------QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH-HN 478 (725)
Q Consensus 407 ~~~~~~~~L~~~l~~~~v~vI~a-t~------~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~-~~ 478 (725)
....+.+.|..+...+.+.+|.. |. ...|+. +..+-...-|...|.|.+-...-..+.|+.++...... .+
T Consensus 211 ~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rl-f~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~ 289 (634)
T KOG1970|consen 211 DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRL-FPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSG 289 (634)
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhh-chhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccC
Confidence 23456677777777666543332 21 122222 22233344477789999988888888888777654221 11
Q ss_pred CCCC-HHHHHHHHHHhhhh
Q 004878 479 CKFT-LEAINAAVHLSARY 496 (725)
Q Consensus 479 ~~i~-~~~l~~l~~~s~~~ 496 (725)
+.+. ...++.++..+.+.
T Consensus 290 ~k~~~~~~v~~i~~~s~GD 308 (634)
T KOG1970|consen 290 IKVPDTAEVELICQGSGGD 308 (634)
T ss_pred CcCchhHHHHHHHHhcCcc
Confidence 2222 23344555555443
No 287
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.44 E-value=4.3e-07 Score=101.33 Aligned_cols=149 Identities=21% Similarity=0.285 Sum_probs=91.2
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe---------------
Q 004878 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL--------------- 352 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l--------------- 352 (725)
.|.+++|+...++.+.-. -..+.+++|+||+|+|||++++.++..+........+....++.+
T Consensus 189 d~~~v~Gq~~~~~al~la--a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPf 266 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT--AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPF 266 (506)
T ss_pred CeEEEECcHHHHhhhhee--ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCc
Confidence 566788988877765422 245678999999999999999999876532111101111111110
Q ss_pred -------ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC--
Q 004878 353 -------DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-- 423 (725)
Q Consensus 353 -------d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-- 423 (725)
....++.|... .+ -..+....+.+|||||++.+ ...+++.|++.|+.+.
T Consensus 267 r~ph~~~s~~~l~GGg~~-------~~--pG~l~~A~gGvLfLDEi~e~-------------~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 267 RSPHHSASLTAMVGGGAI-------PG--PGEISLAHNGVLFLDELPEF-------------ERRTLDALREPIESGQIH 324 (506)
T ss_pred cCCCccchHHHHhCCCce-------eh--hhHhhhccCCEEecCCchhC-------------CHHHHHHHHHHHHcCcEE
Confidence 01111111100 00 01233345679999999887 4567888888776543
Q ss_pred -------------eEEEEeccchhhhhh----------------hcccHHHHcccc-eEEecCCCHH
Q 004878 424 -------------LQCIASTTQDEHRTQ----------------FEKDKALARRFQ-PVLISEPSQE 460 (725)
Q Consensus 424 -------------v~vI~at~~~~~~~~----------------~~ld~~L~~Rf~-~I~i~~Ps~e 460 (725)
+.+|+++|+.+..-+ -.+..++.+||. .+.++.|+.+
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 588999998751110 246789999996 6888888765
No 288
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.43 E-value=6.4e-07 Score=101.22 Aligned_cols=183 Identities=22% Similarity=0.316 Sum_probs=111.4
Q ss_pred CcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc------
Q 004878 290 DPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA------ 361 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~------ 361 (725)
..++|....+..+.+.+.. ....++++.|++||||+++++++...... .+..++.+||..+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHHhc
Confidence 3577877777766665543 44567899999999999999999876532 25677888876652100
Q ss_pred -cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeEEE
Q 004878 362 -KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (725)
Q Consensus 362 -~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI 427 (725)
...|.+...............+..||||||+.| ..+.+..|..+++.+ .+++|
T Consensus 207 g~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-------------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii 273 (463)
T TIGR01818 207 GHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-------------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIV 273 (463)
T ss_pred CCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-------------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEE
Confidence 001111100000001112234678999999999 445677777777654 35788
Q ss_pred Eeccchhh--hhhhcccHHHHcccceEEecCCC----HHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHH
Q 004878 428 ASTTQDEH--RTQFEKDKALARRFQPVLISEPS----QEDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (725)
Q Consensus 428 ~at~~~~~--~~~~~ld~~L~~Rf~~I~i~~Ps----~ee~~~IL~~~~~~~~~~~~---~~i~~~~l~~l~~~ 492 (725)
++++.+.- ...-...+.|..|+..+.|..|+ .++...++..++.++...++ ..+++++++.+..+
T Consensus 274 ~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 274 AATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred EeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 88876531 11123446777788655555554 45666666666666544443 46899998887664
No 289
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.42 E-value=8.6e-06 Score=91.03 Aligned_cols=218 Identities=21% Similarity=0.264 Sum_probs=127.6
Q ss_pred hHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhc-----CCCCCceEEcCCCChHHHHHHHHHHHHH----hcCCCc
Q 004878 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIV----QAEVPV 342 (725)
Q Consensus 272 ~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~Gp~G~GKT~la~~la~~l~----~~~~p~ 342 (725)
.|+.+...|.-...| +-+.+|+.+...+...+.. ..+..+.+.|-||||||+.++.+.+.+. ++.+|.
T Consensus 381 ~l~~ara~Lhls~vp---~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~ 457 (767)
T KOG1514|consen 381 ELSKARARLHLSAVP---ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPK 457 (767)
T ss_pred HHHHHHHHhHHhhcc---ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCC
Confidence 344444444333333 4578899999888876654 2334678999999999999999998775 345554
Q ss_pred ccCCCeEEEeehhhhh-------------ccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCC
Q 004878 343 FLLSKRIMSLDMGLLM-------------AGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNK 405 (725)
Q Consensus 343 ~l~~~~l~~ld~~~l~-------------~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~ 405 (725)
| ..+++|.-.+. .|.+. .+...+..+-.... ...++||+|||+|.|+..
T Consensus 458 f----~yveINgm~l~~~~~~Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr-------- 523 (767)
T KOG1514|consen 458 F----DYVEINGLRLASPREIYEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR-------- 523 (767)
T ss_pred c----cEEEEcceeecCHHHHHHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc--------
Confidence 3 33444432221 11111 12222222211111 235789999999999742
Q ss_pred CCcHHH-HHHHh-hhhcCCCeEEEEeccchhhhhhhcccHHHHccc--ceEEecCCCHHHHHHHHHHHHHHHHhccCCCC
Q 004878 406 GTGLDI-SNLLK-PSLGRGELQCIASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (725)
Q Consensus 406 ~~~~~~-~~~L~-~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf--~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i 481 (725)
.+++ +|++. +.+.+.+++||+..|..+.-.. .+.....+|+ +.|.|.+++-+|+.+|+...+... ..+
T Consensus 524 --~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr-~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f 595 (767)
T KOG1514|consen 524 --SQDVLYNIFDWPTLKNSKLVVIAIANTMDLPER-LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAF 595 (767)
T ss_pred --cHHHHHHHhcCCcCCCCceEEEEecccccCHHH-HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhc
Confidence 3343 44443 4556788888888776542111 2233444565 689999999999999998766533 245
Q ss_pred CHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 482 ~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
..++++.+++.....-++ ..++.++++.|...+
T Consensus 596 ~~~aielvarkVAavSGD---aRraldic~RA~Eia 628 (767)
T KOG1514|consen 596 ENKAIELVARKVAAVSGD---ARRALDICRRAAEIA 628 (767)
T ss_pred chhHHHHHHHHHHhcccc---HHHHHHHHHHHHHHh
Confidence 667766665543322211 124556655555433
No 290
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.42 E-value=4.8e-07 Score=95.91 Aligned_cols=65 Identities=25% Similarity=0.404 Sum_probs=54.9
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCC-------ceEEecc----cCC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES-------SMLRLDM----SEY 698 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~-------~lIrid~----sE~ 698 (725)
.++|++++++.+...++....|+..+++ .++|+||||||||++|++||+.+ +. .+..+.+ |..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~---il~L~GPPGsGKStla~~La~~l---~~ys~t~eG~~Y~~~~~~~~sp~ 125 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQ---ILYLLGPVGGGKSSLVECLKRGL---EEYSKTPEGRRYTFKWNGEESPM 125 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCc---EEEEECCCCCCHHHHHHHHHHHH---hhhcccccCceEEEEecCCCCCC
Confidence 5999999999999998888777765443 68999999999999999999998 44 7888988 665
Q ss_pred cc
Q 004878 699 ME 700 (725)
Q Consensus 699 ~~ 700 (725)
.|
T Consensus 126 ~e 127 (361)
T smart00763 126 HE 127 (361)
T ss_pred cc
Confidence 54
No 291
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.42 E-value=3e-06 Score=86.99 Aligned_cols=163 Identities=20% Similarity=0.276 Sum_probs=103.0
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh--------
Q 004878 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL-------- 357 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l-------- 357 (725)
-.++|..++-..+.+++.+ +..+.++++||.|+|||.++........+. +-+++.+.+...
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~-------~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQEN-------GENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhc-------CCeEEEEEECccchhhHHHH
Confidence 3577877777777776665 778999999999999999987554442111 222222222111
Q ss_pred -----------hccccccchHHHHHHHHHHHHHhc-----CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-
Q 004878 358 -----------MAGAKERGELEARVTTLISEIQKS-----GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG- 420 (725)
Q Consensus 358 -----------~~g~~~~g~~~~~l~~~~~~~~~~-----~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~- 420 (725)
..+.+..|.+.+.+..+++.++.. .++|+++||+|.+++-. ...-+.|++. ..+
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~--------rQtllYnlfD-isqs 167 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS--------RQTLLYNLFD-ISQS 167 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch--------hhHHHHHHHH-HHhh
Confidence 123445567777788888777643 35677788999986421 1222344432 222
Q ss_pred -CCCeEEEEeccchhhhhhhcccHHHHccc-c-eEEecCC-CHHHHHHHHHHHH
Q 004878 421 -RGELQCIASTTQDEHRTQFEKDKALARRF-Q-PVLISEP-SQEDAVRILLGLR 470 (725)
Q Consensus 421 -~~~v~vI~at~~~~~~~~~~ld~~L~~Rf-~-~I~i~~P-s~ee~~~IL~~~~ 470 (725)
+..+.+||.|+.-+..+. +...+.+|| + +|.+.++ +.++...+++.+.
T Consensus 168 ~r~Piciig~Ttrld~lE~--LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILEL--LEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHH--HHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 567888888887664443 457889999 3 5666655 6778778777765
No 292
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.41 E-value=1.1e-07 Score=87.55 Aligned_cols=37 Identities=38% Similarity=0.632 Sum_probs=33.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 662 iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+||+||||||||++|+.+|+.+ +.+++.+|++++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS 37 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc
Confidence 6899999999999999999998 678999999988744
No 293
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.40 E-value=5.9e-07 Score=94.20 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=52.1
Q ss_pred cCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
...++||.+|-++..-.+..-+.|.-.- .++||.||||||||.||-+||++| |.+-+|+.+.+||+..
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aG----r~iLiaGppGtGKTAlA~~ia~eL-G~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAG----RAILIAGPPGTGKTALAMAIAKEL-GEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-----EEEEEE-TTSSHHHHHHHHHHHC-TTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHHHhcccccC----cEEEEeCCCCCCchHHHHHHHHHh-CCCCCeeEcccceeee
Confidence 3468999999998877776665443221 199999999999999999999997 8899999999999864
No 294
>PRK04195 replication factor C large subunit; Provisional
Probab=98.39 E-value=5.4e-07 Score=101.87 Aligned_cols=73 Identities=29% Similarity=0.485 Sum_probs=60.6
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ 710 (725)
++|+++++..+...+.....|.. ...+||+||||||||++|++||+.+ +..++.++.|++..+..+.++++.
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~-----~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~i~~ 87 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKP-----KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERVAGE 87 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCC-----CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHHHHH
Confidence 88999999999888876553322 2389999999999999999999998 567999999998887777777765
Q ss_pred C
Q 004878 711 P 711 (725)
Q Consensus 711 p 711 (725)
-
T Consensus 88 ~ 88 (482)
T PRK04195 88 A 88 (482)
T ss_pred h
Confidence 3
No 295
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4e-07 Score=95.85 Aligned_cols=47 Identities=36% Similarity=0.547 Sum_probs=42.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
+++||.||+|+|||.||+.||+.+ +.+|.-.|.--++. .||||.+=.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVE 273 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVE 273 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHH
Confidence 589999999999999999999999 88999999988876 499998743
No 296
>PF05729 NACHT: NACHT domain
Probab=98.37 E-value=8e-06 Score=78.08 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=81.6
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHH-----------HHH-HHHHHHhc
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR-----------VTT-LISEIQKS 381 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~-----------l~~-~~~~~~~~ 381 (725)
++|+|++|+|||++++.++..+.....+... ...++.+.+......... ..+... +.. +...+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 6899999999999999999988765432211 122334444333211100 011111 111 11222345
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC---CCeEEEEeccchhhhhhhcccHHHHccc---ceEEec
Q 004878 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHRTQFEKDKALARRF---QPVLIS 455 (725)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~at~~~~~~~~~~ld~~L~~Rf---~~I~i~ 455 (725)
+..+|+||.+|.+...... .........|..++.. ..+.+|.++++..+. .+.+.+ ..+.+.
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~-------~~~~~~~~~~~~~l~ 148 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP-------DLRRRLKQAQILELE 148 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH-------HHHHhcCCCcEEEEC
Confidence 7889999999999542211 0122344455555543 456677766665421 133333 468999
Q ss_pred CCCHHHHHHHHHHHHH
Q 004878 456 EPSQEDAVRILLGLRE 471 (725)
Q Consensus 456 ~Ps~ee~~~IL~~~~~ 471 (725)
+.+.++..++++...+
T Consensus 149 ~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 149 PFSEEDIKQYLRKYFS 164 (166)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999988876553
No 297
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=5.8e-06 Score=85.96 Aligned_cols=145 Identities=13% Similarity=0.156 Sum_probs=95.8
Q ss_pred ccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------cCCCeEEEeehhhhh
Q 004878 294 GRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--------------LLSKRIMSLDMGLLM 358 (725)
Q Consensus 294 G~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~--------------l~~~~l~~ld~~~l~ 358 (725)
.+...++.+...+.+.+..| .||+|| +||+++|+.+|+.+...+.... ....+++.+...
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~--- 80 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ--- 80 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC---
Confidence 35667788888888766555 588996 7899999999998865331100 001122222111
Q ss_pred ccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccc
Q 004878 359 AGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQ 432 (725)
Q Consensus 359 ~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~ 432 (725)
|. . --.+.++.+.+.+.. ++..|++||++|.+ .....|.|++.++.. .+++|.+|+.
T Consensus 81 -~~-~--I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-------------~~~AaNaLLKtLEEPp~~t~~iL~t~~ 143 (290)
T PRK07276 81 -GQ-V--IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-------------HVNAANSLLKVIEEPQSEIYIFLLTND 143 (290)
T ss_pred -CC-c--CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 10 0 012446666665543 34579999999999 557899999999864 3667776666
Q ss_pred hhhhhhhcccHHHHcccceEEecCCCHHHHHHHH
Q 004878 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466 (725)
Q Consensus 433 ~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL 466 (725)
.+ .+-|.+++||+.|.|+. +.++..+++
T Consensus 144 ~~-----~lLpTI~SRcq~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 144 EN-----KVLPTIKSRTQIFHFPK-NEAYLIQLL 171 (290)
T ss_pred hh-----hCchHHHHcceeeeCCC-cHHHHHHHH
Confidence 65 78899999999999965 556555554
No 298
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.36 E-value=8.1e-07 Score=86.87 Aligned_cols=48 Identities=38% Similarity=0.590 Sum_probs=34.0
Q ss_pred cccccHHHHHHHHHHHhc---CCCCCceEEcCCCChHHHHHHHHHHHHHhc
Q 004878 291 PVIGRETEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~---~~~~~iLL~Gp~G~GKT~la~~la~~l~~~ 338 (725)
+++||+++++++...+.. ..+++++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999999999999932 445778999999999999999999888653
No 299
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.35 E-value=7.1e-07 Score=98.89 Aligned_cols=79 Identities=24% Similarity=0.382 Sum_probs=62.3
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG 709 (725)
.++|+++++++|...++.+..|+..+++ .++|+||||+|||+||+.||+.| ..-++..+++.++ .|-+..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~---IL~LvGPpG~GKSsLa~~la~~l--e~~~~Y~~kg~~~-----~sP~~e 146 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQ---ILYLLGPVGGGKSSLAERLKSLM--ERVPIYVLKANGE-----RSPVNE 146 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCc---eEEEecCCCCCchHHHHHHHHHH--HhCcceeecCCCC-----CCCCCC
Confidence 4899999999999999888888876542 78999999999999999999998 3446777777432 234666
Q ss_pred CCCcccccc
Q 004878 710 SPPGYVGVG 718 (725)
Q Consensus 710 ~ppgyvG~~ 718 (725)
.|.+++...
T Consensus 147 ~PL~L~p~~ 155 (644)
T PRK15455 147 SPLGLFDPD 155 (644)
T ss_pred CCCCCCChh
Confidence 777777644
No 300
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.35 E-value=5.1e-06 Score=87.49 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh------------cc
Q 004878 295 RETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------------AG 360 (725)
Q Consensus 295 ~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~------------~g 360 (725)
||.++++|.+.|.. .....+.|+|++|+|||+||..+++....... ...++++++.... .+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~-----f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNR-----FDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCC-----CTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccc-----ccccccccccccccccccccccccccc
Confidence 67899999999988 45556789999999999999999977431110 1123444432211 00
Q ss_pred cc-----ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc--CCCeEEEEeccch
Q 004878 361 AK-----ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQD 433 (725)
Q Consensus 361 ~~-----~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~at~~~ 433 (725)
.. ...+.+.....+.+ .-...+++|++||++... .+. .+...+. .....+|.||...
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~~--------------~~~-~l~~~~~~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRE-LLKDKRCLLVLDDVWDEE--------------DLE-ELREPLPSFSSGSKILVTTRDR 139 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHH-HHCCTSEEEEEEEE-SHH--------------HH--------HCHHSS-EEEEEESCG
T ss_pred ccccccccccccccccccchh-hhccccceeeeeeecccc--------------ccc-cccccccccccccccccccccc
Confidence 11 12233443333333 334458999999997662 111 1222221 2235666666554
Q ss_pred hhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 434 ~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
. +-..+......+.++..+.++..+++......... ......++..+.+++.+.+.
