Query 004878
Match_columns 725
No_of_seqs 542 out of 3829
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r6b_X CLPA protein; AAA+, N-t 100.0 2.8E-73 9.5E-78 676.2 47.7 542 85-720 2-546 (758)
2 1qvr_A CLPB protein; coiled co 100.0 1.4E-72 4.8E-77 675.9 48.9 589 80-719 1-648 (854)
3 3pxi_A Negative regulator of g 100.0 9.5E-73 3.3E-77 670.5 39.5 562 80-705 1-567 (758)
4 3pxg_A Negative regulator of g 100.0 4.8E-59 1.6E-63 521.5 30.6 463 80-606 1-468 (468)
5 3cf2_A TER ATPase, transitiona 100.0 2.7E-36 9.3E-41 350.5 10.1 332 287-723 201-560 (806)
6 1ypw_A Transitional endoplasmi 99.9 1.2E-26 4E-31 274.8 13.8 331 285-723 199-560 (806)
7 3fh2_A Probable ATP-dependent 99.9 8.9E-25 3E-29 204.8 17.1 141 80-233 2-144 (146)
8 3fes_A ATP-dependent CLP endop 99.9 5.7E-24 1.9E-28 198.9 12.4 139 80-232 3-143 (145)
9 4b4t_J 26S protease regulatory 99.9 1.9E-22 6.4E-27 216.2 24.4 202 286-517 144-369 (405)
10 1khy_A CLPB protein; alpha hel 99.9 5.3E-23 1.8E-27 193.3 15.2 140 80-231 1-142 (148)
11 2y1q_A CLPC N-domain, negative 99.9 4.6E-23 1.6E-27 194.2 14.1 140 80-233 1-142 (150)
12 4b4t_H 26S protease regulatory 99.9 1.5E-21 5.1E-26 211.6 24.0 202 287-517 206-430 (467)
13 4b4t_I 26S protease regulatory 99.9 6.9E-22 2.4E-26 212.2 21.2 201 287-517 179-403 (437)
14 1jbk_A CLPB protein; beta barr 99.9 2.9E-22 9.9E-27 195.5 15.4 192 270-466 2-194 (195)
15 4b4t_M 26S protease regulatory 99.9 1.2E-21 3.9E-26 213.4 19.8 203 286-517 177-402 (434)
16 4b4t_L 26S protease subunit RP 99.9 3E-21 1E-25 210.3 22.2 204 287-517 178-402 (437)
17 4b4t_K 26S protease regulatory 99.9 8.2E-21 2.8E-25 206.6 22.5 203 287-517 169-394 (428)
18 2p65_A Hypothetical protein PF 99.9 1.6E-21 5.4E-26 189.5 14.7 184 271-458 3-187 (187)
19 1k6k_A ATP-dependent CLP prote 99.9 3E-21 1E-25 180.2 13.8 135 85-230 2-139 (143)
20 3eie_A Vacuolar protein sortin 99.8 5.3E-20 1.8E-24 195.8 21.4 206 284-517 12-235 (322)
21 3vfd_A Spastin; ATPase, microt 99.8 2.1E-19 7.2E-24 196.3 26.1 197 278-497 103-318 (389)
22 3zri_A CLPB protein, CLPV; cha 99.8 1.4E-20 4.9E-25 179.4 13.3 136 77-229 17-160 (171)
23 2qp9_X Vacuolar protein sortin 99.8 1.3E-19 4.4E-24 195.3 21.6 213 277-517 38-268 (355)
24 3d8b_A Fidgetin-like protein 1 99.8 6.5E-19 2.2E-23 190.1 26.6 216 271-514 65-299 (357)
25 1xwi_A SKD1 protein; VPS4B, AA 99.8 2.7E-19 9.4E-24 190.0 21.8 205 286-517 8-230 (322)
26 3pxi_A Negative regulator of g 99.8 4.5E-19 1.5E-23 210.1 23.7 179 290-494 491-704 (758)
27 3h4m_A Proteasome-activating n 99.8 4.7E-18 1.6E-22 177.4 24.2 202 287-517 14-238 (285)
28 3b9p_A CG5977-PA, isoform A; A 99.8 2.8E-18 9.6E-23 180.3 22.0 209 279-515 10-238 (297)
29 2zan_A Vacuolar protein sortin 99.8 1.5E-18 5.1E-23 192.4 18.7 210 281-517 125-352 (444)
30 3hu3_A Transitional endoplasmi 99.8 3E-18 1E-22 191.3 20.8 206 284-518 198-423 (489)
31 3pvs_A Replication-associated 99.8 1.3E-18 4.4E-23 192.3 17.6 203 278-517 14-222 (447)
32 3syl_A Protein CBBX; photosynt 99.8 1.3E-17 4.6E-22 176.0 21.8 210 291-516 32-261 (309)
33 3cf2_A TER ATPase, transitiona 99.8 5.9E-19 2E-23 205.3 10.8 204 287-517 474-698 (806)
34 1r6b_X CLPA protein; AAA+, N-t 99.8 4.9E-17 1.7E-21 192.9 27.2 179 290-493 458-694 (758)
35 3pfi_A Holliday junction ATP-d 99.8 7.3E-17 2.5E-21 172.7 25.5 194 276-517 15-234 (338)
36 1lv7_A FTSH; alpha/beta domain 99.8 2.8E-17 9.7E-22 168.9 21.4 209 281-517 3-232 (257)
37 3cf0_A Transitional endoplasmi 99.8 6.1E-18 2.1E-22 178.1 16.1 205 286-517 11-236 (301)
38 2qz4_A Paraplegin; AAA+, SPG7, 99.8 3E-17 1E-21 168.9 19.8 205 287-517 3-229 (262)
39 3u61_B DNA polymerase accessor 99.7 3.8E-17 1.3E-21 173.9 17.4 197 276-514 12-220 (324)
40 2ce7_A Cell division protein F 99.7 9.5E-17 3.2E-21 177.6 19.5 204 287-518 13-237 (476)
41 2chg_A Replication factor C sm 99.7 4.4E-16 1.5E-20 155.2 20.7 197 278-515 5-209 (226)
42 3uk6_A RUVB-like 2; hexameric 99.7 6.5E-16 2.2E-20 167.3 21.8 207 278-517 31-310 (368)
43 1hqc_A RUVB; extended AAA-ATPa 99.7 2E-15 6.7E-20 160.4 23.2 184 282-514 4-215 (324)
44 2x8a_A Nuclear valosin-contain 99.7 8.5E-16 2.9E-20 159.1 18.3 206 287-517 7-233 (274)
45 1iqp_A RFCS; clamp loader, ext 99.7 1.6E-15 5.6E-20 161.0 20.8 207 271-514 6-216 (327)
46 2chq_A Replication factor C sm 99.7 5.5E-16 1.9E-20 164.1 17.0 200 278-514 5-208 (319)
47 1sxj_B Activator 1 37 kDa subu 99.7 1.1E-15 3.9E-20 161.9 18.8 196 278-514 9-213 (323)
48 1sxj_D Activator 1 41 kDa subu 99.7 9.4E-16 3.2E-20 164.8 16.7 207 274-516 21-241 (353)
49 1njg_A DNA polymerase III subu 99.7 1.8E-15 6.2E-20 152.7 17.6 200 279-514 12-232 (250)
50 2r44_A Uncharacterized protein 99.6 4.4E-15 1.5E-19 158.4 20.5 161 276-471 13-199 (331)
51 1ofh_A ATP-dependent HSL prote 99.6 2.6E-15 8.8E-20 158.3 17.7 213 291-516 16-272 (310)
52 2r62_A Cell division protease 99.6 1.4E-17 5E-22 172.1 -0.2 169 285-471 6-197 (268)
53 1jr3_A DNA polymerase III subu 99.6 4.9E-15 1.7E-19 160.5 19.6 202 278-515 4-226 (373)
54 1sxj_A Activator 1 95 kDa subu 99.6 4.2E-16 1.4E-20 176.2 10.2 200 276-513 25-255 (516)
55 1ixz_A ATP-dependent metallopr 99.6 8E-15 2.7E-19 150.3 18.8 203 287-517 13-236 (254)
56 3t15_A Ribulose bisphosphate c 99.6 2.8E-15 9.5E-20 157.0 15.4 162 309-497 34-216 (293)
57 1sxj_E Activator 1 40 kDa subu 99.6 1.7E-15 5.8E-20 163.1 13.9 204 279-516 3-243 (354)
58 2dhr_A FTSH; AAA+ protein, hex 99.6 2.3E-15 7.9E-20 167.5 15.2 204 286-517 27-251 (499)
59 3te6_A Regulatory protein SIR3 99.6 5.2E-15 1.8E-19 155.0 16.0 212 292-519 22-288 (318)
60 1in4_A RUVB, holliday junction 99.6 9.9E-14 3.4E-18 148.0 26.3 193 279-519 14-232 (334)
61 1iy2_A ATP-dependent metallopr 99.6 2.3E-14 7.7E-19 149.0 20.3 204 286-517 36-260 (278)
62 1sxj_C Activator 1 40 kDa subu 99.6 1.7E-14 5.9E-19 154.4 19.5 195 277-512 12-214 (340)
63 3bos_A Putative DNA replicatio 99.6 4.3E-14 1.5E-18 142.8 20.2 199 282-517 19-224 (242)
64 1l8q_A Chromosomal replication 99.6 3.8E-14 1.3E-18 150.6 20.3 198 287-516 8-214 (324)
65 2c9o_A RUVB-like 1; hexameric 99.6 7.3E-14 2.5E-18 155.5 23.2 98 409-518 309-418 (456)
66 1d2n_A N-ethylmaleimide-sensit 99.6 2.1E-14 7.3E-19 148.7 14.6 180 289-496 32-229 (272)
67 4fcw_A Chaperone protein CLPB; 99.6 1.1E-14 3.8E-19 153.6 12.0 105 615-719 3-107 (311)
68 2z4s_A Chromosomal replication 99.6 5.7E-14 2E-18 155.3 17.8 205 288-518 103-314 (440)
69 2bjv_A PSP operon transcriptio 99.5 4.9E-14 1.7E-18 145.3 15.8 186 287-492 3-220 (265)
70 2v1u_A Cell division control p 99.5 6E-14 2E-18 152.4 17.1 212 290-517 19-256 (387)
71 4fcw_A Chaperone protein CLPB; 99.5 1.1E-13 3.9E-18 145.8 18.3 181 291-493 18-257 (311)
72 2qby_B CDC6 homolog 3, cell di 99.5 2.9E-13 9.8E-18 147.1 20.9 209 290-517 20-252 (384)
73 3hws_A ATP-dependent CLP prote 99.5 8.7E-14 3E-18 150.3 16.6 192 291-493 16-301 (363)
74 2qby_A CDC6 homolog 1, cell di 99.5 4.2E-13 1.4E-17 145.5 22.1 208 290-517 20-252 (386)
75 1um8_A ATP-dependent CLP prote 99.5 2.6E-13 9E-18 147.3 20.2 193 291-494 22-319 (376)
76 1g8p_A Magnesium-chelatase 38 99.5 2.9E-13 1E-17 145.1 18.9 209 286-517 20-302 (350)
77 3m6a_A ATP-dependent protease 99.5 4.9E-14 1.7E-18 159.8 12.4 180 290-494 81-296 (543)
78 1fnn_A CDC6P, cell division co 99.5 1.1E-12 3.6E-17 142.7 21.7 205 290-517 17-254 (389)
79 1ypw_A Transitional endoplasmi 99.5 2.4E-15 8.3E-20 178.0 0.1 169 286-471 473-662 (806)
80 1ojl_A Transcriptional regulat 99.5 6.7E-14 2.3E-18 147.2 10.6 179 290-492 2-215 (304)
81 4akg_A Glutathione S-transfera 99.5 3.5E-12 1.2E-16 164.7 27.6 140 310-473 1266-1434(2695)
82 1g41_A Heat shock protein HSLU 99.5 1E-12 3.5E-17 143.3 17.6 105 383-494 251-382 (444)
83 4b4t_J 26S protease regulatory 99.4 1.1E-13 3.9E-18 148.3 5.8 74 631-723 150-231 (405)
84 3n70_A Transport activator; si 99.4 8.5E-13 2.9E-17 122.9 8.1 135 291-457 2-142 (145)
85 1qvr_A CLPB protein; coiled co 99.4 4.2E-12 1.4E-16 152.1 16.1 183 290-494 558-799 (854)
86 1a5t_A Delta prime, HOLB; zinc 99.4 6.5E-12 2.2E-16 133.9 15.8 170 295-496 7-197 (334)
87 4b4t_I 26S protease regulatory 99.4 4.2E-13 1.4E-17 144.2 6.4 74 631-723 184-265 (437)
88 4b4t_H 26S protease regulatory 99.3 4.3E-13 1.5E-17 145.5 5.6 74 631-723 211-292 (467)
89 4b4t_M 26S protease regulatory 99.3 5.1E-13 1.7E-17 145.4 6.0 74 631-723 183-264 (434)
90 4b4t_L 26S protease subunit RP 99.3 7E-13 2.4E-17 144.5 6.6 74 631-723 183-264 (437)
91 4akg_A Glutathione S-transfera 99.3 3.1E-11 1.1E-15 156.0 22.7 135 298-467 634-790 (2695)
92 4b4t_K 26S protease regulatory 99.3 7.5E-13 2.6E-17 144.0 6.7 74 631-723 174-255 (428)
93 3co5_A Putative two-component 99.3 6.1E-13 2.1E-17 123.6 4.9 130 291-457 5-140 (143)
94 3k1j_A LON protease, ATP-depen 99.3 5.6E-11 1.9E-15 136.8 19.9 219 281-519 32-357 (604)
95 1w5s_A Origin recognition comp 99.2 2.4E-10 8E-15 125.2 19.9 216 290-517 22-273 (412)
96 2gno_A DNA polymerase III, gam 99.2 7.7E-11 2.6E-15 123.5 14.6 146 294-470 1-152 (305)
97 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 8.4E-11 2.9E-15 131.0 13.9 203 290-520 22-269 (500)
98 3vkg_A Dynein heavy chain, cyt 99.2 4.7E-10 1.6E-14 145.7 19.7 140 310-473 1303-1472(3245)
99 2qen_A Walker-type ATPase; unk 99.1 1.6E-09 5.4E-14 115.6 18.9 183 290-496 12-238 (350)
100 3vkg_A Dynein heavy chain, cyt 99.1 8.9E-09 3E-13 134.0 27.4 135 297-466 592-749 (3245)
101 1g41_A Heat shock protein HSLU 99.0 2.2E-10 7.5E-15 124.9 8.5 88 621-722 7-100 (444)
102 3f9v_A Minichromosome maintena 99.0 3E-11 1E-15 138.1 0.1 202 289-515 294-535 (595)
103 3hws_A ATP-dependent CLP prote 99.0 2.7E-10 9.4E-15 122.8 5.5 84 621-718 7-96 (363)
104 2fna_A Conserved hypothetical 99.0 3.7E-09 1.3E-13 112.9 13.7 178 290-496 13-242 (357)
105 1um8_A ATP-dependent CLP prote 98.9 5.6E-10 1.9E-14 120.9 6.8 77 620-699 12-109 (376)
106 1ny5_A Transcriptional regulat 98.9 9.4E-09 3.2E-13 111.5 15.6 180 289-491 136-349 (387)
107 3cf0_A Transitional endoplasmi 98.9 5.6E-10 1.9E-14 117.1 5.5 64 631-701 17-88 (301)
108 3dzd_A Transcriptional regulat 98.9 3.7E-09 1.2E-13 113.9 11.7 178 290-491 129-340 (368)
109 2x8a_A Nuclear valosin-contain 98.9 3.5E-10 1.2E-14 116.8 3.2 78 611-701 6-83 (274)
110 1xwi_A SKD1 protein; VPS4B, AA 98.9 1.5E-09 5.2E-14 114.8 7.7 78 631-723 14-95 (322)
111 1ofh_A ATP-dependent HSL prote 98.9 1.7E-09 5.8E-14 113.4 8.0 77 621-700 7-88 (310)
112 2c9o_A RUVB-like 1; hexameric 98.9 1.6E-09 5.4E-14 120.4 7.7 69 628-701 36-104 (456)
113 3t15_A Ribulose bisphosphate c 98.9 1E-09 3.5E-14 114.6 5.3 66 632-701 10-75 (293)
114 3eie_A Vacuolar protein sortin 98.9 1.2E-09 4E-14 115.7 5.0 68 631-701 20-90 (322)
115 3m6a_A ATP-dependent protease 98.9 1E-09 3.6E-14 124.3 4.7 120 592-721 45-164 (543)
116 3syl_A Protein CBBX; photosynt 98.8 2.8E-09 9.5E-14 112.0 6.9 82 619-701 21-113 (309)
117 2w58_A DNAI, primosome compone 98.8 2.6E-08 8.9E-13 97.6 10.6 100 282-394 17-127 (202)
118 2qp9_X Vacuolar protein sortin 98.8 3.2E-09 1.1E-13 114.0 4.2 68 630-701 52-123 (355)
119 3cmw_A Protein RECA, recombina 98.8 4.5E-08 1.5E-12 121.7 14.9 41 661-701 1084-1124(1706)
120 2ce7_A Cell division protein F 98.7 7.6E-09 2.6E-13 114.4 7.1 65 630-701 17-88 (476)
121 1lv7_A FTSH; alpha/beta domain 98.7 9.4E-09 3.2E-13 105.0 7.3 65 630-701 13-84 (257)
122 2qz4_A Paraplegin; AAA+, SPG7, 98.7 8.3E-09 2.8E-13 105.5 6.9 66 629-701 6-78 (262)
123 2zan_A Vacuolar protein sortin 98.7 8.3E-09 2.9E-13 114.0 6.3 78 631-723 136-217 (444)
124 3ec2_A DNA replication protein 98.7 1.3E-08 4.4E-13 97.9 6.9 100 283-394 3-112 (180)
125 3b9p_A CG5977-PA, isoform A; A 98.7 1.1E-08 3.9E-13 106.7 6.0 66 630-701 22-93 (297)
126 2r62_A Cell division protease 98.7 8.7E-09 3E-13 105.9 4.9 65 630-701 12-83 (268)
127 3h4m_A Proteasome-activating n 98.7 1.1E-08 3.9E-13 105.9 5.8 64 631-701 19-90 (285)
128 3f8t_A Predicted ATPase involv 98.6 9.4E-08 3.2E-12 103.5 11.6 144 289-461 212-385 (506)
129 2bjv_A PSP operon transcriptio 98.6 3.5E-08 1.2E-12 101.2 8.0 81 630-717 7-88 (265)
130 3fes_A ATP-dependent CLP endop 98.6 4.9E-08 1.7E-12 90.5 7.8 64 170-233 7-70 (145)
131 3fh2_A Probable ATP-dependent 98.6 7.5E-08 2.6E-12 89.3 8.1 64 170-233 6-69 (146)
132 3d8b_A Fidgetin-like protein 1 98.6 2.5E-08 8.6E-13 107.0 5.5 69 630-701 85-156 (357)
133 2dhr_A FTSH; AAA+ protein, hex 98.6 4.4E-08 1.5E-12 108.9 6.9 65 630-701 32-103 (499)
134 3hu3_A Transitional endoplasmi 98.6 2E-08 6.9E-13 111.8 4.1 65 630-701 205-277 (489)
135 1khy_A CLPB protein; alpha hel 98.6 1.1E-07 3.9E-12 88.2 8.6 64 170-233 5-68 (148)
136 3vfd_A Spastin; ATPase, microt 98.6 4.2E-08 1.4E-12 106.6 6.4 69 630-701 116-187 (389)
137 2kjq_A DNAA-related protein; s 98.5 9.2E-08 3.2E-12 89.0 6.9 106 310-450 35-140 (149)
138 3zri_A CLPB protein, CLPV; cha 98.5 1.1E-07 3.8E-12 90.2 7.6 63 170-233 24-86 (171)
139 2y1q_A CLPC N-domain, negative 98.5 1.4E-07 4.9E-12 87.8 7.8 64 170-233 5-68 (150)
140 1jr3_D DNA polymerase III, del 98.5 1E-06 3.5E-11 93.8 14.5 170 306-515 13-190 (343)
141 2qgz_A Helicase loader, putati 98.5 1.2E-07 4.1E-12 99.5 6.5 98 284-394 118-226 (308)
142 3n70_A Transport activator; si 98.5 1.8E-07 6.3E-12 86.5 6.4 64 630-701 2-65 (145)
143 2r44_A Uncharacterized protein 98.4 3.4E-07 1.1E-11 97.1 8.9 65 619-697 17-81 (331)
144 1ixz_A ATP-dependent metallopr 98.4 1.8E-07 6.3E-12 95.1 4.7 63 631-700 18-87 (254)
145 1ojl_A Transcriptional regulat 98.4 5.8E-07 2E-11 94.0 8.5 77 630-713 3-79 (304)
146 3nbx_X ATPase RAVA; AAA+ ATPas 98.4 4.5E-07 1.5E-11 100.9 7.9 81 617-713 10-90 (500)
147 3uk6_A RUVB-like 2; hexameric 98.4 5.6E-07 1.9E-11 96.7 8.3 67 629-700 44-110 (368)
148 1k6k_A ATP-dependent CLP prote 98.3 5E-07 1.7E-11 83.3 6.5 62 171-234 2-63 (143)
149 1sxj_A Activator 1 95 kDa subu 98.3 1.3E-06 4.5E-11 98.3 9.5 77 630-709 40-124 (516)
150 1tue_A Replication protein E1; 98.3 1.5E-06 5.1E-11 84.0 8.3 120 298-457 44-179 (212)
151 3cmu_A Protein RECA, recombina 98.3 5.6E-06 1.9E-10 104.3 15.4 43 661-703 1429-1471(2050)
152 3pfi_A Holliday junction ATP-d 98.3 1.3E-06 4.5E-11 92.7 8.6 72 630-708 30-101 (338)
153 1iy2_A ATP-dependent metallopr 98.2 5.6E-07 1.9E-11 92.9 4.9 63 631-700 42-111 (278)
154 1d2n_A N-ethylmaleimide-sensit 98.2 4.3E-07 1.5E-11 93.4 3.4 66 626-697 30-99 (272)
155 2qby_B CDC6 homolog 3, cell di 98.2 1.5E-06 5.1E-11 93.8 6.8 86 629-719 20-119 (384)
156 3co5_A Putative two-component 98.2 5.8E-07 2E-11 82.9 2.5 61 630-701 5-65 (143)
157 1hqc_A RUVB; extended AAA-ATPa 98.1 3.6E-06 1.2E-10 88.6 7.8 72 629-707 12-83 (324)
158 1in4_A RUVB, holliday junction 98.1 4.4E-06 1.5E-10 88.6 8.3 69 631-706 27-95 (334)
159 2r2a_A Uncharacterized protein 98.1 5.6E-06 1.9E-10 80.7 7.2 133 313-458 7-154 (199)
160 3pxg_A Negative regulator of g 98.0 6.1E-06 2.1E-10 91.6 7.4 64 170-233 5-68 (468)
161 3pvs_A Replication-associated 98.0 5.8E-06 2E-10 91.1 6.7 58 629-698 26-86 (447)
162 1jbk_A CLPB protein; beta barr 98.0 3.6E-06 1.2E-10 80.6 4.5 63 628-699 21-90 (195)
163 3u61_B DNA polymerase accessor 98.0 9E-06 3.1E-10 85.6 7.7 60 629-699 26-85 (324)
164 2p65_A Hypothetical protein PF 98.0 4.4E-06 1.5E-10 79.7 4.8 63 628-699 21-90 (187)
165 1sxj_C Activator 1 40 kDa subu 98.0 7.3E-06 2.5E-10 87.1 6.6 70 630-708 26-97 (340)
166 2vhj_A Ntpase P4, P4; non- hyd 98.0 1E-05 3.6E-10 83.8 7.4 109 311-433 123-236 (331)
167 3te6_A Regulatory protein SIR3 97.9 6.8E-06 2.3E-10 85.8 5.7 69 631-704 22-97 (318)
168 2chg_A Replication factor C sm 97.9 1.2E-05 4E-10 79.0 6.9 68 630-706 18-87 (226)
169 1ye8_A Protein THEP1, hypothet 97.9 6E-05 2.1E-09 72.0 11.5 68 380-462 97-168 (178)
170 1z6t_A APAF-1, apoptotic prote 97.9 6.7E-05 2.3E-09 85.9 13.8 49 286-334 120-170 (591)
171 1iqp_A RFCS; clamp loader, ext 97.9 7.7E-06 2.6E-10 85.9 5.4 61 629-698 25-87 (327)
172 2w58_A DNAI, primosome compone 97.9 1.2E-05 4E-10 78.5 5.9 40 661-700 56-95 (202)
173 1u0j_A DNA replication protein 97.9 4.7E-05 1.6E-09 77.0 10.4 38 298-335 89-128 (267)
174 3upu_A ATP-dependent DNA helic 97.8 6.8E-05 2.3E-09 83.0 11.9 61 277-338 11-72 (459)
175 2chq_A Replication factor C sm 97.8 6.7E-06 2.3E-10 86.1 3.2 62 630-700 18-81 (319)
176 2v1u_A Cell division control p 97.8 1.9E-05 6.6E-10 84.8 6.4 84 629-717 19-112 (387)
177 1sxj_D Activator 1 41 kDa subu 97.8 1.1E-05 3.7E-10 85.9 4.2 63 629-700 37-102 (353)
178 3ec2_A DNA replication protein 97.8 1.3E-05 4.5E-10 76.6 4.3 41 661-701 40-81 (180)
179 3bos_A Putative DNA replicatio 97.8 2.9E-05 9.9E-10 77.4 6.8 41 661-701 54-94 (242)
180 1sxj_B Activator 1 37 kDa subu 97.7 1.2E-05 4.1E-10 84.3 3.5 68 629-705 21-90 (323)
181 1fnn_A CDC6P, cell division co 97.7 7.1E-05 2.4E-09 80.5 9.0 70 629-701 17-87 (389)
182 1l8q_A Chromosomal replication 97.6 3.3E-05 1.1E-09 81.4 4.9 40 661-700 39-78 (324)
183 2a5y_B CED-4; apoptosis; HET: 97.6 0.0004 1.4E-08 78.7 14.2 41 293-333 131-174 (549)
184 1sxj_E Activator 1 40 kDa subu 97.6 2.1E-05 7.3E-10 83.7 3.3 51 630-688 15-65 (354)
185 2orw_A Thymidine kinase; TMTK, 97.6 2.8E-05 9.5E-10 74.8 3.4 25 313-337 5-29 (184)
186 1njg_A DNA polymerase III subu 97.6 6.6E-05 2.3E-09 74.5 6.2 48 629-684 23-70 (250)
187 1g8p_A Magnesium-chelatase 38 97.6 3.2E-05 1.1E-09 82.1 3.9 45 630-683 25-69 (350)
188 2gno_A DNA polymerase III, gam 97.6 9.1E-05 3.1E-09 77.2 7.1 55 633-696 1-58 (305)
189 2qgz_A Helicase loader, putati 97.6 3.8E-05 1.3E-09 80.3 4.1 40 661-700 154-194 (308)
190 2qby_A CDC6 homolog 1, cell di 97.5 4.1E-05 1.4E-09 82.2 4.4 67 629-700 20-89 (386)
191 1tue_A Replication protein E1; 97.5 9.7E-05 3.3E-09 71.4 6.4 25 661-685 60-84 (212)
192 3sfz_A APAF-1, apoptotic pepti 97.5 0.00055 1.9E-08 85.1 15.0 51 285-335 119-171 (1249)
193 1a5t_A Delta prime, HOLB; zinc 97.5 0.00019 6.5E-09 75.9 8.8 48 631-686 4-51 (334)
194 1jr3_A DNA polymerase III subu 97.5 9.3E-05 3.2E-09 79.2 6.4 48 629-684 16-63 (373)
195 3k1j_A LON protease, ATP-depen 97.5 9.4E-05 3.2E-09 84.8 6.4 58 630-698 42-99 (604)
196 2z4s_A Chromosomal replication 97.4 6.1E-05 2.1E-09 82.9 4.2 40 661-700 132-173 (440)
197 2kjq_A DNAA-related protein; s 97.4 7.7E-05 2.6E-09 69.1 4.0 41 661-701 38-78 (149)
198 3e1s_A Exodeoxyribonuclease V, 97.4 0.0064 2.2E-07 68.8 20.1 51 172-233 71-122 (574)
199 1ny5_A Transcriptional regulat 97.4 0.00033 1.1E-08 75.6 9.0 77 630-713 138-214 (387)
200 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00038 1.3E-08 68.8 8.8 28 309-336 21-48 (235)
201 3f9v_A Minichromosome maintena 97.4 2.1E-05 7.3E-10 89.7 -0.5 64 620-683 286-351 (595)
202 3cmu_A Protein RECA, recombina 97.4 0.00063 2.1E-08 86.1 12.1 82 308-396 1424-1519(2050)
203 1vt4_I APAF-1 related killer D 97.4 0.0012 4.1E-08 78.3 13.7 42 292-333 130-172 (1221)
204 3cmw_A Protein RECA, recombina 97.4 0.00042 1.4E-08 86.6 10.3 80 311-397 1082-1175(1706)
205 2b8t_A Thymidine kinase; deoxy 97.3 0.00051 1.8E-08 67.9 8.8 26 312-337 13-38 (223)
206 1u0j_A DNA replication protein 97.3 0.00011 3.8E-09 74.2 3.3 23 660-682 105-127 (267)
207 2cvh_A DNA repair and recombin 97.2 0.00045 1.5E-08 67.8 6.4 25 309-333 18-42 (220)
208 2cdn_A Adenylate kinase; phosp 97.2 0.0003 1E-08 68.3 4.9 32 651-683 13-44 (201)
209 1gvn_B Zeta; postsegregational 97.1 0.00067 2.3E-08 70.0 7.5 32 661-695 35-66 (287)
210 2r8r_A Sensor protein; KDPD, P 97.1 0.0031 1.1E-07 61.9 11.7 39 309-354 4-42 (228)
211 3trf_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 67.2 4.3 30 661-693 7-36 (185)
212 1qhx_A CPT, protein (chloramph 97.1 0.00029 9.9E-09 66.8 4.1 35 661-698 5-39 (178)
213 3vaa_A Shikimate kinase, SK; s 97.1 0.00034 1.2E-08 67.9 4.4 33 661-698 27-59 (199)
214 2p5t_B PEZT; postsegregational 97.1 0.0007 2.4E-08 68.5 6.8 36 660-698 33-68 (253)
215 1w5s_A Origin recognition comp 97.0 0.00047 1.6E-08 74.7 5.4 70 629-701 22-100 (412)
216 1knq_A Gluconate kinase; ALFA/ 97.0 0.00092 3.1E-08 63.2 6.8 36 660-700 9-44 (175)
217 2iut_A DNA translocase FTSK; n 97.0 0.0051 1.7E-07 68.7 13.6 142 311-467 214-420 (574)
218 3dm5_A SRP54, signal recogniti 97.0 0.018 6E-07 62.6 17.1 77 311-394 100-194 (443)
219 1n0w_A DNA repair protein RAD5 97.0 0.0017 5.9E-08 64.6 8.6 87 309-396 22-133 (243)
220 2rhm_A Putative kinase; P-loop 96.9 0.00056 1.9E-08 65.6 4.4 30 661-693 7-36 (193)
221 2ze6_A Isopentenyl transferase 96.9 0.00063 2.2E-08 68.8 4.5 32 661-695 3-34 (253)
222 1via_A Shikimate kinase; struc 96.9 0.00057 2E-08 64.7 3.8 33 661-698 6-38 (175)
223 3kb2_A SPBC2 prophage-derived 96.9 0.00073 2.5E-08 63.4 4.5 35 661-700 3-37 (173)
224 2dr3_A UPF0273 protein PH0284; 96.9 0.0028 9.7E-08 63.1 9.2 28 309-336 21-48 (247)
225 2ehv_A Hypothetical protein PH 96.8 0.0035 1.2E-07 62.6 9.6 26 309-334 28-53 (251)
226 1xp8_A RECA protein, recombina 96.8 0.0039 1.3E-07 66.4 10.3 80 309-396 72-166 (366)
227 1qhx_A CPT, protein (chloramph 96.8 0.0021 7.3E-08 60.7 7.5 24 312-335 4-27 (178)
228 3umf_A Adenylate kinase; rossm 96.8 0.00049 1.7E-08 67.7 3.1 35 661-700 31-65 (217)
229 3dzd_A Transcriptional regulat 96.8 0.0023 7.7E-08 68.5 8.4 75 631-713 131-205 (368)
230 3iij_A Coilin-interacting nucl 96.8 0.00071 2.4E-08 64.3 3.9 33 661-698 13-45 (180)
231 2iyv_A Shikimate kinase, SK; t 96.8 0.00074 2.5E-08 64.4 4.0 31 661-694 4-34 (184)
232 3sr0_A Adenylate kinase; phosp 96.8 0.00057 2E-08 66.8 3.0 35 661-700 2-36 (206)
233 1y63_A LMAJ004144AAA protein; 96.7 0.001 3.6E-08 63.5 4.3 36 661-700 12-47 (184)
234 1zuh_A Shikimate kinase; alpha 96.7 0.001 3.4E-08 62.5 4.1 30 661-693 9-38 (168)
235 1kag_A SKI, shikimate kinase I 96.7 0.0009 3.1E-08 63.0 3.7 33 661-698 6-38 (173)
236 4eun_A Thermoresistant glucoki 96.7 0.0017 5.7E-08 63.0 5.6 36 661-701 31-66 (200)
237 1ak2_A Adenylate kinase isoenz 96.7 0.0011 3.9E-08 65.9 4.5 34 661-699 18-51 (233)
238 1zp6_A Hypothetical protein AT 96.7 0.00077 2.6E-08 64.6 3.1 35 661-698 11-45 (191)
239 1nks_A Adenylate kinase; therm 96.7 0.00074 2.5E-08 64.7 2.9 39 661-699 3-41 (194)
240 3lda_A DNA repair protein RAD5 96.6 0.0044 1.5E-07 66.8 9.2 117 309-430 176-325 (400)
241 3hr8_A Protein RECA; alpha and 96.6 0.0076 2.6E-07 63.8 10.8 80 310-396 60-153 (356)
242 1aky_A Adenylate kinase; ATP:A 96.6 0.0012 4.1E-08 65.0 4.3 34 661-699 6-39 (220)
243 1tev_A UMP-CMP kinase; ploop, 96.6 0.0011 3.8E-08 63.5 4.0 23 661-683 5-27 (196)
244 1e6c_A Shikimate kinase; phosp 96.6 0.0011 3.8E-08 62.3 3.8 23 661-683 4-26 (173)
245 3lw7_A Adenylate kinase relate 96.6 0.001 3.5E-08 62.4 3.5 35 661-701 3-37 (179)
246 1g5t_A COB(I)alamin adenosyltr 96.6 0.0097 3.3E-07 57.1 10.3 29 310-338 27-55 (196)
247 3t61_A Gluconokinase; PSI-biol 96.6 0.0014 4.7E-08 63.6 4.4 35 661-700 20-54 (202)
248 2i3b_A HCR-ntpase, human cance 96.6 0.0014 4.6E-08 63.2 4.3 24 313-336 3-26 (189)
249 1ukz_A Uridylate kinase; trans 96.6 0.0013 4.5E-08 63.7 4.2 33 661-698 17-49 (203)
250 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.9E-08 63.6 3.7 23 661-683 11-33 (196)
251 2z43_A DNA repair and recombin 96.6 0.0041 1.4E-07 65.3 8.2 87 309-396 105-217 (324)
252 3cm0_A Adenylate kinase; ATP-b 96.6 0.0011 3.7E-08 63.2 3.4 34 661-699 6-39 (186)
253 1zd8_A GTP:AMP phosphotransfer 96.6 0.0012 4.2E-08 65.3 3.9 34 661-699 9-42 (227)
254 3uie_A Adenylyl-sulfate kinase 96.5 0.0016 5.4E-08 63.2 4.4 38 661-698 27-64 (200)
255 3trf_A Shikimate kinase, SK; a 96.5 0.0012 4.1E-08 62.9 3.5 25 311-335 5-29 (185)
256 1kht_A Adenylate kinase; phosp 96.5 0.0011 3.6E-08 63.5 3.1 39 661-699 5-43 (192)
257 2bwj_A Adenylate kinase 5; pho 96.5 0.0014 4.6E-08 63.2 3.7 34 661-699 14-47 (199)
258 2pt5_A Shikimate kinase, SK; a 96.5 0.0015 5.3E-08 61.0 4.0 30 661-693 2-31 (168)
259 3jvv_A Twitching mobility prot 96.5 0.0019 6.6E-08 68.5 5.1 29 309-337 121-149 (356)
260 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0015 5E-08 68.8 4.1 23 661-683 26-48 (359)
261 3uie_A Adenylyl-sulfate kinase 96.5 0.013 4.6E-07 56.5 10.8 28 309-336 23-50 (200)
262 1zak_A Adenylate kinase; ATP:A 96.5 0.0012 4.1E-08 65.1 3.3 34 661-699 7-40 (222)
263 4a74_A DNA repair and recombin 96.5 0.0062 2.1E-07 59.9 8.6 26 310-335 24-49 (231)
264 3be4_A Adenylate kinase; malar 96.5 0.0014 4.8E-08 64.5 3.7 23 661-683 7-29 (217)
265 1svm_A Large T antigen; AAA+ f 96.5 0.0033 1.1E-07 67.2 6.8 34 661-697 171-204 (377)
266 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0017 6E-08 67.2 4.5 38 661-699 125-162 (331)
267 3crm_A TRNA delta(2)-isopenten 96.5 0.0015 5.2E-08 68.0 4.0 31 661-694 7-37 (323)
268 3fb4_A Adenylate kinase; psych 96.4 0.0017 5.7E-08 63.7 4.0 23 661-683 2-24 (216)
269 1ly1_A Polynucleotide kinase; 96.4 0.00098 3.4E-08 63.0 2.2 22 661-682 4-25 (181)
270 1qf9_A UMP/CMP kinase, protein 96.4 0.0016 5.5E-08 62.2 3.7 33 661-698 8-40 (194)
271 2zr9_A Protein RECA, recombina 96.4 0.0042 1.4E-07 65.8 7.3 78 310-395 60-152 (349)
272 3dl0_A Adenylate kinase; phosp 96.4 0.0016 5.4E-08 63.9 3.7 34 661-699 2-35 (216)
273 2vli_A Antibiotic resistance p 96.4 0.0014 4.9E-08 62.2 3.2 28 661-691 7-34 (183)
274 2fz4_A DNA repair protein RAD2 96.4 0.009 3.1E-07 59.5 9.1 24 312-335 109-132 (237)
275 2ius_A DNA translocase FTSK; n 96.4 0.017 5.9E-07 63.9 12.1 72 384-467 299-374 (512)
276 3vaa_A Shikimate kinase, SK; s 96.4 0.0017 5.7E-08 63.0 3.6 26 310-335 24-49 (199)
277 3crm_A TRNA delta(2)-isopenten 96.4 0.0055 1.9E-07 63.8 7.5 95 313-432 7-104 (323)
278 3iij_A Coilin-interacting nucl 96.3 0.0025 8.5E-08 60.5 4.5 26 310-335 10-35 (180)
279 1e4v_A Adenylate kinase; trans 96.3 0.0021 7.2E-08 63.0 3.9 23 661-683 2-24 (214)
280 3lxw_A GTPase IMAP family memb 96.3 0.0087 3E-07 60.1 8.5 23 311-333 21-43 (247)
281 3tlx_A Adenylate kinase 2; str 96.3 0.0035 1.2E-07 62.8 5.4 34 661-699 31-64 (243)
282 2ze6_A Isopentenyl transferase 96.3 0.0057 1.9E-07 61.7 6.9 23 313-335 3-25 (253)
283 3a8t_A Adenylate isopentenyltr 96.2 0.0017 5.9E-08 67.8 2.8 31 661-694 42-72 (339)
284 3kb2_A SPBC2 prophage-derived 96.2 0.0029 9.8E-08 59.3 4.0 23 313-335 3-25 (173)
285 1v5w_A DMC1, meiotic recombina 96.2 0.0092 3.1E-07 63.1 8.4 87 309-396 120-233 (343)
286 1via_A Shikimate kinase; struc 96.2 0.003 1E-07 59.6 4.0 24 312-335 5-28 (175)
287 3foz_A TRNA delta(2)-isopenten 96.2 0.0031 1.1E-07 65.0 4.4 32 661-695 12-43 (316)
288 1u94_A RECA protein, recombina 96.2 0.0082 2.8E-07 63.7 7.8 80 309-396 61-155 (356)
289 2xb4_A Adenylate kinase; ATP-b 96.2 0.0027 9.2E-08 62.7 3.8 23 661-683 2-24 (223)
290 3kl4_A SRP54, signal recogniti 96.2 0.029 1E-06 60.8 12.2 76 312-394 98-191 (433)
291 3nwj_A ATSK2; P loop, shikimat 96.2 0.0033 1.1E-07 63.2 4.4 33 661-698 50-82 (250)
292 1zuh_A Shikimate kinase; alpha 96.1 0.0027 9.1E-08 59.5 3.3 26 310-335 6-31 (168)
293 2pez_A Bifunctional 3'-phospho 96.1 0.0033 1.1E-07 59.5 4.0 35 661-695 7-41 (179)
294 2fna_A Conserved hypothetical 96.1 0.0038 1.3E-07 65.7 4.8 53 630-698 14-66 (357)
295 2iyv_A Shikimate kinase, SK; t 96.1 0.0034 1.1E-07 59.7 3.9 24 312-335 3-26 (184)
296 2zts_A Putative uncharacterize 96.1 0.014 4.7E-07 58.1 8.7 26 309-334 28-53 (251)
297 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0035 1.2E-07 63.5 4.2 36 661-696 6-41 (260)
298 1y63_A LMAJ004144AAA protein; 96.1 0.0029 9.9E-08 60.4 3.2 25 310-334 9-33 (184)
299 2yvu_A Probable adenylyl-sulfa 96.1 0.0049 1.7E-07 58.8 4.8 35 661-695 15-49 (186)
300 1ye8_A Protein THEP1, hypothet 96.0 0.0035 1.2E-07 59.7 3.5 23 661-683 2-24 (178)
301 1kag_A SKI, shikimate kinase I 96.0 0.0039 1.3E-07 58.5 3.8 25 311-335 4-28 (173)
302 2if2_A Dephospho-COA kinase; a 96.0 0.0034 1.2E-07 60.8 3.4 22 661-683 3-24 (204)
303 2jaq_A Deoxyguanosine kinase; 96.0 0.0043 1.5E-07 59.8 4.1 23 661-683 2-24 (205)
304 2qen_A Walker-type ATPase; unk 96.0 0.0069 2.4E-07 63.6 6.1 52 630-697 13-64 (350)
305 1w4r_A Thymidine kinase; type 96.0 0.0077 2.6E-07 57.7 5.7 25 313-337 22-47 (195)
306 3foz_A TRNA delta(2)-isopenten 96.0 0.011 3.8E-07 60.8 7.3 93 313-433 12-110 (316)
307 3a8t_A Adenylate isopentenyltr 95.9 0.0066 2.3E-07 63.4 5.6 25 311-335 40-64 (339)
308 3tqf_A HPR(Ser) kinase; transf 95.9 0.0023 8E-08 59.8 1.9 47 661-713 18-64 (181)
309 3exa_A TRNA delta(2)-isopenten 95.9 0.012 4E-07 60.8 7.3 97 313-433 5-103 (322)
310 2bbw_A Adenylate kinase 4, AK4 95.9 0.0021 7.3E-08 64.4 1.8 23 661-683 29-51 (246)
311 1xx6_A Thymidine kinase; NESG, 95.9 0.007 2.4E-07 58.2 5.3 25 313-337 10-34 (191)
312 3bh0_A DNAB-like replicative h 95.9 0.033 1.1E-06 58.0 10.9 29 309-337 66-94 (315)
313 2rhm_A Putative kinase; P-loop 95.9 0.0034 1.2E-07 60.0 3.1 25 311-335 5-29 (193)
314 2r6a_A DNAB helicase, replicat 95.9 0.013 4.6E-07 64.3 8.2 29 309-337 201-229 (454)
315 1nlf_A Regulatory protein REPA 95.9 0.025 8.6E-07 57.7 9.7 30 309-338 28-57 (279)
316 3f8t_A Predicted ATPase involv 95.9 0.0069 2.4E-07 65.7 5.6 77 590-683 186-263 (506)
317 1pzn_A RAD51, DNA repair and r 95.9 0.014 4.7E-07 61.8 7.9 27 309-335 129-155 (349)
318 1rz3_A Hypothetical protein rb 95.9 0.0097 3.3E-07 57.6 6.2 36 661-696 24-59 (201)
319 3exa_A TRNA delta(2)-isopenten 95.9 0.0039 1.3E-07 64.3 3.4 31 661-694 5-35 (322)
320 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.016 5.3E-07 58.6 7.9 27 311-337 4-30 (260)
321 1e6c_A Shikimate kinase; phosp 95.9 0.0054 1.9E-07 57.5 4.2 24 312-335 3-26 (173)
322 3lxx_A GTPase IMAP family memb 95.9 0.022 7.4E-07 56.6 8.9 24 311-334 29-52 (239)
323 3c8u_A Fructokinase; YP_612366 95.9 0.0066 2.3E-07 59.1 4.9 38 661-698 24-63 (208)
324 3r20_A Cytidylate kinase; stru 95.8 0.0056 1.9E-07 60.8 4.2 34 661-699 11-44 (233)
325 3hr8_A Protein RECA; alpha and 95.8 0.0084 2.9E-07 63.4 5.9 50 661-711 63-112 (356)
326 3t61_A Gluconokinase; PSI-biol 95.8 0.0061 2.1E-07 58.9 4.5 25 311-335 18-42 (202)
327 1nks_A Adenylate kinase; therm 95.8 0.0068 2.3E-07 57.8 4.8 24 313-336 3-26 (194)
328 2plr_A DTMP kinase, probable t 95.8 0.0071 2.4E-07 58.6 4.9 23 661-683 6-28 (213)
329 2qor_A Guanylate kinase; phosp 95.8 0.0044 1.5E-07 60.2 3.3 23 661-683 14-36 (204)
330 2p5t_B PEZT; postsegregational 95.8 0.021 7.1E-07 57.4 8.4 24 312-335 33-56 (253)
331 2wwf_A Thymidilate kinase, put 95.8 0.0031 1.1E-07 61.3 2.1 23 661-683 12-34 (212)
332 2pbr_A DTMP kinase, thymidylat 95.8 0.0059 2E-07 58.3 4.0 35 661-695 2-36 (195)
333 2c95_A Adenylate kinase 1; tra 95.8 0.0053 1.8E-07 58.8 3.7 26 310-335 8-33 (196)
334 1aky_A Adenylate kinase; ATP:A 95.7 0.0056 1.9E-07 60.1 3.8 26 310-335 3-28 (220)
335 2cdn_A Adenylate kinase; phosp 95.7 0.0055 1.9E-07 59.2 3.7 25 311-335 20-44 (201)
336 1kgd_A CASK, peripheral plasma 95.7 0.0049 1.7E-07 58.5 3.2 23 661-683 7-29 (180)
337 4a74_A DNA repair and recombin 95.7 0.011 3.8E-07 58.0 5.9 40 661-700 27-72 (231)
338 2q6t_A DNAB replication FORK h 95.7 0.015 5.2E-07 63.7 7.6 28 310-337 199-226 (444)
339 3d3q_A TRNA delta(2)-isopenten 95.7 0.0057 1.9E-07 64.1 3.9 31 661-694 9-39 (340)
340 1m7g_A Adenylylsulfate kinase; 95.7 0.0049 1.7E-07 60.2 3.2 35 661-695 27-62 (211)
341 1cke_A CK, MSSA, protein (cyti 95.7 0.0059 2E-07 60.1 3.8 34 661-699 7-40 (227)
342 3lw7_A Adenylate kinase relate 95.7 0.0051 1.7E-07 57.5 3.2 22 313-335 3-24 (179)
343 1vma_A Cell division protein F 95.7 0.029 9.8E-07 58.1 9.1 27 311-337 104-130 (306)
344 3io5_A Recombination and repai 95.7 0.022 7.5E-07 58.8 8.0 79 313-396 30-125 (333)
345 3upu_A ATP-dependent DNA helic 95.6 0.0076 2.6E-07 66.4 4.9 45 633-687 29-73 (459)
346 1m7g_A Adenylylsulfate kinase; 95.6 0.027 9.3E-07 54.7 8.4 30 307-336 21-50 (211)
347 2r8r_A Sensor protein; KDPD, P 95.6 0.017 5.7E-07 56.8 6.6 58 660-717 7-67 (228)
348 2bdt_A BH3686; alpha-beta prot 95.6 0.0057 2E-07 58.4 3.3 34 661-698 4-37 (189)
349 2eyu_A Twitching motility prot 95.6 0.024 8.3E-07 57.3 8.1 29 308-336 22-50 (261)
350 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.014 4.6E-07 61.4 6.2 26 310-335 170-195 (330)
351 2yvu_A Probable adenylyl-sulfa 95.6 0.008 2.7E-07 57.2 4.1 28 310-337 12-39 (186)
352 1nn5_A Similar to deoxythymidy 95.5 0.008 2.7E-07 58.5 4.1 23 661-683 11-33 (215)
353 1jjv_A Dephospho-COA kinase; P 95.5 0.006 2.1E-07 59.1 3.2 21 661-681 4-24 (206)
354 2qmh_A HPR kinase/phosphorylas 95.5 0.0054 1.9E-07 58.9 2.7 47 661-712 36-82 (205)
355 1kht_A Adenylate kinase; phosp 95.5 0.0061 2.1E-07 58.0 3.1 25 312-336 4-28 (192)
356 4eun_A Thermoresistant glucoki 95.5 0.0085 2.9E-07 57.9 4.1 27 309-335 27-53 (200)
357 2i1q_A DNA repair and recombin 95.5 0.015 5.1E-07 60.8 6.3 27 309-335 96-122 (322)
358 2v54_A DTMP kinase, thymidylat 95.5 0.0075 2.6E-07 58.2 3.7 34 661-696 6-39 (204)
359 2pt5_A Shikimate kinase, SK; a 95.5 0.0073 2.5E-07 56.3 3.5 23 313-335 2-24 (168)
360 3cm0_A Adenylate kinase; ATP-b 95.5 0.0067 2.3E-07 57.6 3.3 24 312-335 5-28 (186)
361 1tev_A UMP-CMP kinase; ploop, 95.5 0.0077 2.6E-07 57.4 3.7 24 312-335 4-27 (196)
362 1knq_A Gluconate kinase; ALFA/ 95.5 0.0078 2.7E-07 56.6 3.7 25 311-335 8-32 (175)
363 3tr0_A Guanylate kinase, GMP k 95.5 0.0068 2.3E-07 58.5 3.3 33 661-698 9-41 (205)
364 3tau_A Guanylate kinase, GMP k 95.5 0.0057 1.9E-07 59.6 2.7 23 661-683 10-32 (208)
365 3dl0_A Adenylate kinase; phosp 95.5 0.0057 1.9E-07 59.8 2.7 23 313-335 2-24 (216)
366 1w36_D RECD, exodeoxyribonucle 95.5 0.059 2E-06 61.5 11.6 27 311-337 164-190 (608)
367 1ak2_A Adenylate kinase isoenz 95.5 0.0083 2.8E-07 59.5 3.9 26 310-335 15-40 (233)
368 3fb4_A Adenylate kinase; psych 95.4 0.0076 2.6E-07 58.9 3.5 23 313-335 2-24 (216)
369 3tlx_A Adenylate kinase 2; str 95.4 0.013 4.4E-07 58.6 5.3 26 310-335 28-53 (243)
370 2grj_A Dephospho-COA kinase; T 95.4 0.0088 3E-07 57.6 3.9 33 661-698 14-46 (192)
371 2bwj_A Adenylate kinase 5; pho 95.4 0.0079 2.7E-07 57.7 3.6 25 311-335 12-36 (199)
372 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.008 2.7E-07 59.1 3.7 37 661-697 25-61 (235)
373 1n0w_A DNA repair protein RAD5 95.4 0.017 5.8E-07 57.2 6.1 38 661-698 26-69 (243)
374 1zak_A Adenylate kinase; ATP:A 95.4 0.0072 2.4E-07 59.4 3.2 26 310-335 4-29 (222)
375 2qt1_A Nicotinamide riboside k 95.4 0.008 2.7E-07 58.3 3.5 46 650-699 12-57 (207)
376 1zd8_A GTP:AMP phosphotransfer 95.4 0.007 2.4E-07 59.8 3.1 25 311-335 7-31 (227)
377 3ake_A Cytidylate kinase; CMP 95.4 0.0096 3.3E-07 57.6 4.0 34 661-699 4-37 (208)
378 3be4_A Adenylate kinase; malar 95.4 0.008 2.7E-07 58.9 3.4 25 311-335 5-29 (217)
379 1gvn_B Zeta; postsegregational 95.4 0.012 4E-07 60.6 4.8 25 311-335 33-57 (287)
380 4gp7_A Metallophosphoesterase; 95.4 0.0096 3.3E-07 56.0 3.8 18 661-678 11-28 (171)
381 2f6r_A COA synthase, bifunctio 95.4 0.0095 3.3E-07 61.0 4.1 21 661-681 77-97 (281)
382 2z0h_A DTMP kinase, thymidylat 95.3 0.0087 3E-07 57.3 3.5 34 661-694 2-35 (197)
383 1uj2_A Uridine-cytidine kinase 95.3 0.011 3.8E-07 59.4 4.4 39 661-700 24-68 (252)
384 1uf9_A TT1252 protein; P-loop, 95.3 0.0092 3.2E-07 57.4 3.6 22 661-682 10-31 (203)
385 2j41_A Guanylate kinase; GMP, 95.3 0.0068 2.3E-07 58.6 2.7 23 661-683 8-30 (207)
386 1qf9_A UMP/CMP kinase, protein 95.3 0.0093 3.2E-07 56.8 3.6 24 312-335 7-30 (194)
387 2cvh_A DNA repair and recombin 95.3 0.015 5.1E-07 56.7 5.1 34 661-697 22-55 (220)
388 1htw_A HI0065; nucleotide-bind 95.3 0.014 4.9E-07 54.1 4.7 38 661-700 35-72 (158)
389 1zu4_A FTSY; GTPase, signal re 95.3 0.029 1E-06 58.5 7.6 39 658-696 104-142 (320)
390 1zp6_A Hypothetical protein AT 95.3 0.0062 2.1E-07 58.1 2.3 25 310-334 8-32 (191)
391 3tqc_A Pantothenate kinase; bi 95.3 0.021 7.2E-07 59.5 6.3 23 661-683 94-116 (321)
392 3a00_A Guanylate kinase, GMP k 95.2 0.0091 3.1E-07 57.0 3.3 23 661-683 3-25 (186)
393 3eph_A TRNA isopentenyltransfe 95.2 0.015 5E-07 62.2 5.2 32 661-695 4-35 (409)
394 1ex7_A Guanylate kinase; subst 95.2 0.0095 3.3E-07 56.9 3.3 24 312-335 2-25 (186)
395 3eph_A TRNA isopentenyltransfe 95.2 0.031 1.1E-06 59.7 7.5 23 313-335 4-26 (409)
396 2ga8_A Hypothetical 39.9 kDa p 95.2 0.011 3.7E-07 62.1 3.9 41 296-336 5-49 (359)
397 1ukz_A Uridylate kinase; trans 95.2 0.0087 3E-07 57.8 3.0 25 311-335 15-39 (203)
398 2dr3_A UPF0273 protein PH0284; 95.2 0.014 4.9E-07 57.9 4.6 38 661-698 25-62 (247)
399 1ly1_A Polynucleotide kinase; 95.2 0.0087 3E-07 56.3 2.9 21 313-333 4-24 (181)
400 1u94_A RECA protein, recombina 95.2 0.016 5.5E-07 61.4 5.2 41 661-701 65-105 (356)
401 3d3q_A TRNA delta(2)-isopenten 95.2 0.037 1.3E-06 57.9 7.8 23 313-335 9-31 (340)
402 2qor_A Guanylate kinase; phosp 95.2 0.0098 3.4E-07 57.6 3.2 26 310-335 11-36 (204)
403 1q3t_A Cytidylate kinase; nucl 95.1 0.015 5.1E-07 57.8 4.6 34 661-699 18-51 (236)
404 1e4v_A Adenylate kinase; trans 95.1 0.0094 3.2E-07 58.2 3.0 23 313-335 2-24 (214)
405 2zr9_A Protein RECA, recombina 95.1 0.017 5.7E-07 61.2 5.0 41 661-701 63-103 (349)
406 2f1r_A Molybdopterin-guanine d 95.1 0.0089 3E-07 56.4 2.6 51 661-711 4-62 (171)
407 3io5_A Recombination and repai 95.1 0.017 5.9E-07 59.5 4.9 43 660-702 29-73 (333)
408 3nwj_A ATSK2; P loop, shikimat 95.1 0.015 5E-07 58.5 4.3 25 311-335 48-72 (250)
409 1rz3_A Hypothetical protein rb 95.1 0.031 1.1E-06 53.9 6.6 42 295-336 3-47 (201)
410 2oap_1 GSPE-2, type II secreti 95.1 0.017 6E-07 64.2 5.3 38 661-699 262-300 (511)
411 1kao_A RAP2A; GTP-binding prot 95.1 0.21 7E-06 45.5 12.0 23 312-334 4-26 (167)
412 2h92_A Cytidylate kinase; ross 95.0 0.013 4.6E-07 57.2 3.9 33 661-698 5-37 (219)
413 3b6e_A Interferon-induced heli 95.0 0.052 1.8E-06 52.5 8.2 25 311-335 48-72 (216)
414 1lvg_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 56.8 3.5 23 661-683 6-28 (198)
415 4e22_A Cytidylate kinase; P-lo 95.0 0.014 4.8E-07 58.7 4.1 33 661-698 29-61 (252)
416 2ehv_A Hypothetical protein PH 95.0 0.012 4.2E-07 58.5 3.7 38 661-698 32-70 (251)
417 3zvl_A Bifunctional polynucleo 95.0 0.012 4.2E-07 63.9 3.8 33 661-698 260-292 (416)
418 2ewv_A Twitching motility prot 95.0 0.012 4.2E-07 62.8 3.7 29 308-336 133-161 (372)
419 1x6v_B Bifunctional 3'-phospho 95.0 0.015 5.2E-07 65.9 4.7 35 661-695 54-88 (630)
420 1znw_A Guanylate kinase, GMP k 95.0 0.012 4E-07 57.3 3.3 23 661-683 22-44 (207)
421 3p32_A Probable GTPase RV1496/ 95.0 0.058 2E-06 57.1 9.0 27 311-337 79-105 (355)
422 3ney_A 55 kDa erythrocyte memb 95.0 0.012 4.1E-07 56.8 3.2 23 661-683 21-43 (197)
423 1vht_A Dephospho-COA kinase; s 95.0 0.013 4.4E-07 57.4 3.5 21 661-681 6-26 (218)
424 1gtv_A TMK, thymidylate kinase 95.0 0.0081 2.8E-07 58.4 2.0 23 661-683 2-24 (214)
425 2r2a_A Uncharacterized protein 95.0 0.024 8.3E-07 54.8 5.4 39 661-699 7-51 (199)
426 1odf_A YGR205W, hypothetical 3 94.9 0.03 1E-06 57.5 6.4 23 661-683 33-55 (290)
427 2vli_A Antibiotic resistance p 94.9 0.0091 3.1E-07 56.5 2.3 25 311-335 5-29 (183)
428 2yhs_A FTSY, cell division pro 94.9 0.041 1.4E-06 60.3 7.7 38 660-698 294-331 (503)
429 2px0_A Flagellar biosynthesis 94.9 0.051 1.7E-06 56.0 8.0 37 660-696 106-143 (296)
430 1ltq_A Polynucleotide kinase; 94.9 0.011 3.7E-07 61.1 2.9 23 661-683 4-26 (301)
431 3c8u_A Fructokinase; YP_612366 94.9 0.014 4.7E-07 56.8 3.5 39 298-336 7-47 (208)
432 3cr8_A Sulfate adenylyltranfer 94.9 0.05 1.7E-06 61.0 8.4 59 278-336 333-394 (552)
433 2eyu_A Twitching motility prot 94.9 0.017 5.9E-07 58.4 4.3 24 660-683 26-49 (261)
434 2px0_A Flagellar biosynthesis 94.9 0.051 1.8E-06 56.0 7.9 27 310-336 104-130 (296)
435 1kgd_A CASK, peripheral plasma 94.9 0.013 4.4E-07 55.6 3.1 25 311-335 5-29 (180)
436 1sq5_A Pantothenate kinase; P- 94.8 0.027 9.3E-07 58.4 5.8 23 661-683 82-104 (308)
437 2pbr_A DTMP kinase, thymidylat 94.8 0.022 7.4E-07 54.2 4.7 24 314-337 3-26 (195)
438 2j37_W Signal recognition part 94.8 0.069 2.3E-06 59.1 9.3 26 312-337 102-127 (504)
439 1p9r_A General secretion pathw 94.8 0.042 1.4E-06 59.5 7.4 38 298-336 155-192 (418)
440 2xb4_A Adenylate kinase; ATP-b 94.8 0.016 5.4E-07 57.1 3.7 23 313-335 2-24 (223)
441 4eaq_A DTMP kinase, thymidylat 94.8 0.024 8.3E-07 56.1 5.1 33 661-694 28-60 (229)
442 3sr0_A Adenylate kinase; phosp 94.8 0.02 6.9E-07 55.7 4.3 23 313-335 2-24 (206)
443 3asz_A Uridine kinase; cytidin 94.8 0.017 6E-07 56.0 3.9 23 661-683 8-30 (211)
444 1z6g_A Guanylate kinase; struc 94.8 0.014 4.9E-07 57.3 3.3 23 661-683 25-47 (218)
445 2gxq_A Heat resistant RNA depe 94.8 0.39 1.3E-05 45.8 13.7 25 311-335 38-63 (207)
446 3umf_A Adenylate kinase; rossm 94.8 0.015 5.3E-07 57.0 3.4 24 312-335 30-53 (217)
447 1ex7_A Guanylate kinase; subst 94.8 0.017 5.9E-07 55.1 3.7 22 662-683 4-25 (186)
448 1lvg_A Guanylate kinase, GMP k 94.7 0.016 5.5E-07 55.9 3.5 25 311-335 4-28 (198)
449 2pez_A Bifunctional 3'-phospho 94.7 0.023 7.9E-07 53.6 4.5 37 311-354 5-41 (179)
450 3b9q_A Chloroplast SRP recepto 94.7 0.032 1.1E-06 57.7 5.9 40 660-700 101-140 (302)
451 2i3b_A HCR-ntpase, human cance 94.7 0.017 6E-07 55.3 3.6 24 661-684 3-26 (189)
452 3e70_C DPA, signal recognition 94.7 0.048 1.6E-06 57.0 7.2 38 660-698 130-167 (328)
453 2jaq_A Deoxyguanosine kinase; 94.7 0.02 6.8E-07 55.0 4.1 23 313-335 2-24 (205)
454 1rj9_A FTSY, signal recognitio 94.7 0.033 1.1E-06 57.6 5.9 39 660-699 103-141 (304)
455 2plr_A DTMP kinase, probable t 94.6 0.016 5.4E-07 56.1 3.2 25 312-336 5-29 (213)
456 2if2_A Dephospho-COA kinase; a 94.6 0.015 5.2E-07 56.1 3.1 22 313-335 3-24 (204)
457 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.028 9.5E-07 59.0 5.2 35 661-696 173-207 (330)
458 3fe2_A Probable ATP-dependent 94.6 0.47 1.6E-05 46.8 14.2 19 311-329 66-84 (242)
459 2j9r_A Thymidine kinase; TK1, 94.6 0.057 2E-06 52.5 7.0 24 314-337 31-54 (214)
460 4a1f_A DNAB helicase, replicat 94.6 0.062 2.1E-06 56.3 7.6 105 314-430 49-203 (338)
461 1vma_A Cell division protein F 94.5 0.038 1.3E-06 57.2 5.9 36 660-695 105-140 (306)
462 3tau_A Guanylate kinase, GMP k 94.5 0.017 5.7E-07 56.2 3.0 26 310-335 7-32 (208)
463 1sky_E F1-ATPase, F1-ATP synth 94.5 0.03 1E-06 61.1 5.2 28 309-336 149-176 (473)
464 1cke_A CK, MSSA, protein (cyti 94.5 0.021 7.1E-07 56.1 3.7 24 312-335 6-29 (227)
465 2wwf_A Thymidilate kinase, put 94.5 0.018 6.1E-07 55.9 3.1 27 311-337 10-36 (212)
466 1nn5_A Similar to deoxythymidy 94.5 0.018 6.3E-07 55.8 3.2 27 311-337 9-35 (215)
467 2gza_A Type IV secretion syste 94.5 0.028 9.4E-07 59.8 4.8 35 661-696 177-211 (361)
468 1nlf_A Regulatory protein REPA 94.5 0.03 1E-06 57.0 5.0 24 661-684 32-55 (279)
469 3kta_A Chromosome segregation 94.5 0.019 6.6E-07 54.2 3.3 27 661-687 28-54 (182)
470 3ney_A 55 kDa erythrocyte memb 94.5 0.019 6.6E-07 55.3 3.2 27 309-335 17-43 (197)
471 2grj_A Dephospho-COA kinase; T 94.4 0.024 8.3E-07 54.4 3.8 24 312-335 13-36 (192)
472 3jvv_A Twitching mobility prot 94.3 0.026 9E-07 59.7 4.3 25 660-684 124-148 (356)
473 3a00_A Guanylate kinase, GMP k 94.3 0.021 7E-07 54.4 3.1 24 313-336 3-26 (186)
474 3dm5_A SRP54, signal recogniti 94.3 0.055 1.9E-06 58.7 6.8 39 660-698 101-139 (443)
475 3gmt_A Adenylate kinase; ssgci 94.3 0.024 8.1E-07 56.0 3.5 35 661-700 10-44 (230)
476 2onk_A Molybdate/tungstate ABC 94.3 0.018 6.2E-07 57.5 2.7 37 661-698 26-62 (240)
477 2bbw_A Adenylate kinase 4, AK4 94.3 0.021 7.3E-07 57.0 3.3 25 311-335 27-51 (246)
478 3bgw_A DNAB-like replicative h 94.3 0.083 2.8E-06 57.7 8.2 28 310-337 196-223 (444)
479 3tr0_A Guanylate kinase, GMP k 94.3 0.022 7.6E-07 54.8 3.2 25 311-335 7-31 (205)
480 2axn_A 6-phosphofructo-2-kinas 94.2 0.25 8.5E-06 55.1 12.1 136 314-478 38-199 (520)
481 2bdt_A BH3686; alpha-beta prot 94.2 0.02 7E-07 54.5 2.9 22 313-334 4-25 (189)
482 1xp8_A RECA protein, recombina 94.2 0.037 1.3E-06 58.8 5.0 41 661-701 76-116 (366)
483 2og2_A Putative signal recogni 94.2 0.043 1.5E-06 58.1 5.5 40 660-700 158-197 (359)
484 2z43_A DNA repair and recombin 94.2 0.055 1.9E-06 56.5 6.3 38 661-698 109-152 (324)
485 2v54_A DTMP kinase, thymidylat 94.2 0.018 6.2E-07 55.4 2.4 25 311-335 4-28 (204)
486 2j41_A Guanylate kinase; GMP, 94.2 0.022 7.7E-07 54.8 3.1 26 310-335 5-30 (207)
487 2z0h_A DTMP kinase, thymidylat 94.1 0.024 8.3E-07 54.1 3.2 24 314-337 3-26 (197)
488 2a9k_A RAS-related protein RAL 94.1 0.25 8.7E-06 45.9 10.4 24 311-334 18-41 (187)
489 3r20_A Cytidylate kinase; stru 94.1 0.028 9.5E-07 55.7 3.7 25 311-335 9-33 (233)
490 1s96_A Guanylate kinase, GMP k 94.1 0.025 8.5E-07 55.6 3.3 23 661-683 18-40 (219)
491 3ly5_A ATP-dependent RNA helic 94.1 0.65 2.2E-05 46.5 14.0 19 312-330 92-110 (262)
492 2v9p_A Replication protein E1; 94.1 0.031 1.1E-06 57.7 4.1 23 661-683 128-150 (305)
493 1p9r_A General secretion pathw 94.1 0.048 1.6E-06 59.0 5.7 34 660-693 168-201 (418)
494 2jeo_A Uridine-cytidine kinase 94.0 0.02 6.9E-07 57.2 2.5 23 661-683 27-49 (245)
495 3lnc_A Guanylate kinase, GMP k 94.0 0.017 5.8E-07 57.1 1.9 23 661-683 29-52 (231)
496 3ake_A Cytidylate kinase; CMP 94.0 0.03 1E-06 54.0 3.5 23 313-335 4-26 (208)
497 1v5w_A DMC1, meiotic recombina 94.0 0.073 2.5E-06 56.1 6.8 40 661-700 124-169 (343)
498 2ewv_A Twitching motility prot 94.0 0.033 1.1E-06 59.4 4.2 25 660-684 137-161 (372)
499 3zvl_A Bifunctional polynucleo 94.0 0.041 1.4E-06 59.6 5.0 26 310-335 257-282 (416)
500 2wsm_A Hydrogenase expression/ 94.0 0.03 1E-06 54.6 3.5 41 295-335 14-54 (221)
No 1
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=2.8e-73 Score=676.24 Aligned_cols=542 Identities=39% Similarity=0.632 Sum_probs=471.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCCchhhccCCCC
Q 004878 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHS-TNNQDTDDAAAQGKPF 163 (725)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~~~~l~~~gv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 163 (725)
||++++++|..|+.+|++++|++|+|||||+|||.+++..++|+.+|+|++.+++++...+++ .+. ..
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~-----------~~ 70 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPV-----------LP 70 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCB-----------CC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHhccCCC-----------CC
Confidence 999999999999999999999999999999999987655889999999999999999999987 432 11
Q ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhhhccC
Q 004878 164 S--SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEG 241 (725)
Q Consensus 164 ~--~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~ 241 (725)
+ ....++||+.++++|+.|+.+|+.+|+.||+++|||+||++++++.+.++|+.+|++.+++.+.+.+.........
T Consensus 71 ~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~~~~~- 149 (758)
T 1r6b_X 71 ASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQ- 149 (758)
T ss_dssp CSSSCCCCEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC---------
T ss_pred CccccCCCCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHhhccccccc-
Confidence 1 1246899999999999999999999999999999999999988888999999999999998876644321110000
Q ss_pred CCCccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCC
Q 004878 242 REPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321 (725)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G 321 (725)
.. . . +. ..+ ++ +.....+.|++|+.+|+++++++.|+++||++++++++.+++.++.++|+||+||||
T Consensus 150 ~~-~-~-~~-~~~--~~------~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~G 217 (758)
T 1r6b_X 150 SS-D-P-GS-QPN--SE------EQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESG 217 (758)
T ss_dssp -------------------------------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTT
T ss_pred cc-c-c-cc-ccc--cc------ccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCC
Confidence 00 0 0 00 000 00 001134689999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCC
Q 004878 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVG 401 (725)
Q Consensus 322 ~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~ 401 (725)
||||++|+++++.+..+.+|..+.+..++.+++..+..+..+.|+++.+++.+++.+...++.||||||+|.+++.+...
T Consensus 218 tGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~ 297 (758)
T 1r6b_X 218 VGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS 297 (758)
T ss_dssp SSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS
T ss_pred CCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC
Confidence 99999999999999998999888899999999999988888999999999999999988778999999999998776541
Q ss_pred CCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCC
Q 004878 402 RGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (725)
Q Consensus 402 ~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i 481 (725)
.+..++.+.|+++++++.+.+|++|+.++|.+.+.++++|.+||+.|.|++|+.+++.+||+.+...+..++++.+
T Consensus 298 ----~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~ 373 (758)
T 1r6b_X 298 ----GGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRY 373 (758)
T ss_dssp ----SCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ----cchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2467889999999999999999999999998888999999999999999999999999999999999888899999
Q ss_pred CHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhccccc
Q 004878 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561 (725)
Q Consensus 482 ~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 561 (725)
+++++..++.++.+|+.++++|+++++++++++...++....
T Consensus 374 ~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~-------------------------------------- 415 (758)
T 1r6b_X 374 TAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVS-------------------------------------- 415 (758)
T ss_dssp CHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSC--------------------------------------
T ss_pred CHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhccccc--------------------------------------
Confidence 999999999999999999999999999999998766442100
Q ss_pred chhhhccCCcchHHHhccCCCCCCCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHH
Q 004878 562 DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAI 641 (725)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i 641 (725)
.....|+.++|..+++.|+++|+.++.+++...+..+++.|.+.|+||+++++.|
T Consensus 416 -------------------------~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l 470 (758)
T 1r6b_X 416 -------------------------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEAL 470 (758)
T ss_dssp -------------------------CCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHH
T ss_pred -------------------------ccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 0124689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCcccccccc
Q 004878 642 SRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEY 720 (725)
Q Consensus 642 ~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~ 720 (725)
..++...+.|+.+|++|.+++||+||||||||++|++||+.+ +.+|+++||+||+++|++++|+|+|||||||++.
T Consensus 471 ~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~ 546 (758)
T 1r6b_X 471 TEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG 546 (758)
T ss_dssp HHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT
T ss_pred HHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCCCcCcccc
Confidence 999999999999999999999999999999999999999998 5789999999999999999999999999999875
No 2
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=1.4e-72 Score=675.88 Aligned_cols=589 Identities=42% Similarity=0.621 Sum_probs=450.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhh
Q 004878 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (725)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
|||++||++++++|..|+.+|++++|++|+|||||+|||.++++ .++|..+|+|++.++.++...+++.+.
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~------- 73 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPK------- 73 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCC-------
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCC-------
Confidence 57899999999999999999999999999999999999999887 789999999999999999999988654
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhh
Q 004878 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (725)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~ 237 (725)
..+....++||+.++++|+.|+.+|+.+|+.||+++|||+||++++++ + ++..+++..+.....+.
T Consensus 74 ----~~~~~~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~-~--------~~~~~~~~~~~~~~~~~- 139 (854)
T 1qvr_A 74 ----VEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPG-L--------PGLEALKGALKELRGGR- 139 (854)
T ss_dssp ----CCGGGTTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTT-S--------CCHHHHHHHHTSSCSCC-
T ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccc-c--------CCHHHHHHHHHHhcccc-
Confidence 122334688999999999999999999999999999999999987654 2 88888877553221000
Q ss_pred hccCCCCccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEE
Q 004878 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (725)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~ 317 (725)
.. .+. .+ ....+.|++|+.+|+++++++.|+++||++++++++.+++.++.++|++|+
T Consensus 140 ------~~-------~~~--------~~-~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~ 197 (854)
T 1qvr_A 140 ------TV-------QTE--------HA-ESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLI 197 (854)
T ss_dssp ------SS-------CSS--------CC-CCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEE
T ss_pred ------cc-------ccc--------cc-cccchhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 00 000 00 113468999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEccchhhhh
Q 004878 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIG 396 (725)
Q Consensus 318 Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~ 396 (725)
||||||||++++++++.+..+.+|..+.+.+++.+++..+..|..+.|+++.+++.++..+... ++.||||||+|.+.+
T Consensus 198 G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 198 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc
Confidence 9999999999999999999889998888999999999999988889999999999999999865 689999999999987
Q ss_pred CCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhc
Q 004878 397 SGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH 476 (725)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~ 476 (725)
.+.. .+..++.+.|+++++++.+.+|++||..+|.+ +.++++|.+||+.|.|++|+.+++..||+.++.++..+
T Consensus 278 ~~~~-----~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~ 351 (854)
T 1qvr_A 278 AGKA-----EGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVH 351 (854)
T ss_dssp -------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCc-----cchHHHHHHHHHHHhCCCeEEEEecCchHHhh-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhh
Confidence 6544 34567889999999999999999999999877 78899999999999999999999999999999999888
Q ss_pred cCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhh------------hhhcCCCC-------
Q 004878 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQ------------TCILSKPP------- 537 (725)
Q Consensus 477 ~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~------------~~~l~~~~------- 537 (725)
+++.++++++..++.++.+|+.++++|++++++++++++..++.....|.+++ ...+.++.
T Consensus 352 ~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (854)
T 1qvr_A 352 HGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQER 431 (854)
T ss_dssp TTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSC
T ss_pred cCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 99999999999999999999999999999999999999999887665554321 11222222
Q ss_pred -hhHHHHHHHHHHhH-------------------------------HHHHhcccccchhhhccC-----CcchHHHhccC
Q 004878 538 -DDYWQEIRTVQAMH-------------------------------EVVQGSRLKYDDVVASMG-----DTSEIVVESSL 580 (725)
Q Consensus 538 -~~~~~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 580 (725)
..+..++..++... +......+++.+..+... +..+......
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 510 (854)
T 1qvr_A 432 LKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK- 510 (854)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh-
Confidence 11111111111111 011111122222111111 0111111111
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 004878 581 PSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660 (725)
Q Consensus 581 ~~~~~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~ 660 (725)
..........++.+++..+++.|+|+|+.++..++...+..+++.+.+.|+||++++..+...+.+.+.|+.+|++|++
T Consensus 511 -~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~ 589 (854)
T 1qvr_A 511 -LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIG 589 (854)
T ss_dssp -SSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSE
T ss_pred -hcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCce
Confidence 1122344567999999999999999999988777888888999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGE 719 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e 719 (725)
++||+||||||||++|++||+.+|+++.+|+++||++|.+++.+++|+|+|||||||++
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~ 648 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE 648 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc
Confidence 99999999999999999999999998899999999999999999999999999999987
No 3
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=9.5e-73 Score=670.51 Aligned_cols=562 Identities=45% Similarity=0.716 Sum_probs=454.1
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhh
Q 004878 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (725)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
|||++||++|+++|..|+++|++++|++|+|||||+|||.++++ .++|..+|+|++.++.++...+++.+.
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~------- 73 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQE------- 73 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCT-------
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCC-------
Confidence 58999999999999999999999999999999999999998876 789999999999999999988876543
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhh
Q 004878 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (725)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~ 237 (725)
. ...++||+.++++|+.|+.+|+++|+.||+++|||+||++++++.++++|+++|++.+.+++.+.....+..
T Consensus 74 ----~---~~~~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~~ 146 (758)
T 3pxi_A 74 ----M---SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNE 146 (758)
T ss_dssp ----T---CSSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCC
T ss_pred ----C---CCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCCc
Confidence 1 235889999999999999999999999999999999999999999999999999999999988766543220
Q ss_pred hccCCCCccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEE
Q 004878 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (725)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~ 317 (725)
.. . .. .+ .......+.|++|+.+|+++++++.++++||++++++++.+++.++.++|+||+
T Consensus 147 ~~-------~-~~-----~~------~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~ 207 (758)
T 3pxi_A 147 TG-------S-SA-----AG------TNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 207 (758)
T ss_dssp TT-------C-----------------CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE
T ss_pred cc-------c-cc-----cc------cccchhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEE
Confidence 00 0 00 00 011125688999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhC
Q 004878 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397 (725)
Q Consensus 318 Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~ 397 (725)
||||||||++|+++|+.+..+++|..+.+..++.+|+ +..+.|+++.+++.++..+...+++|||||
T Consensus 208 G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-------- 274 (758)
T 3pxi_A 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQAGNIILFID-------- 274 (758)
T ss_dssp SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC--------
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----cccccchHHHHHHHHHHHHHhcCCEEEEEc--------
Confidence 9999999999999999999999999999999999988 567889999999999999998889999999
Q ss_pred CCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhcc
Q 004878 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (725)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~ 477 (725)
+ ..+.++.|++.++++.+++|++||..+|++++.++++|.+||+.|.|++|+.+++..||+.+..+++.++
T Consensus 275 ~---------~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~ 345 (758)
T 3pxi_A 275 A---------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH 345 (758)
T ss_dssp C-----------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred C---------chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 2357889999999999999999999999999999999999999999999999999999999998888889
Q ss_pred CCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhc
Q 004878 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557 (725)
Q Consensus 478 ~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 557 (725)
++.++++++..++.++.+|+.++++|++++++++++++++.+.....+.+ ..++...+..+....+.....
T Consensus 346 ~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~---------~~~l~~~~~~~~~~~~~~~~~ 416 (758)
T 3pxi_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN---------LKELEQKLDEVRKEKDAAVQS 416 (758)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CC---------THHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcc---------hhhHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988876554432 234445555555554444444
Q ss_pred ccccchhhhccCCcchHHH---hccCCCCCCCCCCCccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCc
Q 004878 558 RLKYDDVVASMGDTSEIVV---ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQ 634 (725)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq 634 (725)
.+++....+......+... ....+..........+++++|..+++.|+|+|+.++..++...+..+++.|.+.|+||
T Consensus 417 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq 496 (758)
T 3pxi_A 417 QEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQ 496 (758)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcCh
Confidence 4444433332211111100 0000000011234678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHh
Q 004878 635 DEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVS 705 (725)
Q Consensus 635 ~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs 705 (725)
+++++.+...+.+.+.|+..|.+|++++||+||||||||++|++||+.+|+++.+|+++||++|++++.++
T Consensus 497 ~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 497 DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987665
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=4.8e-59 Score=521.53 Aligned_cols=463 Identities=42% Similarity=0.660 Sum_probs=375.5
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhh
Q 004878 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (725)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
|||++||++++++|..|+++|++++|++|+|||||+|||.++++ .++|..+|+|++.++.++...+++.+.
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~------- 73 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQE------- 73 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCT-------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCC-------
Confidence 58999999999999999999999999999999999999999877 789999999999999999988776542
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhhhhh
Q 004878 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (725)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~~~~ 237 (725)
....++||+.++++|+.|+.+|+++|+.||+++|||+||++++++.+.++|..+|++.+.++..+.....+..
T Consensus 74 -------~~~~~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~ 146 (468)
T 3pxg_A 74 -------MSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNE 146 (468)
T ss_dssp -------TCSSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCC
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccCc
Confidence 1234889999999999999999999999999999999999999999999999999999999988765542210
Q ss_pred hccCCCCccccccccccccccccccCCCCCChhhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEE
Q 004878 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (725)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~ 317 (725)
. .. .. .+ .......+.|.+|+.+|+++++++.++++||++++++++.+++.++.++|+||+
T Consensus 147 ~-----~~--~~---~~---------~~~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~ 207 (468)
T 3pxg_A 147 T-----GS--SA---AG---------TNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 207 (468)
T ss_dssp T-----TC-------------------CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE
T ss_pred c-----cc--cc---cC---------cCCccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEE
Confidence 0 00 00 00 001125688999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhC
Q 004878 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397 (725)
Q Consensus 318 Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~ 397 (725)
||||||||++|+++++.+..+.+|..+.+.+++.+|+. ..+.|+++.+++.++..+...++.|||||
T Consensus 208 G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-------- 274 (468)
T 3pxg_A 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAGNIILFID-------- 274 (468)
T ss_dssp SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC--------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccccchHHHHHHHHHHHHHhcCCeEEEEe--------
Confidence 99999999999999999999999998899999999987 45678888889999999988888999999
Q ss_pred CCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhcc
Q 004878 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (725)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~ 477 (725)
+ ..++++.|++.++++.+++|++||..+|++++.++++|.+||+.|.|++|+.+++..||+.+..+|+.++
T Consensus 275 ~---------~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~ 345 (468)
T 3pxg_A 275 A---------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH 345 (468)
T ss_dssp C-----------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred C---------chhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 2357889999999999999999999999998999999999999999999999999999999999888889
Q ss_pred CCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhc
Q 004878 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557 (725)
Q Consensus 478 ~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 557 (725)
++.++++++..++.++.+|+.++++|++++++++++++++++.....+.+ ..++...+..+....+.....
T Consensus 346 ~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~---------i~~l~~~i~~l~~~~~~~~~~ 416 (468)
T 3pxg_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN---------LKELEQKLDEVRKEKDAAVQS 416 (468)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSS---------THHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchH---------HHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988876665543 345566677776666666777
Q ss_pred ccccchhhhccCCcchHHH---hccCCCCCCCCCCCccCHHHHHHHHHhhhC
Q 004878 558 RLKYDDVVASMGDTSEIVV---ESSLPSASDDDEPAVVGPDDIAAVASLWSG 606 (725)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~di~~v~~~~tg 606 (725)
.+|+....+......+... ....+..........|+.+||+.+++.|||
T Consensus 417 ~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (468)
T 3pxg_A 417 QEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTG 468 (468)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCCCTHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHhC
Confidence 7777766665433322211 111111111122468999999999999997
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.7e-36 Score=350.53 Aligned_cols=332 Identities=23% Similarity=0.279 Sum_probs=231.5
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-.|+++.|.++.++.|.+++.- ..+.++||+||||||||++|+++|.++ +.+++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEE
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEE
Confidence 3578899988888877775421 345789999999999999999999988 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh----cCCCeEEEEe
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIAS 429 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~a 429 (725)
+..+. .++.|+.+..++.+|+.++...|+||||||||.|++......+ +....+.+.|+..+ +++.++||++
T Consensus 271 ~~~l~--sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~--~~~~riv~~LL~~mdg~~~~~~V~VIaa 346 (806)
T 3cf2_A 271 GPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp HHHHH--SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC--TTHHHHHHHHHTHHHHCCGGGCEEEEEE
T ss_pred hHHhh--cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC--hHHHHHHHHHHHHHhcccccCCEEEEEe
Confidence 99988 4678999999999999999999999999999999876544322 33445556665555 3577999999
Q ss_pred ccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHhhhhcccCCCchh
Q 004878 430 TTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKF-TLEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i-~~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
||..+ .+|++|+| || ..|+|+.|+.++|.+||+.+.... .+ .+..+..++..+.+|.. .+
T Consensus 347 TN~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~------~~~~dvdl~~lA~~T~Gfsg-----aD 410 (806)
T 3cf2_A 347 TNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM------KLADDVDLEQVANETHGHVG-----AD 410 (806)
T ss_dssp CSSTT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS------EECTTCCHHHHHHHCCSCCH-----HH
T ss_pred cCChh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC------CCCcccCHHHHHHhcCCCCH-----HH
Confidence 99987 89999999 99 489999999999999998765422 22 22236778888877754 67
Q ss_pred HHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhcccccchhhhccCCcchHHHhccCCCCCC
Q 004878 506 AIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASD 585 (725)
Q Consensus 506 ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (725)
...++.+|+..+..+...... +...... . +.
T Consensus 411 L~~Lv~eA~~~A~~r~~~~i~------~~~~~~~---------------------------------~-e~--------- 441 (806)
T 3cf2_A 411 LAALCSEAALQAIRKKMDLID------LEDETID---------------------------------A-EV--------- 441 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHGG------GTCCCCS---------------------------------H-HH---------
T ss_pred HHHHHHHHHHHHHHhcccccc------ccccccc---------------------------------h-hh---------
Confidence 777888776654322111000 0000000 0 00
Q ss_pred CCCCCccCHHHHHHHHHhhhC-------CChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCC
Q 004878 586 DDEPAVVGPDDIAAVASLWSG-------IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658 (725)
Q Consensus 586 ~~~~~~v~~~di~~v~~~~tg-------ip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp 658 (725)
.....|+.+|+..++..... +...+++|++.+.+.+.++.|.+.|.+. +..+-.+.+.|+..|
T Consensus 442 -~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p------~~~p~~f~~~g~~~~--- 511 (806)
T 3cf2_A 442 -MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP------VEHPDKFLKFGMTPS--- 511 (806)
T ss_dssp -HHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTT------TTCSGGGSSSCCCCC---
T ss_pred -hccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhh------hhCHHHHHhcCCCCC---
Confidence 00123444555554433211 1223556655444444444444443322 011112234455544
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 659 TAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 659 ~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
.++|||||||||||++|+|||+++ +.+|+.+++|++++| |||.+|++||
T Consensus 512 -~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~l~s~------------~vGese~~vr 560 (806)
T 3cf2_A 512 -KGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM------------WFGESEANVR 560 (806)
T ss_dssp -SCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHHHHHTT------------TCSSCHHHHH
T ss_pred -ceEEEecCCCCCchHHHHHHHHHh---CCceEEeccchhhcc------------ccchHHHHHH
Confidence 499999999999999999999998 789999999999998 9999999887
No 6
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=1.2e-26 Score=274.82 Aligned_cols=331 Identities=24% Similarity=0.286 Sum_probs=214.9
Q ss_pred hhcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEE
Q 004878 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (725)
Q Consensus 285 ~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ 351 (725)
..-.|++++|.++++++|.+++.. ..+.+++|+||||||||+++++++..+ +..++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~ 268 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFL 268 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEE
Confidence 345788999999999998887753 456789999999999999999999877 667889
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEE
Q 004878 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCI 427 (725)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI 427 (725)
+++..+. ..+.++.+..++.+|+.+....++++||||++.+++......+ +....+.+.|..++. +..+.+|
T Consensus 269 v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~--~~~~~~~~~Ll~ll~g~~~~~~v~vI 344 (806)
T 1ypw_A 269 INGPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp EEHHHHS--SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCS--HHHHHHHHHHHHHHHSSCTTSCCEEE
T ss_pred EEchHhh--hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccc--hHHHHHHHHHHHHhhhhcccccEEEe
Confidence 9988876 3567888999999999998888999999999999875433111 112334555555554 4678999
Q ss_pred EeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCch
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
++||..+ .+++++.+ || ..+.+..|+.+++.+||+.+..++... .+..+..++..+.+|.. .
T Consensus 345 ~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~g-----~ 409 (806)
T 1ypw_A 345 AATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGHVG-----A 409 (806)
T ss_dssp EECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-----TTCCTHHHHHSCSSCCH-----H
T ss_pred cccCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-----ccchhHHHHHhhcCcch-----H
Confidence 9999886 78899988 89 478999999999999998766533211 11224455555554432 3
Q ss_pred hHHHHHHHHHHHHHHhhhhchhhhhhhhcCCCChhHHHHHHHHHHhHHHHHhcccccchhhhccCCcchHHHhccCCCCC
Q 004878 505 KAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSAS 584 (725)
Q Consensus 505 ~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (725)
+...++.++...+......... ..+ ..+. . ..
T Consensus 410 dl~~l~~ea~~~a~r~~~~~i~----------~~~--~~~~---~-------------------------~~-------- 441 (806)
T 1ypw_A 410 DLAALCSEAALQAIRKKMDLID----------LED--ETID---A-------------------------EV-------- 441 (806)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTS----------CHH--HHCC---H-------------------------HH--------
T ss_pred HHHHHHHHHHHHHHhhhccccc----------hhh--hccc---h-------------------------hh--------
Confidence 4444444443322111000000 000 0000 0 00
Q ss_pred CCCCCCccCHHHHHHHHHhhhC-------CChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHh----hcCCC
Q 004878 585 DDDEPAVVGPDDIAAVASLWSG-------IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRS----RVGLK 653 (725)
Q Consensus 585 ~~~~~~~v~~~di~~v~~~~tg-------ip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~----~~gl~ 653 (725)
.....++.+++...+..... +....+. ...++|++++++.+...+.+. ..+.+
T Consensus 442 --~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~--------------~~di~gl~~vk~~l~~~v~~~~~~~~~~~~ 505 (806)
T 1ypw_A 442 --MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVT--------------WEDIGGLEDVKRELQELVQYPVEHPDKFLK 505 (806)
T ss_dssp --HTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCS--------------SCSSSCCCCHHHHHHTTTTSSSSSCTTTTC
T ss_pred --hhhhhhhhhhhhccccccCchhhhhhcccCcccc--------------ccccccchhhhhhHHHHHHhhhhchHHHHh
Confidence 00112333344333332211 1111222 234677777777776655432 11112
Q ss_pred CCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccccccc
Q 004878 654 DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 654 ~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~~~ 723 (725)
...+|..++|||||||||||++|++||+++ +.++++++++++.++ |+|..++.+|
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~------------~~g~~~~~i~ 560 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM------------WFGESEANVR 560 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTTC------------CTTTSSHHHH
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhhhh------------hcCccHHHHH
Confidence 222333589999999999999999999998 678999999999876 7777776654
No 7
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.92 E-value=8.9e-25 Score=204.76 Aligned_cols=141 Identities=31% Similarity=0.559 Sum_probs=130.5
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhh
Q 004878 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (725)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
+||++||++++++|..|+++|++++|++|+|||||+|||.++++ .++|..+|+|++.++.++...+++.+.
T Consensus 2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~------- 74 (146)
T 3fh2_A 2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQ------- 74 (146)
T ss_dssp GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSC-------
T ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCC-------
Confidence 68999999999999999999999999999999999999998776 789999999999999999999987653
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
.....++||+.++++|+.|..+|+++|+.||+++|||+||++++++.+.++|+++|++.+.+++.+...+
T Consensus 75 ------~~~~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~ 144 (146)
T 3fh2_A 75 ------PTTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLL 144 (146)
T ss_dssp ------CCCSCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ------CCcCCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 2235689999999999999999999999999999999999998889999999999999999999887655
No 8
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.90 E-value=5.7e-24 Score=198.94 Aligned_cols=139 Identities=28% Similarity=0.439 Sum_probs=127.3
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhh
Q 004878 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (725)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
.+|++||++++++|..|+++|++++|++|+|||||+|||.++++ .++|..+|+|++.++..+...+++.+.
T Consensus 3 ~~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~------- 75 (145)
T 3fes_A 3 ANFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE------- 75 (145)
T ss_dssp -CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-------
T ss_pred CcccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-------
Confidence 35678999999999999999999999999999999999998876 789999999999999999999987642
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHh
Q 004878 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSR 232 (725)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~ 232 (725)
.+..++||+.++++|+.|..+|+++|+.||+++|||+||++++++.+.++|+++|++.+.+++.+...
T Consensus 76 -------~~~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~ 143 (145)
T 3fes_A 76 -------ISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDM 143 (145)
T ss_dssp -------CCSCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22468899999999999999999999999999999999999888889999999999999999887654
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-22 Score=216.22 Aligned_cols=202 Identities=23% Similarity=0.271 Sum_probs=158.9
Q ss_pred hcCCCcccccHHHHHHHHHHHh-------------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 286 EELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.-+|+++.|.++.++.|.+.+. .+.+.++|||||||||||++|+++|.++ +.+++.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v 213 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRV 213 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEE
Confidence 3478999999999998887542 2556899999999999999999999999 8899999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHH---HHHHhhhhc----CCCeE
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI---SNLLKPSLG----RGELQ 425 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~---~~~L~~~l~----~~~v~ 425 (725)
+++.+. .++.|+.+..++.+|..++...|+||||||+|.+++....+.+ ++.... .+.|+..+. ...++
T Consensus 214 ~~s~l~--sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 214 SGAELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSG--GGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EGGGGS--CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSS--GGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred EhHHhh--ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCC--CCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 999887 5688999999999999999999999999999999876544222 122222 333333332 46789
Q ss_pred EEEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCH-HHHHHHHHHhhhhcccCC
Q 004878 426 CIASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRY 501 (725)
Q Consensus 426 vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~-~~l~~l~~~s~~~i~~r~ 501 (725)
||+|||.++ .+||+|.| || ..|+|+.|+.++|.+||+.+..+. .+++ ..++.+++.+.+|.+
T Consensus 290 vIaATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~------~l~~dvdl~~lA~~t~G~SG--- 355 (405)
T 4b4t_J 290 IIMATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM------NLTRGINLRKVAEKMNGCSG--- 355 (405)
T ss_dssp EEEEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS------BCCSSCCHHHHHHHCCSCCH---
T ss_pred EEeccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC------CCCccCCHHHHHHHCCCCCH---
Confidence 999999987 89999999 99 589999999999999998776533 2222 236778888877654
Q ss_pred CchhHHHHHHHHHHHH
Q 004878 502 LPDKAIDLVDEAGSRA 517 (725)
Q Consensus 502 lp~~ai~ll~~a~~~~ 517 (725)
.+...++.+|+..+
T Consensus 356 --ADi~~l~~eA~~~A 369 (405)
T 4b4t_J 356 --ADVKGVCTEAGMYA 369 (405)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHH
Confidence 66677777776544
No 10
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.89 E-value=5.3e-23 Score=193.33 Aligned_cols=140 Identities=18% Similarity=0.236 Sum_probs=121.1
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhh
Q 004878 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (725)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
||+++||++++++|..|+++|++++|++|+|||||+|||.++++ .++|..+|+|++.++..+...+++.+.
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~------- 73 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQ------- 73 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCC-------
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCC-------
Confidence 57899999999999999999999999999999999999998876 789999999999999999999988754
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHH
Q 004878 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVS 231 (725)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~ 231 (725)
..+....++||+.++++|+.|+.+|+.+|+.||+++|||+||+ ++++.+.++|+.+|++.+.+++.+..
T Consensus 74 ----~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~~~~~~~~L~~~gi~~~~l~~~l~~ 142 (148)
T 1khy_A 74 ----VEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQ 142 (148)
T ss_dssp ----C-------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TSCHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred ----CCCCCCCcCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 1122245789999999999999999999999999999999999 55677899999999999999886643
No 11
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.89 E-value=4.6e-23 Score=194.22 Aligned_cols=140 Identities=32% Similarity=0.512 Sum_probs=124.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCchhh
Q 004878 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (725)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
||+++||++++++|..|+++|++++|++|+|||||+|||.++++ .++|+.+|+|++.++.++...+++.+.
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~------- 73 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQE------- 73 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC---------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCc-------
Confidence 57899999999999999999999999999999999999998886 789999999999999999999987653
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
.. ..++||+.++++|+.|+.+|+.+|+.||+++|||+||++++++.+.++|+.+|++.+.+++.+....
T Consensus 74 ----~~---~~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~ 142 (150)
T 2y1q_A 74 ----MS---QTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142 (150)
T ss_dssp ----------CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ----cc---ccCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 3578999999999999999999999999999999999998888788999999999999998775544
No 12
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-21 Score=211.64 Aligned_cols=202 Identities=22% Similarity=0.251 Sum_probs=157.3
Q ss_pred cCCCcccccHHHHHHHHHHHh-------------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-+|++|.|.++.++.|.+.+. .+.+.++|||||||||||++|+++|.++ +.+++.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEE
Confidence 478999999999999887532 1567899999999999999999999999 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHH---HHHhhhh----cCCCeEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS---NLLKPSL----GRGELQC 426 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~---~~L~~~l----~~~~v~v 426 (725)
+..+. .++.|+.+..++.+|..++...|+||||||+|.++..+..... +...... +.++..+ ..+.++|
T Consensus 276 ~s~L~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 276 GSELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA--GGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp GGGGC--CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSC--GGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred hHHhh--cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCC--CccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 99888 5688999999999999999999999999999999876543211 1122222 3333333 2467899
Q ss_pred EEeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCc
Q 004878 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp 503 (725)
|+|||.++ .+|++|.| ||. .|+|+.|+.++|.+||+.+........+ + .++.+++.+.+|..
T Consensus 352 IaATNrpd-----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~d--v---dl~~LA~~T~GfSG----- 416 (467)
T 4b4t_H 352 MFATNRPN-----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG--I---RWELISRLCPNSTG----- 416 (467)
T ss_dssp EEECSCTT-----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSS--C---CHHHHHHHCCSCCH-----
T ss_pred EeCCCCcc-----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCC--C---CHHHHHHHCCCCCH-----
Confidence 99999987 89999999 994 8999999999999999877663321111 2 25677888877653
Q ss_pred hhHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRA 517 (725)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (725)
.+...++.+|+..+
T Consensus 417 ADI~~l~~eAa~~A 430 (467)
T 4b4t_H 417 AELRSVCTEAGMFA 430 (467)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777776544
No 13
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.9e-22 Score=212.17 Aligned_cols=201 Identities=24% Similarity=0.300 Sum_probs=157.5
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-+|++|.|.++.++.|.+.+.. +.+.++|||||||||||++|+++|.++ +..++.++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~ 248 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIV 248 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEE
Confidence 4789999999999988876432 456789999999999999999999999 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHH---Hhhhh----cCCCeEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL---LKPSL----GRGELQC 426 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~---L~~~l----~~~~v~v 426 (725)
.+.+. .++.|+.+..++.+|..++...|+||||||+|.++.....+.. .+....... |+..+ ..+.++|
T Consensus 249 ~s~l~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~LL~~lDg~~~~~~ViV 324 (437)
T 4b4t_I 249 GSELI--QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS--GGEREIQRTMLELLNQLDGFDDRGDVKV 324 (437)
T ss_dssp SGGGC--CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSC--SSCCHHHHHHHHHHHHHHHCCCSSSEEE
T ss_pred HHHhh--hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCC--CccHHHHHHHHHHHHHhhCcCCCCCEEE
Confidence 99887 5688999999999999999999999999999999876543222 122233333 33333 2467999
Q ss_pred EEeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHhhhhcccCCC
Q 004878 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYL 502 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~-~l~~l~~~s~~~i~~r~l 502 (725)
|+|||.++ .+||+|.| ||+ .|+|+.|+.++|.+||+.+..+. .++++ .++.++..+.+|..