T Consensus 140 ~------v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 140 S------VAGSLGGTDKVIELEPLSEEEALELFKKRAGRKES-ESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp G------GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-
T ss_pred c------ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence 3 11112222457999999999999998876542210 01122234556777777654
No 301
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1e-05 Score=84.81 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcC---CCcccCCCeEEEeehhhhhccccccchHHHHHH
Q 004878 297 TEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAE---VPVFLLSKRIMSLDMGLLMAGAKERGELEARVT 372 (725)
Q Consensus 297 ~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~---~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~ 372 (725)
..++.+...+......|+ ||+|+.|+||+.+++.+++.+.... +........+..+|.. |. .. -.+.++
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~-~i--~vd~Ir 75 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DK-DL--SKSEFL 75 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CC-cC--CHHHHH
Confidence 345667777776556665 5999999999999999999984321 1100001122233311 11 00 113355
Q ss_pred HHHHHHH-----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccchhhhhhhcccHHH
Q 004878 373 TLISEIQ-----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKAL 445 (725)
Q Consensus 373 ~~~~~~~-----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~~~~~~~~ld~~L 445 (725)
.+.+.+. .++.-|++||+++.+ ...++|.|+..++.. .+.+|..|+..+ .+-+.+
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m-------------~~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI 137 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKT-------------SNSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTI 137 (299)
T ss_pred HHHHHhccCCcccCCceEEEEeccccc-------------CHHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHH
Confidence 5555542 135679999999888 456788999999863 456666555443 677899
Q ss_pred HcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhh
Q 004878 446 ARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 446 ~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~ 494 (725)
++||+.+.+.+|+.++....|... .++++....++.+++
T Consensus 138 ~SRc~~~~f~~l~~~~l~~~l~~~----------~~~~~~a~~~a~~~~ 176 (299)
T PRK07132 138 VSRCQVFNVKEPDQQKILAKLLSK----------NKEKEYNWFYAYIFS 176 (299)
T ss_pred HhCeEEEECCCCCHHHHHHHHHHc----------CCChhHHHHHHHHcC
Confidence 999999999999999877666421 245555555555544
No 302
>PRK06921 hypothetical protein; Provisional
Probab=98.34 E-value=1.8e-06 Score=89.55 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=66.1
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~ID 389 (725)
..++++|+|++|+|||+|+.+++..+... .+..++++....++... ...+ ..+...++.+. ...+|+||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~------~g~~v~y~~~~~l~~~l--~~~~-~~~~~~~~~~~--~~dlLiID 184 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK------KGVPVLYFPFVEGFGDL--KDDF-DLLEAKLNRMK--KVEVLFID 184 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh------cCceEEEEEHHHHHHHH--HHHH-HHHHHHHHHhc--CCCEEEEe
Confidence 46789999999999999999999998542 15667777765543211 0011 11222333333 24599999
Q ss_pred cchh-hhhCCCCCCCCCCCc-HHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHccc
Q 004878 390 EVHT-LIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF 449 (725)
Q Consensus 390 Eid~-l~~~~~~~~~~~~~~-~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf 449 (725)
|++. +.+.... .+.. ..+.+++.....++.- +|.++|... ..+..+++.+.+|+
T Consensus 185 Dl~~~~~g~e~~----t~~~~~~lf~iin~R~~~~k~-tIitsn~~~-~el~~~~~~l~sRi 240 (266)
T PRK06921 185 DLFKPVNGKPRA----TEWQIEQMYSVLNYRYLNHKP-ILISSELTI-DELLDIDEALGSRI 240 (266)
T ss_pred ccccccCCCccC----CHHHHHHHHHHHHHHHHCCCC-EEEECCCCH-HHHhhhhhHHHHHH
Confidence 9954 2121111 0111 2344555444444433 455555432 12223356666653
No 303
>PLN03025 replication factor C subunit; Provisional
Probab=98.34 E-value=7e-07 Score=95.54 Aligned_cols=68 Identities=25% Similarity=0.465 Sum_probs=51.2
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC--CceEEecccCCcchhhHhHh
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--SSMLRLDMSEYMERHTVSKL 707 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~--~~lIrid~sE~~~k~~vs~l 707 (725)
++||++++..+...+...+ .| ++||+||||||||++|+++|+++||.. ..++.++.|+......+..+
T Consensus 15 ~~g~~~~~~~L~~~~~~~~----~~-----~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~ 84 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDGN----MP-----NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNK 84 (319)
T ss_pred hcCcHHHHHHHHHHHhcCC----Cc-----eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHH
Confidence 7899999988876654321 12 799999999999999999999998753 35778888876554444433
No 304
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.30 E-value=7.4e-06 Score=90.97 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=100.6
Q ss_pred cccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh
Q 004878 291 PVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~ 358 (725)
.+.|.|...+.++-.|.- +..-||||+|.||+|||.+.+.+++....+...... +-. . ..+.
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGk-GsS--a---vGLT 503 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGK-GSS--A---VGLT 503 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCC-ccc--h---hcce
Confidence 355566655554444432 122589999999999999999999887554221110 000 0 0000
Q ss_pred ccccccchHHHHHHHHHHHH---HhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------
Q 004878 359 AGAKERGELEARVTTLISEI---QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (725)
Q Consensus 359 ~g~~~~g~~~~~l~~~~~~~---~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------- 422 (725)
+.....++. +.++-+. --..+.|-+|||+|.+. ....+.|...|++.
T Consensus 504 ayVtrd~dt----kqlVLesGALVLSD~GiCCIDEFDKM~-------------dStrSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 504 AYVTKDPDT----RQLVLESGALVLSDNGICCIDEFDKMS-------------DSTRSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred eeEEecCcc----ceeeeecCcEEEcCCceEEchhhhhhh-------------HHHHHHHHHHHHHhhhhHhhcceeeec
Confidence 000000000 0111000 01346689999999992 23456677777643
Q ss_pred --CeEEEEeccchh--h------hhhhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHHHhc----cCCCCCHHHH
Q 004878 423 --ELQCIASTTQDE--H------RTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAH----HNCKFTLEAI 486 (725)
Q Consensus 423 --~v~vI~at~~~~--~------~~~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~~~~----~~~~i~~~~l 486 (725)
+.-||+++|+.+ | -+.+.+.|.|.+||+ .+.++.|+...-+.+-.++...|... ....++...+
T Consensus 567 NAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~l 646 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLL 646 (804)
T ss_pred cccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHH
Confidence 336788888543 1 244578899999997 45677777765566666666655321 1122333344
Q ss_pred HHHHHHhhhhc
Q 004878 487 NAAVHLSARYI 497 (725)
Q Consensus 487 ~~l~~~s~~~i 497 (725)
...+.++...+
T Consensus 647 r~yi~yArk~i 657 (804)
T KOG0478|consen 647 RDYIRYARKNI 657 (804)
T ss_pred HHHHHHHhccC
Confidence 44555555443
No 305
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.29 E-value=1.8e-06 Score=91.18 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=49.0
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc---ccchHHHHHHHHHHHHHhcCCeEE
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK---ERGELEARVTTLISEIQKSGDVIL 386 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~---~~g~~~~~l~~~~~~~~~~~~~IL 386 (725)
...+++|+|++|||||+|+.+++.++... +..+..+.+..++...+ ..+. +...++.+.. ..+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~-------g~~v~~~~~~~l~~~lk~~~~~~~----~~~~l~~l~~--~dlL 221 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK-------GVSSTLLHFPEFIRELKNSISDGS----VKEKIDAVKE--APVL 221 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEEEHHHHHHHHHHHHhcCc----HHHHHHHhcC--CCEE
Confidence 45689999999999999999999999653 66677777666542111 1122 2333444433 3499
Q ss_pred EEccchhh
Q 004878 387 FIDEVHTL 394 (725)
Q Consensus 387 ~IDEid~l 394 (725)
+|||+..-
T Consensus 222 iIDDiG~e 229 (306)
T PRK08939 222 MLDDIGAE 229 (306)
T ss_pred EEecCCCc
Confidence 99999755
No 306
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.28 E-value=1.5e-06 Score=92.52 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=46.8
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.++||++.++.+...+...+..-. +..+++|+||||||||++|+++|+.+ +..+..++++..
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~----~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~ 66 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQE----ALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPAL 66 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchh
Confidence 389999999999888865442211 12379999999999999999999998 445666665543
No 307
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.27 E-value=8.5e-07 Score=93.23 Aligned_cols=53 Identities=32% Similarity=0.570 Sum_probs=40.2
Q ss_pred eeCcHHHHH---HHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 631 VIGQDEAVA---AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 631 v~Gq~~a~~---~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
++||+..+- .|.+.+.... +.+++||||||||||+||+.||... +.+|+.++-
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~~~~---------l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sA 81 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVEAGH---------LHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSA 81 (436)
T ss_pred hcChHhhhCCCchHHHHHhcCC---------CceeEEECCCCCCHHHHHHHHHHhh---CCceEEecc
Confidence 778877663 3444444332 1489999999999999999999997 678888874
No 308
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.27 E-value=4.7e-07 Score=110.88 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=37.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
.|+||+||||||||+||||||.+. +.+||+|.++++++++
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcc
Confidence 499999999999999999999997 7899999999998753
No 309
>PHA00729 NTP-binding motif containing protein
Probab=98.27 E-value=5.3e-06 Score=82.60 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=71.8
Q ss_pred HHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCC------cccCCCeEEEeehhhhhccccccchHHHHHHHH
Q 004878 301 RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP------VFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374 (725)
Q Consensus 301 ~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p------~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~ 374 (725)
++++.+......|++|+|+|||||||+|.+++..+.....+ ....+...+.++...+. ..++..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll----------~~L~~a 76 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL----------EKIQDA 76 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH----------HHHHHH
Confidence 34444444555689999999999999999999987411000 00112233344333322 223322
Q ss_pred HHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEe
Q 004878 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLI 454 (725)
Q Consensus 375 ~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i 454 (725)
++.. ....+|+|||+..-+... ....+ . ...++.+.+++++|++.+.+
T Consensus 77 ~~~~--~~~dlLIIDd~G~~~~~~-------~wh~~------------~-----------~~~yf~L~~aLrSR~~l~il 124 (226)
T PHA00729 77 IDND--YRIPLIIFDDAGIWLSKY-------VWYED------------Y-----------MKTFYKIYALIRTRVSAVIF 124 (226)
T ss_pred HhcC--CCCCEEEEeCCchhhccc-------chhhh------------c-----------cchHHHHHHHHHhhCcEEEE
Confidence 2111 112488999975442110 00000 0 01234567888889999999
Q ss_pred cCCCHHHHHHHHHH
Q 004878 455 SEPSQEDAVRILLG 468 (725)
Q Consensus 455 ~~Ps~ee~~~IL~~ 468 (725)
..++.++....|+.
T Consensus 125 ~~ls~edL~~~Lr~ 138 (226)
T PHA00729 125 TTPSPEDLAFYLRE 138 (226)
T ss_pred ecCCHHHHHHHHHh
Confidence 99999988888765
No 310
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.26 E-value=1.6e-05 Score=89.17 Aligned_cols=182 Identities=18% Similarity=0.281 Sum_probs=108.1
Q ss_pred cccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-------
Q 004878 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA------- 361 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~------- 361 (725)
.++|....+..+...+.. ....+++++|++|+||+++++++...... .+.+++.+||..+....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~~~~~~~lfg 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCHHHHHHHhcC
Confidence 356666666655543332 45567999999999999999999876532 25678888887543100
Q ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------------eEEEE
Q 004878 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIA 428 (725)
Q Consensus 362 ~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~ 428 (725)
...|.+..........+....+.+||||||+.| ..+.+..|..+++.+. +++|+
T Consensus 213 ~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~ 279 (441)
T PRK10365 213 HEKGAFTGADKRREGRFVEADGGTLFLDEIGDI-------------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 279 (441)
T ss_pred CCCCCcCCCCcCCCCceeECCCCEEEEeccccC-------------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEE
Confidence 000000000000000112234678999999999 4466777777777543 46888
Q ss_pred eccchhhhh--hhcccHHHHcccceEEecCCCHHHH----HHHHHHHHHHHHhccC---CCCCHHHHHHHHHH
Q 004878 429 STTQDEHRT--QFEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (725)
Q Consensus 429 at~~~~~~~--~~~ld~~L~~Rf~~I~i~~Ps~ee~----~~IL~~~~~~~~~~~~---~~i~~~~l~~l~~~ 492 (725)
+|+.+.... .-...+.|..||..+.+..|+..+| ..+++.++.++...++ ..+++++++.+..+
T Consensus 280 ~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 280 ATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred eCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 887764221 1134566666777777777765544 4445555554433222 35889888877654
No 311
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.25 E-value=2e-06 Score=92.42 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=48.8
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
++||++.++.+...+...+.. +.+..++|||||||||||++|+++|+++ +..+..++++.+..
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~ 89 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEK 89 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccC
Confidence 889999999998887655422 2233489999999999999999999998 45677777765543
No 312
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.23 E-value=7.5e-06 Score=82.74 Aligned_cols=132 Identities=19% Similarity=0.249 Sum_probs=79.6
Q ss_pred HHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH
Q 004878 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379 (725)
Q Consensus 300 ~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~ 379 (725)
..+.+.+. ......++||+|||||+.++.+|+.+ |+.++.++|..... ...+.+++.-+.
T Consensus 23 ~~l~~al~--~~~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~--------~~~l~ril~G~~ 82 (231)
T PF12774_consen 23 LTLTQALS--LNLGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMD--------YQSLSRILKGLA 82 (231)
T ss_dssp HHHHHHHC--TTTEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS---------HHHHHHHHHHHH
T ss_pred HHHHHHhc--cCCCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEeccccccc--------HHHHHHHHHHHh
Confidence 34444443 34556799999999999999999988 88999999877542 123556665555
Q ss_pred hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHh-------hhhcC---------------CCeEEEEeccchhhhh
Q 004878 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK-------PSLGR---------------GELQCIASTTQDEHRT 437 (725)
Q Consensus 380 ~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~-------~~l~~---------------~~v~vI~at~~~~~~~ 437 (725)
.. ++++++||+++|- .++...+- ..+.. ....+..|.|+ .|..
T Consensus 83 ~~-GaW~cfdefnrl~-------------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np-~y~g 147 (231)
T PF12774_consen 83 QS-GAWLCFDEFNRLS-------------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNP-GYAG 147 (231)
T ss_dssp HH-T-EEEEETCCCSS-------------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B--CCC
T ss_pred hc-Cchhhhhhhhhhh-------------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeecc-ccCC
Confidence 44 6899999999982 22222221 11111 12345555554 4666
Q ss_pred hhcccHHHHcccceEEecCCCHHHHHHHH
Q 004878 438 QFEKDKALARRFQPVLISEPSQEDAVRIL 466 (725)
Q Consensus 438 ~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL 466 (725)
..++++.|+.-|.+|.+..|+.....+++
T Consensus 148 r~~LP~nLk~lFRpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 148 RSELPENLKALFRPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp C--S-HHHCTTEEEEE--S--HHHHHHHH
T ss_pred cccCCHhHHHHhheeEEeCCCHHHHHHHH
Confidence 66888999999999999999988766654
No 313
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.19 E-value=1.3e-05 Score=82.66 Aligned_cols=179 Identities=13% Similarity=0.234 Sum_probs=112.8
Q ss_pred cCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccc--
Q 004878 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK-- 362 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~-- 362 (725)
..|+.+++....++.++..-.+ .-..++||.|++||||-.+|++......++ ..+++.++|..+-....
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~-------~~pFlalNCA~lPe~~aEs 273 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRH-------SKPFLALNCASLPEDAAES 273 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCccc-------CCCeeEeecCCCchhHhHH
Confidence 4578899999888888776555 334678999999999999999988766554 55667777766532110
Q ss_pred -----ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------------e
Q 004878 363 -----ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------L 424 (725)
Q Consensus 363 -----~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-------------v 424 (725)
-.| .+--..+|+.+ .+..+|+|||..+ +..++.-|+.+++.|. |
T Consensus 274 ElFG~apg--~~gk~GffE~A---ngGTVlLDeIgEm-------------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdV 335 (511)
T COG3283 274 ELFGHAPG--DEGKKGFFEQA---NGGTVLLDEIGEM-------------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDV 335 (511)
T ss_pred HHhcCCCC--CCCccchhhhc---cCCeEEeehhhhc-------------CHHHHHHHHHHhcCCceeecCCcceEEEEE
Confidence 001 00113344433 3457888999888 5567888888887653 5
Q ss_pred EEEEeccch--hhhhhhcccHHHHcccceEEecCCCHHHHHH----HHHHHHHHHHhccCC---CCCHHHHHHHH
Q 004878 425 QCIASTTQD--EHRTQFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHNC---KFTLEAINAAV 490 (725)
Q Consensus 425 ~vI~at~~~--~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~----IL~~~~~~~~~~~~~---~i~~~~l~~l~ 490 (725)
+||++|..+ ++-..-.....|..|+.++.+..|...||.. +.+.+.+++....++ .++++.+.++.
T Consensus 336 RVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 336 RVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred EEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 889887654 2222223345666688888888776555443 333444444334343 45666555543
No 314
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.18 E-value=4.1e-05 Score=87.46 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=107.9
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh----hhhhccccccchHHHHHHHH---H--HHHHh
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----GLLMAGAKERGELEARVTTL---I--SEIQK 380 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~----~~l~~g~~~~g~~~~~l~~~---~--~~~~~ 380 (725)
.-.+++|.|+.|++|++++++++..+.. ..++..+.. ..++ |. ++++..++.= + ..+..
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~--------~~p~r~~p~~~t~~~L~-Gg---~Dl~~~l~~g~~~~~pGlla~ 91 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA--------GTPLRRLPPGIADDRLL-GG---LDLAATLRAGRPVAQRGLLAE 91 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC--------CCCcccCCCCCcHHHcc-CC---chHHhHhhcCCcCCCCCceee
Confidence 4468999999999999999999988733 112222221 1111 11 1222222110 0 01112
Q ss_pred cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC---------------eEEEEeccchhhhhhhcccHHH
Q 004878 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE---------------LQCIASTTQDEHRTQFEKDKAL 445 (725)
Q Consensus 381 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~---------------v~vI~at~~~~~~~~~~ld~~L 445 (725)
..+.||||||+..+ ...+++.|++.++.+. +.+|++.+..+|. ..+.+++
T Consensus 92 Ah~GvL~lDe~n~~-------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~l 156 (584)
T PRK13406 92 ADGGVLVLAMAERL-------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAAL 156 (584)
T ss_pred ccCCEEEecCcccC-------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHh
Confidence 34579999999988 4578889999998764 4667764444444 3688999
Q ss_pred Hcccc-eEEecCCCHHHHH-------HHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 446 ARRFQ-PVLISEPSQEDAV-------RILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 446 ~~Rf~-~I~i~~Ps~ee~~-------~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
..||. .|.+..|+..+.. .|... .+++ .++.++++.+.+++.++..+-.. -+...+.++.-|...+
T Consensus 157 LDRf~l~v~v~~~~~~~~~~~~~~~~~I~~A-R~rl---~~v~v~~~~l~~i~~~~~~~gv~--S~Ra~i~llraARa~A 230 (584)
T PRK13406 157 ADRLAFHLDLDGLALRDAREIPIDADDIAAA-RARL---PAVGPPPEAIAALCAAAAALGIA--SLRAPLLALRAARAAA 230 (584)
T ss_pred HhheEEEEEcCCCChHHhcccCCCHHHHHHH-HHHH---ccCCCCHHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHH
Confidence 99994 7888888765432 22211 2222 47889999999988877765210 1123355555555555
Q ss_pred HHh
Q 004878 518 HIE 520 (725)
Q Consensus 518 ~~~ 520 (725)
.+.
T Consensus 231 aL~ 233 (584)
T PRK13406 231 ALA 233 (584)
T ss_pred HHc
Confidence 554
No 315
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.15 E-value=3.1e-06 Score=87.86 Aligned_cols=47 Identities=30% Similarity=0.474 Sum_probs=39.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPG 713 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppg 713 (725)
.+||+||||||||++|++||..+ +.+++++++.+-++ .+.|+|.-.|
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~---~~dllg~~~~ 69 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELT---TSDLVGSYAG 69 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCC---HHHHhhhhcc
Confidence 68999999999999999999987 66899999987543 4688887433
No 316
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.13 E-value=6.3e-06 Score=88.62 Aligned_cols=75 Identities=31% Similarity=0.487 Sum_probs=61.2
Q ss_pred HHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 619 ~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+......+...++|+++++..+..++...+ .+||.||||||||++|+++|+.+ +.+|+++.+...
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~-----------~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~ 79 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAGG-----------HVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPD 79 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcCC-----------CEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCC
Confidence 3455667777889999999888877776553 89999999999999999999998 678999999877
Q ss_pred cchhhHhHhhcC
Q 004878 699 MERHTVSKLIGS 710 (725)
Q Consensus 699 ~~k~~vs~liG~ 710 (725)
+.. +.++|.
T Consensus 80 l~p---~d~~G~ 88 (329)
T COG0714 80 LLP---SDLLGT 88 (329)
T ss_pred CCH---HHhcCc
Confidence 654 566665
No 317
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=3.2e-05 Score=78.55 Aligned_cols=123 Identities=12% Similarity=0.080 Sum_probs=80.8
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcc------------cCCCeEEEeehhhhhccccccchHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF------------LLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~------------l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~ 377 (725)
.+...||+||.|+||..+|.++|+.+...+.... ....+++.+.... .. --.+.++++.+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-----~~--I~id~ir~l~~~ 78 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-----NP--IKKEDALSIINK 78 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-----cc--CCHHHHHHHHHH
Confidence 3456799999999999999999999864321100 0011122211000 00 112334555544
Q ss_pred HH-----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccchhhhhhhcccHHHHcccc
Q 004878 378 IQ-----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQ 450 (725)
Q Consensus 378 ~~-----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~~~~~~~~ld~~L~~Rf~ 450 (725)
+. .++..|++|+++|.+ ...+.|.|+..++.+ .+.+|..|+..+ .+.|.+++|++
T Consensus 79 l~~~s~e~~~~KV~II~~ae~m-------------~~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq 140 (261)
T PRK05818 79 LNRPSVESNGKKIYIIYGIEKL-------------NKQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCV 140 (261)
T ss_pred HccCchhcCCCEEEEeccHhhh-------------CHHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhhee
Confidence 42 134679999999999 557899999999964 467777777665 78899999999
Q ss_pred eEEecCC
Q 004878 451 PVLISEP 457 (725)
Q Consensus 451 ~I~i~~P 457 (725)
.+.++.+
T Consensus 141 ~~~~~~~ 147 (261)
T PRK05818 141 QYVVLSK 147 (261)
T ss_pred eeecCCh
Confidence 8888776
No 318
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.6e-06 Score=91.19 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=40.5
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..+...+...+. | ..+||+||||||||++|+++|+.++.