T Consensus 325 IaATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~------~l~~dvdl~~LA~~T~GfSG---- 389 (437)
T 4b4t_I 325 IMATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM------NLSEDVNLETLVTTKDDLSG---- 389 (437)
T ss_dssp EEEESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS------CBCSCCCHHHHHHHCCSCCH----
T ss_pred EEeCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC------CCCCcCCHHHHHHhCCCCCH----
Confidence 99999998 89999999 994 89999999999999998776533 22222 36778888877654
Q ss_pred chhHHHHHHHHHHHH
Q 004878 503 PDKAIDLVDEAGSRA 517 (725)
Q Consensus 503 p~~ai~ll~~a~~~~ 517 (725)
.+...++.+|+..+
T Consensus 390 -ADI~~l~~eA~~~A 403 (437)
T 4b4t_I 390 -ADIQAMCTEAGLLA 403 (437)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH
Confidence 66677777776544
No 14
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.88 E-value=2.9e-22 Score=195.51 Aligned_cols=192 Identities=56% Similarity=0.924 Sum_probs=162.1
Q ss_pred hhhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeE
Q 004878 270 ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (725)
Q Consensus 270 ~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l 349 (725)
.+.|++++.+|.+++++..+++++|++++++++.+.+......+++|+||+|||||++++.+++.+.....+....+..+
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 2 MQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp CHHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred chHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 36788999999999999999999999999999999998887889999999999999999999999977666666668899
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEE
Q 004878 350 MSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428 (725)
Q Consensus 350 ~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~ 428 (725)
+.+++..+..+....+.+...+..++..+.. .++.||||||+|.+.+.+.. ....++.+.|+.+++.+.+.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~i~ 156 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-----DGAMDAGNMLKPALARGELHCVG 156 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHHTTSCCEEE
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc-----cchHHHHHHHHHhhccCCeEEEE
Confidence 9999988876666677778888888887754 45789999999999754322 22345677888888899999999
Q ss_pred eccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHH
Q 004878 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL 466 (725)
+++..++.....+++++.+||..|.+++|+.+++.+||
T Consensus 157 ~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 99998877777889999999988999999999988775
No 15
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-21 Score=213.42 Aligned_cols=203 Identities=20% Similarity=0.260 Sum_probs=158.3
Q ss_pred hcCCCcccccHHHHHHHHHHHh-------------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 286 EELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.-+|++|.|.++.++.|.+.+. .+.+.++|||||||||||++|+++|.++ +.+++.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 3478999999999999887532 1456789999999999999999999999 8899999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHH---HHHHhhhhc----CCCeE
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI---SNLLKPSLG----RGELQ 425 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~---~~~L~~~l~----~~~v~ 425 (725)
+++.+. .++.|+.+..++.+|..++...|+||||||+|.+++....+.. .+.... .+.|+..+. ...++
T Consensus 247 ~~s~l~--~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~--~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 247 AAPQLV--QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK--SGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp EGGGGC--SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGG--GTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred ehhhhh--hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCC--CCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 999887 5688999999999999999999999999999999876543221 122233 233333332 46689
Q ss_pred EEEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCC
Q 004878 426 CIASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502 (725)
Q Consensus 426 vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~l 502 (725)
||+|||.++ .+||+|.| || ..|+|+.|+.++|.+||+.+...+....+ + .++.+++.+.+|.+
T Consensus 323 VIaaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d--v---dl~~lA~~t~G~sG---- 388 (434)
T 4b4t_M 323 VLAATNRVD-----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDD--I---NWQELARSTDEFNG---- 388 (434)
T ss_dssp EEEECSSCC-----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSC--C---CHHHHHHHCSSCCH----
T ss_pred EEEeCCCch-----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCc--C---CHHHHHHhCCCCCH----
Confidence 999999987 89999988 99 48999999999999999988775422222 2 25677888777653
Q ss_pred chhHHHHHHHHHHHH
Q 004878 503 PDKAIDLVDEAGSRA 517 (725)
Q Consensus 503 p~~ai~ll~~a~~~~ 517 (725)
.+...++.+|+..+
T Consensus 389 -ADi~~l~~eA~~~a 402 (434)
T 4b4t_M 389 -AQLKAVTVEAGMIA 402 (434)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH
Confidence 66677777776544
No 16
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3e-21 Score=210.28 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=156.8
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-+|++|.|.++.++.|.+.+.. +.+.++|||||||||||++|+++|.++ +.+++.++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 4689999999999888876432 456889999999999999999999999 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCC-cHHHHHHHhhhhc----CCCeEEEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT-GLDISNLLKPSLG----RGELQCIA 428 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~-~~~~~~~L~~~l~----~~~v~vI~ 428 (725)
++.+. .++.|+.+..++.+|..++...|+||||||+|.+++....+....+. .....+.|+..+. .+.++||+
T Consensus 248 ~s~l~--sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ 325 (437)
T 4b4t_L 248 ASGIV--DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325 (437)
T ss_dssp GGGTC--CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEE
T ss_pred hhhhc--cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEE
Confidence 99887 56889999999999999999999999999999998765432111111 1223334444443 45689999
Q ss_pred eccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchh
Q 004878 429 STTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
|||.++ .+||+|.| || ..|+|+.|+.++|.+||+.++...... .+..+..++..+.+|.+ .+
T Consensus 326 ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-----~d~dl~~lA~~t~G~sG-----AD 390 (437)
T 4b4t_L 326 ATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-----GEFDFEAAVKMSDGFNG-----AD 390 (437)
T ss_dssp EESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-----SCCCHHHHHHTCCSCCH-----HH
T ss_pred ecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHhCCCCCH-----HH
Confidence 999987 89999988 58 489999999999999998877643211 12236777887777653 66
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
...++.+|+..+
T Consensus 391 i~~l~~eA~~~a 402 (437)
T 4b4t_L 391 IRNCATEAGFFA 402 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667777776543
No 17
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.2e-21 Score=206.61 Aligned_cols=203 Identities=18% Similarity=0.212 Sum_probs=158.1
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-+|+++.|.++.++.|.+.+.. ..+.++|||||||||||++|+++|.++ +.+++.++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVN 238 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Confidence 4789999999999988886532 456789999999999999999999999 88999999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCC-cHHHHHHHhhhh----cCCCeEEEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT-GLDISNLLKPSL----GRGELQCIA 428 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~-~~~~~~~L~~~l----~~~~v~vI~ 428 (725)
++.+. .++.|+.+..++.+|..++...|+|+||||+|.++..........+. ...+.+.|+..+ ....++||+
T Consensus 239 ~~~l~--~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~ 316 (428)
T 4b4t_K 239 GSEFV--HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316 (428)
T ss_dssp GGGTC--CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEE
T ss_pred cchhh--ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 99887 46789999999999999999999999999999998765432221111 122333444333 356799999
Q ss_pred eccchhhhhhhcccHHHHc--ccc-eEEec-CCCHHHHHHHHHHHHHHHHhccCCCCCH-HHHHHHHHHhhhhcccCCCc
Q 004878 429 STTQDEHRTQFEKDKALAR--RFQ-PVLIS-EPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~--Rf~-~I~i~-~Ps~ee~~~IL~~~~~~~~~~~~~~i~~-~~l~~l~~~s~~~i~~r~lp 503 (725)
|||.++ .+||+|.| ||. .|+|+ .|+.++|..||+.+..+. .+.+ ..++.++..+.+|.+
T Consensus 317 aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~------~l~~~~dl~~lA~~t~G~sg----- 380 (428)
T 4b4t_K 317 ATNRAD-----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM------SLAPEADLDSLIIRNDSLSG----- 380 (428)
T ss_dssp EESCSS-----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS------CBCTTCCHHHHHHHTTTCCH-----
T ss_pred ecCChh-----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC------CCCcccCHHHHHHHCCCCCH-----
Confidence 999987 89999999 995 78996 799999999998877633 2222 236788888887754
Q ss_pred hhHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRA 517 (725)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (725)
.+...++.+|+..+
T Consensus 381 adi~~l~~eA~~~a 394 (428)
T 4b4t_K 381 AVIAAIMQEAGLRA 394 (428)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777776544
No 18
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.86 E-value=1.6e-21 Score=189.54 Aligned_cols=184 Identities=58% Similarity=0.928 Sum_probs=156.5
Q ss_pred hhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEE
Q 004878 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (725)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~ 350 (725)
+.|++|+.+|.+++++..+++++|++++++++.+.+......+++|+||+|||||++++.+++.+.....|....+..++
T Consensus 3 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 3 QALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred hHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 46788999999999999999999999999999999988888899999999999999999999999776677666688999
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEe
Q 004878 351 SLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429 (725)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~a 429 (725)
.+++..+..+....+.+...+..++..+... ++.+|||||+|.+.+.+... ....++.+.|+.+++++.+.+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~----~~~~~~~~~l~~~~~~~~~~ii~~ 158 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA----EGALDAGNILKPMLARGELRCIGA 158 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC----TTSCCTHHHHHHHHHTTCSCEEEE
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc----ccchHHHHHHHHHHhcCCeeEEEe
Confidence 9999888766666677777888888877665 67899999999997543311 223567888888899999999999
Q ss_pred ccchhhhhhhcccHHHHcccceEEecCCC
Q 004878 430 TTQDEHRTQFEKDKALARRFQPVLISEPS 458 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps 458 (725)
++..++.....+++++.+||..|.+++|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred cCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 99988776677899999999989999885
No 19
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.85 E-value=3e-21 Score=180.18 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHHhcC-CCCCCchhhccCCCC
Q 004878 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHST-NNQDTDDAAAQGKPF 163 (725)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 163 (725)
||++++++|..|+++|++++|++|+|||||+|||.+++..++|+.+|+|++.++..+...+++. +. ..
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~p~-----------~~ 70 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPV-----------LP 70 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCB-----------CC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-----------CC
Confidence 8999999999999999999999999999999999887668899999999999999999999875 43 11
Q ss_pred -C-CCCCCCCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHH
Q 004878 164 -S-SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAV 230 (725)
Q Consensus 164 -~-~~~~~~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~ 230 (725)
+ ....++||+.++++|+.|+.+|+.+|+.||+++|||+||++++++.+.++|+.+|++.+.+++.+.
T Consensus 71 ~~~~~~~~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 71 ASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp SSCSCCSCEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 1 124588999999999999999999999999999999999998887789999999999999988664
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.84 E-value=5.3e-20 Score=195.85 Aligned_cols=206 Identities=21% Similarity=0.280 Sum_probs=160.5
Q ss_pred hhhcCCCcccccHHHHHHHHHHHh------------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEE
Q 004878 284 ASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (725)
Q Consensus 284 ~~~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ 351 (725)
..+-.|++++|.++.++.|.+.+. .....++||+||||||||++|++++.++ +..++.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~ 81 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFS 81 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEE
Confidence 344568899999999999998772 1234679999999999999999999998 778999
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-----CCCeEE
Q 004878 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQC 426 (725)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~v~v 426 (725)
+++..+. ..+.|+.+..++.++..+....++||||||||.+.+....+. ......+.+.++..+. ...+++
T Consensus 82 v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 82 VSSSDLV--SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp EEHHHHH--TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred EchHHHh--hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc--chHHHHHHHHHHHHhccccccCCceEE
Confidence 9998876 356788899999999999988899999999999976543211 1233445555554443 467899
Q ss_pred EEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchh
Q 004878 427 IASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
|++||... .+++++.+|| ..+.++.|+.+++.+||+.++. .....+++..+..++..+.+|.. .+
T Consensus 158 i~atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~----~~~~~~~~~~l~~la~~t~g~sg-----~d 223 (322)
T 3eie_A 158 LGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----DTPCVLTKEDYRTLGAMTEGYSG-----SD 223 (322)
T ss_dssp EEEESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT----TCCCCCCHHHHHHHHHTTTTCCH-----HH
T ss_pred EEecCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc----cCCCCCCHHHHHHHHHHcCCCCH-----HH
Confidence 99999886 7899999999 4799999999999999988765 44567889999999998887653 56
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
...++.+|...+
T Consensus 224 i~~l~~~a~~~a 235 (322)
T 3eie_A 224 IAVVVKDALMQP 235 (322)
T ss_dssp HHHHHHHHTTHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.84 E-value=2.1e-19 Score=196.34 Aligned_cols=197 Identities=21% Similarity=0.322 Sum_probs=150.5
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccC
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL 345 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~ 345 (725)
..|.+.+.+..|++++|++..++.|.+++.. ....++||+||||||||++|++++.++
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---------- 172 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---------- 172 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------
Confidence 4566677788899999999999999987732 345789999999999999999999987
Q ss_pred CCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-----
Q 004878 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----- 420 (725)
Q Consensus 346 ~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----- 420 (725)
+..++.+++..+.. .+.|+.+..++.++..+....+.||||||||.++.....+.. .....+++.|+..+.
T Consensus 173 ~~~~~~v~~~~l~~--~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 173 NATFFNISAASLTS--KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEH--DASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp TCEEEEECSCCC---------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC--
T ss_pred cCcEEEeeHHHhhc--cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccc--hHHHHHHHHHHHHhhccccc
Confidence 77899999887763 456777788899999998888899999999999764432111 223445555555544
Q ss_pred -CCCeEEEEeccchhhhhhhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 421 -~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
...++||++||..+ .+++++.+||. .|.++.|+.+++..||+.++. ..+..++++.+..++..+.+|.
T Consensus 249 ~~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~----~~~~~l~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC----KQGSPLTQKELAQLARMTDGYS 318 (389)
T ss_dssp ---CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT----TSCCCSCHHHHHHHHHHTTTCC
T ss_pred CCCCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHcCCCC
Confidence 35689999999876 78999999995 799999999999999987776 4567889999999999888764
No 22
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.84 E-value=1.4e-20 Score=179.41 Aligned_cols=136 Identities=13% Similarity=0.071 Sum_probs=115.2
Q ss_pred CccchHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHHhcCCCCCCc
Q 004878 77 PISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTD 154 (725)
Q Consensus 77 ~~~~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLl~ll~~~~~--~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~ 154 (725)
...+||++||++++++|+.|+++|++++|++|+|||||+|||.++++ .++|+.+|+|++.+++++. .+++.+.
T Consensus 17 ~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~---- 91 (171)
T 3zri_A 17 ELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQ---- 91 (171)
T ss_dssp CHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCC----
T ss_pred hHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCC----
Confidence 44589999999999999999999999999999999999999999876 7899999999999999999 8887643
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHH-hcCCCccCHHHHHHHhhhcCCcchhHHHH----h-hcCCHHHHHHH
Q 004878 155 DAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSR-SRGYNFIAPEHIALGLFTVDDGSAGRVLK----R-LGVDVNHLAAV 228 (725)
Q Consensus 155 ~~~~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~-~~g~~~V~~~hlllall~~~~~~a~~iL~----~-~gv~~~~l~~~ 228 (725)
+....++||++++++|+.|+.+|+ ++|+.||+++|||+||++++ ..+.+. . ..++.+.+++.
T Consensus 92 ---------~~~~~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~---~~~~~~~~~~~l~~i~~~~L~~~ 159 (171)
T 3zri_A 92 ---------VLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRA---DRYLSFKLISLFEGINRENLKKH 159 (171)
T ss_dssp ---------CCSSCCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH---HHHSCHHHHHHTTTSCHHHHHHT
T ss_pred ---------CCCCCCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh---hhhHHHHhhHHHHcCCHHHHHHH
Confidence 223568999999999999999999 99999999999999999754 222222 1 24666666553
Q ss_pred H
Q 004878 229 A 229 (725)
Q Consensus 229 ~ 229 (725)
+
T Consensus 160 ~ 160 (171)
T 3zri_A 160 F 160 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=1.3e-19 Score=195.26 Aligned_cols=213 Identities=19% Similarity=0.245 Sum_probs=156.8
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCccc
Q 004878 277 CVDLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL 344 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l 344 (725)
...+.....+..|++++|+++.++.|.+.+.. ....++||+||||||||++|++++..+
T Consensus 38 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--------- 108 (355)
T 2qp9_X 38 SSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--------- 108 (355)
T ss_dssp ---------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---------
T ss_pred hhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---------
Confidence 34445556677899999999999999887631 335689999999999999999999998
Q ss_pred CCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----
Q 004878 345 LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---- 420 (725)
Q Consensus 345 ~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---- 420 (725)
+..++.+++..+.. .+.|+.+..++.++..+....++||||||+|.+.+....+. ......+.+.|+..+.
T Consensus 109 -~~~~~~v~~~~l~~--~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~--~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 109 -NSTFFSVSSSDLVS--KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp -TCEEEEEEHHHHHS--CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC-
T ss_pred -CCCEEEeeHHHHhh--hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc--chHHHHHHHHHHHHhhcccc
Confidence 67889999988763 45677788899999988888899999999999975432211 1222345555555553
Q ss_pred -CCCeEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcc
Q 004878 421 -RGELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (725)
Q Consensus 421 -~~~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~ 498 (725)
...++||++||.++ .+++++.+|| ..+.++.|+.+++..||+.++. ..+..+++..+..++..+.+|..
T Consensus 184 ~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----~~~~~~~~~~l~~la~~t~G~sg 254 (355)
T 2qp9_X 184 DSQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----DTPSVLTKEDYRTLGAMTEGYSG 254 (355)
T ss_dssp --CCEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----TSCBCCCHHHHHHHHHHTTTCCH
T ss_pred cCCCeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHcCCCCH
Confidence 45789999999886 7899999999 5899999999999999987765 34556789999999999887643
Q ss_pred cCCCchhHHHHHHHHHHHH
Q 004878 499 DRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 499 ~r~lp~~ai~ll~~a~~~~ 517 (725)
.++..++.+|+..+
T Consensus 255 -----~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 255 -----SDIAVVVKDALMQP 268 (355)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 56667777776654
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.83 E-value=6.5e-19 Score=190.05 Aligned_cols=216 Identities=22% Similarity=0.314 Sum_probs=165.9
Q ss_pred hhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhc
Q 004878 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (725)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~ 338 (725)
..++.....+..+..+..|++++|+++.++.|.+.+.. ....++||+||||||||++|++++..+
T Consensus 65 ~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--- 141 (357)
T 3d8b_A 65 KMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--- 141 (357)
T ss_dssp HHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---
T ss_pred HHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---
Confidence 33445555666667778899999999999999987642 456789999999999999999999987
Q ss_pred CCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 339 ~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
+..++.+++..+.. .+.|+.+..++.++..+....+.||||||||.+.+....+. ......+++.|+..
T Consensus 142 -------~~~~~~i~~~~l~~--~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~ 210 (357)
T 3d8b_A 142 -------GATFFSISASSLTS--KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE--HESSRRIKTEFLVQ 210 (357)
T ss_dssp -------TCEEEEEEGGGGCC--SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHH
T ss_pred -------CCeEEEEehHHhhc--cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc--chHHHHHHHHHHHH
Confidence 67889999988763 45677888889999988888899999999999976533211 12233445555555
Q ss_pred hc------CCCeEEEEeccchhhhhhhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004878 419 LG------RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (725)
Q Consensus 419 l~------~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~ 491 (725)
+. ...+++|++||... .+++++.+||. .+.++.|+.+++..|++.++. ..++.++++.++.++.
T Consensus 211 l~~~~~~~~~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~----~~~~~l~~~~l~~la~ 281 (357)
T 3d8b_A 211 LDGATTSSEDRILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMS----KEQCCLSEEEIEQIVQ 281 (357)
T ss_dssp HHC----CCCCEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH----TSCBCCCHHHHHHHHH
T ss_pred HhcccccCCCCEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh----hcCCCccHHHHHHHHH
Confidence 44 35689999999876 78999999995 789999999999999988776 3466789999999999
Q ss_pred HhhhhcccCCCchhHHHHHHHHH
Q 004878 492 LSARYISDRYLPDKAIDLVDEAG 514 (725)
Q Consensus 492 ~s~~~i~~r~lp~~ai~ll~~a~ 514 (725)
.+.+|.. .+...++..+.
T Consensus 282 ~t~G~s~-----~dl~~l~~~a~ 299 (357)
T 3d8b_A 282 QSDAFSG-----ADMTQLCREAS 299 (357)
T ss_dssp HTTTCCH-----HHHHHHHHHHH
T ss_pred HcCCCCH-----HHHHHHHHHHH
Confidence 8887653 44555555544
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.7e-19 Score=190.05 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=158.4
Q ss_pred hcCCCcccccHHHHHHHHHHHh------------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 286 EELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
.-+|++++|.++.++.|.+.+. .....++||+||||||||++|++++.++ .+..++.++
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i~ 78 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSIS 78 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEEE
Confidence 3468899999999999888763 1234679999999999999999999987 256778888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-----CCCeEEEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIA 428 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~v~vI~ 428 (725)
+..+. ..+.|+.+..++.++..+....++||||||+|.+.+...... ......+.+.|+..+. ...+++|+
T Consensus 79 ~~~l~--~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~v~vI~ 154 (322)
T 1xwi_A 79 SSDLV--SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGILVLG 154 (322)
T ss_dssp CCSSC--CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC--TTHHHHHHHHHHHHHHCSSSCCTTEEEEE
T ss_pred hHHHH--hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc--chHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 87766 345677888899999999888899999999999986543321 1222344455544443 46789999
Q ss_pred eccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHH
Q 004878 429 STTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai 507 (725)
+||.++ .+++++.+|| ..+.++.|+.+++..||+.++. ..+..+++..+..+++.+.+|.. .+..
T Consensus 155 atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----~~~~~l~~~~l~~la~~t~G~sg-----adl~ 220 (322)
T 1xwi_A 155 ATNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG----TTQNSLTEADFRELGRKTDGYSG-----ADIS 220 (322)
T ss_dssp EESCTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----TCCBCCCHHHHHHHHHTCTTCCH-----HHHH
T ss_pred ecCCcc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHcCCCCH-----HHHH
Confidence 999886 7899999999 5899999999999999987765 34556789999999998887753 5566
Q ss_pred HHHHHHHHHH
Q 004878 508 DLVDEAGSRA 517 (725)
Q Consensus 508 ~ll~~a~~~~ 517 (725)
.++.+|+..+
T Consensus 221 ~l~~~A~~~a 230 (322)
T 1xwi_A 221 IIVRDALMQP 230 (322)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 6777666543
No 26
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.82 E-value=4.5e-19 Score=210.09 Aligned_cols=179 Identities=17% Similarity=0.245 Sum_probs=130.2
Q ss_pred CcccccHHHHHHHHHHHhcCC---------CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc
Q 004878 290 DPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~~---------~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g 360 (725)
+.++|+++.++.+...+.+.. ..++||+||||||||++|+++++.+.. .+..++.+||+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~-------~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG-------DEESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS-------CTTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-------CCcceEEEechhcccc
Confidence 478999999999988876521 126999999999999999999999843 2667899999887643
Q ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------CeEEE
Q 004878 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (725)
Q Consensus 361 ~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI 427 (725)
.... -..+...+...++.|||||||+.+ ..++++.|+++++.+ ++++|
T Consensus 564 ~~~~------~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 624 (758)
T 3pxi_A 564 HSTS------GGQLTEKVRRKPYSVVLLDAIEKA-------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILI 624 (758)
T ss_dssp CCCC---------CHHHHHHCSSSEEEEECGGGS-------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEE
T ss_pred cccc------cchhhHHHHhCCCeEEEEeCcccc-------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEE
Confidence 2211 112223344566789999999988 557889999888753 35889
Q ss_pred Eeccchh-----hhh--hhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHh-----ccCCCCCHHHHHHHHHHhh
Q 004878 428 ASTTQDE-----HRT--QFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEA-----HHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 428 ~at~~~~-----~~~--~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~-----~~~~~i~~~~l~~l~~~s~ 494 (725)
+|||... +.. ...+.|.|.+|| ..|.|++|+.+++..|++..+.++.. ...+.++++++++++..+.
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 9988421 100 012679999999 68999999999999999987766532 2346789999999987543
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=4.7e-18 Score=177.39 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=150.8
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
..|++++|+++.++++.+.+.. ....++||+||||||||++|++++..+ +..++.++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v~ 83 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRVV 83 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 4678999999999999887644 466789999999999999999999987 67888888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-------CCCeEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQC 426 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~v 426 (725)
+..+. ..+.+.....+..++..+....+.||||||+|.+.+....... +...+.+..+..++. ...+++
T Consensus 84 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 84 GSELV--KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT--GGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp GGGGC--CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCC--GGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred hHHHH--HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccC--CccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 88776 3456778888999999998888999999999999865432111 123334444444332 357899
Q ss_pred EEeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCc
Q 004878 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp 503 (725)
|++||..+ .+++++.+ ||. .+.++.|+.+++.+|++...... .+. .+..+..++..+.++. +
T Consensus 160 I~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~l~~~~~g~~-----~ 224 (285)
T 3h4m_A 160 IGATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM----NLA-EDVNLEEIAKMTEGCV-----G 224 (285)
T ss_dssp EEECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS----CBC-TTCCHHHHHHHCTTCC-----H
T ss_pred EEeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC----CCC-CcCCHHHHHHHcCCCC-----H
Confidence 99999886 78999999 994 89999999999999998766532 221 2223566777766553 3
Q ss_pred hhHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRA 517 (725)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (725)
.+...++..|...+
T Consensus 225 ~~i~~l~~~a~~~a 238 (285)
T 3h4m_A 225 AELKAICTEAGMNA 238 (285)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666665544
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.80 E-value=2.8e-18 Score=180.30 Aligned_cols=209 Identities=20% Similarity=0.313 Sum_probs=157.3
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCC
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS 346 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~ 346 (725)
.+.....+..|++++|+++.++.+.+.+.. ....++||+||||||||++|++++..+ +
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----------~ 79 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----------S 79 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT----------T
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh----------C
Confidence 444555667899999999999999887633 245789999999999999999999987 6
Q ss_pred CeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC-----
Q 004878 347 KRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----- 421 (725)
Q Consensus 347 ~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~----- 421 (725)
..++.+++..+.. .+.++.+..++.++..+....+.||||||+|.+......... +....+.+.|+..++.
T Consensus 80 ~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 80 ATFLNISAASLTS--KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp CEEEEEESTTTSS--SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC---
T ss_pred CCeEEeeHHHHhh--cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcc--hHHHHHHHHHHHHHhcccccC
Confidence 7788888877753 456677888888998888888999999999999765432111 2233455555444431
Q ss_pred --CCeEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcc
Q 004878 422 --GELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (725)
Q Consensus 422 --~~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~ 498 (725)
..+++|++||..+ .+++++.+|| ..+.++.|+.+++..|++.++. ..+..++++.++.++..+.+|..
T Consensus 156 ~~~~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~----~~~~~~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ----KQGSPLDTEALRRLAKITDGYSG 226 (297)
T ss_dssp ---CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG----GGSCCSCHHHHHHHHHHTTTCCH
T ss_pred CCCcEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHcCCCCH
Confidence 4588999999876 7899999999 5899999999999999987765 34567889999999998876643
Q ss_pred cCCCchhHHHHHHHHHH
Q 004878 499 DRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 499 ~r~lp~~ai~ll~~a~~ 515 (725)
.+...+++.+..
T Consensus 227 -----~~l~~l~~~a~~ 238 (297)
T 3b9p_A 227 -----SDLTALAKDAAL 238 (297)
T ss_dssp -----HHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHH
Confidence 344456655544
No 29
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.79 E-value=1.5e-18 Score=192.44 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=155.1
Q ss_pred hhhhhhcCCCcccccHHHHHHHHHHHh------------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCe
Q 004878 281 TARASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (725)
Q Consensus 281 ~~~~~~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~ 348 (725)
.....+-.|++++|.++.++.|.+.+. .....++||+||||||||++|+++|..+ .+..
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~ 195 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNST 195 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---------CSSE
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---------CCCC
Confidence 334455678999999999999988762 2345789999999999999999999987 2557
Q ss_pred EEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-----CCC
Q 004878 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGE 423 (725)
Q Consensus 349 l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~ 423 (725)
++.+++..+.. .+.|+.+..++.++..+....++||||||||.+.+...... ......+.+.|+..+. ...
T Consensus 196 ~~~v~~~~l~~--~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 196 FFSISSSDLVS--KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp EEEECCC-----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC--CGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred EEEEeHHHHHh--hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc--ccHHHHHHHHHHHHHhCcccCCCC
Confidence 78888877653 34455556688888888888899999999999976543321 1223455666665553 456
Q ss_pred eEEEEeccchhhhhhhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCC
Q 004878 424 LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502 (725)
Q Consensus 424 v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~l 502 (725)
++||++||.+. .+++++.+||. .+.++.|+.+++..||+.++. ..+..+++..+..++..+.+|..
T Consensus 272 v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----~~~~~l~~~~l~~la~~t~G~sg---- 338 (444)
T 2zan_A 272 ILVLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG----STQNSLTEADFQELGRKTDGYSG---- 338 (444)
T ss_dssp CEEEEEESCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT----TSCEECCHHHHHHHHHHTTTCCH----
T ss_pred EEEEecCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHcCCCCH----
Confidence 89999999886 78999999995 899999999999999987765 33456789999999999887753
Q ss_pred chhHHHHHHHHHHHH
Q 004878 503 PDKAIDLVDEAGSRA 517 (725)
Q Consensus 503 p~~ai~ll~~a~~~~ 517 (725)
.+...++.+|+..+
T Consensus 339 -adl~~l~~~a~~~a 352 (444)
T 2zan_A 339 -ADISIIVRDALMQP 352 (444)
T ss_dssp -HHHHHHHHHHHTHH
T ss_pred -HHHHHHHHHHHHHH
Confidence 56666777666543
No 30
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.79 E-value=3e-18 Score=191.26 Aligned_cols=206 Identities=22% Similarity=0.272 Sum_probs=157.1
Q ss_pred hhhcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEE
Q 004878 284 ASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (725)
Q Consensus 284 ~~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~ 350 (725)
..+..|++++|.++.+++|.+.+.. ....++||+||||||||++|++++..+ +.+++
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv 267 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFF 267 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEEE
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCEE
Confidence 3455788999999999999887653 456789999999999999999999887 77899
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEE
Q 004878 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQC 426 (725)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~v 426 (725)
.+++..+.. .+.|+.+..++.+|..+....+++|||||||.+.+......+ +....+++.|+..++ ...+++
T Consensus 268 ~vn~~~l~~--~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~--~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 268 LINGPEIMS--KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp EEEHHHHHT--SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCC--HHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred EEEchHhhh--hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccc--hHHHHHHHHHHHHhhccccCCceEE
Confidence 999988873 456888888999999999888999999999999875433111 223456666666665 467899
Q ss_pred EEeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCc
Q 004878 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp 503 (725)
|++||.++ .+++++.+ ||. .|.|+.|+.++|.+||+.+...+ .+. .+..+..++..+.+|. +
T Consensus 344 IaaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~----~l~-~~~~l~~la~~t~g~s-----~ 408 (489)
T 3hu3_A 344 MAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM----KLA-DDVDLEQVANETHGHV-----G 408 (489)
T ss_dssp EEEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS----CBC-TTCCHHHHHHTCTTCC-----H
T ss_pred EEecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC----CCc-chhhHHHHHHHccCCc-----H
Confidence 99999986 68899998 884 79999999999999998766532 211 2223556666666554 3
Q ss_pred hhHHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRAH 518 (725)
Q Consensus 504 ~~ai~ll~~a~~~~~ 518 (725)
.+...++.+|...+.
T Consensus 409 ~dL~~L~~~A~~~a~ 423 (489)
T 3hu3_A 409 ADLAALCSEAALQAI 423 (489)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566667777766553
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.79 E-value=1.3e-18 Score=192.33 Aligned_cols=203 Identities=23% Similarity=0.286 Sum_probs=154.8
Q ss_pred hhhhhhhhhcCCCcccccHHHH---HHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 278 VDLTARASEELIDPVIGRETEI---QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i---~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
.+|.++++|.+|++++|+++.+ ..+...+......++||+||||||||++|+.+++.+ +..++.+++
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a 83 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISA 83 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEe
Confidence 5889999999999999999999 788888888777899999999999999999999987 566677664
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchh
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~ 434 (725)
... + ..++...+...........+.||||||||.+. .+.++.|++.++.+.+++|++|+.+.
T Consensus 84 ~~~--~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~-------------~~~q~~LL~~le~~~v~lI~att~n~ 145 (447)
T 3pvs_A 84 VTS--G---VKEIREAIERARQNRNAGRRTILFVDEVHRFN-------------KSQQDAFLPHIEDGTITFIGATTENP 145 (447)
T ss_dssp TTC--C---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHTTSCEEEEEESSCG
T ss_pred ccC--C---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC-------------HHHHHHHHHHHhcCceEEEecCCCCc
Confidence 321 1 11222222222222223468899999999992 23566788899999999999987765
Q ss_pred hhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHH
Q 004878 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH---HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (725)
Q Consensus 435 ~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~---~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~ 511 (725)
...++++|.+||.++.+++|+.+++..+++..+...... .++.+++++++.++..+.+.+ ..++++++
T Consensus 146 ---~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~------R~lln~Le 216 (447)
T 3pvs_A 146 ---SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA------RRALNTLE 216 (447)
T ss_dssp ---GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH------HHHHHHHH
T ss_pred ---ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH------HHHHHHHH
Confidence 347889999999999999999999999999887754322 456799999999999876654 36777887
Q ss_pred HHHHHH
Q 004878 512 EAGSRA 517 (725)
Q Consensus 512 ~a~~~~ 517 (725)
.++..+
T Consensus 217 ~a~~~a 222 (447)
T 3pvs_A 217 MMADMA 222 (447)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 777654
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=1.3e-17 Score=176.03 Aligned_cols=210 Identities=18% Similarity=0.222 Sum_probs=156.0
Q ss_pred cccccHHHHHHHHHHHh---------------cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 291 PVIGRETEIQRIIQILC---------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~---------------~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
+++|+++.++.+.+++. .....++||+||||||||++|+++++.+.... ......++.+++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 69999999998887654 23445799999999999999999999986532 1224578888887
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccch
Q 004878 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (725)
Q Consensus 356 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~ 433 (725)
.+. ....|.....+..++..+ .+.||||||+|.++..... .....++++.|...++.. .+++|++++..
T Consensus 109 ~l~--~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 109 DLV--GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp GTC--CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred Hhh--hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 775 334566666677777655 3679999999999754322 123567788888888754 68999999988
Q ss_pred hhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCC--chhHHHHH
Q 004878 434 EHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL--PDKAIDLV 510 (725)
Q Consensus 434 ~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~l--p~~ai~ll 510 (725)
.+..+..++|+|++|| ..|.|++|+.+++..|++.++.. .++.+++++++.++..+.+....... ...+.+++
T Consensus 180 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp HHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 7666777889999999 79999999999999999888774 46789999999998876643222211 12445566
Q ss_pred HHHHHH
Q 004878 511 DEAGSR 516 (725)
Q Consensus 511 ~~a~~~ 516 (725)
+.++..
T Consensus 256 ~~a~~~ 261 (309)
T 3syl_A 256 DRARLR 261 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 33
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.76 E-value=5.9e-19 Score=205.31 Aligned_cols=204 Identities=19% Similarity=0.268 Sum_probs=137.1
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-.++++.|.++..+.|.+.+.. ..+.++||+||||||||.+|+++|.++ +..++.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~ 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECC
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEec
Confidence 3578899999999888876532 345689999999999999999999998 78899999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCCcHHHHHHHhhhhc----CCCeEEEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCIA 428 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l~----~~~v~vI~ 428 (725)
...++ .++.|+.+..++.+|+.++...|+||||||||.+++..+.+.++ .+....+.+.|+..+. ...++||+
T Consensus 544 ~~~l~--s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~ 621 (806)
T 3cf2_A 544 GPELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp HHHHH--TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEEC
T ss_pred cchhh--ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 99888 56889999999999999999999999999999998765432111 1122345666665554 45689999
Q ss_pred eccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchh
Q 004878 429 STTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
+||.++ .+|+++.| || ..|+|+.|+.++|.+||+.++++. .+. .+..++.+++.+.+|.. .+
T Consensus 622 aTN~p~-----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~----~~~-~~~dl~~la~~t~g~SG-----ad 686 (806)
T 3cf2_A 622 ATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS----PVA-KDVDLEFLAKMTNGFSG-----AD 686 (806)
T ss_dssp C-CCSS-----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC------C-CC---------------------C
T ss_pred eCCCch-----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC----CCC-CCCCHHHHHHhCCCCCH-----HH
Confidence 999987 89999999 99 489999999999999997765422 111 22346777888777754 56
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
...++.+|+..+
T Consensus 687 i~~l~~~A~~~a 698 (806)
T 3cf2_A 687 LTEICQRACKLA 698 (806)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
No 34
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=4.9e-17 Score=192.89 Aligned_cols=179 Identities=17% Similarity=0.210 Sum_probs=131.2
Q ss_pred CcccccHHHHHHHHHHHhcC---------CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc
Q 004878 290 DPVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~---------~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g 360 (725)
+.++|+++.++.+...+... ...++||+||||||||++|+++++.+ +..++.+||+.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 47899999999988877641 22368999999999999999999988 567889998876431
Q ss_pred --------c--cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--------
Q 004878 361 --------A--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (725)
Q Consensus 361 --------~--~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------- 422 (725)
. .+.|.- .-..+.+.+...++.|||||||+.+ ..++++.|+++++.+
T Consensus 528 ~~~~~l~g~~~g~~g~~--~~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~~~~~~~~g~ 592 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFD--QGGLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNILLQVMDNGTLTDNNGR 592 (758)
T ss_dssp SCCSSSCCCCSCSHHHH--HTTHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTTE
T ss_pred hhHhhhcCCCCCCcCcc--ccchHHHHHHhCCCcEEEEeCcccc-------------CHHHHHHHHHHhcCcEEEcCCCC
Confidence 1 021111 1122344455667899999999988 557899999998854
Q ss_pred -----CeEEEEeccchhhh------------------h--hhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHh-
Q 004878 423 -----ELQCIASTTQDEHR------------------T--QFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEA- 475 (725)
Q Consensus 423 -----~v~vI~at~~~~~~------------------~--~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~- 475 (725)
++++|+|+|..... . ...++|+|.+|| ..|.|++|+.+++..|++.++.++..
T Consensus 593 ~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 35689998863200 0 014679999999 58999999999999999988765522
Q ss_pred ----ccCCCCCHHHHHHHHHHh
Q 004878 476 ----HHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 476 ----~~~~~i~~~~l~~l~~~s 493 (725)
...+.+++++++.++..+
T Consensus 673 ~~~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 673 LDQKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp HHHTTEEEEECHHHHHHHHHHH
T ss_pred HHHCCcEEEeCHHHHHHHHHhC
Confidence 123578999999998765
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.76 E-value=7.3e-17 Score=172.71 Aligned_cols=194 Identities=21% Similarity=0.260 Sum_probs=143.0
Q ss_pred hhhhhhhhhhhcCCCcccccHHHHHHHHHHHhc-----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEE
Q 004878 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (725)
Q Consensus 276 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~ 350 (725)
....|.+++++..|++++|+++.++.+..++.. ....++||+||||||||++|+++++.+ +..++
T Consensus 15 ~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~ 84 (338)
T 3pfi_A 15 FDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIK 84 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEE
T ss_pred hhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeE
Confidence 345678899999999999999999998888764 445789999999999999999999887 56677
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-------
Q 004878 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (725)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------- 423 (725)
.+++..+. ..+. +...+.. ...+.+||||||+.+ ..+.++.|+..++.+.
T Consensus 85 ~~~~~~~~----~~~~----~~~~~~~--~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~~~ 141 (338)
T 3pfi_A 85 TTAAPMIE----KSGD----LAAILTN--LSEGDILFIDEIHRL-------------SPAIEEVLYPAMEDYRLDIIIGS 141 (338)
T ss_dssp EEEGGGCC----SHHH----HHHHHHT--CCTTCEEEEETGGGC-------------CHHHHHHHHHHHHTSCC------
T ss_pred Eecchhcc----chhH----HHHHHHh--ccCCCEEEEechhhc-------------CHHHHHHHHHHHHhccchhhccc
Confidence 77765542 1122 2233322 245789999999999 3456777777776543
Q ss_pred -------------eEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Q 004878 424 -------------LQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (725)
Q Consensus 424 -------------v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l 489 (725)
+++|++||... .++++|.+|| ..+.|++|+.+++..+++..... .++.+++++++.+
T Consensus 142 ~~~~~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l 212 (338)
T 3pfi_A 142 GPAAQTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK----LNKTCEEKAALEI 212 (338)
T ss_dssp ---CCCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHH
T ss_pred CccccceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 78999999876 5889999999 68999999999999999877763 4677899999999
Q ss_pred HHHhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 490 VHLSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 490 ~~~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
+..+.++. ..+..++..+...+
T Consensus 213 ~~~~~G~~------r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 213 AKRSRSTP------RIALRLLKRVRDFA 234 (338)
T ss_dssp HHTTTTCH------HHHHHHHHHHHHHH
T ss_pred HHHHCcCH------HHHHHHHHHHHHHH
Confidence 88665442 45666666655444
No 36
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=2.8e-17 Score=168.89 Aligned_cols=209 Identities=19% Similarity=0.261 Sum_probs=142.5
Q ss_pred hhhhhhcCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCe
Q 004878 281 TARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (725)
Q Consensus 281 ~~~~~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~ 348 (725)
++...+..|++++|.++.++.+.+++.. ..+.+++|+||||||||+++++++..+ +.+
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~ 72 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVP 72 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TCC
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCC
Confidence 3444566789999999988887765432 235679999999999999999999987 456
Q ss_pred EEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCCcHHHHHHHhhhhc----CCC
Q 004878 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGE 423 (725)
Q Consensus 349 l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l~----~~~ 423 (725)
++.+++..+.. ...+.....++.+++.+....++++||||+|.+.......... ........+.++..+. ...
T Consensus 73 ~~~i~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 73 FFTISGSDFVE--MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp EEEECSCSSTT--SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred EEEEeHHHHHH--HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 67788776652 3345566778889998887778999999999997643321110 0111133344443333 467
Q ss_pred eEEEEeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHhhhhccc
Q 004878 424 LQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISD 499 (725)
Q Consensus 424 v~vI~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~-l~~l~~~s~~~i~~ 499 (725)
+++|++||.++ .+++++.+ ||. .+.++.|+.++|.+|++.+..++ .+.++. +..++..+.+|
T Consensus 151 ~~vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~------~l~~~~~~~~la~~~~G~--- 216 (257)
T 1lv7_A 151 IIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV------PLAPDIDAAIIARGTPGF--- 216 (257)
T ss_dssp EEEEEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTC---
T ss_pred EEEEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC------CCCccccHHHHHHHcCCC---
Confidence 89999999886 78899988 894 78999999999999997765432 233222 34444444332
Q ss_pred CCCchhHHHHHHHHHHHH
Q 004878 500 RYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 500 r~lp~~ai~ll~~a~~~~ 517 (725)
.+.+...++.+|...+
T Consensus 217 --~~~dl~~l~~~a~~~a 232 (257)
T 1lv7_A 217 --SGADLANLVNEAALFA 232 (257)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 2345666666665543
No 37
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.76 E-value=6.1e-18 Score=178.08 Aligned_cols=205 Identities=18% Similarity=0.260 Sum_probs=146.9
Q ss_pred hcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.-.|++++|.++.++.|.+.+.. ..+.++||+||||||||++|++++..+ +..++.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v 80 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 80 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEE
Confidence 34678899999999998887653 455679999999999999999999987 5678888
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC-CCCCcHHHHHHHhhhhc----CCCeEEE
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCI 427 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~----~~~v~vI 427 (725)
++..+.. .+.|+.+..++.+|+.+....++||||||+|.+......... ..+....+.+.|+..++ ...+++|
T Consensus 81 ~~~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi 158 (301)
T 3cf0_A 81 KGPELLT--MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 158 (301)
T ss_dssp CHHHHHH--HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEE
T ss_pred EhHHHHh--hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 8877753 334455566888899888888999999999999764221100 00122334455555553 4579999
Q ss_pred EeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCch
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
++||.++ .+++++.+ ||. .|.|+.|+.++|.+|++.++... ++. .+..+..++..+.+|. +.
T Consensus 159 ~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~----~~~-~~~~~~~la~~~~g~s-----g~ 223 (301)
T 3cf0_A 159 GATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS----PVA-KDVDLEFLAKMTNGFS-----GA 223 (301)
T ss_dssp EEESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS----CBC-SSCCHHHHHHTCSSCC-----HH
T ss_pred EecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC----CCC-ccchHHHHHHHcCCCC-----HH
Confidence 9999986 78899998 994 89999999999999998776533 211 1222445555555543 34
Q ss_pred hHHHHHHHHHHHH
Q 004878 505 KAIDLVDEAGSRA 517 (725)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (725)
+...++.+|+..+
T Consensus 224 dl~~l~~~a~~~a 236 (301)
T 3cf0_A 224 DLTEICQRACKLA 236 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6667777776654
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.75 E-value=3e-17 Score=168.87 Aligned_cols=205 Identities=19% Similarity=0.241 Sum_probs=138.8
Q ss_pred cCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
-.|++++|.++.++.+.+++.. ..+.++||+||||||||++|+++++.+ +.+++.+++
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~ 72 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAG 72 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEET
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEech
Confidence 3588999999988888776432 345679999999999999999999988 667888888
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC--CCCcHHHHHHHhhhhc----CCCeEEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN--KGTGLDISNLLKPSLG----RGELQCIA 428 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~--~~~~~~~~~~L~~~l~----~~~v~vI~ 428 (725)
..+.. .+.+.....++.++..+....+.||||||+|.+.......... ........+.+...+. ...+++|+
T Consensus 73 ~~~~~--~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~ 150 (262)
T 2qz4_A 73 AEFVE--VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLA 150 (262)
T ss_dssp TTTSS--SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred HHHHh--hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEe
Confidence 87652 3456667778889988887788999999999997543221000 0011122223333232 35689999
Q ss_pred eccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHhhhhcccCCCch
Q 004878 429 STTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~-l~~l~~~s~~~i~~r~lp~ 504 (725)
+||..+ .+++++.+ || ..+.|+.|+.+++.+|++.++... ++..+.+. ...++..+.+|. +.
T Consensus 151 ~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~~l~~~~~g~~-----~~ 216 (262)
T 2qz4_A 151 STNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL----KLTQSSTFYSQRLAELTPGFS-----GA 216 (262)
T ss_dssp EESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT----TCCBTHHHHHHHHHHTCTTCC-----HH
T ss_pred cCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC----CCCcchhhHHHHHHHHCCCCC-----HH
Confidence 999876 67899998 99 589999999999999998887743 44445443 456666555443 34
Q ss_pred hHHHHHHHHHHHH
Q 004878 505 KAIDLVDEAGSRA 517 (725)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (725)
+...+++.++..+
T Consensus 217 ~l~~l~~~a~~~a 229 (262)
T 2qz4_A 217 DIANICNEAALHA 229 (262)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH
Confidence 6666777666543
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=3.8e-17 Score=173.87 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=152.4
Q ss_pred hhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCc-eEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 276 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
-..+|.++++|.+|++++|+++.++.+..++......++ |++||||+|||++++++++.+ +..++++++
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~ 81 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNG 81 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEET
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcc
Confidence 345899999999999999999999999999987666666 556779999999999999988 677888875
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhc-----CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEE
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKS-----GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCI 427 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~-----~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI 427 (725)
+... ...++..+...... .+.||||||+|.+. ..+.++.|+.+++. ..+.+|
T Consensus 82 ~~~~---------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~------------~~~~~~~L~~~le~~~~~~~iI 140 (324)
T 3u61_B 82 SDCK---------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG------------LAESQRHLRSFMEAYSSNCSII 140 (324)
T ss_dssp TTCC---------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG------------GHHHHHHHHHHHHHHGGGCEEE
T ss_pred cccC---------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC------------cHHHHHHHHHHHHhCCCCcEEE
Confidence 4421 22344444433222 56899999999992 14567788888775 567888
Q ss_pred EeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHH---hccCCCCCH-HHHHHHHHHhhhhcccCCCc
Q 004878 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE---AHHNCKFTL-EAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~---~~~~~~i~~-~~l~~l~~~s~~~i~~r~lp 503 (725)
+++|... .+++++.+||..+.|++|+.+++.+|+..+...+. ...++.+++ ++++.++..+.+.+.
T Consensus 141 ~~~n~~~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R----- 210 (324)
T 3u61_B 141 ITANNID-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR----- 210 (324)
T ss_dssp EEESSGG-----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT-----
T ss_pred EEeCCcc-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH-----
Confidence 8888875 68899999999999999999998888777655442 345788888 999999998776553
Q ss_pred hhHHHHHHHHH
Q 004878 504 DKAIDLVDEAG 514 (725)
Q Consensus 504 ~~ai~ll~~a~ 514 (725)
.+++.++.++
T Consensus 211 -~a~~~L~~~~ 220 (324)
T 3u61_B 211 -KTIGELDSYS 220 (324)
T ss_dssp -HHHHHHHHHG
T ss_pred -HHHHHHHHHh
Confidence 5777777665
No 40
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.72 E-value=9.5e-17 Score=177.61 Aligned_cols=204 Identities=21% Similarity=0.275 Sum_probs=146.1
Q ss_pred cCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
-+|++++|.++.++.+.+++.. +.+.++||+||||||||+++++++.++ +..++.+++
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~ 82 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISG 82 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEG
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCH
Confidence 3678999999988887776532 234679999999999999999999987 667888888
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC-CCCCcHHHHHHHhhhhc----CCCeEEEEe
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCIAS 429 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (725)
..+.. .+.|....+++.+|..+....|+||||||+|.+......+.+ .........+.|+..+. ...++||++
T Consensus 83 ~~~~~--~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaa 160 (476)
T 2ce7_A 83 SDFVE--LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAA 160 (476)
T ss_dssp GGTTT--CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEE
T ss_pred HHHHH--HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEe
Confidence 87763 345666778899999998888999999999999654322100 00112234455554443 457999999
Q ss_pred ccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHhhhhcccCCCchh
Q 004878 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~-~l~~l~~~s~~~i~~r~lp~~ 505 (725)
||.++ .+++++.+ ||. .|.|+.|+.++|.+|++.+.++. .+.++ .+..++..+.+|. +.+
T Consensus 161 Tn~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~------~l~~~v~l~~la~~t~G~s-----gad 224 (476)
T 2ce7_A 161 TNRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK------PLAEDVNLEIIAKRTPGFV-----GAD 224 (476)
T ss_dssp ESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTCC-----HHH
T ss_pred cCChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC------CCcchhhHHHHHHhcCCCc-----HHH
Confidence 99986 68899987 995 89999999999999997766532 22222 2555666665554 356
Q ss_pred HHHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRAH 518 (725)
Q Consensus 506 ai~ll~~a~~~~~ 518 (725)
...++.+|+..+.
T Consensus 225 L~~lv~~Aal~A~ 237 (476)
T 2ce7_A 225 LENLVNEAALLAA 237 (476)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777877766553
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.71 E-value=4.4e-16 Score=155.19 Aligned_cols=197 Identities=21% Similarity=0.241 Sum_probs=144.2
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l 357 (725)
.+|.+++++..+++++|+++.++.+.+.+......+++|+||+|+|||++++.+++.+.... ....++.+++...
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 79 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCT
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEeccccc
Confidence 35778888999999999999999999999887777899999999999999999999874321 1234555554332
Q ss_pred hccccccchHHHHHHHHHHHHH------hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEe
Q 004878 358 MAGAKERGELEARVTTLISEIQ------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAS 429 (725)
Q Consensus 358 ~~g~~~~g~~~~~l~~~~~~~~------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~a 429 (725)
.. . ..+...+.... ...+.+|||||+|.+. .+..+.|..+++. ..+.+|++
T Consensus 80 ~~----~----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~l~~~l~~~~~~~~~i~~ 138 (226)
T 2chg_A 80 RG----I----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-------------ADAQAALRRTMEMYSKSCRFILS 138 (226)
T ss_dssp TC----H----HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-------------HHHHHHHHHHHHHTTTTEEEEEE
T ss_pred cC----h----HHHHHHHHHHhcccCCCccCceEEEEeChhhcC-------------HHHHHHHHHHHHhcCCCCeEEEE
Confidence 11 1 11222222222 2467899999999982 2345666666653 56788888
Q ss_pred ccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHH
Q 004878 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDL 509 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~l 509 (725)
++... .+++.+.+||..+.+++|+.++...++...... .++.+++++++.+++.+.+. +..++.+
T Consensus 139 ~~~~~-----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~l~~~ 203 (226)
T 2chg_A 139 CNYVS-----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGD------FRKAINA 203 (226)
T ss_dssp ESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTC------HHHHHHH
T ss_pred eCChh-----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHH
Confidence 88765 678999999999999999999999999877663 36678999999998877654 2455666
Q ss_pred HHHHHH
Q 004878 510 VDEAGS 515 (725)
Q Consensus 510 l~~a~~ 515 (725)
+..++.
T Consensus 204 l~~~~~ 209 (226)
T 2chg_A 204 LQGAAA 209 (226)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655543
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=6.5e-16 Score=167.27 Aligned_cols=207 Identities=20% Similarity=0.263 Sum_probs=138.3
Q ss_pred hhhhhhhhhcC-CCcccccHHHHHHH---HHHHhcCCC--CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEE
Q 004878 278 VDLTARASEEL-IDPVIGRETEIQRI---IQILCRRTK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (725)
Q Consensus 278 ~~l~~~~~~~~-l~~liG~~~~i~~l---~~~L~~~~~--~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ 351 (725)
..+.+.+++.. |++++|+++.++.+ ...+..... .++||+||||||||++|+++++.+.. ...++.
T Consensus 31 l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------~~~~~~ 102 (368)
T 3uk6_A 31 LGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP--------DTPFTA 102 (368)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS--------SCCEEE
T ss_pred cCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--------cCCccc
Confidence 45557777877 99999999987764 444444333 58999999999999999999999842 123333
Q ss_pred eehhhhhcc-----------------------------------------------ccccchHHHHHHHHHHHHHh----
Q 004878 352 LDMGLLMAG-----------------------------------------------AKERGELEARVTTLISEIQK---- 380 (725)
Q Consensus 352 ld~~~l~~g-----------------------------------------------~~~~g~~~~~l~~~~~~~~~---- 380 (725)
+++..+... ....+++...++..+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3uk6_A 103 IAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWRE 182 (368)
T ss_dssp EEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhh
Confidence 333221100 01112233344444443322
Q ss_pred cC-----CeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC--eEEEEec---------cchhhhhhhcccHH
Q 004878 381 SG-----DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--LQCIAST---------TQDEHRTQFEKDKA 444 (725)
Q Consensus 381 ~~-----~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~--v~vI~at---------~~~~~~~~~~ld~~ 444 (725)
.+ +.||||||+|.+ ..+.++.|+..++... ++++++. +... ...++++
T Consensus 183 ~g~~~~~~~vl~IDEi~~l-------------~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~---~~~l~~~ 246 (368)
T 3uk6_A 183 EGKAEIIPGVLFIDEVHML-------------DIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQS---PHGIPID 246 (368)
T ss_dssp HTC---CBCEEEEESGGGS-------------BHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEE---ETTCCHH
T ss_pred hccccccCceEEEhhcccc-------------ChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCC---cccCCHH
Confidence 12 469999999999 3467788888887543 3333332 1111 2368899
Q ss_pred HHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 445 LARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 445 L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
|.+||..+.|++|+.+++..+++..+.. .++.+++++++.++..+.. .-+..++++++.++..+
T Consensus 247 l~sR~~~i~~~~~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~-----G~~r~~~~ll~~a~~~A 310 (368)
T 3uk6_A 247 LLDRLLIVSTTPYSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLE-----TSLRYAIQLITAASLVC 310 (368)
T ss_dssp HHTTEEEEEECCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHH
Confidence 9999988999999999999999887763 4678999999999998873 12357788888777654
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.69 E-value=2e-15 Score=160.43 Aligned_cols=184 Identities=21% Similarity=0.189 Sum_probs=135.2
Q ss_pred hhhhhcCCCcccccHHHHHHHHHHHhc-----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh
Q 004878 282 ARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (725)
Q Consensus 282 ~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~ 356 (725)
+++++..|++++|+++.++.+...+.. ....+++|+||+|||||++|+++++.+ +..++.+++..
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~ 73 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPA 73 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTT
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccc
Confidence 467788999999999999988887753 355789999999999999999999987 45666666654
Q ss_pred hhccccccchHHHHHHHHHHHHHh--cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC------------
Q 004878 357 LMAGAKERGELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ 422 (725)
Q Consensus 357 l~~g~~~~g~~~~~l~~~~~~~~~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------ 422 (725)
+.. ...++..+.. ..+.+|||||++.+ ..+.++.|...++..