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~----~----ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRV----G----HGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hccChHHHHHHHHHHHHhCCc----c----eeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 489999999999888775432 1 26999999999999999999999965
No 319
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=6.2e-06 Score=92.15 Aligned_cols=48 Identities=38% Similarity=0.562 Sum_probs=39.9
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.++||+.++..+...+...+ ...++||+||||||||++|+++|+.++.
T Consensus 15 divGq~~i~~~L~~~i~~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNS--------ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 39999999998888776543 1237899999999999999999999854
No 320
>PF14516 AAA_35: AAA-like domain
Probab=98.09 E-value=0.00011 Score=78.86 Aligned_cols=180 Identities=17% Similarity=0.189 Sum_probs=108.8
Q ss_pred cccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-ccc-------
Q 004878 293 IGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-KER------- 364 (725)
Q Consensus 293 iG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~-~~~------- 364 (725)
|.|...-+.+.+.+.. .+..+.|.||..+|||+++..+.+.+.+. +..++.+|+..+.... ...
T Consensus 14 i~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~~-------~~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-------GYRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred cCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHHC-------CCEEEEEEeecCCCcccCCHHHHHHHH
Confidence 4555555556655554 36778999999999999999999888653 6677777765532100 000
Q ss_pred ---------------chH------HHHHHHHHHHH--H-hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc
Q 004878 365 ---------------GEL------EARVTTLISEI--Q-KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (725)
Q Consensus 365 ---------------g~~------~~~l~~~~~~~--~-~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~ 420 (725)
..| ...+...+++. . ...|.||+|||+|.+++.. ....++...|+...+
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-------~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-------QIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-------chHHHHHHHHHHHHH
Confidence 000 01222333321 1 2468999999999997532 124577777877665
Q ss_pred CC-------CeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 004878 421 RG-------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 421 ~~-------~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s 493 (725)
+. ++.+|++...+.|.....-...+ +-...|.++..+.+|...+++. ++..+++..++.+..++
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPF-NIg~~i~L~~Ft~~ev~~L~~~--------~~~~~~~~~~~~l~~~t 229 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPF-NIGQPIELPDFTPEEVQELAQR--------YGLEFSQEQLEQLMDWT 229 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCc-ccccceeCCCCCHHHHHHHHHh--------hhccCCHHHHHHHHHHH
Confidence 32 35555554433332211111112 2335788898899997665533 24567888899999888
Q ss_pred hhh
Q 004878 494 ARY 496 (725)
Q Consensus 494 ~~~ 496 (725)
.++
T Consensus 230 gGh 232 (331)
T PF14516_consen 230 GGH 232 (331)
T ss_pred CCC
Confidence 875
No 321
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.09 E-value=2.8e-06 Score=83.14 Aligned_cols=44 Identities=39% Similarity=0.600 Sum_probs=34.9
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
..|+||+.++.++.-+.. |. .++||+||||||||++|+.++..|
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G~-------h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----GG-------HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----CC---------EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHc----CC-------CCeEEECCCCCCHHHHHHHHHHhC
Confidence 458999999988876554 31 289999999999999999999887
No 322
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.4e-06 Score=102.12 Aligned_cols=90 Identities=26% Similarity=0.334 Sum_probs=60.8
Q ss_pred ccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCc--
Q 004878 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESS-- 689 (725)
Q Consensus 612 l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~-- 689 (725)
+.|++.++|.++...|++.| ...+..+-.+...++..|+ |+||+||||||||++|+|||..+-..+.+
T Consensus 262 v~fd~vggl~~~i~~LKEmV------l~PLlyPE~f~~~~itpPr----gvL~~GppGTGkTl~araLa~~~s~~~~kis 331 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMV------LLPLLYPEFFDNFNITPPR----GVLFHGPPGTGKTLMARALAAACSRGNRKIS 331 (1080)
T ss_pred cCccccccHHHHHHHHHHHH------HhHhhhhhHhhhcccCCCc----ceeecCCCCCchhHHHHhhhhhhcccccccc
Confidence 45666666666666555433 2233333355566777775 99999999999999999999998333322
Q ss_pred eEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 690 MLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 690 lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
|..-|+.+.++| |||+.|.-.|
T Consensus 332 ffmrkgaD~lsk------------wvgEaERqlr 353 (1080)
T KOG0732|consen 332 FFMRKGADCLSK------------WVGEAERQLR 353 (1080)
T ss_pred hhhhcCchhhcc------------ccCcHHHHHH
Confidence 334455666666 9999886554
No 323
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=2.9e-05 Score=75.74 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=63.1
Q ss_pred HHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccch----H---------H
Q 004878 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE----L---------E 368 (725)
Q Consensus 302 l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~----~---------~ 368 (725)
++..++.....|.|+.|||||||||+.+-+|+.+..+.. .+ ..+++..+|-.+-++|. ..|- + .
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~-~~-l~kkv~IiDersEIag~-~~gvpq~~~g~R~dVld~c 204 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN-QF-LPKKVGIIDERSEIAGC-LNGVPQHGRGRRMDVLDPC 204 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcccc-cc-CCceEEEEeccchhhcc-ccCCchhhhhhhhhhcccc
Confidence 666677778889999999999999999999999865422 22 36778888866665542 2221 1 1
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhh
Q 004878 369 ARVTTLISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 369 ~~l~~~~~~~~~~~~~IL~IDEid~l 394 (725)
-+-..++..+++..|-|+++|||.+.
T Consensus 205 pk~~gmmmaIrsm~PEViIvDEIGt~ 230 (308)
T COG3854 205 PKAEGMMMAIRSMSPEVIIVDEIGTE 230 (308)
T ss_pred hHHHHHHHHHHhcCCcEEEEeccccH
Confidence 11233455566778899999999766
No 324
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.07 E-value=8.8e-06 Score=78.25 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=57.2
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ 710 (725)
++|.+.++..+.+.++..-. .+ ..+|++|++||||+.+|++|=+.-...+.+||.||++.+.+...-+.|+|.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~----~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD----LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST----S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC----CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 46777777777666655421 11 278999999999999999999976556789999999999888778899998
Q ss_pred CCcc
Q 004878 711 PPGY 714 (725)
Q Consensus 711 ppgy 714 (725)
..|.
T Consensus 74 ~~~~ 77 (168)
T PF00158_consen 74 EKGA 77 (168)
T ss_dssp CSSS
T ss_pred cccc
Confidence 7664
No 325
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.07 E-value=6.5e-06 Score=90.41 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=48.8
Q ss_pred HHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 617 ~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
...+..+.+.|.+.++|++++++.+..++... +.+||+||||||||++|++||..+
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag-----------~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHccC-----------CCEEEECCCChhHHHHHHHHHHHh
Confidence 34567888999999999999999998777644 289999999999999999999986
No 326
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.06 E-value=7.9e-06 Score=75.87 Aligned_cols=67 Identities=36% Similarity=0.628 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh
Q 004878 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 633 Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li 708 (725)
|++..+..+...+... . ..+++++||||||||++++.+++.++..+..++.++.+++.........+
T Consensus 2 ~~~~~~~~i~~~~~~~------~---~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALELP------P---PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhCC------C---CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 5556666666555432 1 12799999999999999999999987667789999999887765555444
No 327
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.06 E-value=7.6e-05 Score=69.13 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=75.9
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHhcCC-------Ccc-----cCCCeEEEeehhhh--h----ccc----cc---cch
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIVQAEV-------PVF-----LLSKRIMSLDMGLL--M----AGA----KE---RGE 366 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~~~~~-------p~~-----l~~~~l~~ld~~~l--~----~g~----~~---~g~ 366 (725)
-.+.++|+||+||||++..++..+.+..+ |.. ..+.+++.++-..- + .+. +| ...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 45899999999999999999999865421 111 11333443331111 0 011 11 112
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHH
Q 004878 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (725)
Q Consensus 367 ~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~ 446 (725)
+++..-..++.+... -.+++||||..+-- ....+...+...+..++. +|++--... ...+-..++
T Consensus 86 le~i~~~al~rA~~~-aDvIIIDEIGpMEl----------ks~~f~~~ve~vl~~~kp-liatlHrrs---r~P~v~~ik 150 (179)
T COG1618 86 LEEIAIPALRRALEE-ADVIIIDEIGPMEL----------KSKKFREAVEEVLKSGKP-LIATLHRRS---RHPLVQRIK 150 (179)
T ss_pred HHHHhHHHHHHHhhc-CCEEEEecccchhh----------ccHHHHHHHHHHhcCCCc-EEEEEeccc---CChHHHHhh
Confidence 333333334443333 34889999998831 245677778888877765 555433221 001112344
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHH
Q 004878 447 RRFQPVLISEPSQEDAVRILLGLREK 472 (725)
Q Consensus 447 ~Rf~~I~i~~Ps~ee~~~IL~~~~~~ 472 (725)
+++..+.+ .+++-|-.|+..++..
T Consensus 151 ~~~~v~v~--lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 151 KLGGVYVF--LTPENRNRILNEILSV 174 (179)
T ss_pred hcCCEEEE--EccchhhHHHHHHHHH
Confidence 45544442 3334444666665543
No 328
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.06 E-value=2.8e-06 Score=76.27 Aligned_cols=44 Identities=39% Similarity=0.607 Sum_probs=30.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc-cCCcchhhHhHhhcCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM-SEYMERHTVSKLIGSP 711 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~-sE~~~k~~vs~liG~p 711 (725)
++||.|+||+|||++|++||+.+ +..|.||.+ |+++ .+.++|.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpdll----PsDi~G~~ 45 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPDLL----PSDILGFP 45 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT------HHHHHEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCCCC----cccceeee
Confidence 48999999999999999999998 678999987 4555 67888873
No 329
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.05 E-value=9.5e-06 Score=92.71 Aligned_cols=206 Identities=15% Similarity=0.204 Sum_probs=113.4
Q ss_pred CCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 288 LIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
-...+.|.+...+.+.-.|.. +..-|+||+|.||+|||.|.+.+++....+-.. .+..-. ..
T Consensus 284 iaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt---sgkgss---~~ 357 (682)
T COG1241 284 IAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT---SGKGSS---AA 357 (682)
T ss_pred hcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE---cccccc---cc
Confidence 345688988877766655533 122589999999999999999999877432100 000000 00
Q ss_pred hhhcc-ccc--cchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCe--------
Q 004878 356 LLMAG-AKE--RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL-------- 424 (725)
Q Consensus 356 ~l~~g-~~~--~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v-------- 424 (725)
.+.+. .++ .|+|. +.. ..+--..+.|.+|||+|.+ .....+.+...|+++.+
T Consensus 358 GLTAav~rd~~tge~~--Lea--GALVlAD~Gv~cIDEfdKm-------------~~~dr~aihEaMEQQtIsIaKAGI~ 420 (682)
T COG1241 358 GLTAAVVRDKVTGEWV--LEA--GALVLADGGVCCIDEFDKM-------------NEEDRVAIHEAMEQQTISIAKAGIT 420 (682)
T ss_pred CceeEEEEccCCCeEE--EeC--CEEEEecCCEEEEEeccCC-------------ChHHHHHHHHHHHhcEeeeccccee
Confidence 01000 001 11110 000 0000134679999999998 22345566666665433
Q ss_pred -------EEEEeccchh--h------hhhhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHHHhccCCCC------
Q 004878 425 -------QCIASTTQDE--H------RTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKF------ 481 (725)
Q Consensus 425 -------~vI~at~~~~--~------~~~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i------ 481 (725)
-+++++|+.. | ...+.++++|.+||+ .+..+.|+.+.-..+...++..+.....-..
T Consensus 421 atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~ 500 (682)
T COG1241 421 ATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGV 500 (682)
T ss_pred eecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccc
Confidence 3566777653 1 245678899999997 4556678777666666666654421111100
Q ss_pred ------CHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 482 ------TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 482 ------~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
+.+.+...+.++.+++. -.+.+++.+.+.......
T Consensus 501 ~~~~~~~~~~lrkYI~YAR~~v~-P~lt~ea~e~l~~~Yv~~ 541 (682)
T COG1241 501 DEVEERDFELLRKYISYARKNVT-PVLTEEAREELEDYYVEM 541 (682)
T ss_pred cccccCcHHHHHHHHHHHhccCC-cccCHHHHHHHHHHHHHh
Confidence 34556666666665532 345566666665554433
No 330
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.05 E-value=1.4e-05 Score=91.06 Aligned_cols=79 Identities=34% Similarity=0.599 Sum_probs=54.8
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh-------cCCCCceEEecccC--Ccc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY-------FGSESSMLRLDMSE--YME 700 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l-------fg~~~~lIrid~sE--~~~ 700 (725)
.++||++++..+...+. +-. | ..+||+||||||||++|+++.+.. |..+.+|+.+|+.. +.+
T Consensus 66 ~iiGqs~~i~~l~~al~----~~~----~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~ 136 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC----GPN----P-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDE 136 (531)
T ss_pred HeeCcHHHHHHHHHHHh----CCC----C-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCc
Confidence 38999999988875532 111 1 278999999999999999998752 33356899999863 334
Q ss_pred hhhHhHhhcCC--Cccccc
Q 004878 701 RHTVSKLIGSP--PGYVGV 717 (725)
Q Consensus 701 k~~vs~liG~p--pgyvG~ 717 (725)
+.....++|++ |.|.|.
T Consensus 137 ~~~~~~li~~~~~p~~~~~ 155 (531)
T TIGR02902 137 RGIADPLIGSVHDPIYQGA 155 (531)
T ss_pred cccchhhcCCcccchhccc
Confidence 33345777764 555543
No 331
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.04 E-value=5.8e-06 Score=89.23 Aligned_cols=61 Identities=31% Similarity=0.622 Sum_probs=48.9
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC--CceEEecccCCcc
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--SSMLRLDMSEYME 700 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~--~~lIrid~sE~~~ 700 (725)
++|++++++.+...+...+ . .++||+||||||||++|+++|+++++.. .+++.++++++.+
T Consensus 17 ~~g~~~~~~~L~~~~~~~~----~-----~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSPN----L-----PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD 79 (337)
T ss_pred hcCCHHHHHHHHHHHhCCC----C-----ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh
Confidence 7799999999887765321 1 2789999999999999999999997653 4688899888753
No 332
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=9.3e-06 Score=92.02 Aligned_cols=47 Identities=43% Similarity=0.714 Sum_probs=40.2
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.|+||+.++..+...+...+. ...+||+||+|||||++|+++|+.+.
T Consensus 16 dVIGQe~vv~~L~~aI~~grl--------~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGRL--------HHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999988875432 13889999999999999999999984
No 333
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=1.1e-05 Score=90.01 Aligned_cols=46 Identities=33% Similarity=0.660 Sum_probs=39.1
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++||+.++..+.+++...+. | ..+||+||+|||||++|+++|+.+
T Consensus 14 dliGQe~vv~~L~~a~~~~ri----~----ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNKI----P----QSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCCC----C----ceEEEECCCCccHHHHHHHHHHHH
Confidence 489999999999888775542 1 289999999999999999999976
No 334
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=6.8e-06 Score=89.67 Aligned_cols=58 Identities=28% Similarity=0.484 Sum_probs=45.4
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCC-eeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPT-AAMLFCGPTGVGKTELAKSLAACYFGS 686 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~-~~iLl~GPpGtGKT~lAkaLA~~lfg~ 686 (725)
+.|+||+.+++.+...+...+.+.....++. .++||+||||||||++|+++|+.++..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3589999999999999987664333222222 389999999999999999999988543
No 335
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=6.5e-06 Score=88.15 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=44.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPG 713 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppg 713 (725)
.|.|||||||||||++.-|||++| +-...-++.++..+-....+|+=+.|+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~dLr~LL~~t~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSDLRHLLLATPN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcHHHHHHHHhCCC
Confidence 399999999999999999999999 778888999988877777787766553
No 336
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=9.2e-06 Score=91.53 Aligned_cols=46 Identities=37% Similarity=0.601 Sum_probs=39.4
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
|+||+.+++.+...+...+. ...+||+||||||||++|+++|+.++
T Consensus 16 vvGq~~v~~~L~~~i~~~~l--------~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQGRL--------GHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred hcChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999888876432 12679999999999999999999985
No 337
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=9.8e-06 Score=92.40 Aligned_cols=47 Identities=38% Similarity=0.607 Sum_probs=39.9
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.|+||+.++..+...+...+. + ..+||+||+|||||++|+++|+.++
T Consensus 14 eivGq~~i~~~L~~~i~~~r~----~----ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGRI----N----HAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 388999999999988875431 1 2589999999999999999999987
No 338
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.99 E-value=6.2e-06 Score=96.17 Aligned_cols=38 Identities=34% Similarity=0.585 Sum_probs=35.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
++||+||||||||++|+++|+++ +.+|+.++.+++.+.
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~ 224 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM 224 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHh
Confidence 89999999999999999999998 778999999988764
No 339
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=1.3e-05 Score=92.56 Aligned_cols=48 Identities=35% Similarity=0.630 Sum_probs=40.8
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..+..++...+. ...+||+||+|||||++|+++|+.++.
T Consensus 19 dIiGQe~~v~~L~~aI~~~rl--------~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNKI--------SHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 389999999999998875432 137899999999999999999999864
No 340
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.99 E-value=8.3e-06 Score=75.97 Aligned_cols=44 Identities=41% Similarity=0.642 Sum_probs=37.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ 710 (725)
++||+||||||||++|+.+|+.+ +.+++.+.++.-++ ...|+|.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~---~~dl~g~ 44 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTT---EEDLIGS 44 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTST---HHHHHCE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccc---cccceee
Confidence 48999999999999999999998 77899999998765 4577775
No 341
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=1.2e-05 Score=90.89 Aligned_cols=48 Identities=42% Similarity=0.625 Sum_probs=41.2
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..+...+...+. | ..+||+||||||||++|+++|+.++.
T Consensus 17 divGq~~v~~~L~~~~~~~~l----~----ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQYL----H----HAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCCC----C----eeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 389999999999999876542 1 26899999999999999999999864
No 342
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=1.4e-05 Score=86.94 Aligned_cols=49 Identities=39% Similarity=0.554 Sum_probs=40.5
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
+.|+||+.+++.+...+...+. | ..+||+||||||||++|+++|+.++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~----~----h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRI----H----HAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCC----C----eEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3489999999999888875431 1 26899999999999999999999863
No 343
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=1.4e-05 Score=89.10 Aligned_cols=48 Identities=38% Similarity=0.563 Sum_probs=40.9
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..+...++..+. | ..+|||||||||||++|+++|+.++.
T Consensus 18 diiGq~~~v~~L~~~i~~~~i----~----ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNRA----A----HAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCCC----c----eEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 389999999999888875432 1 37999999999999999999999875
No 344
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.96 E-value=8.6e-06 Score=90.69 Aligned_cols=175 Identities=17% Similarity=0.247 Sum_probs=107.7
Q ss_pred cccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh--------cccc
Q 004878 293 IGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------AGAK 362 (725)
Q Consensus 293 iG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~--------~g~~ 362 (725)
++.+..++.+...+.+ ...-++++.|++||||-.+++++.+.-. . .-+++.++|..+- .|+
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~-~-------~gpfvAvNCaAip~~liesELFGy- 386 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE-A-------AGPFVAVNCAAIPEALIESELFGY- 386 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc-c-------cCCeEEEEeccchHHhhhHHHhcc-
Confidence 4566666666665554 4556799999999999999999998764 3 3345566664432 111
Q ss_pred ccchHHHH-HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC------------eEEEEe
Q 004878 363 ERGELEAR-VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------LQCIAS 429 (725)
Q Consensus 363 ~~g~~~~~-l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------------v~vI~a 429 (725)
..|.|... .+.....+....+..||+|||..+ ..+++..|+.+|+.+. |.||++
T Consensus 387 ~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~-------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~a 453 (606)
T COG3284 387 VAGAFTGARRKGYKGKLEQADGGTLFLDEIGDM-------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAA 453 (606)
T ss_pred CccccccchhccccccceecCCCccHHHHhhhc-------------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEec
Confidence 12222211 111112223445679999999988 6678899999998654 478888
Q ss_pred ccchhhhhhh---cccHHHHcccceEEecCCCHHH---HHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 430 TTQDEHRTQF---EKDKALARRFQPVLISEPSQED---AVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 430 t~~~~~~~~~---~ld~~L~~Rf~~I~i~~Ps~ee---~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
|+.+- .... .....|--|++...|..|+..+ +...|..+..++.. ....++++++..+..
T Consensus 454 th~dl-~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~ 519 (606)
T COG3284 454 THRDL-AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLA 519 (606)
T ss_pred cCcCH-HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC-CCccCCHHHHHHHHh
Confidence 77652 1111 1223344467666666665544 44555555554432 567889998887765
No 345
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=6.7e-06 Score=90.64 Aligned_cols=48 Identities=44% Similarity=0.649 Sum_probs=40.4
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..+...+...+.+ ..+||+||||||||++|+++|+.+..