T Consensus 74 ~~~-----------~~~l~~~l~~~~~~~~~l~lDEi~~l-------------~~~~~~~L~~~l~~~~~~~v~~~~~~~ 129 (324)
T 1hqc_A 74 IEK-----------PGDLAAILANSLEEGDILFIDEIHRL-------------SRQAEEHLYPAMEDFVMDIVIGQGPAA 129 (324)
T ss_dssp CCS-----------HHHHHHHHTTTCCTTCEEEETTTTSC-------------CHHHHHHHHHHHHHSEEEECCSSSSSC
T ss_pred cCC-----------hHHHHHHHHHhccCCCEEEEECCccc-------------ccchHHHHHHHHHhhhhHHhccccccc
Confidence 321 1122222222 45779999999998 234556666655532
Q ss_pred --------CeEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 004878 423 --------ELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 423 --------~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s 493 (725)
.+++|++|+... .++++|.+|| ..+.+++|+.+++..++..... ..++.+++++++.++..+
T Consensus 130 ~~~~~~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~----~~~~~~~~~~~~~l~~~~ 200 (324)
T 1hqc_A 130 RTIRLELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR----LLGVRITEEAALEIGRRS 200 (324)
T ss_dssp CCEEEECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHHHHHS
T ss_pred cccccCCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHc
Confidence 467899988875 6778899999 5899999999999888877665 346789999999998886
Q ss_pred hhhcccCCCchhHHHHHHHHH
Q 004878 494 ARYISDRYLPDKAIDLVDEAG 514 (725)
Q Consensus 494 ~~~i~~r~lp~~ai~ll~~a~ 514 (725)
.++ |..+..++..+.
T Consensus 201 ~G~------~r~l~~~l~~~~ 215 (324)
T 1hqc_A 201 RGT------MRVAKRLFRRVR 215 (324)
T ss_dssp CSC------HHHHHHHHHHHT
T ss_pred cCC------HHHHHHHHHHHH
Confidence 543 345555555443
No 44
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.68 E-value=8.5e-16 Score=159.12 Aligned_cols=206 Identities=21% Similarity=0.248 Sum_probs=135.8
Q ss_pred cCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
-+|+++.|.++.++.|.+.+.. ..+.+++|+||||||||+++++++..+ +..++.++
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~ 76 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVK 76 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEE
Confidence 4578888988888877764311 334569999999999999999999987 44577777
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeEEEEe
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (725)
...+. ..+.++.+..+..+++.+....++++|+||++.+........ ......+.+.+...+. +..++++++
T Consensus 77 g~~l~--~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~ 152 (274)
T 2x8a_A 77 GPELL--NMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEARQQVFIMAA 152 (274)
T ss_dssp TTTTC--SSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEE
T ss_pred cHHHH--hhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhcccccCCEEEEee
Confidence 76654 245667788899999988777789999999998864322110 0111234444444443 345778888
Q ss_pred ccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHhhhhcccCCCchh
Q 004878 430 TTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~-~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
||.++ .+|+++.| || ..|.++.|+.++|.+||+.+.+.. ....+. +..+..++..+. ...+.+.+
T Consensus 153 tn~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---~~~~~~~~~~~~~la~~~~---~~g~sgad 221 (274)
T 2x8a_A 153 TNRPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG---TKPPLDADVNLEAIAGDLR---CDCYTGAD 221 (274)
T ss_dssp ESCGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT---BTTBBCTTCCHHHHHTCSG---GGSCCHHH
T ss_pred cCChh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc---cCCCCccccCHHHHHHhhc---cCCcCHHH
Confidence 98887 68999998 99 489999999999999998766421 111111 222444444321 22344577
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
...++.+|+..+
T Consensus 222 l~~l~~~a~~~a 233 (274)
T 2x8a_A 222 LSALVREASICA 233 (274)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888887654
No 45
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=1.6e-15 Score=160.97 Aligned_cols=207 Identities=17% Similarity=0.257 Sum_probs=151.4
Q ss_pred hhHhhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEE
Q 004878 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (725)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~ 350 (725)
..+.....+|.++++|..|++++|+++.++.+..++......+++|+||+|+|||++++.+++.+.... ....++
T Consensus 6 ~~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~ 80 (327)
T 1iqp_A 6 REVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFL 80 (327)
T ss_dssp HHHHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEE
T ss_pred hhhcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceE
Confidence 445556779999999999999999999999999999887777899999999999999999999874321 022355
Q ss_pred EeehhhhhccccccchHHHHHHHHHHH--HHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEE
Q 004878 351 SLDMGLLMAGAKERGELEARVTTLISE--IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQC 426 (725)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~l~~~~~~--~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~v 426 (725)
.+++..... ...+...+...... ....++.+++|||+|.+ ..+.++.|..+++. ..+.+
T Consensus 81 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~ 143 (327)
T 1iqp_A 81 ELNASDERG----INVIREKVKEFARTKPIGGASFKIIFLDEADAL-------------TQDAQQALRRTMEMFSSNVRF 143 (327)
T ss_dssp EEETTCHHH----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-------------CHHHHHHHHHHHHHTTTTEEE
T ss_pred EeeccccCc----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-------------CHHHHHHHHHHHHhcCCCCeE
Confidence 565543211 01111222222110 01145789999999999 23566777777774 56788
Q ss_pred EEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhH
Q 004878 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~a 506 (725)
|++++... .+.+++.+||..+.+++|+.++...++...+. ..++.+++++++.++..+.+.. ..+
T Consensus 144 i~~~~~~~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g~~------r~~ 208 (327)
T 1iqp_A 144 ILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE----NEGLELTEEGLQAILYIAEGDM------RRA 208 (327)
T ss_dssp EEEESCGG-----GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH----TTTCEECHHHHHHHHHHHTTCH------HHH
T ss_pred EEEeCCcc-----ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHCCCCH------HHH
Confidence 88887765 57899999999999999999999998877665 4577899999999998876543 456
Q ss_pred HHHHHHHH
Q 004878 507 IDLVDEAG 514 (725)
Q Consensus 507 i~ll~~a~ 514 (725)
+.+++.+.
T Consensus 209 ~~~l~~~~ 216 (327)
T 1iqp_A 209 INILQAAA 216 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 46
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.67 E-value=5.5e-16 Score=164.06 Aligned_cols=200 Identities=19% Similarity=0.234 Sum_probs=147.9
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l 357 (725)
.+|.++++|..|++++|+++.++.+...+......+++|+||+|+|||++++.+++.+.... .+..++.+++...
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 79 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTST
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccc
Confidence 47889999999999999999999999998887777899999999999999999999874321 0234556665543
Q ss_pred hccccccchHHHHHHHHHHHH--HhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccch
Q 004878 358 MAGAKERGELEARVTTLISEI--QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (725)
Q Consensus 358 ~~g~~~~g~~~~~l~~~~~~~--~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~ 433 (725)
.. .......+....... ....+.|++|||+|.+ ..+.++.|..+++. ..+.+|++++..
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 80 RG----IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-------------TADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp TC----TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-------------CHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred cC----hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-------------CHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 21 111222222221110 1144789999999999 33567788888876 568888888876
Q ss_pred hhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q 004878 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (725)
Q Consensus 434 ~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a 513 (725)
. .+.+++.+||..+.+++|+.+++..++...+. ..++.+++++++.++..+.+.+ ..++..++.+
T Consensus 143 ~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~~------r~~~~~l~~~ 207 (319)
T 2chq_A 143 S-----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE----KEGVKITEDGLEALIYISGGDF------RKAINALQGA 207 (319)
T ss_dssp G-----GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH----TTCCCBCHHHHHHHHHTTTTCH------HHHHHHHHHH
T ss_pred h-----hcchHHHhhCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 5 67899999999999999999999999887765 4577899999999988776543 3556666544
Q ss_pred H
Q 004878 514 G 514 (725)
Q Consensus 514 ~ 514 (725)
+
T Consensus 208 ~ 208 (319)
T 2chq_A 208 A 208 (319)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=1.1e-15 Score=161.88 Aligned_cols=196 Identities=18% Similarity=0.259 Sum_probs=149.0
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l 357 (725)
.+|.++++|..|++++|+++.++.+...+......+++|+||+|+|||++++.+++.+.... .+..++.+++...
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDD 83 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSC
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccc
Confidence 47888999999999999999999999999887777799999999999999999999874321 0234555554331
Q ss_pred hccccccchHHHHHHHHHHHHH-------hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEE
Q 004878 358 MAGAKERGELEARVTTLISEIQ-------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (725)
Q Consensus 358 ~~g~~~~g~~~~~l~~~~~~~~-------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 428 (725)
.+ ...++.+++.+. ...+.|++|||+|.+ ..+.++.|..+++. ..+.+|+
T Consensus 84 ------~~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~il 142 (323)
T 1sxj_B 84 ------RG--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-------------TAGAQQALRRTMELYSNSTRFAF 142 (323)
T ss_dssp ------CS--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-------------CHHHHHTTHHHHHHTTTTEEEEE
T ss_pred ------cC--hHHHHHHHHHHHhccccCCCCCceEEEEECcccC-------------CHHHHHHHHHHHhccCCCceEEE
Confidence 11 223444555444 234789999999999 23456677777764 5577888
Q ss_pred eccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHH
Q 004878 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ 508 (725)
+|+... .+.+.+.+||..+.+++|+.++..+++...+.. .++.+++++++.++..+.+. +..++.
T Consensus 143 ~~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~------~r~a~~ 207 (323)
T 1sxj_B 143 ACNQSN-----KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEGD------MRQAIN 207 (323)
T ss_dssp EESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTC------HHHHHH
T ss_pred EeCChh-----hchhHHHhhceEEeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHH
Confidence 877654 678999999999999999999999999887763 36789999999999988654 346677
Q ss_pred HHHHHH
Q 004878 509 LVDEAG 514 (725)
Q Consensus 509 ll~~a~ 514 (725)
+++..+
T Consensus 208 ~l~~~~ 213 (323)
T 1sxj_B 208 NLQSTV 213 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=9.4e-16 Score=164.83 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=146.3
Q ss_pred hhhhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 274 EQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 274 ~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
..-..+|.++++|..|++++|+++.++.+...+......+++|+||||+|||++++++++.+.... .....++.++
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~ 96 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELN 96 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEEC
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEc
Confidence 344578999999999999999999999999999887667899999999999999999999874210 0123455555
Q ss_pred hhhhhccccccchHHHHHHHHHHH-----------H-HhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC
Q 004878 354 MGLLMAGAKERGELEARVTTLISE-----------I-QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~-----------~-~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~ 421 (725)
+.... ..+.+...+...... . ....+.||||||+|.+ ....++.|+.+++.
T Consensus 97 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-------------~~~~~~~Ll~~le~ 159 (353)
T 1sxj_D 97 ASDER----GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-------------TADAQSALRRTMET 159 (353)
T ss_dssp SSSCC----CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-------------CHHHHHHHHHHHHH
T ss_pred ccccc----chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-------------CHHHHHHHHHHHHh
Confidence 44321 011111111111110 0 0124569999999999 23456777777763
Q ss_pred --CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhccc
Q 004878 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (725)
Q Consensus 422 --~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~ 499 (725)
....+|.+++... .+.+++.+||..+.+.+|+.++...++...+. ..++.+++++++.++..+.+.
T Consensus 160 ~~~~~~~il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~--- 227 (353)
T 1sxj_D 160 YSGVTRFCLICNYVT-----RIIDPLASQCSKFRFKALDASNAIDRLRFISE----QENVKCDDGVLERILDISAGD--- 227 (353)
T ss_dssp TTTTEEEEEEESCGG-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHHHHHTSSC---
T ss_pred cCCCceEEEEeCchh-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCC---
Confidence 3466777777665 68899999999999999999999999887765 457789999999999988754
Q ss_pred CCCchhHHHHHHHHHHH
Q 004878 500 RYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 500 r~lp~~ai~ll~~a~~~ 516 (725)
+..++.+++.+...
T Consensus 228 ---~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 228 ---LRRGITLLQSASKG 241 (353)
T ss_dssp ---HHHHHHHHHHTHHH
T ss_pred ---HHHHHHHHHHHHHh
Confidence 34677777665544
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.65 E-value=1.8e-15 Score=152.71 Aligned_cols=200 Identities=19% Similarity=0.177 Sum_probs=142.8
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhcCCC-CCceEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~-~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l------------- 344 (725)
+|.+++++..+++++|++++++.+...+..... ..++|+||+|+|||++++.+++.+.........
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 91 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHT
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhc
Confidence 567888999999999999999999999887554 358999999999999999999988542111000
Q ss_pred -CCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh
Q 004878 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (725)
Q Consensus 345 -~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (725)
....++.++... ......+..+++.+. ..++.+|+|||+|.+ ..+..+.|...+
T Consensus 92 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-------------~~~~~~~l~~~l 150 (250)
T 1njg_A 92 GRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKTL 150 (250)
T ss_dssp TCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-------------CHHHHHHHHHHH
T ss_pred cCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-------------cHHHHHHHHHHH
Confidence 001122222111 112233445554432 234789999999998 234566677777
Q ss_pred cC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 420 ~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
++ ..+.+|++++... .+++.+.+|+..+.+++|+.++..+++...+.. .++.+++++++.+++.+.+.
T Consensus 151 ~~~~~~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~- 220 (250)
T 1njg_A 151 EEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGS- 220 (250)
T ss_dssp HSCCTTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTTC-
T ss_pred hcCCCceEEEEEeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC-
Confidence 64 4678888887765 678899999999999999999999999877653 46788999999999887654
Q ss_pred ccCCCchhHHHHHHHHH
Q 004878 498 SDRYLPDKAIDLVDEAG 514 (725)
Q Consensus 498 ~~r~lp~~ai~ll~~a~ 514 (725)
|..+..+++.++
T Consensus 221 -----~~~~~~~~~~~~ 232 (250)
T 1njg_A 221 -----LRDALSLTDQAI 232 (250)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHH
Confidence 456677776664
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=4.4e-15 Score=158.39 Aligned_cols=161 Identities=17% Similarity=0.293 Sum_probs=117.8
Q ss_pred hhhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 276 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
|..++.+++++..++.++|+++.++.+...+.. +.++||+||||||||++|+++++.+ +..++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~~ 80 (331)
T 2r44_A 13 YYRNKIKEVIDEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEECC
T ss_pred HHHHHHHHHHHHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEecC
Confidence 556888999999999999999999998888776 5689999999999999999999987 3445555542
Q ss_pred ------hhhcccc---ccchHHHHHHHHHHHHHhcC---CeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-
Q 004878 356 ------LLMAGAK---ERGELEARVTTLISEIQKSG---DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG- 422 (725)
Q Consensus 356 ------~l~~g~~---~~g~~~~~l~~~~~~~~~~~---~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~- 422 (725)
.+..... ..+.+. ...+ ..||||||++.+ ..+.++.|...++.+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~----------~~~g~l~~~vl~iDEi~~~-------------~~~~~~~Ll~~l~~~~ 137 (331)
T 2r44_A 81 PDLLPSDLIGTMIYNQHKGNFE----------VKKGPVFSNFILADEVNRS-------------PAKVQSALLECMQEKQ 137 (331)
T ss_dssp TTCCHHHHHEEEEEETTTTEEE----------EEECTTCSSEEEEETGGGS-------------CHHHHHHHHHHHHHSE
T ss_pred CCCChhhcCCceeecCCCCceE----------eccCcccccEEEEEccccC-------------CHHHHHHHHHHHhcCc
Confidence 1111000 001100 0011 269999999998 345677777776632
Q ss_pred ------------CeEEEEeccchhhhhhhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHH
Q 004878 423 ------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLRE 471 (725)
Q Consensus 423 ------------~v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~ 471 (725)
.+++|+++|+.++.....++++|.+||. .+.++.|+.+++.+||+....
T Consensus 138 ~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 138 VTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp EEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred eeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 4678888887664444458999999997 599999999999999987654
No 51
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.64 E-value=2.6e-15 Score=158.25 Aligned_cols=213 Identities=22% Similarity=0.281 Sum_probs=138.5
Q ss_pred cccccHHHHHHHHHHHhc--------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh
Q 004878 291 PVIGRETEIQRIIQILCR--------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~--------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~ 356 (725)
.++|+++.++.+...+.. ..+.++||+||||||||++|+++++.+ +.+++.+++..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchh
Confidence 589999999999887754 356789999999999999999999988 56788888877
Q ss_pred hhccccccc-hHHHHHHHHHHHH----Hh-cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--------
Q 004878 357 LMAGAKERG-ELEARVTTLISEI----QK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (725)
Q Consensus 357 l~~g~~~~g-~~~~~l~~~~~~~----~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------- 422 (725)
+... .+.+ .....++.++... .. ..+.||||||+|.+....... +.......+++.|+++++..
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~-~~~~~~~~~~~~Ll~~le~~~~~~~~~~ 163 (310)
T 1ofh_A 86 FTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTKHGM 163 (310)
T ss_dssp GSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC-SSHHHHHHHHHHHHHHHHCCEEEETTEE
T ss_pred cccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc-ccchhHHHHHHHHHHHhcCCeEeccccc
Confidence 6531 1111 1223344444321 11 235699999999996543210 00001112467777777754
Q ss_pred ----CeEEEEeccchhhhhhhcccHHHHcccc-eEEecCCCHHHHHHHHH----HHHHHHH-----hccCCCCCHHHHHH
Q 004878 423 ----ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILL----GLREKYE-----AHHNCKFTLEAINA 488 (725)
Q Consensus 423 ----~v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~----~~~~~~~-----~~~~~~i~~~~l~~ 488 (725)
.+++|++++.... ....++++|.+||. .|.|++|+.+++..|++ .+..++. ....+.+++++++.
T Consensus 164 ~~~~~~~~i~~~~~~~~-~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVA-RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 242 (310)
T ss_dssp EECTTCEEEEEECCSSS-CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHH
T ss_pred ccCCcEEEEEcCCcccC-CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHH
Confidence 6788888532110 11268899999995 69999999999999998 3433332 12234789999999
Q ss_pred HHHHhhhhc--ccCCCchhHHHHHHHHHHH
Q 004878 489 AVHLSARYI--SDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 489 l~~~s~~~i--~~r~lp~~ai~ll~~a~~~ 516 (725)
++..+...- ....-...+..+++.+...
T Consensus 243 l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~ 272 (310)
T 1ofh_A 243 IAEAAFRVNEKTENIGARRLHTVMERLMDK 272 (310)
T ss_dssp HHHHHHHHHHHSCCCTTHHHHHHHHHHSHH
T ss_pred HHHHhhhhcccccccCcHHHHHHHHHHHHh
Confidence 998874310 0011224566666665544
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.64 E-value=1.4e-17 Score=172.12 Aligned_cols=169 Identities=25% Similarity=0.344 Sum_probs=114.4
Q ss_pred hhcCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 285 SEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 285 ~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.+..|++++|+++.++.+.+++.. ..+.++||+||||||||++|++++..+ +..++.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~v 75 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFFSM 75 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCCCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEe
Confidence 345688999999888887776542 345679999999999999999999987 3345555
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCC---CCCCCCcHHHHHHHhhhhc-----CCCe
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVG---RGNKGTGLDISNLLKPSLG-----RGEL 424 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~---~~~~~~~~~~~~~L~~~l~-----~~~v 424 (725)
++..+... ..+.....++.+++.+....+.||||||+|.+......+ ..+ ......++.|+..++ ...+
T Consensus 76 ~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~v 152 (268)
T 2r62_A 76 GGSSFIEM--FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGN-DEREQTLNQLLAEMDGFGSENAPV 152 (268)
T ss_dssp CSCTTTTS--CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------C-CCSCSSTTTTTTTTTCSSCSCSCC
T ss_pred chHHHHHh--hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCc-hhHHHHHHHHHHHhhCcccCCCCE
Confidence 65554321 112222234556666766678899999999996542110 000 011122333444443 2348
Q ss_pred EEEEeccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHH
Q 004878 425 QCIASTTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLRE 471 (725)
Q Consensus 425 ~vI~at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~ 471 (725)
++|++||..+ .+++++.+ || ..+.|+.|+.+++.++|+.++.
T Consensus 153 ~vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 153 IVLAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp EEEECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred EEEEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 8999999876 67889988 88 5799999999999999977654
No 53
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.64 E-value=4.9e-15 Score=160.46 Aligned_cols=202 Identities=18% Similarity=0.179 Sum_probs=146.5
Q ss_pred hhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCccc------------
Q 004878 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------ 344 (725)
Q Consensus 278 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l------------ 344 (725)
.+|.++++|..|++++|++++++.+...+......+ ++|+||+|+|||++++.+++.+.........
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 367889999999999999999999999988765544 6899999999999999999988432111000
Q ss_pred --CCCeEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh
Q 004878 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (725)
Q Consensus 345 --~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (725)
....++.++... ...... ++.+++.+.. .++.|++|||+|.+ ..+..+.|..+
T Consensus 84 ~~~~~~~~~~~~~~----~~~~~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~Ll~~ 142 (373)
T 1jr3_A 84 QGRFVDLIEIDAAS----RTKVED----TRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKT 142 (373)
T ss_dssp TSCCSSCEEEETTC----SCCSSC----HHHHHHHTTSCCSSSSSEEEEEECGGGS-------------CHHHHHHHHHH
T ss_pred ccCCCceEEecccc----cCCHHH----HHHHHHHHhhccccCCeEEEEEECcchh-------------cHHHHHHHHHH
Confidence 001233333221 011122 4455555432 34689999999999 23466778888
Q ss_pred hcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 419 l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
++. ..+++|++++... .+.+.+.+|+..+.+++|+.++...+++..+.. .++.+++++++.++..+.+.
T Consensus 143 le~~~~~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G~ 213 (373)
T 1jr3_A 143 LEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGS 213 (373)
T ss_dssp HHSCCSSEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSSC
T ss_pred HhcCCCceEEEEEeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCCC
Confidence 875 4678888877654 567899999999999999999999999887764 36789999999999887654
Q ss_pred cccCCCchhHHHHHHHHHH
Q 004878 497 ISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 497 i~~r~lp~~ai~ll~~a~~ 515 (725)
+..+..+++.+..
T Consensus 214 ------~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 214 ------LRDALSLTDQAIA 226 (373)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHH
Confidence 3467777776653
No 54
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=4.2e-16 Score=176.21 Aligned_cols=200 Identities=16% Similarity=0.190 Sum_probs=139.5
Q ss_pred hhhhhhhhhhhcCCCcccccHHHHHHHHHHHhc-----------------CCCCCceEEcCCCChHHHHHHHHHHHHHhc
Q 004878 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCR-----------------RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (725)
Q Consensus 276 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~-----------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~ 338 (725)
-...|+++++|..|++++|+++.++.+.+++.. ....++||+||||||||++|+++++.+
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--- 101 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--- 101 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---
Confidence 345799999999999999999999999998875 134689999999999999999999988
Q ss_pred CCCcccCCCeEEEeehhhhhccccccchHHHH---------HHHHHHHH-----HhcCCeEEEEccchhhhhCCCCCCCC
Q 004878 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEAR---------VTTLISEI-----QKSGDVILFIDEVHTLIGSGTVGRGN 404 (725)
Q Consensus 339 ~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~---------l~~~~~~~-----~~~~~~IL~IDEid~l~~~~~~~~~~ 404 (725)
+..++.+++....... ..... +..++..+ ....+.||||||+|.+...
T Consensus 102 -------~~~~i~in~s~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~------- 163 (516)
T 1sxj_A 102 -------GYDILEQNASDVRSKT----LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG------- 163 (516)
T ss_dssp -------TCEEEEECTTSCCCHH----HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT-------
T ss_pred -------CCCEEEEeCCCcchHH----HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh-------
Confidence 6788888876543110 00000 11111111 1245789999999999532
Q ss_pred CCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHH
Q 004878 405 KGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484 (725)
Q Consensus 405 ~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~ 484 (725)
.....+.|..+++.....+|++++.... ...+.+.+|+..+.|++|+.+++.++|..++.+ .++.++++
T Consensus 164 ---~~~~l~~L~~~l~~~~~~iIli~~~~~~----~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----~~~~i~~~ 232 (516)
T 1sxj_A 164 ---DRGGVGQLAQFCRKTSTPLILICNERNL----PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR----EKFKLDPN 232 (516)
T ss_dssp ---STTHHHHHHHHHHHCSSCEEEEESCTTS----STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCCCTT
T ss_pred ---hHHHHHHHHHHHHhcCCCEEEEEcCCCC----ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHH
Confidence 1223556677776666555555554320 122457778889999999999999999887763 36778999
Q ss_pred HHHHHHHHhhhhcccCCCchhHHHHHHHH
Q 004878 485 AINAAVHLSARYISDRYLPDKAIDLVDEA 513 (725)
Q Consensus 485 ~l~~l~~~s~~~i~~r~lp~~ai~ll~~a 513 (725)
++..+++.+.+.+ ..+++++..+
T Consensus 233 ~l~~la~~s~Gdi------R~~i~~L~~~ 255 (516)
T 1sxj_A 233 VIDRLIQTTRGDI------RQVINLLSTI 255 (516)
T ss_dssp HHHHHHHHTTTCH------HHHHHHHTHH
T ss_pred HHHHHHHHcCCcH------HHHHHHHHHH
Confidence 9999998876543 2556665443
No 55
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.63 E-value=8e-15 Score=150.25 Aligned_cols=203 Identities=22% Similarity=0.274 Sum_probs=133.9
Q ss_pred cCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
-+|++++|.++.+..+.++... ..+.+++|+|||||||||++++++..+ +..++.++.
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~~~~ 82 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASG 82 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeeH
Confidence 4677889988777766654332 224458999999999999999999887 345667776
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC-CCCCcHHHHHHHhhhhcC----CCeEEEEe
Q 004878 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLGR----GELQCIAS 429 (725)
Q Consensus 355 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~~----~~v~vI~a 429 (725)
..+.. ...+.....+..+++.+....+.+++|||+|.+........+ .........+.+...++. ..++++++
T Consensus 83 ~~~~~--~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 83 SDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHH--SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEE
T ss_pred HHHHH--HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEc
Confidence 66542 234556667888888877666899999999998643221000 000112233444444432 33677788
Q ss_pred ccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHhhhhcccCCCchh
Q 004878 430 TTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~-l~~l~~~s~~~i~~r~lp~~ 505 (725)
++.++ .+|+++.+ || ..|.++.|+.++|.+||+.+.. +..++++. +..++..+.+|.. .+
T Consensus 161 t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~~-----~d 224 (254)
T 1ixz_A 161 TNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFVG-----AD 224 (254)
T ss_dssp ESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCCH-----HH
T ss_pred cCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc------CCCCCcccCHHHHHHHcCCCCH-----HH
Confidence 88876 58899998 78 4799999999999999976543 22333332 5667776665542 56
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
+..++.+|...+
T Consensus 225 l~~~~~~a~~~a 236 (254)
T 1ixz_A 225 LENLLNEAALLA 236 (254)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776544
No 56
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.62 E-value=2.8e-15 Score=156.99 Aligned_cols=162 Identities=16% Similarity=0.172 Sum_probs=108.1
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHH----HhcCCe
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI----QKSGDV 384 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~----~~~~~~ 384 (725)
+.+.++||+||||||||++|+++|+.+ +.+++.++++.+.. .+.|+.+..++.++..+ +...++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~ 101 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAAEIIRKGNMC 101 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHHC--C---HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhhh--ccCchhHHHHHHHHHHHHHHHhcCCCe
Confidence 344578999999999999999999999 77889999988873 45678888888888877 456789
Q ss_pred EEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc---------------CCCeEEEEeccchhhhhhhcccHHHHc--
Q 004878 385 ILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---------------RGELQCIASTTQDEHRTQFEKDKALAR-- 447 (725)
Q Consensus 385 IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---------------~~~v~vI~at~~~~~~~~~~ld~~L~~-- 447 (725)
||||||||.+.+..............+++.|+.++. ...+++|+|||..+ .+++++.|
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~ 176 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDG 176 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHH
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCC
Confidence 999999999976332111101123356677777763 34689999999876 78899987
Q ss_pred ccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 004878 448 RFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 448 Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i 497 (725)
||..+. ..|+.+++.+|++.+.. .. .++.+ .+..++.+|.
T Consensus 177 R~d~~i-~~P~~~~r~~Il~~~~~----~~--~~~~~---~l~~~~~~~~ 216 (293)
T 3t15_A 177 RMEKFY-WAPTREDRIGVCTGIFR----TD--NVPAE---DVVKIVDNFP 216 (293)
T ss_dssp HEEEEE-ECCCHHHHHHHHHHHHG----GG--CCCHH---HHHHHHHHSC
T ss_pred CCceeE-eCcCHHHHHHHHHHhcc----CC--CCCHH---HHHHHhCCCC
Confidence 885322 36899999999986554 22 34433 4445555553
No 57
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=1.7e-15 Score=163.08 Aligned_cols=204 Identities=12% Similarity=0.157 Sum_probs=141.8
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHH-hcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcc-cC-----------
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQIL-CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF-LL----------- 345 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L-~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~-l~----------- 345 (725)
+|+++++|..|++++|+++.++.+..++ ......+++|+||+|+||||+++.+++.+........ ..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 6899999999999999999999999988 6666667999999999999999999997633211000 00
Q ss_pred -------CCeEEEeehhhhhccccccchHHHHHHHHHHHHH--------------hcCCeEEEEccchhhhhCCCCCCCC
Q 004878 346 -------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ--------------KSGDVILFIDEVHTLIGSGTVGRGN 404 (725)
Q Consensus 346 -------~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~--------------~~~~~IL~IDEid~l~~~~~~~~~~ 404 (725)
...++.++.... +.. . ...++..++.+. ..++.|++|||++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~---~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---------- 146 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDM--GNN---D-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---------- 146 (354)
T ss_dssp ---CCEECSSEEEECCC------C---C-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSS----------
T ss_pred ceeeeecccceEEecHhhc--CCc---c-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc----------
Confidence 001122221110 000 0 012334444332 125679999999997
Q ss_pred CCCcHHHHHHHhhhhcC--CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCC
Q 004878 405 KGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482 (725)
Q Consensus 405 ~~~~~~~~~~L~~~l~~--~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~ 482 (725)
..+.++.|...++. ....+|.+|+..+ .+.+++.+||..+.|++|+.++...+|+..+.+ .++.++
T Consensus 147 ---~~~~~~~L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 214 (354)
T 1sxj_E 147 ---TKDAQAALRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLE 214 (354)
T ss_dssp ---CHHHHHHHHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEEC
T ss_pred ---CHHHHHHHHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCC
Confidence 33456667776663 4567777777654 578999999999999999999999999888763 367888
Q ss_pred -HHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHH
Q 004878 483 -LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 483 -~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~ 516 (725)
+++++.++..+.+.+ .+++.+++.+...
T Consensus 215 ~~~~l~~i~~~~~G~~------r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 215 TKDILKRIAQASNGNL------RVSLLMLESMALN 243 (354)
T ss_dssp CSHHHHHHHHHHTTCH------HHHHHHHTHHHHT
T ss_pred cHHHHHHHHHHcCCCH------HHHHHHHHHHHHh
Confidence 999999999887654 4777777766543
No 58
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.62 E-value=2.3e-15 Score=167.49 Aligned_cols=204 Identities=22% Similarity=0.272 Sum_probs=140.5
Q ss_pred hcCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 286 EELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
..+|++++|.++.+..+.++... ..+.+++|+||||||||+|+++++..+ +..++.++
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i~ 96 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 96 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 45789999999988887776432 123568999999999999999999987 45678888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC-CCCCcHHHHHHHhhhhc----CCCeEEEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCIA 428 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~----~~~v~vI~ 428 (725)
+..+.. .+.+....+++.+|+.+....++|+||||||.+......+.+ ..+......+.|+..+. +..+++|+
T Consensus 97 g~~~~~--~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 97 GSDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 174 (499)
T ss_dssp GGGGTS--SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEE
T ss_pred hhHHHH--hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEE
Confidence 877653 345666777888888776556889999999998653321100 00011223344444443 24578889
Q ss_pred eccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHhhhhcccCCCch
Q 004878 429 STTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~-l~~l~~~s~~~i~~r~lp~ 504 (725)
+||.++ .+|+++.+ || ..|.|+.|+.++|.+||+.+.+ ++.+++++ +..++..+.++. +.
T Consensus 175 atn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------~~~l~~dv~l~~lA~~t~G~~-----ga 238 (499)
T 2dhr_A 175 ATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----GA 238 (499)
T ss_dssp CCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------SSCCCCSSTTHHHHTTSCSCC-----HH
T ss_pred ecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHhcCCCC-----HH
Confidence 999886 58999998 78 4899999999999999965443 23344332 555555555443 25
Q ss_pred hHHHHHHHHHHHH
Q 004878 505 KAIDLVDEAGSRA 517 (725)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (725)
++..++.+|+..+
T Consensus 239 dL~~lv~~Aa~~A 251 (499)
T 2dhr_A 239 DLENLLNEAALLA 251 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6677777776654
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5.2e-15 Score=155.04 Aligned_cols=212 Identities=9% Similarity=0.065 Sum_probs=142.9
Q ss_pred ccccHHHHHHHHHHHhc----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc--------
Q 004878 292 VIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------- 359 (725)
Q Consensus 292 liG~~~~i~~l~~~L~~----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-------- 359 (725)
+.||++++.++...|.. ..+.+++|+||||||||++++.+++++........+....+++++|..+..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 78999999998876655 677889999999999999999999998642111111245677888654321
Q ss_pred -----ccc-ccchHHHHHHHHHHHH--HhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhh--hcCCCeEEEEe
Q 004878 360 -----GAK-ERGELEARVTTLISEI--QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS--LGRGELQCIAS 429 (725)
Q Consensus 360 -----g~~-~~g~~~~~l~~~~~~~--~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~--l~~~~v~vI~a 429 (725)
|.. ..+.....+..+|..+ ....+.|++|||+|.+. .+++...|..+ ....++.+|++
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~------------~q~~L~~l~~~~~~~~s~~~vI~i 169 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL------------SEKILQYFEKWISSKNSKLSIICV 169 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC------------CTHHHHHHHHHHHCSSCCEEEEEE
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh------------cchHHHHHHhcccccCCcEEEEEE
Confidence 111 1233455667777765 23467899999999994 11222222222 24567899988
Q ss_pred ccchhhhhhhcccHHHHccc--ceEEecCCCHHHHHHHHHHHHHHHHhc-------------------------------
Q 004878 430 TTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAH------------------------------- 476 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~Rf--~~I~i~~Ps~ee~~~IL~~~~~~~~~~------------------------------- 476 (725)
+|..+.-. ..+++++.+|| +.|.|++++.+|...||+..+......
T Consensus 170 ~n~~d~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (318)
T 3te6_A 170 GGHNVTIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIV 248 (318)
T ss_dssp CCSSCCCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEE
T ss_pred ecCcccch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence 87764211 23566778898 479999999999999999988765321
Q ss_pred cCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHH
Q 004878 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519 (725)
Q Consensus 477 ~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~~ 519 (725)
..+.+++++++.+++.+...-++- .+|++++..|+..+..
T Consensus 249 ~~~~i~~~ai~~~A~~vA~~~GD~---R~Al~ilr~A~~~ae~ 288 (318)
T 3te6_A 249 INHKINNKITQLIAKNVANVSGST---EKAFKICEAAVEISKK 288 (318)
T ss_dssp ECEECCHHHHHHHHHHHHHHHCSH---HHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHhhCChH---HHHHHHHHHHHHHHHH
Confidence 012579999999998644332211 3788888888776543
No 60
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.61 E-value=9.9e-14 Score=148.02 Aligned_cols=193 Identities=19% Similarity=0.236 Sum_probs=133.4
Q ss_pred hhhhhhhhcCCCcccccHHHHHHHHHHHhc-----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 279 DLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 279 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
.|.+.+++..|+.++|++..++.+...+.. ....+++|+||||+||||+++.++..+ +..+....
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~s 83 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTS 83 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 457788999999999999988888776653 234789999999999999999999998 33333332
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC------------
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------ 421 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------ 421 (725)
...+.. + ..+..++.. .....|+||||+|.+.+ .+.+.|...++.
T Consensus 84 g~~~~~-----~---~~l~~~~~~--~~~~~v~~iDE~~~l~~-------------~~~e~L~~~~~~~~~~i~~~~~~~ 140 (334)
T 1in4_A 84 GPVLVK-----Q---GDMAAILTS--LERGDVLFIDEIHRLNK-------------AVEELLYSAIEDFQIDIMIGKGPS 140 (334)
T ss_dssp TTTCCS-----H---HHHHHHHHH--CCTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCCCC-------
T ss_pred chHhcC-----H---HHHHHHHHH--ccCCCEEEEcchhhcCH-------------HHHHHHHHHHHhcccceeeccCcc
Confidence 221111 1 112222222 12456999999999832 234444433322
Q ss_pred --------CCeEEEEeccchhhhhhhcccHHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 004878 422 --------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (725)
Q Consensus 422 --------~~v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~ 492 (725)
..+.++++++... .+++.+++||. .+.+++|+.+++.++|+..... .++.++++++..++..
T Consensus 141 ~~~i~~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 141 AKSIRIDIQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp --------CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHT
T ss_pred cccccccCCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHh
Confidence 1356777777765 78999999995 6789999999999999887763 4678999999999887
Q ss_pred hhhhcccCCCchhHHHHHHHHHHHHHH
Q 004878 493 SARYISDRYLPDKAIDLVDEAGSRAHI 519 (725)
Q Consensus 493 s~~~i~~r~lp~~ai~ll~~a~~~~~~ 519 (725)
+.+. |..+.++++.+...+..
T Consensus 212 ~~G~------~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 212 SRGT------PRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp STTC------HHHHHHHHHHHHHHHHH
T ss_pred cCCC------hHHHHHHHHHHHHHHHH
Confidence 6543 45777888777655543
No 61
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.61 E-value=2.3e-14 Score=148.99 Aligned_cols=204 Identities=22% Similarity=0.271 Sum_probs=135.0
Q ss_pred hcCCCcccccHHHHHHHHHHHhc------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 286 EELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
+-+|++++|.++.+..+.++... ..+.+++|+|||||||||++++++..+ ...++.++
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~~ 105 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 105 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEec
Confidence 45688999999888777665432 123458999999999999999999887 34566777
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC-CCCCcHHHHHHHhhhhcC----CCeEEEE
Q 004878 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLGR----GELQCIA 428 (725)
Q Consensus 354 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~~----~~v~vI~ 428 (725)
+..+.. ...+.....+..+++.+....+.++|+||++.+........+ .........+.+...+.. ..+++++
T Consensus 106 ~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 106 GSDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHH--STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEE
T ss_pred HHHHHH--HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 666542 234556667888888887667899999999988643221000 000112223333333332 2367778
Q ss_pred eccchhhhhhhcccHHHHc--cc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHhhhhcccCCCch
Q 004878 429 STTQDEHRTQFEKDKALAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~--Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~-l~~l~~~s~~~i~~r~lp~ 504 (725)
+++.++ .+|+++.+ || ..|.|+.|+.++|.+||+.+.. +..+++++ +..++..+.+|. +.
T Consensus 184 ~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~-----~~ 247 (278)
T 1iy2_A 184 ATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----GA 247 (278)
T ss_dssp EESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCC-----HH
T ss_pred ecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc------cCCCCcccCHHHHHHHcCCCC-----HH
Confidence 888876 68999998 78 4899999999999999986553 23343333 566666665553 24
Q ss_pred hHHHHHHHHHHHH
Q 004878 505 KAIDLVDEAGSRA 517 (725)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (725)
++..++.+++..+
T Consensus 248 dl~~l~~~a~~~a 260 (278)
T 1iy2_A 248 DLENLLNEAALLA 260 (278)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566777766544
No 62
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=1.7e-14 Score=154.39 Aligned_cols=195 Identities=18% Similarity=0.241 Sum_probs=145.3
Q ss_pred hhhhhhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh
Q 004878 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~ 356 (725)
..+|.++++|..|++++|+++.++.|...+......|++|+||+|+|||++++++++.+.... ....+..++...
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~ 86 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-----YSNMVLELNASD 86 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-----HHHHEEEECTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----ccceEEEEcCcc
Confidence 458999999999999999999999999999887777899999999999999999999985311 012344554432
Q ss_pred hhccccccchHHHHHHHHHHHHHh------cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEE
Q 004878 357 LMAGAKERGELEARVTTLISEIQK------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (725)
Q Consensus 357 l~~g~~~~g~~~~~l~~~~~~~~~------~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 428 (725)
. .+ ...++..+..+.. .+..|++|||+|.+ ..+.++.|+.+++. ....+|+
T Consensus 87 ~------~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~il 145 (340)
T 1sxj_C 87 D------RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-------------TNAAQNALRRVIERYTKNTRFCV 145 (340)
T ss_dssp C------CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-------------CHHHHHHHHHHHHHTTTTEEEEE
T ss_pred c------cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-------------CHHHHHHHHHHHhcCCCCeEEEE
Confidence 1 11 1223333333321 23689999999999 23567778888874 4567777
Q ss_pred eccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHH
Q 004878 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (725)
Q Consensus 429 at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ 508 (725)
++|... .+.+++.+||..+.+.+++.++..+++..++. ..++.+++++++.++.++.+.. .+++.
T Consensus 146 ~~n~~~-----~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~----~~~~~i~~~~~~~i~~~s~G~~------r~~~~ 210 (340)
T 1sxj_C 146 LANYAH-----KLTPALLSQCTRFRFQPLPQEAIERRIANVLV----HEKLKLSPNAEKALIELSNGDM------RRVLN 210 (340)
T ss_dssp EESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----TTTCCBCHHHHHHHHHHHTTCH------HHHHH
T ss_pred EecCcc-----ccchhHHhhceeEeccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH------HHHHH
Confidence 777654 67899999999999999999998888877765 3477899999999999887643 24555
Q ss_pred HHHH
Q 004878 509 LVDE 512 (725)
Q Consensus 509 ll~~ 512 (725)
+++.
T Consensus 211 ~l~~ 214 (340)
T 1sxj_C 211 VLQS 214 (340)
T ss_dssp HTTT
T ss_pred HHHH
Confidence 5543
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.59 E-value=4.3e-14 Score=142.84 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=133.1
Q ss_pred hhhhh-cCCCccccc---HHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh
Q 004878 282 ARASE-ELIDPVIGR---ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (725)
Q Consensus 282 ~~~~~-~~l~~liG~---~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l 357 (725)
..+++ ..|++++|. +..++.+..+.......+++|+||||||||++++.+++.+... +..++.+++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~~ 91 (242)
T 3bos_A 19 VHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGIH 91 (242)
T ss_dssp CCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGGG
T ss_pred CCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHH
Confidence 33444 577888863 4677778777776677899999999999999999999998543 566778887765
Q ss_pred hccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhh
Q 004878 358 MAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437 (725)
Q Consensus 358 ~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~ 437 (725)
..... ..+..+ ..+.+|||||++.+.... .....+...+....+.+.+.+|.+++... ..
T Consensus 92 ~~~~~----------~~~~~~--~~~~vliiDe~~~~~~~~-------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~-~~ 151 (242)
T 3bos_A 92 ASIST----------ALLEGL--EQFDLICIDDVDAVAGHP-------LWEEAIFDLYNRVAEQKRGSLIVSASASP-ME 151 (242)
T ss_dssp GGSCG----------GGGTTG--GGSSEEEEETGGGGTTCH-------HHHHHHHHHHHHHHHHCSCEEEEEESSCT-TT
T ss_pred HHHHH----------HHHHhc--cCCCEEEEeccccccCCH-------HHHHHHHHHHHHHHHcCCCeEEEEcCCCH-HH
Confidence 43211 111111 336799999999983210 00222344444445556553444444322 11
Q ss_pred hhcccHHHHccc---ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHH
Q 004878 438 QFEKDKALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (725)
Q Consensus 438 ~~~ld~~L~~Rf---~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~ 514 (725)
....++.+.+|| ..+.+++|+.+++.+++...+. ..++.+++++++.++..+.+.+ ..+..+++.++
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g~~------r~l~~~l~~~~ 221 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA----MRGLQLPEDVGRFLLNRMARDL------RTLFDVLDRLD 221 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH----HTTCCCCHHHHHHHHHHTTTCH------HHHHHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHccCCH------HHHHHHHHHHH
Confidence 223458999999 7899999999999999988776 3467899999999998776543 35666666665
Q ss_pred HHH
Q 004878 515 SRA 517 (725)
Q Consensus 515 ~~~ 517 (725)
..+
T Consensus 222 ~~a 224 (242)
T 3bos_A 222 KAS 224 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 64
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=3.8e-14 Score=150.63 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=129.5
Q ss_pred cCCCccc-c--cHHHHHHHHHHHhcC--CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc
Q 004878 287 ELIDPVI-G--RETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (725)
Q Consensus 287 ~~l~~li-G--~~~~i~~l~~~L~~~--~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~ 361 (725)
.+|++++ | +......+..++... ..++++|+||||||||++++++++.+... +.+++.+++..+...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~~- 79 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQA- 79 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHH-
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHH-
Confidence 3567776 4 344445555555543 35789999999999999999999988543 567788887765421
Q ss_pred cccchHHHH-HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhc
Q 004878 362 KERGELEAR-VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440 (725)
Q Consensus 362 ~~~g~~~~~-l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ 440 (725)
..+.+... ...+.... ..+.+|||||+|.+.+.. .....+...+....+.+..++|++++... ....
T Consensus 80 -~~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~-------~~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~ 147 (324)
T 1l8q_A 80 -MVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKE-------RTQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDG 147 (324)
T ss_dssp -HHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCH-------HHHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTT
T ss_pred -HHHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCCh-------HHHHHHHHHHHHHHHCCCeEEEEecCChH--HHHH
Confidence 11111110 11112212 236799999999994210 11234455555555666666666655443 2235
Q ss_pred ccHHHHccc---ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHH
Q 004878 441 KDKALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (725)
Q Consensus 441 ld~~L~~Rf---~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~ 516 (725)
++++|.+|| ..+.+++ +.+++..|++..+. ..++.+++++++.++..+ +.+ ..+..+++.++..
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~----~~~~~l~~~~l~~l~~~~-g~~------r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK----EFNLELRKEVIDYLLENT-KNV------REIEGKIKLIKLK 214 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH----HTTCCCCHHHHHHHHHHC-SSH------HHHHHHHHHHHHH
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhC-CCH------HHHHHHHHHHHHc
Confidence 789999999 5789999 99999999988776 347789999999999887 543 3455566555543
No 65
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.59 E-value=7.3e-14 Score=155.47 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=70.6
Q ss_pred HHHHHHHhhhhcCC--CeEEEEe---------ccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhcc
Q 004878 409 LDISNLLKPSLGRG--ELQCIAS---------TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (725)
Q Consensus 409 ~~~~~~L~~~l~~~--~v~vI~a---------t~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~ 477 (725)
.++++.|+..++.. .++++++ ++ .+.....+++.+++||..+.+++|+.++..++|+..+.. .
T Consensus 309 ~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~--~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~~~~~~----~ 382 (456)
T 2c9o_A 309 IECFTYLHRALESSIAPIVIFASNRGNCVIRGTE--DITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQT----E 382 (456)
T ss_dssp HHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTS--SCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHhhccCCCEEEEecCCccccccccc--cccccccCChhHHhhcceeeCCCCCHHHHHHHHHHHHHH----h
Confidence 35677777777753 3433344 32 011123688999999998999999999999999887763 3
Q ss_pred CCCCCHHHHHHHHHHh-hhhcccCCCchhHHHHHHHHHHHHH
Q 004878 478 NCKFTLEAINAAVHLS-ARYISDRYLPDKAIDLVDEAGSRAH 518 (725)
Q Consensus 478 ~~~i~~~~l~~l~~~s-~~~i~~r~lp~~ai~ll~~a~~~~~ 518 (725)
++.++++++..++.++ .+. +..++.+++.+...+.
T Consensus 383 ~~~~~~~~~~~i~~~a~~g~------~r~a~~ll~~a~~~A~ 418 (456)
T 2c9o_A 383 GINISEEALNHLGEIGTKTT------LRYSVQLLTPANLLAK 418 (456)
T ss_dssp TCCBCHHHHHHHHHHHHHSC------HHHHHHTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCC------HHHHHHHHHHHHHHHh
Confidence 5789999999999988 532 4678888887765543
No 66
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.56 E-value=2.1e-14 Score=148.66 Aligned_cols=180 Identities=15% Similarity=0.156 Sum_probs=122.4
Q ss_pred CCcccccHHHHHHHHH-------HHh---cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh
Q 004878 289 IDPVIGRETEIQRIIQ-------ILC---RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (725)
Q Consensus 289 l~~liG~~~~i~~l~~-------~L~---~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~ 358 (725)
.+.++|+++.++.+.. .+. .....++||+||||||||++|+++++.+ +..++.+++....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~ 101 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKM 101 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHh
Confidence 3467888777666555 332 3455689999999999999999999987 5667777776544
Q ss_pred ccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC-----CCeEEEEeccch
Q 004878 359 AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-----GELQCIASTTQD 433 (725)
Q Consensus 359 ~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-----~~v~vI~at~~~ 433 (725)
.|. ..+.....++.++..+....+.+|||||+|.+++....+ ......+.+.|...++. ..+++|++||..
T Consensus 102 ~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 102 IGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 177 (272)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred cCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh
Confidence 332 223344567778887776778999999999997653321 12345667777776652 346788888887
Q ss_pred hhhhhhcccH-HHHccc-ceEEecCCCH-HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 434 EHRTQFEKDK-ALARRF-QPVLISEPSQ-EDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 434 ~~~~~~~ld~-~L~~Rf-~~I~i~~Ps~-ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
+ .+++ .+.+|| ..|.+++++. ++...++. . ...++++.+..++..+.+|
T Consensus 178 ~-----~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~---~------~~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 178 D-----VLQEMEMLNAFSTTIHVPNIATGEQLLEALE---L------LGNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp H-----HHHHTTCTTTSSEEEECCCEEEHHHHHHHHH---H------HTCSCHHHHHHHHHHHTTS
T ss_pred h-----hcchhhhhcccceEEcCCCccHHHHHHHHHH---h------cCCCCHHHHHHHHHHhcCC
Confidence 6 3445 577898 4566655544 44333332 2 1257899999999988775
No 67
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.55 E-value=1.1e-14 Score=153.60 Aligned_cols=105 Identities=64% Similarity=1.070 Sum_probs=99.5
Q ss_pred HHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 615 ~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
++...+.++++.|.+.++||+++++.+...+...+.|+..|.+|...+||+||||||||++|++||+.++..+.+++.+|
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 45677889999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred ccCCcchhhHhHhhcCCCccccccc
Q 004878 695 MSEYMERHTVSKLIGSPPGYVGVGE 719 (725)
Q Consensus 695 ~sE~~~k~~vs~liG~ppgyvG~~e 719 (725)
++++.+.+..++++|.||||+|+.+
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~ 107 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEE 107 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTT
T ss_pred cccccccccHHHhcCCCCccccccc
Confidence 9999999999999999999999986
No 68
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=5.7e-14 Score=155.32 Aligned_cols=205 Identities=17% Similarity=0.192 Sum_probs=131.3
Q ss_pred CCCccc-ccH--HHHHHHHHHHhcCC-CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccc
Q 004878 288 LIDPVI-GRE--TEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (725)
Q Consensus 288 ~l~~li-G~~--~~i~~l~~~L~~~~-~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~ 363 (725)
+|++++ |.. .....+..+..... .++++|+||||+|||++++++++.+... ..+..++.+++..+... .
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-----~~~~~v~~v~~~~~~~~--~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-----EPDLRVMYITSEKFLND--L 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-----CCSSCEEEEEHHHHHHH--H
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHHHH--H
Confidence 566766 543 33444454444433 6789999999999999999999988542 12567788887665321 1
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccH
Q 004878 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443 (725)
Q Consensus 364 ~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~ 443 (725)
.+.+.......+.......+.||||||+|.+.+.. .....+...+....+.+..++|++.+... ....+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-------~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~ 246 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-------GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQD 246 (440)
T ss_dssp HHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-------HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCH
T ss_pred HHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-------HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHH
Confidence 11110000001111112257799999999994210 01234455555556666666666555433 2234789
Q ss_pred HHHccc---ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHH
Q 004878 444 ALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (725)
Q Consensus 444 ~L~~Rf---~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~~ 518 (725)
.|.+|| ..+.+++|+.+++..||+..+.. .++.++++++..++..+.+.+ ..+..+++.++..+.