T Consensus 19 dvVGQe~iv~~L~~~i~~~ri~--------ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGKIG--------HAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhChHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3899999999998888765421 26899999999999999999999854
No 346
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.94 E-value=2.1e-05 Score=85.56 Aligned_cols=48 Identities=40% Similarity=0.657 Sum_probs=40.2
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.++||+++++.+...+...+. ...+|||||||+|||++|+++|+.++.
T Consensus 15 ~iig~~~~~~~l~~~~~~~~~--------~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGRI--------AHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred hccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 489999999999988865331 137899999999999999999999864
No 347
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=1.7e-05 Score=91.17 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=40.3
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.++||+.++..+...+...+. + .++||+||+|||||++|+++|+.++.
T Consensus 17 eivGQe~i~~~L~~~i~~~ri----~----ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDRV----G----HGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCCC----C----eeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 488999999999888765432 1 27999999999999999999999864
No 348
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=1.6e-05 Score=92.81 Aligned_cols=49 Identities=35% Similarity=0.551 Sum_probs=41.1
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~ 686 (725)
.|+||+.++..+.+++...+. + ..+||+||||||||++|+++|+.++..
T Consensus 17 dIIGQe~Iv~~LknaI~~~rl----~----HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQRL----H----HAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCCC----C----eEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 389999999999988876542 1 257999999999999999999998653
No 349
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.92 E-value=0.00021 Score=74.91 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=90.9
Q ss_pred cccccHHHHHHHHHHHhcCC---CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh---------
Q 004878 291 PVIGRETEIQRIIQILCRRT---KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------- 358 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~~~---~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~--------- 358 (725)
.+.+|+.+++.+...+.... +.+++|+|.+|||||.+++.+.+.. +.+-+++++-+..
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----------n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----------NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----------CCcceeeehHHhccHHHHHHHH
Confidence 57789999999999987643 3556999999999999999999887 3333444432211
Q ss_pred ---cc-ccccchH----HHHHHHHHHHHHh-------cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHH---hhhhc
Q 004878 359 ---AG-AKERGEL----EARVTTLISEIQK-------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL---KPSLG 420 (725)
Q Consensus 359 ---~g-~~~~g~~----~~~l~~~~~~~~~-------~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L---~~~l~ 420 (725)
.+ ....|.. .+.+.+.+....+ .....|++|++|.+-. .+.-+.+.| ..++.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD----------~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD----------MDAILLQCLFRLYELLN 146 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc----------cchHHHHHHHHHHHHhC
Confidence 10 1111211 1233443333322 2468899999999942 222233333 24445
Q ss_pred CCCeEEEEeccchhhhhhhcccHHHHc---cc--ceEEecCCCHHHHHHHHHH
Q 004878 421 RGELQCIASTTQDEHRTQFEKDKALAR---RF--QPVLISEPSQEDAVRILLG 468 (725)
Q Consensus 421 ~~~v~vI~at~~~~~~~~~~ld~~L~~---Rf--~~I~i~~Ps~ee~~~IL~~ 468 (725)
...+.+|.+....+ ..... -+ -++.|+.|+.++...|+..
T Consensus 147 ~~~i~iils~~~~e--------~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 147 EPTIVIILSAPSCE--------KQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred CCceEEEEeccccH--------HHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 56666665544333 11111 22 2688899999999999865
No 350
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=1.9e-05 Score=89.20 Aligned_cols=48 Identities=40% Similarity=0.628 Sum_probs=40.2
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..+...+...+. ...+||+||||||||++|+++|+.++.
T Consensus 17 diiGq~~~v~~L~~~i~~~rl--------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQKV--------HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 388999999999888875431 126899999999999999999999863
No 351
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.90 E-value=3.3e-06 Score=90.56 Aligned_cols=198 Identities=17% Similarity=0.223 Sum_probs=97.9
Q ss_pred cccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh--
Q 004878 291 PVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL-- 356 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~-- 356 (725)
.+.|.+.....+.-.|.. +..-|+||+|+||+|||.|.+.+++.... .+ +.+...
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr----------~v-~~~g~~~s 93 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR----------SV-YTSGKGSS 93 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS----------EE-EEECCGST
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc----------eE-EECCCCcc
Confidence 467777665554433322 22348999999999999999987655421 11 111111
Q ss_pred ---hhcc---ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCe------
Q 004878 357 ---LMAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL------ 424 (725)
Q Consensus 357 ---l~~g---~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v------ 424 (725)
+.+. ....++|.-.-..+ + ...+.|++|||++.+ ..+..+.|...|+++.+
T Consensus 94 ~~gLta~~~~d~~~~~~~leaGal---v-lad~GiccIDe~dk~-------------~~~~~~~l~eaMEqq~isi~kag 156 (331)
T PF00493_consen 94 AAGLTASVSRDPVTGEWVLEAGAL---V-LADGGICCIDEFDKM-------------KEDDRDALHEAMEQQTISIAKAG 156 (331)
T ss_dssp CCCCCEEECCCGGTSSECEEE-HH---H-HCTTSEEEECTTTT---------------CHHHHHHHHHHHCSCEEECTSS
T ss_pred cCCccceeccccccceeEEeCCch---h-cccCceeeecccccc-------------cchHHHHHHHHHHcCeeccchhh
Confidence 1100 00111110000011 1 234679999999999 22446677888876543
Q ss_pred ---------EEEEeccchhhh--------hhhcccHHHHcccceEE--ecCCCHHHHHHHHHHHHHHHHhcc--------
Q 004878 425 ---------QCIASTTQDEHR--------TQFEKDKALARRFQPVL--ISEPSQEDAVRILLGLREKYEAHH-------- 477 (725)
Q Consensus 425 ---------~vI~at~~~~~~--------~~~~ld~~L~~Rf~~I~--i~~Ps~ee~~~IL~~~~~~~~~~~-------- 477 (725)
.|++++|+...+ +.+.+.+.|.+||+.|. .+.|+.+.-..+-..++..+....
T Consensus 157 i~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~ 236 (331)
T PF00493_consen 157 IVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIK 236 (331)
T ss_dssp SEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------
T ss_pred hcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecccccccccccccc
Confidence 678888876411 22357788999998443 466776655566555554332111
Q ss_pred --CCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 478 --NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 478 --~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
...++.+.+...+.++...+. -.+++++.+++.......
T Consensus 237 ~~~~~~~~~~lr~yI~yar~~~~-P~ls~ea~~~I~~~Yv~l 277 (331)
T PF00493_consen 237 KNDKPISEDLLRKYIAYARQNIH-PVLSEEAKELIINYYVEL 277 (331)
T ss_dssp SSS-TT-HCCCHHHHHHHHHHC---EE-HHCHHHHHHHHCCC
T ss_pred ccCCccCHHHHHHHHHHHHhhcc-cccCHHHHHHHHHHHHHh
Confidence 124566667777777764432 245566677766655543
No 352
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=1.9e-05 Score=89.40 Aligned_cols=48 Identities=38% Similarity=0.613 Sum_probs=41.5
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..|.+.+...+. ...+||+||+|||||++|++||+.++.
T Consensus 17 dVIGQe~vv~~L~~al~~gRL--------pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRL--------HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 489999999999999886652 137899999999999999999999964
No 353
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.87 E-value=0.00012 Score=69.55 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=59.4
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc----------------------cccccchHHHHH
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----------------------GAKERGELEARV 371 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~----------------------g~~~~g~~~~~l 371 (725)
++|+|+||+|||+++..++...... +..++.++...... ............
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-------~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-------GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL 74 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-------CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHH
Confidence 6899999999999999999887542 44455544322110 000011111111
Q ss_pred HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCCcHHHHHHHhhhhcCCCeEEEEeccch
Q 004878 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLGRGELQCIASTTQD 433 (725)
Q Consensus 372 ~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l~~~~v~vI~at~~~ 433 (725)
......+....+.+++|||+..+.......... ..........|...+.+..+.+|+++...
T Consensus 75 ~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 75 SKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred HHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 222333445678899999999886432100000 00111223333444445566666665544
No 354
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.86 E-value=0.00014 Score=80.53 Aligned_cols=207 Identities=16% Similarity=0.225 Sum_probs=116.3
Q ss_pred CCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 288 LIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
-+..+.|.+....-+.-.|.- +.--|++|+|.||+||+-+.++.+..+.++-.. .|+.- ..+
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt---sGkaS---SaA 416 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT---SGKAS---SAA 416 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe---cCccc---ccc
Confidence 345678888877776655532 333589999999999999999998876432100 00000 000
Q ss_pred hhhcc---ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC---------
Q 004878 356 LLMAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--------- 423 (725)
Q Consensus 356 ~l~~g---~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~--------- 423 (725)
.+.+. ....|+|.-.-.. +--..+.|-+|||+|.+ ...-+..+...|++..
T Consensus 417 GLTaaVvkD~esgdf~iEAGA----LmLADnGICCIDEFDKM-------------d~~dqvAihEAMEQQtISIaKAGv~ 479 (764)
T KOG0480|consen 417 GLTAAVVKDEESGDFTIEAGA----LMLADNGICCIDEFDKM-------------DVKDQVAIHEAMEQQTISIAKAGVV 479 (764)
T ss_pred cceEEEEecCCCCceeeecCc----EEEccCceEEechhccc-------------ChHhHHHHHHHHHhheehheecceE
Confidence 11000 0111221100000 00134669999999999 1111334555555433
Q ss_pred ------eEEEEeccch--------hhhhhhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHHHhc-----cCCCCC
Q 004878 424 ------LQCIASTTQD--------EHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAH-----HNCKFT 482 (725)
Q Consensus 424 ------v~vI~at~~~--------~~~~~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~~~~-----~~~~i~ 482 (725)
..||+++|+- ..++.+.+++++.+||+ .|-++.|++..-..|-+++....... ....++
T Consensus 480 aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~ 559 (764)
T KOG0480|consen 480 ATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYT 559 (764)
T ss_pred EeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccccccccccc
Confidence 2467777764 23456778999999996 68889998887777777766543111 112466
Q ss_pred HHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHH
Q 004878 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519 (725)
Q Consensus 483 ~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~ 519 (725)
-+.+...+.++..+.+ .+..++...+.+-....+.
T Consensus 560 ~e~vrkYi~yAR~~~P--~ls~ea~~~lve~Y~~lR~ 594 (764)
T KOG0480|consen 560 LEQVRKYIRYARNFKP--KLSKEASEMLVEKYKGLRQ 594 (764)
T ss_pred HHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHH
Confidence 6777666666664332 2233444555444444443
No 355
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.85 E-value=1.5e-05 Score=88.35 Aligned_cols=56 Identities=29% Similarity=0.546 Sum_probs=43.8
Q ss_pred eeCcHHHHHH---HHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 631 VIGQDEAVAA---ISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 631 v~Gq~~a~~~---i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
++||++++.. +...+...+ + .+++|+||||||||++|++||+.+ +..|+.++.+..
T Consensus 14 ~vGq~~~v~~~~~L~~~i~~~~--------~-~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~ 72 (413)
T PRK13342 14 VVGQEHLLGPGKPLRRMIEAGR--------L-SSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTS 72 (413)
T ss_pred hcCcHHHhCcchHHHHHHHcCC--------C-ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccc
Confidence 8899988766 666654321 1 289999999999999999999997 667888887643
No 356
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=3e-05 Score=88.89 Aligned_cols=48 Identities=35% Similarity=0.581 Sum_probs=40.0
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.+++.|.+.+...+. ...+||+||+|||||++|++||+.++.
T Consensus 17 EVIGQe~Vv~~L~~aL~~gRL--------~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGRL--------HHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 389999999999888765431 127799999999999999999999853
No 357
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.84 E-value=0.00094 Score=71.65 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=59.6
Q ss_pred cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhc----------ccHHHHccc-
Q 004878 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE----------KDKALARRF- 449 (725)
Q Consensus 381 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~----------ld~~L~~Rf- 449 (725)
..+.|++|||+|++-+ +...++.+.++.++.-.++++|.+.......+.+. ....+..+|
T Consensus 171 ~~~iViiIDdLDR~~~---------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKii 241 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP---------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKII 241 (325)
T ss_pred CceEEEEEcchhcCCc---------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhc
Confidence 4578999999999932 23556778888888888898888887664333221 123444455
Q ss_pred c-eEEecCCCHHHHHHHHHHHHHHHH
Q 004878 450 Q-PVLISEPSQEDAVRILLGLREKYE 474 (725)
Q Consensus 450 ~-~I~i~~Ps~ee~~~IL~~~~~~~~ 474 (725)
+ .+.+|+|+..+....+......+.
T Consensus 242 q~~~~lP~~~~~~~~~~~~~~~~~~~ 267 (325)
T PF07693_consen 242 QVPFSLPPPSPSDLERYLNELLESLE 267 (325)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 4 688888898888888887766553
No 358
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=3.2e-05 Score=88.63 Aligned_cols=48 Identities=35% Similarity=0.617 Sum_probs=40.9
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
..|+||+.++..+...+...+. ...+||+||+|||||++|+.+|+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKI--------SHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3489999999999998886442 13789999999999999999999986
No 359
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.84 E-value=2.9e-05 Score=81.61 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=39.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ 710 (725)
.+||.||||||||++|++||..+ +.++++|++++-++. +.|+|.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~---~DliG~ 109 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSR---IDLVGK 109 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCCh---hhcCCC
Confidence 79999999999999999999999 789999999988764 578887
No 360
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00076 Score=67.46 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh---------hc--cccccc-
Q 004878 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL---------MA--GAKERG- 365 (725)
Q Consensus 298 ~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l---------~~--g~~~~g- 365 (725)
.+..+...+. ....-+.++|+.|+|||.+.+++...+..+. ..++.+|-..+ +. ......
T Consensus 39 ~l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~-------~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~ 110 (269)
T COG3267 39 ALLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASLNEDQ-------VAVVVIDKPTLSDATLLEAIVADLESQPKVN 110 (269)
T ss_pred HHHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhcCCCc-------eEEEEecCcchhHHHHHHHHHHHhccCccch
Confidence 3333333333 3334578999999999999997776664321 11223331111 10 011111
Q ss_pred ---hHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccchhhhhh-
Q 004878 366 ---ELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQ- 438 (725)
Q Consensus 366 ---~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~~~~~~- 438 (725)
..+..-+.+.+..++. .+.++++||+|.+. ....+....|...-.+ +.+.|+....+.- ...
T Consensus 111 ~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L-~~~l 179 (269)
T COG3267 111 VNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLN----------DSALEALRLLTNLEEDSSKLLSIVLIGQPKL-RPRL 179 (269)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhC----------hhHHHHHHHHHhhcccccCceeeeecCCccc-chhh
Confidence 1223333344444444 45899999999993 1233333333333332 2333444333321 000
Q ss_pred -hcccHHHHcccce-EEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 439 -FEKDKALARRFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 439 -~~ld~~L~~Rf~~-I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
...-..+..|+.. |.+++.+.++....|+..++.-. ...--++++++..+...+++|
T Consensus 180 r~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~-~~~~l~~~~a~~~i~~~sqg~ 238 (269)
T COG3267 180 RLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAG-LPEPLFSDDALLLIHEASQGI 238 (269)
T ss_pred chHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccC-CCcccCChhHHHHHHHHhccc
Confidence 0111234458865 88899999999999988877552 222346888888887777663
No 361
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=3.1e-05 Score=88.09 Aligned_cols=48 Identities=40% Similarity=0.624 Sum_probs=40.6
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..+...+...+. ...+||+||||||||++|+++|+.++.
T Consensus 17 divGq~~v~~~L~~~i~~~~~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQRL--------HHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCCC--------CEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 388999999999988875432 136899999999999999999999864
No 362
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=2.8e-05 Score=89.28 Aligned_cols=48 Identities=38% Similarity=0.574 Sum_probs=40.8
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..+.+.+...+. + ..+||+||+|||||++|+++|+.++.
T Consensus 17 divGQe~vv~~L~~~l~~~rl----~----hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGRL----H----HAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 389999999999988876542 1 26799999999999999999999855
No 363
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=3.7e-05 Score=87.80 Aligned_cols=48 Identities=33% Similarity=0.637 Sum_probs=41.0
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..+...+...+. ...+|||||+|+|||++|+++|+.++.
T Consensus 17 diiGqe~iv~~L~~~i~~~~i--------~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNKI--------ANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred HccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 389999999999988875432 127999999999999999999999864
No 364
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=3.6e-05 Score=88.60 Aligned_cols=48 Identities=35% Similarity=0.535 Sum_probs=40.5
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.++||+.++..+...+...+. ...+|||||+|||||++|+++|+.++.
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGRV--------AHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred HccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 489999999999988875431 137899999999999999999999863
No 365
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.80 E-value=2.7e-05 Score=78.34 Aligned_cols=64 Identities=28% Similarity=0.414 Sum_probs=50.5
Q ss_pred CceeCcHHHHHHHH---HHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 629 KRVIGQDEAVAAIS---RAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~---~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
..++||.+|-++-. +.++..+..- ..+||.||||||||.||-+|+++| |+.-+|..+-+||...
T Consensus 38 ~g~vGQ~~AReAagiivdlik~KkmaG-------ravLlaGppgtGKTAlAlaisqEL-G~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDLIKSKKMAG-------RAVLLAGPPGTGKTALALAISQEL-GPKVPFCPMVGSEVYS 104 (456)
T ss_pred cccccchhhhhhhhHHHHHHHhhhccC-------cEEEEecCCCCchhHHHHHHHHHh-CCCCCcccccchhhhh
Confidence 45889998877643 4444433211 189999999999999999999998 9999999999999854
No 366
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=4.5e-05 Score=90.44 Aligned_cols=47 Identities=40% Similarity=0.626 Sum_probs=40.4
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.|+||+.+++.|.+.+...+. ...+||+||+|||||++|++||+.|+
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri--------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRI--------NHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCC--------CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999876542 12689999999999999999999996
No 367
>PRK12377 putative replication protein; Provisional
Probab=97.79 E-value=2.6e-05 Score=79.62 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=36.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+++|+||||||||.||.|||+.+...+..++.+.++++++.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 89999999999999999999999766677888999988874
No 368
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.78 E-value=0.00083 Score=70.91 Aligned_cols=182 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred CcccccHHHHHHHHHHHhc------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-----
Q 004878 290 DPVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----- 358 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~----- 358 (725)
+++.|.++.+.+++..+.. ..+.-++|.||.|+|||++++.|.+-+ ....+|.+....+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l---------e~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL---------EEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh---------heEEEEEecCCccccChhh
Q ss_pred ---------------------------------------------------------------ccccccchHH--HHHHH
Q 004878 359 ---------------------------------------------------------------AGAKERGELE--ARVTT 373 (725)
Q Consensus 359 ---------------------------------------------------------------~g~~~~g~~~--~~l~~ 373 (725)
....+...+. ..++.
T Consensus 132 L~P~~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~k 211 (358)
T PF08298_consen 132 LFPKELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRK 211 (358)
T ss_pred hCCHhHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHH
Q ss_pred HHHHHHhcCCeEEEEc-----------cchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCe-------------EEEEe
Q 004878 374 LISEIQKSGDVILFID-----------EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL-------------QCIAS 429 (725)
Q Consensus 374 ~~~~~~~~~~~IL~ID-----------Eid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v-------------~vI~a 429 (725)
+-.. ..+.|...-.| |+-.++ ....++..-|+.+.+.+.+ ++|+.
T Consensus 212 l~~~-s~~dp~af~~~G~l~~aNrGi~ef~E~~----------K~~~~~L~~LL~~tqEg~ik~~~~~~~i~~D~liiAh 280 (358)
T PF08298_consen 212 LAEY-SESDPRAFSYSGELNRANRGIMEFVEML----------KAPIEFLHPLLTATQEGNIKVDEDFGMIPFDELIIAH 280 (358)
T ss_pred Hhhh-ccCCCeeEeeccHHHHhhchhHHHHHHh----------cCcHHHHHHHhcchhcCceecCCcccccccceeEEec
Q ss_pred ccchhhhhhhc--ccHHHHcccceEEecCC-CHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHh
Q 004878 430 TTQDEHRTQFE--KDKALARRFQPVLISEP-SQEDAVRILLGLREKYEAHH-NCKFTLEAINAAVHLS 493 (725)
Q Consensus 430 t~~~~~~~~~~--ld~~L~~Rf~~I~i~~P-s~ee~~~IL~~~~~~~~~~~-~~~i~~~~l~~l~~~s 493 (725)
+|..+|.++.. ..++|.+|+..|.|+.. +..+-.+|.+.++.+. .. +..+.+.+++.++..+
T Consensus 281 sNe~E~~~f~~~~~~eAf~DRi~~I~VPY~L~~s~E~kIY~k~~~~s--~l~~~h~aP~~L~~aA~f~ 346 (358)
T PF08298_consen 281 SNEEEYNKFKNNKNNEAFKDRIEVIKVPYCLRVSEEVKIYEKLIGKS--DLRDAHIAPHTLEMAARFA 346 (358)
T ss_pred CCHHHHHHHhccccchhhhhheEEEeccccCCHHHHHHHHHHHhhhc--cccccccCchHHHHHHHHH
No 369
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.78 E-value=7.8e-05 Score=76.71 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=75.4
Q ss_pred hhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHhh
Q 004878 417 PSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE--AHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 417 ~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~--~~~~~~i~~~~l~~l~~~s~ 494 (725)
+.+++|.+++||+||.++ ++.++++|++|++++.+.+++.++...+|++.+.... ....+.+++++++.++..++
T Consensus 2 p~vE~G~i~LIGATTENP---~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~ 78 (300)
T PRK14700 2 PYVESGKIILIGATTENP---TYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNE 78 (300)
T ss_pred CCccCCcEEEEeecCCCc---cceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcC
Confidence 568899999999999998 7799999999999999999999999999998776532 22357899999999999998
Q ss_pred hhcccCCCchhHHHHHHHHHH
Q 004878 495 RYISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 495 ~~i~~r~lp~~ai~ll~~a~~ 515 (725)
+-.. .+++.|+.++.
T Consensus 79 GDaR------~aLN~LE~a~~ 93 (300)
T PRK14700 79 GDCR------KILNLLERMFL 93 (300)
T ss_pred CHHH------HHHHHHHHHHh
Confidence 7643 66777776553
No 370
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=5.4e-05 Score=85.82 Aligned_cols=48 Identities=31% Similarity=0.544 Sum_probs=40.1
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.++||+.++..+...+...+. | .++||+||+|||||++|+++|+.++.
T Consensus 17 dIIGQe~iv~~L~~aI~~~rl----~----hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNKL----T----HAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCCC----C----ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 388999999999888765432 1 27999999999999999999999853
No 371
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.77 E-value=0.00017 Score=74.51 Aligned_cols=157 Identities=14% Similarity=0.205 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH
Q 004878 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379 (725)
Q Consensus 300 ~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~ 379 (725)
-++..+|. ..+.|.||+|.+|+||+++++..+... +..++++.+..- -...+|.+.++.++..+-
T Consensus 21 ~ri~RvL~-~~~Gh~LLvG~~GsGr~sl~rLaa~i~----------~~~~~~i~~~~~----y~~~~f~~dLk~~~~~ag 85 (268)
T PF12780_consen 21 ARISRVLS-QPRGHALLVGVGGSGRQSLARLAAFIC----------GYEVFQIEITKG----YSIKDFKEDLKKALQKAG 85 (268)
T ss_dssp HHHHHHHC-STTEEEEEECTTTSCHHHHHHHHHHHT----------TEEEE-TTTSTT----THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCCeEEecCCCccHHHHHHHHHHHh----------ccceEEEEeeCC----cCHHHHHHHHHHHHHHHh
Confidence 34444555 456899999999999999999666544 778887764321 124467788888877665
Q ss_pred -hcCCeEEEEccch-----------hhhhCCCCC-CCCCCCcHHHHHHHhhhhc-------------------CCCeEEE
Q 004878 380 -KSGDVILFIDEVH-----------TLIGSGTVG-RGNKGTGLDISNLLKPSLG-------------------RGELQCI 427 (725)
Q Consensus 380 -~~~~~IL~IDEid-----------~l~~~~~~~-~~~~~~~~~~~~~L~~~l~-------------------~~~v~vI 427 (725)
++.+++++|+|-+ .|+.+|... --..+.-..+.+.++.... +..+.||
T Consensus 86 ~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHiv 165 (268)
T PF12780_consen 86 IKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNLHIV 165 (268)
T ss_dssp CS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCEEEE
T ss_pred ccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhheeEE
Confidence 3468888887754 222333210 0000111112222221111 2334444
Q ss_pred Eeccc--hhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHH
Q 004878 428 ASTTQ--DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE 471 (725)
Q Consensus 428 ~at~~--~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~ 471 (725)
.+.++ +.++......|+|.+++....+.+++.+.+..+-...++
T Consensus 166 l~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~ 211 (268)
T PF12780_consen 166 LCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLS 211 (268)
T ss_dssp EEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCC
T ss_pred EEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHH
Confidence 43332 334444555677777777777777777776666555444
No 372
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=4.6e-05 Score=86.81 Aligned_cols=47 Identities=43% Similarity=0.604 Sum_probs=39.9
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
|+||+.++..|.+.+...+. . ..+||+||||||||++|+++|+.++.
T Consensus 18 IiGQe~v~~~L~~ai~~~ri---~-----ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 18 VAGQETVKAILSRAAQENRV---A-----PAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred hcCCHHHHHHHHHHHHcCCC---C-----ceEEEECCCCCCHHHHHHHHHHhccc
Confidence 78999999999988875432 1 28999999999999999999999964
No 373
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=2.4e-05 Score=87.89 Aligned_cols=46 Identities=30% Similarity=0.428 Sum_probs=39.4
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
++||+.++..+..++...+. + ..+||+||||||||++|+++|+.+.
T Consensus 23 liGq~~vv~~L~~ai~~~ri----~----~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 23 LQGQEVLVKVLSYTILNDRL----A----GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred hcCcHHHHHHHHHHHHcCCC----C----ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 89999999999888765432 1 3899999999999999999999984
No 374
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=4.4e-05 Score=87.52 Aligned_cols=47 Identities=36% Similarity=0.615 Sum_probs=40.3
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.|+||+.++..+.+.+...+. + ..+||+||+|||||++|+++|+.++
T Consensus 17 dviGQe~vv~~L~~~l~~~rl----~----ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQRL----H----HAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999998876542 1 2789999999999999999999985
No 375
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=5e-05 Score=87.00 Aligned_cols=48 Identities=35% Similarity=0.558 Sum_probs=40.6
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.++..|...+...+. ...+||+||+|||||++|+++|+.++.
T Consensus 17 dIIGQe~vv~~L~~ai~~~rl--------~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGRL--------HHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 389999999999988875431 237999999999999999999999854
No 376
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.76 E-value=4.8e-05 Score=81.42 Aligned_cols=60 Identities=37% Similarity=0.632 Sum_probs=46.4
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC--CceEEecccCCc
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--SSMLRLDMSEYM 699 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~--~~lIrid~sE~~ 699 (725)
++|++++++.+...++... .| .+||+||||||||++|+++++.+++.+ .+++.++.++-.
T Consensus 19 ~~g~~~~~~~l~~~i~~~~----~~-----~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEKN----MP-----HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred hcCcHHHHHHHHHHHhCCC----CC-----eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 7799999999888775321 11 589999999999999999999987654 356777665543
No 377
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.73 E-value=3.8e-05 Score=82.20 Aligned_cols=56 Identities=27% Similarity=0.337 Sum_probs=45.0
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE 697 (725)
++||+++++.+...+...+ .| ..+||+||||+|||++|+++++.+ +..++.++.++
T Consensus 23 ~~~~~~~~~~l~~~~~~~~----~~----~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~ 78 (316)
T PHA02544 23 CILPAADKETFKSIVKKGR----IP----NMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD 78 (316)
T ss_pred hcCcHHHHHHHHHHHhcCC----CC----eEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc
Confidence 8999999999888776322 12 266679999999999999999997 45688888876
No 378
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00072 Score=67.41 Aligned_cols=149 Identities=9% Similarity=0.034 Sum_probs=95.8
Q ss_pred HHHHHHHhcCCCC-CceEEcCCC-ChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHH
Q 004878 300 QRIIQILCRRTKN-NPILLGESG-VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377 (725)
Q Consensus 300 ~~l~~~L~~~~~~-~iLL~Gp~G-~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~ 377 (725)
..+...+...+-. ..||.|..+ +||..++.-+++.+...+.+. .....++.+....-. +.....--.+.++.+.+.
T Consensus 3 ~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~-~~HPD~~~I~pe~~~-~~~~~~I~IdqIReL~~~ 80 (263)
T PRK06581 3 ERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPL-ENNPDYHFIARETSA-TSNAKNISIEQIRKLQDF 80 (263)
T ss_pred HHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCccc-CCCCCEEEEeccccc-cccCCcccHHHHHHHHHH
Confidence 4556666665444 468889997 999999999888876543321 112334443321100 000000113345565555
Q ss_pred HH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccchhhhhhhcccHHHHcccce
Q 004878 378 IQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQP 451 (725)
Q Consensus 378 ~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~~~~~~~~ld~~L~~Rf~~ 451 (725)
+. .++.-|++|+++|.+ ...+.|.|+..+|.+ .+.+|..|+..+ .+.|.+++||+.
T Consensus 81 l~~~p~~g~~KViII~~ae~m-------------t~~AANALLKtLEEPP~~t~fILit~~~~-----~LLpTIrSRCq~ 142 (263)
T PRK06581 81 LSKTSAISGYKVAIIYSAELM-------------NLNAANSCLKILEDAPKNSYIFLITSRAA-----SIISTIRSRCFK 142 (263)
T ss_pred HhhCcccCCcEEEEEechHHh-------------CHHHHHHHHHhhcCCCCCeEEEEEeCChh-----hCchhHhhceEE
Confidence 53 245679999999999 557899999999964 356666555554 688999999999
Q ss_pred EEecCCCHHHHHHHHHH
Q 004878 452 VLISEPSQEDAVRILLG 468 (725)
Q Consensus 452 I~i~~Ps~ee~~~IL~~ 468 (725)
+.+..|....-.+....
T Consensus 143 i~~~~p~~~~~~e~~~~ 159 (263)
T PRK06581 143 INVRSSILHAYNELYSQ 159 (263)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 99999988665555443
No 379
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.73 E-value=2.5e-05 Score=75.14 Aligned_cols=134 Identities=17% Similarity=0.252 Sum_probs=65.2
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHhcCCCc--c------cCC----CeEEEeehhh--hhccc-----cccchHH---HH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPV--F------LLS----KRIMSLDMGL--LMAGA-----KERGELE---AR 370 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~~~~p~--~------l~~----~~l~~ld~~~--l~~g~-----~~~g~~~---~~ 370 (725)
|++|+|+||+||||+++.+...+.....+. + -.+ ..++.+.-.. ..+.. ...|.+. +.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 589999999999999999999985432221 0 011 1222221000 00000 0111111 11
Q ss_pred HH----HHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHH
Q 004878 371 VT----TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (725)
Q Consensus 371 l~----~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~ 446 (725)
+. .++..+. ....+++||||..+- -....+.+.+..+++ +...+|++..... ....-..+.
T Consensus 81 fe~~~~~~L~~~~-~~~~liviDEIG~mE----------l~~~~F~~~v~~~l~-s~~~vi~vv~~~~---~~~~l~~i~ 145 (168)
T PF03266_consen 81 FEEIGLPALRNAL-SSSDLIVIDEIGKME----------LKSPGFREAVEKLLD-SNKPVIGVVHKRS---DNPFLEEIK 145 (168)
T ss_dssp HHCCCCCCCHHHH-HCCHEEEE---STTC----------CC-CHHHHHHHHHHC-TTSEEEEE--SS-----SCCHHHHH
T ss_pred HHHHHHHHHHhhc-CCCCEEEEeccchhh----------hcCHHHHHHHHHHHc-CCCcEEEEEecCC---CcHHHHHHH
Confidence 11 1122211 345699999999982 234567888888888 5566777655431 113446677
Q ss_pred cc--cceEEecCCCHHH
Q 004878 447 RR--FQPVLISEPSQED 461 (725)
Q Consensus 447 ~R--f~~I~i~~Ps~ee 461 (725)
+| +..+++..-+.+.
T Consensus 146 ~~~~~~i~~vt~~NRd~ 162 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDA 162 (168)
T ss_dssp TTTTSEEEE--TTTCCC
T ss_pred hCCCcEEEEeChhHHhh
Confidence 77 4566676655443
No 380
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.71 E-value=8.2e-05 Score=85.47 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=63.4
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li 708 (725)
..++|++.++..+...+++... . + ..||++|++|||||++|++|.......+.+||.||++.+.+...-+.|+
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~-~-~-----~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lf 268 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVAR-S-N-----STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELF 268 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhC-c-C-----CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHc
Confidence 4588999999888877766531 1 1 2789999999999999999999876667899999999998876678888
Q ss_pred cCCCc
Q 004878 709 GSPPG 713 (725)
Q Consensus 709 G~ppg 713 (725)
|..+|
T Consensus 269 g~~~~ 273 (534)
T TIGR01817 269 GHEKG 273 (534)
T ss_pred CCCCC
Confidence 87655
No 381
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=2e-05 Score=85.25 Aligned_cols=56 Identities=34% Similarity=0.495 Sum_probs=42.7
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhH
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTV 704 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~v 704 (725)
|+||+.|+.++.-+-.-.. ++||+||||||||++|+-+...| =-+..+|++|-..+
T Consensus 181 V~GQ~~AKrAleiAAAGgH-----------nLl~~GpPGtGKTmla~Rl~~lL-------Ppls~~E~lE~s~I 236 (490)
T COG0606 181 VKGQEQAKRALEIAAAGGH-----------NLLLVGPPGTGKTMLASRLPGLL-------PPLSIPEALEVSAI 236 (490)
T ss_pred hcCcHHHHHHHHHHHhcCC-----------cEEEecCCCCchHHhhhhhcccC-------CCCChHHHHHHHHH
Confidence 9999999998876544332 89999999999999999998876 22455666664333
No 382
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=6.8e-05 Score=86.71 Aligned_cols=47 Identities=40% Similarity=0.649 Sum_probs=39.8
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.|+||+.+++.+.+.+...+. + ..+||+||||||||++|+++|+.++
T Consensus 17 eiiGq~~~~~~L~~~i~~~~i----~----~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGRV----A----HAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCCC----c----eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999888875442 1 2689999999999999999999985
No 383
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.69 E-value=0.0011 Score=77.12 Aligned_cols=60 Identities=25% Similarity=0.439 Sum_probs=45.2
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc-------CCCCceEEecccCC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF-------GSESSMLRLDMSEY 698 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf-------g~~~~lIrid~sE~ 698 (725)
.++||+.++..+...+... .+ ..++|+||||||||++|+++.+..- ..+..|+.+|++.+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~-----~~----~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP-----FP----QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hceeCcHHHHHHHHHHhcC-----CC----CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 4889999998875544211 11 2799999999999999999988752 12457999998876
No 384
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.67 E-value=5.7e-05 Score=76.52 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=36.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|+||||||||++|+++++.++..+..++.++.+++.++
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA 80 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh
Confidence 89999999999999999999998766667899998887654
No 385
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=9.2e-05 Score=80.97 Aligned_cols=48 Identities=38% Similarity=0.634 Sum_probs=40.1
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.++||+.+++.+...++..+. | .++|||||||+|||++|+++|+.++.
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~----~----~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHL----A----QALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 388999999999888875321 1 38999999999999999999999865
No 386
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.66 E-value=2.1e-05 Score=76.44 Aligned_cols=42 Identities=29% Similarity=0.468 Sum_probs=37.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
+++|+||||||||.||.+||+++...+...+.+++++++++.
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 899999999999999999999998888889999999988763
No 387
>PRK06893 DNA replication initiation factor; Validated
Probab=97.65 E-value=6.5e-05 Score=76.33 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s 696 (725)
.++||||||||||.|+.++|+++...+.+.+.+++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 689999999999999999999976555556666664
No 388
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.64 E-value=5.1e-05 Score=69.71 Aligned_cols=41 Identities=32% Similarity=0.504 Sum_probs=34.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|+||||||||++++.||..++.....++.++++.....
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc
Confidence 79999999999999999999998554335899999877654
No 389
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.64 E-value=3.4e-05 Score=70.21 Aligned_cols=46 Identities=28% Similarity=0.454 Sum_probs=37.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
.+|+.|.||||||++++.||+.+ .+-.|++|.|.... -=|-||+|+
T Consensus 9 NILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vkEn---------~l~~gyDE~ 54 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVKEN---------NLYEGYDEE 54 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh-----CCceEehhhHHhhh---------cchhccccc
Confidence 79999999999999999999775 46778888776442 237888876
No 390
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.64 E-value=6.1e-05 Score=73.56 Aligned_cols=60 Identities=28% Similarity=0.526 Sum_probs=46.8
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC--CCceEEecccCCc
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYM 699 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~--~~~lIrid~sE~~ 699 (725)
++|.++.+++++...+... -| +++|.||||||||+-+.+||++|.|. ...++-+|-|+=-
T Consensus 29 IVGNe~tv~rl~via~~gn----mP-----~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIAKEGN----MP-----NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred hhCCHHHHHHHHHHHHcCC----CC-----ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 8899999988876554332 23 79999999999999999999999984 4556777766543
No 391
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.64 E-value=0.0039 Score=68.01 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=74.5
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc---C---CCeEEEEeccchhhh---hhhcccHHHHccc---
Q 004878 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---R---GELQCIASTTQDEHR---TQFEKDKALARRF--- 449 (725)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---~---~~v~vI~at~~~~~~---~~~~ld~~L~~Rf--- 449 (725)
++.+|+|||++.+..-... .......+.|++++. . ..+.+|.+.|+.-+. .=+.--++|.+|+
T Consensus 239 ~GLlI~lDE~e~l~kl~~~-----~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~ 313 (416)
T PF10923_consen 239 KGLLILLDELENLYKLRND-----QAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEE 313 (416)
T ss_pred CceEEEEechHHHHhcCCh-----HHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcc
Confidence 4679999999999754322 113455666766654 2 346777777776441 0011124444432
Q ss_pred ------------ceEEecCCCHHHHHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHhhhhccc
Q 004878 450 ------------QPVLISEPSQEDAVRILLGLREKYEAHHN--CKFTLEAINAAVHLSARYISD 499 (725)
Q Consensus 450 ------------~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~--~~i~~~~l~~l~~~s~~~i~~ 499 (725)
.+|.+++.+.++...++..+..-|....+ ..++++.+..+++.+...+..
T Consensus 314 ~~~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~r~G~ 377 (416)
T PF10923_consen 314 FFADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVAGRLGG 377 (416)
T ss_pred ccccccccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhccCc
Confidence 15788888999999999998887765554 478999999998877766543
No 392
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.64 E-value=6.9e-05 Score=76.38 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=36.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+++|+||||||||.||.+||+.+...+..++.++.+++++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 89999999999999999999998766778888999888753
No 393
>PRK08181 transposase; Validated
Probab=97.62 E-value=5.6e-05 Score=78.19 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=37.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
+++|+||||||||.||.+||+.+...+..++.++++++++..
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 799999999999999999999887767778889999888754
No 394
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00012 Score=82.45 Aligned_cols=47 Identities=45% Similarity=0.656 Sum_probs=40.0
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.++||+.++..+...+...+. ...+|||||+|||||++|+++|+.++
T Consensus 17 diiGq~~i~~~L~~~i~~~~i--------~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRV--------SHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HccChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 388999999999988876432 12689999999999999999999986
No 395
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.61 E-value=3e-05 Score=86.14 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE 697 (725)
.+=++|++|||||++||+|+..+=. ...-|.+++.+
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~ 354 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQD 354 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcc
Confidence 6779999999999999999999744 34467777766
No 396
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.61 E-value=6.1e-05 Score=86.99 Aligned_cols=53 Identities=43% Similarity=0.627 Sum_probs=44.3
Q ss_pred HHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 004878 623 LEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (725)
Q Consensus 623 l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~ 686 (725)
+.+.+...|+||+++++.+..++...+ +++|+||||||||++|+++|+.+...
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~~~-----------~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQKR-----------NVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHcCC-----------CEEEECCCCCCHHHHHHHHHHHcCch
Confidence 345667779999999999988877432 78999999999999999999998543
No 397
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.61 E-value=5.9e-05 Score=80.38 Aligned_cols=45 Identities=29% Similarity=0.478 Sum_probs=36.4
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.|+||+++++.+..+.... | .+++||+||||||||++|+++|..+
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~--~-------~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDP--G-------IGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HhCCHHHHHHHHHHHHhcc--C-------CCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3889999999876543322 1 1489999999999999999999997
No 398
>PRK08116 hypothetical protein; Validated
Probab=97.61 E-value=7e-05 Score=77.82 Aligned_cols=41 Identities=24% Similarity=0.454 Sum_probs=36.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+++|+||||||||.||.+||+.+...+..++.++.+++++.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 79999999999999999999998655667889999988764
No 399
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.60 E-value=7.5e-05 Score=78.94 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=37.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
+++|+||||||||.||.|||+++...+.....+.+++|++..