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~----~~~~i~~e~l~~la~~~~gn~------R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEI----EHGELPEEVLNFVAENVDDNL------RRLRGAIIKLLVYKE 314 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHCCSCH------HHHHHHHHHHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHHHHHHH
Confidence 999999 58999999999999999887763 467899999999988775443 366677777666554
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.55 E-value=4.9e-14 Score=145.31 Aligned_cols=186 Identities=17% Similarity=0.211 Sum_probs=113.6
Q ss_pred cCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc---
Q 004878 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA--- 361 (725)
Q Consensus 287 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~--- 361 (725)
.+|+.++|+++.++++.+.+.. ....+++|+||||||||++|++++..+... +.+++.++|..+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~ 75 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDS 75 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHH
Confidence 3578899999999988876654 456789999999999999999999876332 4567888887652100
Q ss_pred ----cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------Ce
Q 004878 362 ----KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (725)
Q Consensus 362 ----~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v 424 (725)
...+.+..........+....+.+|||||++.+ ..+.++.|..+++.+ .+
T Consensus 76 ~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 76 ELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA-------------PMMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHHCCC---------CCCCHHHHTTTSEEEEESGGGS-------------CHHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred HhcCCcccccccccccccchhhhcCCcEEEEechHhc-------------CHHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 001111100000000111234579999999999 335677777777643 57
Q ss_pred EEEEeccchhhh--hhhcccHHHHcccceEEecCCCH----HHHHHHHHHHHHHHHhccCC----CCCHHHHHHHHHH
Q 004878 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHNC----KFTLEAINAAVHL 492 (725)
Q Consensus 425 ~vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~----ee~~~IL~~~~~~~~~~~~~----~i~~~~l~~l~~~ 492 (725)
.+|++||.+... ..-.+.+.|.+||..+.+..|+. ++...+++.++.++....+. .+++++++.+...
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~ 220 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY 220 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC
Confidence 899999875311 11246789999997666666554 44555555555554433333 6899998887653
No 70
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.54 E-value=6e-14 Score=152.36 Aligned_cols=212 Identities=18% Similarity=0.194 Sum_probs=141.4
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc-----
Q 004878 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG----- 360 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g----- 360 (725)
+.++|++++++.+..++.. ....+++|+||||||||++++.+++.+..... ....+..++.+++......
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECCcCCCHHHHHH
Confidence 6899999999999998854 45678999999999999999999998743200 0001456777776542110
Q ss_pred ---------ccccch-HHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----CCCeE
Q 004878 361 ---------AKERGE-LEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQ 425 (725)
Q Consensus 361 ---------~~~~g~-~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~ 425 (725)
....+. ....+..+...+... .+.+|||||+|.+.... ...+....+....+ ...+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGCC-----CE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhhcCCCceEE
Confidence 001111 233344444444433 47899999999995321 02334444444443 56789
Q ss_pred EEEeccchhhhhhhcccHHHHccc--ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCc
Q 004878 426 CIASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (725)
Q Consensus 426 vI~at~~~~~~~~~~ld~~L~~Rf--~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp 503 (725)
+|++++..++.. .+++.+.+|| ..+.+++|+.+++..+++..+... ..+..+++++++.++..+.+. ...+
T Consensus 170 ~I~~t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~ 242 (387)
T 2v1u_A 170 LVGITNSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAARE---HGDA 242 (387)
T ss_dssp EEEECSCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSS---SCCH
T ss_pred EEEEECCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---ccCH
Confidence 999998875322 5689999999 579999999999999998877632 235678899999999888722 1124
Q ss_pred hhHHHHHHHHHHHH
Q 004878 504 DKAIDLVDEAGSRA 517 (725)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (725)
..+++++..+...+
T Consensus 243 r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 243 RRALDLLRVAGEIA 256 (387)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56778887776544
No 71
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.54 E-value=1.1e-13 Score=145.82 Aligned_cols=181 Identities=20% Similarity=0.261 Sum_probs=127.5
Q ss_pred cccccHHHHHHHHHHHhcC---------CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc
Q 004878 291 PVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~~---------~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~ 361 (725)
.++|++..++.+...+.+. ...+++|+||||||||++|+++++.+... +..++.+++..+....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKH 90 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTT
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccc
Confidence 6889999999998887663 12478999999999999999999988542 4456777776543210
Q ss_pred c----------ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC---------
Q 004878 362 K----------ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (725)
Q Consensus 362 ~----------~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------- 422 (725)
. +.+... ...+...+....+.||||||++.+ ..++++.|+.+++.+
T Consensus 91 ~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~le~~~~~~~~~~~ 155 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKA-------------HPDVFNILLQMLDDGRLTDSHGRT 155 (311)
T ss_dssp HHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEECTTSCE
T ss_pred cHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhc-------------CHHHHHHHHHHHhcCEEEcCCCCE
Confidence 0 000000 012233344456789999999998 446788888887643
Q ss_pred ----CeEEEEeccch---------------hhhh------hhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhc
Q 004878 423 ----ELQCIASTTQD---------------EHRT------QFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAH 476 (725)
Q Consensus 423 ----~v~vI~at~~~---------------~~~~------~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~ 476 (725)
++++|++||.. +... ...++++|.+|| ..+.+.+|+.+++..|++.++.++...
T Consensus 156 ~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~ 235 (311)
T 4fcw_A 156 VDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRAR 235 (311)
T ss_dssp EECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred EECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 45689998872 1111 125789999999 578899999999999999877765432
Q ss_pred -----cCCCCCHHHHHHHHHHh
Q 004878 477 -----HNCKFTLEAINAAVHLS 493 (725)
Q Consensus 477 -----~~~~i~~~~l~~l~~~s 493 (725)
..+.+++++++.++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~ 257 (311)
T 4fcw_A 236 LAEKRISLELTEAAKDFLAERG 257 (311)
T ss_dssp HHTTTCEEEECHHHHHHHHHHS
T ss_pred HHhCCcEEEeCHHHHHHHHHhC
Confidence 24678999999988754
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=2.9e-13 Score=147.09 Aligned_cols=209 Identities=19% Similarity=0.168 Sum_probs=139.5
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccC-CCeEEEeehhhhh-c----
Q 004878 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL-SKRIMSLDMGLLM-A---- 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~-~~~l~~ld~~~l~-~---- 359 (725)
++++|++++++.+...+.. ....+++|+||+|||||++++.+++.+.......... +..++.+++.... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999887755 3456799999999999999999999875420000001 5677888876532 0
Q ss_pred ---------cc--cccc-hHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHH-HHHHhhhhcCCCeEE
Q 004878 360 ---------GA--KERG-ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI-SNLLKPSLGRGELQC 426 (725)
Q Consensus 360 ---------g~--~~~g-~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~-~~~L~~~l~~~~v~v 426 (725)
+. ...+ .....+..+...+...+ .||||||+|.+.... ..++ ...|.... ..+.+
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~---------~~~~~l~~l~~~~--~~~~i 167 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR---------GGDIVLYQLLRSD--ANISV 167 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST---------TSHHHHHHHHTSS--SCEEE
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC---------CCceeHHHHhcCC--cceEE
Confidence 00 0011 11233444444443333 399999999996431 1233 44444433 77899
Q ss_pred EEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchh
Q 004878 427 IASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ 505 (725)
|++++..++. ..+++.+.+|| ..+.|++|+.++..+++...+.. ...+..+++++++.+++.+.++.. -+..
T Consensus 168 I~~t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~G---~~r~ 240 (384)
T 2qby_B 168 IMISNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAISAKEHG---DARK 240 (384)
T ss_dssp EEECSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHHHHTTCC---CHHH
T ss_pred EEEECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHHHHhccC---CHHH
Confidence 9999876432 25689999998 68999999999999999887752 123467899999999998873211 1346
Q ss_pred HHHHHHHHHHHH
Q 004878 506 AIDLVDEAGSRA 517 (725)
Q Consensus 506 ai~ll~~a~~~~ 517 (725)
+++++..+...+
T Consensus 241 a~~~l~~a~~~a 252 (384)
T 2qby_B 241 AVNLLFRAAQLA 252 (384)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 777877776544
No 73
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.53 E-value=8.7e-14 Score=150.34 Aligned_cols=192 Identities=23% Similarity=0.274 Sum_probs=127.0
Q ss_pred cccccHHHHHHHHHHHhc---------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 291 PVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~---------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
.++|+++.++.+...+.. ....++||+||||||||++|+++|+.+ +.+++.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~ 85 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADAT 85 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechH
Confidence 379999999998887731 145789999999999999999999988 6778899988
Q ss_pred hhhccccccchH-HHHHHHHHHHH----HhcCCeEEEEccchhhhhCCCCCCCCC-CCcHHHHHHHhhhhcCC-------
Q 004878 356 LLMAGAKERGEL-EARVTTLISEI----QKSGDVILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSLGRG------- 422 (725)
Q Consensus 356 ~l~~g~~~~g~~-~~~l~~~~~~~----~~~~~~IL~IDEid~l~~~~~~~~~~~-~~~~~~~~~L~~~l~~~------- 422 (725)
.+... .+.|.. ...+..++..+ ....++||||||+|.+.........+. .....+++.|+.+++..
T Consensus 86 ~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~ 164 (363)
T 3hws_A 86 TLTEA-GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164 (363)
T ss_dssp HHTTC-HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-------
T ss_pred Hhccc-ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCc
Confidence 76532 123322 34455555443 333467999999999975432211000 01122788888888721
Q ss_pred ----------------CeEEEEeccchhhhhh----------------------------------------hcccHHHH
Q 004878 423 ----------------ELQCIASTTQDEHRTQ----------------------------------------FEKDKALA 446 (725)
Q Consensus 423 ----------------~v~vI~at~~~~~~~~----------------------------------------~~ld~~L~ 446 (725)
++++|++++...+... ..+.|.|.
T Consensus 165 ~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~ 244 (363)
T 3hws_A 165 GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFI 244 (363)
T ss_dssp ---------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHH
T ss_pred cccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHh
Confidence 1234444443211110 11689999
Q ss_pred cccc-eEEecCCCHHHHHHHHHH----HHHHHHh-----ccCCCCCHHHHHHHHHHh
Q 004878 447 RRFQ-PVLISEPSQEDAVRILLG----LREKYEA-----HHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 447 ~Rf~-~I~i~~Ps~ee~~~IL~~----~~~~~~~-----~~~~~i~~~~l~~l~~~s 493 (725)
+||. .+.+.+|+.+++.+|+.. +..++.. ...+.+++++++.+++.+
T Consensus 245 ~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 245 GRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred cccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhh
Confidence 9996 556889999999999886 5555432 223568999999998764
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=4.2e-13 Score=145.49 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=141.5
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc------
Q 004878 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~------ 359 (725)
++++||+++++.+.+.+.. ....+++|+||+|+|||++++.+++.+...... +..++.+++.....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEECCCCCCHHHHHH
Confidence 6799999999999998774 456789999999999999999999987532100 45677777653210
Q ss_pred ------cc--cccc-hHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhh---cCCCeEE
Q 004878 360 ------GA--KERG-ELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---GRGELQC 426 (725)
Q Consensus 360 ------g~--~~~g-~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l---~~~~v~v 426 (725)
+. ...+ .....+..+.+.+... .+.||+|||++.+..... .+....|...+ ....+.+
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~~~~~~~~~ 166 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSEVNKSKISF 166 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHSCCC--EEE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhhcCCCeEEE
Confidence 00 0111 1333344555555444 388999999999965321 23444454445 4567888
Q ss_pred EEeccchhhhhhhcccHHHHccc--ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCch
Q 004878 427 IASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (725)
Q Consensus 427 I~at~~~~~~~~~~ld~~L~~Rf--~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~ 504 (725)
|++++..++.. .+++.+.+|| ..+.+++++.++..+++...+... .....+++++++.++..+... ...+.
T Consensus 167 I~~~~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r 239 (386)
T 2qby_A 167 IGITNDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAARE---HGDAR 239 (386)
T ss_dssp EEEESCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHT---TCCHH
T ss_pred EEEECCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---cCCHH
Confidence 99888765322 4678888999 589999999999999998876532 234678999999999888621 12245
Q ss_pred hHHHHHHHHHHHH
Q 004878 505 KAIDLVDEAGSRA 517 (725)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (725)
.+++++..++..+
T Consensus 240 ~~~~ll~~a~~~a 252 (386)
T 2qby_A 240 RALDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6778887776544
No 75
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.53 E-value=2.6e-13 Score=147.28 Aligned_cols=193 Identities=25% Similarity=0.300 Sum_probs=123.7
Q ss_pred cccccHHHHHHHHHHHh----c--------------------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCC
Q 004878 291 PVIGRETEIQRIIQILC----R--------------------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~----~--------------------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~ 340 (725)
.++|+++.++.|...+. + ....++||+||||||||++|+++++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 58999999998887762 1 245789999999999999999999987
Q ss_pred CcccCCCeEEEeehhhhhccccccc-hHHHHHHHHHHH----HHhcCCeEEEEccchhhhhCCCCCC-CCCCCcHHHHHH
Q 004878 341 PVFLLSKRIMSLDMGLLMAGAKERG-ELEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGR-GNKGTGLDISNL 414 (725)
Q Consensus 341 p~~l~~~~l~~ld~~~l~~g~~~~g-~~~~~l~~~~~~----~~~~~~~IL~IDEid~l~~~~~~~~-~~~~~~~~~~~~ 414 (725)
+.+++.+++..+... .+.| ..+..+..++.. +....+.||||||++.+...+.... ........+++.
T Consensus 97 -----~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 97 -----DIPIAISDATSLTEA-GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred -----CCCEEEecchhhhhc-CcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 567788888765421 1122 122334444432 2234578999999999965421100 000112347888
Q ss_pred HhhhhcCC-----------------------CeEEEEeccchhhhh----------------------------------
Q 004878 415 LKPSLGRG-----------------------ELQCIASTTQDEHRT---------------------------------- 437 (725)
Q Consensus 415 L~~~l~~~-----------------------~v~vI~at~~~~~~~---------------------------------- 437 (725)
|+.+++.+ ++.+|+++|......
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 88888743 346777765321100
Q ss_pred --hhcccHHHHccc-ceEEecCCCHHHHHHHHH----HHHHHHHh-----ccCCCCCHHHHHHHHHHhh
Q 004878 438 --QFEKDKALARRF-QPVLISEPSQEDAVRILL----GLREKYEA-----HHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 438 --~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~----~~~~~~~~-----~~~~~i~~~~l~~l~~~s~ 494 (725)
...+.|.|.+|| ..+.|++++.++...|+. .+..++.. ..++.+++++++.++..+.
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 319 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLAL 319 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhc
Confidence 224679999999 688999999999999997 34443322 2246789999999988754
No 76
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.51 E-value=2.9e-13 Score=145.12 Aligned_cols=209 Identities=20% Similarity=0.230 Sum_probs=122.1
Q ss_pred hcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhc----CCCcccC----------------
Q 004878 286 EELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EVPVFLL---------------- 345 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~----~~p~~l~---------------- 345 (725)
+..|++++|+++.++.+...+......++||+||||||||++|+++++.+... ..+....
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNV 99 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCE
T ss_pred CCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhcccc
Confidence 45678899999977765555544456789999999999999999999987421 0111000
Q ss_pred ---CCeEEEeehhhhhccccccchHHHHHHHHHHH---------HHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHH
Q 004878 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISE---------IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (725)
Q Consensus 346 ---~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~---------~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (725)
...++.+....... ...|.. .+...+.. .....+.+|||||++.+ ..+.++
T Consensus 100 ~~~~~~~~~~~~~~~~~--~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l-------------~~~~~~ 162 (350)
T 1g8p_A 100 IRKPTPVVDLPLGVSED--RVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLL-------------EDHIVD 162 (350)
T ss_dssp EEECCCEEEECTTCCHH--HHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-------------CHHHHH
T ss_pred ccCCCcccccCCCcchh--hheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhC-------------CHHHHH
Confidence 00111111100000 000000 00111111 01123679999999999 345677
Q ss_pred HHhhhhcCC---------------CeEEEEeccchhhhhhhcccHHHHcccce-EEecCC-CHHHHHHHHHHHHHH----
Q 004878 414 LLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQP-VLISEP-SQEDAVRILLGLREK---- 472 (725)
Q Consensus 414 ~L~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~~L~~Rf~~-I~i~~P-s~ee~~~IL~~~~~~---- 472 (725)
.|+..++.+ .+++|+++|+.+ ..++++|.+||.. +.+++| +.+++..|++.....
T Consensus 163 ~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~ 238 (350)
T 1g8p_A 163 LLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADP 238 (350)
T ss_dssp HHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCc
Confidence 777777653 688999998743 2588999999964 999999 566777888663211
Q ss_pred ---------------------HHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHH
Q 004878 473 ---------------------YEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 473 ---------------------~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
.....++.+++++++.++..+.+.-. .-+..+..+++.+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~--~~~R~~~~ll~~a~~~A 302 (350)
T 1g8p_A 239 KAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS--DGLRGELTLLRSARALA 302 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS--CSHHHHHHHHHHHHHHH
T ss_pred hhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC--CCccHHHHHHHHHHHHH
Confidence 01123456777777777776654211 01234455555444433
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.50 E-value=4.9e-14 Score=159.84 Aligned_cols=180 Identities=19% Similarity=0.244 Sum_probs=117.6
Q ss_pred CcccccHHHHHHHHHHHhc------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc--
Q 004878 290 DPVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-- 361 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~-- 361 (725)
++++|.++...++.+.+.. ..+.+++|+||||||||+++++++..+ +..+..+++..+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEI 150 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC-------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhh
Confidence 3589999988887665432 235578999999999999999999998 4555666654432111
Q ss_pred -----cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC---------------
Q 004878 362 -----KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------- 421 (725)
Q Consensus 362 -----~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--------------- 421 (725)
.+.|.....+...+..+... +.||||||+|.+.... ..+.++.|+..++.
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~-~~vl~lDEid~l~~~~---------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKL-NPVFLLDEIDKMSSDF---------RGDPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp -------------CHHHHHHTTCSS-SEEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhcc-CCEEEEhhhhhhhhhh---------ccCHHHHHHHHHhhhhcceeecccCCeee
Confidence 22333334444455544333 3499999999995321 12245566666642
Q ss_pred --CCeEEEEeccchhhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHH-HHHHhcc-----CCCCCHHHHHHHHHHh
Q 004878 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHH-----NCKFTLEAINAAVHLS 493 (725)
Q Consensus 422 --~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~-~~~~~~~-----~~~i~~~~l~~l~~~s 493 (725)
..+++|+|||... .++++|++||..|.|+.|+.+++..|++..+ .++...+ ++.++++++..++...
T Consensus 221 ~~~~v~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 221 DLSKVLFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp BCSSCEEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred cccceEEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 4578999999876 7899999999999999999999999998754 3322222 4568999998887744
Q ss_pred h
Q 004878 494 A 494 (725)
Q Consensus 494 ~ 494 (725)
.
T Consensus 296 ~ 296 (543)
T 3m6a_A 296 T 296 (543)
T ss_dssp C
T ss_pred C
Confidence 3
No 78
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=1.1e-12 Score=142.71 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=139.5
Q ss_pred CcccccHHHHHHHHHHHhc----CCCC--CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc----
Q 004878 290 DPVIGRETEIQRIIQILCR----RTKN--NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---- 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~----~~~~--~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~---- 359 (725)
++++||+++++++...+.. ..+. +++|+||+|+|||++++.++..+.... +..++.+++.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHH
Confidence 6799999999999998876 3334 799999999999999999999884321 35677777543221
Q ss_pred --------cc--cccc-hHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC------
Q 004878 360 --------GA--KERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------ 421 (725)
Q Consensus 360 --------g~--~~~g-~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------ 421 (725)
+. ...+ .....+..+...+.. .++.||+|||+|.+ ..+..+.|..+++.
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-------------~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-------------APDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-------------CHHHHHHHHHHTTCHHHHSS
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-------------chHHHHHHHHHHHhCCCCCc
Confidence 00 0011 122223333333333 45789999999999 23456666666642
Q ss_pred CCeEEEEeccchhhhhhhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcc-
Q 004878 422 GELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS- 498 (725)
Q Consensus 422 ~~v~vI~at~~~~~~~~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~- 498 (725)
..+.+|++++..++.. .+++.+.+||. .+.+++++.++..+++...+... .....+++++++.++..+.+...
T Consensus 158 ~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG--LAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp CCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH--BCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCEEEEEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhhcccC
Confidence 5788888888765333 46788999985 69999999999999998877643 22347899999999998843210
Q ss_pred --cCCCchhHHHHHHHHHHHH
Q 004878 499 --DRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 499 --~r~lp~~ai~ll~~a~~~~ 517 (725)
....+..+++++..++..+
T Consensus 234 ~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 234 DTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp CTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 0123456788887776554
No 79
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.49 E-value=2.4e-15 Score=178.03 Aligned_cols=169 Identities=20% Similarity=0.308 Sum_probs=128.8
Q ss_pred hcCCCcccccHHHHHHHHHHHhc-------------CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEe
Q 004878 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~l 352 (725)
.-.+++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.+
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v 542 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 542 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCC
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 34678899999999888887642 345679999999999999999999998 4456667
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCCcHHHHHHHhhhhc----CCCeEEE
Q 004878 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCI 427 (725)
Q Consensus 353 d~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l~----~~~v~vI 427 (725)
++..+. ..+.|+.+..++.+|+.+....++||||||||.+........+. ......+.+.|+..+. ...++||
T Consensus 543 ~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI 620 (806)
T 1ypw_A 543 KGPELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp CCSSST--TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred echHhh--hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEE
Confidence 776665 34667778889999999988889999999999997654321100 0012334555555553 4568999
Q ss_pred EeccchhhhhhhcccHHHHc--ccc-eEEecCCCHHHHHHHHHHHHH
Q 004878 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (725)
Q Consensus 428 ~at~~~~~~~~~~ld~~L~~--Rf~-~I~i~~Ps~ee~~~IL~~~~~ 471 (725)
+|||..+ .+|+++.+ ||. .|.++.|+.+++..||+..+.
T Consensus 621 ~tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 621 GATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred EecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 9999887 68999999 995 899999999999999987654
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.48 E-value=6.7e-14 Score=147.17 Aligned_cols=179 Identities=21% Similarity=0.321 Sum_probs=118.9
Q ss_pred CcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc--------
Q 004878 290 DPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------- 359 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-------- 359 (725)
++++|+++.++++.+.+.+ ....++||+||||||||++|++++...... +.+++.++|..+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-------~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS-------DRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-------SSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc-------CCCeEEEeCCCCChHHHHHHhc
Confidence 3689999999999888766 567889999999999999999999876432 44566777655421
Q ss_pred cccccchHHHH---HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------C
Q 004878 360 GAKERGELEAR---VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------E 423 (725)
Q Consensus 360 g~~~~g~~~~~---l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~ 423 (725)
|. ..|.+... ....++. ..+.+||||||+.+ ..+.+..|+.+++.+ .
T Consensus 75 g~-~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 75 GH-EKGAFTGADKRREGRFVE---ADGGTLFLDEIGDI-------------SPLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp CC-CSSCCC---CCCCCHHHH---HTTSEEEEESCTTC-------------CHHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred Cc-cccccCchhhhhcCHHHh---cCCCEEEEeccccC-------------CHHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 10 01111110 1122222 23569999999999 345677777777754 3
Q ss_pred eEEEEeccchhhh--hhhcccHHHHcccceEEecCCC----HHHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHHH
Q 004878 424 LQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPS----QEDAVRILLGLREKYEAHH---NCKFTLEAINAAVHL 492 (725)
Q Consensus 424 v~vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps----~ee~~~IL~~~~~~~~~~~---~~~i~~~~l~~l~~~ 492 (725)
+.+|++||.+... ..-.+++.|..||..+.+..|+ .++...+++.++.++.... ...+++++++.+..+
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 7899999876321 1123578899999766666665 3555666666666554333 257899999888764
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.47 E-value=3.5e-12 Score=164.73 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=97.5
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----------
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ---------- 379 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~---------- 379 (725)
.+.++||+||||||||++|+.+.... .+..++.++++..... ..+...++..-
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~ 1328 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLT 1328 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCcc
Confidence 35689999999999999997665432 1456677776554321 12333333320
Q ss_pred -----hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--------------CeEEEEeccchhhhhhhc
Q 004878 380 -----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------------ELQCIASTTQDEHRTQFE 440 (725)
Q Consensus 380 -----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~at~~~~~~~~~~ 440 (725)
.+.+.||||||++..... +.+.+....+|+++++.+ ++.+|+|||++.......
T Consensus 1329 ~~P~~~gk~~VlFiDEinmp~~d-------~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~ 1401 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEINLPKLD-------KYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401 (2695)
T ss_dssp EEEBSSSSCEEEEEETTTCSCCC-------SSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCC
T ss_pred ccCCCCCceEEEEeccccccccc-------ccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCcc
Confidence 123479999999864211 123445677888887743 368999999874233457
Q ss_pred ccHHHHcccceEEecCCCHHHHHHHHHHHHHHH
Q 004878 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (725)
Q Consensus 441 ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~ 473 (725)
++++|.|||..+.++.|+.+++..|+..+...+
T Consensus 1402 l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1402 MSERFTRHAAILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHH
T ss_pred CChhhhheeeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999887654
No 82
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.45 E-value=1e-12 Score=143.30 Aligned_cols=105 Identities=26% Similarity=0.315 Sum_probs=73.4
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC------------CCeEEEEec-----cchhhhhhhcccHHH
Q 004878 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIAST-----TQDEHRTQFEKDKAL 445 (725)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------~~v~vI~at-----~~~~~~~~~~ld~~L 445 (725)
..||++||||.+...+....+ +-+...+++.|+++++. .++.+|++. ++. .+.|.|
T Consensus 251 ~~il~~DEidki~~~~~~~~~-D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~------dlipel 323 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS------DLIPEL 323 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG------GSCHHH
T ss_pred CCeeeHHHHHHHhhccCCCCC-CchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh------hcchHH
Confidence 458999999999754321111 01122367788888874 457788886 433 355999
Q ss_pred Hcccc-eEEecCCCHHHHHHHHH----HHHHHHHh-----ccCCCCCHHHHHHHHHHhh
Q 004878 446 ARRFQ-PVLISEPSQEDAVRILL----GLREKYEA-----HHNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 446 ~~Rf~-~I~i~~Ps~ee~~~IL~----~~~~~~~~-----~~~~~i~~~~l~~l~~~s~ 494 (725)
.+||. .|.++.++.++..+|+. .+.++|.. ...+.++++++..+++.+.
T Consensus 324 ~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~ 382 (444)
T 1g41_A 324 QGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 382 (444)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred hcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHH
Confidence 99996 48999999999999994 35555532 2345799999999998754
No 83
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.1e-13 Score=148.28 Aligned_cols=74 Identities=27% Similarity=0.568 Sum_probs=60.5
Q ss_pred eeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
|+|++++++.|.+.+ .+.+.|+..|+ |+|||||||||||++|+|||+++ +.+|+.+++|++.++
T Consensus 150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~pr----GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk- 221 (405)
T 4b4t_J 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK----GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQK- 221 (405)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCC----CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCS-
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhcc-
Confidence 445555555444433 44667888775 99999999999999999999998 789999999999988
Q ss_pred hHhHhhcCCCccccccccccc
Q 004878 703 TVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 703 ~vs~liG~ppgyvG~~e~~~~ 723 (725)
|||.+|+.+|
T Consensus 222 -----------~vGese~~vr 231 (405)
T 4b4t_J 222 -----------YIGEGSRMVR 231 (405)
T ss_dssp -----------STTHHHHHHH
T ss_pred -----------ccchHHHHHH
Confidence 9999999887
No 84
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.36 E-value=8.5e-13 Score=122.94 Aligned_cols=135 Identities=16% Similarity=0.046 Sum_probs=91.9
Q ss_pred cccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHH
Q 004878 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~ 368 (725)
+++|+++.++++.+.+.+ ....+++|+||||||||++|++++...... +..++ +++..+.... .
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~~----~-- 67 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNAP----Q-- 67 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTSS----C--
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcch----h--
Confidence 579999999999987765 566789999999999999999999865332 44566 8877655321 1
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccchhhh--hhhcccHH
Q 004878 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHR--TQFEKDKA 444 (725)
Q Consensus 369 ~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~~~~~--~~~~ld~~ 444 (725)
....++.+ .+.+|||||+|.+ ..+.+..|..++.. ..+.+|++||.+... ..-.+++.
T Consensus 68 --~~~~~~~a---~~g~l~ldei~~l-------------~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~ 129 (145)
T 3n70_A 68 --LNDFIALA---QGGTLVLSHPEHL-------------TREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAE 129 (145)
T ss_dssp --HHHHHHHH---TTSCEEEECGGGS-------------CHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHH
T ss_pred --hhcHHHHc---CCcEEEEcChHHC-------------CHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHH
Confidence 23334333 3568999999999 34566667666653 457889988875421 12245677
Q ss_pred HHcccceEEecCC
Q 004878 445 LARRFQPVLISEP 457 (725)
Q Consensus 445 L~~Rf~~I~i~~P 457 (725)
|..|+..+.+..|
T Consensus 130 L~~rl~~~~i~lP 142 (145)
T 3n70_A 130 LYYCFAMTQIACL 142 (145)
T ss_dssp HHHHHHHHEEECC
T ss_pred HHHHhcCCEEeCC
Confidence 8888854444444
No 85
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.36 E-value=4.2e-12 Score=152.05 Aligned_cols=183 Identities=20% Similarity=0.257 Sum_probs=129.7
Q ss_pred CcccccHHHHHHHHHHHhcCC---------CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc
Q 004878 290 DPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~~---------~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g 360 (725)
+.++|+++.++.+...+.+.. ..++||+||||||||++|++++..+... +..++.++|+.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-------~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-------GGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhccch
Confidence 468999999999988876521 1478999999999999999999998542 456778888765421
Q ss_pred cc----------ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--------
Q 004878 361 AK----------ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (725)
Q Consensus 361 ~~----------~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------- 422 (725)
.. +.|.-+ ...+...+...++.||||||++.+ ..++++.|+++++.+
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~g~ 695 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-------------HPDVFNILLQILDDGRLTDSHGR 695 (854)
T ss_dssp GGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-------------CHHHHHHHHHHHTTTEECCSSSC
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-------------CHHHHHHHHHHhccCceECCCCC
Confidence 00 111100 122333444566789999999988 567899999999865
Q ss_pred -----CeEEEEeccchh---------------hhhh------hcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHh
Q 004878 423 -----ELQCIASTTQDE---------------HRTQ------FEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEA 475 (725)
Q Consensus 423 -----~v~vI~at~~~~---------------~~~~------~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~ 475 (725)
++++|+|||... .... ..+.|.|.+|| ..+.+.+|+.+++..|++.++.++..
T Consensus 696 ~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 696 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 456999998621 1111 13568899999 57788889999999999887776533
Q ss_pred c-----cCCCCCHHHHHHHHHHhh
Q 004878 476 H-----HNCKFTLEAINAAVHLSA 494 (725)
Q Consensus 476 ~-----~~~~i~~~~l~~l~~~s~ 494 (725)
. ..+.+++++++.++..+.
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHC
T ss_pred HHHhCCceEEECHHHHHHHHHcCC
Confidence 2 235789999999988654
No 86
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.36 E-value=6.5e-12 Score=133.89 Aligned_cols=170 Identities=16% Similarity=0.167 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHhcCCCCC-ceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------cCCCeEEEeehhhhhc
Q 004878 295 RETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--------------LLSKRIMSLDMGLLMA 359 (725)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~-iLL~Gp~G~GKT~la~~la~~l~~~~~p~~--------------l~~~~l~~ld~~~l~~ 359 (725)
+++.++.+...+...+..+ +||+||+|+|||++|+.+++.+........ .....++.++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~--- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK--- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---
Confidence 4567778888887766655 899999999999999999999854321100 0012234443221
Q ss_pred cccccchHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccch
Q 004878 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (725)
Q Consensus 360 g~~~~g~~~~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~ 433 (725)
+.... -...++.+++.+.. ++..|++|||+|.+ ..+.+|.|+..++.. .+++|.+|+..
T Consensus 84 ~~~~~--~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-------------~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 84 GKNTL--GVDAVREVTEKLNEHARLGGAKVVWVTDAALL-------------TDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp TCSSB--CHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-------------CHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred cCCCC--CHHHHHHHHHHHhhccccCCcEEEEECchhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 00111 12335666666543 34689999999999 345778888889864 57788777776
Q ss_pred hhhhhhcccHHHHcccceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh
Q 004878 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 434 ~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~ 496 (725)
+ .+.+++++||+.+.|++|+.++..++|.... .++++++..++..+.+.
T Consensus 149 ~-----~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 149 E-----RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGS 197 (334)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTC
T ss_pred H-----hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCC
Confidence 5 6889999999999999999999888775432 57889999998887764
No 87
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=4.2e-13 Score=144.19 Aligned_cols=74 Identities=32% Similarity=0.565 Sum_probs=61.4
Q ss_pred eeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
|+|++++++.|.+.+ .+.+.|+..|+ |+|||||||||||++|+|||+++ +.+|+.++++++.++
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~pr----GvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~sk- 255 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPK----GVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQK- 255 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCS----EEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCCS-
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----CCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhhc-
Confidence 455666666555544 34567887774 99999999999999999999998 789999999999988
Q ss_pred hHhHhhcCCCccccccccccc
Q 004878 703 TVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 703 ~vs~liG~ppgyvG~~e~~~~ 723 (725)
|||.+|+.+|
T Consensus 256 -----------~vGesek~ir 265 (437)
T 4b4t_I 256 -----------YLGDGPRLCR 265 (437)
T ss_dssp -----------SSSHHHHHHH
T ss_pred -----------cCchHHHHHH
Confidence 9999998887
No 88
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=4.3e-13 Score=145.49 Aligned_cols=74 Identities=30% Similarity=0.570 Sum_probs=61.1
Q ss_pred eeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
|+|++++++.|.+.+ .+.+.|+..|+ |+|||||||||||++|+|||+++ +.+|+.+++++++++
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~ppr----GILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~sk- 282 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPK----GILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQK- 282 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCS----EEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCCC-
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhcc-
Confidence 455555555554443 44667887775 99999999999999999999998 789999999999988
Q ss_pred hHhHhhcCCCccccccccccc
Q 004878 703 TVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 703 ~vs~liG~ppgyvG~~e~~~~ 723 (725)
|||.+|+.+|
T Consensus 283 -----------~vGesek~ir 292 (467)
T 4b4t_H 283 -----------YVGEGARMVR 292 (467)
T ss_dssp -----------SSSHHHHHHH
T ss_pred -----------cCCHHHHHHH
Confidence 9999998887
No 89
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=5.1e-13 Score=145.44 Aligned_cols=74 Identities=34% Similarity=0.599 Sum_probs=61.3
Q ss_pred eeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
|+|++++++.|.+.+ .+.+.|+..|+ |+|||||||||||++|+|||+++ +.+|+.++++++.++
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~pr----GvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~- 254 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPK----GALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQM- 254 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCC----EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSS-
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----eeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhc-
Confidence 455666665555443 34567887774 99999999999999999999998 789999999999988
Q ss_pred hHhHhhcCCCccccccccccc
Q 004878 703 TVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 703 ~vs~liG~ppgyvG~~e~~~~ 723 (725)
|||.+|+.+|
T Consensus 255 -----------~vGese~~ir 264 (434)
T 4b4t_M 255 -----------YIGEGAKLVR 264 (434)
T ss_dssp -----------CSSHHHHHHH
T ss_pred -----------ccchHHHHHH
Confidence 9999998887
No 90
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=7e-13 Score=144.46 Aligned_cols=74 Identities=31% Similarity=0.539 Sum_probs=60.5
Q ss_pred eeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
|+|++++++.|.+.+ .+.+.|+..|+ |+|||||||||||++|+|||+++ +.+|+.+++|+++++
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~pr----GvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk- 254 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPK----GVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDK- 254 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCS-
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhccc-
Confidence 455555555554444 44567887774 99999999999999999999998 789999999999988
Q ss_pred hHhHhhcCCCccccccccccc
Q 004878 703 TVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 703 ~vs~liG~ppgyvG~~e~~~~ 723 (725)
|+|.+|..+|
T Consensus 255 -----------~~Gese~~ir 264 (437)
T 4b4t_L 255 -----------YIGESARIIR 264 (437)
T ss_dssp -----------SSSHHHHHHH
T ss_pred -----------cchHHHHHHH
Confidence 9999988776
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.33 E-value=3.1e-11 Score=156.01 Aligned_cols=135 Identities=13% Similarity=0.211 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHH
Q 004878 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377 (725)
Q Consensus 298 ~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~ 377 (725)
....+...+. ...+.++.||+|||||++++.+|+.+ +..++.++|..-... ..+..++..
T Consensus 634 ~~~tl~~Al~--~~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld~--------~~lg~~~~g 693 (2695)
T 4akg_A 634 GFATLTDSLH--QKYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFDY--------QVLSRLLVG 693 (2695)
T ss_dssp HHHHHHHHHH--TTCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCCH--------HHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCCh--------hHhhHHHHH
Confidence 3344444444 34678999999999999999999998 888899988764421 224555555
Q ss_pred HHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHH-------hhhhc---------------CCCeEEEEeccchhh
Q 004878 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL-------KPSLG---------------RGELQCIASTTQDEH 435 (725)
Q Consensus 378 ~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L-------~~~l~---------------~~~v~vI~at~~~~~ 435 (725)
+... +.++++||++.+ ..++...+ ...+. ...+.+++|.|+ .|
T Consensus 694 ~~~~-Gaw~~~DE~nr~-------------~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy 758 (2695)
T 4akg_A 694 ITQI-GAWGCFDEFNRL-------------DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GY 758 (2695)
T ss_dssp HHHH-TCEEEEETTTSS-------------CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CS
T ss_pred HHhc-CCEeeehhhhhc-------------ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-Cc
Confidence 5544 479999999988 22333333 12221 123467788887 47
Q ss_pred hhhhcccHHHHcccceEEecCCCHHHHHHHHH
Q 004878 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (725)
Q Consensus 436 ~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~ 467 (725)
....++..+|++||..|.+..|+.+...+|+-
T Consensus 759 ~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 759 NGRSELPENLKKSFREFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp SSSCCCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred cCcccccHHHHhheEEEEeeCCCHHHHHHHHH
Confidence 77778999999999999999999998888753
No 92
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=7.5e-13 Score=144.01 Aligned_cols=74 Identities=34% Similarity=0.611 Sum_probs=61.4
Q ss_pred eeCcHHHHHHHHHHH--------HHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchh
Q 004878 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERH 702 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v--------~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~ 702 (725)
|+|++++++.|.+.+ .+.+.|+..|+ |+|||||||||||++|+|||+++ +.+|+.++++++.++
T Consensus 174 igGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~pr----GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~- 245 (428)
T 4b4t_K 174 VGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR----GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHK- 245 (428)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCS-
T ss_pred hccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCc----eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhcc-
Confidence 566666666555544 34566887775 99999999999999999999998 789999999999987
Q ss_pred hHhHhhcCCCccccccccccc
Q 004878 703 TVSKLIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 703 ~vs~liG~ppgyvG~~e~~~~ 723 (725)
|+|.+|+.+|
T Consensus 246 -----------~~Ge~e~~ir 255 (428)
T 4b4t_K 246 -----------YLGEGPRMVR 255 (428)
T ss_dssp -----------SCSHHHHHHH
T ss_pred -----------ccchhHHHHH
Confidence 9999998876
No 93
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.33 E-value=6.1e-13 Score=123.61 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=89.2
Q ss_pred cccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHH
Q 004878 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (725)
Q Consensus 291 ~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~ 368 (725)
+++|+++.++++.+.+.. ....+++|+||||||||++|++++... . .++.+++..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChHh-------
Confidence 578999999988887765 567789999999999999999998765 2 67777776654211
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC---CCeEEEEeccchhhh-hhhcccHH
Q 004878 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHR-TQFEKDKA 444 (725)
Q Consensus 369 ~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~at~~~~~~-~~~~ld~~ 444 (725)
...+++. ..+.+|||||++.+ ..+.+..|..+++. ..+++|++||.+... ..- +++.
T Consensus 67 --~~~~~~~---a~~~~l~lDei~~l-------------~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~ 127 (143)
T 3co5_A 67 --PMELLQK---AEGGVLYVGDIAQY-------------SRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEK 127 (143)
T ss_dssp --HHHHHHH---TTTSEEEEEECTTC-------------CHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHH
T ss_pred --hhhHHHh---CCCCeEEEeChHHC-------------CHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHH
Confidence 2334443 33569999999999 34566667777764 458899999876311 111 5677
Q ss_pred HHcccceEEecCC
Q 004878 445 LARRFQPVLISEP 457 (725)
Q Consensus 445 L~~Rf~~I~i~~P 457 (725)
|..||..+.+..|
T Consensus 128 L~~rl~~~~i~lP 140 (143)
T 3co5_A 128 LAGLFSESVVRIP 140 (143)
T ss_dssp HHHHSSSEEEEEC
T ss_pred HHHHhcCcEEeCC
Confidence 8888865555444
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.30 E-value=5.6e-11 Score=136.76 Aligned_cols=219 Identities=22% Similarity=0.284 Sum_probs=134.5
Q ss_pred hhhhhhcCCCcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcc--------cCCCeEEEe
Q 004878 281 TARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--------LLSKRIMSL 352 (725)
Q Consensus 281 ~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~--------l~~~~l~~l 352 (725)
..++++..|++++|++..++.+...+... .+++|+||||||||+++++++..+........ .....+..+
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred cccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 34567788899999999999888887764 68999999999999999999997732210000 000000000
Q ss_pred -----------------------------------------ehhhhhccccccchHHHHHHHHHH---------------
Q 004878 353 -----------------------------------------DMGLLMAGAKERGELEARVTTLIS--------------- 376 (725)
Q Consensus 353 -----------------------------------------d~~~l~~g~~~~g~~~~~l~~~~~--------------- 376 (725)
++... +.............++.
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~--~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g 187 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT--KAPFIDATGAHAGALLGDVRHDPFQSGGLGTP 187 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCS--SCCEEECTTCCHHHHHCEECCCCC----CCCC
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCC--CCCEEEcCCCCHHhcCceEEechhhcCCcccc
Confidence 00000 00000000000011110
Q ss_pred --------HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-----------------------CeE
Q 004878 377 --------EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQ 425 (725)
Q Consensus 377 --------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~ 425 (725)
.+....+.+|||||++.+ ...+++.|+..|+.+ ++.
T Consensus 188 ~~~~i~~g~~~~a~~gvL~LDEi~~l-------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~ 254 (604)
T 3k1j_A 188 AHERVEPGMIHRAHKGVLFIDEIATL-------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFV 254 (604)
T ss_dssp GGGGEECCHHHHTTTSEEEETTGGGS-------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCE
T ss_pred ccccccCceeeecCCCEEEEechhhC-------------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEE
Confidence 011234669999999998 346778888777632 457
Q ss_pred EEEeccchhhhhhhcccHHHHcccc----eEEecCC---CHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhhhhc
Q 004878 426 CIASTTQDEHRTQFEKDKALARRFQ----PVLISEP---SQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYI 497 (725)
Q Consensus 426 vI~at~~~~~~~~~~ld~~L~~Rf~----~I~i~~P---s~ee~~~IL~~~~~~~~~~-~~~~i~~~~l~~l~~~s~~~i 497 (725)
+|++||+... ..++++|.+||. .+.++.. ..+....+++.+.+..... ....++++++..+++.+.++.
T Consensus 255 vI~atn~~~~---~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~ 331 (604)
T 3k1j_A 255 LVAAGNLDTV---DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRA 331 (604)
T ss_dssp EEEEECHHHH---HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTT
T ss_pred EEEecCHHHH---hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhh
Confidence 9999998742 258999999995 3444322 4556666776665554422 335799999999999887766
Q ss_pred ccCC----CchhHHHHHHHHHHHHHH
Q 004878 498 SDRY----LPDKAIDLVDEAGSRAHI 519 (725)
Q Consensus 498 ~~r~----lp~~ai~ll~~a~~~~~~ 519 (725)
..+. .+..+.+++..|...+..
T Consensus 332 g~r~~l~~~~R~l~~llr~A~~~A~~ 357 (604)
T 3k1j_A 332 GRKGHLTLRLRDLGGIVRAAGDIAVK 357 (604)
T ss_dssp CSTTEEECCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHHHHHHh
Confidence 5543 355667777777665543
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.23 E-value=2.4e-10 Score=125.16 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=133.1
Q ss_pred CcccccHHHHHHHHHHH-hc------CCCCCceE--EcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh--
Q 004878 290 DPVIGRETEIQRIIQIL-CR------RTKNNPIL--LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-- 358 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L-~~------~~~~~iLL--~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~-- 358 (725)
+.++||+++++++...+ .. ....+++| +||+|+|||++++.+++.+.... +....+..++.+++....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-AKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-HHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-hccCCceeEEEEECCCCCCH
Confidence 57899999999999888 43 24557888 99999999999999998874310 000013456666653211
Q ss_pred --------c--ccc--ccc-hHHHHHHHHHHHHH-hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc----
Q 004878 359 --------A--GAK--ERG-ELEARVTTLISEIQ-KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---- 420 (725)
Q Consensus 359 --------~--g~~--~~g-~~~~~l~~~~~~~~-~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---- 420 (725)
. +.. ..+ .....+..+...+. ...+.+|+|||+|.+..... ...+....|...+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-------IAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-------SCHHHHHHHHTHHHHSCC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-------cchHHHHHHHHHHHhccc
Confidence 0 000 011 12222333333332 24578999999999953210 12344443333332
Q ss_pred -C--CCeEEEEeccchhhhhhhccc---HHHHcccc-eEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 004878 421 -R--GELQCIASTTQDEHRTQFEKD---KALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (725)
Q Consensus 421 -~--~~v~vI~at~~~~~~~~~~ld---~~L~~Rf~-~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s 493 (725)
. ..+.+|++++..++.. .++ +.+.++|. .+.+++++.++..+++....... .....++++++..++..+
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~--~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~--~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALS--YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG--LRDTVWEPRHLELISDVY 249 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHH--HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH--BCTTSCCHHHHHHHHHHH
T ss_pred CCCCceEEEEEEeccccHHH--HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHH
Confidence 2 5678888887554322 234 66777773 48999999999999998766533 223468899999999988
Q ss_pred hhhcccCCCchhHHHHHHHHHHHH
Q 004878 494 ARYISDRYLPDKAIDLVDEAGSRA 517 (725)
Q Consensus 494 ~~~i~~r~lp~~ai~ll~~a~~~~ 517 (725)
.+.......|..+..++..++..+
T Consensus 250 ~~~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 250 GEDKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp CGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHH
Confidence 843211134556777777665443
No 96
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=7.7e-11 Score=123.49 Aligned_cols=146 Identities=10% Similarity=0.089 Sum_probs=105.5
Q ss_pred ccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHH
Q 004878 294 GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373 (725)
Q Consensus 294 G~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~ 373 (725)
|+++.++.|...+.....++.||+||+|+|||++++++++.+.. ... ....++.++... ...+ ...++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~--~~~--~~~d~~~l~~~~-----~~~~--id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK--FPP--KASDVLEIDPEG-----ENIG--IDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT--SCC--CTTTEEEECCSS-----SCBC--HHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCch--hhc--cCCCEEEEcCCc-----CCCC--HHHHHH
Confidence 67888899999888766667899999999999999999986421 110 133455655331 0111 233566
Q ss_pred HHHHHHhc----CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC--CeEEEEeccchhhhhhhcccHHHHc
Q 004878 374 LISEIQKS----GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALAR 447 (725)
Q Consensus 374 ~~~~~~~~----~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at~~~~~~~~~~ld~~L~~ 447 (725)
+++.+... +..|+||||+|.+ ..+.+|.|+++++.. .+++|.+|+... .+.+++++
T Consensus 70 li~~~~~~p~~~~~kvviIdead~l-------------t~~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~S 131 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERM-------------TQQAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKS 131 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGB-------------CHHHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHT
T ss_pred HHHHHhhccccCCceEEEeccHHHh-------------CHHHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHc
Confidence 77766532 3579999999999 346789999999974 677777777654 67899999
Q ss_pred ccceEEecCCCHHHHHHHHHHHH
Q 004878 448 RFQPVLISEPSQEDAVRILLGLR 470 (725)
Q Consensus 448 Rf~~I~i~~Ps~ee~~~IL~~~~ 470 (725)
| .+.+.+|+.++..++|....
T Consensus 132 R--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 132 R--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--SEEEECCCCHHHHHHHHHHH
T ss_pred e--eEeCCCCCHHHHHHHHHHHh
Confidence 9 89999999999888887654
No 97
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.20 E-value=8.4e-11 Score=130.95 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=120.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh-----hhhhcccccc
Q 004878 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM-----GLLMAGAKER 364 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~-----~~l~~g~~~~ 364 (725)
..++|+++.++.+...+.. +.|+||+||||||||++|++++..+.. +..+..+.+ ..+. |.. .
T Consensus 22 ~~ivGq~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~~t~~dL~-G~~-~ 89 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRFSTPEEVF-GPL-S 89 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTTCCHHHHH-CCB-C
T ss_pred hhhHHHHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhcCCHHHhc-Ccc-c
Confidence 3689999999998887765 468999999999999999999987622 112222222 1221 110 0
Q ss_pred chHHHHHHHHHHHHHhc---CCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC------------eEEEEe
Q 004878 365 GELEARVTTLISEIQKS---GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------LQCIAS 429 (725)
Q Consensus 365 g~~~~~l~~~~~~~~~~---~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------------v~vI~a 429 (725)
+.... -...+..+... .+.|||||||+.+ ..+.++.|+..++.+. ..+|++
T Consensus 90 ~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~-------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 90 IQALK-DEGRYERLTSGYLPEAEIVFLDEIWKA-------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp -----------CBCCTTSGGGCSEEEEESGGGC-------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred HHHHh-hchhHHhhhccCCCcceeeeHHhHhhh-------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 00000 01111111111 2458999999877 4567888888886432 134777
Q ss_pred ccchhhhhhhcccHHHHcccc-eEEecCCCH-HHHHHHHHHHHH-------------------HHHhccCCCCCHHHHHH
Q 004878 430 TTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLGLRE-------------------KYEAHHNCKFTLEAINA 488 (725)
Q Consensus 430 t~~~~~~~~~~ld~~L~~Rf~-~I~i~~Ps~-ee~~~IL~~~~~-------------------~~~~~~~~~i~~~~l~~ 488 (725)
||+.+- .....+++.+||. .+.+++|+. +++..|++.... ......++.++++++++
T Consensus 156 TN~lpe--~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~ 233 (500)
T 3nbx_X 156 SNELPE--ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFEL 233 (500)
T ss_dssp ESSCCC--TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHH
T ss_pred cccCCC--ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHH
Confidence 775321 1224579999994 688999976 677888864321 01122367788999988
Q ss_pred HHHHhhhhcc---c-CCCchhHHHHHHHHHHHHHHh
Q 004878 489 AVHLSARYIS---D-RYLPDKAIDLVDEAGSRAHIE 520 (725)
Q Consensus 489 l~~~s~~~i~---~-r~lp~~ai~ll~~a~~~~~~~ 520 (725)
++.+....-. . ..-+...+.++..+.+.+.+.
T Consensus 234 i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 234 IFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp HHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 8887742110 0 112334455666665555544
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.15 E-value=4.7e-10 Score=145.71 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=94.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHH-H---H------
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE-I---Q------ 379 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~-~---~------ 379 (725)
.+.++||+||+|||||+++..+...+ .+..++.++++..... ..+...++. + .
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~ 1365 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGET 1365 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCc
Confidence 46789999999999998886654333 1445667776554321 112222221 1 0
Q ss_pred ------hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcC--------------CCeEEEEeccchhhhhhh
Q 004878 380 ------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------GELQCIASTTQDEHRTQF 439 (725)
Q Consensus 380 ------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--------------~~v~vI~at~~~~~~~~~ 439 (725)
.++..|+||||++.-... ..+.+....+|+++++. ..+.+|+|+|++......
T Consensus 1366 ~~~p~~~Gk~~VlFiDDiNmp~~D-------~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~ 1438 (3245)
T 3vkg_A 1366 VLRPTQLGKWLVVFCDEINLPSTD-------KYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRV 1438 (3245)
T ss_dssp EEEESSTTCEEEEEETTTTCCCCC-------TTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCC
T ss_pred ccCCCcCCceEEEEecccCCCCcc-------ccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCc
Confidence 022369999999864211 12345677788877763 235789999987423445
Q ss_pred cccHHHHcccceEEecCCCHHHHHHHHHHHHHHH
Q 004878 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (725)
Q Consensus 440 ~ld~~L~~Rf~~I~i~~Ps~ee~~~IL~~~~~~~ 473 (725)
.++++|.|||..+.++.|+.++...|+..+...+
T Consensus 1439 ~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1439 QLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp CCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988776654
No 99
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.12 E-value=1.6e-09 Score=115.58 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=116.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-----------
Q 004878 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----------- 358 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~----------- 358 (725)
+.++||++++++|.+.+... ..++|+||+|+|||++++.+++.. + ++++++....