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 899999999999999999999997667778889999987653
No 400
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.60 E-value=7e-05 Score=87.76 Aligned_cols=54 Identities=33% Similarity=0.612 Sum_probs=40.0
Q ss_pred eeCcHHHHHH---HHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 004878 631 VIGQDEAVAA---ISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (725)
Q Consensus 631 v~Gq~~a~~~---i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s 696 (725)
++||+..+.. +...+...+ ..+++||||||||||++|++||+.+ +..|+.++.+
T Consensus 30 ~vGQe~ii~~~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~ 86 (725)
T PRK13341 30 FVGQDHILGEGRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAV 86 (725)
T ss_pred hcCcHHHhhhhHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhh
Confidence 7799888753 433333211 1389999999999999999999987 5677777765
No 401
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.60 E-value=7.3e-05 Score=88.27 Aligned_cols=193 Identities=16% Similarity=0.217 Sum_probs=122.9
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHHHHHHHhcC------------C---CC-CceEEcCCCChHHHHHHHHHHHHHhcCC
Q 004878 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRR------------T---KN-NPILLGESGVGKTAIAEGLAIRIVQAEV 340 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~------------~---~~-~iLL~Gp~G~GKT~la~~la~~l~~~~~ 340 (725)
..-|++++++.....+.|.......+..+|... . .. .++++||||+|||+.+...+..+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 456778888887778888777777777776553 0 01 25899999999999999999998
Q ss_pred CcccCCCeEEEeehhhhhccccccchHH-----HHHHHHH---HH--HHhcCCeEEEEccchhhhhCCCCCCCCCCCcHH
Q 004878 341 PVFLLSKRIMSLDMGLLMAGAKERGELE-----ARVTTLI---SE--IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD 410 (725)
Q Consensus 341 p~~l~~~~l~~ld~~~l~~g~~~~g~~~-----~~l~~~~---~~--~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~ 410 (725)
+..+++.|.+..-.+......+- ..+...+ .. ..+....||++||+|-+++ .. ..
T Consensus 382 -----g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~d---------Rg 446 (871)
T KOG1968|consen 382 -----GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-ED---------RG 446 (871)
T ss_pred -----ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hh---------hh
Confidence 77888887665432111000000 0011111 00 0112345899999999965 21 12
Q ss_pred HHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Q 004878 411 ISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490 (725)
Q Consensus 411 ~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~ 490 (725)
....+-.+.......+|++||... +....++.+-+..+.|..|+.+.+..-+..++. ..++.+++..++.+.
T Consensus 447 ~v~~l~~l~~ks~~Piv~~cndr~----~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~----se~~ki~~~~l~~~s 518 (871)
T KOG1968|consen 447 GVSKLSSLCKKSSRPLVCTCNDRN----LPKSRALSRACSDLRFSKPSSELIRSRIMSICK----SEGIKISDDVLEEIS 518 (871)
T ss_pred hHHHHHHHHHhccCCeEEEecCCC----CccccchhhhcceeeecCCcHHHHHhhhhhhhc----ccceecCcHHHHHHH
Confidence 333444555555667777777654 122334555445799999999988777776665 456779999999998
Q ss_pred HHhhhhc
Q 004878 491 HLSARYI 497 (725)
Q Consensus 491 ~~s~~~i 497 (725)
+++..-+
T Consensus 519 ~~~~~Di 525 (871)
T KOG1968|consen 519 KLSGGDI 525 (871)
T ss_pred HhcccCH
Confidence 8876543
No 402
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=6.1e-05 Score=86.47 Aligned_cols=47 Identities=34% Similarity=0.546 Sum_probs=40.6
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.++||+.++..+...+...+. | ..+||+||+|||||++|+++|+.++
T Consensus 25 dliGq~~~v~~L~~~~~~gri----~----ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGRI----A----QAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCCC----C----ceEEEECCCCCCHHHHHHHHHHhhC
Confidence 489999999999998875532 1 3899999999999999999999985
No 403
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.59 E-value=0.00071 Score=84.85 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=48.3
Q ss_pred hhHhhhhhhhhhhhh---hcCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 271 SALEQFCVDLTARAS---EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 271 ~~l~~~~~~l~~~~~---~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
..+++...+...+.. ...+++++|++..++++..++.. ....-+-|+|++|+||||||++++..+.
T Consensus 162 ~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 162 KMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred HHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 344544444444442 23567899999999999988764 2334567999999999999999988774
No 404
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.59 E-value=0.00011 Score=74.50 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=35.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
.++|+||||||||.||+++++.++..+..++.++..++.+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 7899999999999999999999877778899999887654
No 405
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.57 E-value=5e-05 Score=78.64 Aligned_cols=44 Identities=34% Similarity=0.639 Sum_probs=31.9
Q ss_pred eeCcHHHHHH---HHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 631 VIGQDEAVAA---ISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 631 v~Gq~~a~~~---i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
++||++++.. +...++..+ .| +++|+||||||||+||+.||..-
T Consensus 140 yvGQ~hlv~q~gllrs~ieq~~----ip-----SmIlWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIEQNR----IP-----SMILWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred hcchhhhcCcchHHHHHHHcCC----CC-----ceEEecCCCCchHHHHHHHHhhc
Confidence 6788777754 222233222 23 89999999999999999999984
No 406
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.00015 Score=81.72 Aligned_cols=47 Identities=34% Similarity=0.505 Sum_probs=40.0
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
|+||+.++..+...+...+. | ..+|||||+|||||++|+++|+.++.
T Consensus 16 iiGqe~v~~~L~~~I~~grl----~----hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 16 LIGQESVSKTLSLALDNNRL----A----HAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred ccCcHHHHHHHHHHHHcCCC----C----eeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 89999999999988865431 1 26799999999999999999999864
No 407
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.56 E-value=0.00012 Score=74.51 Aligned_cols=66 Identities=30% Similarity=0.469 Sum_probs=56.8
Q ss_pred HHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 004878 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE 687 (725)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~ 687 (725)
+..+++.|...++||--|++.|..+++--...- .|.||+ .+=|.|+|||||..+++.||+.+|-++
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~-~p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~G 138 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANP-NPRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGG 138 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC-CCCCCe-EEEecCCCCCchhHHHHHHHHHHHhcc
Confidence 566888899999999999999999998765544 388887 777999999999999999999998664
No 408
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.56 E-value=0.00018 Score=73.13 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=65.7
Q ss_pred cccccHHHHHHHHHHHhc----CCCCCc---eEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccc
Q 004878 291 PVIGRETEIQRIIQILCR----RTKNNP---ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~----~~~~~i---LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~ 363 (725)
.+.||--..+.++..+.. ..+.-+ =|+|.+||||..+++.||+.+.....-......-+-..++..-..-..+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 467776666666655543 333222 3789999999999999999886543221110111111111111111122
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc
Q 004878 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (725)
Q Consensus 364 ~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~ 420 (725)
+.++..+ +.+.+..++..++++||+|.| ...+.+.|++.+.
T Consensus 163 k~eL~~~---v~~~v~~C~rslFIFDE~DKm-------------p~gLld~lkpfLd 203 (344)
T KOG2170|consen 163 KEELKNR---VRGTVQACQRSLFIFDEVDKL-------------PPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHH---HHHHHHhcCCceEEechhhhc-------------CHhHHHHHhhhhc
Confidence 2233333 334445667889999999999 4467888888887
No 409
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00016 Score=83.52 Aligned_cols=71 Identities=30% Similarity=0.506 Sum_probs=52.7
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC----------------------CC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG----------------------SE 687 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg----------------------~~ 687 (725)
.|+||+.++..+...+...+. | ..+|||||+|+|||++|+++|+.++- ..
T Consensus 18 ~viGq~~~~~~L~~~i~~~~l----~----hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNKL----A----HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCCC----C----eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 489999999999888875431 1 26899999999999999999999851 12
Q ss_pred CceEEecccCCcchhhHhHhh
Q 004878 688 SSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 688 ~~lIrid~sE~~~k~~vs~li 708 (725)
.+++.+|++.......+-.++
T Consensus 90 ~n~~~ld~~~~~~vd~Ir~li 110 (614)
T PRK14971 90 YNIHELDAASNNSVDDIRNLI 110 (614)
T ss_pred CceEEecccccCCHHHHHHHH
Confidence 567778776544334455554
No 410
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.55 E-value=7.5e-05 Score=67.54 Aligned_cols=32 Identities=34% Similarity=0.613 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 662 iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
+++.||||+|||++|+.||+.+ + +..+++.+|
T Consensus 2 I~I~G~~gsGKST~a~~La~~~---~--~~~i~~d~~ 33 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL---G--FPVISMDDL 33 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---T--CEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH---C--CeEEEecce
Confidence 7899999999999999999997 3 455555553
No 411
>PRK10536 hypothetical protein; Provisional
Probab=97.55 E-value=0.00081 Score=68.28 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=35.9
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..+.++......+...+.. ...++++||+|||||+|+.+++...
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44566777777777777765 3588999999999999999999864
No 412
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0001 Score=79.78 Aligned_cols=49 Identities=33% Similarity=0.509 Sum_probs=42.1
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~ 686 (725)
.|+||++++..+...+...+. | ..+||+||+|+||+++|.++|+.++..
T Consensus 20 ~iiGq~~~~~~L~~~~~~~rl----~----HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGRL----H----HAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred hccChHHHHHHHHHHHHcCCC----C----ceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 389999999999988887542 1 279999999999999999999999754
No 413
>PHA02244 ATPase-like protein
Probab=97.54 E-value=0.00024 Score=75.63 Aligned_cols=57 Identities=14% Similarity=0.304 Sum_probs=40.1
Q ss_pred hcCceeCcHHHHHHHHHHH-HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 627 LKKRVIGQDEAVAAISRAV-KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 627 L~~~v~Gq~~a~~~i~~~v-~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
+....+|+..........+ ++...+. .+||+||||||||++|++||..+ +.+|++++
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In 151 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMN 151 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 3444556655555443333 3333222 68999999999999999999997 67899887
No 414
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00013 Score=76.77 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=33.6
Q ss_pred CCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 651 GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 651 gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.-+.-..|..++|||||||||||++|+-||..- +...--+-+.++
T Consensus 376 NTK~h~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDV 420 (630)
T KOG0742|consen 376 NTKKHQAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDV 420 (630)
T ss_pred ccccccchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCc
Confidence 344445566799999999999999999999983 555555555554
No 415
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.51 E-value=0.00022 Score=77.87 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=50.3
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC------CCceEEecccCCcch
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS------ESSMLRLDMSEYMER 701 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~------~~~lIrid~sE~~~k 701 (725)
+.++|.++-++.|...+...-.|-.. ..++++||||||||++++++++.+-.. ...++.+|..++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~-----~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRP-----SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCC-----CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 34788888888888887765433222 278999999999999999999876211 136888898877654
No 416
>PRK06851 hypothetical protein; Provisional
Probab=97.51 E-value=0.0035 Score=67.48 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEE
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLR 692 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIr 692 (725)
.+++.||||||||++.+.+++++-..+.....
T Consensus 216 ~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~ 247 (367)
T PRK06851 216 RYFLKGRPGTGKSTMLKKIAKAAEERGFDVEV 247 (367)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 68999999999999999999997544444433
No 417
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.50 E-value=0.00013 Score=77.72 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=38.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
+++|+||||||||.||.+||+++...+..++.+..+++++..
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 899999999999999999999998878889999999987754
No 418
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.50 E-value=0.00028 Score=70.74 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=57.4
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhc
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG 709 (725)
++|.++.++.|.......-.|... ..+||+|+.|||||+++|++.+++.+.+..+|.|+-.++.+=..+-..+.
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pa-----nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~ 102 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPA-----NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR 102 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCC-----cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh
Confidence 566777777777666666556532 38999999999999999999999988889999998887766555555544
No 419
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.00012 Score=75.43 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=37.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+++|+||||||||.||-|||+.+...+..++.+..+|++.+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 89999999999999999999999866788999999988764
No 420
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.00011 Score=84.92 Aligned_cols=48 Identities=33% Similarity=0.553 Sum_probs=40.9
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.++||+.++..+.+.+...+. . ..+||+||+|||||++|+++|+.++.
T Consensus 17 ~liGq~~i~~~L~~~l~~~rl---~-----~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNRI---A-----PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hccChHHHHHHHHHHHHcCCC---C-----ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 489999999999888876432 1 28999999999999999999999965
No 421
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.49 E-value=0.00072 Score=66.18 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.2
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHh
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
++++||||+|||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999887654
No 422
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.0005 Score=75.58 Aligned_cols=137 Identities=23% Similarity=0.279 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHH
Q 004878 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (725)
Q Consensus 297 ~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~ 376 (725)
+-+.++.+.+..... .++|+||.+|||||+++.+.+.... . ++.++..+..... -+..+.++.+.
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~---------~-~iy~~~~d~~~~~---~~l~d~~~~~~- 88 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE---------E-IIYINFDDLRLDR---IELLDLLRAYI- 88 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc---------c-eEEEEecchhcch---hhHHHHHHHHH-
Confidence 444555555555444 7899999999999999777766521 1 4444443333211 11111122221
Q ss_pred HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCe--EEEEeccchhhhhhhcccHHHHcccceEEe
Q 004878 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL--QCIASTTQDEHRTQFEKDKALARRFQPVLI 454 (725)
Q Consensus 377 ~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v--~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i 454 (725)
.+.......+|||||+.+- +-...++.+..++.. .+.+++...- .......|..|...+.+
T Consensus 89 ~~~~~~~~yifLDEIq~v~--------------~W~~~lk~l~d~~~~~v~itgsss~ll---~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 89 ELKEREKSYIFLDEIQNVP--------------DWERALKYLYDRGNLDVLITGSSSSLL---SKEISESLAGRGKDLEL 151 (398)
T ss_pred HhhccCCceEEEecccCch--------------hHHHHHHHHHccccceEEEECCchhhh---ccchhhhcCCCceeEEE
Confidence 1111244699999999881 245566777776653 4444333322 22455677789888999
Q ss_pred cCCCHHHHHHH
Q 004878 455 SEPSQEDAVRI 465 (725)
Q Consensus 455 ~~Ps~ee~~~I 465 (725)
.|.|..|....
T Consensus 152 ~PlSF~Efl~~ 162 (398)
T COG1373 152 YPLSFREFLKL 162 (398)
T ss_pred CCCCHHHHHhh
Confidence 99999987664
No 423
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.48 E-value=0.0003 Score=75.93 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=59.4
Q ss_pred cHHHHHHHHHH-HhcCCCCCceEEcCCCChHHHHHHHHHHH-HHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHH
Q 004878 295 RETEIQRIIQI-LCRRTKNNPILLGESGVGKTAIAEGLAIR-IVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVT 372 (725)
Q Consensus 295 ~~~~i~~l~~~-L~~~~~~~iLL~Gp~G~GKT~la~~la~~-l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~ 372 (725)
....+..|... -.-....|+++.||+|||||+++.+++.. .... | ....+..++... . .
T Consensus 192 ~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~s-------G---~f~T~a~Lf~~L------~---~ 252 (449)
T TIGR02688 192 ARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILIS-------G---GTITVAKLFYNI------S---T 252 (449)
T ss_pred hHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHc-------C---CcCcHHHHHHHH------H---H
Confidence 34444444444 12346789999999999999999999887 3211 1 122233333111 0 1
Q ss_pred HHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC
Q 004878 373 TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE 423 (725)
Q Consensus 373 ~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 423 (725)
..+..+ ....+|+|||+..+.- ....+..+.|+.+|+++.
T Consensus 253 ~~lg~v--~~~DlLI~DEvgylp~---------~~~~~~v~imK~yMesg~ 292 (449)
T TIGR02688 253 RQIGLV--GRWDVVAFDEVATLKF---------AKPKELIGILKNYMESGS 292 (449)
T ss_pred HHHhhh--ccCCEEEEEcCCCCcC---------CchHHHHHHHHHHHHhCc
Confidence 122222 2345999999998631 234578889999998654
No 424
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.46 E-value=0.00046 Score=74.47 Aligned_cols=204 Identities=17% Similarity=0.216 Sum_probs=117.5
Q ss_pred cccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh
Q 004878 291 PVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~ 358 (725)
++.|.++..+.|.-+|-- +..-||+|.|.||+-|+-|.+.+.+...++.... .+|
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTT-GrG------------ 409 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTT-GRG------------ 409 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceec-CCC------------
Confidence 688999988888776643 2234789999999999999999987664432110 001
Q ss_pred ccccccchHHHHHHHHH-HHH-------HhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhh---hhc-------
Q 004878 359 AGAKERGELEARVTTLI-SEI-------QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP---SLG------- 420 (725)
Q Consensus 359 ~g~~~~g~~~~~l~~~~-~~~-------~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~---~l~------- 420 (725)
++..|-....+++-+ .++ --..+.|-+|||+|.+...... .+-..+.+ .+.
T Consensus 410 --SSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt---------AIHEVMEQQTISIaKAGI~Tt 478 (721)
T KOG0482|consen 410 --SSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT---------AIHEVMEQQTISIAKAGINTT 478 (721)
T ss_pred --CCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH---------HHHHHHHhhhhhhhhhccccc
Confidence 111111111111100 000 0023568899999999543211 11112111 001
Q ss_pred -CCCeEEEEeccchh--------hhhhhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHH--HhccCC---CCCHH
Q 004878 421 -RGELQCIASTTQDE--------HRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKY--EAHHNC---KFTLE 484 (725)
Q Consensus 421 -~~~v~vI~at~~~~--------~~~~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~--~~~~~~---~i~~~ 484 (725)
+.+..++++.|+.- ....+.+..+|.+||+ .+..+.|+.+.-..+-+++..-. +.+... .++.+
T Consensus 479 LNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~ 558 (721)
T KOG0482|consen 479 LNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPN 558 (721)
T ss_pred hhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHH
Confidence 22345667776531 1245678899999996 46667887766555555543222 111111 36788
Q ss_pred HHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHh
Q 004878 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520 (725)
Q Consensus 485 ~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~ 520 (725)
.+...+.+|.++-+ .+|....+-+..|....+-+
T Consensus 559 ~mR~yI~~ak~~~P--~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 559 LMRRYISLAKRKNP--VVPEALADYITGAYVELRRE 592 (721)
T ss_pred HHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHH
Confidence 88888888888743 66778888887777665544
No 425
>PRK06526 transposase; Provisional
Probab=97.45 E-value=5.7e-05 Score=77.67 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=38.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs 705 (725)
+++|+||||||||.||.+|+..+...+...+.+.++++++....+
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~ 144 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAA 144 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHH
Confidence 899999999999999999999987767777778888887765443
No 426
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0001 Score=75.39 Aligned_cols=23 Identities=48% Similarity=0.748 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
-+||.||||||||+|.||||+.|
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhh
Confidence 78999999999999999999997
No 427
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.44 E-value=0.0013 Score=71.13 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=67.4
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe--ehhhhhccccccchHHHHHHHHHHHHHhcCCeEE
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL--DMGLLMAGAKERGELEARVTTLISEIQKSGDVIL 386 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l--d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL 386 (725)
..+.+++|+|+.|+|||.|+-.+...+... .....++..+ ++..-+.... +. ..-+..+.+.+... ..+|
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~----~k~R~HFh~Fm~~vh~~l~~~~--~~-~~~l~~va~~l~~~-~~lL 131 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIK----RKRRVHFHEFMLDVHSRLHQLR--GQ-DDPLPQVADELAKE-SRLL 131 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcc----ccccccccHHHHHHHHHHHHHh--CC-CccHHHHHHHHHhc-CCEE
Confidence 357889999999999999999998876321 0001111111 1111110000 00 01133333333322 3499
Q ss_pred EEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhh---h------hhcccHHHHcccceEEecCC
Q 004878 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR---T------QFEKDKALARRFQPVLISEP 457 (725)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~---~------~~~ld~~L~~Rf~~I~i~~P 457 (725)
++||++.-= -...+-+..+|..++ ...+++|+|+|..+-. . +...-..|.++|.++.++.+
T Consensus 132 cfDEF~V~D---------iaDAmil~rLf~~l~-~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 132 CFDEFQVTD---------IADAMILKRLFEALF-KRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred EEeeeeccc---------hhHHHHHHHHHHHHH-HCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 999998650 011222233344444 5568899998876511 0 00111345557777888766
No 428
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.00017 Score=76.57 Aligned_cols=51 Identities=31% Similarity=0.547 Sum_probs=43.9
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE 687 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~ 687 (725)
..|+||+++++.+...+...+. | ..+||+||+|+||+++|+++|+.+++.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl----~----ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRI----A----PAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCC----C----ceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4589999999999999877653 1 2899999999999999999999998754
No 429
>PHA02774 E1; Provisional
Probab=97.42 E-value=0.00074 Score=75.56 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCC-CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHH
Q 004878 298 EIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (725)
Q Consensus 298 ~i~~l~~~L~~~~-~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~ 376 (725)
-+..|..++.... +++++|+||||||||+++.+|++.+. +..+-.++.. ..|. ++
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~---------G~vi~fvN~~---------s~Fw------Lq 475 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK---------GKVISFVNSK---------SHFW------LQ 475 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC---------CCEEEEEECc---------cccc------cc
Confidence 4455666665533 57899999999999999999999872 3344444421 1111 22
Q ss_pred HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC---------------eEEEEeccchhhhhhhcc
Q 004878 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE---------------LQCIASTTQDEHRTQFEK 441 (725)
Q Consensus 377 ~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~---------------v~vI~at~~~~~~~~~~l 441 (725)
.+.. -.|++|||+-.-+ ..-+...|+.+|.... ..+|.|||.+.... ..
T Consensus 476 pl~d--~ki~vlDD~t~~~------------w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~--~~ 539 (613)
T PHA02774 476 PLAD--AKIALLDDATHPC------------WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAE--DR 539 (613)
T ss_pred hhcc--CCEEEEecCcchH------------HHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccc--hh
Confidence 2222 2389999992111 1123335666665432 36788888654111 12
Q ss_pred cHHHHcccceEEecCC
Q 004878 442 DKALARRFQPVLISEP 457 (725)
Q Consensus 442 d~~L~~Rf~~I~i~~P 457 (725)
-..|.+|+..+.|+.|
T Consensus 540 ~~yL~sRi~~f~F~n~ 555 (613)
T PHA02774 540 YKYLHSRITVFEFPNP 555 (613)
T ss_pred hHHhhhhEEEEECCCC
Confidence 2456668877777765
No 430
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.41 E-value=0.0025 Score=78.31 Aligned_cols=170 Identities=12% Similarity=0.132 Sum_probs=90.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh-----------hh
Q 004878 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL-----------LM 358 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~-----------l~ 358 (725)
..+|-|+..++++... ...+-++|+||+|.||||++..++... + .+.++++.. +.
T Consensus 14 ~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----------~-~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 14 HNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----------N-NLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred cccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----------C-CeEEEecCcccCCHHHHHHHHH
Confidence 4567777666666432 234457899999999999999887543 1 222222211 00
Q ss_pred c-----ccc------------ccchHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc
Q 004878 359 A-----GAK------------ERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (725)
Q Consensus 359 ~-----g~~------------~~g~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~ 420 (725)
. ... ........+..++..+.. ..+.+|+|||+|.+- ...+...|..++.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~------------~~~~~~~l~~l~~ 147 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLIT------------NPEIHEAMRFFLR 147 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCC------------ChHHHHHHHHHHH
Confidence 0 000 001122234445555544 578999999999982 1233444544444
Q ss_pred C--CCeEEEEeccchhhhhhhcccHHHH--cccceEEec--CCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhh
Q 004878 421 R--GELQCIASTTQDEHRTQFEKDKALA--RRFQPVLIS--EPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 421 ~--~~v~vI~at~~~~~~~~~~ld~~L~--~Rf~~I~i~--~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~ 494 (725)
. +.+.+|.++.... -+.+ ..+. ..+..|... ..+.+|...++... .+..++++.+..+.+.+.
T Consensus 148 ~~~~~~~lv~~sR~~~---~~~~-~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~-------~~~~~~~~~~~~l~~~t~ 216 (903)
T PRK04841 148 HQPENLTLVVLSRNLP---PLGI-ANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR-------LSSPIEAAESSRLCDDVE 216 (903)
T ss_pred hCCCCeEEEEEeCCCC---CCch-HhHHhcCcceecCHHhCCCCHHHHHHHHHhc-------cCCCCCHHHHHHHHHHhC
Confidence 2 4455544443321 0111 1222 222233333 66888887777432 244567777777777766
Q ss_pred hh
Q 004878 495 RY 496 (725)
Q Consensus 495 ~~ 496 (725)
++
T Consensus 217 Gw 218 (903)
T PRK04841 217 GW 218 (903)
T ss_pred Ch
Confidence 54
No 431
>PTZ00202 tuzin; Provisional
Probab=97.40 E-value=0.002 Score=69.56 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=40.2
Q ss_pred cCCCcccccHHHHHHHHHHHhcCC---CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 287 ELIDPVIGRETEIQRIIQILCRRT---KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~~~---~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
....+++||++++.+|..+|.... +.-++|+|++|+|||++++.+...+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 345689999999999999997522 2345799999999999999999776
No 432
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.39 E-value=0.00016 Score=83.34 Aligned_cols=64 Identities=34% Similarity=0.480 Sum_probs=47.8
Q ss_pred HhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC-CceEEecccCCcc
Q 004878 626 QLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE-SSMLRLDMSEYME 700 (725)
Q Consensus 626 ~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~-~~lIrid~sE~~~ 700 (725)
.+.+.|+||+++++.+..++...+ .++|+||||||||++|+++|+.++... ..++.+--|+...
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~~-----------~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~~~ 92 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQRR-----------HVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPN 92 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhCC-----------eEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCcch
Confidence 455569999999999988776432 799999999999999999999986542 3344444454443
No 433
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.38 E-value=0.00047 Score=73.91 Aligned_cols=76 Identities=25% Similarity=0.349 Sum_probs=56.1
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ 710 (725)
++|+..++..+...+.+... .. ..||++|++||||+.+|++|-..-...+.+|+.||+..+.+...-+.|+|.
T Consensus 1 liG~S~~m~~~~~~~~~~a~-~~------~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-LD------RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-CC------CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 35777777777666655431 11 278999999999999999998775445679999999988765555677775
Q ss_pred CCc
Q 004878 711 PPG 713 (725)
Q Consensus 711 ppg 713 (725)
-.|
T Consensus 74 ~~g 76 (329)
T TIGR02974 74 EAG 76 (329)
T ss_pred ccc
Confidence 443
No 434
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.38 E-value=0.00029 Score=71.01 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=81.9
Q ss_pred ccHHHHHHHHHHHhc---CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-------cc
Q 004878 294 GRETEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-------KE 363 (725)
Q Consensus 294 G~~~~i~~l~~~L~~---~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~-------~~ 363 (725)
-+....+++++.+.+ +...++||.||.|.||+.|++.+-..-... . . ..-++++++|..+-..+ ..
T Consensus 188 trnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~ar-h--q-~sg~fvevncatlrgd~amsalfghv 263 (531)
T COG4650 188 TRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQAR-H--Q-FSGAFVEVNCATLRGDTAMSALFGHV 263 (531)
T ss_pred ccChHHHHHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHH-H--h-cCCceEEEeeeeecCchHHHHHHhhh
Confidence 344555555554433 566789999999999999999876432111 0 0 14467788886654211 11
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------------eEEEEec
Q 004878 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIAST 430 (725)
Q Consensus 364 ~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~at 430 (725)
.|.|...-..--..++...+.+||+|||..| +.+-+.+|++.++... +.+|+.|
T Consensus 264 kgaftga~~~r~gllrsadggmlfldeigel-------------gadeqamllkaieekrf~pfgsdr~v~sdfqliagt 330 (531)
T COG4650 264 KGAFTGARESREGLLRSADGGMLFLDEIGEL-------------GADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGT 330 (531)
T ss_pred ccccccchhhhhhhhccCCCceEehHhhhhc-------------CccHHHHHHHHHHhhccCCCCCccccccchHHhhhh
Confidence 1211111111111122345789999999988 2344566766666433 3455544
Q ss_pred cchhhhhhh---cccHHHHcccceEEecCCCHHHHHH
Q 004878 431 TQDEHRTQF---EKDKALARRFQPVLISEPSQEDAVR 464 (725)
Q Consensus 431 ~~~~~~~~~---~ld~~L~~Rf~~I~i~~Ps~ee~~~ 464 (725)
-.+ .++.. .....|..|.....|+.|...++.+
T Consensus 331 vrd-lrq~vaeg~fredl~arinlwtf~lpgl~qr~e 366 (531)
T COG4650 331 VRD-LRQLVAEGKFREDLYARINLWTFTLPGLRQRQE 366 (531)
T ss_pred HHH-HHHHHhccchHHHHHHhhheeeeeccccccCcc
Confidence 332 22211 1123344455566677776555444
No 435
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.37 E-value=0.0016 Score=69.93 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.6
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
..+...+|+||+|||||+|++.+++.+..
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 55667899999999999999999998865
No 436
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.37 E-value=0.0003 Score=67.34 Aligned_cols=48 Identities=38% Similarity=0.679 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q 004878 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES 688 (725)
Q Consensus 633 Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~ 688 (725)
||+++++.+...+...+. | ..+||+||+|+||+++|+++|+.+++.+.
T Consensus 1 gq~~~~~~L~~~~~~~~l----~----ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL----P----HALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred CcHHHHHHHHHHHHcCCc----c----eeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 889999999888876542 2 27899999999999999999999988653
No 437
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.37 E-value=0.00091 Score=66.91 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=62.2
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-------cc--------------cccchHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------GA--------------KERGELEA 369 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-------g~--------------~~~g~~~~ 369 (725)
+.-++|+||||+|||+++..++...... +.++++++...+.. .. ....+...
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-------g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-------GKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 3446899999999999999998876432 55677777654100 00 00011122
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHH---HHHHHhhhhcCCCeEEEEec
Q 004878 370 RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD---ISNLLKPSLGRGELQCIAST 430 (725)
Q Consensus 370 ~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~---~~~~L~~~l~~~~v~vI~at 430 (725)
.+..+.+.+....+.+|+||-+..++.....+..+ ..... ....|..+..+..+.+|.+.
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~-~~~~~l~~~~~~L~~~~~~~~v~vl~t~ 147 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRI-SRNRELARQLTLLLSLARKKNLAVVITN 147 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccH-HHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 24444444555567899999999886422110000 00112 22334555566667777653
No 438
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.36 E-value=0.00047 Score=76.17 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=49.2
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC--CCceEEecccCCcchh
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERH 702 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~--~~~lIrid~sE~~~k~ 702 (725)
.++|.++-++.|...+...-.|...+ .++++||||||||++++.+++.+-.. +..++.+|..++...+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~-----~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPL-----NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCC-----eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 46677777777777775543332222 78999999999999999999987322 2468899988776543
No 439
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.35 E-value=0.00084 Score=59.43 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=22.0
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHh
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
|.|+|+||+|||++++.|+..+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999865
No 440
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.35 E-value=0.00057 Score=61.38 Aligned_cols=48 Identities=13% Similarity=0.319 Sum_probs=35.7
Q ss_pred cccccHHHHHHHHHHHhc----C-CCCCce--EEcCCCChHHHHHHHHHHHHHhc
Q 004878 291 PVIGRETEIQRIIQILCR----R-TKNNPI--LLGESGVGKTAIAEGLAIRIVQA 338 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~----~-~~~~iL--L~Gp~G~GKT~la~~la~~l~~~ 338 (725)
.+.||.-..+.+...+.. . ...+++ |.|++|||||.+++.||+.+...
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 578988777777666544 2 222333 78999999999999999998654
No 441
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.00037 Score=74.66 Aligned_cols=50 Identities=36% Similarity=0.468 Sum_probs=34.9
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE 687 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~ 687 (725)
++++++++..+........ +-| ..+||+||||||||++|.+||+.+|+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~---~~~----halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG---RLP----HALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred cccchhHHHHHHHHHHhcC---CCC----ceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 4555555555544443221 112 1599999999999999999999998765
No 442
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.34 E-value=0.00077 Score=62.94 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=33.3
Q ss_pred cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchh
Q 004878 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434 (725)
Q Consensus 381 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~ 434 (725)
..|.||++||+-..+... ....+.+++..+....++-+++.|-.++
T Consensus 150 ~~P~ILLLDE~TsALD~~--------nkr~ie~mi~~~v~~q~vAv~WiTHd~d 195 (223)
T COG4619 150 FMPKILLLDEITSALDES--------NKRNIEEMIHRYVREQNVAVLWITHDKD 195 (223)
T ss_pred cCCceEEecCchhhcChh--------hHHHHHHHHHHHhhhhceEEEEEecChH
Confidence 458899999998775321 2345677888888778888888876653
No 443
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.33 E-value=0.00055 Score=78.09 Aligned_cols=77 Identities=25% Similarity=0.383 Sum_probs=61.1
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li 708 (725)
..++|+..++..+...+.+.... + ..||++|++|||||++|++|-..-...+.+|+.||++.+-+...-+.|+
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~--~-----~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lf 259 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAAS--D-----LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELF 259 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCC--C-----CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhc
Confidence 45899999999988888765321 1 2799999999999999999999865567799999999987655556788
Q ss_pred cCCC
Q 004878 709 GSPP 712 (725)
Q Consensus 709 G~pp 712 (725)
|.-.
T Consensus 260 G~~~ 263 (509)
T PRK05022 260 GHVK 263 (509)
T ss_pred Cccc
Confidence 8543
No 444
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.31 E-value=0.0022 Score=80.25 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=81.2
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee------hhhhhc--cccccchHHHHHHHHHHHHHh
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD------MGLLMA--GAKERGELEARVTTLISEIQK 380 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld------~~~l~~--g~~~~g~~~~~l~~~~~~~~~ 380 (725)
..+.++||.||.|+|||.++..+|+.. +.+++.++ +.+++. -+...|++..+-..++..+.+
T Consensus 438 ~~~~pillqG~tssGKtsii~~la~~~----------g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~ 507 (1856)
T KOG1808|consen 438 SGKFPILLQGPTSSGKTSIIKELARAT----------GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN 507 (1856)
T ss_pred cCCCCeEEecCcCcCchhHHHHHHHHh----------ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHh
Confidence 345689999999999999999999998 44444443 222221 122334444444445554443
Q ss_pred cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC----------------CeEEEEeccchh-hhhhhcccH
Q 004878 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------------ELQCIASTTQDE-HRTQFEKDK 443 (725)
Q Consensus 381 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----------------~v~vI~at~~~~-~~~~~~ld~ 443 (725)
+.++|+|+++.. ..++.++|..++..+ .+.+.++-++.. |.....+..
T Consensus 508 --G~~~vlD~lnla-------------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsR 572 (1856)
T KOG1808|consen 508 --GDWIVLDELNLA-------------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSR 572 (1856)
T ss_pred --CCEEEecccccc-------------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhh
Confidence 569999999877 335666776666532 122333333331 444555667
Q ss_pred HHHcccceEEecCCCHHHHHHHH
Q 004878 444 ALARRFQPVLISEPSQEDAVRIL 466 (725)
Q Consensus 444 ~L~~Rf~~I~i~~Ps~ee~~~IL 466 (725)
+|..||..+.+..-..++...|+
T Consensus 573 a~~~rf~e~~f~~~~e~e~~~i~ 595 (1856)
T KOG1808|consen 573 ALRNRFIELHFDDIGEEELEEIL 595 (1856)
T ss_pred cccccchhhhhhhcCchhhhhhh
Confidence 77778876666666666666665
No 445
>PRK04296 thymidine kinase; Provisional
Probab=97.28 E-value=0.0014 Score=64.47 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.2
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHh
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
.+++||+|+||||++..++.++..
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999988754
No 446
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.28 E-value=0.00024 Score=76.00 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=37.9
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.|+||++++.++.......+ ++++||.||+|||||++|+++++.+.
T Consensus 18 ~ivGq~~~k~al~~~~~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPK---------IGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHhChHHHHHHHHHhccCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 38999999998876554322 35999999999999999999999873
No 447
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.00032 Score=74.94 Aligned_cols=48 Identities=29% Similarity=0.539 Sum_probs=40.0
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.|+||+.+++.+...+...+. | ..+||+||+|+|||++|+++|+.++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~----~----ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRF----S----HAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCC----C----ceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 488999999999888764432 1 27899999999999999999999865
No 448
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.27 E-value=0.00021 Score=69.83 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 662 iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
++++||||+|||++|+.||+.+ +++.+++++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~-----~~~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF-----GFTHLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECChHHH
Confidence 6899999999999999999997 367788877764
No 449
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.26 E-value=0.00027 Score=78.93 Aligned_cols=50 Identities=28% Similarity=0.407 Sum_probs=42.1
Q ss_pred CCCcccccHHHHHHHHHHHhc------CCCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 288 LIDPVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~------~~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
-|++++|.++.++++++.+.. ..+.-++|+||||+|||+|++.|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 477899999999999998832 34456789999999999999999998754
No 450
>PRK05642 DNA replication initiation factor; Validated
Probab=97.26 E-value=0.0004 Score=70.78 Aligned_cols=40 Identities=18% Similarity=0.386 Sum_probs=34.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
.++||||+|||||.|++++++++...+...+.+++.+++.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 6899999999999999999998765566788898888765
No 451
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.002 Score=62.17 Aligned_cols=25 Identities=44% Similarity=0.520 Sum_probs=22.9
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHhc
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~~ 338 (725)
++|+|+||+||||+++.|++.+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 6899999999999999999999764
No 452
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.25 E-value=0.0013 Score=68.13 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=47.3
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh-hhhh---cccc--ccch----H--HHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM-GLLM---AGAK--ERGE----L--EARVTTLIS 376 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~-~~l~---~g~~--~~g~----~--~~~l~~~~~ 376 (725)
+...|++|+||+|+||||+++.++..+........+.+.++..+|- ..+. .+.. ..+. + ..+...++.
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~ 188 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM 188 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHH
Confidence 3346899999999999999999998875332222233555554441 1111 1100 0000 0 011223444
Q ss_pred HHHhcCCeEEEEccc
Q 004878 377 EIQKSGDVILFIDEV 391 (725)
Q Consensus 377 ~~~~~~~~IL~IDEi 391 (725)
.+....|.++++||+
T Consensus 189 ~i~~~~P~villDE~ 203 (270)
T TIGR02858 189 LIRSMSPDVIVVDEI 203 (270)
T ss_pred HHHhCCCCEEEEeCC
Confidence 455567889999996
No 453
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.00035 Score=75.30 Aligned_cols=48 Identities=38% Similarity=0.637 Sum_probs=41.3
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
.++||++++..+..++...+. | ..+||+||+|+|||++|+.+|+.++.
T Consensus 24 ~l~Gh~~a~~~L~~a~~~grl----~----ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGKL----H----HALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred hccCcHHHHHHHHHHHHcCCC----C----eeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 389999999999998876542 1 27999999999999999999999865
No 454
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.24 E-value=0.0015 Score=68.28 Aligned_cols=117 Identities=16% Similarity=0.268 Sum_probs=64.1
Q ss_pred CCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee-hhhhhcc----
Q 004878 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD-MGLLMAG---- 360 (725)
Q Consensus 288 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld-~~~l~~g---- 360 (725)
.++++.-.......+.++|.. +.+.+++++|++|+||||++.++...+... ..+++.+. ..++...
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-------~~~iv~iEd~~E~~l~~~~~ 174 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-------DERIVTIEDPPELRLPGPNQ 174 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-------TSEEEEEESSS-S--SCSSE
T ss_pred cHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-------ccceEEeccccceeecccce
Confidence 344444333333444444443 357899999999999999999999988542 13333332 1111100
Q ss_pred ----c-cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEecc
Q 004878 361 ----A-KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431 (725)
Q Consensus 361 ----~-~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~ 431 (725)
. ..... +.+++..+.+..|.+++|+|+-.- +.... ......|....++|.-
T Consensus 175 ~~~~~~~~~~~----~~~~l~~~LR~~pD~iiigEiR~~---------------e~~~~-~~a~~tGh~~~~tT~H 230 (270)
T PF00437_consen 175 IQIQTRRDEIS----YEDLLKSALRQDPDVIIIGEIRDP---------------EAAEA-IQAANTGHLGSLTTLH 230 (270)
T ss_dssp EEEEEETTTBS----HHHHHHHHTTS--SEEEESCE-SC---------------HHHHH-HHHHHTT-EEEEEEEE
T ss_pred EEEEeecCccc----HHHHHHHHhcCCCCcccccccCCH---------------hHHHH-HHhhccCCceeeeeee
Confidence 0 11122 445555555677889999999543 34445 5566677655455543
No 455
>PRK08727 hypothetical protein; Validated
Probab=97.24 E-value=0.00052 Score=69.94 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=34.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+++|+||+|||||.|+.+++..+...+...+.+.+.++...