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHHH
Confidence 46899999999999988763 678999999999999999998764 2 3445543221
Q ss_pred -----c-------------------ccc---ccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHH
Q 004878 359 -----A-------------------GAK---ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (725)
Q Consensus 359 -----~-------------------g~~---~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~ 411 (725)
. +.. ....+...+..+...+...++.+|+|||+|++..... ....++
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~------~~~~~~ 151 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS------RGGKEL 151 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT------TTTHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc------cchhhH
Confidence 0 000 0012333333332223323489999999999943100 013455
Q ss_pred HHHHhhhhcC-CCeEEEEeccchhh-hhh---hcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhccCCCCCHHH
Q 004878 412 SNLLKPSLGR-GELQCIASTTQDEH-RTQ---FEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA 485 (725)
Q Consensus 412 ~~~L~~~l~~-~~v~vI~at~~~~~-~~~---~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~~~~i~~~~ 485 (725)
...|..++.. ..+.+|.+++.... ... ......+..|+ ..+.+.+.+.++..+++..... ..+..++++.
T Consensus 152 ~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~----~~~~~~~~~~ 227 (350)
T 2qen_A 152 LALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR----EVNLDVPENE 227 (350)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHH
T ss_pred HHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHH
Confidence 6666665543 46777777665432 111 12222344455 4899999999999998876543 3456688888
Q ss_pred HHHHHHHhhhh
Q 004878 486 INAAVHLSARY 496 (725)
Q Consensus 486 l~~l~~~s~~~ 496 (725)
+..+...+.++
T Consensus 228 ~~~i~~~tgG~ 238 (350)
T 2qen_A 228 IEEAVELLDGI 238 (350)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 88888888765
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.09 E-value=8.9e-09 Score=133.99 Aligned_cols=135 Identities=12% Similarity=0.172 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHH
Q 004878 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (725)
Q Consensus 297 ~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~ 376 (725)
.-...|.+.|.. ..+..+.||+|||||++++.+|+.+ |..++.++|..-.. + ..+..++.
T Consensus 592 rcy~tl~~Al~~--~~gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~d---~-----~~~g~i~~ 651 (3245)
T 3vkg_A 592 RCYLTLTQALES--RMGGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGFD---L-----QAMSRIFV 651 (3245)
T ss_dssp HHHHHHHHHHHT--TCEEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCCC---H-----HHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCCC---H-----HHHHHHHh
Confidence 344445555554 3446799999999999999999999 78888888865431 1 12444555
Q ss_pred HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc-----------------------CCCeEEEEeccch
Q 004878 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----------------------RGELQCIASTTQD 433 (725)
Q Consensus 377 ~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----------------------~~~v~vI~at~~~ 433 (725)
.+.+. +++.++||++++ ..++...+...+. +..+.++.|+|+
T Consensus 652 G~~~~-GaW~cfDEfNrl-------------~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp- 716 (3245)
T 3vkg_A 652 GLCQC-GAWGCFDEFNRL-------------EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP- 716 (3245)
T ss_dssp HHHHH-TCEEEEETTTSS-------------CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-
T ss_pred hHhhc-CcEEEehhhhcC-------------CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-
Confidence 55444 679999999988 2233333222111 123567788877
Q ss_pred hhhhhhcccHHHHcccceEEecCCCHHHHHHHH
Q 004878 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466 (725)
Q Consensus 434 ~~~~~~~ld~~L~~Rf~~I~i~~Ps~ee~~~IL 466 (725)
.|....++...|+.||..|.+..|+.+...+|+
T Consensus 717 gY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 717 GYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp CGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHH
T ss_pred CccCcccChHHHHhhcEEEEEeCCCHHHHHHHH
Confidence 677777999999999999999999999888876
No 101
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.05 E-value=2.2e-10 Score=124.93 Aligned_cols=88 Identities=32% Similarity=0.604 Sum_probs=64.5
Q ss_pred HhHHHHhcCceeCcHHHHHHHHHHHHHh--hcCCCCC---CCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 621 VGLEEQLKKRVIGQDEAVAAISRAVKRS--RVGLKDP---NRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~v~~~--~~gl~~p---~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.++.+.|.+.|+||++++..+..++... +.++... ..+..++||+||||||||++|++||+.+ +.+|+.+|+
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 3567788899999999999998877432 2222111 1133589999999999999999999998 778999999
Q ss_pred cCCcchhhHhHhhcCCCccccc-ccccc
Q 004878 696 SEYMERHTVSKLIGSPPGYVGV-GEYLS 722 (725)
Q Consensus 696 sE~~~k~~vs~liG~ppgyvG~-~e~~~ 722 (725)
+++.+ +||||+ .+..+
T Consensus 84 ~~~~~-----------~g~vG~d~e~~l 100 (444)
T 1g41_A 84 TKFTE-----------VGYVGKEVDSII 100 (444)
T ss_dssp GGGC---------------CCCCTHHHH
T ss_pred hhhcc-----------cceeeccHHHHH
Confidence 98876 479997 45544
No 102
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.02 E-value=3e-11 Score=138.09 Aligned_cols=202 Identities=12% Similarity=0.154 Sum_probs=115.9
Q ss_pred CCcccccHHHHHHHHHHHhcCC-----------CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh
Q 004878 289 IDPVIGRETEIQRIIQILCRRT-----------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~~~-----------~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l 357 (725)
...++|++..++.+...+.... ..|+||+||||||||++|+++++.+.....+.. . ..++..+
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~---~---~~~~~~l 367 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG---K---GSTAAGL 367 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT---T---CSTTTTS
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC---C---ccccccc
Confidence 3568999998777765555432 128999999999999999999987632211100 0 0011111
Q ss_pred hccc---cccchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCC-----------
Q 004878 358 MAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE----------- 423 (725)
Q Consensus 358 ~~g~---~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~----------- 423 (725)
.... ...|.+... ...+. ...+.|||||||+.+ ..+.++.|+..|+.+.
T Consensus 368 ~~~~~~~~~~g~~~~~-~G~l~---~A~~gil~IDEid~l-------------~~~~q~~Ll~~le~~~i~i~~~g~~~~ 430 (595)
T 3f9v_A 368 TAAVVREKGTGEYYLE-AGALV---LADGGIAVIDEIDKM-------------RDEDRVAIHEAMEQQTVSIAKAGIVAK 430 (595)
T ss_dssp EEECSSGGGTSSCSEE-ECHHH---HHSSSEECCTTTTCC-------------CSHHHHHHHHHHHSSSEEEESSSSEEE
T ss_pred cceeeecccccccccc-CCeeE---ecCCCcEEeehhhhC-------------CHhHhhhhHHHHhCCEEEEecCCcEEE
Confidence 1000 001110000 00111 123569999999998 3356777888777543
Q ss_pred ----eEEEEeccchh--hhh------hhcccHHHHcccc--eEEecCCCHHHHHHHHHHHHHHHHh-ccCCCCCHHHHHH
Q 004878 424 ----LQCIASTTQDE--HRT------QFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEA-HHNCKFTLEAINA 488 (725)
Q Consensus 424 ----v~vI~at~~~~--~~~------~~~ld~~L~~Rf~--~I~i~~Ps~ee~~~IL~~~~~~~~~-~~~~~i~~~~l~~ 488 (725)
+.+|+|+|+.. |.. .+.++++|.+||. .+..+.|+.+ ...|.+.+...... .....++.+.+..
T Consensus 431 ~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~ 509 (595)
T 3f9v_A 431 LNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRK 509 (595)
T ss_dssp ECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHH
T ss_pred ecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHH
Confidence 46899999863 111 1278899999994 4555566666 66666665542211 1123456666666
Q ss_pred HHHHhhhhcccCCCchhHHHHHHHHHH
Q 004878 489 AVHLSARYISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 489 l~~~s~~~i~~r~lp~~ai~ll~~a~~ 515 (725)
+...+...+.. .+++.+.+.+.....
T Consensus 510 ~i~~ar~~~~p-~ls~ea~~~l~~~y~ 535 (595)
T 3f9v_A 510 YIAYARKYVTP-KITSEAKNLITDFFV 535 (595)
T ss_dssp HHHHHHHHHCC-CCCCCTHHHHHHHHT
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHH
Confidence 66666554332 455666666665544
No 103
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.97 E-value=2.7e-10 Score=122.78 Aligned_cols=84 Identities=35% Similarity=0.481 Sum_probs=64.5
Q ss_pred HhHHHHhcCceeCcHHHHHHHHHHHH----HhhcCCCCCC--CCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 621 VGLEEQLKKRVIGQDEAVAAISRAVK----RSRVGLKDPN--RPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~v~----~~~~gl~~p~--rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
..+++.|.+.|+||+++++.+...+. +.+.+..... .+..++||+||||||||++|++||+.+ +.+|+.++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEec
Confidence 45667777789999999999988773 3343433222 233589999999999999999999998 67899999
Q ss_pred ccCCcchhhHhHhhcCCCcccccc
Q 004878 695 MSEYMERHTVSKLIGSPPGYVGVG 718 (725)
Q Consensus 695 ~sE~~~k~~vs~liG~ppgyvG~~ 718 (725)
++++.+ +||+|++
T Consensus 84 ~~~l~~-----------~~~~g~~ 96 (363)
T 3hws_A 84 ATTLTE-----------AGYVGED 96 (363)
T ss_dssp HHHHTT-----------CHHHHHH
T ss_pred hHHhcc-----------ccccccc
Confidence 997653 4677765
No 104
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.96 E-value=3.7e-09 Score=112.94 Aligned_cols=178 Identities=18% Similarity=0.205 Sum_probs=107.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-----------
Q 004878 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----------- 358 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~----------- 358 (725)
+.++||+++++.|.+ +.. ..++|+||+|+|||++++.+++.+. ..++++++....
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN----------LPYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT----------CCEEEEEGGGGTTCSCCCHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEEchhhccccCCCHHHHH
Confidence 468999999999999 765 5889999999999999999998862 224455544220
Q ss_pred ---------------------c---cccccc---h------HHHHHHHHHHHHHhc--CCeEEEEccchhhhhCCCCCCC
Q 004878 359 ---------------------A---GAKERG---E------LEARVTTLISEIQKS--GDVILFIDEVHTLIGSGTVGRG 403 (725)
Q Consensus 359 ---------------------~---g~~~~g---~------~~~~l~~~~~~~~~~--~~~IL~IDEid~l~~~~~~~~~ 403 (725)
. +....+ . ....+..+++.+... ++.+|+|||+|++....
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----- 153 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR----- 153 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-----
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-----
Confidence 0 000000 0 001133444444432 48999999999995421
Q ss_pred CCCCcHHHHHHHhhhhcC-CCeEEEEeccchhh-hhh---hcccHHHHccc-ceEEecCCCHHHHHHHHHHHHHHHHhcc
Q 004878 404 NKGTGLDISNLLKPSLGR-GELQCIASTTQDEH-RTQ---FEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHH 477 (725)
Q Consensus 404 ~~~~~~~~~~~L~~~l~~-~~v~vI~at~~~~~-~~~---~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~~~~~~~~~~~ 477 (725)
..++...|..+... ..+.+|.+++.... ... ......+..|+ ..+.+.+++.++..+++.......
T Consensus 154 ----~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~---- 225 (357)
T 2fna_A 154 ----GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA---- 225 (357)
T ss_dssp ----TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH----
T ss_pred ----chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc----
Confidence 11233444444432 46777777665431 111 12223344465 689999999999999987765432
Q ss_pred CCCCCHHHHHHHHHHhhhh
Q 004878 478 NCKFTLEAINAAVHLSARY 496 (725)
Q Consensus 478 ~~~i~~~~l~~l~~~s~~~ 496 (725)
+...++. ..+...+.++
T Consensus 226 ~~~~~~~--~~i~~~t~G~ 242 (357)
T 2fna_A 226 DIDFKDY--EVVYEKIGGI 242 (357)
T ss_dssp TCCCCCH--HHHHHHHCSC
T ss_pred CCCCCcH--HHHHHHhCCC
Confidence 3333332 5666666654
No 105
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.95 E-value=5.6e-10 Score=120.95 Aligned_cols=77 Identities=32% Similarity=0.411 Sum_probs=61.0
Q ss_pred HHhHHHHhcCceeCcHHHHHHHHHHH----HHhhcCC-------CCC----------CCCCeeEEEEcCCCCcHHHHHHH
Q 004878 620 LVGLEEQLKKRVIGQDEAVAAISRAV----KRSRVGL-------KDP----------NRPTAAMLFCGPTGVGKTELAKS 678 (725)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~v----~~~~~gl-------~~p----------~rp~~~iLl~GPpGtGKT~lAka 678 (725)
+.++.+.|.+.|+||+++++.|..++ ++.+.|+ ++| .++..++||+||||||||++|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 35678888999999999999998887 4554443 111 12234899999999999999999
Q ss_pred HHHHhcCCCCceEEecccCCc
Q 004878 679 LAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 679 LA~~lfg~~~~lIrid~sE~~ 699 (725)
||+.+ +.+|+.++++.+.
T Consensus 92 la~~l---~~~~~~~~~~~~~ 109 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLT 109 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC
T ss_pred HHHHh---CCCEEEecchhhh
Confidence 99998 6689999998875
No 106
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.93 E-value=9.4e-09 Score=111.53 Aligned_cols=180 Identities=18% Similarity=0.251 Sum_probs=117.5
Q ss_pred CCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc-----
Q 004878 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA----- 361 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~----- 361 (725)
++.++|....++++.+.+.+ ....+++|+|++||||+++|+.+...... .+.+++.+||..+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCCCHHHHHHHh
Confidence 45789988888888776655 45678899999999999999999887533 25677888987643100
Q ss_pred --cccchHHHH---HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------C
Q 004878 362 --KERGELEAR---VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------E 423 (725)
Q Consensus 362 --~~~g~~~~~---l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~ 423 (725)
...|.+... -...++ ...+.+||||||+.+ ..+++..|+.+++.+ .
T Consensus 209 fg~~~g~~tga~~~~~g~~~---~a~~gtlfldei~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 272 (387)
T 1ny5_A 209 FGYEKGAFTGAVSSKEGFFE---LADGGTLFLDEIGEL-------------SLEAQAKLLRVIESGKFYRLGGRKEIEVN 272 (387)
T ss_dssp HCBCTTSSTTCCSCBCCHHH---HTTTSEEEEESGGGC-------------CHHHHHHHHHHHHHSEECCBTCCSBEECC
T ss_pred cCCCCCCCCCcccccCCcee---eCCCcEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 001111000 011222 234569999999999 557788888887743 4
Q ss_pred eEEEEeccchhhh--hhhcccHHHHcccceEEecCCCH----HHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHH
Q 004878 424 LQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVH 491 (725)
Q Consensus 424 v~vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~----ee~~~IL~~~~~~~~~~~~---~~i~~~~l~~l~~ 491 (725)
+++|++||.+... ..-...+.|..|+..+.+..|+. ++...++..++.++....+ ..+++++++.+..
T Consensus 273 ~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 273 VRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS 349 (387)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 6799999875311 11234567777887777776654 5555556666655543333 3488998887765
No 107
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.93 E-value=5.6e-10 Score=117.06 Aligned_cols=64 Identities=25% Similarity=0.467 Sum_probs=52.4
Q ss_pred eeCcHHHHHHHHHHHHH--------hhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 631 VIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~--------~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
|+|++++++.+...+.+ ...|+..+ .++|||||||||||++|++||+.+ +.+++.++++++.++
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~----~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS----KGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM 88 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----SEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC----ceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHHhh
Confidence 78888888888777654 34465544 389999999999999999999998 678999999987654
No 108
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.92 E-value=3.7e-09 Score=113.88 Aligned_cols=178 Identities=18% Similarity=0.255 Sum_probs=115.2
Q ss_pred CcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccc------
Q 004878 290 DPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA------ 361 (725)
Q Consensus 290 ~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~------ 361 (725)
..++|....+.++...+.+ ....+++++|++||||+++++.+...... ...++.+||..+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r--------~~~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR--------KGAFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC--------CSCEEEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc--------cCCcEEEEcccCChHHHHHHhc
Confidence 3578888777777665544 45677999999999999999999877632 1227888987643110
Q ss_pred -cccchHHHH---HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-------------Ce
Q 004878 362 -KERGELEAR---VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (725)
Q Consensus 362 -~~~g~~~~~---l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v 424 (725)
...|.+... -...++ ...+.+||||||+.+ ..+.+..|+.+++.+ .+
T Consensus 201 g~~~g~~tga~~~~~g~~~---~a~~gtlfldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 201 GHEKGAFTGALTRKKGKLE---LADQGTLFLDEVGEL-------------DQRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp EECSCSSSSCCCCEECHHH---HTTTSEEEEETGGGS-------------CHHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred CccccccCCcccccCChHh---hcCCCeEEecChhhC-------------CHHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 001111000 011222 233568999999999 567888888888754 46
Q ss_pred EEEEeccchhhh--hhhcccHHHHcccceEEecCCCH----HHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHH
Q 004878 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVH 491 (725)
Q Consensus 425 ~vI~at~~~~~~--~~~~ld~~L~~Rf~~I~i~~Ps~----ee~~~IL~~~~~~~~~~~~---~~i~~~~l~~l~~ 491 (725)
++|++||.+... ..-...+.|..|+..+.|..|+. ++...++..++.++....+ ..+++++++.+..
T Consensus 265 rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 265 RVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp EEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred EEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 799999876422 11234567888887666555533 5666677777766644333 4589999887765
No 109
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.91 E-value=3.5e-10 Score=116.82 Aligned_cols=78 Identities=24% Similarity=0.384 Sum_probs=51.6
Q ss_pred hccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCce
Q 004878 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSM 690 (725)
Q Consensus 611 ~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~l 690 (725)
.++|++.+++.++++.|.+.+++ .+.........|+..|. |++|+||||||||+||++||.++ +..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~------~~~~~~~l~~~~l~~~~----GvlL~Gp~GtGKTtLakala~~~---~~~~ 72 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILA------PVRNPDQFKALGLVTPA----GVLLAGPPGCGKTLLAKAVANES---GLNF 72 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTH------HHHSHHHHHHTTCCCCS----EEEEESSTTSCHHHHHHHHHHHT---TCEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH------HhhCHHHHHHcCCCCCC----eEEEECCCCCcHHHHHHHHHHHc---CCCE
Confidence 56677666666666655543322 12222234456776663 79999999999999999999997 5579
Q ss_pred EEecccCCcch
Q 004878 691 LRLDMSEYMER 701 (725)
Q Consensus 691 Irid~sE~~~k 701 (725)
|.++++++.++
T Consensus 73 i~i~g~~l~~~ 83 (274)
T 2x8a_A 73 ISVKGPELLNM 83 (274)
T ss_dssp EEEETTTTCSS
T ss_pred EEEEcHHHHhh
Confidence 99999998765
No 110
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.90 E-value=1.5e-09 Score=114.83 Aligned_cols=78 Identities=28% Similarity=0.442 Sum_probs=57.8
Q ss_pred eeCcHHHHHHHHHHHHH----hhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhH
Q 004878 631 VIGQDEAVAAISRAVKR----SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSK 706 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~----~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~ 706 (725)
|+|++++++.+...+.+ ....- ...+|..++|||||||||||++|+++|+++ .+.+|+.++++++..+
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~-~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~~----- 85 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFT-GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK----- 85 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSC-TTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCCS-----
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHh-CCCCCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHhh-----
Confidence 78888888888776643 22211 112333599999999999999999999997 3568999999999875
Q ss_pred hhcCCCccccccccccc
Q 004878 707 LIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 707 liG~ppgyvG~~e~~~~ 723 (725)
|+|.+|+.+|
T Consensus 86 -------~~g~~~~~~~ 95 (322)
T 1xwi_A 86 -------WLGESEKLVK 95 (322)
T ss_dssp -------SCCSCHHHHH
T ss_pred -------hhhHHHHHHH
Confidence 6777666544
No 111
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.90 E-value=1.7e-09 Score=113.43 Aligned_cols=77 Identities=31% Similarity=0.606 Sum_probs=60.4
Q ss_pred HhHHHHhcCceeCcHHHHHHHHHHHHH--hhcCCCCC---CCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 621 VGLEEQLKKRVIGQDEAVAAISRAVKR--SRVGLKDP---NRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~v~~--~~~gl~~p---~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.++.+.|.+.|+||+++++.+...+.. .+.++..+ .++..++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 456777888999999999999988865 23333211 1112389999999999999999999998 668999999
Q ss_pred cCCcc
Q 004878 696 SEYME 700 (725)
Q Consensus 696 sE~~~ 700 (725)
+++.+
T Consensus 84 ~~~~~ 88 (310)
T 1ofh_A 84 TKFTE 88 (310)
T ss_dssp GGGSS
T ss_pred hhccc
Confidence 98865
No 112
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.89 E-value=1.6e-09 Score=120.39 Aligned_cols=69 Identities=29% Similarity=0.347 Sum_probs=59.7
Q ss_pred cCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.+.++||+++++.+...+...+.|...| .++|||||||||||++|++||+++ |...+|+.++++++.++
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~----~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAG----RAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVYST 104 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTT----CEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGCCS
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCC----CeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHHHH
Confidence 4569999999999998888887776544 389999999999999999999997 44488999999999876
No 113
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.88 E-value=1e-09 Score=114.59 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=49.8
Q ss_pred eCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 632 ~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+..+..++.+...+.+....+.....|. ++|||||||||||++|++||+.+ +.++++++++++.++
T Consensus 10 y~~~~~~~~~~~~~~k~~l~~~~~~~p~-~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~ 75 (293)
T 3t15_A 10 YIAPAFMDKLVVHITKNFLKLPNIKVPL-ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG 75 (293)
T ss_dssp ECCHHHHHHHHHHHHHTTSCCTTCCCCS-EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc
Confidence 3344555666666655555444444454 99999999999999999999999 778999999988654
No 114
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.85 E-value=1.2e-09 Score=115.74 Aligned_cols=68 Identities=31% Similarity=0.466 Sum_probs=52.4
Q ss_pred eeCcHHHHHHHHHHHHHhhc---CCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 631 VIGQDEAVAAISRAVKRSRV---GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~---gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
|+|++++++.|...+.+... -.....+|..++|||||||||||++|++||+++ +.+|+.++++++..+
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK 90 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTT
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhc
Confidence 78999999888877643211 111223344599999999999999999999998 778999999887654
No 115
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.85 E-value=1e-09 Score=124.28 Aligned_cols=120 Identities=22% Similarity=0.270 Sum_probs=77.4
Q ss_pred cCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCc
Q 004878 592 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671 (725)
Q Consensus 592 v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtG 671 (725)
.....+..++..++++||.+.+.+ ...+.+.++.|.+.++|+++++..+...+.........+ ...+||+||||||
T Consensus 45 ~e~~~~~~~l~~~~~lp~~~~~~~-~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~---g~~vll~Gp~GtG 120 (543)
T 3m6a_A 45 AESSVIRNYIDWLVALPWTDETDD-KLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLK---GPILCLAGPPGVG 120 (543)
T ss_dssp TTTTHHHHHHHHHHHSCSSCCCCC-CCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCC---SCEEEEESSSSSS
T ss_pred chHhHHHHHHHHHhcCCCCccccc-cccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCC---CCEEEEECCCCCC
Confidence 344567788888889998765533 223456677788889999999999987776555444432 2389999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCccccccccc
Q 004878 672 KTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGVGEYL 721 (725)
Q Consensus 672 KT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppgyvG~~e~~ 721 (725)
||++|++||..+ +.++++++++.+.+ .+.+.|....|+|+..+.
T Consensus 121 KTtlar~ia~~l---~~~~~~i~~~~~~~---~~~~~g~~~~~ig~~~~~ 164 (543)
T 3m6a_A 121 KTSLAKSIAKSL---GRKFVRISLGGVRD---ESEIRGHRRTYVGAMPGR 164 (543)
T ss_dssp HHHHHHHHHHHH---TCEEEEECCCC-----------------------C
T ss_pred HHHHHHHHHHhc---CCCeEEEEecccch---hhhhhhHHHHHhccCchH
Confidence 999999999998 67899999988755 344455555555554443
No 116
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.83 E-value=2.8e-09 Score=111.97 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=62.9
Q ss_pred HHHhHHHHhcCceeCcHHHHHHHHHHHHH-------hhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC----C
Q 004878 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKR-------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS----E 687 (725)
Q Consensus 619 ~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~-------~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~----~ 687 (725)
.+.++.+.|...++|++++++.|...+.. .+.|+..+ ++..++||+||||||||++|+++|+.+... .
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~ 99 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRK 99 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSS
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCC
Confidence 45567777777899999999999876643 34566654 344489999999999999999999998432 2
Q ss_pred CceEEecccCCcch
Q 004878 688 SSMLRLDMSEYMER 701 (725)
Q Consensus 688 ~~lIrid~sE~~~k 701 (725)
.+++.++.+++..+
T Consensus 100 ~~~~~~~~~~l~~~ 113 (309)
T 3syl_A 100 GHLVSVTRDDLVGQ 113 (309)
T ss_dssp CCEEEECGGGTCCS
T ss_pred CcEEEEcHHHhhhh
Confidence 37999998887654
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.76 E-value=2.6e-08 Score=97.63 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=62.5
Q ss_pred hhhhhcCCCcccccH----HHHHHHHHHHhcCC----CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEee
Q 004878 282 ARASEELIDPVIGRE----TEIQRIIQILCRRT----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (725)
Q Consensus 282 ~~~~~~~l~~liG~~----~~i~~l~~~L~~~~----~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld 353 (725)
+.+++.+|+++++.+ ..++.+.+++.... +.+++|+||+|||||+++++++..+... +..++.++
T Consensus 17 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~~~ 89 (202)
T 2w58_A 17 REILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLIVY 89 (202)
T ss_dssp GGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEEE
T ss_pred HHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEE
Confidence 345566788888644 34455555555432 2789999999999999999999988542 45667777
Q ss_pred hhhhhccc---cccchHHHHHHHHHHHHHhcCCeEEEEccchhh
Q 004878 354 MGLLMAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 354 ~~~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l 394 (725)
+..+.... ...+.+ ..++..+... .+|+|||++..
T Consensus 90 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 90 VPELFRELKHSLQDQTM----NEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHHC---CCC----HHHHHHHHHS--SEEEEEEECCC
T ss_pred hHHHHHHHHHHhccchH----HHHHHHhcCC--CEEEEcCCCCC
Confidence 76543210 011111 2223333332 49999999765
No 118
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.75 E-value=3.2e-09 Score=113.95 Aligned_cols=68 Identities=31% Similarity=0.481 Sum_probs=52.0
Q ss_pred ceeCcHHHHHHHHHHHHHh----hcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRS----RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~----~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.|+|++++++.|...+.+. ... ....+|..++|||||||||||++|++||+++ +.+|+.++++++.++
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~-~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK 123 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGG-CSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHH-hcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh
Confidence 4889999988888776432 211 1122344589999999999999999999998 678999999877654
No 119
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.75 E-value=4.5e-08 Score=121.74 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=32.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.+|+|||||||||+||+++|.+.--.+.+.+.|+..|.++.
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~ 1124 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 1124 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHH
Confidence 59999999999999999999876333456677777777654
No 120
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.75 E-value=7.6e-09 Score=114.40 Aligned_cols=65 Identities=31% Similarity=0.550 Sum_probs=53.5
Q ss_pred ceeCcHHHHHHHHHHHHHh-------hcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRS-------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~-------~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.|+|++++++.+...+.+. ..|.+.|. ++||+||||||||++|++||.++ +.+|+.++++++.+.
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~----gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPK----GILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL 88 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCS----EEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCC----eEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH
Confidence 3788999888888776543 33555443 89999999999999999999998 678999999999875
No 121
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.75 E-value=9.4e-09 Score=104.98 Aligned_cols=65 Identities=35% Similarity=0.521 Sum_probs=50.6
Q ss_pred ceeCcHHHHHHHHHHHHHhh-------cCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRSR-------VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~-------~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|++++++.+...+.+.. .|...| .++||+||||||||++|++||+.+ +.+++.++++++.+.
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIP----KGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM 84 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCC----CEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCC----CeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH
Confidence 47899999888877665432 233333 389999999999999999999998 567999999998764
No 122
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.75 E-value=8.3e-09 Score=105.45 Aligned_cols=66 Identities=35% Similarity=0.486 Sum_probs=52.6
Q ss_pred CceeCcHHHHHHHHHHHHHhh-------cCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 629 KRVIGQDEAVAAISRAVKRSR-------VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~-------~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+.++|+++++..+...+.... .|...| .++||+||||||||++|++||+.+ +.+++.++++++.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~----~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVP----KGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCC----CEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCC----ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh
Confidence 458999999999887765432 233333 389999999999999999999998 678999999998764
No 123
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.72 E-value=8.3e-09 Score=114.05 Aligned_cols=78 Identities=28% Similarity=0.448 Sum_probs=51.1
Q ss_pred eeCcHHHHHHHHHHHHHh----hcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhH
Q 004878 631 VIGQDEAVAAISRAVKRS----RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSK 706 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~----~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~ 706 (725)
|+|++++++.+...+.+. ... ....+|..++|||||||||||++|++||+++ .+.+|+.++++++..+
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~~~~~-~~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~----- 207 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKFPHLF-TGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK----- 207 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHCTTTT-SGGGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC----------
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHh-hccCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh-----
Confidence 788999988888776432 211 1112233599999999999999999999997 2458999999998765
Q ss_pred hhcCCCccccccccccc
Q 004878 707 LIGSPPGYVGVGEYLSR 723 (725)
Q Consensus 707 liG~ppgyvG~~e~~~~ 723 (725)
|+|..+..+|
T Consensus 208 -------~~g~~~~~~~ 217 (444)
T 2zan_A 208 -------WLGESEKLVK 217 (444)
T ss_dssp -----------CCCTHH
T ss_pred -------hcchHHHHHH
Confidence 6666666544
No 124
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.72 E-value=1.3e-08 Score=97.94 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=60.5
Q ss_pred hhhhcCCCcccc----cHHHHHHHHHHHhc---CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehh
Q 004878 283 RASEELIDPVIG----RETEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 283 ~~~~~~l~~liG----~~~~i~~l~~~L~~---~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~ 355 (725)
++++.+|+++++ +++.++.+.+++.. ..+.+++|+||+|+||||++++++..+... .+..++.+++.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~------~g~~~~~~~~~ 76 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK------KGIRGYFFDTK 76 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH------SCCCCCEEEHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH------cCCeEEEEEHH
Confidence 456778888886 34455555555433 346789999999999999999999988521 14445556655
Q ss_pred hhhcccc---ccchHHHHHHHHHHHHHhcCCeEEEEccchhh
Q 004878 356 LLMAGAK---ERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 356 ~l~~g~~---~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l 394 (725)
.+..... ..+... .++..+. .+.+|+|||++..
T Consensus 77 ~~~~~~~~~~~~~~~~----~~~~~~~--~~~llilDE~~~~ 112 (180)
T 3ec2_A 77 DLIFRLKHLMDEGKDT----KFLKTVL--NSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHTCCS----HHHHHHH--TCSEEEEETCSSS
T ss_pred HHHHHHHHHhcCchHH----HHHHHhc--CCCEEEEeCCCCC
Confidence 5431100 000000 1222222 4669999999754
No 125
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.69 E-value=1.1e-08 Score=106.67 Aligned_cols=66 Identities=30% Similarity=0.520 Sum_probs=52.1
Q ss_pred ceeCcHHHHHHHHHHHHHhh------cCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRSR------VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~------~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|+++++..+...+.... .++.. |..++||+||||||||++|++||+.+ +.+|+.++++++..+
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~---~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRA---PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK 93 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGC---CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCC---CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc
Confidence 37899999999887775432 12222 22499999999999999999999997 678999999988764
No 126
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.69 E-value=8.7e-09 Score=105.88 Aligned_cols=65 Identities=31% Similarity=0.497 Sum_probs=51.0
Q ss_pred ceeCcHHHHHHHHHHHHH-------hhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKR-------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~-------~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|++++++.+...+.. ...|...|. ++||+||||||||++|++||+.+ +.+++.++++++.+.
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPK----GVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIEM 83 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCS----CCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTTS
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCc----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHHh
Confidence 477888888877766643 223444442 79999999999999999999998 668999999988764
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.69 E-value=1.1e-08 Score=105.94 Aligned_cols=64 Identities=31% Similarity=0.562 Sum_probs=51.5
Q ss_pred eeCcHHHHHHHHHHHHHh--------hcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 631 VIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~--------~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
++|++++++.|...+... ..|+..+ .++||+||||||||++|++||+.+ +.+++.++++++..+
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPP----KGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK 90 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCC----SEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh
Confidence 788888888887766442 3344444 389999999999999999999998 778999999988654
No 128
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.65 E-value=9.4e-08 Score=103.48 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCcccccHHHHHHHHHHHhcCC-----CCCceEEcCCCChHHHHHHHH-HHHHHhcCCCcccCCCeEEEeehh----hhh
Q 004878 289 IDPVIGRETEIQRIIQILCRRT-----KNNPILLGESGVGKTAIAEGL-AIRIVQAEVPVFLLSKRIMSLDMG----LLM 358 (725)
Q Consensus 289 l~~liG~~~~i~~l~~~L~~~~-----~~~iLL~Gp~G~GKT~la~~l-a~~l~~~~~p~~l~~~~l~~ld~~----~l~ 358 (725)
+.+++|++...+.+.-.+.... .-|+||+|+||+ ||.+++++ ++.+.. .++..+.. .+.
T Consensus 212 IapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR----------~~ft~g~~ss~~gLt 280 (506)
T 3f8t_A 212 IAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR----------GVYVDLRRTELTDLT 280 (506)
T ss_dssp HCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS----------EEEEEGGGCCHHHHS
T ss_pred hcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC----------eEEecCCCCCccCce
Confidence 3349999987666665555422 238999999999 99999999 654311 11211110 111
Q ss_pred ccccc-cchHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC-----------CeEE
Q 004878 359 AGAKE-RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------ELQC 426 (725)
Q Consensus 359 ~g~~~-~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-----------~v~v 426 (725)
..... .| +.-+ ...+. ...+.++|||||+.+ ....+..|+..|+.+ .+.+
T Consensus 281 ~s~r~~tG-~~~~-~G~l~---LAdgGvl~lDEIn~~-------------~~~~qsaLlEaMEe~~VtI~G~~lparf~V 342 (506)
T 3f8t_A 281 AVLKEDRG-WALR-AGAAV---LADGGILAVDHLEGA-------------PEPHRWALMEAMDKGTVTVDGIALNARCAV 342 (506)
T ss_dssp EEEEESSS-EEEE-ECHHH---HTTTSEEEEECCTTC-------------CHHHHHHHHHHHHHSEEEETTEEEECCCEE
T ss_pred EEEEcCCC-cccC-CCeeE---EcCCCeeehHhhhhC-------------CHHHHHHHHHHHhCCcEEECCEEcCCCeEE
Confidence 00000 01 1000 00111 123569999999988 456778888888754 4689
Q ss_pred EEeccchhhh------hhhcccHHHHcccc--eEEecCCCHHH
Q 004878 427 IASTTQDEHR------TQFEKDKALARRFQ--PVLISEPSQED 461 (725)
Q Consensus 427 I~at~~~~~~------~~~~ld~~L~~Rf~--~I~i~~Ps~ee 461 (725)
|+++|+.+.. ....+.+++.+||. .+.++.|+.++
T Consensus 343 IAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 343 LAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred EEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 9999987511 12478899999996 34456665544
No 129
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.64 E-value=3.5e-08 Score=101.16 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=59.7
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG 709 (725)
.++|++.++..+...+..... .+ .++||+||||||||++|++|++.+...+.+|+.++++++.+....+.|+|
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~---~~----~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g 79 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP---LD----KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFG 79 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT---SC----SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHC
T ss_pred cceeCCHHHHHHHHHHHHHhC---CC----CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcC
Confidence 478999999888777765431 11 27999999999999999999999865567899999999988777788999
Q ss_pred CCCc-cccc
Q 004878 710 SPPG-YVGV 717 (725)
Q Consensus 710 ~ppg-yvG~ 717 (725)
..+| |.|.
T Consensus 80 ~~~~~~~g~ 88 (265)
T 2bjv_A 80 HEAGAFTGA 88 (265)
T ss_dssp CC-------
T ss_pred Ccccccccc
Confidence 7665 4444
No 130
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.63 E-value=4.9e-08 Score=90.48 Aligned_cols=64 Identities=31% Similarity=0.491 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
+||+.++++|+.|..+|+++|+.+|+++|||+||++++++.+.++|+++|+|.+.+++.+...+
T Consensus 7 ~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l 70 (145)
T 3fes_A 7 RFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDME 70 (145)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999887765
No 131
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.60 E-value=7.5e-08 Score=89.33 Aligned_cols=64 Identities=28% Similarity=0.457 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
.||+.++++|+.|..+|+++|+.+|+++|||+||++++++.+.++|+++|+|.+.++..+...+
T Consensus 6 ~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l 69 (146)
T 3fh2_A 6 RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEII 69 (146)
T ss_dssp GBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999998899999999999999999999887765
No 132
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.60 E-value=2.5e-08 Score=107.03 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=52.6
Q ss_pred ceeCcHHHHHHHHHHHHHhhcC---CCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRSRVG---LKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~g---l~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|++++++.|...+.+.... .....++..++||+||||||||++|++||+.+ +.+|+.++++++.++
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK 156 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc
Confidence 4889999999988877652110 00011223489999999999999999999997 678999999988765
No 133
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.58 E-value=4.4e-08 Score=108.94 Aligned_cols=65 Identities=31% Similarity=0.521 Sum_probs=52.1
Q ss_pred ceeCcHHHHHHHHHHHHHhh-------cCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRSR-------VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~-------~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.|+|+++++..+...+.+.. .|++.| .++||+||||||||+||++||.++ +..++.++++++.+.
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip----~GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 103 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCC----SEEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCC----ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh
Confidence 48899999888887765432 233333 279999999999999999999997 578999999998764
No 134
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.58 E-value=2e-08 Score=111.83 Aligned_cols=65 Identities=28% Similarity=0.473 Sum_probs=53.2
Q ss_pred ceeCcHHHHHHHHHHHHHh--------hcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~--------~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|+++++..|...+.+. ..|...| .++|||||||||||++|++||+.+ +.+|+.++++++.++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~----~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP----RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK 277 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----CEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHTS
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhhh
Confidence 4889999999888776543 3345444 389999999999999999999997 778999999887654
No 135
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=98.58 E-value=1.1e-07 Score=88.25 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
.||+.++++|+.|..+|+++|+.+|+++|||+||++++++.+.++|+++|+|.+.++..+...+
T Consensus 5 ~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l 68 (148)
T 1khy_A 5 RLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQAL 68 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999887766
No 136
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.57 E-value=4.2e-08 Score=106.63 Aligned_cols=69 Identities=28% Similarity=0.433 Sum_probs=50.9
Q ss_pred ceeCcHHHHHHHHHHHHHhhcC---CCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRSRVG---LKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~g---l~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|+++++..|...+...... ......|..++|||||||||||++|++||+.+ +.+|+.++++++..+
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK 187 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC---
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc
Confidence 3899999999998877543210 00011222499999999999999999999997 678999999998765
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.54 E-value=9.2e-08 Score=89.03 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=66.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~ID 389 (725)
...+++|+||+|+|||+++++++..+.. .+.+++.++...+... .+ ...+.+|+||
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~~~~~~------------~~-----~~~~~lLilD 90 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAASMPLT------------DA-----AFEAEYLAVD 90 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETTTSCCC------------GG-----GGGCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHHHhhHH------------HH-----HhCCCEEEEe
Confidence 5667899999999999999999998853 2555677766554321 01 1235699999
Q ss_pred cchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccc
Q 004878 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450 (725)
Q Consensus 390 Eid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~ 450 (725)
|++.+.. .....+.+++....+++..++|.+++... ..+... +.|.+||.
T Consensus 91 E~~~~~~---------~~~~~l~~li~~~~~~g~~~iiits~~~p-~~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 91 QVEKLGN---------EEQALLFSIFNRFRNSGKGFLLLGSEYTP-QQLVIR-EDLRTRMA 140 (149)
T ss_dssp STTCCCS---------HHHHHHHHHHHHHHHHTCCEEEEEESSCT-TTSSCC-HHHHHHGG
T ss_pred CccccCh---------HHHHHHHHHHHHHHHcCCcEEEEECCCCH-HHcccc-HHHHHHHh
Confidence 9987621 11234555555555566553444444322 112233 89999984
No 138
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=98.54 E-value=1.1e-07 Score=90.24 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
.||+.++++|+.|..+|+++|+.+|++||||+||++++++.+.++|+++|+|.+.+++.+. .+
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l 86 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-ST 86 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred HcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 3999999999999999999999999999999999999999999999999999999999887 65
No 139
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.53 E-value=1.4e-07 Score=87.83 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
.||+.++++|+.|..+|+++|+.+|+++|||+||++++++.+.++|+++|+|.+.++..+...+
T Consensus 5 ~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l 68 (150)
T 2y1q_A 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI 68 (150)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999999999999999999887765
No 140
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.49 E-value=1e-06 Score=93.82 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=111.2
Q ss_pred HhcCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHH----hc
Q 004878 306 LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KS 381 (725)
Q Consensus 306 L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~----~~ 381 (725)
+..+..+..||+||+|.||++.++.+++.+...+.. ...++.++ +. .+ ++.+++.+. .+
T Consensus 13 l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~------~~---~~----~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 13 LNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSID------PN---TD----WNAIFSLCQAMSLFA 75 (343)
T ss_dssp HHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECC------TT---CC----HHHHHHHHHHHHHCC
T ss_pred HhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEec------CC---CC----HHHHHHHhcCcCCcc
Confidence 333455567899999999999999999987532110 11223332 11 12 334444443 24
Q ss_pred CCeEEEEccchh-hhhCCCCCCCCCCCcHHHHHHHhhhhcC--CCeEEEEeccc-hhhhhhhcccHHHHcccceEEecCC
Q 004878 382 GDVILFIDEVHT-LIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQ-DEHRTQFEKDKALARRFQPVLISEP 457 (725)
Q Consensus 382 ~~~IL~IDEid~-l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at~~-~~~~~~~~ld~~L~~Rf~~I~i~~P 457 (725)
+..|++|||+|. + ..+.++.|+.++++ ..+++|.+++. +.-.+...+-+++.+|+..+.+.++
T Consensus 76 ~~kvvii~~~~~kl-------------~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 76 SRQTLLLLLPENGP-------------NAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp SCEEEEEECCSSCC-------------CTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred CCeEEEEECCCCCC-------------ChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 577999999998 7 22467778888886 34555544433 2111122455789999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q 004878 458 SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (725)
Q Consensus 458 s~ee~~~IL~~~~~~~~~~~~~~i~~~~l~~l~~~s~~~i~~r~lp~~ai~ll~~a~~ 515 (725)
+.++....++..+. ..++.+++++++.++..+.+.. ..+...++..+.
T Consensus 143 ~~~~l~~~l~~~~~----~~g~~i~~~a~~~l~~~~~gdl------~~~~~elekl~l 190 (343)
T 1jr3_D 143 EQAQLPRWVAARAK----QLNLELDDAANQVLCYCYEGNL------LALAQALERLSL 190 (343)
T ss_dssp CTTHHHHHHHHHHH----HTTCEECHHHHHHHHHSSTTCH------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhchHH------HHHHHHHHHHHH
Confidence 99998888877766 4588999999999998876543 245555555443
No 141
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.48 E-value=1.2e-07 Score=99.48 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=58.9
Q ss_pred hhhcCCCccccc----HHHHHHHHHHHhcC---CCCCceEEcCCCChHHHHHHHHHHHHH-hcCCCcccCCCeEEEeehh
Q 004878 284 ASEELIDPVIGR----ETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIV-QAEVPVFLLSKRIMSLDMG 355 (725)
Q Consensus 284 ~~~~~l~~liG~----~~~i~~l~~~L~~~---~~~~iLL~Gp~G~GKT~la~~la~~l~-~~~~p~~l~~~~l~~ld~~ 355 (725)
+++.+|+++++. ...+..+.+++... ...+++|+||||||||+|+.+++..+. .. +..++.+++.
T Consensus 118 ~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~~~ 190 (308)
T 2qgz_A 118 YRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLHFP 190 (308)
T ss_dssp GGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEEHH
T ss_pred HHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEEHH
Confidence 344566666652 33444555555542 257899999999999999999999986 43 5667777766
Q ss_pred hhhcc---ccccchHHHHHHHHHHHHHhcCCeEEEEccchhh
Q 004878 356 LLMAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 356 ~l~~g---~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l 394 (725)
.+... ....+. +..++..+.. ..+|||||++..
T Consensus 191 ~l~~~l~~~~~~~~----~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGS----VKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC--------CCTTHHHHT--SSEEEEETCCC-
T ss_pred HHHHHHHHHhccch----HHHHHHHhcC--CCEEEEcCCCCC
Confidence 54321 111111 1122222322 349999999655
No 142
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.45 E-value=1.8e-07 Score=86.54 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=50.3
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|++.++..+...+..... .+ ..+||+||||||||++|++|++.....+.+|+ ++++.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~----~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TD----IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CC----SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS
T ss_pred CceeCCHHHHHHHHHHHHHhC---CC----CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc
Confidence 478999999988887766521 11 27899999999999999999998766677899 999988654
No 143
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.44 E-value=3.4e-07 Score=97.08 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=55.1
Q ss_pred HHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccC
Q 004878 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (725)
Q Consensus 619 ~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE 697 (725)
.+..+...+...++||++++..+...+... .++||+||||||||++|+++|+.+ +..++++++..
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-----------~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~ 81 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICTG-----------GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTP 81 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-----------CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHcC-----------CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCC
Confidence 456778888899999999999988777653 279999999999999999999998 56789988753
No 144
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.37 E-value=1.8e-07 Score=95.12 Aligned_cols=63 Identities=32% Similarity=0.552 Sum_probs=45.7
Q ss_pred eeCcHHHHHHHHHHHHH-------hhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 631 VIGQDEAVAAISRAVKR-------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~-------~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
++|+++++..+...... ...++..|. +++|+||||||||+++++||..+ ...++.++++++.+
T Consensus 18 i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~----g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPK----GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE 87 (254)
T ss_dssp CCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCS----EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCC----eEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHH
Confidence 56666666666544432 233444442 79999999999999999999997 56799999876643
No 145
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.37 E-value=5.8e-07 Score=94.05 Aligned_cols=77 Identities=26% Similarity=0.416 Sum_probs=63.5
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG 709 (725)
.++|++.++..+...+..... .+ .++||+||||||||++|++|++.....+.+|+.+|++.+.+...-+.|+|
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~---~~----~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP---SD----ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS---TT----SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTC
T ss_pred CcEECCHHHHHHHHHHHHHhC---CC----CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcC
Confidence 478999999988887776531 11 37999999999999999999998755567899999999988777888998
Q ss_pred CCCc
Q 004878 710 SPPG 713 (725)
Q Consensus 710 ~ppg 713 (725)
..+|
T Consensus 76 ~~~g 79 (304)
T 1ojl_A 76 HEKG 79 (304)
T ss_dssp CCSS
T ss_pred cccc
Confidence 7665
No 146
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.36 E-value=4.5e-07 Score=100.92 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=60.9
Q ss_pred HHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 004878 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (725)
Q Consensus 617 ~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s 696 (725)
...+..+.+.+...++||+++++.+..++.... ++||+||||||||++|++||+.+ +....|+.++..
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~-----------~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~ 77 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALSGE-----------SVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTR 77 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC-----------EEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC-----------eeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHh
Confidence 345677888999999999999998877766442 89999999999999999999986 434455555544
Q ss_pred CCcchhhHhHhhcCCCc
Q 004878 697 EYMERHTVSKLIGSPPG 713 (725)
Q Consensus 697 E~~~k~~vs~liG~ppg 713 (725)
|. +.+.++|...+
T Consensus 78 -~~---t~~dL~G~~~~ 90 (500)
T 3nbx_X 78 -FS---TPEEVFGPLSI 90 (500)
T ss_dssp -TC---CHHHHHCCBC-
T ss_pred -cC---CHHHhcCcccH
Confidence 32 34788886433
No 147
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.36 E-value=5.6e-07 Score=96.70 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=53.4
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
..++||++++..+.........|...+ .++||+||||||||++|+++|+.+ +...+++.++.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~----~~vLl~GppGtGKT~la~~la~~l-~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAG----RAVLIAGQPGTGKTAIAMGMAQAL-GPDTPFTAIAGSEIFS 110 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTT----CEEEEEESTTSSHHHHHHHHHHHH-CSSCCEEEEEGGGGSC
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCC----CEEEEECCCCCCHHHHHHHHHHHh-cccCCcccccchhhhh
Confidence 458999999998877776666554432 389999999999999999999998 4445788888877554
No 148
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.34 E-value=5e-07 Score=83.33 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhhh
Q 004878 171 FSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ 234 (725)
Q Consensus 171 ~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~~ 234 (725)
||+.++++|+.|..+|+++|+.+|+++|||+||++++ .+.++|+++|+|.+.++..+...+.
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~--~~~~iL~~~g~~~~~l~~~l~~~l~ 63 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIE 63 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCH--HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCc--hHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999765 3999999999999999998877663
No 149
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=1.3e-06 Score=98.34 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=60.0
Q ss_pred ceeCcHHHHHHHHHHHHHh----hcCCCCCCC----CCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRS----RVGLKDPNR----PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~----~~gl~~p~r----p~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|++++++.+...+... ..|++.+++ +..++||+||||||||++|+++|+++ +..++.++.+++..+
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~ 116 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSK 116 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCH
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchH
Confidence 4889999999998887542 234444332 23489999999999999999999998 678999999999887
Q ss_pred hhHhHhhc
Q 004878 702 HTVSKLIG 709 (725)
Q Consensus 702 ~~vs~liG 709 (725)
..+...++
T Consensus 117 ~~~~~~i~ 124 (516)
T 1sxj_A 117 TLLNAGVK 124 (516)
T ss_dssp HHHHHTGG
T ss_pred HHHHHHHH
Confidence 66655554
No 150
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.28 E-value=1.5e-06 Score=84.03 Aligned_cols=120 Identities=12% Similarity=0.125 Sum_probs=69.5
Q ss_pred HHHHHHHHHhc-CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHH
Q 004878 298 EIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (725)
Q Consensus 298 ~i~~l~~~L~~-~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~ 376 (725)
-+..+..++.. +.+++++|+||||||||+++.++++.+. + +++.+.- ... .+. ++
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~-g---------~i~~fan------s~s--~f~------l~ 99 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ-G---------AVISFVN------STS--HFW------LE 99 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT-C---------EECCCCC------SSS--CGG------GG
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC-C---------CeeeEEe------ccc--hhh------hc
Confidence 35555555554 2345799999999999999999999882 1 2221100 000 000 11
Q ss_pred HHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC---------------CeEEEEeccchhhhhhhcc
Q 004878 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEK 441 (725)
Q Consensus 377 ~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~at~~~~~~~~~~l 441 (725)
.+ .+..|++|||++.-. ...+...++.+++.. ...+|.|||.+-.. ...
T Consensus 100 ~l--~~~kIiiLDEad~~~------------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~--~~~ 163 (212)
T 1tue_A 100 PL--TDTKVAMLDDATTTC------------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK--DNR 163 (212)
T ss_dssp GG--TTCSSEEEEEECHHH------------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS--SSS
T ss_pred cc--CCCCEEEEECCCchh------------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc--ccc
Confidence 11 113388999997441 122333445554432 34788888875321 133
Q ss_pred cHHHHcccceEEecCC
Q 004878 442 DKALARRFQPVLISEP 457 (725)
Q Consensus 442 d~~L~~Rf~~I~i~~P 457 (725)
-+.|.+|+..+.++.|
T Consensus 164 ~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 164 WPYLESRITVFEFPNA 179 (212)
T ss_dssp CHHHHTSCEEEECCSC
T ss_pred hhhhhhhEEEEEcCCC
Confidence 4789999988888865
No 151
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.27 E-value=5.6e-06 Score=104.32 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=36.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHT 703 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~ 703 (725)
+++||||||||||+||.++|.+....+...+.++..+.++.-.