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~ 83 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR 83 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh
Confidence 69999999999999999999998766667778888776653
No 456
>PHA00729 NTP-binding motif containing protein
Probab=97.22 E-value=0.00021 Score=71.25 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=32.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc-------------CCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYF-------------GSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lf-------------g~~~~lIrid~sE~~~k 701 (725)
.++++||||||||++|.+||+.+. ......+.+|.+++.++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~ 72 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEK 72 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHH
Confidence 799999999999999999999863 22344677888877765
No 457
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.21 E-value=0.00099 Score=71.42 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=57.9
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li 708 (725)
+.++|.+.++..+...+.+.-. .. ..||++|++||||+.+|++|-..-...+.+||.||...+.+..--+.|+
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~---~~----~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP---LD----KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC---CC----CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 3578888888888777766531 11 2689999999999999999987654346789999999887644445677
Q ss_pred cCCCc
Q 004878 709 GSPPG 713 (725)
Q Consensus 709 G~ppg 713 (725)
|.-.|
T Consensus 79 g~~~~ 83 (326)
T PRK11608 79 GHEAG 83 (326)
T ss_pred ccccc
Confidence 75433
No 458
>PRK08118 topology modulation protein; Reviewed
Probab=97.21 E-value=0.00029 Score=67.77 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.++++||||+|||++|+.|++.+ +.+++.+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l---~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL---NIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCceecc
Confidence 58999999999999999999997 56666666
No 459
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.21 E-value=0.0026 Score=65.21 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
..+..++|+||+|+||||+++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 56677999999999999999999988743
No 460
>PRK09183 transposase/IS protein; Provisional
Probab=97.19 E-value=0.00025 Score=73.29 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=33.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+++|+||||||||.||.+|+..+...+.....++++++.+.
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~ 144 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ 144 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH
Confidence 79999999999999999999886555556777788877744
No 461
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.19 E-value=0.00099 Score=76.09 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=59.4
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li 708 (725)
..++|...++..+...+++... .. ..+|++|++||||+++|+++-..-...+.+|+.+|++.+.+...-+.|+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~-~~------~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elF 276 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM-LD------APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELF 276 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC-CC------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhc
Confidence 4588888888777666654321 11 2689999999999999999977665556789999999988766667888
Q ss_pred cCCCc
Q 004878 709 GSPPG 713 (725)
Q Consensus 709 G~ppg 713 (725)
|.-||
T Consensus 277 G~~~~ 281 (520)
T PRK10820 277 GHAPG 281 (520)
T ss_pred CCCCC
Confidence 86554
No 462
>PRK14532 adenylate kinase; Provisional
Probab=97.18 E-value=0.00028 Score=69.35 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=30.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.+++.||||+|||++|+.||+.+ +++.++..+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~-----g~~~is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER-----GMVQLSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEeCcHHHHH
Confidence 47899999999999999999986 3677777777665
No 463
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.18 E-value=0.00037 Score=62.99 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=21.0
Q ss_pred ceEEcCCCChHHHHHHHHHHHH
Q 004878 314 PILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l 335 (725)
++|+|+||+||||+++.|++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999988
No 464
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.18 E-value=0.0032 Score=64.25 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=48.3
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-------------------cc---------
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------------------AG--------- 360 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~-------------------~g--------- 360 (725)
+.+..++++|+||+|||+++..++...... +.++++++...-. .+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-------g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~ 95 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQ-------GKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNT 95 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhC-------CCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccc
Confidence 445668899999999999999998765331 3444444431110 00
Q ss_pred --c-cccchHHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 004878 361 --A-KERGELEARVTTLISEIQKSGDVILFIDEVHTLI 395 (725)
Q Consensus 361 --~-~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~ 395 (725)
. ......+..+..+.+.+...++.+++||++..+.
T Consensus 96 ~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 96 EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0 0011223444555555555577899999999764
No 465
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.18 E-value=0.00076 Score=73.21 Aligned_cols=112 Identities=13% Similarity=0.192 Sum_probs=62.3
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc---------cccccc---hHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---------GAKERG---ELEARVTTLISEI 378 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~---------g~~~~g---~~~~~l~~~~~~~ 378 (725)
+.-++|+|+||+|||+++..++..+... +.++++++...... +..... ..+..+..+++.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~-------g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-------GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 4457899999999999999999887542 34566655432110 000000 0011244555556
Q ss_pred HhcCCeEEEEccchhhhhCCCCCCCCC-CCcHHHHHHHhhhhcCCCeEEEEe
Q 004878 379 QKSGDVILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSLGRGELQCIAS 429 (725)
Q Consensus 379 ~~~~~~IL~IDEid~l~~~~~~~~~~~-~~~~~~~~~L~~~l~~~~v~vI~a 429 (725)
...++.+|+||+|+.+.........+. ..-.++...|..+..+..+.+|.+
T Consensus 155 ~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilv 206 (372)
T cd01121 155 EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIV 206 (372)
T ss_pred HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 666788999999999864321100000 001223444556665566655554
No 466
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.17 E-value=0.0018 Score=67.09 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee-hhhhh-ccc---cccchHHHH
Q 004878 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD-MGLLM-AGA---KERGELEAR 370 (725)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld-~~~l~-~g~---~~~g~~~~~ 370 (725)
++.++.+..++. .....++|+|++|+||||+++++...+... +.+++.++ ..++. .+. ....+....
T Consensus 66 ~~~~~~l~~~~~-~~~GlilisG~tGSGKTT~l~all~~i~~~-------~~~iitiEdp~E~~~~~~~q~~v~~~~~~~ 137 (264)
T cd01129 66 PENLEIFRKLLE-KPHGIILVTGPTGSGKTTTLYSALSELNTP-------EKNIITVEDPVEYQIPGINQVQVNEKAGLT 137 (264)
T ss_pred HHHHHHHHHHHh-cCCCEEEEECCCCCcHHHHHHHHHhhhCCC-------CCeEEEECCCceecCCCceEEEeCCcCCcC
Confidence 344555555554 345678999999999999999998887431 22333331 11100 000 000011112
Q ss_pred HHHHHHHHHhcCCeEEEEccchhh
Q 004878 371 VTTLISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 371 l~~~~~~~~~~~~~IL~IDEid~l 394 (725)
+...+..+.+..|.+++|+|+..-
T Consensus 138 ~~~~l~~~lR~~PD~i~vgEiR~~ 161 (264)
T cd01129 138 FARGLRAILRQDPDIIMVGEIRDA 161 (264)
T ss_pred HHHHHHHHhccCCCEEEeccCCCH
Confidence 445555555677889999999543
No 467
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.17 E-value=0.001 Score=78.26 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=59.2
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li 708 (725)
..++|.+.++..+...+++.-. .. ..+|++|+|||||+++|++|-+.....+.+||.||+..+.+..--+.|+
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~~----~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---SS----FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---cC----CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhc
Confidence 4578888888877666655421 11 2689999999999999999999875566799999999988766667899
Q ss_pred cCC
Q 004878 709 GSP 711 (725)
Q Consensus 709 G~p 711 (725)
|.-
T Consensus 398 g~~ 400 (638)
T PRK11388 398 GSD 400 (638)
T ss_pred CCC
Confidence 854
No 468
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.17 E-value=0.001 Score=75.45 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=59.8
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG 709 (725)
.++|+..++..+...++..... + ..+|++|++||||+++|++|-+.-...+.+|+.||...+-+..--+.|+|
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~--~-----~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG 285 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARS--D-----ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFG 285 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCC--C-----CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcC
Confidence 3889999888887777543211 1 27999999999999999999877545577999999998877666678888
Q ss_pred CCCc
Q 004878 710 SPPG 713 (725)
Q Consensus 710 ~ppg 713 (725)
...|
T Consensus 286 ~~~g 289 (526)
T TIGR02329 286 YEEG 289 (526)
T ss_pred Cccc
Confidence 6544
No 469
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.16 E-value=0.00041 Score=66.99 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEe
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIri 693 (725)
.++|+||||||||++|+.||+.+ +..++..
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l---~~~~~d~ 35 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRL---GYDFIDT 35 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEC
Confidence 78999999999999999999998 4455543
No 470
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.16 E-value=0.00027 Score=65.86 Aligned_cols=33 Identities=36% Similarity=0.661 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 662 iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
++++||||+|||++|+.|++.+ . ...++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~---~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL---G--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS---T--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC---C--CEEEeHHHHH
Confidence 7899999999999999999987 3 4556665543
No 471
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.16 E-value=0.0097 Score=65.63 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=60.8
Q ss_pred cCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHh
Q 004878 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKL 707 (725)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~l 707 (725)
...++|+..++..+.+.+.+... .+ ..+|+.|++||||-.+|++|=+.==..+.+||.||+..+-+.--=|.|
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~--s~-----a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESEL 212 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAP--SD-----ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESEL 212 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhC--CC-----CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHh
Confidence 44588999999999888866531 11 379999999999999999998874223568999999988876666778
Q ss_pred hcCCCc
Q 004878 708 IGSPPG 713 (725)
Q Consensus 708 iG~ppg 713 (725)
+|--.|
T Consensus 213 FGhekG 218 (464)
T COG2204 213 FGHEKG 218 (464)
T ss_pred hccccc
Confidence 885544
No 472
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.15 E-value=0.0044 Score=61.29 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 298 ~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
+.+.+..++.. ..+-.+|.|+||||||++++.+...+..
T Consensus 6 Q~~a~~~~l~~-~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 6 QREAVRAILTS-GDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp HHHHHHHHHHC-TCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 33444444443 3345678899999999999999988755
No 473
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.15 E-value=0.0012 Score=74.87 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=59.5
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ 710 (725)
++|...++..+...+..... .. ..+|+.|++|||||++|++|....+....+|+.+|++.+.+...-+.|+|.
T Consensus 140 lig~s~~~~~l~~~~~~~~~----~~---~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~ 212 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGRLSR----SS---ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGH 212 (469)
T ss_pred ceecCHHHHHHHHHHHHHhc----cC---CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCC
Confidence 45555555555555443221 11 278999999999999999999987766789999999999877778889998
Q ss_pred CCc-cccc
Q 004878 711 PPG-YVGV 717 (725)
Q Consensus 711 ppg-yvG~ 717 (725)
..| |.|.
T Consensus 213 ~~g~~~~~ 220 (469)
T PRK10923 213 EKGAFTGA 220 (469)
T ss_pred CCCCCCCC
Confidence 776 4443
No 474
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.13 E-value=0.00042 Score=65.47 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.++++||||||||++|+.||+.+ +..++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l---~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL---GLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh---CCCEEEch
Confidence 37899999999999999999997 44555444
No 475
>PRK06921 hypothetical protein; Provisional
Probab=97.13 E-value=0.00046 Score=71.58 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=33.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCC-CCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGS-ESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~-~~~lIrid~sE~~~ 700 (725)
+++|+||||||||.||.|||+++... +...+.+...++++
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 89999999999999999999998654 56677777776654
No 476
>PRK00625 shikimate kinase; Provisional
Probab=97.10 E-value=0.00049 Score=66.51 Aligned_cols=36 Identities=28% Similarity=0.521 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|+|+||+|||++++.||+.+ + +..+|+.++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l---~--~~~id~D~~I~~ 37 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL---S--LPFFDTDDLIVS 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCEEEhhHHHHH
Confidence 58999999999999999999998 4 445566666554
No 477
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.10 E-value=0.0014 Score=74.51 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=59.5
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc--------CCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF--------GSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf--------g~~~~lIrid~sE~~~k 701 (725)
.++|+..++..+...+.+.... + ..+|++|+|||||+.+|++|=+.++ ..+.+|+.||.+.+.+.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~s--~-----~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~ 292 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYARS--S-----AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES 292 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhCC--C-----CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh
Confidence 3889999998888777553211 1 2799999999999999999988732 34678999999988876
Q ss_pred hhHhHhhcCCCc
Q 004878 702 HTVSKLIGSPPG 713 (725)
Q Consensus 702 ~~vs~liG~ppg 713 (725)
---+.|+|.-.|
T Consensus 293 lleseLFG~~~g 304 (538)
T PRK15424 293 LLEAELFGYEEG 304 (538)
T ss_pred hHHHHhcCCccc
Confidence 666788886554
No 478
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.10 E-value=0.00087 Score=67.81 Aligned_cols=45 Identities=31% Similarity=0.507 Sum_probs=39.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li 708 (725)
+-.++||+|||||+..|.||+.+ +..++.++.+|-++-..++|++
T Consensus 34 ~~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~ril 78 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSRIL 78 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHHHH
Confidence 56789999999999999999998 7789999999999999999987
No 479
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.00054 Score=73.53 Aligned_cols=49 Identities=29% Similarity=0.423 Sum_probs=39.7
Q ss_pred ceeC-cHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 004878 630 RVIG-QDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (725)
Q Consensus 630 ~v~G-q~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~ 686 (725)
.|+| |+.+++.+...+...+. ...+||+||+|+|||++|+++|+.++..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l--------~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRL--------SHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 3556 98899999888865432 1378999999999999999999998754
No 480
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.08 E-value=0.0019 Score=65.43 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=30.7
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
.+.-++|+|+||+|||+++..++...... +..++++++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~-------~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN-------GKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEECC
Confidence 34456899999999999999999877542 5667777766
No 481
>PRK13695 putative NTPase; Provisional
Probab=97.06 E-value=0.0071 Score=58.56 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.8
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHh
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
.++|+|++|+||||+++.++..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999887653
No 482
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.05 E-value=0.0034 Score=58.35 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=20.5
Q ss_pred ceEEcCCCChHHHHHHHHHHHH
Q 004878 314 PILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l 335 (725)
++++|+||+||||+++.++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999877
No 483
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.05 E-value=0.00062 Score=72.81 Aligned_cols=46 Identities=28% Similarity=0.450 Sum_probs=37.2
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
..|+||++++.++..+..-.. ++++|+.||||+|||+++++|+..+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~---------~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK---------IGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC---------CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 358999999988755443221 3589999999999999999999998
No 484
>PRK08118 topology modulation protein; Reviewed
Probab=97.05 E-value=0.0013 Score=63.34 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.8
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.|+++|+||+||||+++.|++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 485
>PRK14531 adenylate kinase; Provisional
Probab=97.05 E-value=0.00045 Score=67.58 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++++||||+|||++++.||+.+ ++..+++++++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~-----g~~~is~gd~lr~ 39 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH-----GLRHLSTGDLLRS 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCeEecccHHHH
Confidence 58999999999999999999997 3566777776654
No 486
>PRK13947 shikimate kinase; Provisional
Probab=97.04 E-value=0.00062 Score=65.71 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.+++.||||||||++|+.||+.+ +.+|+..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEECc
Confidence 68999999999999999999998 55666555
No 487
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.03 E-value=0.00094 Score=68.14 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE 697 (725)
.++||||||||||.|+.++++.+...+...+.+.+.+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 7899999999999999999998754333444544443
No 488
>PRK03839 putative kinase; Provisional
Probab=97.03 E-value=0.00057 Score=66.64 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=31.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li 708 (725)
.++|.|+||+|||++|+.||+.+ +..+ +|+.++..+..+....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~---~~~~--id~d~~~~~~~~~~~~ 44 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL---GYEY--VDLTEFALKKGIGEEK 44 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcE--EehhhhhhhcCCcccC
Confidence 47899999999999999999997 4444 5555666544444333
No 489
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.02 E-value=0.0013 Score=73.37 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=63.2
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc----cccc--------hHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA----KERG--------ELEARVTTLISEI 378 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~----~~~g--------~~~~~l~~~~~~~ 378 (725)
+.-++|+|+||+|||+++..++..+... +.++++++........ ...+ ..+..+..+++.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-------g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA-------GGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 4457899999999999999999887532 4566666643321100 0000 0011244555666
Q ss_pred HhcCCeEEEEccchhhhhCCCCCCCCCC-CcHHHHHHHhhhhcCCCeEEEEe
Q 004878 379 QKSGDVILFIDEVHTLIGSGTVGRGNKG-TGLDISNLLKPSLGRGELQCIAS 429 (725)
Q Consensus 379 ~~~~~~IL~IDEid~l~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~v~vI~a 429 (725)
+..++.+++||.+..+....-.+..+.. ....+.+.|..+..+..+.+|.+
T Consensus 153 ~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv 204 (446)
T PRK11823 153 EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLV 204 (446)
T ss_pred HhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 6667889999999998643211000000 01223445566666666665554
No 490
>PRK06696 uridine kinase; Validated
Probab=97.02 E-value=0.0019 Score=65.42 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 636 ~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+.++.|+..+.... +.+|. .|.+.|+||+|||++|+.|++.|-..+...+.+.|-.|...
T Consensus 5 ~~~~~la~~~~~~~-----~~~~~-iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 5 QLIKELAEHILTLN-----LTRPL-RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred HHHHHHHHHHHHhC-----CCCce-EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 34555555554322 22333 78899999999999999999998322346777777777643
No 491
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.01 E-value=0.0021 Score=71.14 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=33.7
Q ss_pred cccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 291 PVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+.|.+...+.+.-.|.. +.--|+||+|.|||||+-+.+.+++..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC
Confidence 356777666666666643 223579999999999999999988765
No 492
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.01 E-value=0.00047 Score=76.40 Aligned_cols=41 Identities=15% Similarity=0.397 Sum_probs=34.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCC--CCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~--~~~lIrid~sE~~~k 701 (725)
.++||||||||||.|++++++++... +..++.++..++++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 78999999999999999999998643 457888998887654
No 493
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.00 E-value=0.00065 Score=66.19 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=44.3
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc------chhhH
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM------ERHTV 704 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~------~k~~v 704 (725)
.+|.++.++.+...+. ...+.. + ..++++||+|+|||++.+++...+-..+.-++.++..... -.+.+
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~~~-~----~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQSGS-P----RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSERNPYSPFRSAL 75 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS----------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTTS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HHHcCC-C----cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccccchhhHHHHHH
Confidence 5688888888888776 222111 1 2899999999999999999888873322227888888772 14555
Q ss_pred hHhhcC
Q 004878 705 SKLIGS 710 (725)
Q Consensus 705 s~liG~ 710 (725)
..+++.
T Consensus 76 ~~l~~~ 81 (185)
T PF13191_consen 76 RQLIDQ 81 (185)
T ss_dssp HHHS--
T ss_pred HHHHHH
Confidence 555554
No 494
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.00 E-value=0.0048 Score=62.70 Aligned_cols=112 Identities=15% Similarity=0.215 Sum_probs=59.1
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh----hhc-----cc------------------
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL----LMA-----GA------------------ 361 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~----l~~-----g~------------------ 361 (725)
+.+..++|+|++|+|||+++..++...... +.++++++... +.. |.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-------g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 94 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN-------GYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYP 94 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecc
Confidence 445678999999999999987666655332 22333332211 000 00
Q ss_pred --cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccc
Q 004878 362 --KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432 (725)
Q Consensus 362 --~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~ 432 (725)
....+.+..+..++..+...++.+++||++-.+...... ......+.+.++.+.+.+. .+|.+++.
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d----~~~~~~l~~~l~~l~~~g~-tvi~t~~~ 162 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS----EVAVNDLMAFFKRISSLNK-VIILTANP 162 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc----hHHHHHHHHHHHHHHhCCC-EEEEEecc
Confidence 000112445556666665556789999999887522111 0012335555554444454 45555544
No 495
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.99 E-value=0.00048 Score=61.03 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 004878 662 MLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 662 iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
|.||||||||||.+|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998884
No 496
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.99 E-value=0.00059 Score=63.47 Aligned_cols=61 Identities=21% Similarity=0.362 Sum_probs=43.3
Q ss_pred eCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 632 ~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
+|...++..+...+..... .+ ..+|++|++||||+.+|++|...-......|+.+|..++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~-~~------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-SS------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-SS------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC
T ss_pred CCCCHHHHHHHHHHHHHhC-CC------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc
Confidence 4566677777777665531 11 2689999999999999999999876656778888877654
No 497
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.99 E-value=0.001 Score=77.66 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=36.4
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.|+||+.++..+..+....+ ++++||.||||||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~~~---------~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDPR---------IGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred hhcChHHHHHHHHHHhhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 58999999977754443221 2589999999999999999999997
No 498
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.99 E-value=0.0012 Score=66.00 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred CCCCceEEcCCCChHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLA 332 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la 332 (725)
.+..+||||+||+||||+|+.++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 35669999999999999999886
No 499
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.99 E-value=0.0017 Score=76.98 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=57.4
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG 709 (725)
.++|+..++..+...++..... + ..+|++|+||||||++|++|.......+.+|+.+|...+.+...-+.|+|
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~--~-----~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg 449 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQS--D-----STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFG 449 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCC--C-----CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcC
Confidence 4788888888887776654211 1 27899999999999999999988655677999999988766545566777
Q ss_pred CC
Q 004878 710 SP 711 (725)
Q Consensus 710 ~p 711 (725)
.-
T Consensus 450 ~~ 451 (686)
T PRK15429 450 HE 451 (686)
T ss_pred cc
Confidence 43
No 500
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.97 E-value=0.0011 Score=62.52 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 662 MLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 662 iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
++|+||||+|||++|+.|++.+ + ...+|...+..+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~~~~ 37 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL---G--APFIDGDDLHPPA 37 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccccHH
Confidence 6899999999999999999985 2 4556776666543
Done!