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~ 1471 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1471 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH
Confidence 8999999999999999999998766667788888887765444
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.27 E-value=1.3e-06 Score=92.71 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=56.3
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhh
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLI 708 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~li 708 (725)
.++|+++++..+...+...+..- .+..++||+||||||||++|+++|+.+ +.+|+.++.+.+.....+..++
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~----~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~~~~~ 101 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRN----ECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKSGDLAAIL 101 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTT----SCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhcC----CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccchhHHHHHH
Confidence 48999999999998887664321 122489999999999999999999997 6689999998776555544444
No 153
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.24 E-value=5.6e-07 Score=92.89 Aligned_cols=63 Identities=32% Similarity=0.552 Sum_probs=45.3
Q ss_pred eeCcHHHHHHHHHHHHH-------hhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 631 VIGQDEAVAAISRAVKR-------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~-------~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
++|+++++..+...... ...++..|. +++|+||||||||+|+++||..+ ...++.++++++.+
T Consensus 42 i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~----gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 42 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPK----GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE 111 (278)
T ss_dssp SSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCC----EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHH
T ss_pred hCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCC----eEEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHH
Confidence 55666666655544432 233454442 69999999999999999999997 56799999876643
No 154
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.22 E-value=4.3e-07 Score=93.43 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=46.5
Q ss_pred HhcCceeCcHHHHHHHHHH----HHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccC
Q 004878 626 QLKKRVIGQDEAVAAISRA----VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (725)
Q Consensus 626 ~L~~~v~Gq~~a~~~i~~~----v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE 697 (725)
.+...++|++++++.+... +...+.. ...+..++||+||||||||++|+++|+.+ +.+++.++.++
T Consensus 30 ~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~ 99 (272)
T 1d2n_A 30 YIMNGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPD 99 (272)
T ss_dssp TCTTCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGG
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHH
Confidence 3445677887777666553 2222211 11233599999999999999999999997 66899998775
No 155
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.18 E-value=1.5e-06 Score=93.79 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=64.6
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC--------CCceEEecccCCc-
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--------ESSMLRLDMSEYM- 699 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~--------~~~lIrid~sE~~- 699 (725)
..++|+++.++.+...+.....+-. + ..++|+||||||||++|+++++.+... +..++.+++++..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~-~----~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEV-K----FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCC-C----CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC-C----CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC
Confidence 5689999999999988876544321 1 289999999999999999999987332 5578999987654
Q ss_pred chh-----hHhHhhcCCCccccccc
Q 004878 700 ERH-----TVSKLIGSPPGYVGVGE 719 (725)
Q Consensus 700 ~k~-----~vs~liG~ppgyvG~~e 719 (725)
..+ -+..+.|.++++.|.+.
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~ 119 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINL 119 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCT
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCH
Confidence 322 25566688888888754
No 156
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.16 E-value=5.8e-07 Score=82.90 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=46.7
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|+++++..+...+..... .+ .++||+||||||||++|++|++.. . +|+.+|++++.+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~----~~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~~ 65 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RT----SPVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLID 65 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CS----SCEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC---CC----CcEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCChH
Confidence 378999999888888765431 11 279999999999999999999986 3 7999999987553
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.11 E-value=3.6e-06 Score=88.57 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=54.1
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKL 707 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~l 707 (725)
..++|+++++..+...+.....+-. +..++||+||||||||++|+++++.+ +.+++.++++.+.....+...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~----~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~~ 83 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKE----PLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAAI 83 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCS----CCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCC----CCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHHH
Confidence 3488999999998888765432111 11378999999999999999999998 568999999887654444333
No 158
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.10 E-value=4.4e-06 Score=88.62 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=50.3
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhH
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSK 706 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~ 706 (725)
++||+.+++.+...+...+.. +.+...++|+||||||||+||++||+++ +.++....++-+.....+..
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCSHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhcCHHHHHH
Confidence 678999999998888654221 1122379999999999999999999998 45666667766654444433
No 159
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.05 E-value=5.6e-06 Score=80.67 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=68.9
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCC-CeEEEeehhhhhcccc-----------ccch--HHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS-KRIMSLDMGLLMAGAK-----------ERGE--LEARVTTLISEI 378 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~-~~l~~ld~~~l~~g~~-----------~~g~--~~~~l~~~~~~~ 378 (725)
-.+++|+||+|||+++..++.....-+ +. ..+ ..++..++..+..+.. ..++ ....+..++. .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~-~~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~ 83 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFK-PD-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-K 83 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGS-CC-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-S
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhc-cc-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-c
Confidence 358999999999999987655431000 00 113 4444444443321110 0000 0011222211 1
Q ss_pred HhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccchhhhhhhcccHHHHcccc-eEEecCC
Q 004878 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEP 457 (725)
Q Consensus 379 ~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~-~I~i~~P 457 (725)
....+.||+|||++.+++..... .....+...|.. -....+.+|.++++.. .++.++++|+. .+.+..|
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~----~e~~rll~~l~~-~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAG----SKIPENVQWLNT-HRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTT----CCCCHHHHGGGG-TTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEEC
T ss_pred cccCceEEEEEChhhhccCcccc----chhHHHHHHHHh-cCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCc
Confidence 23457899999999997643221 111222222221 1123456677777765 78889999984 5666665
Q ss_pred C
Q 004878 458 S 458 (725)
Q Consensus 458 s 458 (725)
.
T Consensus 154 ~ 154 (199)
T 2r2a_A 154 K 154 (199)
T ss_dssp S
T ss_pred c
Confidence 3
No 160
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.01 E-value=6.1e-06 Score=91.65 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
.||+.++++|+.|..+|+++||.+|+++|||+||++++++.+.++|+.+|+|.+.++..+...+
T Consensus 5 ~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l 68 (468)
T 3pxg_A 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI 68 (468)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred hhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999999999877655
No 161
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.99 E-value=5.8e-06 Score=91.05 Aligned_cols=58 Identities=28% Similarity=0.504 Sum_probs=47.5
Q ss_pred CceeCcHHHH---HHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 629 KRVIGQDEAV---AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 629 ~~v~Gq~~a~---~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
..++||+.++ ..+...+...+. .++||+||||||||++|++||+.+ +..|+.++....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~---------~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~ 86 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHL---------HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTS 86 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCC---------CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTC
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCC---------cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccC
Confidence 3489999999 677777776542 289999999999999999999997 678888887643
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.99 E-value=3.6e-06 Score=80.61 Aligned_cols=63 Identities=29% Similarity=0.455 Sum_probs=48.0
Q ss_pred cCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC-------CCCceEEecccCCc
Q 004878 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG-------SESSMLRLDMSEYM 699 (725)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg-------~~~~lIrid~sE~~ 699 (725)
...++|+++.++.+...+... .+ .++||+||||||||++|+++++.+.. .+..++.++++++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~-----~~----~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR-----TK----NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV 90 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS-----SS----CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH
T ss_pred ccccccchHHHHHHHHHHhcC-----CC----CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh
Confidence 456899999888887765431 11 37999999999999999999999743 24567888876654
No 163
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.98 E-value=9e-06 Score=85.64 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=49.2
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
..++|+++++..+...+...+ .| ..+||+||||||||++|+++|+.+ +..++.++.+++.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~----~~----~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~ 85 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK----IP----HIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK 85 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC----CC----SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC----CC----eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC
Confidence 348899999999988887322 11 378899999999999999999998 6789999998765
No 164
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.97 E-value=4.4e-06 Score=79.74 Aligned_cols=63 Identities=25% Similarity=0.416 Sum_probs=47.8
Q ss_pred cCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC-------CCCceEEecccCCc
Q 004878 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG-------SESSMLRLDMSEYM 699 (725)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg-------~~~~lIrid~sE~~ 699 (725)
...++|+++.+..+...+... ...++||+||||||||++|+++++.+.. .+..++.++++.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~---------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR---------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLI 90 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS---------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC---------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhh
Confidence 456899999888887666431 1137899999999999999999999744 24568888876553
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=7.3e-06 Score=87.08 Aligned_cols=70 Identities=30% Similarity=0.517 Sum_probs=50.8
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC--CceEEecccCCcchhhHhHh
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--SSMLRLDMSEYMERHTVSKL 707 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~--~~lIrid~sE~~~k~~vs~l 707 (725)
.++||++++..+...+...+. .++||+||||||||++|+++|+.+++.. ..++.++.++......+-..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~---------~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~ 96 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKL---------PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQ 96 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCC---------CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTH
T ss_pred HhcCcHHHHHHHHHHHhcCCC---------ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHH
Confidence 378999999999888775321 1589999999999999999999987643 23677777764333333333
Q ss_pred h
Q 004878 708 I 708 (725)
Q Consensus 708 i 708 (725)
|
T Consensus 97 i 97 (340)
T 1sxj_C 97 I 97 (340)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.96 E-value=1e-05 Score=83.82 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=59.1
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh--hhhhccccccchHHHHHHHHHHHHHhcCCeEEEE
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM--GLLMAGAKERGELEARVTTLISEIQKSGDVILFI 388 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~--~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~I 388 (725)
+..++|+||||+|||+++..++.. .. .++.++++ .+.+.. ...+.+..+..+.+.+.+.+ +|||
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~G---------~~VlyIs~~~eE~v~~--~~~~le~~l~~i~~~l~~~~--LLVI 188 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-LG---------GKDKYATVRFGEPLSG--YNTDFNVFVDDIARAMLQHR--VIVI 188 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-HH---------TTSCCEEEEBSCSSTT--CBCCHHHHHHHHHHHHHHCS--EEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-CC---------CCEEEEEecchhhhhh--hhcCHHHHHHHHHHHHhhCC--EEEE
Confidence 345799999999999999999987 21 12222222 111111 11345666666666666554 9999
Q ss_pred ccchhhhhCCCCCCCCCCCcHHHHHH---HhhhhcCCCeEEEEeccch
Q 004878 389 DEVHTLIGSGTVGRGNKGTGLDISNL---LKPSLGRGELQCIASTTQD 433 (725)
Q Consensus 389 DEid~l~~~~~~~~~~~~~~~~~~~~---L~~~l~~~~v~vI~at~~~ 433 (725)
|+++.+................+... |..++.+..+.+|.++++.
T Consensus 189 DsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 189 DSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp ECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred ecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 99999854321100000012223333 3334445567777777754
No 167
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.94 E-value=6.8e-06 Score=85.83 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=47.3
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC-------CCceEEecccCCcchhh
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS-------ESSMLRLDMSEYMERHT 703 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~-------~~~lIrid~sE~~~k~~ 703 (725)
+.+.++-+..|...+...-.+-.. .+++++||||||||++++++++.+... ...++.||+..+.+.+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~-----~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQN-----KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-----CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCC-----CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 344555566666666554333222 289999999999999999999998321 23689999998887654
Q ss_pred H
Q 004878 704 V 704 (725)
Q Consensus 704 v 704 (725)
+
T Consensus 97 ~ 97 (318)
T 3te6_A 97 L 97 (318)
T ss_dssp H
T ss_pred H
Confidence 4
No 168
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.92 E-value=1.2e-05 Score=79.01 Aligned_cols=68 Identities=32% Similarity=0.536 Sum_probs=50.5
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC--CCceEEecccCCcchhhHhH
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERHTVSK 706 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~--~~~lIrid~sE~~~k~~vs~ 706 (725)
.++|++++++.+...+...+ + .++||+||||||||++|+++++.+... ...++.++.++......+..
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKN--------I-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--------C-CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHH
T ss_pred HHcCcHHHHHHHHHHHhCCC--------C-CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHH
Confidence 47899999998888776431 1 259999999999999999999986432 23578888877665444433
No 169
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.92 E-value=6e-05 Score=72.04 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=40.3
Q ss_pred hcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEec--cchhhhhhhcccHHHHcc--cceEEec
Q 004878 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST--TQDEHRTQFEKDKALARR--FQPVLIS 455 (725)
Q Consensus 380 ~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at--~~~~~~~~~~ld~~L~~R--f~~I~i~ 455 (725)
...+.+|++||++.... -.....+.+..++.+....+|.++ +.+. ..-..+.+| ...+++.
T Consensus 97 ~~~p~llilDEigp~~~----------ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~-----~~~~~i~~r~~~~i~~~~ 161 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMEL----------FSKKFRDLVRQIMHDPNVNVVATIPIRDVH-----PLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HCTTCEEEECCCSTTGG----------GCHHHHHHHHHHHTCTTSEEEEECCSSCCS-----HHHHHHHTCTTCEEEECC
T ss_pred ccCCCEEEEeCCCCccc----------CCHHHHHHHHHHHhcCCCeEEEEEccCCCc-----hHHHHHHhcCCcEEEEec
Confidence 45678999999764421 133456677777766666455555 2221 223456666 4577777
Q ss_pred CCCHHHH
Q 004878 456 EPSQEDA 462 (725)
Q Consensus 456 ~Ps~ee~ 462 (725)
..+.++.
T Consensus 162 ~~~r~~~ 168 (178)
T 1ye8_A 162 PENRDVI 168 (178)
T ss_dssp TTTTTTH
T ss_pred CcCHHHH
Confidence 7765543
No 170
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.90 E-value=6.7e-05 Score=85.86 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=40.2
Q ss_pred hcCCCcccccHHHHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHH
Q 004878 286 EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 286 ~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~ 334 (725)
|.....+|||+.++.+|.+.+.. ....-++|+|++|+|||+||..++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 34556799999999999999974 23345789999999999999998754
No 171
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=7.7e-06 Score=85.93 Aligned_cols=61 Identities=36% Similarity=0.592 Sum_probs=47.8
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC--CceEEecccCC
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--SSMLRLDMSEY 698 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~--~~lIrid~sE~ 698 (725)
..++||+++++.+...+...+ + .++||+||||||||++|+++|+.+++.. ..++.++.++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--------M-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------C-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--------C-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 348999999999988776532 1 2699999999999999999999975432 34778887754
No 172
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.88 E-value=1.2e-05 Score=78.45 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=35.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
+++|+||||||||++|++|++.+...+..++.++.+++.+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 8999999999999999999999876666788888887654
No 173
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.88 E-value=4.7e-05 Score=76.98 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcC-C-CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 298 EIQRIIQILCRR-T-KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 298 ~i~~l~~~L~~~-~-~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
....+..++... . +++++|+||||||||.++.+||..+
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344566666664 3 4679999999999999999999875
No 174
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.84 E-value=6.8e-05 Score=83.05 Aligned_cols=61 Identities=15% Similarity=0.332 Sum_probs=42.3
Q ss_pred hhhhhhhhhhcCCCccc-ccHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHHhc
Q 004878 277 CVDLTARASEELIDPVI-GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (725)
Q Consensus 277 ~~~l~~~~~~~~l~~li-G~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~ 338 (725)
..+|.++++|-.|+.+- +|.+.+..+...+.... .+++|.|++|||||+++..++..+...
T Consensus 11 ~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ----------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45788899999999886 67778887777776644 389999999999999999999988653
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.81 E-value=6.7e-06 Score=86.07 Aligned_cols=62 Identities=34% Similarity=0.581 Sum_probs=46.8
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC--CceEEecccCCcc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE--SSMLRLDMSEYME 700 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~--~~lIrid~sE~~~ 700 (725)
.++|++++++.+...+... +. .++||+||||||||++|+++|+.+++.. ..++.++.++...
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERK--------NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTT--------CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred HHhCCHHHHHHHHHHHhCC--------CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 3789999888887665431 11 2599999999999999999999986543 3578888876543
No 176
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.79 E-value=1.9e-05 Score=84.83 Aligned_cols=84 Identities=14% Similarity=0.230 Sum_probs=57.8
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC------CCCceEEecccCCcchh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG------SESSMLRLDMSEYMERH 702 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg------~~~~lIrid~sE~~~k~ 702 (725)
..++|+++.++.+...+.....+- .+ .+++|+||||||||++|+++++.+.. .+..++.++.++..+.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~-~~----~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGE-KP----SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSC-CC----CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCC-CC----CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH
Confidence 458899998888887775432121 11 38999999999999999999998732 25678999988776543
Q ss_pred h----HhHhhcCCCccccc
Q 004878 703 T----VSKLIGSPPGYVGV 717 (725)
Q Consensus 703 ~----vs~liG~ppgyvG~ 717 (725)
. +..-+|.+..+.|.
T Consensus 94 ~~~~~l~~~l~~~~~~~~~ 112 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGL 112 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCC
T ss_pred HHHHHHHHHhCCCCCCCCC
Confidence 2 23334555444443
No 177
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=1.1e-05 Score=85.94 Aligned_cols=63 Identities=33% Similarity=0.530 Sum_probs=47.6
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcC---CCCceEEecccCCcc
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG---SESSMLRLDMSEYME 700 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg---~~~~lIrid~sE~~~ 700 (725)
..++|++++++.+...+...+ + .++||+||||||||++|+++|+.+.+ ....++.++.++...
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 102 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--------L-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG 102 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--------C-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC
T ss_pred HHhhCCHHHHHHHHHHHhcCC--------C-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc
Confidence 458999999988877764321 1 25999999999999999999999742 134678888877543
No 178
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=1.3e-05 Score=76.61 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=33.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc-CCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYF-GSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lf-g~~~~lIrid~sE~~~k 701 (725)
+++|+||||||||+|+++|+..+. ..+..++.++++++.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 899999999999999999999985 23445677888777654
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.76 E-value=2.9e-05 Score=77.42 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=35.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
+++|+||||||||++|+++|+.+...+..++.++.+++.+.
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI 94 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 89999999999999999999998655567888998887653
No 180
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=1.2e-05 Score=84.30 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=50.1
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC--CCceEEecccCCcchhhHh
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERHTVS 705 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~--~~~lIrid~sE~~~k~~vs 705 (725)
..++|++++++.+...+...+ + ..+||+||||||||++|+++|+.+++. ...++.++.++......+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 90 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--------M-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVR 90 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--------C-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--------C-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHH
Confidence 348899999999988876421 1 149999999999999999999997442 2347888887754433333
No 181
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=7.1e-05 Score=80.52 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=53.1
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC-CCceEEecccCCcch
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS-ESSMLRLDMSEYMER 701 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~-~~~lIrid~sE~~~k 701 (725)
..++|+++.++.+...+.....|-. + .+ ..++|+||||||||++++++++.+... +..++.++.+.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~-~-~~-~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPG-H-HY-PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT-S-SC-CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC-C-CC-CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 4588999999999888876543311 1 00 179999999999999999999998654 467899998776643
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.63 E-value=3.3e-05 Score=81.36 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=35.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
+++|+||||||||++|++|++.+...+..++.++.+++.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 8999999999999999999999865566799999887754
No 183
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.62 E-value=0.0004 Score=78.70 Aligned_cols=41 Identities=29% Similarity=0.306 Sum_probs=35.3
Q ss_pred cccHHHHHHHHHHHhcC---CCCCceEEcCCCChHHHHHHHHHH
Q 004878 293 IGRETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAI 333 (725)
Q Consensus 293 iG~~~~i~~l~~~L~~~---~~~~iLL~Gp~G~GKT~la~~la~ 333 (725)
+||++++.+|.+.|... ...-+.|+|+.|+||||||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999999998764 234567999999999999999986
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=2.1e-05 Score=83.75 Aligned_cols=51 Identities=22% Similarity=0.394 Sum_probs=37.7
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSES 688 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~ 688 (725)
.++||++++..+...+. . .++.. .+||+||||||||+++++||+.+++...
T Consensus 15 ~~vg~~~~~~~l~~~~~------~-~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~ 65 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSD------Q-PRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGV 65 (354)
T ss_dssp GCCSCHHHHHHHHTTTT------C-TTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTC
T ss_pred HhcCCHHHHHHHHHHHh------h-CCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 37899988887765541 1 11211 4999999999999999999998766543
No 185
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.59 E-value=2.8e-05 Score=74.85 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=20.5
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHh
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
-.+++||+|+||||++..++..+..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999877776643
No 186
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.58 E-value=6.6e-05 Score=74.51 Aligned_cols=48 Identities=35% Similarity=0.576 Sum_probs=39.4
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
..++|++++++.+...+...+. + ..++|+||||||||++|+++++.+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~----~----~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI----H----HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC----C----SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3488999999999888875321 1 2789999999999999999999873
No 187
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.57 E-value=3.2e-05 Score=82.11 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=33.7
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|+++++..+........ .+++||+||||||||++|+++|+.+
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~---------~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPG---------IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGG---------GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hccChHHHHHHHHHHhhCCC---------CceEEEECCCCccHHHHHHHHHHhC
Confidence 37889887766543332111 1379999999999999999999987
No 188
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=9.1e-05 Score=77.20 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh--cC-CCCceEEeccc
Q 004878 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY--FG-SESSMLRLDMS 696 (725)
Q Consensus 633 Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l--fg-~~~~lIrid~s 696 (725)
||+++++.+...++..+ . ..+|||||||||||++|+++|+.+ +. ...+++.++.+
T Consensus 1 g~~~~~~~L~~~i~~~~----~-----~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE----G-----ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp ---CHHHHHHHHHHTCS----S-----EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred ChHHHHHHHHHHHHCCC----C-----cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 78889999988887543 1 289999999999999999999974 21 24568888876
No 189
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.55 E-value=3.8e-05 Score=80.26 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=34.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc-CCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYF-GSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lf-g~~~~lIrid~sE~~~ 700 (725)
+++|+||||||||.||.+||+.+. ..+..++.+..+++++
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 899999999999999999999986 5556788888887654
No 190
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.55 E-value=4.1e-05 Score=82.15 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=48.3
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC---CCceEEecccCCcc
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS---ESSMLRLDMSEYME 700 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~---~~~lIrid~sE~~~ 700 (725)
..++|+++.++.+...+.....+- .+ ..++|+||||||||++++++++.+... +..++.+++++...
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~-~~----~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREE-KP----NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTC-CC----CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC-CC----CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 447888888888877665432221 11 289999999999999999999987322 45688888765443
No 191
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.54 E-value=9.7e-05 Score=71.40 Aligned_cols=25 Identities=32% Similarity=0.715 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFG 685 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg 685 (725)
++|||||||||||++|.+||+.+.|
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7999999999999999999999844
No 192
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.53 E-value=0.00055 Score=85.08 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=40.9
Q ss_pred hhcCCCcccccHHHHHHHHHHHhcC--CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 285 SEELIDPVIGRETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 285 ~~~~l~~liG~~~~i~~l~~~L~~~--~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
-|.....++||++++++|.+.|... ...-+.|+|+.|+|||+||+.+++..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 4455667999999999999999642 23346799999999999999887653
No 193
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.51 E-value=0.00019 Score=75.91 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=38.3
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~ 686 (725)
.-||++++..+...++..+. | ..+||+||||||||++|+++|+.++..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~----~----~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRG----H----HALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCC----C----SEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCchHHHHHHHHHHHHcCCc----c----eeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 35788888888887765431 1 279999999999999999999998754
No 194
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.50 E-value=9.3e-05 Score=79.23 Aligned_cols=48 Identities=35% Similarity=0.576 Sum_probs=39.9
Q ss_pred CceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
..++||+++++.+...+...+. + ..+||+||||||||++|+++|+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~----~----~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI----H----HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC----C----SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred hhccCcHHHHHHHHHHHHhCCC----C----eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999988875431 1 2789999999999999999999984
No 195
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.47 E-value=9.4e-05 Score=84.81 Aligned_cols=58 Identities=28% Similarity=0.362 Sum_probs=45.7
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.++||+.+++.+...+.... .+||+||||||||++|++||..+.......+.+++..+
T Consensus 42 ~i~G~~~~l~~l~~~i~~g~-----------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQKR-----------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTTC-----------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred eEECchhhHhhccccccCCC-----------EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 38999999999988877542 79999999999999999999998554434555554433
No 196
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.45 E-value=6.1e-05 Score=82.87 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=33.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCC--CCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~--~~~lIrid~sE~~~ 700 (725)
+++||||||||||+||++||+.+... +..++.++.+++.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 79999999999999999999997432 45688899887754
No 197
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.43 E-value=7.7e-05 Score=69.07 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=35.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|+||+|+|||+|+++++..+...+.+.+.+++.++...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT 78 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH
Confidence 78999999999999999999998655556889999988764
No 198
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.39 E-value=0.0064 Score=68.84 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCccCHHHHHHHhhhcCCcchhHHHHhhcCCHHHHHHHHHHhh
Q 004878 172 SISTKRVFEAAV-EYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (725)
Q Consensus 172 s~~~~~vl~~A~-~~a~~~g~~~V~~~hlllall~~~~~~a~~iL~~~gv~~~~l~~~~~~~~ 233 (725)
..+++..+..++ ..+...||.|+..+.|+-...+ -++++.+.+.+.+....
T Consensus 71 ~~R~~a~~~~~l~~~~~~~Ght~~~~~~l~~~~~~-----------~l~~~~~~~~~~~~~~~ 122 (574)
T 3e1s_A 71 PRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVH-----------YTRVTPGQARLAVETAV 122 (574)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEHHHHHHHHHH-----------HHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEeecHHHHHHHHHH-----------HhCCCHHHHHHHHHHHH
Confidence 357888899998 7888899999999987665542 23678877776665544
No 199
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.39 E-value=0.00033 Score=75.58 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=59.7
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhc
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIG 709 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG 709 (725)
.++|+..++..+...+.... ... ..+|++|++|||||++|++|.......+.+|+.+|++.+.+...-+.|+|
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a----~~~---~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg 210 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS----CAE---CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFG 210 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT----TCC---SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHC
T ss_pred hhhhccHHhhHHHHHHHHhc----CCC---CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcC
Confidence 35666666666666655432 111 26799999999999999999998766678899999999999888899999
Q ss_pred CCCc
Q 004878 710 SPPG 713 (725)
Q Consensus 710 ~ppg 713 (725)
...|
T Consensus 211 ~~~g 214 (387)
T 1ny5_A 211 YEKG 214 (387)
T ss_dssp BCTT
T ss_pred CCCC
Confidence 6544
No 200
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.38 E-value=0.00038 Score=68.83 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
..+..++|+||+|+||||+++.++..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456688999999999999999997664
No 201
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.38 E-value=2.1e-05 Score=89.71 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=44.9
Q ss_pred HHhHHHHhcCceeCcHHHHHHHHHHHHHhh-cCCCC-CCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSR-VGLKD-PNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~-~gl~~-p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
+..+.+.+...|+||++++..+...+.... ..+.+ ..+...++||+||||||||++|++||+.+
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 456778889999999998887754432110 00111 11122389999999999999999999986
No 202
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.36 E-value=0.00063 Score=86.05 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=56.4
Q ss_pred cCCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-------cc-------ccccchHHHHHHH
Q 004878 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AG-------AKERGELEARVTT 373 (725)
Q Consensus 308 ~~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~-------~g-------~~~~g~~~~~l~~ 373 (725)
-.++.+++|+||||||||+||.+++...... +.++..+++.... .| .......+..+..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHH
Confidence 3567889999999999999999999887542 5566666655321 01 0011233444555
Q ss_pred HHHHHHhcCCeEEEEccchhhhh
Q 004878 374 LISEIQKSGDVILFIDEVHTLIG 396 (725)
Q Consensus 374 ~~~~~~~~~~~IL~IDEid~l~~ 396 (725)
+...++...+.+||||+++.+++
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHhcCCCCEEEEcChhHhcc
Confidence 55566677899999999987765
No 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.36 E-value=0.0012 Score=78.26 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=36.1
Q ss_pred ccccHHHHHHHHHHHhc-CCCCCceEEcCCCChHHHHHHHHHH
Q 004878 292 VIGRETEIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAI 333 (725)
Q Consensus 292 liG~~~~i~~l~~~L~~-~~~~~iLL~Gp~G~GKT~la~~la~ 333 (725)
.+||++++.+|.+.|.. ....-+.|+|+.|+||||||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 49999999999999876 3344568999999999999999985
No 204
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.35 E-value=0.00042 Score=86.65 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh----c---c---ccccch----HHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----A---G---AKERGE----LEARVTTLIS 376 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~----~---g---~~~~g~----~~~~l~~~~~ 376 (725)
++.++|+||||||||++|++++.+.... +-..+.+++.... . | .+..++ -+..++.++.
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~~~~-------g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~ 1154 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1154 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhc-------CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHH
Confidence 3448999999999999999999877543 3333444443311 0 1 112233 5677877887
Q ss_pred HHHhcCCeEEEEccchhhhhC
Q 004878 377 EIQKSGDVILFIDEVHTLIGS 397 (725)
Q Consensus 377 ~~~~~~~~IL~IDEid~l~~~ 397 (725)
.+++..++++|+|+++.|++.
T Consensus 1155 ~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1155 LARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHTCCSEEEESCGGGCCCH
T ss_pred HHHhcCCeEEEeCchHhcCcc
Confidence 788888999999999998875
No 205
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.32 E-value=0.00051 Score=67.86 Aligned_cols=26 Identities=23% Similarity=0.010 Sum_probs=22.0
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
.-++++|++|+||||++..++..+..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 34678899999999999999988754
No 206
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.27 E-value=0.00011 Score=74.25 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHH
Q 004878 660 AAMLFCGPTGVGKTELAKSLAAC 682 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~ 682 (725)
.+++||||||||||++|++||+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 38999999999999999999997
No 207
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.17 E-value=0.00045 Score=67.82 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.6
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAI 333 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~ 333 (725)
..+.-++|+||+|+|||+++..++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445578999999999999999998
No 208
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.15 E-value=0.0003 Score=68.32 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=25.1
Q ss_pred CCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 651 GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 651 gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
|+..+.+|. .++|.||||+|||++|+.||+.+
T Consensus 13 ~~~~~~~~~-~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 13 GLVPRGSHM-RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp ---CCCSCC-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCCCCCe-EEEEECCCCCCHHHHHHHHHHHh
Confidence 344455554 78999999999999999999987
No 209
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.12 E-value=0.00067 Score=69.99 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.++|.||||+|||++|+.|++.+ ....+.|+.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~ 66 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDN 66 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT---TTCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 78899999999999999999986 234677765
No 210
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.12 E-value=0.0031 Score=61.94 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=30.5
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
+.+.++++.|++||||||++-.++..+... |.+++.+++
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-------G~~V~v~d~ 42 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-------GVRVMAGVV 42 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCCEEEEEe
Confidence 345678999999999999999999988653 556655554
No 211
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.11 E-value=0.0003 Score=67.21 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEe
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIri 693 (725)
.++|+||||||||++|+.||+.+ +..+|..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l---~~~~i~~ 36 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT---KRILYDS 36 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEC
Confidence 78999999999999999999998 4445443
No 212
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.10 E-value=0.00029 Score=66.81 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.++|.||||+|||++|++||+.+ +..++.+++.++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 68899999999999999999997 456777665433
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.00034 Score=67.90 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.++|+||||||||++|+.||+.+ +..++ |+.++
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l---~~~~i--~~d~~ 59 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL---NVPFI--DLDWY 59 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEE--EHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEE--cchHH
Confidence 78999999999999999999998 44454 44444
No 214
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.06 E-value=0.0007 Score=68.45 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=29.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
..++|.||||+|||++|+.|++.+ +...+.+|+-.+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHH
Confidence 378999999999999999999997 334677777665
No 215
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.02 E-value=0.00047 Score=74.68 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=49.5
Q ss_pred CceeCcHHHHHHHHHHH-HHhhcCCCCCCCCCeeEEE--EcCCCCcHHHHHHHHHHHhcC------CCCceEEecccCCc
Q 004878 629 KRVIGQDEAVAAISRAV-KRSRVGLKDPNRPTAAMLF--CGPTGVGKTELAKSLAACYFG------SESSMLRLDMSEYM 699 (725)
Q Consensus 629 ~~v~Gq~~a~~~i~~~v-~~~~~gl~~p~rp~~~iLl--~GPpGtGKT~lAkaLA~~lfg------~~~~lIrid~sE~~ 699 (725)
..++|.++.++.+...+ .....|.... + ..+++ +||||||||++++++++.+-. .+..++.++..+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~--~-~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLS--D-VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBC--C-EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCC--C-CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 45788888888888887 6654442111 1 37888 999999999999999998732 13457888875554
Q ss_pred ch
Q 004878 700 ER 701 (725)
Q Consensus 700 ~k 701 (725)
..
T Consensus 99 ~~ 100 (412)
T 1w5s_A 99 NL 100 (412)
T ss_dssp SH
T ss_pred CH
Confidence 43
No 216
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.02 E-value=0.00092 Score=63.17 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=29.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
..++|.||||+|||++++.|+..+ | .+.+|+-++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~-g----~~~i~~d~~~~ 44 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL-H----AAFLDGDFLHP 44 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH-T----CEEEEGGGGCC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh-C----cEEEeCccccc
Confidence 378899999999999999999986 3 56777776654
No 217
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.01 E-value=0.0051 Score=68.74 Aligned_cols=142 Identities=15% Similarity=0.233 Sum_probs=85.8
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh--hh--cc-----ccccch---HHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL--LM--AG-----AKERGE---LEARVTTLISEI 378 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~--l~--~g-----~~~~g~---~~~~l~~~~~~~ 378 (725)
..|+|+.|.+|+|||++++.+...+.....|. ..+++.+|... +. .+ .....+ ....++.+..++
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999988876543343 56777777543 11 01 000011 111111111111
Q ss_pred H-------------------------------------------------hcCCeEEEEccchhhhhCCCCCCCCCCCcH
Q 004878 379 Q-------------------------------------------------KSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409 (725)
Q Consensus 379 ~-------------------------------------------------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~ 409 (725)
. .-+..+|+|||++.++... ..
T Consensus 291 erR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~---------~~ 361 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIV---------GK 361 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHT---------CH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhh---------hH
Confidence 0 0123689999999886531 22
Q ss_pred HHHHHHhhhhcCC---CeEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCHHHHHHHHH
Q 004878 410 DISNLLKPSLGRG---ELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILL 467 (725)
Q Consensus 410 ~~~~~L~~~l~~~---~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ee~~~IL~ 467 (725)
++...|..+...+ .+.+|.+|..+. .-.++..++.-| ..|.+...+..+...||.
T Consensus 362 ~~~~~L~~Iar~GRa~GIhLIlaTQRPs---~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 362 KVEELIARIAQKARAAGIHLILATQRPS---VDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHHHHHHHHHCTTTTEEEEEEESCCC---TTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEecCcc---cccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4555565555533 477777776653 124667788877 468888888888777763
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.97 E-value=0.018 Score=62.61 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=49.5
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-------------c-----ccccchHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------------G-----AKERGELEARVT 372 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-------------g-----~~~~g~~~~~l~ 372 (725)
+.-++++|++|+||||++..||..+... +.++..+++..... + .....+....+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHH
Confidence 3457899999999999999999988653 55555555432110 0 011123344456
Q ss_pred HHHHHHHhcCCeEEEEccchhh
Q 004878 373 TLISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 373 ~~~~~~~~~~~~IL~IDEid~l 394 (725)
..++.+...+..+++||....+
T Consensus 173 ~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHhCCCCEEEEECCCcc
Confidence 6677777666679999977554
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.96 E-value=0.0017 Score=64.60 Aligned_cols=87 Identities=18% Similarity=0.114 Sum_probs=48.7
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhh---------h--cccc--------------c
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL---------M--AGAK--------------E 363 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l---------~--~g~~--------------~ 363 (725)
..+..++|+||+|+|||+++..++....... .....+..+++++.... . .+.. .
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~-~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPI-DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCG-GGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCch-hcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 3455688999999999999999998642100 00001344555554321 0 0000 0
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEccchhhhh
Q 004878 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIG 396 (725)
Q Consensus 364 ~g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~ 396 (725)
..+....+..+.+.+....+.+|+||++..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 011112233344444556788999999998864
No 220
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.92 E-value=0.00056 Score=65.63 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEe
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIri 693 (725)
.++|.||||+|||++|+.|++.+ +..++..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l---~~~~i~~ 36 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL---RLPLLSK 36 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCeEecH
Confidence 78899999999999999999987 3344443
No 221
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.88 E-value=0.00063 Score=68.81 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.++++||||+|||++|+.||+.+ +..+|..|-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---CCeEEeccH
Confidence 57899999999999999999997 445666554
No 222
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.86 E-value=0.00057 Score=64.70 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+++.||||+|||++|+.||+.+ + +..+|..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEcccHH
Confidence 58899999999999999999997 3 344555444
No 223
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.86 E-value=0.00073 Score=63.42 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
.++|.||||+|||++|+.||+.+ +.. .+|..++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~~~--~i~~d~~~~ 37 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---KYP--IIKGSSFEL 37 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---CCC--EEECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCe--eecCccccc
Confidence 57899999999999999999997 333 455555443
No 224
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.0028 Score=63.14 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
..+..++|+||||+|||+++..++..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455689999999999999998877654
No 225
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.83 E-value=0.0035 Score=62.58 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~ 334 (725)
..+..+.|+||+|+||||+++.++..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45667899999999999999999843
No 226
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.83 E-value=0.0039 Score=66.44 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=49.1
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-------ccc-------ccchHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------GAK-------ERGELEARVTTL 374 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-------g~~-------~~g~~~~~l~~~ 374 (725)
..+..++|+|+||+|||+++..++..+... +..+++++...... +.. .....+.. ..+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~-l~~ 143 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQA-LEI 143 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHH-HHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHH-HHH
Confidence 345568899999999999999999887542 44566666432110 000 01122332 233
Q ss_pred HHHH-HhcCCeEEEEccchhhhh
Q 004878 375 ISEI-QKSGDVILFIDEVHTLIG 396 (725)
Q Consensus 375 ~~~~-~~~~~~IL~IDEid~l~~ 396 (725)
++.+ +.....+||||.+..+..
T Consensus 144 l~~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHHTTTCCSEEEEECTTTCCC
T ss_pred HHHHHhcCCCCEEEEeChHHhcc
Confidence 3333 335678999999999974
No 227
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.82 E-value=0.0021 Score=60.69 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..++|+|+||+||||+++.|++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 458899999999999999999987
No 228
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.82 E-value=0.00049 Score=67.73 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
.++|.||||+||++.|+.||+.+ ++..|+..+++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR 65 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLR 65 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHH
Confidence 78889999999999999999997 367777766654
No 229
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.81 E-value=0.0023 Score=68.48 Aligned_cols=75 Identities=21% Similarity=0.406 Sum_probs=56.0
Q ss_pred eeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcC
Q 004878 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGS 710 (725)
Q Consensus 631 v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ 710 (725)
++|+..++..+...+...... + ..+|++|++||||+.+|++|.... +....|+.+|++.+.+...-+.|+|.
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~~--~-----~~vli~GesGtGKe~lAr~ih~~s-~r~~~fv~vnc~~~~~~~~~~~lfg~ 202 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAKS--K-----APVLITGESGTGKEIVARLIHRYS-GRKGAFVDLNCASIPQELAESELFGH 202 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHTS--C-----SCEEEECCTTSSHHHHHHHHHHHH-CCCSCEEEEESSSSCTTTHHHHHHEE
T ss_pred ccccchHHHHHHhhhhhhhcc--c-----hhheEEeCCCchHHHHHHHHHHhc-cccCCcEEEEcccCChHHHHHHhcCc
Confidence 455656666555555443211 1 268999999999999999999886 43445999999999998889999987
Q ss_pred CCc
Q 004878 711 PPG 713 (725)
Q Consensus 711 ppg 713 (725)
-.|
T Consensus 203 ~~g 205 (368)
T 3dzd_A 203 EKG 205 (368)
T ss_dssp CSC
T ss_pred ccc
Confidence 655
No 230
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.79 E-value=0.00071 Score=64.31 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.++|+||||+|||++++.||+.+ + +..+++.++
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~---~--~~~~~~d~~ 45 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS---G--LKYINVGDL 45 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh---C--CeEEEHHHH
Confidence 68999999999999999999997 3 344555443
No 231
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.78 E-value=0.00074 Score=64.39 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.++|.|+||+|||++|+.||+.+ +..+|..|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCCEEeCc
Confidence 58999999999999999999987 44555444
No 232
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.76 E-value=0.00057 Score=66.79 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
.++|.||||+||++.|+.||+.+ ++..|+..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHH
Confidence 47899999999999999999997 467777766653
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.70 E-value=0.001 Score=63.55 Aligned_cols=36 Identities=31% Similarity=0.534 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
.++|+||||||||++++.||+.++| +..+|+.++..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g----~~~id~d~~~~ 47 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDG----FQHLEVGKLVK 47 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTT----EEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC----CEEeeHHHHHH
Confidence 7899999999999999999998423 55666655543
No 234
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.70 E-value=0.001 Score=62.46 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEe
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIri 693 (725)
.++|.|+||||||++|+.||+.+ +..++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l---g~~~id~ 38 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL---KLEVLDT 38 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEC
Confidence 78999999999999999999997 4455443
No 235
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.68 E-value=0.0009 Score=62.99 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.|.||||||||++++.||..+ + .+.+|+.++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d~~ 38 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQE 38 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C--CCEEeccHH
Confidence 68999999999999999999987 3 455665444
No 236
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.67 E-value=0.0017 Score=62.97 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=30.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.+.|.||||+|||++++.|+..+ | .+.+|+-++...
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~-g----~~~i~~d~~~~~ 66 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET-G----LEFAEADAFHSP 66 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-C----CEEEEGGGGSCH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-C----CeEEcccccccH
Confidence 78899999999999999999987 3 577888777543
No 237
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.67 E-value=0.0011 Score=65.90 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++|+.||+.+ +. ..++..+++
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d~li 51 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF---CV--CHLATGDML 51 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---TC--EEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--ceecHHHHH
Confidence 78999999999999999999997 33 445554443
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.67 E-value=0.00077 Score=64.62 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.|.||||+|||++++.||..+ ....|.+|+-++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 68899999999999999999974 335678877654
No 239
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.66 E-value=0.00074 Score=64.67 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++|+.|++.+=..+..+..++++++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 578999999999999999999972222336777766554
No 240
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.64 E-value=0.0044 Score=66.75 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=60.0
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCccc--CCCeEEEeehhhhh-----------ccc-------------c
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL--LSKRIMSLDMGLLM-----------AGA-------------K 362 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l--~~~~l~~ld~~~l~-----------~g~-------------~ 362 (725)
..+.-++|+||||+|||||+..++.... .|... .+..+++++..... .+. .
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~---~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQ---IPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTT---SCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhc---cCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 3455688999999999999998875442 12111 23456666543310 000 0
Q ss_pred cc-chHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCc------HHHHHHHhhhhcCCCeEEEEec
Q 004878 363 ER-GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTG------LDISNLLKPSLGRGELQCIAST 430 (725)
Q Consensus 363 ~~-g~~~~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~------~~~~~~L~~~l~~~~v~vI~at 430 (725)
.. ......+..+...+....+.+|+||++..++.....+.+ +.. ..+.+.|+.+..+..+.+|.++
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g--~l~~Rq~~l~~il~~L~~lake~gitVIlv~ 325 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRG--ELSARQMHLAKFMRALQRLADQFGVAVVVTN 325 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------C--CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCcc--chHHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 00 011222333444445567889999999988653222110 001 2344555555555445555543
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.64 E-value=0.0076 Score=63.77 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=48.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-------cc-------cccchHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------GA-------KERGELEARVTTLI 375 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-------g~-------~~~g~~~~~l~~~~ 375 (725)
.+.-++|+||||+|||||+..++..+... +..+++++...... +. ......++.+..+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 44567899999999999999999887542 44555555433110 00 01112333333222
Q ss_pred HHHHhcCCeEEEEccchhhhh
Q 004878 376 SEIQKSGDVILFIDEVHTLIG 396 (725)
Q Consensus 376 ~~~~~~~~~IL~IDEid~l~~ 396 (725)
..++...+.+++||.+..+++
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCCC
T ss_pred HHhhhcCCCeEEehHhhhhcC
Confidence 223345678999999988864
No 242
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.62 E-value=0.0012 Score=65.02 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++|+.||+.+ + +..++..+++
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d~~~ 39 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF---H--AAHLATGDML 39 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--ceEEehhHHH
Confidence 78999999999999999999997 3 3445554443
No 243
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.0011 Score=63.46 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|.|+||+|||++|+.||+.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999987
No 244
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.62 E-value=0.0011 Score=62.32 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|.|+||+|||++|+.||+.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.61 E-value=0.001 Score=62.40 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++|.||||+|||++|+.| +.+ + +..++++++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~---g--~~~i~~~~~~~~ 37 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER---G--AKVIVMSDVVRK 37 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT---T--CEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHC---C--CcEEEHhHHHHH
Confidence 5789999999999999999 665 3 345555555443
No 246
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.60 E-value=0.0097 Score=57.10 Aligned_cols=29 Identities=34% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhc
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~ 338 (725)
.+.++++++.+|.||||+|-+++.+....
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~ 55 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH 55 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999999887653
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.60 E-value=0.0014 Score=63.62 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
.++|.||||+|||++|+.|++.+ + +..+|+.++..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~ 54 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP 54 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence 68999999999999999999997 3 45666666653
No 248
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.59 E-value=0.0014 Score=63.17 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=22.0
Q ss_pred CceEEcCCCChHHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
.+.|+||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999875
No 249
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.59 E-value=0.0013 Score=63.71 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.++|.||||+|||++|+.||+.+ + +..+|+.++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d~~ 49 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAGDL 49 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHHHH
Confidence 78899999999999999999986 3 344554443
No 250
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.58 E-value=0.0011 Score=63.60 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|.||||+|||++|+.||+.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999987
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.57 E-value=0.0041 Score=65.26 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=50.4
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-----------cccc-------------c-
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----------AGAK-------------E- 363 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~-----------~g~~-------------~- 363 (725)
..+..++|+||||+|||+++..++..+.... .....+..+++++..... .+.. .
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~-~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP-EKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 4456689999999999999999998753210 000113466666654320 0000 0
Q ss_pred cchHHHHHHHHHHHHHh-cCCeEEEEccchhhhh
Q 004878 364 RGELEARVTTLISEIQK-SGDVILFIDEVHTLIG 396 (725)
Q Consensus 364 ~g~~~~~l~~~~~~~~~-~~~~IL~IDEid~l~~ 396 (725)
..+....+..+...+.. .++.+|+||.+..++.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 01111223334444445 5678999999999874
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.56 E-value=0.0011 Score=63.23 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++|+.||+.+ + +..+|..++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l---~--~~~i~~d~~~ 39 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL---G--FKKLSTGDIL 39 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---T--CEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEecHHHHH
Confidence 68899999999999999999987 3 4556654443
No 253
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.55 E-value=0.0012 Score=65.29 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++|+.||+.+ + +..++..++.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d~~~ 42 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF---E--LKHLSSGDLL 42 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS---S--SEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--CeEEechHHH
Confidence 68999999999999999999986 3 3445544443
No 254
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.54 E-value=0.0016 Score=63.17 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.|.||+|||||+++++||..+...+...+.+|+-++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 78899999999999999999998522222346775433
No 255
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.53 E-value=0.0012 Score=62.94 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+.+++|+|++|+||||+++.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988
No 256
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.0011 Score=63.46 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++++.||+.+=..+.++..++.++++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~ 43 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVM 43 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHH
Confidence 688999999999999999999871111114555655443
No 257
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.50 E-value=0.0014 Score=63.23 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++|+.||+.+ + +..+|+.++.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~~~ 47 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGELL 47 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHHHH
Confidence 68899999999999999999997 3 4556655543
No 258
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.50 E-value=0.0015 Score=61.04 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=24.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEe
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIri 693 (725)
.++|.|+||+|||++|+.|++.+ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEC
Confidence 47899999999999999999987 4445443
No 259
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.50 E-value=0.0019 Score=68.54 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=24.8
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
..+..++|+||+|+||||++++++..+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 34457899999999999999999998853
No 260
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.50 E-value=0.0015 Score=68.77 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|+||||||||+++++||+.+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999999997
No 261
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.49 E-value=0.013 Score=56.47 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.6
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
..+..+.|+||+|+||||+++.|+..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556788999999999999999999884
No 262
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.49 E-value=0.0012 Score=65.09 Aligned_cols=34 Identities=12% Similarity=0.380 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++|+.||+.+ + +..+|..++.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l---~--~~~i~~d~~~ 40 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY---Q--LAHISAGDLL 40 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH---C--CEECCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CceecHHHHH
Confidence 68999999999999999999997 3 4556655443
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.49 E-value=0.0062 Score=59.91 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+.-+.|+||+|+||||+++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999999865
No 264
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.49 E-value=0.0014 Score=64.48 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|.||||+|||++|+.||+.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999997
No 265
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.48 E-value=0.0033 Score=67.20 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE 697 (725)
.++++||||||||+++++|+..+ +..++.++.++
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~ 204 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPL 204 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccc
Confidence 88999999999999999999987 33455556554
No 266
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.48 E-value=0.0017 Score=67.20 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=29.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++++||||||||+||.++|.. -|....|+.+.++|.+
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v 162 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPL 162 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhh
Confidence 6799999999999999999987 3434457777445543
No 267
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.47 E-value=0.0015 Score=67.99 Aligned_cols=31 Identities=39% Similarity=0.696 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.++++||||||||++|+.||+.+ +..+|.+|
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~D 37 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVD 37 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEecc
Confidence 68899999999999999999997 45667765
No 268
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.45 E-value=0.0017 Score=63.66 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|.||||+|||++|+.||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 269
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.44 E-value=0.00098 Score=63.03 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 004878 661 AMLFCGPTGVGKTELAKSLAAC 682 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~ 682 (725)
.++|.||||+|||++|+.|++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 6889999999999999999993
No 270
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.44 E-value=0.0016 Score=62.25 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.++|.||||||||++|+.||+.+ + +..+|..++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d~~ 40 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAGDL 40 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHHHH
Confidence 68899999999999999999987 3 344554443
No 271
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.44 E-value=0.0042 Score=65.81 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=47.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-------cccc-------ccchHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGAK-------ERGELEARVTTLI 375 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~-------~g~~-------~~g~~~~~l~~~~ 375 (725)
.+..++|+||||+|||+++..++..+... +..+++++..... .|.. .....++.+ .++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l-~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQAL-EIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHH-HHH
Confidence 45568999999999999999999877542 3445555543211 0100 001223322 223
Q ss_pred H-HHHhcCCeEEEEccchhhh
Q 004878 376 S-EIQKSGDVILFIDEVHTLI 395 (725)
Q Consensus 376 ~-~~~~~~~~IL~IDEid~l~ 395 (725)
. .+....+.+|+||++..+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGCC
T ss_pred HHHHhcCCCCEEEEcChHhhc
Confidence 3 2334568899999999986
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.43 E-value=0.0016 Score=63.89 Aligned_cols=34 Identities=15% Similarity=0.394 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++|+.||+.+ + +..++..+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d~~~ 35 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---G--IPHISTGDMF 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---S--CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CcEEeHHHHH
Confidence 47899999999999999999986 3 3445554443
No 273
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0014 Score=62.19 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceE
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSML 691 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lI 691 (725)
.++|.|+||+|||++|+.||+.+ +..++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 68899999999999999999987 44555
No 274
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.40 E-value=0.009 Score=59.55 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.7
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+++++||+|+|||.++..++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999998887664
No 275
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.40 E-value=0.017 Score=63.92 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=45.8
Q ss_pred eEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCC---CeEEEEeccchhhhhhhcccHHHHccc-ceEEecCCCH
Q 004878 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---ELQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQ 459 (725)
Q Consensus 384 ~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---~v~vI~at~~~~~~~~~~ld~~L~~Rf-~~I~i~~Ps~ 459 (725)
.+|+|||++.++.. ...++.+.+..+...+ .+.+|.+|.... .-.++..++.-| ..|.+...+.
T Consensus 299 ivlvIDE~~~ll~~---------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~---~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 299 IVVLVDEFADLMMT---------VGKKVEELIARLAQKARAAGIHLVLATQRPS---VDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEEETHHHHHHH---------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCC---TTTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEEeCHHHHHhh---------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCc---cccccHHHHhhcCCeEEEEcCCH
Confidence 58999999888642 1223445554444332 466776666543 113567777777 4788888888
Q ss_pred HHHHHHHH
Q 004878 460 EDAVRILL 467 (725)
Q Consensus 460 ee~~~IL~ 467 (725)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88877763
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.40 E-value=0.0017 Score=62.96 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.8
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+..++|+|++|+||||+++.|++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999988
No 277
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.36 E-value=0.0055 Score=63.75 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=53.5
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccc---cchHHHHHHHHHHHHHhcCCeEEEEc
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE---RGELEARVTTLISEIQKSGDVILFID 389 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~---~g~~~~~l~~~~~~~~~~~~~IL~ID 389 (725)
.++|+||+|+|||+++..|++.+ +..++..|.-.+..+... ....++ . ..-+ -.|||
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~~igTakp~~~e-~--------~gvp-h~lid 66 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGMDIGTAKPSREL-L--------ARYP-HRLID 66 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTCCTTTTCCCHHH-H--------HHSC-EETSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCCCcccCCCCHHH-H--------cCCC-EEEee
Confidence 57899999999999999999987 556666664333221110 000111 0 1112 24445
Q ss_pred cchhhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccc
Q 004878 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432 (725)
Q Consensus 390 Eid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~ 432 (725)
..+-.-..+.. .........+..++.+++++|+...+.
T Consensus 67 ~~~~~~~~~~~-----~F~~~a~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 67 IRDPAESYSAA-----EFRADALAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp CBCTTSCCCHH-----HHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCcccccCHH-----HHHHHHHHHHHHHHHcCCeEEEECCch
Confidence 44332111111 335566777777888887766655554
No 278
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.35 E-value=0.0025 Score=60.46 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=23.7
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+.+++|+|+||+||||+++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999988
No 279
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.32 E-value=0.0021 Score=62.97 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|.||||+|||++|+.||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 280
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.31 E-value=0.0087 Score=60.07 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.2
Q ss_pred CCCceEEcCCCChHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAI 333 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~ 333 (725)
.-+|+|+|.+|+|||+|+..|..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 35689999999999999999875
No 281
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.30 E-value=0.0035 Score=62.85 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.++|.||||+|||++|+.|++.+ + +..++.++++
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~~~~ 64 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTGDLL 64 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEecHHHH
Confidence 78999999999999999999987 3 4555555443
No 282
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.28 E-value=0.0057 Score=61.70 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.3
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.++|+||+|+||||+++.|+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 36899999999999999999988
No 283
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.23 E-value=0.0017 Score=67.83 Aligned_cols=31 Identities=32% Similarity=0.573 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.+++.||||||||+||..||+.+ +..+|..|
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~D 72 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSD 72 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEccc
Confidence 68899999999999999999997 44566655
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.22 E-value=0.0029 Score=59.26 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.5
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.++|.|++|+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 285
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.21 E-value=0.0092 Score=63.07 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=49.9
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-----------cc--------------cc
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-----------GA--------------KE 363 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-----------g~--------------~~ 363 (725)
..+.-++|+||||+|||+++..++....... .....+..+++++...... +. ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~-~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPG-AGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCB-TTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 3445578999999999999999998742210 0001245666666543200 00 00
Q ss_pred cchHHHHHHHHHHHHHh--cCCeEEEEccchhhhh
Q 004878 364 RGELEARVTTLISEIQK--SGDVILFIDEVHTLIG 396 (725)
Q Consensus 364 ~g~~~~~l~~~~~~~~~--~~~~IL~IDEid~l~~ 396 (725)
..+....+..+...+.. .+..+|+||.+..++.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 11222223333344444 5678999999998874
No 286
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.18 E-value=0.003 Score=59.64 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=22.4
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+++|+|+||+||||+++.|++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999988
No 287
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.18 E-value=0.0031 Score=64.95 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.++++||||+|||+||..||+.+ +..+|+.|.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds 43 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL---PVELISVDS 43 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEECCT
T ss_pred EEEEECCCccCHHHHHHHHHHhC---CCcEEeccc
Confidence 67899999999999999999996 445777663
No 288
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.18 E-value=0.0082 Score=63.66 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=49.1
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-------ccc-------ccchHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------GAK-------ERGELEARVTTL 374 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-------g~~-------~~g~~~~~l~~~ 374 (725)
..+..++|+|+||+|||+++..++..+... +..+++++...... +.. ..... +.+..+
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~-e~~~~~ 132 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEI 132 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCH-HHHHHH
Confidence 345668999999999999999999887542 44566666532110 000 00112 223333
Q ss_pred HHHH-HhcCCeEEEEccchhhhh
Q 004878 375 ISEI-QKSGDVILFIDEVHTLIG 396 (725)
Q Consensus 375 ~~~~-~~~~~~IL~IDEid~l~~ 396 (725)
++.+ +.....+|+||.+..+..
T Consensus 133 ~~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHHHTCCSEEEEECGGGCCC
T ss_pred HHHHHhccCCCEEEEcCHHHhcc
Confidence 3333 345677999999998863
No 289
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.18 E-value=0.0027 Score=62.72 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
-++|.||||+|||++|+.||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 290
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.16 E-value=0.029 Score=60.80 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=45.5
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhh-------------ccc-----cccchHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------------AGA-----KERGELEARVTT 373 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~-------------~g~-----~~~g~~~~~l~~ 373 (725)
..++|+|++|+||||++..||..+... +.++..+++.... .+. ....+.......
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~-------G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~ 170 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKR-------GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 170 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHH
Confidence 346888999999999999999988642 4555554432110 000 001122233344
Q ss_pred HHHHHHhcCCeEEEEccchhh
Q 004878 374 LISEIQKSGDVILFIDEVHTL 394 (725)
Q Consensus 374 ~~~~~~~~~~~IL~IDEid~l 394 (725)
.+..+......+++||....+
T Consensus 171 al~~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCS
T ss_pred HHHHHHhcCCCEEEEECCCCc
Confidence 455555455678899988654
No 291
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.16 E-value=0.0033 Score=63.24 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.|.||+|||||++++.||+.+ + +..+|+.++
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l---g--~~~~d~d~~ 82 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL---G--YTFFDCDTL 82 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CcEEeCcHH
Confidence 78999999999999999999987 3 445555444
No 292
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.13 E-value=0.0027 Score=59.50 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=22.9
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
...+++|+|++|+||||+++.|++.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999988
No 293
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.12 E-value=0.0033 Score=59.53 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.+.|.|++|+|||++++.|+..+...+.+++.+|.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 67899999999999999999987433445777764
No 294
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.10 E-value=0.0038 Score=65.74 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=40.3
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.++|.++.++.+.. +.. ..++++||+|+|||+|++.+++.+ ....+.+++..+
T Consensus 14 ~~~gR~~el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~ 66 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKF 66 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred HhcChHHHHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhh
Confidence 36777777776655 321 179999999999999999999997 345778887754
No 295
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.10 E-value=0.0034 Score=59.73 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=22.2
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..|+|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999988
No 296
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.014 Score=58.13 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.5
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~ 334 (725)
..+.-++|+|+||+|||+++..++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34556799999999999999988765
No 297
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.07 E-value=0.0035 Score=63.47 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s 696 (725)
-++|.|+||+|||++|+.|++.+-..+..++.+|.-
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 688999999999999999999852123455545543
No 298
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.06 E-value=0.0029 Score=60.40 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.6
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~ 334 (725)
.+.+++|+|++|+||||+++.|++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4557899999999999999999998
No 299
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0049 Score=58.78 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.++|.|+||+|||++++.||..+-..+..++.+|+
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 67899999999999999999997433334555654
No 300
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.01 E-value=0.0035 Score=59.66 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|+||+|||||+|.+.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.00 E-value=0.0039 Score=58.51 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=22.7
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+|++|+||||+++.|+..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999987
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.99 E-value=0.0034 Score=60.81 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.+.||+|||||++++.||+ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 578999999999999999999 5
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.98 E-value=0.0043 Score=59.85 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|.|+||||||++++.||+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999987
No 304
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.98 E-value=0.0069 Score=63.58 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=40.9
Q ss_pred ceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccC
Q 004878 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (725)
Q Consensus 630 ~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE 697 (725)
.++|.++.++.+...+.. | ..++++||+|||||+|++.+++.. + .+.+++.+
T Consensus 13 ~~~gR~~el~~L~~~l~~---~--------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~ 64 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN---Y--------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRE 64 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH---C--------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred hcCChHHHHHHHHHHHhc---C--------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence 367888888888777654 2 289999999999999999999985 2 66677653
No 305
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.98 E-value=0.0077 Score=57.71 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.5
Q ss_pred CceEEcCCCChHH-HHHHHHHHHHHh
Q 004878 313 NPILLGESGVGKT-AIAEGLAIRIVQ 337 (725)
Q Consensus 313 ~iLL~Gp~G~GKT-~la~~la~~l~~ 337 (725)
=.+++||.|+||| +|++++.+....
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 3578999999999 888888877654
No 306
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.97 E-value=0.011 Score=60.84 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=55.3
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcc----ccccchHHHHHHHHHHHHHhcCCeEEEE
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG----AKERGELEARVTTLISEIQKSGDVILFI 388 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g----~~~~g~~~~~l~~~~~~~~~~~~~IL~I 388 (725)
-++|+||+|+|||+|+..|++.+ +..++..|.-.+..+ +.... .++ .. .- + --||
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~~igTakp~-~~E-~~-------~v-~-hhli 70 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGMDIGTAKPN-AEE-LL-------AA-P-HRLL 70 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTCCTTTTCCC-HHH-HH-------HS-C-EETS
T ss_pred EEEEECCCccCHHHHHHHHHHhC----------CCcEEecccccccccccccCCCCC-HHH-Hc-------CC-C-EEEe
Confidence 36789999999999999999987 556666665444322 11110 011 11 11 1 2333
Q ss_pred ccch--hhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccch
Q 004878 389 DEVH--TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433 (725)
Q Consensus 389 DEid--~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~ 433 (725)
|.++ ..+..+ ....++...+..+.+++++.||.-.|.-
T Consensus 71 d~~~~~e~~s~~-------~f~~~a~~~i~~i~~~g~~pilVGGTgl 110 (316)
T 3foz_A 71 DIRDPSQAYSAA-------DFRRDALAEMADITAAGRIPLLVGGTML 110 (316)
T ss_dssp SCBCTTSCCCHH-------HHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred ccCCccccccHH-------HHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 4333 221111 3466788889999999998777665543
No 307
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.95 E-value=0.0066 Score=63.38 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.4
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+||+|+|||+|+..||+.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3468899999999999999999987
No 308
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.95 E-value=0.0023 Score=59.84 Aligned_cols=47 Identities=28% Similarity=0.475 Sum_probs=34.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPG 713 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~ppg 713 (725)
++||.||+|+|||++|.+|.+. +..||.=|...+..... +|+|.||-
T Consensus 18 gvli~G~SGaGKStlal~L~~r----G~~lvaDD~v~i~~~~~--~l~g~~p~ 64 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR----GHQLVCDDVIDLKQENN--QLIGSCPS 64 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT----TCEEEESSEEEEEESSS--CEEEECCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc----CCeEecCCEEEEEEeCC--EEEEeCch
Confidence 9999999999999999999985 34566656555543322 67777764
No 309
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.95 E-value=0.012 Score=60.82 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=54.5
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEccch
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~IL~IDEid 392 (725)
-++|.||+|+|||+|+..|++.+ +..++..|.-.+..+.. .|.-.-.. ++. ..-+ --|||.++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~QvYr~~~-igTakp~~----~E~-~gvp-hhlid~~~ 67 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL----------NGEVISGDSMQVYRGMD-IGTAKITA----EEM-DGVP-HHLIDIKD 67 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT----------TEEEEECCGGGGBTTCC-TTTTCCCH----HHH-TTCC-EESSSCBC
T ss_pred EEEEECCCcCCHHHHHHHHHHhC----------ccceeecCcccceeeee-ecCCCCCH----HHH-cCCC-EEEeccCC
Confidence 46789999999999999999887 45566655443332211 11000000 011 1112 23444433
Q ss_pred --hhhhCCCCCCCCCCCcHHHHHHHhhhhcCCCeEEEEeccch
Q 004878 393 --TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433 (725)
Q Consensus 393 --~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at~~~ 433 (725)
..+..+ ....++...+..+.+++++.||.-.|.-
T Consensus 68 ~~e~~s~~-------~F~~~a~~~i~~i~~~gk~pIlVGGTgl 103 (322)
T 3exa_A 68 PSESFSVA-------DFQDLATPLITEIHERGRLPFLVGGTGL 103 (322)
T ss_dssp TTSCCCHH-------HHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred hhhhccHH-------HHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 211111 3466778888888999988777665543
No 310
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.94 E-value=0.0021 Score=64.44 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|.||||+|||++++.||+.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999886
No 311
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.93 E-value=0.007 Score=58.19 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=21.2
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHh
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
-.+++||.|+||||.+..++.....
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~ 34 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKI 34 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3578999999999999999888754
No 312
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.93 E-value=0.033 Score=58.03 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
..+.-++|.|+||+|||+++..++..+..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34455789999999999999999987654
No 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.93 E-value=0.0034 Score=60.03 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999987
No 314
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.92 E-value=0.013 Score=64.34 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=24.2
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
..+.-++|.|+||+|||+++..++..+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34556789999999999999999988753
No 315
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.90 E-value=0.025 Score=57.69 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHHhc
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~~~ 338 (725)
..+.-++|+||+|+||||++..++..+..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 456668999999999999999999877543
No 316
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.89 E-value=0.0069 Score=65.75 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=51.7
Q ss_pred CccCHHHHHHHHHhhhCCChhhccHHHHHHHHhHHHHhcCceeCcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCC
Q 004878 590 AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669 (725)
Q Consensus 590 ~~v~~~di~~v~~~~tgip~~~l~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpG 669 (725)
..++.+|+..+...+ .+ ..+..+.+.+.. |+||+.++..+.-.+-. |..+ .|.-.++||.|+||
T Consensus 186 ~~~t~ed~~~i~~l~---------~~--~~~~~l~~sIap-I~G~e~vK~aLll~L~G---G~~k-~rgdihVLL~G~PG 249 (506)
T 3f8t_A 186 VHPDPAELEEFRELA---------DK--DPLTTFARAIAP-LPGAEEVGKMLALQLFS---CVGK-NSERLHVLLAGYPV 249 (506)
T ss_dssp CCCCHHHHHHHHHHH---------HS--CHHHHHHHHHCC-STTCHHHHHHHHHHHTT---CCSS-GGGCCCEEEESCHH
T ss_pred CCCCHHHHHHHHHHH---------HH--HHHHHHHHHhcc-cCCCHHHHHHHHHHHcC---Cccc-cCCceeEEEECCCC
Confidence 456777765543222 11 345678888999 99999987777655422 1111 11112799999999
Q ss_pred CcHHHHHHHH-HHHh
Q 004878 670 VGKTELAKSL-AACY 683 (725)
Q Consensus 670 tGKT~lAkaL-A~~l 683 (725)
| ||++|+++ ++.+
T Consensus 250 t-KS~Lar~i~~~i~ 263 (506)
T 3f8t_A 250 V-CSEILHHVLDHLA 263 (506)
T ss_dssp H-HHHHHHHHHHHTC
T ss_pred h-HHHHHHHHHHHhC
Confidence 9 99999999 7764
No 317
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.89 E-value=0.014 Score=61.81 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.2
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..+.-+.|+||+|+|||||++.++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445567899999999999999999876
No 318
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.89 E-value=0.0097 Score=57.57 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s 696 (725)
.+.+.||+|+|||++++.|+..+-..+..++.+++.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 788999999999999999999863223345555443
No 319
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.87 E-value=0.0039 Score=64.34 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.+++.||||+|||+||..||+.+ +..+|+.|
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~---~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL---NGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT---TEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhC---ccceeecC
Confidence 57899999999999999999986 44566655
No 320
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.87 E-value=0.016 Score=58.65 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
+..|+|+|+||+||||+++.|+..+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345889999999999999999998743
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.87 E-value=0.0054 Score=57.46 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..++|+|++|+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999988
No 322
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.87 E-value=0.022 Score=56.60 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.0
Q ss_pred CCCceEEcCCCChHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~ 334 (725)
...++|+|++|+|||+|+..|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 456899999999999999998754
No 323
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.86 E-value=0.0066 Score=59.10 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=29.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc--CCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYF--GSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lf--g~~~~lIrid~sE~ 698 (725)
.+.+.||+|+|||+|++.|+..+- |.....|.+|+-.+
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 778999999999999999999973 12245677765433
No 324
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.83 E-value=0.0056 Score=60.78 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.+.+.||||||||++|+.||+.+ + +..+|...+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g~~~ 44 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTGAMY 44 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCCcHH
Confidence 78899999999999999999997 2 5566766553
No 325
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.83 E-value=0.0084 Score=63.40 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=37.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSP 711 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~p 711 (725)
.++++||||||||+|+..+|..+-..+...+.+|..+-.+.. ..+-+|-+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~ 112 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVD 112 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCc
Confidence 788999999999999999998864445567888988766643 33344543
No 326
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.83 E-value=0.0061 Score=58.93 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
...++|+|++|+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999987
No 327
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.83 E-value=0.0068 Score=57.76 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=22.1
Q ss_pred CceEEcCCCChHHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
.|+|.|+||+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999985
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.82 E-value=0.0071 Score=58.64 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|.||||+|||++|+.||+.+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987
No 329
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.79 E-value=0.0044 Score=60.16 Aligned_cols=23 Identities=39% Similarity=0.885 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|+||||+|||++++.|++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68899999999999999999986
No 330
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.78 E-value=0.021 Score=57.44 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..++|+|+||+||||+++.|+..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999987
No 331
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.76 E-value=0.0031 Score=61.32 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|.|+||+|||++|+.||+.+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999986
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.76 E-value=0.0059 Score=58.28 Aligned_cols=35 Identities=26% Similarity=0.160 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.+.|.|+||+|||++|+.|++.+-..+..++..|-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 47899999999999999999986211335666553
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.75 E-value=0.0053 Score=58.78 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+..++|+|++|+||||+++.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999988
No 334
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.74 E-value=0.0056 Score=60.14 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+..++|+|+||+||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999999988
No 335
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.72 E-value=0.0055 Score=59.19 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.5
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..|+|+|+||+||||+++.|++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999999988
No 336
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.72 E-value=0.0049 Score=58.54 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|+||+|+|||+|++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999975
No 337
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.71 E-value=0.011 Score=58.04 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=30.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcC------CCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFG------SESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg------~~~~lIrid~sE~~~ 700 (725)
.+.++||||||||+|++.|+..+.- .....+.++..+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 7889999999999999999986422 133477788766443
No 338
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.71 E-value=0.015 Score=63.68 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
.+.-++|.|+||+|||+++..++..+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3445789999999999999999988754
No 339
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.71 E-value=0.0057 Score=64.08 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
.+++.||||+|||++|+.||+.+ +..+|..|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l---~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF---NGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT---TEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHc---CCceeccc
Confidence 68899999999999999999997 33455544
No 340
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.70 E-value=0.0049 Score=60.18 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc-CCCCceEEecc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYF-GSESSMLRLDM 695 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lf-g~~~~lIrid~ 695 (725)
.++|.|+||+|||++++.|++.+. ..+.+++.+|+
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 678999999999999999999873 12234677774
No 341
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.70 E-value=0.0059 Score=60.09 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.+.+.||||||||++++.|++.+ + +..+|..++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g~i~ 40 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSGAIY 40 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCccee
Confidence 68899999999999999999987 2 4445554443
No 342
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.70 E-value=0.0051 Score=57.48 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.5
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.++|+|+||+||||+++.| ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 555
No 343
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.69 E-value=0.029 Score=58.14 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
+.-++|+|++|+||||++..||..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 345789999999999999999998854
No 344
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.67 E-value=0.022 Score=58.77 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=47.4
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhc-------ccc-------ccchHHHHHHHHHHH-
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------GAK-------ERGELEARVTTLISE- 377 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~-------g~~-------~~g~~~~~l~~~~~~- 377 (725)
-++|+||||+|||+|+..++....... .+..++++|...-.. |.. .....++..-.+++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 478999999999999988887765310 134566666533210 000 011223320223333
Q ss_pred --HHhcCCeEEEEccchhhhh
Q 004878 378 --IQKSGDVILFIDEVHTLIG 396 (725)
Q Consensus 378 --~~~~~~~IL~IDEid~l~~ 396 (725)
++...+.+|+||-|..+++
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 3456789999999999974
No 345
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.65 E-value=0.0076 Score=66.42 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 004878 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSE 687 (725)
Q Consensus 633 Gq~~a~~~i~~~v~~~~~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~ 687 (725)
+|.+|+..+...+.... +.+++.||||||||+++.+++..+...+
T Consensus 29 ~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp HHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 35566666655554321 2789999999999999999999885443
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.64 E-value=0.027 Score=54.74 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=25.4
Q ss_pred hcCCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 307 CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 307 ~~~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
....+..++|+|++|+||||+++.|+..+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344556788999999999999999999884
No 347
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.62 E-value=0.017 Score=56.78 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=39.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhh---HhHhhcCCCccccc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHT---VSKLIGSPPGYVGV 717 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~---vs~liG~ppgyvG~ 717 (725)
..++|.|+||||||++|-.+|..+...+...+.+|+-.--+... +..+-..|++.+.|
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~ 67 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEY 67 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeec
Confidence 47999999999999999999998865555666666654332222 23344455665555
No 348
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.61 E-value=0.0057 Score=58.41 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.|.||||+|||++++.|+..+ + .-+.+|+-++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~-~---g~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL-D---NSAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-S---SEEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhccc-C---CeEEEcccch
Confidence 57899999999999999999864 1 1356665433
No 349
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.61 E-value=0.024 Score=57.28 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.8
Q ss_pred cCCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 308 RRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 308 ~~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
...+..++|+||+|+||||+++.++..+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 34556789999999999999999999874
No 350
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.56 E-value=0.014 Score=61.37 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+..++|+||+|+||||+++.++..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46689999999999999999999876
No 351
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.56 E-value=0.008 Score=57.24 Aligned_cols=28 Identities=36% Similarity=0.291 Sum_probs=24.0
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
.+..++|+|++|+||||+++.|+..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3445789999999999999999998853
No 352
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.55 E-value=0.008 Score=58.45 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|.|+||+|||++|+.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999986
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.55 E-value=0.006 Score=59.14 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 004878 661 AMLFCGPTGVGKTELAKSLAA 681 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~ 681 (725)
.+.|.||+|||||++++.||+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998
No 354
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.54 E-value=0.0054 Score=58.88 Aligned_cols=47 Identities=26% Similarity=0.449 Sum_probs=34.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcchhhHhHhhcCCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPP 712 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k~~vs~liG~pp 712 (725)
+++|.||||+|||++|..|++.. . .+|.-|.-.+-. ..-..+||.+|
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g---~-~iIsdDs~~v~~-~~~~~liGtak 82 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG---H-RLIADDRVDVYQ-QDEQTIVGAAP 82 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT---C-EEEESSEEEEEE-CSTTCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC---C-eEEecchhheee-cCCceEEEECC
Confidence 79999999999999999999985 2 688877654432 22224677663
No 355
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.53 E-value=0.0061 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=22.6
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
..++|+|+||+||||+++.|++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999884
No 356
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.52 E-value=0.0085 Score=57.91 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.4
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..+..++|+|++|+||||+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 445678899999999999999999887
No 357
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.52 E-value=0.015 Score=60.78 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+.+..++|+|+||+|||+++..++...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345568999999999999999998764
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.51 E-value=0.0075 Score=58.18 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s 696 (725)
.+.|.||||+|||++++.||+.+ + +.+++.++-+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l-~-g~~~~~~~~~ 39 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI-P-ANTIKYLNFP 39 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS-C-GGGEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-C-CCceEEEecC
Confidence 68899999999999999999986 2 2346655543
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.50 E-value=0.0073 Score=56.28 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=21.5
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.|+|+|++|+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 360
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.50 E-value=0.0067 Score=57.61 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=22.0
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..++|+|++|+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999987
No 361
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.49 E-value=0.0077 Score=57.45 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..|+|+|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 362
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.49 E-value=0.0078 Score=56.62 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.2
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+|++|+||||+++.|+..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3457899999999999999999876
No 363
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.48 E-value=0.0068 Score=58.52 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.|.||+|+|||++++.|+..+ . -+.+++...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~ 41 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL-A----EIKISISHT 41 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEE
T ss_pred EEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceec
Confidence 67899999999999999999985 2 355555443
No 364
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.48 E-value=0.0057 Score=59.64 Aligned_cols=23 Identities=26% Similarity=0.519 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|+||+|+|||++++.|+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 67899999999999999999986
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.48 E-value=0.0057 Score=59.81 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.2
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999877
No 366
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.47 E-value=0.059 Score=61.45 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.2
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
...+++.|+||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999998887753
No 367
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.46 E-value=0.0083 Score=59.55 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+.+|+|.|++|+||||+++.|++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999988
No 368
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.45 E-value=0.0076 Score=58.86 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.3
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.|+|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 369
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.44 E-value=0.013 Score=58.61 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+..++|+|+||+||||+++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568999999999999999999887
No 370
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.43 E-value=0.0088 Score=57.55 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.+.|++|||||++|+.|++.+ + +..+|+-++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 67799999999999999999986 3 455666555
No 371
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.43 E-value=0.0079 Score=57.72 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+|++|+||||+++.|++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999988
No 372
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.42 E-value=0.008 Score=59.08 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE 697 (725)
.++++||||+|||++++.||..+-..+...+.++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 7889999999999999999976543334555555443
No 373
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.41 E-value=0.017 Score=57.23 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh-cC-----CCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY-FG-----SESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l-fg-----~~~~lIrid~sE~ 698 (725)
.++|+||||+|||++++.||..+ .. .....+.+++.+-
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 78899999999999999999863 21 1356788888774
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.41 E-value=0.0072 Score=59.43 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+..|+|.|+||+||||+++.|++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999988
No 375
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.40 E-value=0.008 Score=58.32 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=30.7
Q ss_pred cCCCCCCCCCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 650 VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 650 ~gl~~p~rp~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.|+-....+...+.+.||||+|||++|+.|++.+ . ++..+++..+.
T Consensus 12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~-~---~~~~i~~D~~~ 57 (207)
T 2qt1_A 12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL-P---NCSVISQDDFF 57 (207)
T ss_dssp --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS-T---TEEEEEGGGGB
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc-C---CcEEEeCCccc
Confidence 3554443343478899999999999999999874 1 24555555543
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.39 E-value=0.007 Score=59.78 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=22.6
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+|+||+||||+++.|++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999999887
No 377
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.38 E-value=0.0096 Score=57.56 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.+.+.||+|+|||++|+.||+.+ + +..+|..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CceeccchHH
Confidence 67899999999999999999987 3 3444544443
No 378
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.37 E-value=0.008 Score=58.95 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.8
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999988
No 379
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.37 E-value=0.012 Score=60.56 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+||||+||||+++.|+..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999876
No 380
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.36 E-value=0.0096 Score=56.03 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=16.7
Q ss_pred eEEEEcCCCCcHHHHHHH
Q 004878 661 AMLFCGPTGVGKTELAKS 678 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAka 678 (725)
.+.++||+|+|||+++++
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 678999999999999994
No 381
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.35 E-value=0.0095 Score=61.04 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 004878 661 AMLFCGPTGVGKTELAKSLAA 681 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~ 681 (725)
.+.+.|++|+|||++|+.|++
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999994
No 382
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.35 E-value=0.0087 Score=57.30 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=24.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
-+.|.||+|||||++++.|++.+-..+..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 3689999999999999999998622233455443
No 383
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.34 E-value=0.011 Score=59.42 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCC------CCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGS------ESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~------~~~lIrid~sE~~~ 700 (725)
.+.+.||+|+|||++|+.||+.+ |- +.+.+.+++.+|..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l-g~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL-GQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-hhhcccccCCceEEEecCcccc
Confidence 78899999999999999999986 31 11244677777753
No 384
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.32 E-value=0.0092 Score=57.43 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 004878 661 AMLFCGPTGVGKTELAKSLAAC 682 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~ 682 (725)
.+.+.|++|||||++|+.||+.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7889999999999999999985
No 385
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.32 E-value=0.0068 Score=58.59 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|.||||+|||++++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 67899999999999999999986
No 386
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.31 E-value=0.0093 Score=56.79 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..++|+|++|+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 387
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.30 E-value=0.015 Score=56.66 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSE 697 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE 697 (725)
.++++||||+|||++++.+|. . .+.+.+.++..+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 789999999999999999998 3 245677788766
No 388
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.30 E-value=0.014 Score=54.13 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
.+.|.||.|+|||+|.|+|+..+ +... -|.+++-.+.+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l-~~~G-~V~~~g~~i~~ 72 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-GHQG-NVKSPTYTLVE 72 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TCCS-CCCCCTTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCCC-eEEECCEeeee
Confidence 68899999999999999999998 6543 35666655543
No 389
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.29 E-value=0.029 Score=58.50 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=30.2
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 004878 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (725)
Q Consensus 658 p~~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s 696 (725)
+...++|+||+|+|||+++..||..+-..+...+-+|..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334889999999999999999999875445555556554
No 390
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.28 E-value=0.0062 Score=58.11 Aligned_cols=25 Identities=44% Similarity=0.508 Sum_probs=21.7
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~ 334 (725)
.+..++|+||+|+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999875
No 391
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.26 E-value=0.021 Score=59.48 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.+.||+|||||++++.|+..+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78899999999999999999987
No 392
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.25 E-value=0.0091 Score=56.99 Aligned_cols=23 Identities=43% Similarity=0.785 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|.||+|+|||++++.|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999986
No 393
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.24 E-value=0.015 Score=62.19 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.+++.||||+|||+||..||+.+ +..+|+.|.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~---~~~iis~Ds 35 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF---NGEVINSDS 35 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH---TEEEEECCT
T ss_pred EEEEECcchhhHHHHHHHHHHHC---CCeEeecCc
Confidence 67899999999999999999997 445777653
No 394
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.23 E-value=0.0095 Score=56.94 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+.|+|+||+|+|||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998775
No 395
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.20 E-value=0.031 Score=59.66 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.3
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
-++|.||+|+|||+|+..|+..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 46789999999999999999988
No 396
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.19 E-value=0.011 Score=62.15 Aligned_cols=41 Identities=32% Similarity=0.411 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHh----cCCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 296 ETEIQRIIQILC----RRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 296 ~~~i~~l~~~L~----~~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
+..++.+...+. .....+++|+|++|+||||+++.|+..+.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 444444544443 33345689999999999999999999873
No 397
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.18 E-value=0.0087 Score=57.78 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
...|+|+|++|+||||+++.|++.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999887
No 398
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.17 E-value=0.014 Score=57.88 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.++++||||+|||++|..+|..+...+.+.+.++..+-
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 78999999999999999888765444556677776553
No 399
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.17 E-value=0.0087 Score=56.31 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.6
Q ss_pred CceEEcCCCChHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAI 333 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~ 333 (725)
.++|+|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 400
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.16 E-value=0.016 Score=61.39 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=32.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++++||||+|||++|..+|..+-..+.+.+.||..+-.+.
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 105 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 78999999999999999999876444556788888665554
No 401
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.16 E-value=0.037 Score=57.91 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.4
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.++|.||+|+|||+++..|+..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 47899999999999999999987
No 402
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.15 E-value=0.0098 Score=57.63 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+..++|+||||+||||+++.|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568899999999999999999876
No 403
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.13 E-value=0.015 Score=57.79 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
.+.+.||+|||||++++.||+.+ + +..+|..++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l---g--~~~~d~d~~~ 51 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF---G--FTYLDTGAMY 51 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH---C--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--CceecCCCee
Confidence 78899999999999999999987 3 4556665554
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.11 E-value=0.0094 Score=58.21 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.5
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 405
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.09 E-value=0.017 Score=61.16 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=32.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++++||||+|||+||..+|..+-..+...+.++..+-.+.
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH
Confidence 78999999999999999999776434456777887765543
No 406
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.08 E-value=0.0089 Score=56.37 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=31.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCC--CceEEecccCCcc-----hhhHh-HhhcCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSE--SSMLRLDMSEYME-----RHTVS-KLIGSP 711 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~--~~lIrid~sE~~~-----k~~vs-~liG~p 711 (725)
.+.++||+|+|||+|++.|+..+-..+ ..-|.+|+-.+.+ +.+.- +-+|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~ 62 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGAD 62 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCc
Confidence 678999999999999999999973321 3468888765432 22333 357754
No 407
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.07 E-value=0.017 Score=59.55 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=32.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCC--CCceEEecccCCcchh
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGS--ESSMLRLDMSEYMERH 702 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~--~~~lIrid~sE~~~k~ 702 (725)
+.++++||||+|||+|+-.++..+-.. +...+.||..|-++..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH
Confidence 467999999999999988877665321 4568889988766643
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.07 E-value=0.015 Score=58.50 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+|++|+||||+++.|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999988
No 409
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.06 E-value=0.031 Score=53.90 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHhcC---CCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 295 RETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 295 ~~~~i~~l~~~L~~~---~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
+++.+..+.+.+... .+.-+.|+|++|+||||+++.|+..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344566666655432 223467899999999999999999874
No 410
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.05 E-value=0.017 Score=64.21 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=31.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc-CCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS-EYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s-E~~ 699 (725)
++++.||+|+|||++.++|+..+ ......|.++.+ |+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~E~~ 300 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTREIK 300 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCccccc
Confidence 79999999999999999999987 445667887665 453
No 411
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.05 E-value=0.21 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.1
Q ss_pred CCceEEcCCCChHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~ 334 (725)
-+++|+|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999988754
No 412
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.05 E-value=0.013 Score=57.19 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.+.||+|||||++++.||+.+ + +..+|..++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d~~ 37 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL---S--MIYVDTGAM 37 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CceecCChH
Confidence 68899999999999999999986 3 345555554
No 413
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.05 E-value=0.052 Score=52.45 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..++++.+|+|+|||.++..++...
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998777654
No 414
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.04 E-value=0.012 Score=56.79 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|+||+|+|||+|.+.|+..+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999976
No 415
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.03 E-value=0.014 Score=58.71 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.+.||+|||||++++.||+.| .+..+|..++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L-----g~~~~d~g~i 61 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL-----NWRLLDSGAI 61 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CCCcCCCCce
Confidence 68899999999999999999886 2455554433
No 416
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.03 E-value=0.012 Score=58.52 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc-CCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYF-GSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lf-g~~~~lIrid~sE~ 698 (725)
.++++||+|+|||+|++.|+.... ......+.+++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 788999999999999999994322 12334566665543
No 417
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.01 E-value=0.012 Score=63.88 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
-++++||||+|||++|+.|++.+ .++.|+..++
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 292 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTL 292 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchH
Confidence 78899999999999999999886 3566776655
No 418
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.00 E-value=0.012 Score=62.80 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=25.0
Q ss_pred cCCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 308 RRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 308 ~~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
...+..++|+||+|+||||+++.++..+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34556789999999999999999999875
No 419
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.00 E-value=0.015 Score=65.88 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
.|+|.|+||+|||++|++|++.++..+..++.+|+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 68899999999999999999998644556777763
No 420
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.00 E-value=0.012 Score=57.26 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|+||+|||||+|.++|+..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999986
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.00 E-value=0.058 Score=57.14 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=23.2
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
...+.|+|+||+||||++..|+..+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999988754
No 422
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.00 E-value=0.012 Score=56.78 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|+||+|+|||+|++.|++.+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 67899999999999999999885
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.98 E-value=0.013 Score=57.36 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 004878 661 AMLFCGPTGVGKTELAKSLAA 681 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~ 681 (725)
.+.|.|++|+|||++++.||+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999998
No 424
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.96 E-value=0.0081 Score=58.44 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
-+.|.||+|+|||++++.|++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 425
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.96 E-value=0.024 Score=54.76 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc-----CCC-CceEEecccCCc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYF-----GSE-SSMLRLDMSEYM 699 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lf-----g~~-~~lIrid~sE~~ 699 (725)
..|++||||+|||++|.+++...+ ..+ ..+...++.++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~ 51 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLK 51 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcc
Confidence 789999999999999988766643 233 455455555553
No 426
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.95 E-value=0.03 Score=57.49 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.+.||+|+|||++|+.|+..+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78899999999999999999987
No 427
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.94 E-value=0.0091 Score=56.46 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=18.4
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+|++|+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3458899999999999999999887
No 428
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.92 E-value=0.041 Score=60.34 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=28.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
..++|+||+|+|||++++.||..+-..+. -|.++..+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G-~V~l~g~D~ 331 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGK-SVMLAAGDT 331 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEECCCT
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCC-eEEEecCcc
Confidence 47889999999999999999998743333 355554444
No 429
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.92 E-value=0.051 Score=56.01 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=28.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcC-CCCceEEeccc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFG-SESSMLRLDMS 696 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg-~~~~lIrid~s 696 (725)
..++|+||+|+|||+++..||..+-. .+.+..-++..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 38899999999999999999998752 34455555543
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.91 E-value=0.011 Score=61.07 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.++|.||||+|||++|+.|++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68899999999999999999963
No 431
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.90 E-value=0.014 Score=56.79 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHHHhc--CCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 298 EIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 298 ~i~~l~~~L~~--~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
.+.+|.+.+.. ..+.-+.|+||+|+|||||++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44445444433 2344567999999999999999999885
No 432
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.89 E-value=0.05 Score=61.00 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=38.5
Q ss_pred hhhhhhhhhcCCC-cccccHHHHHHHHHHH--hcCCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 278 VDLTARASEELID-PVIGRETEIQRIIQIL--CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 278 ~~l~~~~~~~~l~-~liG~~~~i~~l~~~L--~~~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
+.+.+.++.+.-- ....+.+..+.+.... ....+..+.|+|++|+||||+++.|+..+.
T Consensus 333 t~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 333 EEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3444555555432 2344455555555443 224556788999999999999999999984
No 433
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.87 E-value=0.017 Score=58.37 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHh
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
..++++||+|+|||++.++|+..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 478899999999999999999986
No 434
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.87 E-value=0.051 Score=55.97 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
.+..++|+|++|+||||++..||..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355688999999999999999999885
No 435
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.87 E-value=0.013 Score=55.57 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=21.7
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+.-++|+||+|+|||||++.|+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3457899999999999999999875
No 436
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.84 E-value=0.027 Score=58.44 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.+.||+|+|||++++.|+..+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999987
No 437
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.84 E-value=0.022 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.8
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHh
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
++|+|++|+||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998843
No 438
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.84 E-value=0.069 Score=59.12 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
..++|+|++|+||||++..|+..+..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999988864
No 439
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.83 E-value=0.042 Score=59.46 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 298 ~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
....+..++ ...+..++|+||+|+||||++++++..+.
T Consensus 155 ~~~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 155 NHDNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 334444453 34555689999999999999999999873
No 440
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.82 E-value=0.016 Score=57.12 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.3
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 441
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.82 E-value=0.024 Score=56.07 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEec
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLD 694 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid 694 (725)
-+.|.||||+|||++++.|++.+-. +..++...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 6779999999999999999999732 33455443
No 442
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.80 E-value=0.02 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.2
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.++|.||||+||+|.++.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987
No 443
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.80 E-value=0.017 Score=55.99 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.+.||+|+|||++++.|+..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999987
No 444
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.80 E-value=0.014 Score=57.26 Aligned_cols=23 Identities=43% Similarity=0.910 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.|+||+|+|||+|++.|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999986
No 445
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.78 E-value=0.39 Score=45.84 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=18.6
Q ss_pred CCCceEEcCCCChHHHHHHH-HHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEG-LAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~-la~~l 335 (725)
+.++++.+|+|+|||..+-. +...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 46799999999999987443 33443
No 446
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.77 E-value=0.015 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.5
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.-|+|.||||+||+|.++.|++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 346788999999999999999987
No 447
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.77 E-value=0.017 Score=55.11 Aligned_cols=22 Identities=45% Similarity=0.816 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 004878 662 MLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 662 iLl~GPpGtGKT~lAkaLA~~l 683 (725)
+.|+||+|+|||+|++.|.+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999998885
No 448
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.75 E-value=0.016 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..+.|+||+|+|||||++.|...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999876
No 449
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.73 E-value=0.023 Score=53.59 Aligned_cols=37 Identities=30% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeeh
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~ 354 (725)
+..++|+|++|+||||+++.|+..+.. .+..++.+|.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~-------~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC-------HGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh-------CCCcEEEECC
Confidence 445789999999999999999998743 2445565553
No 450
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.72 E-value=0.032 Score=57.70 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=30.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
..++|+||+|+|||++++.||..+-..+. =|.+++-+...
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g-~V~l~g~d~~r 140 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFR 140 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeecccc
Confidence 37889999999999999999998743332 35566655543
No 451
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.71 E-value=0.017 Score=55.30 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.+.|+||+|+|||++.+.|+..+-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999874
No 452
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.70 E-value=0.048 Score=57.02 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=28.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
..++|+||+|+|||++++.||..+-..+.. |.+++-+.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~-V~l~g~D~ 167 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFS-VVIAASDT 167 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCC-EEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEeecc
Confidence 388899999999999999999987433333 44555444
No 453
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.70 E-value=0.02 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=21.5
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999988
No 454
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.66 E-value=0.033 Score=57.60 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=29.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYM 699 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~ 699 (725)
..+.|+||+|||||++++.||..+-..+. =|.+++-+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g-~V~l~g~D~~ 141 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAGDTF 141 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECCCCS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEeecCC
Confidence 37889999999999999999998744333 3556655543
No 455
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.64 E-value=0.016 Score=56.09 Aligned_cols=25 Identities=28% Similarity=0.126 Sum_probs=22.3
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
..|+|.|++|+||||+++.|++.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999883
No 456
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.64 E-value=0.015 Score=56.06 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.3
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+.|+|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 6
No 457
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.63 E-value=0.028 Score=58.98 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s 696 (725)
.++++||+|+|||++.++|+..+ ......|.++..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~-~~~~g~i~i~~~ 207 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIEDT 207 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS-CTTSCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-cCCCcEEEECCe
Confidence 78999999999999999999986 334567888875
No 458
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.62 E-value=0.47 Score=46.78 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.3
Q ss_pred CCCceEEcCCCChHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAE 329 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~ 329 (725)
+.++++.+|+|+|||....
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 4689999999999998754
No 459
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.61 E-value=0.057 Score=52.46 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=20.4
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHh
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
.+++|+.|+||||.+..++.....
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 358999999999999988887754
No 460
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.57 E-value=0.062 Score=56.33 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhh-------------------------------------
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL------------------------------------- 356 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~------------------------------------- 356 (725)
++|.|+||+|||+++..++..+... +..+..+++..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~-------g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALND-------DRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT-------TCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Q ss_pred --------hhccccccchHHHHHHHHHHHHHhc-CCeEEEEccchhhhh----CCCCCCCCCCCcHHHHHHHhhhhcCCC
Q 004878 357 --------LMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIG----SGTVGRGNKGTGLDISNLLKPSLGRGE 423 (725)
Q Consensus 357 --------l~~g~~~~g~~~~~l~~~~~~~~~~-~~~IL~IDEid~l~~----~~~~~~~~~~~~~~~~~~L~~~l~~~~ 423 (725)
+.......-.+......+-...+.. +..++|||-++.+.. .... ..-.++...|+.+...-.
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~-----~ei~~isr~LK~lAkel~ 196 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERH-----EQIAEISRELKTLARELE 196 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChH-----HHHHHHHHHHHHHHHHcC
Q ss_pred eEEEEec
Q 004878 424 LQCIAST 430 (725)
Q Consensus 424 v~vI~at 430 (725)
+.||+.+
T Consensus 197 vpVi~ls 203 (338)
T 4a1f_A 197 IPIIALV 203 (338)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
No 461
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.53 E-value=0.038 Score=57.18 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=27.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDM 695 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~ 695 (725)
..++++||+|+|||+++..||..+-..+....-++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 478899999999999999999987433444444444
No 462
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.53 E-value=0.017 Score=56.23 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+.-++|+||+|+||||+++.|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34457899999999999999999876
No 463
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.52 E-value=0.03 Score=61.06 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
.++..++|+|++|+|||+|+..++..+.
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 3455689999999999999999988764
No 464
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.51 E-value=0.021 Score=56.07 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..+.|+|++|+||||+++.|+..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 465
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.50 E-value=0.018 Score=55.85 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.4
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
+..|+|+|++|+||||+++.|++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 445789999999999999999998743
No 466
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.48 E-value=0.018 Score=55.82 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.6
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
+..|+|+|++|+||||+++.|++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999998843
No 467
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.48 E-value=0.028 Score=59.79 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMS 696 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~s 696 (725)
.++++||+|+|||++.++|+..+ ......|.++..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~ 211 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDV 211 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCc
Confidence 78999999999999999999986 444567888753
No 468
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.47 E-value=0.03 Score=57.04 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
.++++||||+|||+|++.+|..+-
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 788999999999999999997653
No 469
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.46 E-value=0.019 Score=54.20 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSE 687 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~ 687 (725)
..+++||+|+|||++.+||+-.+++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~ 54 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLS 54 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 678999999999999999999987643
No 470
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.45 E-value=0.019 Score=55.28 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=23.0
Q ss_pred CCCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 309 ~~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..+.-++|+||+|+|||||++.|+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345567899999999999999999875
No 471
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.37 E-value=0.024 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCceEEcCCCChHHHHHHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
..+.|+|++|+||||+++.|++.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999986
No 472
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.35 E-value=0.026 Score=59.73 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
+.+++.||+|+|||++.++|+..+-
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 4788999999999999999999873
No 473
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.32 E-value=0.021 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred CceEEcCCCChHHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRIV 336 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l~ 336 (725)
-+.|+||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999998763
No 474
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.31 E-value=0.055 Score=58.72 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=30.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
..++|+||||+|||+++..||..+-..+.+.+-++.--|
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 489999999999999999999988655556655665433
No 475
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.30 E-value=0.024 Score=55.97 Aligned_cols=35 Identities=14% Similarity=0.392 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
.+-|.||||+|||++|+.||+.+ + +..+++.+++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~---g--~~~is~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF---G--IPQISTGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---T--CCEECHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh---C--CCeeechHHHH
Confidence 46689999999999999999997 3 45566655543
No 476
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.29 E-value=0.018 Score=57.46 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~ 698 (725)
.+.+.||+|+|||+|.++|+..+-. ...-|.+++-++
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~ 62 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADI 62 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEC
Confidence 7889999999999999999998632 234677887554
No 477
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.29 E-value=0.021 Score=56.99 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.8
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..++|+||+|+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999887
No 478
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.28 E-value=0.083 Score=57.73 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=23.6
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHHHh
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
.+.-++|.|+||+|||+++..++..+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 3445789999999999999999988754
No 479
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.25 E-value=0.022 Score=54.82 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+.-+.|+||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4457899999999999999999875
No 480
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.25 E-value=0.25 Score=55.06 Aligned_cols=136 Identities=20% Similarity=0.177 Sum_probs=0.0
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHhcCCCcccCCCeEEEeehhhhhcccccc-------------------chHHHHHHHH
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER-------------------GELEARVTTL 374 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~l~~ld~~~l~~g~~~~-------------------g~~~~~l~~~ 374 (725)
|+|+|.||+||||+++.|++.+.-. +.....++...+....... ......+..+
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~~-------~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~ 110 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNWI-------GVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDV 110 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhc-------CCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCcHHHHHHHhhhhc--CCCeEEEEeccchhhhhhhcccHHHHcccceE
Q 004878 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDEHRTQFEKDKALARRFQPV 452 (725)
Q Consensus 375 ~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~at~~~~~~~~~~ld~~L~~Rf~~I 452 (725)
...+....+.++++|-. .........+..++. .-.+++|-....++ ..+.+|...-
T Consensus 111 ~~~L~~~~g~~VIvDat--------------~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~--------e~i~~ri~~r 168 (520)
T 2axn_A 111 KSYLAKEGGQIAVFDAT--------------NTTRERRHMILHFAKENDFKAFFIESVCDDP--------TVVASNIMEV 168 (520)
T ss_dssp HHHHHHSCCCEEEEESC--------------CCSHHHHHHHHHHHHHHTCEEEEEEEECCCH--------HHHHHHHHHH
T ss_pred HHHHHhcCCceEEecCC--------------CCCHHHHHHHHHHHHHcCCeEEEEEEeCChH--------HHHHHHHHhh
Q ss_pred EecCC-----CHHHHHHHHHHHHHHHHhccC
Q 004878 453 LISEP-----SQEDAVRILLGLREKYEAHHN 478 (725)
Q Consensus 453 ~i~~P-----s~ee~~~IL~~~~~~~~~~~~ 478 (725)
....| +.++..+.+......|+..+.
T Consensus 169 ~~~rPdl~~~d~e~~~~~~~~Ri~~y~~~Ye 199 (520)
T 2axn_A 169 KISSPDYKDCNSAEAMDDFMKRISCYEASYQ 199 (520)
T ss_dssp TTTSGGGTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCccccCCHHHHHHHHHHHHHhhhhhhc
No 481
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.24 E-value=0.02 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.6
Q ss_pred CceEEcCCCChHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~ 334 (725)
.++|+||+|+||||+++.|+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 3689999999999999999863
No 482
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.21 E-value=0.037 Score=58.83 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=31.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcch
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMER 701 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~k 701 (725)
.++++||||+|||++|..+|..+-..+.+.+.||..+-.+.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhH
Confidence 78899999999999999998876433446677776654443
No 483
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.21 E-value=0.043 Score=58.06 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=30.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEecccCCcc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYME 700 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIrid~sE~~~ 700 (725)
..++|+||+|+|||++++.||..+-..+. =|.+++-+...
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G-~V~l~g~D~~r 197 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFR 197 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCC-EEEEecccccc
Confidence 47889999999999999999998743332 35566655543
No 484
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.19 E-value=0.055 Score=56.52 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCC------CCceEEecccCC
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFGS------ESSMLRLDMSEY 698 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg~------~~~lIrid~sE~ 698 (725)
.++++||||+|||++|..+|..+--. +.+.+.++..+-
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 78999999999999999999874211 346777777664
No 485
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.18 E-value=0.018 Score=55.39 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.3
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..|+|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999999876
No 486
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.17 E-value=0.022 Score=54.82 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+..+.|+||+|+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999998865
No 487
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.14 E-value=0.024 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.8
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHh
Q 004878 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (725)
Q Consensus 314 iLL~Gp~G~GKT~la~~la~~l~~ 337 (725)
|+|.|++|+||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999998854
No 488
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.14 E-value=0.25 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.8
Q ss_pred CCCceEEcCCCChHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIR 334 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~ 334 (725)
..+++|+|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346899999999999999998864
No 489
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.13 E-value=0.028 Score=55.70 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHH
Q 004878 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 311 ~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
+..+.|.||+|+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999988
No 490
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.12 E-value=0.025 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.++||+|+|||+|.++|+..+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 67899999999999999999986
No 491
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.11 E-value=0.65 Score=46.52 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=16.2
Q ss_pred CCceEEcCCCChHHHHHHH
Q 004878 312 NNPILLGESGVGKTAIAEG 330 (725)
Q Consensus 312 ~~iLL~Gp~G~GKT~la~~ 330 (725)
.++++++|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 6799999999999987543
No 492
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.10 E-value=0.031 Score=57.74 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.++||+|+|||+|++.|+..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 78899999999999999999997
No 493
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.07 E-value=0.048 Score=59.00 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=26.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhcCCCCceEEe
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYFGSESSMLRL 693 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lfg~~~~lIri 693 (725)
+.+++.||+|+|||++.++|+..+-....+++.+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 4688999999999999999999984433344433
No 494
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.04 E-value=0.02 Score=57.19 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 004878 661 AMLFCGPTGVGKTELAKSLAACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~l 683 (725)
.+.+.||+|+|||++++.|+..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67799999999999999999986
No 495
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.01 E-value=0.017 Score=57.08 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=15.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH-HHh
Q 004878 661 AMLFCGPTGVGKTELAKSLA-ACY 683 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA-~~l 683 (725)
.+.|.||+|+|||++++.|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 67899999999999999999 764
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.99 E-value=0.03 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.5
Q ss_pred CceEEcCCCChHHHHHHHHHHHH
Q 004878 313 NPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 313 ~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+.|.|++|+||||+++.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999988
No 497
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.99 E-value=0.073 Score=56.07 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=30.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcC------CCCceEEecccCCcc
Q 004878 661 AMLFCGPTGVGKTELAKSLAACYFG------SESSMLRLDMSEYME 700 (725)
Q Consensus 661 ~iLl~GPpGtGKT~lAkaLA~~lfg------~~~~lIrid~sE~~~ 700 (725)
.++++||||+|||++|..+|...-- .+.+.+.|+..+-++
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~ 169 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR 169 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC
Confidence 7789999999999999999987311 244677788766433
No 498
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.99 E-value=0.033 Score=59.39 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHhc
Q 004878 660 AAMLFCGPTGVGKTELAKSLAACYF 684 (725)
Q Consensus 660 ~~iLl~GPpGtGKT~lAkaLA~~lf 684 (725)
+.++++||+|+|||++.++|+..+-
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4789999999999999999999873
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.99 E-value=0.041 Score=59.64 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.1
Q ss_pred CCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 310 ~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.+.-++|+|+||+||||+++.|++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34457889999999999999998766
No 500
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.96 E-value=0.03 Score=54.61 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHhcCCCCCceEEcCCCChHHHHHHHHHHHH
Q 004878 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (725)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~iLL~Gp~G~GKT~la~~la~~l 335 (725)
.++....+...+.......++|+|.+|+||||++..++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555555566789999999999999999999876
Done!